Query 029417
Match_columns 193
No_of_seqs 222 out of 1416
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 20:42:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029417.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029417hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bbo_W Ribosomal protein L24; 100.0 3E-72 1E-76 468.8 -3.7 191 1-192 1-191 (191)
2 3v2d_Y 50S ribosomal protein L 100.0 3.6E-43 1.2E-47 271.9 11.6 108 66-173 3-110 (110)
3 3r8s_U 50S ribosomal protein L 100.0 3.9E-40 1.3E-44 251.9 11.0 100 68-169 2-102 (102)
4 2ftc_N Mitochondrial ribosomal 100.0 5.1E-39 1.7E-43 243.4 12.0 96 73-169 1-96 (96)
5 2zjr_R 50S ribosomal protein L 100.0 1.8E-40 6.1E-45 258.4 3.2 102 68-170 14-115 (115)
6 1vq8_T 50S ribosomal protein L 100.0 6.9E-33 2.4E-37 217.2 4.0 102 19-149 10-111 (120)
7 3j21_U 50S ribosomal protein L 100.0 2.2E-32 7.4E-37 214.7 4.7 103 19-150 13-115 (121)
8 3u5e_Y L33, YL33, 60S ribosoma 100.0 3.1E-31 1E-35 209.6 3.7 97 19-144 17-113 (127)
9 4a17_S RPL26, 60S ribosomal pr 100.0 4.9E-31 1.7E-35 210.2 3.3 97 19-144 16-112 (135)
10 3iz5_Y 60S ribosomal protein L 100.0 3E-30 1E-34 208.7 3.1 97 19-144 16-112 (150)
11 2zkr_t 60S ribosomal protein L 100.0 4.2E-30 1.4E-34 207.1 3.6 111 19-161 16-127 (145)
12 1nz9_A Transcription antitermi 98.2 1.8E-06 6E-11 58.3 5.2 35 69-103 4-38 (58)
13 3p8b_B Transcription antitermi 97.5 9.4E-05 3.2E-09 58.2 4.6 76 48-141 73-148 (152)
14 2e6z_A Transcription elongatio 97.0 0.0002 6.8E-09 48.8 1.7 33 69-103 7-39 (59)
15 2do3_A Transcription elongatio 96.8 0.0013 4.5E-08 46.8 4.3 38 69-107 17-54 (69)
16 2jvv_A Transcription antitermi 96.7 0.0016 5.3E-08 52.4 4.6 35 69-103 127-161 (181)
17 2ckk_A KIN17; beta barrel, rib 96.6 0.002 7E-08 50.1 4.8 33 71-103 72-104 (127)
18 2xhc_A Transcription antitermi 95.3 0.017 5.9E-07 51.7 4.8 36 68-103 297-332 (352)
19 1m1h_A Transcription antitermi 94.7 0.0053 1.8E-07 52.6 0.0 37 67-103 192-228 (248)
20 3iz5_N 60S ribosomal protein L 89.9 0.21 7.1E-06 39.4 3.1 36 70-106 7-42 (134)
21 2joy_A 50S ribosomal protein L 89.8 0.18 6.1E-06 37.3 2.6 36 70-106 4-39 (96)
22 4a18_N RPL27, ribosomal protei 89.3 0.5 1.7E-05 37.7 5.0 40 70-109 5-50 (144)
23 4a18_F RPL14; ribosome, eukary 89.2 0.54 1.8E-05 36.7 5.0 52 70-140 7-58 (126)
24 3izc_N 60S ribosomal protein R 88.2 0.3 1E-05 38.7 2.9 35 70-105 15-49 (138)
25 3j21_5 50S ribosomal protein L 87.0 0.33 1.1E-05 35.1 2.4 36 70-106 4-39 (83)
26 2e70_A Transcription elongatio 86.1 0.75 2.6E-05 32.6 3.8 31 71-103 19-49 (71)
27 1qp2_A Protein (PSAE protein); 73.6 2.7 9.2E-05 29.8 3.1 38 70-107 2-45 (70)
28 2oug_A Transcriptional activat 71.8 0.0036 1.2E-07 49.1 -13.6 32 69-101 109-140 (162)
29 3iz6_D 40S ribosomal protein S 68.1 4.9 0.00017 34.8 4.2 37 68-104 173-212 (265)
30 3j20_E 30S ribosomal protein S 64.5 3.8 0.00013 35.1 2.8 37 68-104 177-217 (243)
31 4a18_E RPL6; ribosome, eukaryo 63.6 5.6 0.00019 33.0 3.5 63 69-137 44-109 (191)
32 2xzm_W 40S ribosomal protein S 62.1 11 0.00038 32.5 5.3 37 68-104 175-214 (260)
33 3kbg_A 30S ribosomal protein S 59.6 7.1 0.00024 32.8 3.5 37 67-103 136-176 (213)
34 3bbo_X Ribosomal protein L27; 58.0 2.1 7.2E-05 35.7 0.0 24 4-27 8-32 (198)
35 3u5c_E RP5, S7, YS6, 40S ribos 54.5 6.2 0.00021 34.1 2.3 36 68-103 173-211 (261)
36 1at0_A 17-hedgehog; developmen 49.3 24 0.00081 26.9 4.7 15 68-82 90-104 (145)
37 3iz5_G 60S ribosomal protein L 48.1 7.7 0.00026 32.8 1.9 63 69-137 74-139 (219)
38 1jb0_E Photosystem 1 reaction 47.7 22 0.00074 25.3 3.9 38 70-107 1-45 (75)
39 2zjr_M 50S ribosomal protein L 47.6 29 0.00098 28.2 5.1 87 60-164 22-120 (166)
40 4a17_P RPL21, 60S ribosomal pr 42.9 23 0.00079 28.4 3.8 47 69-115 33-99 (157)
41 1zuy_A Myosin-5 isoform; SH3 d 42.5 21 0.00072 22.1 3.0 16 68-83 18-33 (58)
42 2vc8_A Enhancer of mRNA-decapp 41.4 64 0.0022 23.4 5.7 34 72-105 8-42 (84)
43 1yfb_A Transition state regula 41.4 19 0.00065 24.0 2.7 24 47-81 24-47 (59)
44 3izc_G 60S ribosomal protein R 37.9 16 0.00054 29.9 2.2 63 69-137 33-98 (176)
45 2g6f_X RHO guanine nucleotide 37.4 19 0.00065 22.6 2.1 15 68-82 21-35 (59)
46 2ew3_A SH3-containing GRB2-lik 37.2 19 0.00064 23.7 2.1 15 68-82 20-34 (68)
47 2l66_A SSO7C4, transcriptional 36.2 34 0.0012 21.7 3.2 25 47-82 14-38 (53)
48 1zuu_A BZZ1 protein; SH3 domai 35.1 29 0.00099 21.5 2.7 16 68-83 18-33 (58)
49 1uti_A GRB2-related adaptor pr 34.4 23 0.00078 22.1 2.1 15 68-82 18-32 (58)
50 3iz5_U 60S ribosomal protein L 34.0 23 0.00078 28.7 2.5 34 69-102 33-76 (164)
51 2ak5_A RHO guanine nucleotide 33.7 23 0.0008 22.5 2.1 16 68-83 23-38 (64)
52 1dj7_B Ferredoxin thioredoxin 33.7 26 0.00087 25.0 2.4 26 71-96 2-41 (75)
53 2jz2_A SSL0352 protein; SH3-li 33.5 47 0.0016 23.1 3.7 40 70-109 2-43 (66)
54 2bzy_A CRK-like protein, CRKL 33.1 24 0.00082 22.8 2.1 15 68-82 20-34 (67)
55 1ruw_A Myosin-3 isoform, MYO3; 33.0 38 0.0013 21.8 3.1 15 68-82 20-34 (69)
56 2vwf_A Growth factor receptor- 32.8 25 0.00086 21.8 2.1 15 68-82 19-33 (58)
57 2nwm_A Vinexin; cell adhesion; 32.7 25 0.00084 22.9 2.1 16 68-83 18-33 (65)
58 3dcl_A TM1086; SAD, structural 32.6 57 0.0019 28.5 4.9 33 71-103 85-117 (284)
59 2eyx_A V-CRK sarcoma virus CT1 32.4 25 0.00085 22.8 2.1 14 69-82 26-39 (67)
60 2xmf_A Myosin 1E SH3; motor pr 32.3 26 0.00088 22.0 2.1 15 68-82 22-36 (60)
61 2a28_A BZZ1 protein; SH3 domai 32.3 47 0.0016 20.3 3.4 15 68-82 17-31 (54)
62 1d7q_A Translation initiation 31.7 47 0.0016 26.1 3.9 29 70-98 70-98 (143)
63 3izc_a 60S ribosomal protein R 31.6 2.9 0.0001 33.0 -3.1 39 70-108 5-49 (136)
64 2gnc_A SLIT-ROBO RHO GTPase-ac 31.5 27 0.00092 22.0 2.1 14 68-81 23-36 (60)
65 2x3w_D Syndapin I, protein kin 31.4 34 0.0012 21.3 2.6 14 68-81 20-33 (60)
66 2yuo_A CIP85, RUN and TBC1 dom 31.0 27 0.00092 23.2 2.1 14 68-81 24-37 (78)
67 1w70_A Neutrophil cytosol fact 30.7 28 0.00097 21.9 2.1 16 68-83 21-36 (60)
68 1sem_A SEM-5; SRC-homology 3 ( 30.7 48 0.0016 20.4 3.2 15 68-82 19-33 (58)
69 4b6m_A Tubulin-specific chaper 30.6 45 0.0015 23.9 3.4 24 69-95 5-28 (84)
70 3c0c_A Endophilin-A2; endocyto 30.6 28 0.00095 22.9 2.1 16 68-83 30-45 (73)
71 1x2k_A OSTF1, osteoclast stimu 30.3 32 0.0011 22.2 2.4 14 68-81 24-37 (68)
72 2iim_A Proto-oncogene tyrosine 30.2 34 0.0012 21.6 2.5 14 68-81 23-36 (62)
73 1j3t_A Intersectin 2; beta bar 29.9 27 0.00092 23.0 2.0 14 68-81 27-40 (74)
74 2ege_A Uncharacterized protein 29.8 34 0.0012 22.7 2.5 13 68-80 31-43 (75)
75 2dl8_A SLIT-ROBO RHO GTPase-ac 29.6 30 0.001 22.7 2.1 14 68-81 26-39 (72)
76 2dgy_A MGC11102 protein; EIF-1 29.2 48 0.0016 24.8 3.5 28 70-97 54-82 (111)
77 1jt8_A EIF-1A, probable transl 29.2 21 0.00071 26.5 1.4 44 43-97 43-87 (102)
78 1whl_A Cylindromatosis tumor s 29.0 43 0.0015 24.2 3.1 27 69-95 7-34 (95)
79 2dl3_A Sorbin and SH3 domain-c 28.9 36 0.0012 21.8 2.4 14 68-81 24-37 (68)
80 1zx6_A YPR154WP; SH3 domain, p 28.7 32 0.0011 21.4 2.1 15 68-82 19-33 (58)
81 3eg3_A Proto-oncogene tyrosine 28.6 32 0.0011 21.5 2.1 13 68-80 22-34 (63)
82 3r8s_P 50S ribosomal protein L 28.6 1.9E+02 0.0065 21.8 7.0 67 53-138 7-83 (114)
83 2oqk_A Putative translation in 28.5 47 0.0016 24.8 3.4 43 44-97 56-98 (117)
84 2epd_A RHO GTPase-activating p 28.5 33 0.0011 22.8 2.2 14 68-81 27-40 (76)
85 1vhy_A Hypothetical protein HI 28.0 44 0.0015 27.9 3.4 49 48-103 21-69 (257)
86 3bbo_G Ribosomal protein L4; l 28.0 13 0.00043 32.6 0.0 25 4-28 1-25 (293)
87 1csk_A C-SRC SH3 domain; phosp 27.9 38 0.0013 22.0 2.4 13 68-80 28-40 (71)
88 4e8b_A Ribosomal RNA small sub 27.7 47 0.0016 27.6 3.5 48 47-101 18-65 (251)
89 3udc_A Small-conductance mecha 27.6 42 0.0014 28.1 3.2 21 70-95 129-149 (285)
90 1k1z_A VAV; SH3, proto-oncogen 27.5 57 0.0019 21.5 3.3 15 68-82 35-49 (78)
91 2d8h_A SH3YL1 protein; SH3 dom 27.5 58 0.002 21.6 3.4 17 67-83 33-49 (80)
92 2glw_A PHS018, 92AA long hypot 27.1 41 0.0014 24.2 2.7 22 48-80 63-84 (92)
93 2k52_A Uncharacterized protein 27.0 78 0.0027 21.2 4.0 24 70-103 46-69 (80)
94 1w1f_A Tyrosine-protein kinase 27.0 44 0.0015 21.1 2.6 14 68-81 24-37 (65)
95 2ysq_A RHO guanine nucleotide 26.7 39 0.0013 22.6 2.4 14 68-81 27-40 (81)
96 3iz5_a 60S ribosomal protein L 26.6 3 0.0001 32.9 -3.8 39 70-108 5-49 (136)
97 1gcq_C VAV proto-oncogene; SH3 26.4 68 0.0023 20.6 3.5 14 68-81 27-40 (70)
98 2zzd_A Thiocyanate hydrolase s 26.3 48 0.0016 25.6 3.1 26 69-94 36-71 (126)
99 3izc_U 60S ribosomal protein R 26.0 54 0.0019 26.3 3.4 34 69-102 33-76 (160)
100 2ydl_A SH3 domain-containing k 25.7 38 0.0013 22.3 2.1 14 68-81 19-32 (69)
101 3tee_A Flagella basal BODY P-r 25.2 45 0.0015 27.4 2.9 36 68-104 139-186 (219)
102 2lcs_A NAP1-binding protein 2; 25.0 45 0.0016 22.1 2.4 14 68-81 22-35 (73)
103 1uhf_A Intersectin 2; beta bar 24.9 45 0.0015 21.6 2.4 13 68-80 25-37 (69)
104 2k9g_A SH3 domain-containing k 24.8 41 0.0014 21.9 2.1 14 68-81 26-39 (73)
105 1vhk_A Hypothetical protein YQ 24.6 58 0.002 27.4 3.5 28 70-97 37-64 (268)
106 3kw2_A Probable R-RNA methyltr 24.4 54 0.0019 27.4 3.3 49 47-102 17-65 (257)
107 2ebp_A SAM and SH3 domain-cont 24.1 61 0.0021 21.4 3.0 16 68-83 28-43 (73)
108 1z85_A Hypothetical protein TM 24.1 56 0.0019 27.1 3.3 47 48-102 27-73 (234)
109 1yn8_A NBP2, NAP1-binding prot 23.9 49 0.0017 20.4 2.3 14 68-81 18-31 (59)
110 3j21_R 50S ribosomal protein L 23.7 80 0.0027 23.3 3.7 34 69-102 34-77 (97)
111 2dl7_A KIAA0769 protein; SH3 d 23.5 45 0.0015 21.8 2.1 14 68-81 25-38 (73)
112 2dil_A Proline-serine-threonin 23.0 46 0.0016 21.4 2.1 14 68-81 25-38 (69)
113 2dmo_A Neutrophil cytosol fact 22.8 40 0.0014 21.8 1.8 14 68-81 24-37 (68)
114 1nm7_A Peroxisomal membrane pr 22.5 80 0.0027 21.0 3.3 14 69-82 26-39 (69)
115 2csi_A RIM-BP2, RIM binding pr 22.3 92 0.0031 20.5 3.6 15 68-82 31-45 (76)
116 4a4f_A SurviVal of motor neuro 22.2 1.6E+02 0.0053 19.2 4.7 36 68-103 7-43 (64)
117 2oi3_A Tyrosine-protein kinase 22.1 44 0.0015 22.4 1.9 14 68-81 42-55 (86)
118 3gqh_A Preneck appendage prote 22.0 26 0.00091 28.3 0.9 33 137-169 5-37 (163)
119 1uhc_A KIAA1010 protein; beta 21.9 76 0.0026 21.0 3.1 15 68-82 30-44 (79)
120 2dbm_A SH3-containing GRB2-lik 21.8 33 0.0011 22.5 1.2 16 68-83 24-39 (73)
121 2dlp_A KIAA1783 protein; SH3 d 21.8 44 0.0015 22.6 1.9 13 68-80 25-37 (85)
122 1oot_A Hypothetical 40.4 kDa p 21.6 91 0.0031 19.3 3.3 15 68-82 20-34 (60)
123 1vq8_Q 50S ribosomal protein L 21.6 94 0.0032 22.8 3.7 35 69-103 33-77 (96)
124 2enm_A Sorting nexin-9; SH3-li 21.4 86 0.003 20.5 3.3 14 68-81 27-40 (77)
125 2v1r_A Peroxisomal membrane pr 21.4 59 0.002 21.4 2.5 15 68-82 32-46 (80)
126 1x69_A Cortactin isoform A; SH 21.3 50 0.0017 21.9 2.1 14 68-81 34-47 (79)
127 2fei_A CD2-associated protein; 21.3 35 0.0012 22.2 1.2 14 68-81 18-31 (65)
128 2ega_A SH3 and PX domain-conta 20.9 37 0.0013 21.9 1.3 14 68-81 25-38 (70)
129 1i07_A Epidermal growth factor 20.8 58 0.002 20.3 2.2 14 68-81 18-31 (60)
130 2l0a_A STAM-1, signal transduc 20.8 47 0.0016 22.2 1.9 13 68-80 34-46 (72)
131 2vkn_A Protein SSU81; membrane 20.7 73 0.0025 20.5 2.7 13 68-80 24-36 (70)
132 2jt4_A Cytoskeleton assembly c 20.6 86 0.0029 20.0 3.1 14 68-81 23-36 (71)
133 3qyh_B CO-type nitrIle hydrata 20.6 68 0.0023 26.7 3.1 27 68-94 129-165 (219)
134 1wxt_A Hypothetical protein FL 20.6 64 0.0022 20.7 2.4 13 68-80 24-36 (68)
135 1jqq_A PEX13P, peroxisomal mem 20.5 62 0.0021 22.1 2.5 16 68-83 32-47 (92)
136 2dl5_A KIAA0769 protein; SH3 d 20.5 71 0.0024 21.2 2.7 16 68-83 30-45 (78)
137 4he6_A Peptidase family U32; u 20.1 1.1E+02 0.0037 21.1 3.7 20 87-106 9-28 (89)
138 2da9_A SH3-domain kinase bindi 20.0 51 0.0017 21.2 1.9 14 68-81 24-37 (70)
No 1
>3bbo_W Ribosomal protein L24; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=3e-72 Score=468.77 Aligned_cols=191 Identities=64% Similarity=0.969 Sum_probs=108.4
Q ss_pred ChhhhhhhhhccccccccccccccccCCCCCCCcccCCCCcceEEecCCCHHHHHhhCCCCCCcccccceeeCCEEEEee
Q 029417 1 MAAMAALQSSMTSLSISSNSFFGQRLSFPSLSPITVKPTDKPCLIVVRLKRWERKECKPNSLPVLHKMHVKAGDTVKVIA 80 (193)
Q Consensus 1 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~k~lR~k~~~rs~p~~~k~~IkkGD~V~VI~ 80 (193)
|||| ||||||++||||+|+||||||+|.+.++.+.+++.++|+++++|++|||++|++|++|+..+|+|++||+|+||+
T Consensus 1 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lr~k~~~rslP~~~kmkIkKGD~V~VIa 79 (191)
T 3bbo_W 1 MAAM-VLQSSFTSLSLSSNSFLGQRLFPSPTTLQVKTEGHSPCLIVMRIKRWERKDCKPNSLPKLHKRHVKVGDTVKVIS 79 (191)
T ss_dssp ---------------------------------------------------------------CTTSCCSCCSSCEEECS
T ss_pred Ccch-hhhhhhhccccccccccCcccCCCccccCcccccCCceeeEecccHHHHHHhCCCCCCccccCeeecCCEEEEee
Confidence 8999 999999999999999999999988876667999999999999999999999999999998999999999999999
Q ss_pred cCCCCeeeEEEEEEccCCEEEEeceeeeeeeecCCcccCCceeEEEeecCcCCCeeeeecCCCCeeeEEEEEccCCcEEE
Q 029417 81 GCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQIIKIEAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVR 160 (193)
Q Consensus 81 GkdKGK~GkV~~V~~~~n~ViVEGvN~~kkhvK~~~~~~~GgIi~~E~PIh~SNV~Lv~p~~~kptRVg~r~~edGkKvR 160 (193)
|+||||+|+|++|++++|+|+|||||++++|+||++.+++|||+++|+|||+|||+|+||++++|+||+|++++||+|||
T Consensus 80 GkDKGK~GkVl~V~~k~~rViVEGVN~vkKH~Kp~~~~~~GgIv~kEaPIhiSNV~Lvdp~~gkptRVg~k~~edGkKVR 159 (191)
T 3bbo_W 80 GGEKGKIGEISKIHKHNSTVIIKDLNFKTKHVKSKEEGEQGQIIKIEAAIHSSNVMLILKEQEVADRVGHKILEDVRKVR 159 (191)
T ss_dssp SSSTTCCCSCCCCCSSSCCCCCSSCCCCCCBCCSCCSSSCCBSSCCCCCCCGGGEEECSSSSCCCCCCCCCSSSCCCCCS
T ss_pred cCCCCceEEEEEEECCCCEEEEeCCEEEEEecCCcccCCCCCEEEEecCcCHHHeEEEeccCCCceEEEEEEccCCcEEE
Confidence 99999999999999999999999999999999999888899999999999999999999999999999999989999999
Q ss_pred EEcccCcccccchhhhhhhcccccceeeeccc
Q 029417 161 YLIKTGEIIDSAENWKKLKEANRQEKTEVATA 192 (193)
Q Consensus 161 v~kksg~~I~~Pe~~k~~~k~~~~~~~~~~~~ 192 (193)
||++||++||.|+.|+++.++++++|+++|+|
T Consensus 160 v~KksGe~I~~p~~~~~~~~~~~~~~~~~~~~ 191 (191)
T 3bbo_W 160 YLIKTGEIVDTPDRWKEIQNKKESETAVAVAA 191 (191)
T ss_dssp SSCCSSSCCCCCC-------------------
T ss_pred EEecCCCCcCChhHHHHHHhcccchhhhhhcC
Confidence 99999999999999999999988888777654
No 2
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ...
Probab=100.00 E-value=3.6e-43 Score=271.88 Aligned_cols=108 Identities=36% Similarity=0.563 Sum_probs=102.8
Q ss_pred cccceeeCCEEEEeecCCCCeeeEEEEEEccCCEEEEeceeeeeeeecCCcccCCceeEEEeecCcCCCeeeeecCCCCe
Q 029417 66 HKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQIIKIEAPIHSSNVMLYSKEMEVA 145 (193)
Q Consensus 66 ~k~~IkkGD~V~VI~GkdKGK~GkV~~V~~~~n~ViVEGvN~~kkhvK~~~~~~~GgIi~~E~PIh~SNV~Lv~p~~~kp 145 (193)
.+|+|++||+|+||+|+|||++|+|++|++++++|+|||+|++++|+||++.+.+|||+++|+|||+|||+|+||++++|
T Consensus 3 ~k~~IkkGD~V~Vi~GkdKGk~GkV~~V~~~~~~ViVEGvN~~kkh~kp~~~~~~Ggi~~~E~PIh~SNV~lv~p~~~k~ 82 (110)
T 3v2d_Y 3 VKMHVKKGDTVLVASGKYKGRVGKVKEVLPKKYAVIVEGVNIVKKAVRVSPKYPQGGFIEKEAPLHASKVRPICPACGKP 82 (110)
T ss_dssp CCCSCCTTSEEEECSSTTTTCEEEEEEEEGGGTEEEETTSSEEEEECCSSSSSTTCCEEEEECCEEGGGEEEBCTTTCSB
T ss_pred cccccCCCCEEEEeEcCCCCeEeEEEEEECCCCEEEEeCEEEEEEEeCCCccCCCCCEEEEECCcCHHHeEEEcCcCCCc
Confidence 47889999999999999999999999999999999999999999999999888899999999999999999999999999
Q ss_pred eeEEEEEccCCcEEEEEcccCcccccch
Q 029417 146 SRVGHKVLDDGTRVRYLIKTGEIIDSAE 173 (193)
Q Consensus 146 tRVg~r~~edGkKvRv~kksg~~I~~Pe 173 (193)
+||+|++++||+|||||++||++||.||
T Consensus 83 tRvg~~~~edG~kvRv~kk~g~~i~~~~ 110 (110)
T 3v2d_Y 83 TRVRKKFLENGKKIRVCAKCGGALDTEE 110 (110)
T ss_dssp CCEEEEECSSCCEEEEESSSCCBCC---
T ss_pred cEEEEEECCCCcEEEEEecCCCccCCCC
Confidence 9999999999999999999999999875
No 3
>3r8s_U 50S ribosomal protein L24; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2j28_U* 3fik_U 3j19_U 2wwq_U 3oat_U* 3oas_U* 3ofd_U 3ofc_U 3ofr_U* 3ofz_U* 3og0_U 3ofq_U 3r8t_U 3i1n_U 1vs8_U 1vs6_U 1vt2_U 3i1p_U 3i1r_U 3i1t_U ...
Probab=100.00 E-value=3.9e-40 Score=251.93 Aligned_cols=100 Identities=36% Similarity=0.606 Sum_probs=96.6
Q ss_pred cceeeCCEEEEeecCCCCeeeEEEEEEccCCEEEEeceeeeeeeecCCcc-cCCceeEEEeecCcCCCeeeeecCCCCee
Q 029417 68 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREE-EEQGQIIKIEAPIHSSNVMLYSKEMEVAS 146 (193)
Q Consensus 68 ~~IkkGD~V~VI~GkdKGK~GkV~~V~~~~n~ViVEGvN~~kkhvK~~~~-~~~GgIi~~E~PIh~SNV~Lv~p~~~kpt 146 (193)
++|++||+|+||+|+|||++|+|++|+++ ++|+|||+|++++|++|++. +++|||+++|+|||+|||+|+||++++|+
T Consensus 2 ~~IkkGD~V~Vi~GkdKGk~GkV~~V~~~-~~ViVeGvN~~kkh~kp~~~~~~~Ggi~~~E~PIh~SNV~lv~p~~~k~t 80 (102)
T 3r8s_U 2 AKIRRDDEVIVLTGKDKGKRGKVKNVLSS-GKVIVEGINLVKKHQKPVPALNQPGGIVEKEAAIQVSNVAIFNAATGKAD 80 (102)
T ss_dssp CSSCSSCEEEECSSSSTTCEEEEEEEETT-TEEEETTCSEEEEEECCCSSSSCSCEEEEEECCEEGGGEEEEETTTTEEE
T ss_pred CCccCCCEEEEeEcCCCCeeeEEEEEEeC-CEEEEeCeEEEEeccccCcccCCCCCEEEEECCcCHHHEEEEcCcCCCce
Confidence 47999999999999999999999999999 99999999999999999876 78999999999999999999999999999
Q ss_pred eEEEEEccCCcEEEEEcccCccc
Q 029417 147 RVGHKVLDDGTRVRYLIKTGEII 169 (193)
Q Consensus 147 RVg~r~~edGkKvRv~kksg~~I 169 (193)
||+|+ ++||+|||||++||++|
T Consensus 81 rvg~~-~edG~kvRv~k~~g~~i 102 (102)
T 3r8s_U 81 RVGFR-FEDGKKVRFFKSNSETI 102 (102)
T ss_dssp CEEEE-EETTEEEEEETTTTEEC
T ss_pred EEEEE-eCCCeEEEEEeecCcCC
Confidence 99999 69999999999999986
No 4
>2ftc_N Mitochondrial ribosomal protein L24; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_N
Probab=100.00 E-value=5.1e-39 Score=243.39 Aligned_cols=96 Identities=30% Similarity=0.499 Sum_probs=93.8
Q ss_pred CCEEEEeecCCCCeeeEEEEEEccCCEEEEeceeeeeeeecCCcccCCceeEEEeecCcCCCeeeeecCCCCeeeEEEEE
Q 029417 73 GDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQIIKIEAPIHSSNVMLYSKEMEVASRVGHKV 152 (193)
Q Consensus 73 GD~V~VI~GkdKGK~GkV~~V~~~~n~ViVEGvN~~kkhvK~~~~~~~GgIi~~E~PIh~SNV~Lv~p~~~kptRVg~r~ 152 (193)
||+|+||+|+||||+|+|++|++++++|+|||+|++++|+||++ +.+|+|+++|+|||+|||||+||.+++|+||+|++
T Consensus 1 GD~V~Vi~GkdKGk~GkV~~V~~~~~~ViVeGvN~~kkh~kp~~-~~~Ggiv~~e~pIh~SNV~lv~p~~~k~tRvg~~~ 79 (96)
T 2ftc_N 1 GDTVEILEGKDAGKQGKVVQVIRQRNWVVVGGLNTHYRYIGKTM-DYRGTMIPSEAPLLHRQVKLVDPMDRKPTEIEWRF 79 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEECCCCEEEEeCCEEEEEEcCCCC-CCCCCEEEEecCcCHHHEEEEeCcCCCceEEEEEE
Confidence 89999999999999999999999999999999999999999997 77899999999999999999999999999999999
Q ss_pred ccCCcEEEEEcccCccc
Q 029417 153 LDDGTRVRYLIKTGEII 169 (193)
Q Consensus 153 ~edGkKvRv~kksg~~I 169 (193)
++||+|+|||++||++|
T Consensus 80 ~~dg~kvR~~kk~g~~i 96 (96)
T 2ftc_N 80 TEAGERVRVSTRSGRII 96 (96)
T ss_pred ccCCcEEEEEeccCCCC
Confidence 99999999999999986
No 5
>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V
Probab=100.00 E-value=1.8e-40 Score=258.45 Aligned_cols=102 Identities=35% Similarity=0.543 Sum_probs=97.5
Q ss_pred cceeeCCEEEEeecCCCCeeeEEEEEEccCCEEEEeceeeeeeeecCCcccCCceeEEEeecCcCCCeeeeecCCCCeee
Q 029417 68 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQIIKIEAPIHSSNVMLYSKEMEVASR 147 (193)
Q Consensus 68 ~~IkkGD~V~VI~GkdKGK~GkV~~V~~~~n~ViVEGvN~~kkhvK~~~~~~~GgIi~~E~PIh~SNV~Lv~p~~~kptR 147 (193)
|+|++||+|+||+|+|||++|+|++|++++++|+|||+|++++|+||++.+++|||+++|+|||+|||+|+||++++|+|
T Consensus 14 m~IkkGD~V~Vi~GkdKGk~GkV~~V~~~~~~V~VEGvN~~kkh~kp~~~~~~Ggiv~~e~PIh~SNV~lv~p~~~k~tR 93 (115)
T 2zjr_R 14 LHFKKGDTVIVLSGKHKGQTGKVLLALPRDQKVVVEGVNVITKNVKPSMTNPQGGQEQRELALHASKVALVDPETGKATR 93 (115)
T ss_dssp CSSCTTSEEECCSSSSTTCEEEEEEEETTTTEEEESSSCBCCCCCCTTSSSCCCCCCCBCCCBCSSSEECBSSSSBCCCC
T ss_pred CcccCCCEEEEeEcCCCCcEEEEEEEECCCCEEEEeCcEeEEEecCCCcCCCCCCEEEEEcccCHHHEEEEeccCCCceE
Confidence 45999999999999999999999999999999999999999999999988889999999999999999999999999999
Q ss_pred EEEEEccCCcEEEEEcccCcccc
Q 029417 148 VGHKVLDDGTRVRYLIKTGEIID 170 (193)
Q Consensus 148 Vg~r~~edGkKvRv~kksg~~I~ 170 (193)
|+|++ +||+|||||++||++|+
T Consensus 94 vg~~~-~dG~kvR~~kk~g~~i~ 115 (115)
T 2zjr_R 94 VRKQI-VDGKKVRVAVASGKTID 115 (115)
T ss_dssp CCCCC-SCTTSCCCCSSSCCC--
T ss_pred EEEEE-cCCCEEEEEeecCCCcC
Confidence 99999 89999999999999984
No 6
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...
Probab=99.97 E-value=6.9e-33 Score=217.20 Aligned_cols=102 Identities=27% Similarity=0.352 Sum_probs=92.2
Q ss_pred ccccccccCCCCCCCcccCCCCcceEEecCCCHHHHHhhCCCCCCcccccceeeCCEEEEeecCCCCeeeEEEEEEccCC
Q 029417 19 NSFFGQRLSFPSLSPITVKPTDKPCLIVVRLKRWERKECKPNSLPVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNS 98 (193)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~k~lR~k~~~rs~p~~~k~~IkkGD~V~VI~GkdKGK~GkV~~V~~~~n 98 (193)
.+.|.|+++. ++.+|+++||+|||++|+.|+++ |++||+|+||+|+|||++|+|++|+++++
T Consensus 10 k~~~~Ap~h~------------rrk~msa~LskeLr~ky~vr~~~------IkkGD~V~Vi~G~dKGk~GkV~~V~~k~~ 71 (120)
T 1vq8_T 10 KSQRRAPLHE------------RHKQVRATLSADLREEYGQRNVR------VNAGDTVEVLRGDFAGEEGEVINVDLDKA 71 (120)
T ss_dssp HHHHTCCGGG------------SGGGGEEEECHHHHHHHTCSEEE------CCTTCEEEECSSTTTTCEEEEEEEETTTT
T ss_pred HHhhcCCcch------------hhheeeCcCCHHHHHhhcccccc------ccCCCEEEEEecCCCCCEEEEEEEECCCC
Confidence 4456666655 45899999999999999998877 99999999999999999999999999999
Q ss_pred EEEEeceeeeeeeecCCcccCCceeEEEeecCcCCCeeeeecCCCCeeeEE
Q 029417 99 TVMVKDINLKTKHVKKREEEEQGQIIKIEAPIHSSNVMLYSKEMEVASRVG 149 (193)
Q Consensus 99 ~ViVEGvN~~kkhvK~~~~~~~GgIi~~E~PIh~SNV~Lv~p~~~kptRVg 149 (193)
+|+|||+|+ +| ++|| ++|+|||+|||+|+||.+++++|++
T Consensus 72 ~V~VEgvn~-kK--------~~Gg--~~e~pIh~SNV~i~~~~~~k~~Rv~ 111 (120)
T 1vq8_T 72 VIHVEDVTL-EK--------TDGE--EVPRPLDTSNVRVTDLDLEDEKREA 111 (120)
T ss_dssp EEEETTCEE-EC--------SSSC--EEECCBCGGGEEEEECCCCCHHHHH
T ss_pred EEEEeCeEe-Ec--------CCCC--EEEeeechHHEEEEeccCCCchhhe
Confidence 999999999 64 3566 9999999999999999999999987
No 7
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.97 E-value=2.2e-32 Score=214.66 Aligned_cols=103 Identities=28% Similarity=0.442 Sum_probs=93.0
Q ss_pred ccccccccCCCCCCCcccCCCCcceEEecCCCHHHHHhhCCCCCCcccccceeeCCEEEEeecCCCCeeeEEEEEEccCC
Q 029417 19 NSFFGQRLSFPSLSPITVKPTDKPCLIVVRLKRWERKECKPNSLPVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNS 98 (193)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~k~lR~k~~~rs~p~~~k~~IkkGD~V~VI~GkdKGK~GkV~~V~~~~n 98 (193)
.+.|.|+++. ++.+|+++||+|||++|+.++++ |++||+|+||+|+|||++|+|++|+++++
T Consensus 13 k~~f~Ap~h~------------r~k~msa~LSkeLR~ky~~r~~~------IkkGD~V~Vi~GkdKGk~GkV~~V~~k~~ 74 (121)
T 3j21_U 13 KFLYNAPLHV------------RQKLMSAPLSRELREKYKVRNLP------VRVGDKVRIMRGDYKGHEGKVVEVDLKRY 74 (121)
T ss_dssp HHHHHCCTTG------------GGGGSEEEBCHHHHHHTCCSEEE------CCSSSEEEECSSSCSSEEEEEEEEETTTT
T ss_pred HHhhcCCcch------------hhhhhcCcCCHHHHHHhCCcccc------cccCCEEEEeecCCCCcEeEEEEEEecCC
Confidence 5667776665 55999999999999999999888 99999999999999999999999999999
Q ss_pred EEEEeceeeeeeeecCCcccCCceeEEEeecCcCCCeeeeecCCCCeeeEEE
Q 029417 99 TVMVKDINLKTKHVKKREEEEQGQIIKIEAPIHSSNVMLYSKEMEVASRVGH 150 (193)
Q Consensus 99 ~ViVEGvN~~kkhvK~~~~~~~GgIi~~E~PIh~SNV~Lv~p~~~kptRVg~ 150 (193)
+|+|||||++++| |. ++|+|||+|||+|+||.+++++|+++
T Consensus 75 ~V~VEgvn~~k~~---------G~--~~e~pIh~SNV~l~~~~~~d~~R~~~ 115 (121)
T 3j21_U 75 RIYVEGATLRKTN---------GT--EVFYPIHPSNVMIIELNLEDEKRKKI 115 (121)
T ss_dssp EEEETTCEEECSS---------SC--EEECCBCGGGEEEEECCCCCHHHHHH
T ss_pred EEEEeCeEEEecC---------Cc--EEEcccCHHHeEEEcCccCCcHHHHH
Confidence 9999999999842 32 89999999999999999999998764
No 8
>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L 2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 4b6a_Y 1s1i_U 3izc_Y 3izs_Y 3jyw_U
Probab=99.96 E-value=3.1e-31 Score=209.59 Aligned_cols=97 Identities=23% Similarity=0.420 Sum_probs=87.2
Q ss_pred ccccccccCCCCCCCcccCCCCcceEEecCCCHHHHHhhCCCCCCcccccceeeCCEEEEeecCCCCeeeEEEEEEccCC
Q 029417 19 NSFFGQRLSFPSLSPITVKPTDKPCLIVVRLKRWERKECKPNSLPVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNS 98 (193)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~k~lR~k~~~rs~p~~~k~~IkkGD~V~VI~GkdKGK~GkV~~V~~~~n 98 (193)
.+.|.|+++. ++.+|+++||+|||++|+.|++| |++||+|+||+|+|||++|+|++|+++++
T Consensus 17 K~~f~Ap~h~------------r~k~msa~LSkeLr~ky~vrs~~------IkkgD~V~Vi~GkdKGk~GkV~~V~~kk~ 78 (127)
T 3u5e_Y 17 KAYFTAPSSQ------------RRVLLSAPLSKELRAQYGIKALP------IRRDDEVLVVRGSKKGQEGKISSVYRLKF 78 (127)
T ss_dssp HHHHTCCHHH------------HHHHTEEEBCHHHHHHHTCCEEE------CCTTCEEEECSSTTTTCEEEEEEEEGGGT
T ss_pred HHhhcCCcch------------hhhheeCcCCHHHHHHhCcCccc------ccCCCEEEEeecCCCCccceEEEEECCCC
Confidence 4566666665 45999999999999999999999 99999999999999999999999999999
Q ss_pred EEEEeceeeeeeeecCCcccCCceeEEEeecCcCCCeeeeecCCCC
Q 029417 99 TVMVKDINLKTKHVKKREEEEQGQIIKIEAPIHSSNVMLYSKEMEV 144 (193)
Q Consensus 99 ~ViVEGvN~~kkhvK~~~~~~~GgIi~~E~PIh~SNV~Lv~p~~~k 144 (193)
+|+|||||+++. .|+ ++|+|||+|||+|+|+++++
T Consensus 79 ~V~VEgVn~~K~---------~G~--~~e~pIh~SNV~i~~~~~dk 113 (127)
T 3u5e_Y 79 AVQVDKVTKEKV---------NGA--SVPINLHPSKLVITKLHLDK 113 (127)
T ss_dssp EEEEETCEEECS---------SSC--EEECCBCGGGEEEEECCCCH
T ss_pred EEEEeCeEEECC---------CCc--EEEcccchHHEEEEccccCc
Confidence 999999999872 243 88999999999999999864
No 9
>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_S 4a1c_S 4a1e_S
Probab=99.96 E-value=4.9e-31 Score=210.20 Aligned_cols=97 Identities=23% Similarity=0.422 Sum_probs=87.3
Q ss_pred ccccccccCCCCCCCcccCCCCcceEEecCCCHHHHHhhCCCCCCcccccceeeCCEEEEeecCCCCeeeEEEEEEccCC
Q 029417 19 NSFFGQRLSFPSLSPITVKPTDKPCLIVVRLKRWERKECKPNSLPVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNS 98 (193)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~k~lR~k~~~rs~p~~~k~~IkkGD~V~VI~GkdKGK~GkV~~V~~~~n 98 (193)
.+.|.|+++. ++.+|+++||+|||++|+.|++| |++||+|+||+|+|||++|+|++|+++++
T Consensus 16 K~~f~Ap~h~------------rrk~msa~LSkeLr~ky~vRs~~------IkkgD~V~Vi~GkdKGk~GkV~~V~~kk~ 77 (135)
T 4a17_S 16 KAHFASPSHL------------RQTLMSAHLSKDLRSKYNVRSMP------VRKDDEVLIVRGKFKGNKGKVTQVYRKKW 77 (135)
T ss_dssp HHHHTCCHHH------------HHHHSEEEECHHHHHHHTCSEEE------CCTTCEEEECSSTTTTCEEEEEEEETTTT
T ss_pred HHhhcCCcch------------hhheeeCcCCHHHHHHhCCCccc------ccCCCEEEEeecCCCCceeeEEEEEcCCC
Confidence 4566666655 55999999999999999999999 99999999999999999999999999999
Q ss_pred EEEEeceeeeeeeecCCcccCCceeEEEeecCcCCCeeeeecCCCC
Q 029417 99 TVMVKDINLKTKHVKKREEEEQGQIIKIEAPIHSSNVMLYSKEMEV 144 (193)
Q Consensus 99 ~ViVEGvN~~kkhvK~~~~~~~GgIi~~E~PIh~SNV~Lv~p~~~k 144 (193)
+|+|||||+++. .|+ ++|+|||+|||+|+||++++
T Consensus 78 ~V~VEgVn~~K~---------~G~--~~e~pIh~SNV~i~~~k~dk 112 (135)
T 4a17_S 78 AIHVEKISKNKL---------NGA--PYQIPLSASQLVLTKLKLDK 112 (135)
T ss_dssp EEEETTCCEEET---------TTE--EECCCBCGGGEEEEECCCCH
T ss_pred EEEEeCeEEEcC---------CCC--EEEcccchHHEEEEcccCCc
Confidence 999999999871 344 89999999999999999864
No 10
>3iz5_Y 60S ribosomal protein L26 (L24P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Y
Probab=99.96 E-value=3e-30 Score=208.73 Aligned_cols=97 Identities=24% Similarity=0.434 Sum_probs=87.2
Q ss_pred ccccccccCCCCCCCcccCCCCcceEEecCCCHHHHHhhCCCCCCcccccceeeCCEEEEeecCCCCeeeEEEEEEccCC
Q 029417 19 NSFFGQRLSFPSLSPITVKPTDKPCLIVVRLKRWERKECKPNSLPVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNS 98 (193)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~k~lR~k~~~rs~p~~~k~~IkkGD~V~VI~GkdKGK~GkV~~V~~~~n 98 (193)
.+.|.++++. ++.+|+++||+|||++|+.|++| |++||+|+||+|+|||++|+|++|+++++
T Consensus 16 K~~f~Ap~h~------------Rrk~msa~LSkELR~ky~vRs~~------IkKGD~V~Vi~GkdKGk~GkVl~V~~kk~ 77 (150)
T 3iz5_Y 16 KAHFTAPSSV------------RRVLMSAALSTELRHKYNVRSIP------IRKDDEVQVVRGSYKGREGKVVQVYRRRW 77 (150)
T ss_dssp HHHHHCCHHH------------HHHTTEEEECHHHHTTTTCSEEE------CCSSSEEEECSSTTTTCEEEEEEEETTTT
T ss_pred HHhhcCCcch------------hhhheeCcCCHHHHHHhCCcccc------cCCCCEEEEeecCCCCccceEEEEEcCCC
Confidence 4566666655 55999999999999999999999 99999999999999999999999999999
Q ss_pred EEEEeceeeeeeeecCCcccCCceeEEEeecCcCCCeeeeecCCCC
Q 029417 99 TVMVKDINLKTKHVKKREEEEQGQIIKIEAPIHSSNVMLYSKEMEV 144 (193)
Q Consensus 99 ~ViVEGvN~~kkhvK~~~~~~~GgIi~~E~PIh~SNV~Lv~p~~~k 144 (193)
+|+|||||++++| |. ++|+|||+|||+|+||++++
T Consensus 78 ~V~VEGVN~~K~~---------G~--~~eapIh~SNV~i~~~k~dk 112 (150)
T 3iz5_Y 78 VIHVERITREKVN---------GS--TVNVGIHPSKVVVTKLKLDK 112 (150)
T ss_dssp EEEETTCEEECTT---------SC--EEECCBCGGGEEEEECCCCS
T ss_pred EEEEeCcEEEeCC---------CC--EEecccchHHEEEEcccCCh
Confidence 9999999999832 33 78999999999999999865
No 11
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=99.96 E-value=4.2e-30 Score=207.07 Aligned_cols=111 Identities=21% Similarity=0.437 Sum_probs=88.5
Q ss_pred ccccccccCCCCCCCcccCCCCcceEEecCCCHHHHHhhCCCCCCcccccceeeCCEEEEeecCCCCee-eEEEEEEccC
Q 029417 19 NSFFGQRLSFPSLSPITVKPTDKPCLIVVRLKRWERKECKPNSLPVLHKMHVKAGDTVKVIAGCDKGKI-GEITKVFRHN 97 (193)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~k~lR~k~~~rs~p~~~k~~IkkGD~V~VI~GkdKGK~-GkV~~V~~~~ 97 (193)
.+.|.|++|. |+.+|+++||+|||++|+.|+++ |++||+|+||+|+|||++ |+|++|++++
T Consensus 16 k~~~~Ap~h~------------Rrk~msa~LSkelr~ky~vr~~~------IkkGD~V~Vi~GkdKGk~~GkV~~V~~k~ 77 (145)
T 2zkr_t 16 KRHFNAPSHI------------RRKIMSSPLSKELRQKYNVRSMP------IRKDDEVQVVRGHYKGQQIGKVVQVYRKK 77 (145)
T ss_dssp HHHHTCCHHH------------HGGGGBC-CCHHHHHC-CC-CCB------CCTTCEEEECSSTTTTCCSEEEEEEETTT
T ss_pred HHHhcCcHHH------------HHHHHhcccChhHHhhcCccccc------cCCCCEEEEeecCCCCcceeEEEEEECCC
Confidence 4566777765 45899999999999999999887 999999999999999999 9999999999
Q ss_pred CEEEEeceeeeeeeecCCcccCCceeEEEeecCcCCCeeeeecCCCCeeeEEEEEccCCcEEEE
Q 029417 98 STVMVKDINLKTKHVKKREEEEQGQIIKIEAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRY 161 (193)
Q Consensus 98 n~ViVEGvN~~kkhvK~~~~~~~GgIi~~E~PIh~SNV~Lv~p~~~kptRVg~r~~edGkKvRv 161 (193)
++|+|||||+. ||+ | +++|+|||+|||+|+||.++++++ ..++...+.|.
T Consensus 78 ~~V~VEgvn~~----Kp~-----G--~~~e~PIh~SNV~lv~~~~~k~~k---~~le~k~~~r~ 127 (145)
T 2zkr_t 78 YVIYIERVQRE----KAN-----G--TTVHVGIHPSKVVITRLKLDKDRK---KILERKAKSRQ 127 (145)
T ss_dssp TEEEETTCEEE----CSS-----C--CEEECCBCGGGEEECC-CCCHHHH---HHHHC------
T ss_pred CEEEEeeeEeE----cCC-----C--ceEEeccCHHHEEEEcCcCCchHH---HHhhcccccch
Confidence 99999999993 332 3 699999999999999999999986 33565555554
No 12
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=98.22 E-value=1.8e-06 Score=58.31 Aligned_cols=35 Identities=26% Similarity=0.376 Sum_probs=32.8
Q ss_pred ceeeCCEEEEeecCCCCeeeEEEEEEccCCEEEEe
Q 029417 69 HVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVK 103 (193)
Q Consensus 69 ~IkkGD~V~VI~GkdKGK~GkV~~V~~~~n~ViVE 103 (193)
.+.+||+|.|++|+++|..|+|.+++++++++.|.
T Consensus 4 ~~~~Gd~V~V~~Gpf~g~~g~v~~v~~~k~~v~V~ 38 (58)
T 1nz9_A 4 AFREGDQVRVVSGPFADFTGTVTEINPERGKVKVM 38 (58)
T ss_dssp SCCTTCEEEECSGGGTTCEEEEEEEETTTTEEEEE
T ss_pred ccCCCCEEEEeecCCCCcEEEEEEEcCCCCEEEEE
Confidence 37899999999999999999999999999899887
No 13
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=97.49 E-value=9.4e-05 Score=58.17 Aligned_cols=76 Identities=28% Similarity=0.273 Sum_probs=54.6
Q ss_pred CCCHHHHHhhCCCCCCcccccceeeCCEEEEeecCCCCeeeEEEEEEccCCEEEEeceeeeeeeecCCcccCCceeEEEe
Q 029417 48 RLKRWERKECKPNSLPVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQIIKIE 127 (193)
Q Consensus 48 ~l~k~lR~k~~~rs~p~~~k~~IkkGD~V~VI~GkdKGK~GkV~~V~~~~n~ViVEGvN~~kkhvK~~~~~~~GgIi~~E 127 (193)
+|+.++-..+.... + ....+..||.|.|+.|+++|-.|.|.+|+.+++++.|+=.- . |. +.+
T Consensus 73 ~v~~~Ei~~il~~~-~--~~~~~~~Gd~VrI~~Gpf~g~~g~V~~vd~~k~~v~V~v~~----------~---gr--~tp 134 (152)
T 3p8b_B 73 EVPFKEIEHFLEEK-P--AVSGLEPGDLVEVIAGPFKGQKAKVVKIDESKDEVVVQFID----------A---IV--PIP 134 (152)
T ss_dssp CBCGGGTGGGCCCS-C--TTTTCCTTCEEEECSSTTTTCEEEEEEEETTTTEEEEEESS----------C---SS--CCE
T ss_pred CCCHHHHHHHhCcC-C--ccccCCCCCEEEEeeecCCCCEEEEEEEeCCCCEEEEEEEe----------c---ce--eEE
Confidence 55555555443211 1 22348899999999999999999999999999999887221 1 21 445
Q ss_pred ecCcCCCeeeeecC
Q 029417 128 APIHSSNVMLYSKE 141 (193)
Q Consensus 128 ~PIh~SNV~Lv~p~ 141 (193)
..|+.++|..++.+
T Consensus 135 vel~~~~v~~i~~~ 148 (152)
T 3p8b_B 135 VTIKGDYVRLISKL 148 (152)
T ss_dssp EEEEGGGEEEEECC
T ss_pred EEECHHHEEEeccc
Confidence 67888999998754
No 14
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.05 E-value=0.0002 Score=48.83 Aligned_cols=33 Identities=24% Similarity=0.275 Sum_probs=28.4
Q ss_pred ceeeCCEEEEeecCCCCeeeEEEEEEccCCEEEEe
Q 029417 69 HVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVK 103 (193)
Q Consensus 69 ~IkkGD~V~VI~GkdKGK~GkV~~V~~~~n~ViVE 103 (193)
.+.+||.|.|+.|+++|-.|+|.+|+.+ +|.|.
T Consensus 7 ~f~~GD~V~V~~Gpf~g~~G~V~evd~e--~v~V~ 39 (59)
T 2e6z_A 7 GFQPGDNVEVCEGELINLQGKILSVDGN--KITIM 39 (59)
T ss_dssp SCCTTSEEEECSSTTTTCEEEECCCBTT--EEEEE
T ss_pred cCCCCCEEEEeecCCCCCEEEEEEEeCC--EEEEE
Confidence 3789999999999999999999999975 55443
No 15
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=96.80 E-value=0.0013 Score=46.78 Aligned_cols=38 Identities=37% Similarity=0.537 Sum_probs=30.3
Q ss_pred ceeeCCEEEEeecCCCCeeeEEEEEEccCCEEEEeceee
Q 029417 69 HVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINL 107 (193)
Q Consensus 69 ~IkkGD~V~VI~GkdKGK~GkV~~V~~~~n~ViVEGvN~ 107 (193)
+++.||-|.||+|++.|..|-|.+|... --+++-+.++
T Consensus 17 ~F~~GDHVkVi~G~~~getGlVV~v~~d-~v~v~SD~t~ 54 (69)
T 2do3_A 17 YFKMGDHVKVIAGRFEGDTGLIVRVEEN-FVILFSDLTM 54 (69)
T ss_dssp SCCTTCEEEESSSTTTTCEEEEEEECSS-CEEEEESSSC
T ss_pred eccCCCeEEEeccEEcCceEEEEEEeCC-EEEEEeCCCC
Confidence 4789999999999999999999999843 2344555554
No 16
>2jvv_A Transcription antitermination protein NUSG; transcription factor, transcription regulation, transcription termination; NMR {Escherichia coli} PDB: 2k06_A 2kvq_G
Probab=96.70 E-value=0.0016 Score=52.35 Aligned_cols=35 Identities=23% Similarity=0.197 Sum_probs=32.1
Q ss_pred ceeeCCEEEEeecCCCCeeeEEEEEEccCCEEEEe
Q 029417 69 HVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVK 103 (193)
Q Consensus 69 ~IkkGD~V~VI~GkdKGK~GkV~~V~~~~n~ViVE 103 (193)
.+..||+|.|+.|+++|-.|.|.+|+.+++++.|.
T Consensus 127 ~~~~Gd~V~V~~GPf~g~~G~v~~v~~~k~r~~V~ 161 (181)
T 2jvv_A 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVS 161 (181)
T ss_dssp CCCTTEEEEECSSTTTTEEEEEEEEETTTTEEEEE
T ss_pred cCCCCCEEEEeccCCCCcEEEEEEEeCCCCEEEEE
Confidence 47899999999999999999999999988888765
No 17
>2ckk_A KIN17; beta barrel, ribosomal protein, ribonucleoprotein, nuclear protein; 1.45A {Homo sapiens}
Probab=96.64 E-value=0.002 Score=50.14 Aligned_cols=33 Identities=15% Similarity=0.338 Sum_probs=31.1
Q ss_pred eeCCEEEEeecCCCCeeeEEEEEEccCCEEEEe
Q 029417 71 KAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVK 103 (193)
Q Consensus 71 kkGD~V~VI~GkdKGK~GkV~~V~~~~n~ViVE 103 (193)
++||+|.|+.|+++|..|++++++.++..++|+
T Consensus 72 ~~g~~V~Iv~G~~rG~~g~L~~id~~~~~~~V~ 104 (127)
T 2ckk_A 72 APGKRILVLNGGYRGNEGTLESINEKTFSATIV 104 (127)
T ss_dssp CTTCEEEECSSTTTTCEEEEEEEEGGGTEEEEE
T ss_pred CCCCEEEEEecccCCcEEEEEEEeCCCcEEEEE
Confidence 799999999999999999999999998888877
No 18
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=95.25 E-value=0.017 Score=51.74 Aligned_cols=36 Identities=28% Similarity=0.368 Sum_probs=32.8
Q ss_pred cceeeCCEEEEeecCCCCeeeEEEEEEccCCEEEEe
Q 029417 68 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVK 103 (193)
Q Consensus 68 ~~IkkGD~V~VI~GkdKGK~GkV~~V~~~~n~ViVE 103 (193)
..+..||+|.|+.|+++|..|.|.+++.+++++.|.
T Consensus 297 ~~f~~Gd~VrV~~GPF~G~~G~V~evd~ek~rv~V~ 332 (352)
T 2xhc_A 297 LGFKVGDMVKIISGPFEDFAGVIKEIDPERQELKVN 332 (352)
T ss_dssp CCCCTTCEEEECSSTTTTCEEEEEEEETTTTEEEEE
T ss_pred ccCCCCCEEEEeccCCCCcEEEEEEEcCCCCEEEEE
Confidence 347899999999999999999999999999888875
No 19
>1m1h_A Transcription antitermination protein NUSG; transcription termination, RNP motif, immunoglobulin fold, nucleic acid interaction; 1.95A {Aquifex aeolicus} SCOP: b.114.1.1 d.58.42.1 PDB: 1m1g_A 1npp_A 1npr_A
Probab=94.73 E-value=0.0053 Score=52.60 Aligned_cols=37 Identities=27% Similarity=0.383 Sum_probs=0.0
Q ss_pred ccceeeCCEEEEeecCCCCeeeEEEEEEccCCEEEEe
Q 029417 67 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVK 103 (193)
Q Consensus 67 k~~IkkGD~V~VI~GkdKGK~GkV~~V~~~~n~ViVE 103 (193)
...+..||.|.|+.|+++|-.|.|.+|+.+++++.|.
T Consensus 192 ~~~~~~Gd~V~I~~Gpf~g~~G~v~ev~~~k~~~~V~ 228 (248)
T 1m1h_A 192 KVEFEKGDQVRVIEGPFMNFTGTVEEVHPEKRKLTVM 228 (248)
T ss_dssp -------------------------------------
T ss_pred cccCCCCCEEEEeccCCCCcEEEEEEEeCCCCEEEEE
Confidence 3447899999999999999999999999998887765
No 20
>3iz5_N 60S ribosomal protein L14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_N
Probab=89.88 E-value=0.21 Score=39.43 Aligned_cols=36 Identities=25% Similarity=0.330 Sum_probs=32.5
Q ss_pred eeeCCEEEEeecCCCCeeeEEEEEEccCCEEEEecee
Q 029417 70 VKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDIN 106 (193)
Q Consensus 70 IkkGD~V~VI~GkdKGK~GkV~~V~~~~n~ViVEGvN 106 (193)
+..|-.|.|..|+|.|+...|..|.-+ |+|+|+|..
T Consensus 7 vevGRVV~i~~Gr~aGk~avIV~iiD~-~rvLVdG~~ 42 (134)
T 3iz5_N 7 VEIGRVALVNYGKDYGRLVVIVDVVDQ-NRALVDAPD 42 (134)
T ss_dssp CCSSEEEECSCCSSSCCEEEEEEECSS-SEEEEEETT
T ss_pred cccCeEEEEeeCCCCCCEEEEEEEcCC-CeEEEeCCC
Confidence 678999999999999999999999875 699999976
No 21
>2joy_A 50S ribosomal protein L14E; protein solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: b.34.5.7 PDB: 2kds_A
Probab=89.84 E-value=0.18 Score=37.29 Aligned_cols=36 Identities=17% Similarity=0.316 Sum_probs=31.4
Q ss_pred eeeCCEEEEeecCCCCeeeEEEEEEccCCEEEEecee
Q 029417 70 VKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDIN 106 (193)
Q Consensus 70 IkkGD~V~VI~GkdKGK~GkV~~V~~~~n~ViVEGvN 106 (193)
+..|--|.+++|+|+|+.-.|+++.. .+.|+|.|-.
T Consensus 4 v~~GrVv~~~~Gr~~Gk~~VIv~~iD-~~~vLV~gp~ 39 (96)
T 2joy_A 4 IEVGRICVKVKGREAGSKCVIVDIID-DNFVLVTGPK 39 (96)
T ss_dssp SSTTEEEECSSSSTTCCEEEEEEECS-SSCEEEECCT
T ss_pred cccCEEEEEeecCCCCCEEEEEEEeC-CCEEEEECCc
Confidence 67899999999999999999999974 5699998863
No 22
>4a18_N RPL27, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_N 4a1b_N 4a1d_N
Probab=89.31 E-value=0.5 Score=37.73 Aligned_cols=40 Identities=25% Similarity=0.306 Sum_probs=35.1
Q ss_pred eeeCCEEEEeecCCCCeeeEEEEEEccC------CEEEEeceeeee
Q 029417 70 VKAGDTVKVIAGCDKGKIGEITKVFRHN------STVMVKDINLKT 109 (193)
Q Consensus 70 IkkGD~V~VI~GkdKGK~GkV~~V~~~~------n~ViVEGvN~~k 109 (193)
+++|=-|.|++|++.|+...|++++.+. +.++|.|+...-
T Consensus 5 ~kpGrVvivl~Gr~aGkkaVIvk~iD~gt~d~~y~~aLVaGIdryP 50 (144)
T 4a18_N 5 LKYGRVVILLQGRFAGKKAVIVKSSEDGTKDRKFGHVLVAGVERSP 50 (144)
T ss_dssp CCTTEEEEECSSTTTTCEEEEEEEESSCCSSCCSCEEEEEEEEECC
T ss_pred ccCCeEEEEecCCcCCCEEEEEEecCCCccCCccceEEEEecccCC
Confidence 6789899999999999999999998764 799999987654
No 23
>4a18_F RPL14; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_F 4a1b_F 4a1d_F 4adx_7
Probab=89.24 E-value=0.54 Score=36.72 Aligned_cols=52 Identities=23% Similarity=0.366 Sum_probs=40.9
Q ss_pred eeeCCEEEEeecCCCCeeeEEEEEEccCCEEEEeceeeeeeeecCCcccCCceeEEEeecCcCCCeeeeec
Q 029417 70 VKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQIIKIEAPIHSSNVMLYSK 140 (193)
Q Consensus 70 IkkGD~V~VI~GkdKGK~GkV~~V~~~~n~ViVEGvN~~kkhvK~~~~~~~GgIi~~E~PIh~SNV~Lv~p 140 (193)
+..|=-|.|..|+|.|+...|..|.-. |+|+|+|-. +.+ ..|++.++.|++.
T Consensus 7 vevGRVv~i~~G~~aGklavIVdIID~-nrvLVdGp~-V~R-----------------q~~n~k~l~LT~~ 58 (126)
T 4a18_F 7 VQVGRVVYINYGADKGKLAVIVNIINQ-NRILIDGEH-IVR-----------------QVIPIRRVHLTKF 58 (126)
T ss_dssp EETTEEEEECSSTTTTEEEEEEEEETT-TEEEEEETT-EEE-----------------EEEEGGGEEEEEE
T ss_pred eecceEEEEccCCccCCEEEEEEEecC-CeEEEeCCC-ccc-----------------ceeeccceEEcce
Confidence 678888888899999999999999876 699999875 232 1455667777764
No 24
>3izc_N 60S ribosomal protein RPL14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_N 3o58_N 3o5h_N 3u5e_M 3u5i_M 4b6a_M
Probab=88.19 E-value=0.3 Score=38.71 Aligned_cols=35 Identities=23% Similarity=0.458 Sum_probs=31.8
Q ss_pred eeeCCEEEEeecCCCCeeeEEEEEEccCCEEEEece
Q 029417 70 VKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDI 105 (193)
Q Consensus 70 IkkGD~V~VI~GkdKGK~GkV~~V~~~~n~ViVEGv 105 (193)
+..|-.|.|..|+|.|+...|+.|.-+ |+|+|+|-
T Consensus 15 ve~GrVV~i~~Gr~aGk~avIV~iiD~-~rVLVDGp 49 (138)
T 3izc_N 15 VEVGRVVLIKKGQSAGKLAAIVEIIDQ-KKVLIDGP 49 (138)
T ss_dssp SSTTEEEECCSCSSSCCEEEEEEECSS-SEEEEECS
T ss_pred cccCeEEEEeeCCCCCCEEEEEEEecC-CEEEEEcC
Confidence 678999999999999999999999875 79999986
No 25
>3j21_5 50S ribosomal protein L14E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=87.02 E-value=0.33 Score=35.11 Aligned_cols=36 Identities=22% Similarity=0.355 Sum_probs=31.5
Q ss_pred eeeCCEEEEeecCCCCeeeEEEEEEccCCEEEEecee
Q 029417 70 VKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDIN 106 (193)
Q Consensus 70 IkkGD~V~VI~GkdKGK~GkV~~V~~~~n~ViVEGvN 106 (193)
+..|--|.+.+|+|+|+...|+++.-+ ++|+|.|-.
T Consensus 4 ~~~Grvv~~~~Gr~~Gk~~vIv~iiD~-~~vlV~g~~ 39 (83)
T 3j21_5 4 IDVGRIAVVIAGRRAGQKVVVVDIIDK-NFVLVTGAG 39 (83)
T ss_dssp CCTTEEEECSSSSSSCCCEEEEEECSS-SCEEEECCT
T ss_pred cccCEEEEEeecCCCCCEEEEEEEcCC-CEEEEECCc
Confidence 678999999999999999999998765 699999863
No 26
>2e70_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.14 E-value=0.75 Score=32.61 Aligned_cols=31 Identities=32% Similarity=0.417 Sum_probs=25.5
Q ss_pred eeCCEEEEeecCCCCeeeEEEEEEccCCEEEEe
Q 029417 71 KAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVK 103 (193)
Q Consensus 71 kkGD~V~VI~GkdKGK~GkV~~V~~~~n~ViVE 103 (193)
-.|-+|.|..|++||-.|.|..+... .+-||
T Consensus 19 liGktV~I~kGpyKG~~GiVkd~t~~--~~RVE 49 (71)
T 2e70_A 19 LIGQTVRISQGPYKGYIGVVKDATES--TARVE 49 (71)
T ss_dssp STTSEEEECSSTTTTCEEEEEEECSS--CEEEE
T ss_pred cCCCEEEEeccCCCCeEEEEEECCCC--eEEEE
Confidence 36789999999999999999887664 55565
No 27
>1qp2_A Protein (PSAE protein); mainly beta, roll, pleckstrin topology, SH3-like, electron T; NMR {Nostoc SP} SCOP: b.34.4.2 PDB: 1qp3_A
Probab=73.55 E-value=2.7 Score=29.77 Aligned_cols=38 Identities=18% Similarity=0.283 Sum_probs=30.0
Q ss_pred eeeCCEEEEeecC--CCCeeeEEEEEEccC----CEEEEeceee
Q 029417 70 VKAGDTVKVIAGC--DKGKIGEITKVFRHN----STVMVKDINL 107 (193)
Q Consensus 70 IkkGD~V~VI~Gk--dKGK~GkV~~V~~~~----n~ViVEGvN~ 107 (193)
|.+|+.|.|++=. +-+.+|.|.+|+... =-|..|++|-
T Consensus 2 i~rGs~VrIlr~eSywy~~vG~V~~Vd~~~~~ypV~VrFekvNy 45 (70)
T 1qp2_A 2 VQRGSKVRILRPESYWFQDVGTVASVDQSGIKYPVIVRFEKVNY 45 (70)
T ss_dssp CCTTCEEEECCTTSTTTTCEEEEEEECCSSCSCSEEEECSSCCS
T ss_pred cCCCCEEEEcCccceeecceeEEEEEeCCCcEeeEEEEeccccc
Confidence 7899999999865 568999999999864 2355667775
No 28
>2oug_A Transcriptional activator RFAH; transcription factor, virulence, transcription pausing, transcription elongation; 2.10A {Escherichia coli}
Probab=71.84 E-value=0.0036 Score=49.06 Aligned_cols=32 Identities=22% Similarity=0.157 Sum_probs=22.8
Q ss_pred ceeeCCEEEEeecCCCCeeeEEEEEEccCCEEE
Q 029417 69 HVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVM 101 (193)
Q Consensus 69 ~IkkGD~V~VI~GkdKGK~GkV~~V~~~~n~Vi 101 (193)
.+..||+|.|+.|+++|-.|.|.+++.++ ++.
T Consensus 109 ~~~~Gd~V~V~~Gpf~g~~g~v~~v~~~k-r~~ 140 (162)
T 2oug_A 109 TPYPGDKVIITEGAFEGFQAIFTEPDGEA-RSM 140 (162)
T ss_dssp ------CTTHHHHHHHHHHHHTTCSSHHH-HHH
T ss_pred CCCCCCEEEEcccCCCCcEEEEEEECCCC-EEE
Confidence 47899999999999999999999998765 443
No 29
>3iz6_D 40S ribosomal protein S4 (S4E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=68.09 E-value=4.9 Score=34.83 Aligned_cols=37 Identities=30% Similarity=0.579 Sum_probs=28.4
Q ss_pred cceeeCCEEEEeecCCCCeeeEEEEEEccCC---EEEEec
Q 029417 68 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNS---TVMVKD 104 (193)
Q Consensus 68 ~~IkkGD~V~VI~GkdKGK~GkV~~V~~~~n---~ViVEG 104 (193)
.++..|-.|.|+.|+.-|.+|+|..+.+..+ .|.|++
T Consensus 173 ikfe~Gnl~mvtgG~n~GriG~I~~ie~~~gs~~iV~vkd 212 (265)
T 3iz6_D 173 IKFDVGNVVMVTGGRNTGRVGVIKNREKHKGSFETIHVED 212 (265)
T ss_dssp ECCSTTCEEEECSSSSCSCEEEEEEEECCSSSCCEEEECC
T ss_pred EEccCCCEEEEEcCCcceEEEEEEEEEEecCCCcEEEEEE
Confidence 3456788888999999999999999987543 455553
No 30
>3j20_E 30S ribosomal protein S4E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=64.54 E-value=3.8 Score=35.07 Aligned_cols=37 Identities=24% Similarity=0.390 Sum_probs=29.8
Q ss_pred cceeeCCEEEEeecCCCCeeeEEEEEEccC----CEEEEec
Q 029417 68 MHVKAGDTVKVIAGCDKGKIGEITKVFRHN----STVMVKD 104 (193)
Q Consensus 68 ~~IkkGD~V~VI~GkdKGK~GkV~~V~~~~----n~ViVEG 104 (193)
.++..|-.|.|+.|+.-|++|+|..+.+.. +.|.|++
T Consensus 177 ikf~~G~l~mvtgG~n~GriG~I~~ie~~~gs~~~~V~v~d 217 (243)
T 3j20_E 177 LPFEKGAYVFVTQGKNVARKGRIVEIKRFPMGWPDVVTIED 217 (243)
T ss_dssp EECCTTCEEEECSSSSTTCEEEEEECCCCCSSSCCEEEEEE
T ss_pred EeccCCCEEEEECCccceEEEEEEEEEEecCCCceEEEEEc
Confidence 456779999999999999999999987643 5577774
No 31
>4a18_E RPL6; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_E 4a1b_E 4a1d_E
Probab=63.63 E-value=5.6 Score=32.99 Aligned_cols=63 Identities=17% Similarity=0.254 Sum_probs=45.8
Q ss_pred ceeeCCEEEEeecCCCCeeeEEEEEEccCCEEEEec---eeeeeeeecCCcccCCceeEEEeecCcCCCeee
Q 029417 69 HVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKD---INLKTKHVKKREEEEQGQIIKIEAPIHSSNVML 137 (193)
Q Consensus 69 ~IkkGD~V~VI~GkdKGK~GkV~~V~~~~n~ViVEG---vN~~kkhvK~~~~~~~GgIi~~E~PIh~SNV~L 137 (193)
.|.+|..|+|++|.+.|+.-.+++... .+-++|-| +|-+. .+ .-.+.-++...--|++|||.+
T Consensus 44 si~pGtVlIiL~Gr~~GKrvV~LKql~-sgllLVtGP~~vn~vp--lr---rvn~~~vi~TstkvDis~vki 109 (191)
T 4a18_E 44 DIAPGTVLILLAGRFRGKRVVFLKQLK-SGLLLVTGPYKVNGVP--LK---RVNQAYTLSTSTKVDLTGVNT 109 (191)
T ss_dssp TCCTTEEEEECSSTTTTBEEEEEEECT-TSCEEEECCTTTSSCC--SE---EECGGGEEEEEEECCCTTCCG
T ss_pred cccCCCEEEEeccccCCCEEEEEEecC-CCeEEEecCccccCCc--eE---EEeeeeEEeeeeEeecccccc
Confidence 478999999999999999999999986 47888888 33111 00 012344566667789999887
No 32
>2xzm_W 40S ribosomal protein S4; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_W
Probab=62.10 E-value=11 Score=32.51 Aligned_cols=37 Identities=27% Similarity=0.554 Sum_probs=29.6
Q ss_pred cceeeCCEEEEeecCCCCeeeEEEEEEccC---CEEEEec
Q 029417 68 MHVKAGDTVKVIAGCDKGKIGEITKVFRHN---STVMVKD 104 (193)
Q Consensus 68 ~~IkkGD~V~VI~GkdKGK~GkV~~V~~~~---n~ViVEG 104 (193)
.++..|-.|.|+.|+.-|.+|+|..+.+.. +.|.|++
T Consensus 175 ikfe~G~l~mvtgG~n~GriG~I~~~e~~~gs~~iV~vkd 214 (260)
T 2xzm_W 175 AHLESGNVCYIQQGNNIGRVGIIQHIEKHQGSFDICHVKD 214 (260)
T ss_dssp CBCCSSCEEEECSSTTTTCEEEEEEEECCCSSCCEEEEEC
T ss_pred EEecCCCEEEEECCccceeEEEEEEEEecCCCCcEEEEEe
Confidence 346889999999999999999999876653 4566664
No 33
>3kbg_A 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.75A {Thermoplasma acidophilum}
Probab=59.56 E-value=7.1 Score=32.79 Aligned_cols=37 Identities=19% Similarity=0.375 Sum_probs=29.7
Q ss_pred ccceeeCCEEEEeecCCCCeeeEEEEEEccC----CEEEEe
Q 029417 67 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHN----STVMVK 103 (193)
Q Consensus 67 k~~IkkGD~V~VI~GkdKGK~GkV~~V~~~~----n~ViVE 103 (193)
..++..|-.|.|+.|+.-|++|+|..+.+.. +.|.|+
T Consensus 136 ~ikf~~G~l~mvtgG~n~GriG~I~~ie~~~gs~~~iV~v~ 176 (213)
T 3kbg_A 136 IIKMQPGNKAYITAGSHVNQTGTISKIEAKEGSSANLVHFQ 176 (213)
T ss_dssp EECCSTTCEEEECSSTTTTCEEEEEEECCCSCC--CEEEET
T ss_pred EEEcCCCCEEEEECCCcceEEEEEEEEEEccCCCCCEEEEE
Confidence 3456789999999999999999999998653 456676
No 34
>3bbo_X Ribosomal protein L27; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=58.01 E-value=2.1 Score=35.65 Aligned_cols=24 Identities=38% Similarity=0.448 Sum_probs=0.0
Q ss_pred hhhhhhhcccccccc-ccccccccC
Q 029417 4 MAALQSSMTSLSISS-NSFFGQRLS 27 (193)
Q Consensus 4 ~~~~~~~~~~l~~~~-~~~~~~~~~ 27 (193)
|..|-++|.|||||+ ++||.-+++
T Consensus 8 ~~~l~~~f~g~s~sssssf~~~~~~ 32 (198)
T 3bbo_X 8 SLNLIGAFKGLSLSSTSSFLRGDLS 32 (198)
T ss_dssp -------------------------
T ss_pred HHHHHHHhcccccccccceeccccc
Confidence 468999999999977 677766654
No 35
>3u5c_E RP5, S7, YS6, 40S ribosomal protein S4-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_D 3u5g_E
Probab=54.50 E-value=6.2 Score=34.14 Aligned_cols=36 Identities=36% Similarity=0.558 Sum_probs=26.0
Q ss_pred cceeeCCEEEEeecCCCCeeeEEEEEEccCC---EEEEe
Q 029417 68 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNS---TVMVK 103 (193)
Q Consensus 68 ~~IkkGD~V~VI~GkdKGK~GkV~~V~~~~n---~ViVE 103 (193)
.++..|-.|.|+.|+.-|.+|+|..+.+..+ .|.|+
T Consensus 173 ikfe~Gnl~mvtgG~n~GriG~I~~ie~~~gs~~iV~vk 211 (261)
T 3u5c_E 173 IKFDAGKLVYVTGGRNLGRIGTIVHKERHDGGFDLVHIK 211 (261)
T ss_dssp ECCCSSCCEEECSSTTTTCBCCCCEEECCTTSCCEEEEE
T ss_pred EEccCCCEEEEEcCCcceEEEEEEEEEEecCCCcEEEEE
Confidence 3456677888888888888888888877543 44454
No 36
>1at0_A 17-hedgehog; developmental signaling molecule, cholesterol transfer, signaling protein; 1.90A {Drosophila melanogaster} SCOP: b.86.1.1
Probab=49.28 E-value=24 Score=26.90 Aligned_cols=15 Identities=13% Similarity=-0.026 Sum_probs=12.7
Q ss_pred cceeeCCEEEEeecC
Q 029417 68 MHVKAGDTVKVIAGC 82 (193)
Q Consensus 68 ~~IkkGD~V~VI~Gk 82 (193)
-.++.||.|.+..|.
T Consensus 90 ~~l~~GD~v~~~~~~ 104 (145)
T 1at0_A 90 DRIEEKNQVLVRDVE 104 (145)
T ss_dssp GGCCTTCEEEEECTT
T ss_pred HHCcCCCEEEEecCC
Confidence 468999999999874
No 37
>3iz5_G 60S ribosomal protein L6 (L6E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_G
Probab=48.08 E-value=7.7 Score=32.81 Aligned_cols=63 Identities=17% Similarity=0.202 Sum_probs=44.9
Q ss_pred ceeeCCEEEEeecCCCCeeeEEEEEEccCCEEEEece---eeeeeeecCCcccCCceeEEEeecCcCCCeee
Q 029417 69 HVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDI---NLKTKHVKKREEEEQGQIIKIEAPIHSSNVML 137 (193)
Q Consensus 69 ~IkkGD~V~VI~GkdKGK~GkV~~V~~~~n~ViVEGv---N~~kkhvK~~~~~~~GgIi~~E~PIh~SNV~L 137 (193)
.|.+|..+++++|++.||.-.++++.. .|.++|.|- |-+..+. -.+.-++...--|++|+|.+
T Consensus 74 si~pGtVlIil~Gr~~GKrvVfLkqL~-sgllLVtGP~~lNgVplrR-----~~qk~viaTstkIdIs~Vki 139 (219)
T 3iz5_G 74 TITPGTVLILLAGRYMGKRVVFLKQLQ-SGLLLITGPFKINGVPIRR-----VNQAYVIATSTKVDISKVNV 139 (219)
T ss_dssp HCSCCSCEECSSSSSSCCEECEEEESS-SSSEEECCCCSSSCCCCEE-----ESSSSCEECSCCCSCSSCCC
T ss_pred cccCCCEEEEeccccCCcEEEEEEecC-CCeEEEcCCccccCCccEE-----echhhEEecceEeecCcccc
Confidence 477899999999999999999999875 689999873 3332111 01223444455688888887
No 38
>1jb0_E Photosystem 1 reaction centre subunit IV; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: b.34.4.2 PDB: 3pcq_E*
Probab=47.66 E-value=22 Score=25.34 Aligned_cols=38 Identities=24% Similarity=0.377 Sum_probs=28.1
Q ss_pred eeeCCEEEEeecC--CCCeeeEEEEEEcc---CCEEEE--eceee
Q 029417 70 VKAGDTVKVIAGC--DKGKIGEITKVFRH---NSTVMV--KDINL 107 (193)
Q Consensus 70 IkkGD~V~VI~Gk--dKGK~GkV~~V~~~---~n~ViV--EGvN~ 107 (193)
|.+||.|.|++=. .-..+|+|..|+.. +.-|+| +.+|-
T Consensus 1 i~RGskVrIlR~ESYWyn~vGtVasVD~s~gi~YPV~VRFdkVNY 45 (75)
T 1jb0_E 1 VQRGSKVKILRPESYWYNEVGTVASVDQTPGVKYPVIVRFDKVNY 45 (75)
T ss_dssp CCTTCEEEECCTTCTTBTCEEEEEEECCCTTCSCCEEEECSSCCS
T ss_pred CCCCCEEEEccccceeecCcceEEEEecCCCccccEEEEEeeecc
Confidence 5789999999865 56789999999986 233554 44543
No 39
>2zjr_M 50S ribosomal protein L19; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.6 PDB: 1nwx_N* 1nwy_N* 1sm1_N* 1xbp_N* 2zjp_M* 2zjq_M 1nkw_N 3cf5_M* 3dll_M* 3pio_M* 3pip_M* 1pnu_N 1pny_N 1vor_Q 1vou_Q 1vow_Q 1voy_Q 1vp0_Q
Probab=47.63 E-value=29 Score=28.16 Aligned_cols=87 Identities=21% Similarity=0.197 Sum_probs=38.5
Q ss_pred CCCCcccccceeeCCEEEEeecC---CCC----eeeEEEEEEccC--CEEEEeceeeeeeeecCCcccCCceeEEEeecC
Q 029417 60 NSLPVLHKMHVKAGDTVKVIAGC---DKG----KIGEITKVFRHN--STVMVKDINLKTKHVKKREEEEQGQIIKIEAPI 130 (193)
Q Consensus 60 rs~p~~~k~~IkkGD~V~VI~Gk---dKG----K~GkV~~V~~~~--n~ViVEGvN~~kkhvK~~~~~~~GgIi~~E~PI 130 (193)
..+| .++.||+|.|-.=- +|. -+|.|+++.... .+.+|..+ ..|-=++.-.|+
T Consensus 22 ~diP-----~Fr~GDtV~V~vkI~EG~KeRiQ~FeGVVIarr~~Gl~sTFTVRki-------------s~GvGVER~Fpl 83 (166)
T 2zjr_M 22 RQLP-----DFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGSRKSFTVRKI-------------SFGEGVERVFPF 83 (166)
T ss_dssp CCCC-----CCSSSEEEEEECCTTSSSCCCCEEEECCEEECCCCGGGCEEEEEEE-------------ETTEEEEEEEET
T ss_pred cCCC-----CcCCCCEEEEEEEEecCCeeeecceEEEEEEEeCCCCCcEEEEEEe-------------cCCeeEEEEEec
Confidence 4566 38999999997421 222 357776654322 12333322 123335777899
Q ss_pred cCCCeeeeec-CCCCeeeEE--EEEccCCcEEEEEcc
Q 029417 131 HSSNVMLYSK-EMEVASRVG--HKVLDDGTRVRYLIK 164 (193)
Q Consensus 131 h~SNV~Lv~p-~~~kptRVg--~r~~edGkKvRv~kk 164 (193)
|.-+|.=+.- ..|+..|-. |--+..|+.-|+-.+
T Consensus 84 hSP~I~kIEVvrrGKVRRAKLYYLRd~~GKaARIke~ 120 (166)
T 2zjr_M 84 ASPLVNQVTIVERGKVRRAKLYYLRELRGKAARIKSD 120 (166)
T ss_dssp TCTTEEEEEEEECCCCSSSCCGGGCC-----------
T ss_pred CCCccceEEEEeccccchhheeeccCCCCchhheehh
Confidence 9666543331 224443333 322345666666554
No 40
>4a17_P RPL21, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_P 4a1c_P 4a1e_P
Probab=42.86 E-value=23 Score=28.42 Aligned_cols=47 Identities=26% Similarity=0.478 Sum_probs=32.3
Q ss_pred ceeeCCEEEEee-c---------CCCCeeeEEEEEEcc----------CCEEEEeceeeeeeeecCC
Q 029417 69 HVKAGDTVKVIA-G---------CDKGKIGEITKVFRH----------NSTVMVKDINLKTKHVKKR 115 (193)
Q Consensus 69 ~IkkGD~V~VI~-G---------kdKGK~GkV~~V~~~----------~n~ViVEGvN~~kkhvK~~ 115 (193)
..++||.|-|.. | .+-|++|.|..|... +++++...+|+.--|++++
T Consensus 33 ~yk~GD~VdIk~~gsVqKGmPHk~YHGkTGrV~nvtq~AvgiiVnk~v~gkil~KrI~VriEHik~s 99 (157)
T 4a17_P 33 TYKVGEYVDIMVDGSQHKGMPYKLYHGRTGKVFNVNPRSIGVIVHRIVNGRYIEKRLHVKIEHVRPS 99 (157)
T ss_dssp CCCTTCEEEECCCSSCCTTCCCGGGTTEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEEGGGEEEC
T ss_pred HhcCCCEEEEeccCceecCCCCccccCCcccEeeecCeEEEEEEEEeECCEeeeeEEEEeHHHcccc
Confidence 467999998863 2 266999999755433 4566667777776676654
No 41
>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A
Probab=42.50 E-value=21 Score=22.10 Aligned_cols=16 Identities=19% Similarity=0.335 Sum_probs=12.5
Q ss_pred cceeeCCEEEEeecCC
Q 029417 68 MHVKAGDTVKVIAGCD 83 (193)
Q Consensus 68 ~~IkkGD~V~VI~Gkd 83 (193)
+.+++||.|.|+.-.+
T Consensus 18 Ls~~~Gd~i~v~~~~~ 33 (58)
T 1zuy_A 18 LPLKKGDVIYITREEP 33 (58)
T ss_dssp CCBCTTCEEEEEEECT
T ss_pred CCCCCCCEEEEEEecC
Confidence 3489999999997543
No 42
>2vc8_A Enhancer of mRNA-decapping protein 3; P-BODY component, cytoplasm, SM-like protein, protein-binding; 1.31A {Homo sapiens}
Probab=41.43 E-value=64 Score=23.37 Aligned_cols=34 Identities=21% Similarity=0.279 Sum_probs=30.3
Q ss_pred eCCEEEEeecCCCCe-eeEEEEEEccCCEEEEece
Q 029417 72 AGDTVKVIAGCDKGK-IGEITKVFRHNSTVMVKDI 105 (193)
Q Consensus 72 kGD~V~VI~GkdKGK-~GkV~~V~~~~n~ViVEGv 105 (193)
-|-.|-+..|.+-|. +|+|..|++.++.+.+..+
T Consensus 8 iGs~VSi~c~d~lGvYQG~i~~vd~~~~tItL~~~ 42 (84)
T 2vc8_A 8 LGSIVSINCGDSLGVYQGRVSAVDQVSQTISLTRP 42 (84)
T ss_dssp TTCEEEEECCTTTCEEEEEEEEEETTTTEEEEEEE
T ss_pred cCCEEEEEECCCceEEEEEEEEeccCCCeEEEehh
Confidence 477899999999986 7999999999999988865
No 43
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=41.42 E-value=19 Score=24.00 Aligned_cols=24 Identities=13% Similarity=0.159 Sum_probs=19.3
Q ss_pred cCCCHHHHHhhCCCCCCcccccceeeCCEEEEeec
Q 029417 47 VRLKRWERKECKPNSLPVLHKMHVKAGDTVKVIAG 81 (193)
Q Consensus 47 ~~l~k~lR~k~~~rs~p~~~k~~IkkGD~V~VI~G 81 (193)
.-|.+++|++++ |..||.|.+..-
T Consensus 24 ItIPkeiR~~Lg-----------i~~Gd~l~i~~~ 47 (59)
T 1yfb_A 24 VVIPIELRRTLG-----------IAEKDALEIYVD 47 (59)
T ss_dssp EECCHHHHHHTT-----------CCTTCEEEEEEE
T ss_pred EEeCHHHHHHcC-----------CCCCCEEEEEEE
Confidence 347899999996 579999988764
No 44
>3izc_G 60S ribosomal protein RPL6 (L6E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_G 3o58_F 3o5h_F 3u5e_E 3u5i_E 4b6a_E
Probab=37.89 E-value=16 Score=29.92 Aligned_cols=63 Identities=16% Similarity=0.219 Sum_probs=44.5
Q ss_pred ceeeCCEEEEeecCCCCeeeEEEEEEccCCEEEEec---eeeeeeeecCCcccCCceeEEEeecCcCCCeee
Q 029417 69 HVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKD---INLKTKHVKKREEEEQGQIIKIEAPIHSSNVML 137 (193)
Q Consensus 69 ~IkkGD~V~VI~GkdKGK~GkV~~V~~~~n~ViVEG---vN~~kkhvK~~~~~~~GgIi~~E~PIh~SNV~L 137 (193)
.|.+|..+++++|.++||.-.+++... .|-++|-| +|-+..+ .-.+.-+|...--|++|+|.+
T Consensus 33 Si~pGtvlIil~Gr~~GkrvVfLKql~-sglllVTGP~~lNgvplr-----R~~q~~vIaTstkidis~vki 98 (176)
T 3izc_G 33 SLVPGTVLILLAGRFRGKRVVYLKHLE-DNTLLISGPFKVNGVPLR-----RVNARYVIATSTKVSVEGVNV 98 (176)
T ss_dssp HCCCCSCEECCSSSSSCCCBEEEEESS-SSSEEEECCCSSSCCCCE-----EESSSSCEECSCCCSSSSCCC
T ss_pred cCCCCCEEEEeccccCCCEEEEEEecC-CCeEEEecCceecCCcce-----eeecceEEeeeeeeecccccc
Confidence 477999999999999999999999875 67888876 3332210 001233445556788999887
No 45
>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A
Probab=37.36 E-value=19 Score=22.58 Aligned_cols=15 Identities=20% Similarity=0.297 Sum_probs=11.9
Q ss_pred cceeeCCEEEEeecC
Q 029417 68 MHVKAGDTVKVIAGC 82 (193)
Q Consensus 68 ~~IkkGD~V~VI~Gk 82 (193)
+.+++||.|.|+.-.
T Consensus 21 Ls~~~Gd~i~v~~~~ 35 (59)
T 2g6f_X 21 LSFSKGDVIHVTRVE 35 (59)
T ss_dssp CCBCTTCEEEEEEEC
T ss_pred cCCCCCCEEEEEEec
Confidence 448999999999743
No 46
>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens}
Probab=37.17 E-value=19 Score=23.74 Aligned_cols=15 Identities=20% Similarity=0.388 Sum_probs=12.0
Q ss_pred cceeeCCEEEEeecC
Q 029417 68 MHVKAGDTVKVIAGC 82 (193)
Q Consensus 68 ~~IkkGD~V~VI~Gk 82 (193)
+.+++||.|.|+.-.
T Consensus 20 Lsf~~Gd~i~v~~~~ 34 (68)
T 2ew3_A 20 LGFKEGDIITLTNQI 34 (68)
T ss_dssp CCBCTTCEEEEEEES
T ss_pred cCCCCCCEEEEEEec
Confidence 348999999999843
No 47
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=36.20 E-value=34 Score=21.74 Aligned_cols=25 Identities=32% Similarity=0.375 Sum_probs=19.4
Q ss_pred cCCCHHHHHhhCCCCCCcccccceeeCCEEEEeecC
Q 029417 47 VRLKRWERKECKPNSLPVLHKMHVKAGDTVKVIAGC 82 (193)
Q Consensus 47 ~~l~k~lR~k~~~rs~p~~~k~~IkkGD~V~VI~Gk 82 (193)
..+.+++|++++ |..||.|.+..-.
T Consensus 14 i~IPk~ir~~lg-----------i~~Gd~v~i~~~~ 38 (53)
T 2l66_A 14 VTIPAKVRQKFQ-----------IKEGDLVKVTFDE 38 (53)
T ss_dssp BCCCHHHHHHSC-----------CCTTCEEEEEECS
T ss_pred EEeCHHHHHHcC-----------cCCCCEEEEEEEC
Confidence 357788999885 5799999988643
No 48
>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1
Probab=35.08 E-value=29 Score=21.50 Aligned_cols=16 Identities=19% Similarity=0.488 Sum_probs=12.5
Q ss_pred cceeeCCEEEEeecCC
Q 029417 68 MHVKAGDTVKVIAGCD 83 (193)
Q Consensus 68 ~~IkkGD~V~VI~Gkd 83 (193)
+.+++||.|.|+.-.+
T Consensus 18 Ls~~~Gd~i~v~~~~~ 33 (58)
T 1zuu_A 18 ITITPGDKISLVARDT 33 (58)
T ss_dssp CCBCTTCCEEEEECCS
T ss_pred ccCCCCCEEEEeEcCC
Confidence 4489999999997543
No 49
>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A
Probab=34.42 E-value=23 Score=22.06 Aligned_cols=15 Identities=20% Similarity=0.570 Sum_probs=12.0
Q ss_pred cceeeCCEEEEeecC
Q 029417 68 MHVKAGDTVKVIAGC 82 (193)
Q Consensus 68 ~~IkkGD~V~VI~Gk 82 (193)
+.+++||.|.|+.-.
T Consensus 18 Ls~~~Gd~i~v~~~~ 32 (58)
T 1uti_A 18 LGFRSGEVVEVLDSS 32 (58)
T ss_dssp CCBCTTCEEEEEECC
T ss_pred CCCCCCCEEEEEEEC
Confidence 448999999999753
No 50
>3iz5_U 60S ribosomal protein L21 (L21E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_U
Probab=34.01 E-value=23 Score=28.65 Aligned_cols=34 Identities=26% Similarity=0.410 Sum_probs=23.3
Q ss_pred ceeeCCEEEEee-c---------CCCCeeeEEEEEEccCCEEEE
Q 029417 69 HVKAGDTVKVIA-G---------CDKGKIGEITKVFRHNSTVMV 102 (193)
Q Consensus 69 ~IkkGD~V~VI~-G---------kdKGK~GkV~~V~~~~n~ViV 102 (193)
..++||.|-|.. | .+-|++|.|..|...--.|+|
T Consensus 33 ~yk~GD~VdIk~~gsVqKGmPHk~YHGkTGrV~nvt~~AvgV~V 76 (164)
T 3iz5_U 33 TYKVGEHVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEI 76 (164)
T ss_dssp CCCTTCEEEECCCTTCCSSCCCGGGTTEEEEEEEECSSSEEEEE
T ss_pred HhCCCCEEEEEccCcccCCCCCcccCCCCeeEEeecCCEEEEEE
Confidence 457999998863 2 266999999877655433333
No 51
>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A
Probab=33.70 E-value=23 Score=22.47 Aligned_cols=16 Identities=19% Similarity=0.335 Sum_probs=12.3
Q ss_pred cceeeCCEEEEeecCC
Q 029417 68 MHVKAGDTVKVIAGCD 83 (193)
Q Consensus 68 ~~IkkGD~V~VI~Gkd 83 (193)
+.+++||.|.|+.-.+
T Consensus 23 Ls~~~Gd~i~v~~~~~ 38 (64)
T 2ak5_A 23 LSFSKGDVIHVTRVEE 38 (64)
T ss_dssp CCBCTTCEEEEEECCT
T ss_pred ccCCCCCEEEEeEecC
Confidence 4489999999987433
No 52
>1dj7_B Ferredoxin thioredoxin reductase: variable chain; 4Fe-4S cluster binding fold with CXCX16CXCX8CXC binding MOTI electron transport; 1.60A {Synechocystis SP} SCOP: b.34.4.3 PDB: 2pu9_B 2pvo_B 2puo_B 2puk_B 2pvd_B 2pvg_B
Probab=33.69 E-value=26 Score=25.01 Aligned_cols=26 Identities=31% Similarity=0.492 Sum_probs=18.4
Q ss_pred eeCCEEEEeec--------------CCCCeeeEEEEEEcc
Q 029417 71 KAGDTVKVIAG--------------CDKGKIGEITKVFRH 96 (193)
Q Consensus 71 kkGD~V~VI~G--------------kdKGK~GkV~~V~~~ 96 (193)
+.||+|.|.+. .-+|.+|+|.++...
T Consensus 2 k~GdrVrV~~sv~Vyh~P~~r~~~fDl~GmEGeV~~~v~~ 41 (75)
T 1dj7_B 2 NVGDRVRVTSSVVVYHHPEHKKTAFDLQGMEGEVAAVLTE 41 (75)
T ss_dssp CTTCEEEECSCCEESCCTTSTTSCEECTTCEEEEEEECSE
T ss_pred CCCCEEEEcccEEEEeCCccCCCCcccccCEEEEEEEEee
Confidence 57899988753 135788888877654
No 53
>2jz2_A SSL0352 protein; SH3-like, synechocystis SP. PCC 6803, targe PSI, protein structure initiative, northeast structural GEN consortium, NESG; NMR {Synechocystis SP} PDB: 3c4s_A
Probab=33.47 E-value=47 Score=23.07 Aligned_cols=40 Identities=20% Similarity=0.160 Sum_probs=34.1
Q ss_pred eeeCCEEEEeecC--CCCeeeEEEEEEccCCEEEEeceeeee
Q 029417 70 VKAGDTVKVIAGC--DKGKIGEITKVFRHNSTVMVKDINLKT 109 (193)
Q Consensus 70 IkkGD~V~VI~Gk--dKGK~GkV~~V~~~~n~ViVEGvN~~k 109 (193)
|.+|-+|.|+.-. +-|-+|.|.+|...+--|+.||=|-.|
T Consensus 2 ilPG~~V~V~np~~~Yy~y~G~VQRvsdgkaaVLFEGGnWDK 43 (66)
T 2jz2_A 2 IFPGATVRVTNVDDTYYRFEGLVQRVSDGKAAVLFENGNWDK 43 (66)
T ss_dssp CCTTCEEEECCTTSTTBTCEEEEEEEETTEEEEEEESSSCEE
T ss_pred ccCCCEEEEeCCCCcccceeEEEEEecCCcEEEEecCCCcee
Confidence 6789999999764 679999999999888889999977654
No 54
>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A
Probab=33.11 E-value=24 Score=22.82 Aligned_cols=15 Identities=33% Similarity=0.430 Sum_probs=11.7
Q ss_pred cceeeCCEEEEeecC
Q 029417 68 MHVKAGDTVKVIAGC 82 (193)
Q Consensus 68 ~~IkkGD~V~VI~Gk 82 (193)
+.+++||.|.|+.-.
T Consensus 20 Lsf~~Gd~i~v~~~~ 34 (67)
T 2bzy_A 20 LALEVGDIVKVTRMN 34 (67)
T ss_dssp CCBCTTCEEEEEEEC
T ss_pred cccCCCCEEEEEEec
Confidence 348999999998643
No 55
>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A
Probab=33.04 E-value=38 Score=21.83 Aligned_cols=15 Identities=27% Similarity=0.333 Sum_probs=11.9
Q ss_pred cceeeCCEEEEeecC
Q 029417 68 MHVKAGDTVKVIAGC 82 (193)
Q Consensus 68 ~~IkkGD~V~VI~Gk 82 (193)
+.+++||.|.|+.-.
T Consensus 20 Ls~~~Gd~i~v~~~~ 34 (69)
T 1ruw_A 20 LPLKKGDIVFISRDE 34 (69)
T ss_dssp CCBCTTCEEEEEEEC
T ss_pred ccCCCCCEEEEEEec
Confidence 448999999999643
No 56
>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A
Probab=32.77 E-value=25 Score=21.78 Aligned_cols=15 Identities=20% Similarity=0.501 Sum_probs=12.0
Q ss_pred cceeeCCEEEEeecC
Q 029417 68 MHVKAGDTVKVIAGC 82 (193)
Q Consensus 68 ~~IkkGD~V~VI~Gk 82 (193)
+.+++||.|.|+.-.
T Consensus 19 Ls~~~Gd~i~v~~~~ 33 (58)
T 2vwf_A 19 LGFRRGDFIHVMDNS 33 (58)
T ss_dssp CCBCTTCEEEEEECC
T ss_pred cCCCCCCEEEEEEcC
Confidence 448999999999743
No 57
>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}
Probab=32.75 E-value=25 Score=22.93 Aligned_cols=16 Identities=25% Similarity=0.455 Sum_probs=12.4
Q ss_pred cceeeCCEEEEeecCC
Q 029417 68 MHVKAGDTVKVIAGCD 83 (193)
Q Consensus 68 ~~IkkGD~V~VI~Gkd 83 (193)
+.+++||.|.|+.-.+
T Consensus 18 Ls~~~Gd~i~v~~~~~ 33 (65)
T 2nwm_A 18 LTLQKGDIVYIHKEVD 33 (65)
T ss_dssp CCBCTTCEEEEEECCT
T ss_pred cCCcCCCEEEEEEecC
Confidence 3489999999997543
No 58
>3dcl_A TM1086; SAD, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, U function; 2.25A {Thermotoga maritima} PDB: 3n99_A
Probab=32.63 E-value=57 Score=28.47 Aligned_cols=33 Identities=30% Similarity=0.361 Sum_probs=27.5
Q ss_pred eeCCEEEEeecCCCCeeeEEEEEEccCCEEEEe
Q 029417 71 KAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVK 103 (193)
Q Consensus 71 kkGD~V~VI~GkdKGK~GkV~~V~~~~n~ViVE 103 (193)
-.|.+..|++|.-||..|.|+-=.---+.|+|.
T Consensus 85 CiGN~A~VvSG~AKG~~G~VtGkHGGieHVlV~ 117 (284)
T 3dcl_A 85 CIGNEVIVMSGDAKGSRGFVTGKHGGVNHVLVH 117 (284)
T ss_dssp CBTCEEEECSSTTTTCEEEEEEEETTTTEEEEE
T ss_pred ecCceeEEeecccCCCcceEecccCCeeeEEEE
Confidence 479999999999999999998766555667765
No 59
>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens}
Probab=32.39 E-value=25 Score=22.80 Aligned_cols=14 Identities=29% Similarity=0.311 Sum_probs=11.3
Q ss_pred ceeeCCEEEEeecC
Q 029417 69 HVKAGDTVKVIAGC 82 (193)
Q Consensus 69 ~IkkGD~V~VI~Gk 82 (193)
.+++||.|.|+.-.
T Consensus 26 s~~~Gd~i~v~~~~ 39 (67)
T 2eyx_A 26 ALEVGELVKVTKIN 39 (67)
T ss_dssp CBCSSEEEEEEEEC
T ss_pred ccCCCCEEEEEEec
Confidence 38999999998643
No 60
>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus}
Probab=32.31 E-value=26 Score=22.02 Aligned_cols=15 Identities=20% Similarity=0.372 Sum_probs=11.9
Q ss_pred cceeeCCEEEEeecC
Q 029417 68 MHVKAGDTVKVIAGC 82 (193)
Q Consensus 68 ~~IkkGD~V~VI~Gk 82 (193)
+.+++||.|.|+.-.
T Consensus 22 Ls~~~Gd~i~v~~~~ 36 (60)
T 2xmf_A 22 LSFNANDIIDIIKED 36 (60)
T ss_dssp CCBCTTCEEEEEEEC
T ss_pred cCCCCCCEEEEEEec
Confidence 348999999998743
No 61
>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae}
Probab=32.28 E-value=47 Score=20.28 Aligned_cols=15 Identities=33% Similarity=0.674 Sum_probs=12.1
Q ss_pred cceeeCCEEEEeecC
Q 029417 68 MHVKAGDTVKVIAGC 82 (193)
Q Consensus 68 ~~IkkGD~V~VI~Gk 82 (193)
+.+++||.|.|+.-.
T Consensus 17 Ls~~~Gd~i~v~~~~ 31 (54)
T 2a28_A 17 ISIDPGDIITVIRGD 31 (54)
T ss_dssp CCBCTTCEEEEEECC
T ss_pred ccCCCCCEEEEEEec
Confidence 348999999999754
No 62
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=31.67 E-value=47 Score=26.14 Aligned_cols=29 Identities=7% Similarity=0.116 Sum_probs=21.9
Q ss_pred eeeCCEEEEeecCCCCeeeEEEEEEccCC
Q 029417 70 VKAGDTVKVIAGCDKGKIGEITKVFRHNS 98 (193)
Q Consensus 70 IkkGD~V~VI~GkdKGK~GkV~~V~~~~n 98 (193)
|++||.|.|---++--..|.|+.++...+
T Consensus 70 I~~GD~VlVe~~~yd~~KG~Ii~r~~~de 98 (143)
T 1d7q_A 70 INTSDIILVGLRDYQDNKADVILKYNADE 98 (143)
T ss_dssp CCTTCEEEEECSSSSSSCCEEEEEECTTT
T ss_pred ecCCCEEEEeeccCCCCeEEEEEEeCHHH
Confidence 89999999975554444589988887654
No 63
>3izc_a 60S ribosomal protein RPL27 (L27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_a 3u5e_Z 3u5i_Z 4b6a_Z
Probab=31.63 E-value=2.9 Score=33.00 Aligned_cols=39 Identities=28% Similarity=0.301 Sum_probs=32.6
Q ss_pred eeeCCEEEEeecCCCCeeeEEEEEEccC------CEEEEeceeee
Q 029417 70 VKAGDTVKVIAGCDKGKIGEITKVFRHN------STVMVKDINLK 108 (193)
Q Consensus 70 IkkGD~V~VI~GkdKGK~GkV~~V~~~~------n~ViVEGvN~~ 108 (193)
+++|-.|.|++|.+.|+...|++.+.+. +.++|-|+...
T Consensus 5 ~kpGkVvivl~GryaGkKaVivk~~d~gt~d~py~halVaGIdry 49 (136)
T 3izc_a 5 LKAGKVAVVVRGRYAGKKVVIVKPHDEGSKSHPFGHALVAGIERY 49 (136)
T ss_dssp CCCCCCCBCCCSSSSCCBCBCCCCSSSCSCCSSSCCSCCBCCSSS
T ss_pred ccCCEEEEEeccccCCcEEEEEEecCCCCCCCccceEEEEecccC
Confidence 6889999999999999999999887654 36888887654
No 64
>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus}
Probab=31.49 E-value=27 Score=21.98 Aligned_cols=14 Identities=14% Similarity=0.294 Sum_probs=11.4
Q ss_pred cceeeCCEEEEeec
Q 029417 68 MHVKAGDTVKVIAG 81 (193)
Q Consensus 68 ~~IkkGD~V~VI~G 81 (193)
+.+++||.|.|+.-
T Consensus 23 Ls~~~Gd~i~v~~~ 36 (60)
T 2gnc_A 23 LSFKKGASLLLYHR 36 (60)
T ss_dssp CCBCTTCEEEEEEE
T ss_pred cCCCCCCEEEEEEe
Confidence 34899999999874
No 65
>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N protein 1; endocytosis, N-WAsp, dynamin, pacsin I, transferase; 2.64A {Mus musculus} PDB: 2x3x_D
Probab=31.40 E-value=34 Score=21.30 Aligned_cols=14 Identities=29% Similarity=0.529 Sum_probs=11.3
Q ss_pred cceeeCCEEEEeec
Q 029417 68 MHVKAGDTVKVIAG 81 (193)
Q Consensus 68 ~~IkkGD~V~VI~G 81 (193)
+.+++||.|.|+.-
T Consensus 20 Ls~~~Gd~i~v~~~ 33 (60)
T 2x3w_D 20 LSFKAGDELTKLGE 33 (60)
T ss_dssp CCBCTTCEEEECSC
T ss_pred ccCCCCCEEEEEEc
Confidence 34899999999864
No 66
>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=30.95 E-value=27 Score=23.22 Aligned_cols=14 Identities=14% Similarity=0.446 Sum_probs=11.4
Q ss_pred cceeeCCEEEEeec
Q 029417 68 MHVKAGDTVKVIAG 81 (193)
Q Consensus 68 ~~IkkGD~V~VI~G 81 (193)
+.+++||.|.|+.-
T Consensus 24 Ls~~~Gd~i~v~~~ 37 (78)
T 2yuo_A 24 LGFRKNDIITIISQ 37 (78)
T ss_dssp CCBCTTCEEEEEEC
T ss_pred ccCCCCCEEEEEEe
Confidence 34899999999973
No 67
>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A
Probab=30.75 E-value=28 Score=21.88 Aligned_cols=16 Identities=25% Similarity=0.555 Sum_probs=12.3
Q ss_pred cceeeCCEEEEeecCC
Q 029417 68 MHVKAGDTVKVIAGCD 83 (193)
Q Consensus 68 ~~IkkGD~V~VI~Gkd 83 (193)
+.+++||.|.|+.-.+
T Consensus 21 Ls~~~Gd~i~v~~~~~ 36 (60)
T 1w70_A 21 LNFKAGDVIFLLSRIN 36 (60)
T ss_dssp CCBCTTCEEEEEEECS
T ss_pred ccCCCCCEEEEEEeCC
Confidence 3489999999997543
No 68
>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A
Probab=30.70 E-value=48 Score=20.40 Aligned_cols=15 Identities=27% Similarity=0.454 Sum_probs=12.0
Q ss_pred cceeeCCEEEEeecC
Q 029417 68 MHVKAGDTVKVIAGC 82 (193)
Q Consensus 68 ~~IkkGD~V~VI~Gk 82 (193)
+.+++||.|.|+.-.
T Consensus 19 Ls~~~Gd~i~v~~~~ 33 (58)
T 1sem_A 19 LAFKRGDVITLINKD 33 (58)
T ss_dssp CCBCTTCEEEEEECS
T ss_pred cCCCCCCEEEEEEec
Confidence 348999999999753
No 69
>4b6m_A Tubulin-specific chaperone, putative; structural protein; 1.59A {Trypanosoma brucei}
Probab=30.64 E-value=45 Score=23.94 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=19.0
Q ss_pred ceeeCCEEEEeecCCCCeeeEEEEEEc
Q 029417 69 HVKAGDTVKVIAGCDKGKIGEITKVFR 95 (193)
Q Consensus 69 ~IkkGD~V~VI~GkdKGK~GkV~~V~~ 95 (193)
.|+.||+|+|..| ++.|+|..|=+
T Consensus 5 ~i~vG~Rv~v~~~---~~~G~VryvG~ 28 (84)
T 4b6m_A 5 TIHVGDRCLCRPG---DRLGSVRFVGR 28 (84)
T ss_dssp CCCTTCEEEETTT---TEEEEEEEEEE
T ss_pred CcccCCEEEEcCC---CeEEEEEEEec
Confidence 4789999999544 57899988864
No 70
>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}
Probab=30.58 E-value=28 Score=22.90 Aligned_cols=16 Identities=19% Similarity=0.437 Sum_probs=12.4
Q ss_pred cceeeCCEEEEeecCC
Q 029417 68 MHVKAGDTVKVIAGCD 83 (193)
Q Consensus 68 ~~IkkGD~V~VI~Gkd 83 (193)
+.+++||.|.|+.-.+
T Consensus 30 Ls~~~Gd~i~v~~~~~ 45 (73)
T 3c0c_A 30 LGFREGDLITLTNQID 45 (73)
T ss_dssp CCBCTTCEEEEEEECS
T ss_pred ccCcCCCEEEEEEecC
Confidence 4489999999997533
No 71
>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human osteoclast stimulating factor 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.34 E-value=32 Score=22.22 Aligned_cols=14 Identities=14% Similarity=0.294 Sum_probs=11.4
Q ss_pred cceeeCCEEEEeec
Q 029417 68 MHVKAGDTVKVIAG 81 (193)
Q Consensus 68 ~~IkkGD~V~VI~G 81 (193)
+.+++||.|.|+.-
T Consensus 24 Ls~~~Gd~i~v~~~ 37 (68)
T 1x2k_A 24 LYFEEGDIIYITDM 37 (68)
T ss_dssp CCCCSSCEEEEEEC
T ss_pred ccCCCCCEEEEEEc
Confidence 44899999999864
No 72
>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1 PDB: 1h92_A 1kik_A
Probab=30.25 E-value=34 Score=21.56 Aligned_cols=14 Identities=7% Similarity=0.501 Sum_probs=11.6
Q ss_pred cceeeCCEEEEeec
Q 029417 68 MHVKAGDTVKVIAG 81 (193)
Q Consensus 68 ~~IkkGD~V~VI~G 81 (193)
+.+++||.|.|+.-
T Consensus 23 Ls~~~Gd~i~v~~~ 36 (62)
T 2iim_A 23 LGFEKGEQLRILEQ 36 (62)
T ss_dssp CCBCTTCEEEEEEC
T ss_pred cCCCCCCEEEEEEc
Confidence 34899999999975
No 73
>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=29.95 E-value=27 Score=23.03 Aligned_cols=14 Identities=14% Similarity=0.356 Sum_probs=11.3
Q ss_pred cceeeCCEEEEeec
Q 029417 68 MHVKAGDTVKVIAG 81 (193)
Q Consensus 68 ~~IkkGD~V~VI~G 81 (193)
+.+++||.|.|+.-
T Consensus 27 Ls~~~Gd~i~v~~~ 40 (74)
T 1j3t_A 27 LNFSKHDIITVLEQ 40 (74)
T ss_dssp CCBCTTCEEEEEEE
T ss_pred cCCCCCCEEEEEec
Confidence 34899999999863
No 74
>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.84 E-value=34 Score=22.69 Aligned_cols=13 Identities=38% Similarity=0.652 Sum_probs=10.9
Q ss_pred cceeeCCEEEEee
Q 029417 68 MHVKAGDTVKVIA 80 (193)
Q Consensus 68 ~~IkkGD~V~VI~ 80 (193)
+.+++||.|.|+.
T Consensus 31 Lsf~~Gd~i~v~~ 43 (75)
T 2ege_A 31 LALRAGDVVMVYG 43 (75)
T ss_dssp CCBCTTCEEEEES
T ss_pred ceECCCCEEEEeE
Confidence 3489999999995
No 75
>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.56 E-value=30 Score=22.69 Aligned_cols=14 Identities=14% Similarity=0.309 Sum_probs=11.3
Q ss_pred cceeeCCEEEEeec
Q 029417 68 MHVKAGDTVKVIAG 81 (193)
Q Consensus 68 ~~IkkGD~V~VI~G 81 (193)
+.+++||.|.|+.-
T Consensus 26 Ls~~~Gd~i~v~~~ 39 (72)
T 2dl8_A 26 LSFKKGASLLLYQR 39 (72)
T ss_dssp CCBCTTCEEEEEEE
T ss_pred eccCCCCEEEEEee
Confidence 34899999999863
No 76
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.18 E-value=48 Score=24.82 Aligned_cols=28 Identities=25% Similarity=0.191 Sum_probs=20.9
Q ss_pred eeeCCEEEEeecCCC-CeeeEEEEEEccC
Q 029417 70 VKAGDTVKVIAGCDK-GKIGEITKVFRHN 97 (193)
Q Consensus 70 IkkGD~V~VI~GkdK-GK~GkV~~V~~~~ 97 (193)
|++||.|.|---.+- =..|.|+.+++..
T Consensus 54 I~~GD~VlVe~~~yd~~~kg~Iv~r~~~~ 82 (111)
T 2dgy_A 54 IKRGDFLIVDPIEEGEKVKAEISFVLCKD 82 (111)
T ss_dssp CCSSCEEEEEECSSCSSCCEEEEEECCHH
T ss_pred EcCCCEEEEEecccCCcceEEEEEEeCHH
Confidence 899999999765544 3458888887754
No 77
>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5
Probab=29.18 E-value=21 Score=26.52 Aligned_cols=44 Identities=16% Similarity=0.057 Sum_probs=30.8
Q ss_pred eEEecCCCHHHHHhhCCCCCCcccccceeeCCEEEEeecCCC-CeeeEEEEEEccC
Q 029417 43 CLIVVRLKRWERKECKPNSLPVLHKMHVKAGDTVKVIAGCDK-GKIGEITKVFRHN 97 (193)
Q Consensus 43 ~~~~~~l~k~lR~k~~~rs~p~~~k~~IkkGD~V~VI~GkdK-GK~GkV~~V~~~~ 97 (193)
.-.-++++--.|+. .+ |+.||.|.|---++- -..|.|+.++...
T Consensus 43 ~~~la~i~GKmRk~--Iw---------I~~GD~VlVe~~~yd~~~Kg~Iv~r~~~d 87 (102)
T 1jt8_A 43 KTRLGRIPGRLKNR--IW---------VREGDVVIVKPWEVQGDQKCDIIWRYTKT 87 (102)
T ss_dssp EEEEEECCHHHHHH--HC---------CCSCEEEEECCBCCTTSEEEEEEEESSCS
T ss_pred CEEEEEEcccceee--EE---------ecCCCEEEEEeccCCCCceEEEEEEeCHH
Confidence 34557778778872 33 889999999655544 4559998887654
No 78
>1whl_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=29.04 E-value=43 Score=24.21 Aligned_cols=27 Identities=19% Similarity=0.062 Sum_probs=19.8
Q ss_pred ceeeCCEEEEe-ecCCCCeeeEEEEEEc
Q 029417 69 HVKAGDTVKVI-AGCDKGKIGEITKVFR 95 (193)
Q Consensus 69 ~IkkGD~V~VI-~GkdKGK~GkV~~V~~ 95 (193)
.|..||+|.|. .|...+..|+|..|=+
T Consensus 7 ~~~VG~rV~V~~~~~~~~~~GtVryvG~ 34 (95)
T 1whl_A 7 GIDVGCPVKVQLRSGEEKFPGVVRFRGP 34 (95)
T ss_dssp CCCSSCEEEEECSSSSCEEEEEEEEECC
T ss_pred cCcCCCEEEEecCCCccceeEEEEEeCc
Confidence 37899999997 3433468898887754
No 79
>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin, C-CBL-associated protein, CAP, SH3 domain protein 5 SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dlm_A
Probab=28.94 E-value=36 Score=21.83 Aligned_cols=14 Identities=21% Similarity=0.420 Sum_probs=11.4
Q ss_pred cceeeCCEEEEeec
Q 029417 68 MHVKAGDTVKVIAG 81 (193)
Q Consensus 68 ~~IkkGD~V~VI~G 81 (193)
+.+++||.|.|+.-
T Consensus 24 Ls~~~Gd~i~v~~~ 37 (68)
T 2dl3_A 24 LPLQKGDIVYIYKQ 37 (68)
T ss_dssp CCBCTTCEEEEEEC
T ss_pred ccCCCCCEEEEeEe
Confidence 34899999999874
No 80
>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A
Probab=28.74 E-value=32 Score=21.37 Aligned_cols=15 Identities=27% Similarity=0.556 Sum_probs=11.8
Q ss_pred cceeeCCEEEEeecC
Q 029417 68 MHVKAGDTVKVIAGC 82 (193)
Q Consensus 68 ~~IkkGD~V~VI~Gk 82 (193)
+.+++||.|.|+.-.
T Consensus 19 Ls~~~Gd~i~v~~~~ 33 (58)
T 1zx6_A 19 LGLKPGDKVQLLEKL 33 (58)
T ss_dssp CCBCTTCEEEEEEEC
T ss_pred ccCCCCCEEEEEEec
Confidence 348999999998643
No 81
>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding, cell adhesion, cytoskeleton, LIPO magnesium, manganese, metal-binding, myristate; 1.40A {Homo sapiens} PDB: 3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A 1bbz_A 1awo_A
Probab=28.62 E-value=32 Score=21.50 Aligned_cols=13 Identities=15% Similarity=0.667 Sum_probs=11.1
Q ss_pred cceeeCCEEEEee
Q 029417 68 MHVKAGDTVKVIA 80 (193)
Q Consensus 68 ~~IkkGD~V~VI~ 80 (193)
+.+++||.|.|+.
T Consensus 22 Ls~~~Gd~i~v~~ 34 (63)
T 3eg3_A 22 LSITKGEKLRVLG 34 (63)
T ss_dssp CCBCTTCEEEEEE
T ss_pred cCCCCCCEEEEEE
Confidence 4489999999997
No 82
>3r8s_P 50S ribosomal protein L19; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_N 1p86_N 2awb_P 2gya_N 2gyc_N 2aw4_P 2i2v_P 2j28_P 2i2t_P* 2qao_P* 2qba_P* 2qbc_P* 2qbe_P 2qbg_P 2qbi_P* 2qbk_P* 2qov_P 2qox_P 2qoz_P* 2qp1_P* ...
Probab=28.58 E-value=1.9e+02 Score=21.83 Aligned_cols=67 Identities=25% Similarity=0.306 Sum_probs=37.2
Q ss_pred HHHhhCCCCCCcccccceeeCCEEEEee----cCCCC----eeeEEEEEEccC--CEEEEeceeeeeeeecCCcccCCce
Q 029417 53 ERKECKPNSLPVLHKMHVKAGDTVKVIA----GCDKG----KIGEITKVFRHN--STVMVKDINLKTKHVKKREEEEQGQ 122 (193)
Q Consensus 53 lR~k~~~rs~p~~~k~~IkkGD~V~VI~----GkdKG----K~GkV~~V~~~~--n~ViVEGvN~~kkhvK~~~~~~~Gg 122 (193)
+-+++-...+| .++.||+|.|-. | +|. -+|.|+++.... .+.+|..+ ..|-
T Consensus 7 ~e~~~~~~~iP-----~f~~GDtv~V~~~i~EG-~keRiQ~F~GvvI~~~~~G~~~tftvRki-------------~~gv 67 (114)
T 3r8s_P 7 LEQEQMKQDVP-----SFRPGDTVEVKVWVVEG-SKKRLQAFEGVVIAIRNRGLHSAFTVRKI-------------SNGE 67 (114)
T ss_dssp HHGGGCCSCCC-----CCCTTCEEEEEEEEEET-TEEEEEEEEEEEEEEECCGGGCEEEEEEE-------------ETTE
T ss_pred HHHHHhccCCC-----ccCCCCEEEEEEEEecC-CceeeeeEEEEEEEEECCCCCeEEEEEEe-------------cCCc
Confidence 33444456677 489999999853 3 222 247776665432 12333322 1233
Q ss_pred eEEEeecCcCCCeeee
Q 029417 123 IIKIEAPIHSSNVMLY 138 (193)
Q Consensus 123 Ii~~E~PIh~SNV~Lv 138 (193)
=++.-.|+|.-+|.=+
T Consensus 68 GVEr~fpl~SP~I~~I 83 (114)
T 3r8s_P 68 GVERVFQTHSPVVDSI 83 (114)
T ss_dssp EEEEEEETTCTTEEEE
T ss_pred cEEEEEecCCCccceE
Confidence 3577789997665543
No 83
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II}
Probab=28.52 E-value=47 Score=24.82 Aligned_cols=43 Identities=21% Similarity=0.152 Sum_probs=29.9
Q ss_pred EEecCCCHHHHHhhCCCCCCcccccceeeCCEEEEeecCCCCeeeEEEEEEccC
Q 029417 44 LIVVRLKRWERKECKPNSLPVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHN 97 (193)
Q Consensus 44 ~~~~~l~k~lR~k~~~rs~p~~~k~~IkkGD~V~VI~GkdKGK~GkV~~V~~~~ 97 (193)
..-+.++--+|+ + .+ |..||.|.|---++-...|.|+.+++..
T Consensus 56 ~~l~~i~GK~Rk-~-I~---------i~~GD~V~ve~~~~~~~kG~I~~~~~r~ 98 (117)
T 2oqk_A 56 KRLCHIRGKMRK-K-VW---------VNPGDIVLVSLRDFQDSKGDIILKYTPD 98 (117)
T ss_dssp EEEEECCHHHHH-H-SC---------CCTTCEEEEEECTTCTTEEEEEEECCHH
T ss_pred EEEEEEcCceec-C-Cc---------CCCCCEEEEEEEcCCCCeEEEEEEechH
Confidence 455777777777 2 33 5699999997554444578999888754
No 84
>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.47 E-value=33 Score=22.79 Aligned_cols=14 Identities=14% Similarity=0.458 Sum_probs=11.4
Q ss_pred cceeeCCEEEEeec
Q 029417 68 MHVKAGDTVKVIAG 81 (193)
Q Consensus 68 ~~IkkGD~V~VI~G 81 (193)
+.+++||.|.|+.-
T Consensus 27 Ls~~~Gd~i~v~~~ 40 (76)
T 2epd_A 27 LSFRRGDVLRLHER 40 (76)
T ss_dssp CEECTTCEEEEEEE
T ss_pred cCCCCCCEEEEEEe
Confidence 44899999999864
No 85
>1vhy_A Hypothetical protein HI0303; PSI, protein structure initiative, NEW YORK SGX research CEN structural genomics, nysgxrc; HET: MSE; 1.90A {Haemophilus influenzae} SCOP: b.122.1.2 c.116.1.5 PDB: 1nxz_A
Probab=28.05 E-value=44 Score=27.94 Aligned_cols=49 Identities=12% Similarity=0.176 Sum_probs=32.1
Q ss_pred CCCHHHHHhhCCCCCCcccccceeeCCEEEEeecCCCCeeeEEEEEEccCCEEEEe
Q 029417 48 RLKRWERKECKPNSLPVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVK 103 (193)
Q Consensus 48 ~l~k~lR~k~~~rs~p~~~k~~IkkGD~V~VI~GkdKGK~GkV~~V~~~~n~ViVE 103 (193)
.|+.++-.=+ .+-+. ++.||.|.|.-|...--.++|..+.++.-.+.|.
T Consensus 21 ~L~~~~~~Hl-~~VLR------l~~Gd~v~l~dg~g~~~~a~I~~~~~~~~~~~i~ 69 (257)
T 1vhy_A 21 YLSEDAANHV-ARVLR------MTEGEQLELFDGSNHIYPAKIIESNKKSVKVEIL 69 (257)
T ss_dssp ECCHHHHHHH-HTTSC------CCTTCEEEEECSSSEEEEEEEEEECSSCEEEEEC
T ss_pred EeCHHHHHHH-HHHhc------cCCCCEEEEEcCCCCEEEEEEEEeeCCeEEEEEE
Confidence 4666554433 34555 8899999999886444568898887765444443
No 86
>3bbo_G Ribosomal protein L4; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=27.96 E-value=13 Score=32.65 Aligned_cols=25 Identities=40% Similarity=0.344 Sum_probs=0.0
Q ss_pred hhhhhhhccccccccccccccccCC
Q 029417 4 MAALQSSMTSLSISSNSFFGQRLSF 28 (193)
Q Consensus 4 ~~~~~~~~~~l~~~~~~~~~~~~~~ 28 (193)
||+-.++..+||+.++|+|..+-+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~ 25 (293)
T 3bbo_G 1 MATSTSSSLSLSFFSSSLFSSKSRN 25 (293)
T ss_dssp -------------------------
T ss_pred CCccccCcceeeeeeccccccCccc
Confidence 4445667788888777777665543
No 87
>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP: b.34.2.1
Probab=27.90 E-value=38 Score=21.96 Aligned_cols=13 Identities=23% Similarity=0.524 Sum_probs=11.1
Q ss_pred cceeeCCEEEEee
Q 029417 68 MHVKAGDTVKVIA 80 (193)
Q Consensus 68 ~~IkkGD~V~VI~ 80 (193)
+.+++||.|.|+.
T Consensus 28 Ls~~~Gd~i~v~~ 40 (71)
T 1csk_A 28 LPFCKGDVLTIVA 40 (71)
T ss_dssp CCBCTTCEEEEEE
T ss_pred CCCCCCCEEEEeE
Confidence 3489999999998
No 88
>4e8b_A Ribosomal RNA small subunit methyltransferase E; 16S rRNA methyltransferase; 2.25A {Escherichia coli}
Probab=27.69 E-value=47 Score=27.62 Aligned_cols=48 Identities=17% Similarity=0.171 Sum_probs=31.9
Q ss_pred cCCCHHHHHhhCCCCCCcccccceeeCCEEEEeecCCCCeeeEEEEEEccCCEEE
Q 029417 47 VRLKRWERKECKPNSLPVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVM 101 (193)
Q Consensus 47 ~~l~k~lR~k~~~rs~p~~~k~~IkkGD~V~VI~GkdKGK~GkV~~V~~~~n~Vi 101 (193)
..|+.+.-. |=.+-+. ++.||.|.|.-|...=-.++|..+.++.-.+.
T Consensus 18 i~L~~~~~~-Hl~~VLR------~~~Gd~v~l~dg~g~~~~a~I~~i~~~~~~~~ 65 (251)
T 4e8b_A 18 IALCEDAAN-HIGRVLR------MGPGQALQLFDGSNQVFDAEITSASKKSVEVK 65 (251)
T ss_dssp EECCHHHHH-HHHTTSC------CCSCCEEEEECSSSEEEEEEEEEECSSCEEEE
T ss_pred EEeCHHHHH-HHHHhCc------CCCCCEEEEEeCCCcEEEEEEEEeecceEEEE
Confidence 346655443 3234455 88999999999875545689998877654443
No 89
>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*
Probab=27.58 E-value=42 Score=28.10 Aligned_cols=21 Identities=24% Similarity=0.417 Sum_probs=17.5
Q ss_pred eeeCCEEEEeecCCCCeeeEEEEEEc
Q 029417 70 VKAGDTVKVIAGCDKGKIGEITKVFR 95 (193)
Q Consensus 70 IkkGD~V~VI~GkdKGK~GkV~~V~~ 95 (193)
++.||.|++ .|..|+|.+|.-
T Consensus 129 f~vGD~I~i-----~~~~G~V~~I~l 149 (285)
T 3udc_A 129 FSVGDYVTI-----NGISGTVEEIGL 149 (285)
T ss_dssp CCTTCEEEE-----TTEEEEEEEECS
T ss_pred ccCCCEEEE-----CCEEEEEEEeee
Confidence 899999999 378899988753
No 90
>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1
Probab=27.49 E-value=57 Score=21.54 Aligned_cols=15 Identities=20% Similarity=0.443 Sum_probs=12.3
Q ss_pred cceeeCCEEEEeecC
Q 029417 68 MHVKAGDTVKVIAGC 82 (193)
Q Consensus 68 ~~IkkGD~V~VI~Gk 82 (193)
+.+++||.|.|+.-.
T Consensus 35 Lsf~~Gd~i~v~~~~ 49 (78)
T 1k1z_A 35 LRLNPGDIVELTKAE 49 (78)
T ss_dssp CCBCTTCEEEEEECC
T ss_pred cCCCCCCEEEEEEcC
Confidence 448999999999863
No 91
>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.46 E-value=58 Score=21.61 Aligned_cols=17 Identities=35% Similarity=0.675 Sum_probs=13.0
Q ss_pred ccceeeCCEEEEeecCC
Q 029417 67 KMHVKAGDTVKVIAGCD 83 (193)
Q Consensus 67 k~~IkkGD~V~VI~Gkd 83 (193)
.+.+++||.|.|+.-.+
T Consensus 33 eLsf~~Gd~i~v~~~~~ 49 (80)
T 2d8h_A 33 DLNFQAGDRITVISKTD 49 (80)
T ss_dssp BCEECTTCEEEEEECCS
T ss_pred eeeEcCCCEEEEeECcC
Confidence 34489999999997543
No 92
>2glw_A PHS018, 92AA long hypothetical protein; RIFT barrel, bioinformatics, transcription; NMR {Pyrococcus horikoshii}
Probab=27.12 E-value=41 Score=24.16 Aligned_cols=22 Identities=18% Similarity=0.341 Sum_probs=17.8
Q ss_pred CCCHHHHHhhCCCCCCcccccceeeCCEEEEee
Q 029417 48 RLKRWERKECKPNSLPVLHKMHVKAGDTVKVIA 80 (193)
Q Consensus 48 ~l~k~lR~k~~~rs~p~~~k~~IkkGD~V~VI~ 80 (193)
-+.+++|+.++ |..||.|.++.
T Consensus 63 tIPkeiR~~lg-----------i~~Gd~l~~~~ 84 (92)
T 2glw_A 63 IIPKALRDVIG-----------IKPGEVIEVLL 84 (92)
T ss_dssp ECCHHHHHHHT-----------CCTTCEEEEEE
T ss_pred ECcHHHHHHcC-----------CCCCCEEEEEE
Confidence 36789999996 57999998863
No 93
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=26.98 E-value=78 Score=21.21 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=18.9
Q ss_pred eeeCCEEEEeecCCCCeeeEEEEEEccCCEEEEe
Q 029417 70 VKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVK 103 (193)
Q Consensus 70 IkkGD~V~VI~GkdKGK~GkV~~V~~~~n~ViVE 103 (193)
++.||+|.| +|++|+.+++++.+.
T Consensus 46 ~~~Gd~V~v----------~V~~vd~~~~~i~ls 69 (80)
T 2k52_A 46 LNVGDEIIV----------QAIDVRPEKREIDFK 69 (80)
T ss_dssp CCTTCEEEE----------EEEEEETTTTEEEEE
T ss_pred eCCCCEEEE----------EEEEEECCCCEEEEE
Confidence 789999987 688888877777654
No 94
>1w1f_A Tyrosine-protein kinase LYN; SH3-domain, SH3 domain, tyrosine kinase, signal transduction; NMR {Homo sapiens} PDB: 1wa7_A
Probab=26.96 E-value=44 Score=21.11 Aligned_cols=14 Identities=29% Similarity=0.598 Sum_probs=11.2
Q ss_pred cceeeCCEEEEeec
Q 029417 68 MHVKAGDTVKVIAG 81 (193)
Q Consensus 68 ~~IkkGD~V~VI~G 81 (193)
+.+++||.|.|+.-
T Consensus 24 Ls~~~Gd~i~v~~~ 37 (65)
T 1w1f_A 24 LSFKKGEKMKVLEE 37 (65)
T ss_dssp CCBCTTCEEEEEEE
T ss_pred CCCCCCCEEEEEEc
Confidence 33899999999874
No 95
>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine nucleotide exchange factor (GEF) 9, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.70 E-value=39 Score=22.63 Aligned_cols=14 Identities=43% Similarity=0.755 Sum_probs=11.5
Q ss_pred cceeeCCEEEEeec
Q 029417 68 MHVKAGDTVKVIAG 81 (193)
Q Consensus 68 ~~IkkGD~V~VI~G 81 (193)
+.+++||.|.|+.-
T Consensus 27 Ls~~~Gd~i~v~~~ 40 (81)
T 2ysq_A 27 LAFKAGDVIKVLDA 40 (81)
T ss_dssp CCCCTTCEEEEEEC
T ss_pred CCCCCCCEEEEEEE
Confidence 33899999999974
No 96
>3iz5_a 60S ribosomal protein L27 (L27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_a
Probab=26.63 E-value=3 Score=32.91 Aligned_cols=39 Identities=23% Similarity=0.399 Sum_probs=32.2
Q ss_pred eeeCCEEEEeecCCCCeeeEEEEEEccC------CEEEEeceeee
Q 029417 70 VKAGDTVKVIAGCDKGKIGEITKVFRHN------STVMVKDINLK 108 (193)
Q Consensus 70 IkkGD~V~VI~GkdKGK~GkV~~V~~~~------n~ViVEGvN~~ 108 (193)
+++|-.|.|++|.+.|+...|++.+.+. +.++|-|+...
T Consensus 5 ~kpGkVvivl~GryaGkKaVivk~~d~gt~drpy~halVaGIdry 49 (136)
T 3iz5_a 5 LKPGKAVILLQGRFAGRKAVIVRVFEEGTRDRPYGHCLVAGLAKY 49 (136)
T ss_dssp CCCCCSCCCCCSSSSCCCCBCSCCSSSSSCSCSSCCSCCBCCSTT
T ss_pred ccCCEEEEEeccccCCcEEEEEEecCCCCCCCccceEEEEeeccC
Confidence 6889999999999999999998887554 26888887653
No 97
>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A
Probab=26.36 E-value=68 Score=20.55 Aligned_cols=14 Identities=21% Similarity=0.546 Sum_probs=11.8
Q ss_pred cceeeCCEEEEeec
Q 029417 68 MHVKAGDTVKVIAG 81 (193)
Q Consensus 68 ~~IkkGD~V~VI~G 81 (193)
+.+++||.|.|+.-
T Consensus 27 Lsf~~Gd~i~v~~~ 40 (70)
T 1gcq_C 27 LRLNPGDIVELTKA 40 (70)
T ss_dssp CCBCTTCEEEEEEC
T ss_pred CCcCCCCEEEEEeC
Confidence 34899999999986
No 98
>2zzd_A Thiocyanate hydrolase subunit alpha; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dd4_A 2dxb_A 2dd5_A* 2dxc_A*
Probab=26.27 E-value=48 Score=25.65 Aligned_cols=26 Identities=23% Similarity=0.455 Sum_probs=20.1
Q ss_pred ceeeCCEEEEeecC----------CCCeeeEEEEEE
Q 029417 69 HVKAGDTVKVIAGC----------DKGKIGEITKVF 94 (193)
Q Consensus 69 ~IkkGD~V~VI~Gk----------dKGK~GkV~~V~ 94 (193)
.+..||+|.|..-. -+||+|+|..+.
T Consensus 36 rF~vGDrVrvr~~~p~gHtRlP~YvRGk~G~I~~~~ 71 (126)
T 2zzd_A 36 KFNVGDRVRIKDLPDLFYTRTMTYTRGATGTIVRLV 71 (126)
T ss_dssp SSCTTCEEEECCCCCSSCCSSCGGGTTCEEEEEEEE
T ss_pred ccCCCCEEEEccCCCCCceeccHHhCCCEEEEEEEe
Confidence 47899999998543 468999997765
No 99
>3izc_U 60S ribosomal protein RPL21 (L21E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_U 3o58_T 3o5h_T 3u5e_T 3u5i_T 4b6a_T
Probab=26.00 E-value=54 Score=26.32 Aligned_cols=34 Identities=32% Similarity=0.492 Sum_probs=23.9
Q ss_pred ceeeCCEEEEee-c---------CCCCeeeEEEEEEccCCEEEE
Q 029417 69 HVKAGDTVKVIA-G---------CDKGKIGEITKVFRHNSTVMV 102 (193)
Q Consensus 69 ~IkkGD~V~VI~-G---------kdKGK~GkV~~V~~~~n~ViV 102 (193)
..++||.|-|.. | .|-|++|.|..|....-.|+|
T Consensus 33 ~yk~GD~VdIk~~gsVqKGmPHk~YHGkTGrV~nvtq~AvgiiV 76 (160)
T 3izc_U 33 VYKVGDIVDIKANGSIQKGMPHKFYQGKTGVVYNVTKSSVGVII 76 (160)
T ss_dssp CCCTTCEEEECCCTTCCSSCCCGGGTTCEEEEEEECSSSEEEEE
T ss_pred HhcCCCEEEEeccCccCCCCCCcccCCCCeEEEeeCCcEEEEEE
Confidence 467999998863 2 266999999887665434444
No 100
>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein; 2.05A {Homo sapiens} PDB: 2k6d_A
Probab=25.66 E-value=38 Score=22.28 Aligned_cols=14 Identities=36% Similarity=0.653 Sum_probs=11.4
Q ss_pred cceeeCCEEEEeec
Q 029417 68 MHVKAGDTVKVIAG 81 (193)
Q Consensus 68 ~~IkkGD~V~VI~G 81 (193)
+.+++||.|.|+.-
T Consensus 19 Ls~~~Gd~i~vl~~ 32 (69)
T 2ydl_A 19 LTIKEGDIVTLINK 32 (69)
T ss_dssp CCBCTTCEEEEEES
T ss_pred cccCCCCEEEEEEc
Confidence 34899999999964
No 101
>3tee_A Flagella basal BODY P-ring formation protein FLGA; chaperone, flagellar P-ring formation, flagellar FLGI protei periplasmic protein; 1.95A {Salmonella typhimurium}
Probab=25.22 E-value=45 Score=27.39 Aligned_cols=36 Identities=28% Similarity=0.404 Sum_probs=24.9
Q ss_pred cceeeCCEEEEeecC------------CCCeeeEEEEEEccCCEEEEec
Q 029417 68 MHVKAGDTVKVIAGC------------DKGKIGEITKVFRHNSTVMVKD 104 (193)
Q Consensus 68 ~~IkkGD~V~VI~Gk------------dKGK~GkV~~V~~~~n~ViVEG 104 (193)
|-|++||.|.|+... +-|..|..++|....++ +|.|
T Consensus 139 ~lV~rG~~V~i~~~~~g~~i~~~G~AL~~G~~Gd~IrVr~~Sgk-iv~g 186 (219)
T 3tee_A 139 WRVKAGQRVQVIANGEGFSVNAEGQAMNNAAVAQNARVRMTSGQ-IVSG 186 (219)
T ss_dssp CSBCTTCEEEEEEECSSCEEEEEEEECSCBCTTSEEEEEETTSC-EEEE
T ss_pred cEEcCCCEEEEEEecCCEEEEEEEEEccccCCCCEEEEECCCCC-EEEE
Confidence 558999999998643 45777777777654444 3444
No 102
>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae}
Probab=24.96 E-value=45 Score=22.09 Aligned_cols=14 Identities=21% Similarity=0.325 Sum_probs=11.2
Q ss_pred cceeeCCEEEEeec
Q 029417 68 MHVKAGDTVKVIAG 81 (193)
Q Consensus 68 ~~IkkGD~V~VI~G 81 (193)
+.+++||.|.|+.-
T Consensus 22 Ls~~~Gd~i~v~~~ 35 (73)
T 2lcs_A 22 LRLAEGDIVFISYK 35 (73)
T ss_dssp CCBCTTCEEEEEEE
T ss_pred cCCcCCCEEEEEEE
Confidence 34899999999864
No 103
>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=24.91 E-value=45 Score=21.62 Aligned_cols=13 Identities=15% Similarity=0.399 Sum_probs=10.8
Q ss_pred cceeeCCEEEEee
Q 029417 68 MHVKAGDTVKVIA 80 (193)
Q Consensus 68 ~~IkkGD~V~VI~ 80 (193)
+.+++||.|.|+.
T Consensus 25 Ls~~~Gd~i~v~~ 37 (69)
T 1uhf_A 25 LTFTEGEEILVTQ 37 (69)
T ss_dssp CCBCTTCEEEECE
T ss_pred cCCCCCCEEEEEE
Confidence 4489999999986
No 104
>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor protein, downregulation, CBL, apoptosis, junction, cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}
Probab=24.80 E-value=41 Score=21.93 Aligned_cols=14 Identities=36% Similarity=0.653 Sum_probs=11.6
Q ss_pred cceeeCCEEEEeec
Q 029417 68 MHVKAGDTVKVIAG 81 (193)
Q Consensus 68 ~~IkkGD~V~VI~G 81 (193)
+.+++||.|.|+.-
T Consensus 26 Ls~~~Gd~i~v~~~ 39 (73)
T 2k9g_A 26 LTIKEGDIVTLINK 39 (73)
T ss_dssp CCBCTTCEEEEEEC
T ss_pred eeECCCCEEEEEEC
Confidence 34899999999975
No 105
>1vhk_A Hypothetical protein YQEU; structural genomics, unknown function; 2.60A {Bacillus subtilis} SCOP: b.122.1.2 c.116.1.5
Probab=24.56 E-value=58 Score=27.36 Aligned_cols=28 Identities=14% Similarity=0.157 Sum_probs=22.6
Q ss_pred eeeCCEEEEeecCCCCeeeEEEEEEccC
Q 029417 70 VKAGDTVKVIAGCDKGKIGEITKVFRHN 97 (193)
Q Consensus 70 IkkGD~V~VI~GkdKGK~GkV~~V~~~~ 97 (193)
++.||.|.|.-|...=-.++|..+.++.
T Consensus 37 l~~Gd~i~l~dg~G~~~~a~I~~~~~~~ 64 (268)
T 1vhk_A 37 MNEGDQIICCSQDGFEAKCELQSVSKDK 64 (268)
T ss_dssp CCTTCEEEEECTTSCEEEEEEEEECSSE
T ss_pred CCCCCEEEEEeCCCCEEEEEEEEecCCE
Confidence 8899999999887655668888887654
No 106
>3kw2_A Probable R-RNA methyltransferase; structural genomics, unknown function, PSI-2, protein structure initiative; HET: MSE ADN; 2.00A {Porphyromonas gingivalis atcc 33277}
Probab=24.41 E-value=54 Score=27.44 Aligned_cols=49 Identities=24% Similarity=0.161 Sum_probs=31.6
Q ss_pred cCCCHHHHHhhCCCCCCcccccceeeCCEEEEeecCCCCeeeEEEEEEccCCEEEE
Q 029417 47 VRLKRWERKECKPNSLPVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMV 102 (193)
Q Consensus 47 ~~l~k~lR~k~~~rs~p~~~k~~IkkGD~V~VI~GkdKGK~GkV~~V~~~~n~ViV 102 (193)
..|+.+.-.=. .+-+. ++.||.|.+.-|...--.++|..+.++.-.+.|
T Consensus 17 ~~L~~~~~~Hl-~~VLR------l~~Gd~v~l~dg~g~~~~a~I~~i~~~~~~~~i 65 (257)
T 3kw2_A 17 DRLPDDEAGHI-LRVLR------MQAGDRLRLTDGRGSFFDAVIETADRKSCYVSV 65 (257)
T ss_dssp SBCCHHHHHHH-HTTSC------CCTTCEEEEECSBSEEEEEEEEEECSSCEEEEE
T ss_pred EEeCHHHHHHH-HHhcc------CCCCCEEEEEECCCCEEEEEEEEeeCCEEEEEE
Confidence 44665544432 34555 889999999998743346888888776533333
No 107
>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate repeat-containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2kea_A
Probab=24.14 E-value=61 Score=21.35 Aligned_cols=16 Identities=25% Similarity=0.534 Sum_probs=12.4
Q ss_pred cceeeCCEEEEeecCC
Q 029417 68 MHVKAGDTVKVIAGCD 83 (193)
Q Consensus 68 ~~IkkGD~V~VI~Gkd 83 (193)
+.+++||.|.|+.-.+
T Consensus 28 Ls~~~Gd~i~v~~~~~ 43 (73)
T 2ebp_A 28 LKLKKGDIIDIISKPP 43 (73)
T ss_dssp CCBCSSCEEEEEECCS
T ss_pred cCCCCCCEEEEEEeCC
Confidence 3489999999997533
No 108
>1z85_A Hypothetical protein TM1380; alpha/beta knot fold, structural genomics, joint center for structural genomics, JCSG; 2.12A {Thermotoga maritima}
Probab=24.05 E-value=56 Score=27.06 Aligned_cols=47 Identities=11% Similarity=0.182 Sum_probs=31.7
Q ss_pred CCCHHHHHhhCCCCCCcccccceeeCCEEEEeecCCCCeeeEEEEEEccCCEEEE
Q 029417 48 RLKRWERKECKPNSLPVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMV 102 (193)
Q Consensus 48 ~l~k~lR~k~~~rs~p~~~k~~IkkGD~V~VI~GkdKGK~GkV~~V~~~~n~ViV 102 (193)
.|+.++-.=+ +-+. ++.||.|.|.-|...--.++|..+.++.-.+.|
T Consensus 27 ~L~~~~~~Hl--~VLR------l~~Gd~v~l~dg~G~~~~a~I~~~~~~~~~~~i 73 (234)
T 1z85_A 27 IFDEREAHHM--RVVR------LKEGDVIEATDGNGFSYTCILKSLKKKTAAAKI 73 (234)
T ss_dssp EECHHHHHHH--HHTT------CCTTCEEEEECSBSEEEEEEEEEECSSCEEEEE
T ss_pred EeCHHHHHHH--Hhhc------CCCCCEEEEEeCCCCEEEEEEEEecCCEEEEEE
Confidence 3555555433 5555 899999999988755556788888776544433
No 109
>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae}
Probab=23.91 E-value=49 Score=20.38 Aligned_cols=14 Identities=21% Similarity=0.325 Sum_probs=11.1
Q ss_pred cceeeCCEEEEeec
Q 029417 68 MHVKAGDTVKVIAG 81 (193)
Q Consensus 68 ~~IkkGD~V~VI~G 81 (193)
+.+++||.|.|+.-
T Consensus 18 Ls~~~Gd~i~v~~~ 31 (59)
T 1yn8_A 18 LRLAEGDIVFISYK 31 (59)
T ss_dssp CCBCTTCEEEEEEE
T ss_pred cCCCCCCEEEEEEc
Confidence 34899999999863
No 110
>3j21_R 50S ribosomal protein L21E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=23.72 E-value=80 Score=23.25 Aligned_cols=34 Identities=15% Similarity=0.239 Sum_probs=24.3
Q ss_pred ceeeCCEEEEee-c---------CCCCeeeEEEEEEccCCEEEE
Q 029417 69 HVKAGDTVKVIA-G---------CDKGKIGEITKVFRHNSTVMV 102 (193)
Q Consensus 69 ~IkkGD~V~VI~-G---------kdKGK~GkV~~V~~~~n~ViV 102 (193)
..++||.|-|.- | .+-||+|.|..|...--.|+|
T Consensus 34 ~yk~Gd~VdIk~~gsvqKGmPhk~yHGkTG~V~~vt~~Avgv~V 77 (97)
T 3j21_R 34 EFEVGQRVHIVIEPSYHKGMPDPRFHGRTGTVVGKRGEAYIVEI 77 (97)
T ss_dssp CCCTTCEEEECCCTTCCSSCCCGGGTTCEEEEEEEETTEEEEEE
T ss_pred HhcCCCEEEEEecCceEcCCCCcccCCCCeEEEeecCcEEEEEE
Confidence 357999998853 2 266999999888776544444
No 111
>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.47 E-value=45 Score=21.79 Aligned_cols=14 Identities=7% Similarity=0.432 Sum_probs=11.6
Q ss_pred cceeeCCEEEEeec
Q 029417 68 MHVKAGDTVKVIAG 81 (193)
Q Consensus 68 ~~IkkGD~V~VI~G 81 (193)
+.+++||.|.|+.-
T Consensus 25 Lsf~~Gd~i~v~~~ 38 (73)
T 2dl7_A 25 LSFPEGAIIRILNK 38 (73)
T ss_dssp CCBCTTCEEEEEEC
T ss_pred CCCCCCCEEEEEEC
Confidence 34899999999974
No 112
>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3 domain, PEST phosphatase-interacting protein 1, CD2- binding protein 1; NMR {Homo sapiens}
Probab=23.02 E-value=46 Score=21.38 Aligned_cols=14 Identities=36% Similarity=0.634 Sum_probs=11.5
Q ss_pred cceeeCCEEEEeec
Q 029417 68 MHVKAGDTVKVIAG 81 (193)
Q Consensus 68 ~~IkkGD~V~VI~G 81 (193)
+.+++||.|.|+.-
T Consensus 25 Ls~~~Gd~i~v~~~ 38 (69)
T 2dil_A 25 LDLSAGDILEVILE 38 (69)
T ss_dssp CCBCTTCEEEEEEC
T ss_pred cCCCCCCEEEEEEC
Confidence 34899999999974
No 113
>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.78 E-value=40 Score=21.75 Aligned_cols=14 Identities=29% Similarity=0.460 Sum_probs=11.2
Q ss_pred cceeeCCEEEEeec
Q 029417 68 MHVKAGDTVKVIAG 81 (193)
Q Consensus 68 ~~IkkGD~V~VI~G 81 (193)
+.+++||.|.|+.-
T Consensus 24 Ls~~~Gd~i~v~~~ 37 (68)
T 2dmo_A 24 LQVMPGNIVFVLKK 37 (68)
T ss_dssp CCCCTTCEEEECEE
T ss_pred CCCCCCCEEEEEEe
Confidence 33899999999863
No 114
>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P, import machine, SH3 domain, protein transport; NMR {Saccharomyces cerevisiae} SCOP: b.34.2.1
Probab=22.53 E-value=80 Score=20.99 Aligned_cols=14 Identities=21% Similarity=0.432 Sum_probs=11.4
Q ss_pred ceeeCCEEEEeecC
Q 029417 69 HVKAGDTVKVIAGC 82 (193)
Q Consensus 69 ~IkkGD~V~VI~Gk 82 (193)
.+++||.|.|+.=.
T Consensus 26 sf~~Gd~i~Vl~~~ 39 (69)
T 1nm7_A 26 ALKKGDLMAILSKK 39 (69)
T ss_dssp CCCTTCEEEECCSS
T ss_pred CCCCCCEEEEEecC
Confidence 38999999999744
No 115
>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.30 E-value=92 Score=20.46 Aligned_cols=15 Identities=20% Similarity=0.386 Sum_probs=11.9
Q ss_pred cceeeCCEEEEeecC
Q 029417 68 MHVKAGDTVKVIAGC 82 (193)
Q Consensus 68 ~~IkkGD~V~VI~Gk 82 (193)
+.+++||.|.|+.-.
T Consensus 31 Lsf~~Gd~i~v~~~~ 45 (76)
T 2csi_A 31 LTFCTGDIITVFGEI 45 (76)
T ss_dssp CCCCTTCEEEEESSC
T ss_pred ccCCCCCEEEEeEec
Confidence 348999999999743
No 116
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=22.23 E-value=1.6e+02 Score=19.24 Aligned_cols=36 Identities=22% Similarity=0.219 Sum_probs=25.5
Q ss_pred cceeeCCEEEEeecCC-CCeeeEEEEEEccCCEEEEe
Q 029417 68 MHVKAGDTVKVIAGCD-KGKIGEITKVFRHNSTVMVK 103 (193)
Q Consensus 68 ~~IkkGD~V~VI~Gkd-KGK~GkV~~V~~~~n~ViVE 103 (193)
...++||.|...=-.| +=-.++|++|..+.+.+.|.
T Consensus 7 ~~~~vGd~c~A~~s~Dg~wYrA~I~~v~~~~~~~~V~ 43 (64)
T 4a4f_A 7 HSWKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAIT 43 (64)
T ss_dssp SCCCTTCEEEEECTTTSSEEEEEEEEEETTTTEEEEE
T ss_pred CCCCCCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEE
Confidence 3468999999885333 23469999999876665554
No 117
>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A 4hck_A 5hck_A
Probab=22.08 E-value=44 Score=22.42 Aligned_cols=14 Identities=21% Similarity=0.487 Sum_probs=11.4
Q ss_pred cceeeCCEEEEeec
Q 029417 68 MHVKAGDTVKVIAG 81 (193)
Q Consensus 68 ~~IkkGD~V~VI~G 81 (193)
+.+++||.|.|+.-
T Consensus 42 Ls~~~Gd~i~v~~~ 55 (86)
T 2oi3_A 42 LSFQKGDQMVVLEE 55 (86)
T ss_dssp CCCCTTCEEEEEEE
T ss_pred CcCCCCCEEEEEEc
Confidence 44899999999864
No 118
>3gqh_A Preneck appendage protein; beta barrel, viral protein; 1.80A {Bacillus phage PHI29} PDB: 3gqk_A*
Probab=21.98 E-value=26 Score=28.29 Aligned_cols=33 Identities=18% Similarity=0.117 Sum_probs=26.2
Q ss_pred eeecCCCCeeeEEEEEccCCcEEEEEcccCccc
Q 029417 137 LYSKEMEVASRVGHKVLDDGTRVRYLIKTGEII 169 (193)
Q Consensus 137 Lv~p~~~kptRVg~r~~edGkKvRv~kksg~~I 169 (193)
++.-.+|.|.++||-++-+|.|+|.+.....+|
T Consensus 5 ~FEs~dG~~I~~Gy~Vtl~g~KIR~A~~~D~il 37 (163)
T 3gqh_A 5 YFESLGGQVIETGYLVTLEKGKIRKAEKGEKII 37 (163)
T ss_dssp EEEBTTSSCCCTTCEEEEETTEEEECCTTCCCC
T ss_pred heeccCCCcccCCeEEEecCCEEEecCCCCcEE
Confidence 345567889999988888899999998766654
No 119
>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=21.94 E-value=76 Score=20.98 Aligned_cols=15 Identities=20% Similarity=0.286 Sum_probs=12.0
Q ss_pred cceeeCCEEEEeecC
Q 029417 68 MHVKAGDTVKVIAGC 82 (193)
Q Consensus 68 ~~IkkGD~V~VI~Gk 82 (193)
+.+++||.|.|+.=.
T Consensus 30 Ls~~~Gd~i~vl~~~ 44 (79)
T 1uhc_A 30 LSVSANQKLKILEFK 44 (79)
T ss_dssp CCBCTTCEEEEEESC
T ss_pred cCCCCCCEEEEEECC
Confidence 348999999999744
No 120
>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein 2A, endophilin 1, EEN-B1, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A
Probab=21.82 E-value=33 Score=22.46 Aligned_cols=16 Identities=25% Similarity=0.461 Sum_probs=12.4
Q ss_pred cceeeCCEEEEeecCC
Q 029417 68 MHVKAGDTVKVIAGCD 83 (193)
Q Consensus 68 ~~IkkGD~V~VI~Gkd 83 (193)
+.+++||.|.|+.-.+
T Consensus 24 Ls~~~Gd~i~v~~~~~ 39 (73)
T 2dbm_A 24 LGFKEGDIITLTNQID 39 (73)
T ss_dssp CCBCTTCEEECCBCSS
T ss_pred ccCCCCCEEEEEEecC
Confidence 3489999999987533
No 121
>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.82 E-value=44 Score=22.61 Aligned_cols=13 Identities=23% Similarity=0.613 Sum_probs=11.0
Q ss_pred cceeeCCEEEEee
Q 029417 68 MHVKAGDTVKVIA 80 (193)
Q Consensus 68 ~~IkkGD~V~VI~ 80 (193)
+.+++||.|.|+.
T Consensus 25 Lsf~~Gd~i~v~~ 37 (85)
T 2dlp_A 25 LSFHRGDLIKLLP 37 (85)
T ss_dssp CCBCTTCEEEECC
T ss_pred ccCcCCCEEEEEE
Confidence 4489999999996
No 122
>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A
Probab=21.57 E-value=91 Score=19.25 Aligned_cols=15 Identities=13% Similarity=0.514 Sum_probs=12.1
Q ss_pred cceeeCCEEEEeecC
Q 029417 68 MHVKAGDTVKVIAGC 82 (193)
Q Consensus 68 ~~IkkGD~V~VI~Gk 82 (193)
+.+++||.|.|+.-.
T Consensus 20 Ls~~~Gd~i~v~~~~ 34 (60)
T 1oot_A 20 LPFRKGDVITILKKS 34 (60)
T ss_dssp CCBCTTCEEEEEECC
T ss_pred eeEcCCCEEEEEEeC
Confidence 348999999999754
No 123
>1vq8_Q 50S ribosomal protein L21E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_Q* 1vq5_Q* 1vq6_Q* 1vq7_Q* 1s72_Q* 1vq9_Q* 1vqk_Q* 1vql_Q* 1vqm_Q* 1vqn_Q* 1vqo_Q* 1vqp_Q* 1yhq_Q* 1yi2_Q* 1yij_Q* 1yit_Q* 1yj9_Q* 1yjn_Q* 1yjw_Q* 2otj_Q* ...
Probab=21.56 E-value=94 Score=22.85 Aligned_cols=35 Identities=17% Similarity=0.231 Sum_probs=25.9
Q ss_pred ceeeCCEEEEee------c----CCCCeeeEEEEEEccCCEEEEe
Q 029417 69 HVKAGDTVKVIA------G----CDKGKIGEITKVFRHNSTVMVK 103 (193)
Q Consensus 69 ~IkkGD~V~VI~------G----kdKGK~GkV~~V~~~~n~ViVE 103 (193)
..++||.|-|.- | .+-|++|.|..+...--.|+|.
T Consensus 33 ~yk~Gd~VdIk~~~svqKGmPhk~yHGkTG~V~~v~~~AvgV~Vn 77 (96)
T 1vq8_Q 33 EFDDGEKVHLKIDPSVPNGRFHPRFDGQTGTVEGKQGDAYKVDIV 77 (96)
T ss_dssp CCCTTCEEEECCCTTCCSSCCCGGGTTCEEEEEEEETTEEEEEEE
T ss_pred HcCCCCEEEEEecCCccCCCCcccCCCCCeEEEeECCCEEEEEEe
Confidence 357999998874 3 2668999999988775555554
No 124
>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=21.43 E-value=86 Score=20.48 Aligned_cols=14 Identities=21% Similarity=0.449 Sum_probs=11.4
Q ss_pred cceeeCCEEEEeec
Q 029417 68 MHVKAGDTVKVIAG 81 (193)
Q Consensus 68 ~~IkkGD~V~VI~G 81 (193)
+.+++||.|.|+.-
T Consensus 27 Ls~~~Gd~i~v~~~ 40 (77)
T 2enm_A 27 LTVTEGEIITVTNP 40 (77)
T ss_dssp CCCCTTCEEEEEES
T ss_pred ecCCCCCEEEEeEc
Confidence 33899999999874
No 125
>2v1r_A Peroxisomal membrane protein PAS20; protein transport, translocation, transmembrane, peptide COM structural genomics, peroxisome; 2.1A {Saccharomyces cerevisiae} SCOP: b.34.2.1
Probab=21.41 E-value=59 Score=21.43 Aligned_cols=15 Identities=20% Similarity=0.439 Sum_probs=11.9
Q ss_pred cceeeCCEEEEeecC
Q 029417 68 MHVKAGDTVKVIAGC 82 (193)
Q Consensus 68 ~~IkkGD~V~VI~Gk 82 (193)
+.+++||.|.|+.-.
T Consensus 32 Ls~~~Gd~i~v~~~~ 46 (80)
T 2v1r_A 32 VALKKGDLMAILSKK 46 (80)
T ss_dssp CCBCTTCEEEEEEEE
T ss_pred ecCCCCCEEEEEECC
Confidence 348999999999753
No 126
>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.35 E-value=50 Score=21.95 Aligned_cols=14 Identities=14% Similarity=0.214 Sum_probs=11.4
Q ss_pred cceeeCCEEEEeec
Q 029417 68 MHVKAGDTVKVIAG 81 (193)
Q Consensus 68 ~~IkkGD~V~VI~G 81 (193)
+.+++||.|.|+.-
T Consensus 34 Ls~~~Gd~i~v~~~ 47 (79)
T 1x69_A 34 ISFDPDDIITNIEM 47 (79)
T ss_dssp CCCCTTCEEEEEEE
T ss_pred cCcCCCCEEEEeEe
Confidence 44899999999864
No 127
>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR {Homo sapiens}
Probab=21.30 E-value=35 Score=22.20 Aligned_cols=14 Identities=21% Similarity=0.527 Sum_probs=11.1
Q ss_pred cceeeCCEEEEeec
Q 029417 68 MHVKAGDTVKVIAG 81 (193)
Q Consensus 68 ~~IkkGD~V~VI~G 81 (193)
+.+++||.|.|+.-
T Consensus 18 Ls~~~Gd~i~v~~~ 31 (65)
T 2fei_A 18 LELKVGDIIDINEE 31 (65)
T ss_dssp CCCCTTCEEECCCC
T ss_pred cCCCCCCEEEEEEe
Confidence 34889999999863
No 128
>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.92 E-value=37 Score=21.94 Aligned_cols=14 Identities=36% Similarity=0.662 Sum_probs=11.4
Q ss_pred cceeeCCEEEEeec
Q 029417 68 MHVKAGDTVKVIAG 81 (193)
Q Consensus 68 ~~IkkGD~V~VI~G 81 (193)
+.+++||.|.|+.-
T Consensus 25 Ls~~~Gd~i~v~~~ 38 (70)
T 2ega_A 25 LSLQAGEVVDVIEK 38 (70)
T ss_dssp CCCCTTCBCEEEEE
T ss_pred ccCCCCCEEEEEEc
Confidence 34899999999874
No 129
>1i07_A Epidermal growth factor receptor kinase substrate EPS8; hormone/growth factor; 1.80A {Mus musculus} SCOP: b.34.2.1 PDB: 1aoj_A 1i0c_A
Probab=20.84 E-value=58 Score=20.29 Aligned_cols=14 Identities=14% Similarity=0.423 Sum_probs=11.3
Q ss_pred cceeeCCEEEEeec
Q 029417 68 MHVKAGDTVKVIAG 81 (193)
Q Consensus 68 ~~IkkGD~V~VI~G 81 (193)
+.+++||.|.|+.-
T Consensus 18 Ls~~~Gd~i~v~~~ 31 (60)
T 1i07_A 18 LSVMKDDVLEILDD 31 (60)
T ss_dssp CCBCTTCEEEECGG
T ss_pred ccCCCCCEEEEEEc
Confidence 33899999999863
No 130
>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=20.83 E-value=47 Score=22.20 Aligned_cols=13 Identities=31% Similarity=0.667 Sum_probs=11.0
Q ss_pred cceeeCCEEEEee
Q 029417 68 MHVKAGDTVKVIA 80 (193)
Q Consensus 68 ~~IkkGD~V~VI~ 80 (193)
+.+++||.|.|+.
T Consensus 34 Lsf~~Gd~i~Vl~ 46 (72)
T 2l0a_A 34 LTFKAGEIITVLD 46 (72)
T ss_dssp CCBCTTCEEEEEE
T ss_pred cCCCCCCEEEEEE
Confidence 3489999999996
No 131
>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A {Saccharomyces cerevisiae}
Probab=20.68 E-value=73 Score=20.52 Aligned_cols=13 Identities=8% Similarity=0.271 Sum_probs=10.6
Q ss_pred cceeeCCEEEEee
Q 029417 68 MHVKAGDTVKVIA 80 (193)
Q Consensus 68 ~~IkkGD~V~VI~ 80 (193)
+.+++||.|.|+.
T Consensus 24 Lsf~~Gd~i~v~~ 36 (70)
T 2vkn_A 24 ISFEQNEILQVSD 36 (70)
T ss_dssp CCBCTTCEEEEEC
T ss_pred ccCCCCCEEEEEE
Confidence 3489999999975
No 132
>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3, actin-binding, cytoplasm, cytoskeleton, phosphorylation, SH3 domain, DNA damage, DNA repair, nucleus; NMR {Saccharomyces cerevisiae}
Probab=20.64 E-value=86 Score=20.02 Aligned_cols=14 Identities=29% Similarity=0.674 Sum_probs=11.5
Q ss_pred cceeeCCEEEEeec
Q 029417 68 MHVKAGDTVKVIAG 81 (193)
Q Consensus 68 ~~IkkGD~V~VI~G 81 (193)
+.+++||.|.|+.-
T Consensus 23 Ls~~~Gd~i~v~~~ 36 (71)
T 2jt4_A 23 LTIKSGDKVYILDD 36 (71)
T ss_dssp CCBCTTCEEEEEES
T ss_pred ccCCCCCEEEEEEC
Confidence 34899999999974
No 133
>3qyh_B CO-type nitrIle hydratase beta subunit; cobalt, cysteine sulfinic acid, lyase; 2.00A {Pseudomonas putida} SCOP: b.34.4.0 PDB: 3qxe_B 3qz5_B 3qyg_B 3qz9_B
Probab=20.58 E-value=68 Score=26.72 Aligned_cols=27 Identities=26% Similarity=0.498 Sum_probs=20.4
Q ss_pred cceeeCCEEEEeecC----------CCCeeeEEEEEE
Q 029417 68 MHVKAGDTVKVIAGC----------DKGKIGEITKVF 94 (193)
Q Consensus 68 ~~IkkGD~V~VI~Gk----------dKGK~GkV~~V~ 94 (193)
-+++.||+|.|..-. -+||+|+|..+.
T Consensus 129 ~~F~vGd~Vrv~~~~~~~HtR~P~Y~RG~~G~I~~~~ 165 (219)
T 3qyh_B 129 ARFAVGDKVRVLNKNPVGHTRMPRYTRGKVGTVVIDH 165 (219)
T ss_dssp CCCCTTCEEEECCCCCSSCCCSCGGGTTCEEEEEEEE
T ss_pred CCCCCCCEEEECCCCCCCcccccHHHCCCeeEEEEEe
Confidence 458899999996532 468999997664
No 134
>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3, protein-protein interaction, structural genomics; NMR {Homo sapiens}
Probab=20.56 E-value=64 Score=20.73 Aligned_cols=13 Identities=23% Similarity=0.572 Sum_probs=10.8
Q ss_pred cceeeCCEEEEee
Q 029417 68 MHVKAGDTVKVIA 80 (193)
Q Consensus 68 ~~IkkGD~V~VI~ 80 (193)
+.+++||.|.|+.
T Consensus 24 Ls~~~Gd~i~v~~ 36 (68)
T 1wxt_A 24 LTVVQGEKLEVLD 36 (68)
T ss_dssp CCBCTTCEEEEEE
T ss_pred CCCCCCCEEEEEE
Confidence 3489999999986
No 135
>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13; compact beta-barrel of five anti-parrallel beta-strands; 2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1n5z_A
Probab=20.55 E-value=62 Score=22.07 Aligned_cols=16 Identities=25% Similarity=0.509 Sum_probs=12.4
Q ss_pred cceeeCCEEEEeecCC
Q 029417 68 MHVKAGDTVKVIAGCD 83 (193)
Q Consensus 68 ~~IkkGD~V~VI~Gkd 83 (193)
+.+++||.|.|+.-.+
T Consensus 32 Lsf~~Gd~i~v~~~~~ 47 (92)
T 1jqq_A 32 VALKKGDLMAILSKKD 47 (92)
T ss_dssp CCBCTTCEEEEEEEEC
T ss_pred cCCCCCCEEEEEECCC
Confidence 3489999999997543
No 136
>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.49 E-value=71 Score=21.16 Aligned_cols=16 Identities=19% Similarity=0.445 Sum_probs=12.5
Q ss_pred cceeeCCEEEEeecCC
Q 029417 68 MHVKAGDTVKVIAGCD 83 (193)
Q Consensus 68 ~~IkkGD~V~VI~Gkd 83 (193)
+.+++||.|.|+.-.+
T Consensus 30 Ls~~~Gd~i~v~~~~~ 45 (78)
T 2dl5_A 30 LTIEEHEVLEVIEDGD 45 (78)
T ss_dssp CCBCSSEEEEEEECCS
T ss_pred CCCCCCCEEEEEeccC
Confidence 4489999999997543
No 137
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=20.11 E-value=1.1e+02 Score=21.07 Aligned_cols=20 Identities=15% Similarity=0.079 Sum_probs=15.6
Q ss_pred eeEEEEEEccCCEEEEecee
Q 029417 87 IGEITKVFRHNSTVMVKDIN 106 (193)
Q Consensus 87 ~GkV~~V~~~~n~ViVEGvN 106 (193)
.|.|...+.+++++.||=-|
T Consensus 9 vG~V~~~~~~~g~~~ie~rN 28 (89)
T 4he6_A 9 AGLVLGYDPETGIATVQQRN 28 (89)
T ss_dssp SEEEEEEETTTTEEEEEESS
T ss_pred EEEEEEEeCCCCEEEEEEcC
Confidence 58898888888888888444
No 138
>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=20.03 E-value=51 Score=21.24 Aligned_cols=14 Identities=36% Similarity=0.653 Sum_probs=11.3
Q ss_pred cceeeCCEEEEeec
Q 029417 68 MHVKAGDTVKVIAG 81 (193)
Q Consensus 68 ~~IkkGD~V~VI~G 81 (193)
+.+++||.|.|+.-
T Consensus 24 Ls~~~Gd~i~v~~~ 37 (70)
T 2da9_A 24 LTIKEGDIVTLINK 37 (70)
T ss_dssp CCCCTTEEEEEEEC
T ss_pred eeEcCCCEEEEEEC
Confidence 34899999999864
Done!