RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 029415
(194 letters)
>3u5e_H L8, RP24, YL11, 60S ribosomal protein L9-A; translation, ribosome,
ribosomal R ribosomal protein, STM1, eukaryotic
ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_F
1s1i_H 3izs_F* 3j16_F 3o5h_I 3o58_I 3u5i_H 3jyw_H
Length = 191
Score = 251 bits (644), Expect = 2e-86
Identities = 103/195 (52%), Positives = 138/195 (70%), Gaps = 7/195 (3%)
Query: 1 MKTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKI 60
MK I + + +E+PEGV V I ++I++V GPRG L++N KH+++ F + + +K+
Sbjct: 1 MKYIQTEQQIEVPEGVTVSIKSRIVKVVGPRGTLTKNLKHIDVTFTKVNNQ-----LIKV 55
Query: 61 DAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANAD--KSIEIR 118
G RK AA+RT S V N+ITGVTKGY+YKMR+VYAHFPIN +I D K IE+R
Sbjct: 56 AVHNGGRKHVAALRTVKSLVDNMITGVTKGYKYKMRYVYAHFPINVNIVEKDGAKFIEVR 115
Query: 119 NFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKF 178
NFLG+KK+R V + DGVT+ S VKDE++L GN +E VS++AA + Q C V+NKDIRKF
Sbjct: 116 NFLGDKKIRNVPVRDGVTIEFSTNVKDEIVLSGNSVEDVSQNAADLQQICRVRNKDIRKF 175
Query: 179 LDGIYVSEKGTIVGE 193
LDGIYVS KG I +
Sbjct: 176 LDGIYVSHKGFITED 190
>3iz5_F 60S ribosomal protein L9 (L6P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_F
Length = 190
Score = 247 bits (632), Expect = 1e-84
Identities = 155/193 (80%), Positives = 177/193 (91%), Gaps = 4/193 (2%)
Query: 1 MKTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKI 60
MKTIL+SETMEIPEGV V++ AK++ VEGPRGKL+RNFKHLNLDF L G RKL++
Sbjct: 1 MKTILASETMEIPEGVTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQL----LEGGRKLQV 56
Query: 61 DAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNF 120
DAWFG+R+T AAIRTA+SHVQNLITGVTKGYRYKMRFVYAHFPINASI N++ +IEIRNF
Sbjct: 57 DAWFGTRRTMAAIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNF 116
Query: 121 LGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
LGEKKVR+V+ML+GVT+LRS+KVKDEL+LDGNDIELVSRSAALINQKCHVKNKDIRKFLD
Sbjct: 117 LGEKKVRKVDMLEGVTILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 176
Query: 181 GIYVSEKGTIVGE 193
GIYVS+KGTI +
Sbjct: 177 GIYVSDKGTITED 189
>4a17_E RPL9, 60S ribosomal protein L9; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_E 4a1c_E 4a1e_E
Length = 188
Score = 244 bits (626), Expect = 8e-84
Identities = 80/193 (41%), Positives = 126/193 (65%), Gaps = 5/193 (2%)
Query: 1 MKTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKI 60
M+ +L+ + IP+ V + +++EV+GP G + R F++ ++D T +K+
Sbjct: 1 MRHLLTEVNVPIPDKVTITAKQRVVEVKGPLGTIKRAFRYASVDIQKPTAD-----NVKL 55
Query: 61 DAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNF 120
W SRK A +++ S ++N+I GVT+GY++KM+ +AHFPI ++A SIEI++F
Sbjct: 56 QIWQASRKERAVLQSIASQIKNMIRGVTEGYKFKMKLAFAHFPIQEAVAKDGSSIEIKHF 115
Query: 121 LGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
LGEK++RR++ L GV + R D+ K+ L L G D+ VS++ ALI+Q C VK KDIR+FLD
Sbjct: 116 LGEKRIRRIQALPGVKISRKDEEKNTLTLQGIDLNNVSQTCALIHQSCLVKEKDIRQFLD 175
Query: 181 GIYVSEKGTIVGE 193
GIYVS+K + E
Sbjct: 176 GIYVSDKRLAMNE 188
>2zkr_e 60S ribosomal protein L9; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 192
Score = 238 bits (610), Expect = 3e-81
Identities = 113/194 (58%), Positives = 140/194 (72%), Gaps = 3/194 (1%)
Query: 1 MKTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKI 60
MKTILS++T++IPE V + + + + V+GPRG L R+F H+N++ L+ K++L++
Sbjct: 1 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLL---GKKKKRLRV 57
Query: 61 DAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNF 120
D W+G+RK A +RT SHVQN+I GVT G+RYKMR VYAHFPIN I +EIRNF
Sbjct: 58 DKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNF 117
Query: 121 LGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
LGEK +RRV M GV S KDELIL+GNDIELVS SAALI Q VKNKDIRKFLD
Sbjct: 118 LGEKYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLD 177
Query: 181 GIYVSEKGTIVGED 194
GIYVSEKGT+ D
Sbjct: 178 GIYVSEKGTVQQAD 191
>1vq8_E 50S ribosomal protein L6P; ribosome 50S, protein-protein complex,
RNA-RNA complex, PROT complex, peptidyl transferase
reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A
{Haloarcula marismortui} SCOP: d.141.1.1 d.141.1.1 PDB:
1vq4_E* 1vq5_E* 1vq6_E* 1vq7_E* 1s72_E* 1vq9_E* 1vqk_E*
1vql_E* 1vqm_E* 1vqn_E* 1vqo_E* 1vqp_E* 1yhq_E* 1yi2_E*
1yij_E* 1yit_E* 1yj9_E* 1yjn_E* 1yjw_E* 2otj_E* ...
Length = 178
Score = 220 bits (562), Expect = 4e-74
Identities = 59/188 (31%), Positives = 96/188 (51%), Gaps = 11/188 (5%)
Query: 5 LSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWF 64
+ +EIPE V + + I VEG G ++R + ++D + + I++
Sbjct: 1 MPRVELEIPEDVDAEQDHLDITVEGDNGSVTRRLWYPDIDVSV------DGDTVVIESDE 54
Query: 65 GSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEK 124
+ KT + I T SH++N+ GVT+G+ Y M Y+HFP+ ++ + I NFLGEK
Sbjct: 55 DNAKTMSTIGTFQSHIENMFHGVTEGWEYGMEVFYSHFPMQVNVEG--DEVVIENFLGEK 112
Query: 125 KVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYV 184
RR + V + +EL + G DIE V ++AA I Q + +KD+R F DG+Y+
Sbjct: 113 APRRTTIHGDTDV---EIDGEELTVSGPDIEAVGQTAADIEQLTRINDKDVRVFQDGVYI 169
Query: 185 SEKGTIVG 192
+ K
Sbjct: 170 TRKPNRGD 177
>2cql_A OK/SW-CL.103, 60S ribosomal protein L9; N-terminal domain, alpha
and beta (A+B), structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: d.141.1.1
Length = 100
Score = 105 bits (263), Expect = 5e-30
Identities = 41/91 (45%), Positives = 64/91 (70%), Gaps = 3/91 (3%)
Query: 1 MKTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKI 60
MKTILS++T++IPE V + + + + V+GPRG L R+F H+N++ L+ + ++L++
Sbjct: 8 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKK---KRLRV 64
Query: 61 DAWFGSRKTSAAIRTALSHVQNLITGVTKGY 91
D W+G+RK A +RT SHVQN+I GVT G
Sbjct: 65 DKWWGNRKELATVRTICSHVQNMIKGVTLGS 95
>3bbo_I Ribosomal protein L6; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 223
Score = 48.8 bits (117), Expect = 1e-07
Identities = 15/85 (17%), Positives = 38/85 (44%), Gaps = 6/85 (7%)
Query: 11 EIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTS 70
+P V + + + ++V+GP G+L+ + + + L++ +R+ +
Sbjct: 52 AVPSNVTIALEGQDLKVKGPLGELALTYP------REVELTKEESGFLRVKKTVETRRAN 105
Query: 71 AAIRTALSHVQNLITGVTKGYRYKM 95
+ N++ GV+KG+ K+
Sbjct: 106 QMHGLFRTLTDNMVVGVSKGFEKKL 130
>3r8s_G 50S ribosomal protein L6; protein biosynthesis, RNA, tRNA,
transfer RNA, 23S ribosomal subunit, ribosome recycling
factor, RRF, ribosome; 3.00A {Escherichia coli} PDB:
1p85_E 1p86_E 2awb_G 2aw4_G 2i2v_G 2j28_G 2i2t_G*
2qao_G* 2qba_G* 2qbc_G* 2qbe_G 2qbg_G 2qbi_G* 2qbk_G*
2qov_G 2qox_G 2qoz_G* 2qp1_G* 2rdo_G 2vhm_G ...
Length = 176
Score = 48.2 bits (116), Expect = 1e-07
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 11 EIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTS 70
+P GV VKIN ++I ++G G+L+R + ++ D L G
Sbjct: 9 VVPAGVDVKINGQVITIKGKNGELTRTL-NDAVEVKH-ADNT-----LTFGPRDGYADGW 61
Query: 71 AAIRTALSHVQNLITGVTKGYRYKM 95
A TA + + +++ GVT+G+ K+
Sbjct: 62 AQAGTARALLNSMVIGVTEGFTKKL 86
>1rl6_A Protein (ribosomal protein L6); RNA-binding protein, gentamicin
resistance, alpha/beta protein; 2.00A {Geobacillus
stearothermophilus} SCOP: d.141.1.1 d.141.1.1 PDB:
1giy_H 1ml5_h* 1c04_B 1yl3_H 2b66_H 2b9n_H 2b9p_H
1eg0_J 487d_J
Length = 177
Score = 47.9 bits (115), Expect = 2e-07
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 11 EIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTS 70
EIP GV V +N + V+GP+G+L+R F H ++ + + + +
Sbjct: 9 EIPAGVTVTVNGNTVTVKGPKGELTRTF-HPDMTITV-EGNV-----ITVTRPSDEKHHR 61
Query: 71 AAIRTALSHVQNLITGVTKGYRYKM 95
A T S + N++ GV+KGY +
Sbjct: 62 ALHGTTRSLLANMVEGVSKGYEKAL 86
>3v2d_H 50S ribosomal protein L6; ribosome associated inhibitor A, RAIA,
protein Y, stress RES stationary phase, ribosome
hibernation, ribosome; 2.70A {Thermus thermophilus}
PDB: 1vsp_F 2hgj_H 2hgq_H 2hgu_H 1vsa_F 2j03_H 2jl6_H
2jl8_H 2v47_H 2v49_H 2wdi_H 2wdj_H 2wdl_H 2wdn_H 2wh2_H
2wh4_H 2wrj_H 2wrl_H 2wro_H 2wrr_H ...
Length = 180
Score = 46.7 bits (112), Expect = 5e-07
Identities = 16/85 (18%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 11 EIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTS 70
+P+GV V++ ++V+GP+G+L + + +G ++++ R+
Sbjct: 10 PVPKGVSVEVAPGRVKVKGPKGELEVPV-SPEMRVVV-EEGV-----VRVERPSDERRHK 62
Query: 71 AAIRTALSHVQNLITGVTKGYRYKM 95
+ + + N + GV++GY ++
Sbjct: 63 SLHGLTRTLIANAVKGVSEGYSKEL 87
>1nkw_E 50S ribosomal protein L6; ribosome, large subunit, X- RAY
structure, peptidyl-transferase, peptide bond formation;
3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB:
1sm1_E*
Length = 212
Score = 47.2 bits (113), Expect = 6e-07
Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 7/85 (8%)
Query: 11 EIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTS 70
+P GV V + +V+GP+G+L+ + + L + L ++ ++K
Sbjct: 37 AVPSGVTVNAQDGVFKVKGPKGELTVPY-NTELTVRQ-DGDQ-----LLVERPSDAQKHR 89
Query: 71 AAIRTALSHVQNLITGVTKGYRYKM 95
A + V N + GV+ GY +
Sbjct: 90 ALHGLTRTLVANAVKGVSDGYTINL 114
>2zjr_E 50S ribosomal protein L6; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: d.141.1.1 d.141.1.1 PDB: 1nwx_E*
1xbp_E* 2zjp_E* 2zjq_E 1nwy_E 3cf5_E* 3dll_E* 3pio_E*
3pip_E* 1pnu_E 1pny_E 1vor_H 1vou_H 1vow_H 1voy_H
1vp0_H
Length = 185
Score = 46.3 bits (111), Expect = 7e-07
Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 7/85 (8%)
Query: 11 EIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTS 70
+P GV V + +V+GP+G+L+ + + L + L ++ ++K
Sbjct: 10 AVPSGVTVNAQDGVFKVKGPKGELTVPY-NTELTVRQ-DGDQ-----LLVERPSDAQKHR 62
Query: 71 AAIRTALSHVQNLITGVTKGYRYKM 95
A + V N + GV+ GY +
Sbjct: 63 ALHGLTRTLVANAVKGVSDGYTINL 87
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.0 bits (80), Expect = 0.012
Identities = 25/158 (15%), Positives = 50/158 (31%), Gaps = 53/158 (33%)
Query: 7 SETMEIPEGVK-VKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFG 65
++ M I V+ V RG + + E G+ + A
Sbjct: 1774 ADVMSIESLVEVVFY----------RGMTMQV---------AVPRDELGRSNYGMIAINP 1814
Query: 66 SRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIAN--------------- 110
R ++ + AL +V + T V I N
Sbjct: 1815 GRVAASFSQEALQYVVERVGKRTGW------LV--------EIVNYNVENQQYVAAGDLR 1860
Query: 111 A-DKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDEL 147
A D + NF+ K++++++++ L ++V+ L
Sbjct: 1861 ALDTVTNVLNFI---KLQKIDIIELQKSLSLEEVEGHL 1895
Score = 31.6 bits (71), Expect = 0.18
Identities = 27/162 (16%), Positives = 47/162 (29%), Gaps = 57/162 (35%)
Query: 44 DFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSH------VQN---------LITGVT 88
F + ++ + + + G R A T+L ++N I+ +T
Sbjct: 291 SFF-----VSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLT 345
Query: 89 KGYRYK-MRFVYAHFP----INASIANADKSIEIRNFLGEKKVRRV-----EMLDG-VTV 137
+ + +H P + S+ N +N V + L G
Sbjct: 346 QEQVQDYVNKTNSHLPAGKQVEISLVNGA-----KNL--------VVSGPPQSLYGLNLT 392
Query: 138 LRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFL 179
LR K LD + I R N+ FL
Sbjct: 393 LRKAKAPSG--LDQSRIPFSERKLKFSNR-----------FL 421
Score = 30.8 bits (69), Expect = 0.29
Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 8/74 (10%)
Query: 120 FLG--EKKVRRVEMLDGVTVLRSDKVKDEL---ILDGNDIELVSRSAALINQKCHVKNKD 174
FLG V ++ VL E L+GNDI ++ N VK K+
Sbjct: 64 FLGYVSSLVEPSKVGQFDQVLNL--CLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKE 121
Query: 175 -IRKFLDGIYVSEK 187
I+ ++ ++++
Sbjct: 122 LIKNYITARIMAKR 135
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.5 bits (73), Expect = 0.074
Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 27/93 (29%)
Query: 38 FKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRF 97
F+ + LDF + ++K+ R S A A + N + + YK +
Sbjct: 493 FRMVFLDFRFL------EQKI--------RHDSTA-WNASGSILNTLQQLKF---YK-PY 533
Query: 98 VYAHFPINASIANADKSIEIRNFL---GEKKVR 127
+ + P + NA I +FL E +
Sbjct: 534 ICDNDPKYERLVNA-----ILDFLPKIEENLIC 561
Score = 28.7 bits (63), Expect = 1.6
Identities = 28/166 (16%), Positives = 60/166 (36%), Gaps = 39/166 (23%)
Query: 1 MKTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRK--- 57
K+ILS E ++ II + R F + L++ E +K
Sbjct: 42 PKSILSKEEID-----------HIIMSKDAVSGTLRLF------WTLLSKQEEMVQKFVE 84
Query: 58 --LKID-AWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINA--SIANAD 112
L+I+ + + + + Q + +T+ Y + +Y + A +++
Sbjct: 85 EVLRINYKF---------LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ 135
Query: 113 KSIEIRNFLGEKKVRRVEMLDGV-----TVLRSDKVKDELILDGND 153
+++R L E + + ++DGV T + D + D
Sbjct: 136 PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD 181
>1s5d_A Cholera enterotoxin, A chain; heat-labIle enterotoxin, ADP ribose
transfera toxins, transferase,toxin; HET: GAL; 1.75A
{Vibrio cholerae} SCOP: d.166.1.1 PDB: 1s5c_A 1s5b_A*
1s5e_A* 1s5f_A* 1lt3_A* 1lt4_A* 1xtc_A 2a5d_B* 2a5f_B*
2a5g_B* 1lti_A* 1ltg_A 1htl_A 1lta_A* 1lts_A 1ltb_A
1ltt_A* 1xtc_C
Length = 240
Score = 31.7 bits (71), Expect = 0.12
Identities = 16/84 (19%), Positives = 32/84 (38%), Gaps = 5/84 (5%)
Query: 30 PRGKLSRNFKHLNLDFHLMT--DGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGV 87
PRG+ + ++ +L G D + TS ++R+A Q +++G
Sbjct: 24 PRGQSESFDRGTQMNINLYDHARGTQTGFVRHDDGYVS---TSISLRSAHLVGQTILSGH 80
Query: 88 TKGYRYKMRFVYAHFPINASIANA 111
+ Y Y + F +N +
Sbjct: 81 STYYIYVIATAPNMFNVNDVLGAY 104
>1tii_A LT-IIB, heat labIle enterotoxin type IIB; ADP-ribosyl
transferase, ADP-ribosylation, ganglioside receptor;
2.25A {Escherichia coli} SCOP: d.166.1.1
Length = 190
Score = 30.5 bits (68), Expect = 0.23
Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 5/69 (7%)
Query: 30 PRG--KLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGV 87
PRG + +N++ + G D + T+ +R A QN++ G
Sbjct: 22 PRGQDEAYERGTPININLYDHARGTATGNTRYNDGYVS---TTTTLRQAHLLGQNMLGGY 78
Query: 88 TKGYRYKMR 96
+ Y Y +
Sbjct: 79 NEYYIYVVA 87
>1azw_A Proline iminopeptidase; aminopeptidase, serine protease,
xanthomonas campestris; 2.70A {Xanthomonas citri} SCOP:
c.69.1.7
Length = 313
Score = 28.3 bits (62), Expect = 1.8
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 42 NLDFHLMTDGETGKRKLKIDAWF---GSRKTSAAIRTALSHVQNLITGVTKG 90
N + L+ D E + L +D W GS ++ A+ A +H Q + V +G
Sbjct: 83 NTTWDLVADIERLRTHLGVDRWQVFGGSWGSTLALAYAQTHPQQVTELVLRG 134
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane
protein, P-type ATPase, active transport, cryo-electron
microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Length = 920
Score = 28.1 bits (63), Expect = 2.1
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 13/51 (25%)
Query: 126 VRR---VEMLDGVTVLRSDK----------VKDELILDGNDIELVSRSAAL 163
V++ +E L GV +L SDK + D + G D E + +A L
Sbjct: 360 VQKLSAIESLAGVEILCSDKTGTLTKNKLSLHDPYTVAGVDPEDLMLTACL 410
>1wm1_A Proline iminopeptidase; complex with inhibitor, hydrolase; HET:
PTB; 2.10A {Serratia marcescens} SCOP: c.69.1.7 PDB:
1qtr_A* 1x2b_A* 1x2e_A*
Length = 317
Score = 26.7 bits (58), Expect = 4.9
Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 42 NLDFHLMTDGETGKRKLKIDAWF---GSRKTSAAIRTALSHVQNLITGVTKG 90
N +HL+ D E + ++ W GS ++ A+ A +H + + V +G
Sbjct: 86 NTTWHLVADIERLREMAGVEQWLVFGGSWGSTLALAYAQTHPERVSEMVLRG 137
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump,
ATP-binding, hydrogen ION transport, hydrolase, ION
transport; HET: ACP; 3.60A {Arabidopsis thaliana}
Length = 885
Score = 26.9 bits (60), Expect = 5.3
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 19/65 (29%)
Query: 126 VRR---VEMLDGVTVLRSDK-------------VKDELILDGNDIELVSRSAALINQKCH 169
+R +E + G+ VL SDK E+ G + + V AA+ +
Sbjct: 311 TKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLVEVFCKGVEKDQVLLFAAMAS---R 367
Query: 170 VKNKD 174
V+N+D
Sbjct: 368 VENQD 372
>2q78_A Uncharacterized protein; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2, hydrolase; HET: MSE MLC; 2.20A {Thermotoga
maritima MSB8} SCOP: d.38.1.7
Length = 153
Score = 25.6 bits (56), Expect = 9.5
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 13 PEGVKVKINAKIIEVEGPR 31
P G +V + +++ V G R
Sbjct: 89 PTGTRVAVGVRVVGVVGNR 107
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.136 0.378
Gapped
Lambda K H
0.267 0.0704 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,908,399
Number of extensions: 169073
Number of successful extensions: 416
Number of sequences better than 10.0: 1
Number of HSP's gapped: 398
Number of HSP's successfully gapped: 30
Length of query: 194
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 106
Effective length of database: 4,244,745
Effective search space: 449942970
Effective search space used: 449942970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.0 bits)