RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 029415
(194 letters)
>d1vqoe2 d.141.1.1 (E:80-172) Ribosomal protein L6 {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 93
Score = 144 bits (365), Expect = 7e-46
Identities = 35/97 (36%), Positives = 53/97 (54%), Gaps = 5/97 (5%)
Query: 91 YRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILD 150
+ Y M Y+HFP+ ++ + I NFLGEK RR + V + +EL +
Sbjct: 1 WEYGMEVFYSHFPMQVNVEG--DEVVIENFLGEKAPRRTTIHGDTDV---EIDGEELTVS 55
Query: 151 GNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 187
G DIE V ++AA I Q + +KD+R F DG+Y++ K
Sbjct: 56 GPDIEAVGQTAADIEQLTRINDKDVRVFQDGVYITRK 92
>d2cqla1 d.141.1.1 (A:1-87) Ribosomal protein L6 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 87
Score = 85.0 bits (210), Expect = 1e-22
Identities = 41/90 (45%), Positives = 64/90 (71%), Gaps = 3/90 (3%)
Query: 1 MKTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKI 60
MKTILS++T++IPE V + + + + V+GPRG L R+F H+N++ L+ + ++L++
Sbjct: 1 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKK---KRLRV 57
Query: 61 DAWFGSRKTSAAIRTALSHVQNLITGVTKG 90
D W+G+RK A +RT SHVQN+I GVT G
Sbjct: 58 DKWWGNRKELATVRTICSHVQNMIKGVTLG 87
>d1vqoe1 d.141.1.1 (E:1-79) Ribosomal protein L6 {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 79
Score = 63.0 bits (153), Expect = 3e-14
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 11 EIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTS 70
EIPE V + + I VEG G ++R + ++D + I++ + KT
Sbjct: 6 EIPEDVDAEQDHLDITVEGDNGSVTRRLWYPDIDV------SVDGDTVVIESDEDNAKTM 59
Query: 71 AAIRTALSHVQNLITGVTKG 90
+ I T SH++N+ GVT+G
Sbjct: 60 STIGTFQSHIENMFHGVTEG 79
>d2zjre2 d.141.1.1 (E:5-82) Ribosomal protein L6 {Deinococcus
radiodurans [TaxId: 1299]}
Length = 78
Score = 62.9 bits (153), Expect = 3e-14
Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 7/80 (8%)
Query: 11 EIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTS 70
+P GV V + +V+GP+G+L+ ++ +L ++ ++K
Sbjct: 6 AVPSGVTVNAQDGVFKVKGPKGELTVP-------YNTELTVRQDGDQLLVERPSDAQKHR 58
Query: 71 AAIRTALSHVQNLITGVTKG 90
A + V N + GV+ G
Sbjct: 59 ALHGLTRTLVANAVKGVSDG 78
>d2j01h1 d.141.1.1 (H:12-82) Ribosomal protein L6 {Thermus
thermophilus [TaxId: 274]}
Length = 71
Score = 61.7 bits (150), Expect = 6e-14
Identities = 14/78 (17%), Positives = 34/78 (43%), Gaps = 7/78 (8%)
Query: 13 PEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAA 72
P+GV V++ ++V+GP+G+L + ++++ R+ +
Sbjct: 1 PKGVSVEVAPGRVKVKGPKGELEVPVSPEMRV-------VVEEGVVRVERPSDERRHKSL 53
Query: 73 IRTALSHVQNLITGVTKG 90
+ + N + GV++G
Sbjct: 54 HGLTRTLIANAVKGVSEG 71
>d2qamg1 d.141.1.1 (G:1-81) Ribosomal protein L6 {Escherichia coli
[TaxId: 562]}
Length = 81
Score = 61.3 bits (149), Expect = 1e-13
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
Query: 11 EIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTS 70
+P GV VKIN ++I ++G G+L+R + + + L G
Sbjct: 9 VVPAGVDVKINGQVITIKGKNGELTR-------TLNDAVEVKHADNTLTFGPRDGYADGW 61
Query: 71 AAIRTALSHVQNLITGVTKG 90
A TA + + +++ GVT+G
Sbjct: 62 AQAGTARALLNSMVIGVTEG 81
>d1rl6a1 d.141.1.1 (A:7-81) Ribosomal protein L6 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 75
Score = 61.0 bits (148), Expect = 2e-13
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 11 EIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTS 70
EIP GV V +N + V+GP+G+L+R F + D + +G + +
Sbjct: 3 EIPAGVTVTVNGNTVTVKGPKGELTRTF---HPDMTITVEGNVI----TVTRPSDEKHHR 55
Query: 71 AAIRTALSHVQNLITGVTKG 90
A T S + N++ GV+KG
Sbjct: 56 ALHGTTRSLLANMVEGVSKG 75
>g1tii.1 d.166.1.1 (A:,C:) Heat-labile toxin, A-chain {Escherichia
coli, type IIB [TaxId: 562]}
Length = 223
Score = 31.8 bits (72), Expect = 0.030
Identities = 19/109 (17%), Positives = 34/109 (31%), Gaps = 21/109 (19%)
Query: 41 LNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRF--- 97
+N++ + G D + T+ +R A QN++ G + Y Y +
Sbjct: 35 ININLYDHARGTATGNTRYNDGYVS---TTTTLRQAHLLGQNMLGGYNEYYIYVVAAAPN 91
Query: 98 ---------VYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTV 137
Y+ +P A I + +G RV G
Sbjct: 92 LFDVNGVLGRYSPYPSENEYAALGG-IPLSQIIG---WYRVS--FGAIE 134
>d1s5da_ d.166.1.1 (A:) Cholera toxin {Vibrio cholerae [TaxId: 666]}
Length = 235
Score = 29.2 bits (65), Expect = 0.26
Identities = 14/86 (16%), Positives = 32/86 (37%), Gaps = 17/86 (19%)
Query: 41 LNLDFHL-MTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRF-- 97
+N++ + +TG + D + TS ++R+A Q +++G + Y Y +
Sbjct: 37 MNINLYDHARGTQTGFVRHD-DGYVS---TSISLRSAHLVGQTILSGHSTYYIYVIATAP 92
Query: 98 ----------VYAHFPINASIANADK 113
Y+ P ++
Sbjct: 93 NMFNVNDVLGAYSPHPDEQEVSALGG 118
>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM
{Methylobacillus flagellatus [TaxId: 405]}
Length = 395
Score = 28.0 bits (62), Expect = 0.67
Identities = 4/35 (11%), Positives = 17/35 (48%)
Query: 111 ADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKD 145
++ E+ + + + E+ G+ ++ +D+ +
Sbjct: 58 HERPCEVIAAVDDFRYHSGELYYGLPIISTDRFTE 92
>d1vfsa1 b.49.2.2 (A:4-12,A:250-385) Alanine racemase {Streptomyces
lavendulae [TaxId: 1914]}
Length = 145
Score = 25.0 bits (54), Expect = 5.0
Identities = 20/129 (15%), Positives = 43/129 (33%), Gaps = 20/129 (15%)
Query: 73 IRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANAD--------KSIEIRNFLGEK 124
+R +L+ V+ + G Y + AD + + +
Sbjct: 12 LRASLALVKTVPAGHGVSYGHHYVTESETHLALVPAGYADGIPRNASGRGPVLVAGKIRR 71
Query: 125 KVRRVEMLDGVTVLRSD---KVKDELILDGND------IELVSRSAALINQK--CHVKNK 173
R+ M D V + + DE ++ G+ E +++A I + + +
Sbjct: 72 AAGRIAM-DQFVVDLGEDLAEAGDEAVILGDAERGEPTAEDWAQAAHTIAYEIVTRIGGR 130
Query: 174 DIRKFLDGI 182
R +L G+
Sbjct: 131 VPRVYLGGL 139
>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase
RumA, catalytic domain {Escherichia coli [TaxId: 562]}
Length = 358
Score = 25.4 bits (54), Expect = 5.5
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 71 AAIRTALSH-VQNLITGVTKGYRYKMRFVYAHFP 103
AA+ + H V +I V GYR + R + P
Sbjct: 32 AALARLMKHDVSEVIADVPWGYRRRARLSLNYLP 65
>d2fug41 e.18.1.2 (4:35-409) NADH-quinone oxidoreductase chain 4,
Nqo4 {Thermus thermophilus [TaxId: 274]}
Length = 375
Score = 24.8 bits (53), Expect = 7.4
Identities = 9/51 (17%), Positives = 20/51 (39%), Gaps = 9/51 (17%)
Query: 10 MEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKI 60
EG + E RG+L +++++DG + ++K+
Sbjct: 295 KHYTEGFHPPKGEVYVPTESARGELG---------YYIVSDGGSMPYRVKV 336
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.136 0.378
Gapped
Lambda K H
0.267 0.0595 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 699,256
Number of extensions: 31608
Number of successful extensions: 92
Number of sequences better than 10.0: 1
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 15
Length of query: 194
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 113
Effective length of database: 1,295,466
Effective search space: 146387658
Effective search space used: 146387658
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.3 bits)