Your job contains 1 sequence.
>029417
MAAMAALQSSMTSLSISSNSFFGQRLSFPSLSPITVKPTDKPCLIVVRLKRWERKECKPN
SLPVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQ
GQIIKIEAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIIDSAENWKKLKE
ANRQEKTEVATAA
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 029417
(193 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2172154 - symbol:RPL24 "plastid ribosomal prot... 611 1.3e-59 1
TIGR_CMR|BA_0121 - symbol:BA_0121 "ribosomal protein L24"... 184 2.3e-14 1
TIGR_CMR|GSU_2846 - symbol:GSU_2846 "ribosomal protein L2... 176 1.6e-13 1
TIGR_CMR|CBU_0249 - symbol:CBU_0249 "ribosomal protein L2... 169 9.1e-13 1
TIGR_CMR|CHY_2298 - symbol:CHY_2298 "ribosomal protein L2... 166 1.9e-12 1
TIGR_CMR|DET_0485 - symbol:DET_0485 "ribosomal protein L2... 166 1.9e-12 1
TIGR_CMR|APH_0291 - symbol:APH_0291 "ribosomal protein L2... 141 8.4e-10 1
TAIR|locus:504954880 - symbol:AT5G23535 species:3702 "Ara... 140 1.1e-09 1
UNIPROTKB|P60627 - symbol:rplX "50S ribosomal protein L24... 132 7.6e-09 1
TIGR_CMR|ECH_0420 - symbol:ECH_0420 "ribosomal protein L2... 130 1.2e-08 1
UNIPROTKB|Q9KNZ5 - symbol:rplX "50S ribosomal protein L24... 126 3.3e-08 1
TIGR_CMR|VC_2585 - symbol:VC_2585 "ribosomal protein L24"... 126 3.3e-08 1
GENEDB_PFALCIPARUM|PFF0245w - symbol:PFF0245w "50S riboso... 125 4.2e-08 1
UNIPROTKB|C6KSP8 - symbol:PFF0245w "Mitochondrial ribosom... 125 4.2e-08 1
TIGR_CMR|SPO_0496 - symbol:SPO_0496 "ribosomal protein L2... 122 8.7e-08 1
DICTYBASE|DDB_G0269640 - symbol:DDB_G0269640 "39S ribosom... 116 5.4e-07 1
TIGR_CMR|SO_0242 - symbol:SO_0242 "ribosomal protein L24"... 113 7.8e-07 1
TIGR_CMR|NSE_0277 - symbol:NSE_0277 "ribosomal protein L2... 107 3.4e-06 1
ZFIN|ZDB-GENE-040718-98 - symbol:mrpl24 "mitochondrial ri... 117 3.5e-06 1
UNIPROTKB|P60624 - symbol:rplX "50S ribosomal subunit pro... 106 4.3e-06 1
GENEDB_PFALCIPARUM|PFL1150c - symbol:PFL1150c "ribosomal ... 108 0.00012 1
UNIPROTKB|Q8I5H8 - symbol:PFL1150c "Mitochondrial ribosom... 108 0.00012 1
TIGR_CMR|CJE_1864 - symbol:CJE_1864 "ribosomal protein L2... 92 0.00016 1
UNIPROTKB|F1RHJ1 - symbol:MRPL24 "Uncharacterized protein... 103 0.00053 1
UNIPROTKB|E2QS97 - symbol:MRPL24 "Uncharacterized protein... 103 0.00055 1
>TAIR|locus:2172154 [details] [associations]
symbol:RPL24 "plastid ribosomal protein L24" species:3702
"Arabidopsis thaliana" [GO:0003735 "structural constituent of
ribosome" evidence=IEA;ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0015934 "large
ribosomal subunit" evidence=ISS] [GO:0009570 "chloroplast stroma"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0032544 "plastid translation" evidence=IMP] [GO:0019288
"isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] InterPro:IPR003256
InterPro:IPR005825 PROSITE:PS01108 Pfam:PF00467 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0009941 GO:GO:0005840
GO:GO:0003735 GO:GO:0019843 EMBL:AB016879 GO:GO:0032544
Gene3D:2.30.30.30 InterPro:IPR014722 InterPro:IPR008991
SUPFAM:SSF50104 InterPro:IPR005824 SMART:SM00739 EMBL:Y09635
EMBL:BT001990 EMBL:BT006573 EMBL:AY086810 IPI:IPI00544271
RefSeq:NP_851190.1 UniGene:At.47267 ProteinModelPortal:P92959
SMR:P92959 STRING:P92959 PaxDb:P92959 PRIDE:P92959
EnsemblPlants:AT5G54600.1 GeneID:835549 KEGG:ath:AT5G54600
GeneFarm:199 TAIR:At5g54600 eggNOG:COG0198 HOGENOM:HOG000039891
InParanoid:P92959 KO:K02895 OMA:RWERKEC PhylomeDB:P92959
ProtClustDB:CLSN2680537 Genevestigator:P92959 PANTHER:PTHR12903
TIGRFAMs:TIGR01079 Uniprot:P92959
Length = 198
Score = 611 (220.1 bits), Expect = 1.3e-59, P = 1.3e-59
Identities = 120/196 (61%), Positives = 143/196 (72%)
Query: 1 MAAMAALQXXXXXXXXX-XXXFFGQRLSFP-SLSPIT-VKPTDKPCLIVVRLKRWERKEC 57
MA M+ALQ F GQRL P SLS + VKP + PCL++ +LKRWERKEC
Sbjct: 1 MATMSALQSSFTSLSLSPSSSFLGQRLISPISLSVTSPVKPAENPCLVLAKLKRWERKEC 60
Query: 58 KPNSLPVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXX 117
KPNSLP+LHKMHVK GDTVKVI+G DKGKIGE+TK+F HNST+++KD+NLKTKH+
Sbjct: 61 KPNSLPILHKMHVKFGDTVKVISGRDKGKIGEVTKIFTHNSTIVIKDVNLKTKHMKSREE 120
Query: 118 XXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIIDSAENWKK 177
APIHSSNVMLYSKE +V SRVGHKVL+DG +VRYLIKTGE+ID+ E WK
Sbjct: 121 GEPGQIVKIEAPIHSSNVMLYSKEKDVVSRVGHKVLEDGQKVRYLIKTGELIDTIEKWKL 180
Query: 178 LKEANRQEKTEVATAA 193
LKEA +E T+VA +
Sbjct: 181 LKEAKDKETTQVAVTS 196
>TIGR_CMR|BA_0121 [details] [associations]
symbol:BA_0121 "ribosomal protein L24" species:198094
"Bacillus anthracis str. Ames" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR003256 InterPro:IPR005825 PROSITE:PS01108 Pfam:PF00467
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 GO:GO:0019843 Gene3D:2.30.30.30
InterPro:IPR014722 InterPro:IPR008991 SUPFAM:SSF50104
InterPro:IPR005824 SMART:SM00739 eggNOG:COG0198
HOGENOM:HOG000039891 KO:K02895 PANTHER:PTHR12903 TIGRFAMs:TIGR01079
ProtClustDB:PRK00004 HAMAP:MF_01326_B RefSeq:NP_842689.1
RefSeq:YP_016726.1 RefSeq:YP_026407.1 ProteinModelPortal:Q81VR9
DNASU:1086419 EnsemblBacteria:EBBACT00000008351
EnsemblBacteria:EBBACT00000018007 EnsemblBacteria:EBBACT00000023262
GeneID:1086419 GeneID:2819215 GeneID:2851558 KEGG:ban:BA_0121
KEGG:bar:GBAA_0121 KEGG:bat:BAS0121 OMA:QEAPIQA
BioCyc:BANT260799:GJAJ-132-MONOMER
BioCyc:BANT261594:GJ7F-134-MONOMER Uniprot:Q81VR9
Length = 103
Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
Identities = 43/103 (41%), Positives = 57/103 (55%)
Query: 68 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXX 127
MHVK GD V+VI G DKGK G I F + V+V+ +N+ KH
Sbjct: 1 MHVKKGDKVQVITGKDKGKQGVILVAFPKQNRVIVEGVNIVKKHSKPSQLNPQGGIITKE 60
Query: 128 APIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIID 170
APIH SNVM+ + +RVG KV +DG +VR K+GE++D
Sbjct: 61 APIHVSNVMILDPKTGEPTRVGFKV-EDGKKVRIAKKSGELLD 102
>TIGR_CMR|GSU_2846 [details] [associations]
symbol:GSU_2846 "ribosomal protein L24" species:243231
"Geobacter sulfurreducens PCA" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] InterPro:IPR003256
PROSITE:PS01108 Pfam:PF00467 GO:GO:0006412 GO:GO:0005840
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0003735 GO:GO:0019843
Gene3D:2.30.30.30 InterPro:IPR014722 InterPro:IPR008991
SUPFAM:SSF50104 InterPro:IPR005824 SMART:SM00739 eggNOG:COG0198
HOGENOM:HOG000039891 KO:K02895 PANTHER:PTHR12903 TIGRFAMs:TIGR01079
ProtClustDB:PRK00004 HAMAP:MF_01326_B RefSeq:NP_953889.1
ProteinModelPortal:P60740 GeneID:2686791 KEGG:gsu:GSU2846
PATRIC:22028539 OMA:LNIVKRH BioCyc:GSUL243231:GH27-2812-MONOMER
Uniprot:P60740
Length = 108
Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 37/104 (35%), Positives = 53/104 (50%)
Query: 67 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXX 126
K H+K GDTV V+ G DK K G + ++ V+V+ +N+ +H
Sbjct: 5 KFHIKKGDTVSVVTGKDKSKTGTVLRILPKRDGVLVEGLNIVKRHTRARGNEPGGIVEKE 64
Query: 127 XAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIID 170
AP+H SNVMLY + E R +L+DG +VR +K GE D
Sbjct: 65 -APLHVSNVMLYCGKCEKPVRAKKAILEDGKKVRVCVKCGEAFD 107
>TIGR_CMR|CBU_0249 [details] [associations]
symbol:CBU_0249 "ribosomal protein L24" species:227377
"Coxiella burnetii RSA 493" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR003256 InterPro:IPR005825 PROSITE:PS01108 Pfam:PF00467
GO:GO:0006412 GO:GO:0005840 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0003735 GO:GO:0019843 Gene3D:2.30.30.30 InterPro:IPR014722
InterPro:IPR008991 SUPFAM:SSF50104 InterPro:IPR005824 SMART:SM00739
eggNOG:COG0198 KO:K02895 PANTHER:PTHR12903 TIGRFAMs:TIGR01079
HOGENOM:HOG000039892 ProtClustDB:PRK00004 HAMAP:MF_01326_B
OMA:VIQAYPA RefSeq:NP_819293.1 ProteinModelPortal:Q83ER5 SMR:Q83ER5
PRIDE:Q83ER5 GeneID:1208130 KEGG:cbu:CBU_0249 PATRIC:17929191
BioCyc:CBUR227377:GJ7S-255-MONOMER Uniprot:Q83ER5
Length = 107
Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 42/102 (41%), Positives = 56/102 (54%)
Query: 70 VKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXX-XXXXXXXXXXXXA 128
+K DTV VI G DKG+ G++ KV NS ++V+ INL KHV
Sbjct: 6 IKKDDTVIVITGRDKGRQGKVLKVLP-NSRLLVEGINLVKKHVKPNPNKNEQGGILEREL 64
Query: 129 PIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIID 170
IH SNV +Y+ + A RVG K L+DG++VR GE+ID
Sbjct: 65 SIHVSNVAIYNPAAKKADRVGIKTLEDGSKVRIFKSNGEVID 106
>TIGR_CMR|CHY_2298 [details] [associations]
symbol:CHY_2298 "ribosomal protein L24" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] InterPro:IPR003256 PROSITE:PS01108 Pfam:PF00467
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 GO:GO:0019843 Gene3D:2.30.30.30 InterPro:IPR014722
InterPro:IPR008991 SUPFAM:SSF50104 InterPro:IPR005824 SMART:SM00739
eggNOG:COG0198 HOGENOM:HOG000039891 KO:K02895 PANTHER:PTHR12903
TIGRFAMs:TIGR01079 ProtClustDB:PRK00004 HAMAP:MF_01326_B
RefSeq:YP_361107.1 ProteinModelPortal:Q3A9S7 SMR:Q3A9S7
STRING:Q3A9S7 GeneID:3726665 KEGG:chy:CHY_2298 PATRIC:21277667
OMA:VIQAYPA BioCyc:CHYD246194:GJCN-2297-MONOMER Uniprot:Q3A9S7
Length = 107
Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 40/104 (38%), Positives = 54/104 (51%)
Query: 67 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXX 126
K+ VK GD V VIAG DK K G+I +V + V+V+ +N+ +H
Sbjct: 3 KLKVKKGDMVLVIAGKDKDKKGKIVQVLPKENRVVVEGVNIVKRHTRPNPKLPQGGIVEK 62
Query: 127 XAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIID 170
APIH SNVM+ +RVG K L DG ++R K GE +D
Sbjct: 63 EAPIHVSNVMVICPSCGKPTRVGKKFLADGKKIRVCKKCGESLD 106
>TIGR_CMR|DET_0485 [details] [associations]
symbol:DET_0485 "ribosomal protein L24" species:243164
"Dehalococcoides ethenogenes 195" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015934 "large ribosomal subunit" evidence=ISS]
InterPro:IPR003256 InterPro:IPR005825 PROSITE:PS01108 Pfam:PF00467
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0019843 Gene3D:2.30.30.30
InterPro:IPR014722 InterPro:IPR008991 SUPFAM:SSF50104
InterPro:IPR005824 SMART:SM00739 eggNOG:COG0198
HOGENOM:HOG000039891 KO:K02895 PANTHER:PTHR12903 TIGRFAMs:TIGR01079
ProtClustDB:PRK00004 HAMAP:MF_01326_B RefSeq:YP_181229.1
ProteinModelPortal:Q3Z970 STRING:Q3Z970 GeneID:3230244
KEGG:det:DET0485 PATRIC:21608039 OMA:IAIADPK
BioCyc:DETH243164:GJNF-485-MONOMER Uniprot:Q3Z970
Length = 103
Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 36/103 (34%), Positives = 51/103 (49%)
Query: 68 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXX 127
M +K D V VIAG DKGK G++ F V+V+ +N+ +H
Sbjct: 1 MRLKKNDNVLVIAGKDKGKTGKVRYAFPRTDRVLVEGVNMIKRHSRARGQAKQAGIIERE 60
Query: 128 APIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIID 170
AP+H SN+ML + +R+G + L DG VRY E+ID
Sbjct: 61 APLHVSNLMLLCSKCNKPARIGSRELADGKSVRYCKSCNEVID 103
>TIGR_CMR|APH_0291 [details] [associations]
symbol:APH_0291 "ribosomal protein L24" species:212042
"Anaplasma phagocytophilum HZ" [GO:0000315 "organellar large
ribosomal subunit" evidence=ISS] [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] InterPro:IPR003256 InterPro:IPR005825 PROSITE:PS01108
Pfam:PF00467 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0019843
Gene3D:2.30.30.30 InterPro:IPR014722 InterPro:IPR008991
SUPFAM:SSF50104 InterPro:IPR005824 SMART:SM00739 eggNOG:COG0198
KO:K02895 PANTHER:PTHR12903 TIGRFAMs:TIGR01079 RefSeq:YP_504903.1
ProteinModelPortal:Q2GL48 STRING:Q2GL48 GeneID:3931200
KEGG:aph:APH_0291 PATRIC:20949156 HOGENOM:HOG000039892 OMA:DINIVTK
ProtClustDB:PRK00004 BioCyc:APHA212042:GHPM-321-MONOMER
HAMAP:MF_01326_B Uniprot:Q2GL48
Length = 104
Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
Identities = 36/103 (34%), Positives = 52/103 (50%)
Query: 70 VKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVK--DINLKTKHVXXXXXXXXXXXXXXX 127
+ +GD V VI G DKGK+G++ K+ R V+ K + L K V
Sbjct: 4 IVSGDDVIVITGSDKGKVGKVVKILRKGGRVLAKVASVALCRKSVKPSKNREGGIFSIER 63
Query: 128 APIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIID 170
I SNV + E V +RVG+K +D G +VRYL +G ++D
Sbjct: 64 F-IDISNVAFFDSEAGVRTRVGYKFVD-GKKVRYLKSSGRVLD 104
>TAIR|locus:504954880 [details] [associations]
symbol:AT5G23535 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005739
"mitochondrion" evidence=ISM] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA;ISS] [GO:0015934 "large
ribosomal subunit" evidence=ISS] InterPro:IPR003256
InterPro:IPR005825 PROSITE:PS01108 Pfam:PF00467 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
EMBL:AB025633 Gene3D:2.30.30.30 InterPro:IPR014722
InterPro:IPR008991 SUPFAM:SSF50104 InterPro:IPR005824 SMART:SM00739
eggNOG:COG0198 HOGENOM:HOG000039891 PANTHER:PTHR12903
TIGRFAMs:TIGR01079 HAMAP:MF_01326_B OMA:VIQAYPA EMBL:BT011601
EMBL:BT012239 EMBL:AK227904 IPI:IPI00524746 RefSeq:NP_680212.1
UniGene:At.44055 ProteinModelPortal:Q9LT09 SMR:Q9LT09 STRING:Q9LT09
PaxDb:Q9LT09 PRIDE:Q9LT09 EnsemblPlants:AT5G23535.1 GeneID:832419
KEGG:ath:AT5G23535 TAIR:At5g23535 InParanoid:Q9LT09
PhylomeDB:Q9LT09 ProtClustDB:CLSN2690194 Genevestigator:Q9LT09
Uniprot:Q9LT09
Length = 159
Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 35/94 (37%), Positives = 48/94 (51%)
Query: 73 GDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHS 132
GD V +I G DKG+ G I +V R + V+V+ NL KH+ AP+H+
Sbjct: 18 GDNVMIIRGKDKGETGTIKRVIRSQNRVIVEGKNLIKKHIKGGPDHEGGIFTVE-APLHA 76
Query: 133 SNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTG 166
SNV + +VG K L+DGT+VR TG
Sbjct: 77 SNVQVVDPVTGRPCKVGVKYLEDGTKVRVARGTG 110
>UNIPROTKB|P60627 [details] [associations]
symbol:rplX "50S ribosomal protein L24" species:1773
"Mycobacterium tuberculosis" [GO:0005618 "cell wall" evidence=IDA]
[GO:0040007 "growth" evidence=IMP] InterPro:IPR003256
InterPro:IPR005825 PROSITE:PS01108 Pfam:PF00467 GO:GO:0040007
GO:GO:0005618 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0006412 GO:GO:0005840 EMBL:BX842574
GO:GO:0003735 GO:GO:0019843 Gene3D:2.30.30.30 InterPro:IPR014722
InterPro:IPR008991 SUPFAM:SSF50104 InterPro:IPR005824 SMART:SM00739
eggNOG:COG0198 HOGENOM:HOG000039891 KO:K02895 PANTHER:PTHR12903
TIGRFAMs:TIGR01079 ProtClustDB:PRK00004 HAMAP:MF_01326_B
OMA:VIQAYPA PIR:F70643 RefSeq:NP_215229.1 RefSeq:NP_335160.1
RefSeq:YP_006514059.1 ProteinModelPortal:P60627 SMR:P60627
PRIDE:P60627 EnsemblBacteria:EBMYCT00000000150
EnsemblBacteria:EBMYCT00000071486 GeneID:13318604 GeneID:888421
GeneID:926033 KEGG:mtc:MT0741.1 KEGG:mtu:Rv0715 KEGG:mtv:RVBD_0715
PATRIC:18123363 TubercuList:Rv0715 Uniprot:P60627
Length = 105
Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
Identities = 35/106 (33%), Positives = 55/106 (51%)
Query: 68 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXX--- 124
M V GDTV VI+G DKG G++ + + + V+V+ +N KH
Sbjct: 1 MKVHKGDTVLVISGKDKGAKGKVLQAYPDRNRVLVEGVNRIKKHTAISTTQRGARSGGIV 60
Query: 125 XXXAPIHSSNVMLYSKEMEVASRVGHKVLDD-GTRVRYLIKTGEII 169
APIH SNVM+ + + +R+G++V ++ G RVR + G+ I
Sbjct: 61 TQEAPIHVSNVMVVDSDGK-PTRIGYRVDEETGKRVRISKRNGKDI 105
>TIGR_CMR|ECH_0420 [details] [associations]
symbol:ECH_0420 "ribosomal protein L24" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0000315 "organellar large
ribosomal subunit" evidence=ISS] [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] InterPro:IPR003256 InterPro:IPR005825 PROSITE:PS01108
Pfam:PF00467 EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 GO:GO:0019843 Gene3D:2.30.30.30
InterPro:IPR014722 InterPro:IPR008991 SUPFAM:SSF50104
InterPro:IPR005824 SMART:SM00739 eggNOG:COG0198 KO:K02895
PANTHER:PTHR12903 TIGRFAMs:TIGR01079 HOGENOM:HOG000039892
ProtClustDB:PRK00004 HAMAP:MF_01326_B OMA:VIQAYPA
RefSeq:YP_507238.1 ProteinModelPortal:Q2GH45 STRING:Q2GH45
GeneID:3927966 KEGG:ech:ECH_0420 PATRIC:20576317
BioCyc:ECHA205920:GJNR-421-MONOMER Uniprot:Q2GH45
Length = 109
Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 33/109 (30%), Positives = 58/109 (53%)
Query: 68 MHVKAGDTVKVIAGCDKGKIGEITKVFRHN------STVMVKDINLKTKHVXXXXXXXXX 121
M + AGD V VI+G DKGK+G++ KV + S +V +N+ K V
Sbjct: 3 MKIIAGDDVIVISGKDKGKMGKVIKVLKKKHCGKDVSFAIVSGVNVCRKSVKATQKSDGG 62
Query: 122 XXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIID 170
PI+ SN+ L+ + + +RVG+K + + +VR++ +G++I+
Sbjct: 63 IISVEK-PINLSNIALFDSTLGIQTRVGYKFIGE-KKVRFMKSSGKVIE 109
>UNIPROTKB|Q9KNZ5 [details] [associations]
symbol:rplX "50S ribosomal protein L24" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003735
"structural constituent of ribosome" evidence=ISS] [GO:0006412
"translation" evidence=ISS] InterPro:IPR003256 InterPro:IPR005825
PROSITE:PS01108 Pfam:PF00467 GO:GO:0006412 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005840 GO:GO:0003735 GO:GO:0019843
Gene3D:2.30.30.30 InterPro:IPR014722 InterPro:IPR008991
SUPFAM:SSF50104 InterPro:IPR005824 SMART:SM00739 eggNOG:COG0198
KO:K02895 PANTHER:PTHR12903 TIGRFAMs:TIGR01079 ProtClustDB:PRK00004
HAMAP:MF_01326_B OMA:QEAPIQA PIR:C82058 RefSeq:NP_232213.1
ProteinModelPortal:Q9KNZ5 SMR:Q9KNZ5 PRIDE:Q9KNZ5 DNASU:2615602
GeneID:2615602 KEGG:vch:VC2585 PATRIC:20084196 Uniprot:Q9KNZ5
Length = 105
Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 33/103 (32%), Positives = 52/103 (50%)
Query: 70 VKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXX-XXXXXXXXXXXXA 128
++ D V V+AG DKGK G++TKV V+V+ INL KH A
Sbjct: 5 IRQNDEVIVLAGKDKGKKGKVTKVLA-TGKVIVEGINLVKKHQKPVPAMGVQGGIVEQEA 63
Query: 129 PIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIIDS 171
I SN+ +++ + A R+G + +DG +VR+ EI+ +
Sbjct: 64 AIDVSNIAIFNAKTGKADRIGFR-FEDGKKVRFFKSNNEIVSN 105
>TIGR_CMR|VC_2585 [details] [associations]
symbol:VC_2585 "ribosomal protein L24" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR003256 InterPro:IPR005825 PROSITE:PS01108 Pfam:PF00467
GO:GO:0006412 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005840
GO:GO:0003735 GO:GO:0019843 Gene3D:2.30.30.30 InterPro:IPR014722
InterPro:IPR008991 SUPFAM:SSF50104 InterPro:IPR005824 SMART:SM00739
eggNOG:COG0198 KO:K02895 PANTHER:PTHR12903 TIGRFAMs:TIGR01079
ProtClustDB:PRK00004 HAMAP:MF_01326_B OMA:QEAPIQA PIR:C82058
RefSeq:NP_232213.1 ProteinModelPortal:Q9KNZ5 SMR:Q9KNZ5
PRIDE:Q9KNZ5 DNASU:2615602 GeneID:2615602 KEGG:vch:VC2585
PATRIC:20084196 Uniprot:Q9KNZ5
Length = 105
Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 33/103 (32%), Positives = 52/103 (50%)
Query: 70 VKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXX-XXXXXXXXXXXXA 128
++ D V V+AG DKGK G++TKV V+V+ INL KH A
Sbjct: 5 IRQNDEVIVLAGKDKGKKGKVTKVLA-TGKVIVEGINLVKKHQKPVPAMGVQGGIVEQEA 63
Query: 129 PIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIIDS 171
I SN+ +++ + A R+G + +DG +VR+ EI+ +
Sbjct: 64 AIDVSNIAIFNAKTGKADRIGFR-FEDGKKVRFFKSNNEIVSN 105
>GENEDB_PFALCIPARUM|PFF0245w [details] [associations]
symbol:PFF0245w "50S ribosomal subunit L24,
putative" species:5833 "Plasmodium falciparum" [GO:0022625
"cytosolic large ribosomal subunit" evidence=ISS]
InterPro:IPR003256 InterPro:IPR005825 PROSITE:PS01108 Pfam:PF00467
GO:GO:0006412 GO:GO:0003735 EMBL:AL844505 Gene3D:2.30.30.30
InterPro:IPR014722 InterPro:IPR008991 SUPFAM:SSF50104 GO:GO:0022625
InterPro:IPR005824 SMART:SM00739 PANTHER:PTHR12903
TIGRFAMs:TIGR01079 HAMAP:MF_01326_B RefSeq:XP_966040.1
ProteinModelPortal:C6KSP8 EnsemblProtists:PFF0245w:mRNA
GeneID:3885712 KEGG:pfa:PFF0245w EuPathDB:PlasmoDB:PF3D7_0605000
HOGENOM:HOG000281435 OMA:FEEEINS ProtClustDB:CLSZ2432297
Uniprot:C6KSP8
Length = 194
Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 39/137 (28%), Positives = 64/137 (46%)
Query: 55 KECKPNSLPVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXX 114
K KP ++ + K ++ GD VKVI+G DKGKIGE+ + + V VK N++ V
Sbjct: 33 KIIKPRNIIKMWK--IRKGDEVKVISGKDKGKIGEVLSCDKFRNMVKVKGCNMRKLFVDN 90
Query: 115 XXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIIDSAEN 174
IH SNV L ++ ++V + DD +R K+G +I
Sbjct: 91 KFVYIEKK-------IHYSNVQLIDNFLKTNTKVALRYTDDNQVIRISKKSGTVIPWPSE 143
Query: 175 WKKLKEANRQEKTEVAT 191
K ++ ++ E+ + T
Sbjct: 144 KTKEEDYDQIEENPLDT 160
>UNIPROTKB|C6KSP8 [details] [associations]
symbol:PFF0245w "Mitochondrial ribosomal protein L24,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0022625
"cytosolic large ribosomal subunit" evidence=ISS]
InterPro:IPR003256 InterPro:IPR005825 PROSITE:PS01108 Pfam:PF00467
GO:GO:0006412 GO:GO:0003735 EMBL:AL844505 Gene3D:2.30.30.30
InterPro:IPR014722 InterPro:IPR008991 SUPFAM:SSF50104 GO:GO:0022625
InterPro:IPR005824 SMART:SM00739 PANTHER:PTHR12903
TIGRFAMs:TIGR01079 HAMAP:MF_01326_B RefSeq:XP_966040.1
ProteinModelPortal:C6KSP8 EnsemblProtists:PFF0245w:mRNA
GeneID:3885712 KEGG:pfa:PFF0245w EuPathDB:PlasmoDB:PF3D7_0605000
HOGENOM:HOG000281435 OMA:FEEEINS ProtClustDB:CLSZ2432297
Uniprot:C6KSP8
Length = 194
Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 39/137 (28%), Positives = 64/137 (46%)
Query: 55 KECKPNSLPVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXX 114
K KP ++ + K ++ GD VKVI+G DKGKIGE+ + + V VK N++ V
Sbjct: 33 KIIKPRNIIKMWK--IRKGDEVKVISGKDKGKIGEVLSCDKFRNMVKVKGCNMRKLFVDN 90
Query: 115 XXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIIDSAEN 174
IH SNV L ++ ++V + DD +R K+G +I
Sbjct: 91 KFVYIEKK-------IHYSNVQLIDNFLKTNTKVALRYTDDNQVIRISKKSGTVIPWPSE 143
Query: 175 WKKLKEANRQEKTEVAT 191
K ++ ++ E+ + T
Sbjct: 144 KTKEEDYDQIEENPLDT 160
>TIGR_CMR|SPO_0496 [details] [associations]
symbol:SPO_0496 "ribosomal protein L24" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042255 "ribosome assembly" evidence=ISS] InterPro:IPR003256
InterPro:IPR005825 PROSITE:PS01108 Pfam:PF00467 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 Gene3D:2.30.30.30 InterPro:IPR014722
InterPro:IPR008991 SUPFAM:SSF50104 InterPro:IPR005824 SMART:SM00739
eggNOG:COG0198 KO:K02895 PANTHER:PTHR12903 TIGRFAMs:TIGR01079
HOGENOM:HOG000039892 ProtClustDB:PRK00004 HAMAP:MF_01326_B
OMA:QEAPIQA RefSeq:YP_165758.1 ProteinModelPortal:Q5LW47
GeneID:3195436 KEGG:sil:SPO0496 PATRIC:23374253 Uniprot:Q5LW47
Length = 103
Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 34/102 (33%), Positives = 51/102 (50%)
Query: 70 VKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAP 129
++ GD V V+AG DKGK G IT V +V +N+ +H P
Sbjct: 5 LRKGDKVVVLAGKDKGKEGTITSVDPKAGKAVVDGVNIAIRHTRQTQTSQGGRLPKAL-P 63
Query: 130 IHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIIDS 171
I SN+ L K + A+RVG ++ D +VR+ TG++ID+
Sbjct: 64 IDLSNLALLDKNGK-ATRVGFRMEGD-KKVRFAKTTGDVIDA 103
>DICTYBASE|DDB_G0269640 [details] [associations]
symbol:DDB_G0269640 "39S ribosomal protein L24,
mitochondrial" species:44689 "Dictyostelium discoideum" [GO:0006412
"translation" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR003256
InterPro:IPR005825 PROSITE:PS01108 dictyBase:DDB_G0269640
Pfam:PF00467 EMBL:AAFI02000005 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 Gene3D:2.30.30.30 InterPro:IPR014722
InterPro:IPR008991 SUPFAM:SSF50104 InterPro:IPR005824 SMART:SM00739
eggNOG:COG0198 KO:K02895 PANTHER:PTHR12903 TIGRFAMs:TIGR01079
HAMAP:MF_01326_B RefSeq:XP_646137.1 ProteinModelPortal:Q55DJ4
STRING:Q55DJ4 EnsemblProtists:DDB0190423 GeneID:8617087
KEGG:ddi:DDB_G0269640 InParanoid:Q55DJ4 OMA:SHIDPKY
ProtClustDB:CLSZ2431389 Uniprot:Q55DJ4
Length = 164
Score = 116 (45.9 bits), Expect = 5.4e-07, P = 5.4e-07
Identities = 37/117 (31%), Positives = 58/117 (49%)
Query: 69 HVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXA 128
+VK GD V++I+G DKGK G I V + +S ++V+ + L K + A
Sbjct: 21 YVK-GDKVQIISGKDKGKQGIIKSVNKKDSNLIVEGLKL-LKKLTKPNKRSKAMAYTKEA 78
Query: 129 PIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEII---DSAENWKKLKEAN 182
PIH SN+ + V +V +++D G R R + II D + N+KK + N
Sbjct: 79 PIHYSNISHIDPKYNVPCKVRFQLVD-GARERVSKISNSIIAKPDLSANFKKWRRDN 134
>TIGR_CMR|SO_0242 [details] [associations]
symbol:SO_0242 "ribosomal protein L24" species:211586
"Shewanella oneidensis MR-1" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR003256 PROSITE:PS01108 Pfam:PF00467 GO:GO:0006412
GO:GO:0005840 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0003735
GO:GO:0019843 Gene3D:2.30.30.30 InterPro:IPR014722
InterPro:IPR008991 SUPFAM:SSF50104 InterPro:IPR005824 SMART:SM00739
eggNOG:COG0198 KO:K02895 PANTHER:PTHR12903 TIGRFAMs:TIGR01079
HOGENOM:HOG000039892 ProtClustDB:PRK00004 HAMAP:MF_01326_B
OMA:QEAPIQA RefSeq:NP_715882.1 ProteinModelPortal:Q8EK58 SMR:Q8EK58
GeneID:1168125 KEGG:son:SO_0242 PATRIC:23520177 Uniprot:Q8EK58
Length = 104
Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 31/101 (30%), Positives = 50/101 (49%)
Query: 70 VKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXX-XXXXXXXXXXXXA 128
++ D V V+AG DKGK ++ +V ++V+ INL KH A
Sbjct: 5 IRRQDEVIVLAGKDKGKRAKVAQVLP-TGKLIVEGINLVKKHQKPNPQLGVAGGIVEKEA 63
Query: 129 PIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEII 169
PI +SNV +++ A RVG + +DG +VR+ E++
Sbjct: 64 PIQASNVAIFNPVTGKADRVGFR-FEDGKKVRFFKSNSELV 103
>TIGR_CMR|NSE_0277 [details] [associations]
symbol:NSE_0277 "ribosomal protein L24" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015934 "large ribosomal subunit" evidence=ISS]
[GO:0042255 "ribosome assembly" evidence=ISS] InterPro:IPR003256
InterPro:IPR005825 PROSITE:PS01108 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 GO:GO:0019843 EMBL:CP000237 GenomeReviews:CP000237_GR
Gene3D:2.30.30.30 InterPro:IPR014722 InterPro:IPR008991
SUPFAM:SSF50104 InterPro:IPR005824 SMART:SM00739
HOGENOM:HOG000039891 KO:K02895 TIGRFAMs:TIGR01079
ProtClustDB:PRK00004 HAMAP:MF_01326_B RefSeq:YP_506168.1
ProteinModelPortal:Q2GEC8 STRING:Q2GEC8 GeneID:3931698
KEGG:nse:NSE_0277 PATRIC:22680647 eggNOG:NOG292194 OMA:FKRTAEF
BioCyc:NSEN222891:GHFU-304-MONOMER Uniprot:Q2GEC8
Length = 104
Score = 107 (42.7 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 36/106 (33%), Positives = 53/106 (50%)
Query: 70 VKAGDTVKVIAGCDKGKIGEITKVF------RHNSTVMVKDINLKTKHVXXXXXXXXXXX 123
+ +GD VKVI+G + GK+G + KV R V+V D+N++ + V
Sbjct: 4 IVSGDQVKVISGNEAGKVGVVRKVLYSSVGRRKEVYVIVSDVNVR-RFVKKTQAGKKFDA 62
Query: 124 XXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEII 169
PI SNV L + + V S+VG K L DGT+ R +T E +
Sbjct: 63 KSY--PIAVSNVALLAGDGFV-SKVGFK-LKDGTKKRIFKRTAEFV 104
>ZFIN|ZDB-GENE-040718-98 [details] [associations]
symbol:mrpl24 "mitochondrial ribosomal protein L24"
species:7955 "Danio rerio" [GO:0005622 "intracellular"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
InterPro:IPR003256 InterPro:IPR005825 PROSITE:PS01108 Pfam:PF00467
ZFIN:ZDB-GENE-040718-98 GO:GO:0005739 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 EMBL:BX927401 Gene3D:2.30.30.30 InterPro:IPR014722
InterPro:IPR008991 SUPFAM:SSF50104 InterPro:IPR005824 SMART:SM00739
eggNOG:COG0198 PANTHER:PTHR12903 TIGRFAMs:TIGR01079 CTD:79590
GeneTree:ENSGT00390000014542 HOGENOM:HOG000031326
HOVERGEN:HBG093899 OMA:NTHYRYV OrthoDB:EOG4KD6MZ EMBL:BC076182
IPI:IPI00492356 RefSeq:NP_001002401.1 UniGene:Dr.9429 HSSP:Q9RXJ1
ProteinModelPortal:Q6DH02 STRING:Q6DH02 PRIDE:Q6DH02
Ensembl:ENSDART00000010862 GeneID:436674 KEGG:dre:436674
InParanoid:A3KQS2 NextBio:20831117 Bgee:Q6DH02 Uniprot:Q6DH02
Length = 216
Score = 117 (46.2 bits), Expect = 3.5e-06, P = 3.5e-06
Identities = 34/133 (25%), Positives = 65/133 (48%)
Query: 39 TDKPCLIVVR-LKRWERKECKPNSLPVLHK-MHVKAGDTVKVIAGCDKGKIGEITKVFRH 96
T++P I R L ++ K P+ ++ V GDTV+V++G +KGK G++ +V R
Sbjct: 23 TNRPWTIAARRLNPPGKRRRKVFVEPIANEDWPVVRGDTVEVLSGKEKGKQGKVAQVIRA 82
Query: 97 NSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDG 156
+ V+++ +N ++V AP+ ++ L + + + ++G
Sbjct: 83 RNWVILEGLNTHYRYVGRSGDYRGTYLASE-APLLLKDIALIDPTDRKPTEIQWRYTEEG 141
Query: 157 TRVRYLIKTGEII 169
RVR ++TG II
Sbjct: 142 ERVRVSVRTGRII 154
>UNIPROTKB|P60624 [details] [associations]
symbol:rplX "50S ribosomal subunit protein L24"
species:83333 "Escherichia coli K-12" [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA] [GO:0019843
"rRNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR003256 InterPro:IPR005825 PROSITE:PS01108
EMBL:X01563 Pfam:PF00467 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0006412
EMBL:U18997 GO:GO:0005840 GO:GO:0003735 GO:GO:0019843
Gene3D:2.30.30.30 InterPro:IPR014722 PDB:2VHM PDBsum:2VHM PDB:2RDO
PDBsum:2RDO InterPro:IPR008991 SUPFAM:SSF50104 InterPro:IPR005824
SMART:SM00739 eggNOG:COG0198 KO:K02895 PANTHER:PTHR12903
TIGRFAMs:TIGR01079 PDB:3J0T PDB:3J0W PDB:3J0Y PDB:3J11 PDB:3J12
PDB:3J14 PDB:3SGF PDB:3UOS PDBsum:3J0T PDBsum:3J0W PDBsum:3J0Y
PDBsum:3J11 PDBsum:3J12 PDBsum:3J14 PDBsum:3SGF PDBsum:3UOS
PDB:1P85 PDB:1P86 PDB:1VS6 PDB:1VS8 PDB:1VT2 PDB:2AW4 PDB:2AWB
PDB:2GYA PDB:2GYC PDB:2I2T PDB:2I2V PDB:2J28 PDB:2QAM PDB:2QAO
PDB:2QBA PDB:2QBC PDB:2QBE PDB:2QBG PDB:2QBI PDB:2QBK PDB:2QOV
PDB:2QOX PDB:2QOZ PDB:2QP1 PDB:2VHN PDB:2WWQ PDB:2Z4L PDB:2Z4N
PDB:3DF2 PDB:3DF4 PDB:3E1B PDB:3E1D PDB:3FIK PDB:3I1N PDB:3I1P
PDB:3I1R PDB:3I1T PDB:3I20 PDB:3I22 PDB:3IZT PDB:3IZU PDB:3J01
PDB:3J19 PDB:3KCR PDB:3OAS PDB:3OAT PDB:3OFC PDB:3OFD PDB:3OFQ
PDB:3OFR PDB:3OFZ PDB:3OG0 PDB:3ORB PDB:3R8S PDB:3R8T PDB:4GAR
PDB:4GAU PDBsum:1P85 PDBsum:1P86 PDBsum:1VS6 PDBsum:1VS8
PDBsum:1VT2 PDBsum:2AW4 PDBsum:2AWB PDBsum:2GYA PDBsum:2GYC
PDBsum:2I2T PDBsum:2I2V PDBsum:2J28 PDBsum:2QAM PDBsum:2QAO
PDBsum:2QBA PDBsum:2QBC PDBsum:2QBE PDBsum:2QBG PDBsum:2QBI
PDBsum:2QBK PDBsum:2QOV PDBsum:2QOX PDBsum:2QOZ PDBsum:2QP1
PDBsum:2VHN PDBsum:2WWQ PDBsum:2Z4L PDBsum:2Z4N PDBsum:3DF2
PDBsum:3DF4 PDBsum:3E1B PDBsum:3E1D PDBsum:3FIK PDBsum:3I1N
PDBsum:3I1P PDBsum:3I1R PDBsum:3I1T PDBsum:3I20 PDBsum:3I22
PDBsum:3IZT PDBsum:3IZU PDBsum:3J01 PDBsum:3J19 PDBsum:3KCR
PDBsum:3OAS PDBsum:3OAT PDBsum:3OFC PDBsum:3OFD PDBsum:3OFQ
PDBsum:3OFR PDBsum:3OFZ PDBsum:3OG0 PDBsum:3ORB PDBsum:3R8S
PDBsum:3R8T PDBsum:4GAR PDBsum:4GAU PDB:3BBX PDBsum:3BBX PDB:2VRH
PDBsum:2VRH HOGENOM:HOG000039892 ProtClustDB:PRK00004
HAMAP:MF_01326_B OMA:QEAPIQA EMBL:M10195 PIR:H65123
RefSeq:NP_417768.1 RefSeq:YP_492123.1 ProteinModelPortal:P60624
SMR:P60624 DIP:DIP-47846N IntAct:P60624 MINT:MINT-1294921
PaxDb:P60624 PRIDE:P60624 EnsemblBacteria:EBESCT00000001889
EnsemblBacteria:EBESCT00000015488 GeneID:12934409 GeneID:947810
KEGG:ecj:Y75_p3867 KEGG:eco:b3309 PATRIC:32122050 EchoBASE:EB0877
EcoGene:EG10884 BioCyc:EcoCyc:EG10884-MONOMER
BioCyc:ECOL316407:JW3271-MONOMER EvolutionaryTrace:P60624
Genevestigator:P60624 Uniprot:P60624
Length = 104
Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 32/101 (31%), Positives = 47/101 (46%)
Query: 70 VKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXX-XXXXXXXA 128
++ D V V+ G DKGK G++ V + V+V+ INL KH A
Sbjct: 5 IRRDDEVIVLTGKDKGKRGKVKNVLS-SGKVIVEGINLVKKHQKPVPALNQPGGIVEKEA 63
Query: 129 PIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEII 169
I SNV +++ A RVG + +DG +VR+ E I
Sbjct: 64 AIQVSNVAIFNAATGKADRVGFR-FEDGKKVRFFKSNSETI 103
>GENEDB_PFALCIPARUM|PFL1150c [details] [associations]
symbol:PFL1150c "ribosomal protein L24,
putative" species:5833 "Plasmodium falciparum" [GO:0042254
"ribosome biogenesis" evidence=ISS] [GO:0022625 "cytosolic large
ribosomal subunit" evidence=ISS] InterPro:IPR003256 Pfam:PF00467
GO:GO:0006412 GO:GO:0042254 GO:GO:0003735 EMBL:AE014188
Gene3D:2.30.30.30 InterPro:IPR014722 InterPro:IPR008991
SUPFAM:SSF50104 GO:GO:0022625 InterPro:IPR005824 SMART:SM00739
PANTHER:PTHR12903 TIGRFAMs:TIGR01079 HAMAP:MF_01326_B
RefSeq:XP_001350636.1 ProteinModelPortal:Q8I5H8
EnsemblProtists:PFL1150c:mRNA GeneID:811282 KEGG:pfa:PFL1150c
EuPathDB:PlasmoDB:PF3D7_1223900 HOGENOM:HOG000281072 OMA:EMPIHIT
ProtClustDB:CLSZ2445030 Uniprot:Q8I5H8
Length = 227
Score = 108 (43.1 bits), Expect = 0.00012, P = 0.00012
Identities = 35/133 (26%), Positives = 58/133 (43%)
Query: 54 RKECKPNSLPVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVX 113
R++ +P L + ++++ GD VKV+ G DK K G + + +TV V N+K K
Sbjct: 40 REQNQPKRLDLSKYLNIEVGDLVKVLYGPDKDKEGLVLSINPKRNTVTVDGCNMK-KSAW 98
Query: 114 XXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIIDSAE 173
PIH +NV L + + V + + +G VR +G +
Sbjct: 99 NVTDNKKGSIITQEMPIHITNVSLLDPISKKPTVVKRRYMMNGECVRISKISGCAMPEPV 158
Query: 174 NWKKLKEANRQEK 186
+ LKE N E+
Sbjct: 159 HKNILKEQNNYER 171
>UNIPROTKB|Q8I5H8 [details] [associations]
symbol:PFL1150c "Mitochondrial ribosomal protein L24-2,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0022625
"cytosolic large ribosomal subunit" evidence=ISS] [GO:0042254
"ribosome biogenesis" evidence=ISS] InterPro:IPR003256 Pfam:PF00467
GO:GO:0006412 GO:GO:0042254 GO:GO:0003735 EMBL:AE014188
Gene3D:2.30.30.30 InterPro:IPR014722 InterPro:IPR008991
SUPFAM:SSF50104 GO:GO:0022625 InterPro:IPR005824 SMART:SM00739
PANTHER:PTHR12903 TIGRFAMs:TIGR01079 HAMAP:MF_01326_B
RefSeq:XP_001350636.1 ProteinModelPortal:Q8I5H8
EnsemblProtists:PFL1150c:mRNA GeneID:811282 KEGG:pfa:PFL1150c
EuPathDB:PlasmoDB:PF3D7_1223900 HOGENOM:HOG000281072 OMA:EMPIHIT
ProtClustDB:CLSZ2445030 Uniprot:Q8I5H8
Length = 227
Score = 108 (43.1 bits), Expect = 0.00012, P = 0.00012
Identities = 35/133 (26%), Positives = 58/133 (43%)
Query: 54 RKECKPNSLPVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVX 113
R++ +P L + ++++ GD VKV+ G DK K G + + +TV V N+K K
Sbjct: 40 REQNQPKRLDLSKYLNIEVGDLVKVLYGPDKDKEGLVLSINPKRNTVTVDGCNMK-KSAW 98
Query: 114 XXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIIDSAE 173
PIH +NV L + + V + + +G VR +G +
Sbjct: 99 NVTDNKKGSIITQEMPIHITNVSLLDPISKKPTVVKRRYMMNGECVRISKISGCAMPEPV 158
Query: 174 NWKKLKEANRQEK 186
+ LKE N E+
Sbjct: 159 HKNILKEQNNYER 171
>TIGR_CMR|CJE_1864 [details] [associations]
symbol:CJE_1864 "ribosomal protein L24" species:195099
"Campylobacter jejuni RM1221" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0042254 "ribosome biogenesis"
evidence=ISS] InterPro:IPR003256 InterPro:IPR005825 PROSITE:PS01108
Pfam:PF00467 GO:GO:0006412 GO:GO:0005840 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0003735 GO:GO:0019843
Gene3D:2.30.30.30 InterPro:IPR014722 InterPro:IPR008991
SUPFAM:SSF50104 InterPro:IPR005824 SMART:SM00739 eggNOG:COG0198
HOGENOM:HOG000039891 KO:K02895 PANTHER:PTHR12903 TIGRFAMs:TIGR01079
HAMAP:MF_01326_B RefSeq:YP_179834.1 ProteinModelPortal:Q5HSA1
SMR:Q5HSA1 STRING:Q5HSA1 GeneID:3232491 KEGG:cjr:CJE1864
PATRIC:20045560 OMA:EGSIHAS ProtClustDB:PRK12281
BioCyc:CJEJ195099:GJC0-1903-MONOMER Uniprot:Q5HSA1
Length = 77
Score = 92 (37.4 bits), Expect = 0.00016, P = 0.00016
Identities = 22/69 (31%), Positives = 33/69 (47%)
Query: 67 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXX 126
K+ +K GD+VKVI G DKGK G++ V+ V+V+ + K +
Sbjct: 4 KLKIKKGDSVKVITGDDKGKTGKVLAVYPKTLKVVVEGCKIAKKAIKPSEKNPNGGFINK 63
Query: 127 XAPIHSSNV 135
P+ SNV
Sbjct: 64 EMPMDISNV 72
>UNIPROTKB|F1RHJ1 [details] [associations]
symbol:MRPL24 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005739 "mitochondrion" evidence=IEA] [GO:0005840
"ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
InterPro:IPR003256 InterPro:IPR005825 PROSITE:PS01108 Pfam:PF00467
GO:GO:0005739 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
Gene3D:2.30.30.30 InterPro:IPR014722 InterPro:IPR008991
SUPFAM:SSF50104 InterPro:IPR005824 SMART:SM00739 PANTHER:PTHR12903
TIGRFAMs:TIGR01079 HAMAP:MF_01326_B CTD:79590
GeneTree:ENSGT00390000014542 OMA:NTHYRYV EMBL:CU582900
RefSeq:NP_001231376.1 RefSeq:NP_001231377.1 UniGene:Ssc.2929
Ensembl:ENSSSCT00000007086 GeneID:100156363 KEGG:ssc:100156363
Uniprot:F1RHJ1
Length = 216
Score = 103 (41.3 bits), Expect = 0.00053, P = 0.00053
Identities = 28/105 (26%), Positives = 48/105 (45%)
Query: 69 HVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXA 128
H+ GD V+++ G D GK G++ +V R + V+V+ +N ++V A
Sbjct: 55 HLFCGDKVEILEGKDAGKQGKVVQVIRQRNWVVVEGLNTHYRYVGKTVDYRGTMIPSE-A 113
Query: 129 PIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIIDSAE 173
P+ + V L + V + + G RVR ++G II E
Sbjct: 114 PLLHNQVKLVDPTDRKPTDVEWRFTEAGERVRVSTRSGRIIPKPE 158
>UNIPROTKB|E2QS97 [details] [associations]
symbol:MRPL24 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] InterPro:IPR003256 InterPro:IPR005825 PROSITE:PS01108
Pfam:PF00467 GO:GO:0005739 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 Gene3D:2.30.30.30 InterPro:IPR014722
InterPro:IPR008991 SUPFAM:SSF50104 InterPro:IPR005824 SMART:SM00739
PANTHER:PTHR12903 TIGRFAMs:TIGR01079 HAMAP:MF_01326_B
GeneTree:ENSGT00390000014542 OMA:NTHYRYV EMBL:AAEX03005314
Ensembl:ENSCAFT00000026511 Uniprot:E2QS97
Length = 219
Score = 103 (41.3 bits), Expect = 0.00055, P = 0.00055
Identities = 27/101 (26%), Positives = 47/101 (46%)
Query: 69 HVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXA 128
H+ GDTV+++ G D GK G++ +V R + V+++ +N ++V A
Sbjct: 55 HLFCGDTVEILEGKDAGKQGKVVQVIRQRNWVVLEGLNTHYRYVGKTAESRGTMIPSE-A 113
Query: 129 PIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEII 169
P+ V L + V + + G RVR ++G II
Sbjct: 114 PLLHHQVKLVDPVDRKPTEVEWRFTEAGERVRVSSRSGRII 154
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.131 0.381 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 193 166 0.00097 107 3 11 22 0.38 32
30 0.46 34
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 25
No. of states in DFA: 596 (63 KB)
Total size of DFA: 149 KB (2090 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 13.41u 0.21s 13.62t Elapsed: 00:00:01
Total cpu time: 13.41u 0.21s 13.62t Elapsed: 00:00:01
Start: Mon May 20 22:35:39 2013 End: Mon May 20 22:35:40 2013