RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 029417
(193 letters)
>gnl|CDD|234566 PRK00004, rplX, 50S ribosomal protein L24; Reviewed.
Length = 105
Score = 141 bits (359), Expect = 4e-44
Identities = 52/104 (50%), Positives = 68/104 (65%)
Query: 67 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQIIKI 126
M +K GDTV VIAG DKGK G++ KV + V+V+ +N+ KH K +E QG II+
Sbjct: 2 MMKIKKGDTVIVIAGKDKGKRGKVLKVLPKKNKVIVEGVNIVKKHQKPNQENPQGGIIEK 61
Query: 127 EAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIID 170
EAPIH SNV L + A+RVG K L+DG +VR K+GE+ID
Sbjct: 62 EAPIHISNVALVDPKTGKATRVGFKFLEDGKKVRVAKKSGEVID 105
>gnl|CDD|233263 TIGR01079, rplX_bact, ribosomal protein L24, bacterial/organelle.
This model recognizes bacterial and organellar forms of
ribosomal protein L24. It excludes eukaryotic and
archaeal forms, designated L26 in eukaryotes [Protein
synthesis, Ribosomal proteins: synthesis and
modification].
Length = 104
Score = 129 bits (327), Expect = 3e-39
Identities = 53/104 (50%), Positives = 70/104 (67%), Gaps = 1/104 (0%)
Query: 67 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREE-EEQGQIIK 125
KM +K GDTVKVI+G DKGK G++ KV + V+V+ +N+ KHVK + QG II+
Sbjct: 1 KMKIKKGDTVKVISGKDKGKRGKVLKVLPKTNKVIVEGVNMVKKHVKPKPTQRSQGGIIE 60
Query: 126 IEAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEII 169
EAPIH SNVML+ + A+RVG + +DG +VR KTGEII
Sbjct: 61 KEAPIHISNVMLFDPKTGKATRVGIRFEEDGKKVRVFKKTGEII 104
>gnl|CDD|223276 COG0198, RplX, Ribosomal protein L24 [Translation, ribosomal
structure and biogenesis].
Length = 104
Score = 106 bits (267), Expect = 3e-30
Identities = 52/105 (49%), Positives = 68/105 (64%), Gaps = 3/105 (2%)
Query: 67 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQIIKI 126
KM VK GDTVKVIAG DKGK G++ KV V+V+ +N+ KH+K +E +G II
Sbjct: 2 KMKVKKGDTVKVIAGKDKGKEGKVLKVLPK--KVVVEGVNVVKKHIKPSQENPEGGIINK 59
Query: 127 EAPIHSSNVMLYSKEME-VASRVGHKVLDDGTRVRYLIKTGEIID 170
EAPIH SNV + +RVG+KV +DG +VR K+GE+ID
Sbjct: 60 EAPIHISNVAIIDPNKTGKPTRVGYKVEEDGKKVRVAKKSGEVID 104
>gnl|CDD|214374 CHL00141, rpl24, ribosomal protein L24; Validated.
Length = 83
Score = 104 bits (262), Expect = 9e-30
Identities = 46/75 (61%), Positives = 61/75 (81%)
Query: 67 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQIIKI 126
KMHVK GDTVK+I+G DKGKIGE+ K+ + ++ V+VK IN+K KH+K +E E G+I +
Sbjct: 6 KMHVKIGDTVKIISGSDKGKIGEVLKIIKKSNKVIVKGINIKFKHIKPNKENEVGEIKQF 65
Query: 127 EAPIHSSNVMLYSKE 141
EAPIHSSNVMLY++E
Sbjct: 66 EAPIHSSNVMLYNEE 80
>gnl|CDD|240513 cd06089, KOW_RPL26, KOW motif of Ribosomal Protein L26. RPL26 and
its bacterial paralogs RPL24 have a KOW motif at their N
terminal. KOW domain is known as an RNA-binding motif
that is shared so far among some families of ribosomal
proteins, the essential bacterial transcriptional
elongation factor NusG, the eukaryotic chromatin
elongation factor Spt5, the higher eukaryotic KIN17
proteins and Mtr4. RPL26 makes a very minor
contributions to the biogenesis, structure, and function
of 60s ribosomal subunits. However, RPL24 is essential
to generate the first intermediate during 50s ribosomal
subunits assembly. RPL26 have an extra-ribosomal
function to enhances p53 translation after DNA damage.
Length = 65
Score = 93.0 bits (232), Expect = 2e-25
Identities = 36/65 (55%), Positives = 47/65 (72%)
Query: 73 GDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQIIKIEAPIHS 132
GD V+VI G DKGK G++ KV R + V+V+ +N+ KHVK +E QG II++EAPIH
Sbjct: 1 GDEVQVIRGKDKGKQGKVLKVDRKKNRVIVEGVNVVKKHVKPSQENPQGGIIEVEAPIHI 60
Query: 133 SNVML 137
SNVML
Sbjct: 61 SNVML 65
>gnl|CDD|183399 PRK12281, rplX, 50S ribosomal protein L24; Reviewed.
Length = 76
Score = 74.7 bits (184), Expect = 3e-18
Identities = 30/69 (43%), Positives = 42/69 (60%)
Query: 67 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQIIKI 126
K+ VK GD VKVIAG DKGK G++ V + V+V+ + + K +K ++ G I+
Sbjct: 4 KLKVKKGDMVKVIAGDDKGKTGKVLAVLPKKNRVIVEGVKIAKKAIKPSQKNPNGGFIEK 63
Query: 127 EAPIHSSNV 135
E PIH SNV
Sbjct: 64 EMPIHISNV 72
>gnl|CDD|144165 pfam00467, KOW, KOW motif. This family has been extended to
coincide with ref. The KOW (Kyprides, Ouzounis, Woese)
motif is found in a variety of ribosomal proteins and
NusG.
Length = 32
Score = 40.5 bits (96), Expect = 9e-06
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 73 GDTVKVIAGCDKGKIGEITKVFRHNSTVMVK 103
GD V+VI+G KGK G++ +V + V V+
Sbjct: 2 GDVVRVISGPFKGKKGKVVEVDDSKARVHVE 32
>gnl|CDD|234915 PRK01191, rpl24p, 50S ribosomal protein L24P; Validated.
Length = 120
Score = 42.6 bits (101), Expect = 1e-05
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 17/83 (20%)
Query: 54 RKECKPNSLPVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVK 113
R++ SLPV + GDTVKV+ G KG+ G++ +V + V+ + VK
Sbjct: 36 REKYGIRSLPV------RKGDTVKVMRGDFKGEEGKVVEVDLKRGRIYVEGVT-----VK 84
Query: 114 KREEEEQGQIIKIEAPIHSSNVM 136
K + E + PIH SNVM
Sbjct: 85 KADGTEVPR------PIHPSNVM 101
>gnl|CDD|240504 cd00380, KOW, KOW: an acronym for the authors' surnames (Kyrpides,
Ouzounis and Woese). KOW domain is known as an
RNA-binding motif that is shared so far among some
families of ribosomal proteins, the essential bacterial
transcriptional elongation factor NusG, the eukaryotic
chromatin elongation factor Spt5, the higher eukaryotic
KIN17 proteins and Mtr4. The KOW motif contains an
invariants glycine residue and comprises alternating
blocks of hydrophilic and hydrophobic residues.
Length = 49
Score = 36.0 bits (84), Expect = 7e-04
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 73 GDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKK 114
GD V+V+ G KG+ G + + V VK K
Sbjct: 1 GDVVRVLRGPYKGREGVVVDIDPRFGIVTVKGATGSKGAELK 42
>gnl|CDD|128978 smart00739, KOW, KOW (Kyprides, Ouzounis, Woese) motif. Motif in
ribosomal proteins, NusG, Spt5p, KIN17 and T54.
Length = 28
Score = 35.0 bits (82), Expect = 9e-04
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 69 HVKAGDTVKVIAGCDKGKIGEITKVFRH 96
+ GDTV+VIAG KGK+G++ +V
Sbjct: 1 KFEVGDTVRVIAGPFKGKVGKVLEVDGE 28
>gnl|CDD|240515 cd06091, KOW_NusG, NusG contains an NGN domain at its N-terminus
and KOW motif at its C-terminus. KOW_NusG motif is one
of the two domains of N-Utilization Substance G (NusG) a
transcription elongation and Rho-termination factor in
bacteria and archaea. KOW domain is known as an
RNA-binding motif that is shared so far among some
families of ribosomal proteins, the essential bacterial
transcriptional elongation factor NusG, the eukaryotic
chromatin elongation factor Spt5, the higher eukaryotic
KIN17 proteins and Mtr4. The eukaryotic ortholog of NusG
is Spt5 with multiple KOW motifs at its C-terminus.
Length = 56
Score = 32.4 bits (75), Expect = 0.015
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 70 VKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMV 102
+ GDTV++I+G G G++ ++ V V
Sbjct: 4 FEVGDTVRIISGPFAGFEGKVEEIDEEKGKVKV 36
>gnl|CDD|150132 pfam09356, Phage_BR0599, Phage conserved hypothetical protein
BR0599. This entry describes a family of proteins
found almost exclusively in phage or in prophage
regions of bacterial genomes, including the phage-like
Rhodobacter capsulatus gene transfer agent, which
packages DNA. An apparent exception is Wolbachia
pipientis wMel, a bacterial endosymbiont of the fruit
fly, which has several candidate phage-related genes
physically separate from obvious prophage regions.
Length = 80
Score = 32.5 bits (75), Expect = 0.022
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 70 VKAGDTVKVIAGCDK 84
+ GD V++ AGCDK
Sbjct: 41 IAVGDAVRLTAGCDK 55
>gnl|CDD|240507 cd06083, KOW_Spt5_3, KOW domain of Spt5, repeat 3. Spt5, an
eukaryotic ortholog of NusG, contains multiple KOW
motifs at its C-terminus. Spt5 is involved in
transcription elongation and termination. KOW domain is
known as an RNA-binding motif that is shared so far
among some families of ribosomal proteins, the essential
bacterial transcriptional elongation factor NusG, the
eukaryotic chromatin elongation factor Spt5, the higher
eukaryotic KIN17 proteins and Mtr4. KOW_Spt5 domains
play critical roles in recruitment of multiple other
eukaryotic transcription elongation and RNA biogenesis
factors and additionally are involved in the binding of
the eukaryotic Spt5 proteins to RNA polymerases.
Length = 51
Score = 29.8 bits (68), Expect = 0.12
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 69 HVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVM 101
H K GD VKVI+G +G+ G + KV TV
Sbjct: 1 HFKVGDHVKVISGRHEGETGLVVKVEDDVVTVF 33
>gnl|CDD|130152 TIGR01080, rplX_A_E, ribosomal protein L24p/L26e,
archaeal/eukaryotic. This model represents the archaeal
and eukaryotic branch of the ribosomal protein L24p/L26e
family. Bacterial and organellar forms are represented
by related model TIGR01079 [Protein synthesis, Ribosomal
proteins: synthesis and modification].
Length = 114
Score = 30.5 bits (69), Expect = 0.20
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 17/84 (20%)
Query: 54 RKECKPNSLPVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVK 113
R++ +LPV + GD V+++ G KG G+++KV + V+ +
Sbjct: 32 REKYGKRALPV------RKGDKVRIMRGDFKGHEGKVSKVDLKRYRIYVEGVTK------ 79
Query: 114 KREEEEQGQIIKIEAPIHSSNVML 137
E+ G + + PIH SNVM+
Sbjct: 80 ---EKVNGTEVPV--PIHPSNVMI 98
>gnl|CDD|240508 cd06084, KOW_Spt5_4, KOW domain of Spt5, repeat 4. Spt5, an
eukaryotic ortholog of NusG, contains multiple KOW
motifs at its C-terminus. Spt5 is involved in
transcription elongation and termination. KOW domain is
known as an RNA-binding motif that is shared so far
among some families of ribosomal proteins, the essential
bacterial transcriptional elongation factor NusG, the
eukaryotic chromatin elongation factor Spt5, the higher
eukaryotic KIN17 proteins and Mtr4. KOW_Spt5 domains
play critical roles in recruitment of multiple other
eukaryotic transcription elongation and RNA biogenesis
factors and additionally are involved in the binding of
the eukaryotic Spt5 proteins to RNA polymerases.
Length = 43
Score = 27.9 bits (63), Expect = 0.45
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 73 GDTVKVIAGCDKGKIGEITKVFRHNSTVMVKD 104
GDTVKV+ G KG+ G + ++R T+ +
Sbjct: 1 GDTVKVVDGPYKGRQGTVLHIYR--GTLFLHS 30
>gnl|CDD|227736 COG5449, COG5449, Uncharacterized conserved protein [Function
unknown].
Length = 225
Score = 29.5 bits (66), Expect = 0.92
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 61 SLPVLHKMHVKAGDTVKVIAGCDK 84
L + +V GD K+ AGCDK
Sbjct: 160 ILEDIIPDYVAPGDEFKITAGCDK 183
>gnl|CDD|185508 PTZ00194, PTZ00194, 60S ribosomal protein L26; Provisional.
Length = 143
Score = 27.8 bits (62), Expect = 2.1
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 17/84 (20%)
Query: 54 RKECKPNSLPVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVK 113
R + S+PV + D V V+ G KG+ G++T V+R + ++ I +
Sbjct: 37 RAKYNVRSMPV------RKDDEVMVVRGHHKGREGKVTAVYRKKWVIHIEKIT------R 84
Query: 114 KREEEEQGQIIKIEAPIHSSNVML 137
++ E QI IH SNV++
Sbjct: 85 EKANGEPVQI-----GIHPSNVII 103
>gnl|CDD|140250 PTZ00223, PTZ00223, 40S ribosomal protein S4; Provisional.
Length = 273
Score = 28.4 bits (63), Expect = 2.1
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 64 VLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRH 96
V+ + + G V V G ++G+IGEI + RH
Sbjct: 166 VVDLIKNRNGKVVMVTGGANRGRIGEIVSIERH 198
>gnl|CDD|130335 TIGR01268, Phe4hydrox_tetr, phenylalanine-4-hydroxylase, tetrameric
form. This model describes the larger, tetrameric form
of phenylalanine-4-hydroxylase, as found in metazoans.
The enzyme irreversibly converts phenylalanine to
tryosine and is known to be the rate-limiting step in
phenylalanine catabolism in some systems. It is closely
related to metazoan tyrosine 3-monooxygenase and
tryptophan 5-monoxygenase, and more distantly to
monomeric phenylalanine-4-hydroxylases of some
Gram-negative bacteria. The member of this family from
Drosophila has been described as having both
phenylalanine-4-hydroxylase and tryptophan
5-monoxygenase activity (PMID:1371286). However, a
Drosophila member of the tryptophan 5-monoxygenase clade
has subsequently been discovered.
Length = 436
Score = 28.6 bits (64), Expect = 2.4
Identities = 5/31 (16%), Positives = 11/31 (35%)
Query: 80 AGCDKGKIGEITKVFRHNSTVMVKDINLKTK 110
K+ + + R + V V ++ K
Sbjct: 66 DEASDRKLEGVIEHLRQKAEVTVNILSRDNK 96
>gnl|CDD|212039 cd10329, SLC5sbd_SGLT1-like, Na(+)/glucose cotransporter SGLT1 and
related proteins; solute binding domain. This subfamily
includes the solute-binding domain of SGLT proteins that
cotransport Na+ with various solutes. Its members
include: the human glucose (SGLT1, -2, -4, -5 ),
chiro-inositol (SGLT5), and myo-inositol (SMIT)
cotransporters. It also includes human SGLT3 which has
been characterized as a glucose sensor and not a
transporter. It belongs to the solute carrier 5 (SLC5)
transporter family.
Length = 564
Score = 28.0 bits (63), Expect = 3.5
Identities = 12/23 (52%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 1 MAAM-AALQSSMTSLSISSNSFF 22
+A M AAL SS+TS+ SS++ F
Sbjct: 354 LAVMLAALMSSLTSIFNSSSTLF 376
>gnl|CDD|235860 PRK06778, PRK06778, hypothetical protein; Validated.
Length = 289
Score = 27.6 bits (61), Expect = 4.8
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Query: 89 EITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQIIKIEAPIHSSNVMLYSKEMEVASRV 148
T + +D+N KT +KK+ E G++ I M + EME+ +
Sbjct: 83 PATVAVPEETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEANLEMEIVPQ- 141
Query: 149 GHKVL--DDGTR 158
G +VL DD R
Sbjct: 142 GLRVLIKDDQNR 153
>gnl|CDD|240506 cd06082, KOW_Spt5_2, KOW domain of Spt5, repeat 2. Spt5, an
eukaryotic ortholog of NusG, contains multiple KOW
motifs at its C-terminus. Spt5 is involved in
transcription elongation and termination. KOW domain is
known as an RNA-binding motif that is shared so far
among some families of ribosomal proteins, the essential
bacterial transcriptional elongation factor NusG, the
eukaryotic chromatin elongation factor Spt5, the higher
eukaryotic KIN17 proteins and Mtr4. KOW_Spt5 domains
play critical roles in recruitment of multiple other
eukaryotic transcription elongation and RNA biogenesis
factors and additionally are involved in the binding of
the eukaryotic Spt5 proteins to RNA polymerases.
Length = 51
Score = 25.2 bits (56), Expect = 5.9
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 73 GDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKT 109
GD V+VI G KG G++ V T+M K +LK
Sbjct: 4 GDNVEVIEGELKGLQGKVESVDGDIVTIMPKHEDLKE 40
>gnl|CDD|233522 TIGR01672, AphA, HAD superfamily (subfamily IIIB) phosphatase,
TIGR01672. This family of proteins is a member of the
IIIB subfamily (pfam02767) of the haloacid dehalogenase
(HAD) superfamily of hydrolases. All characterized
members of subfamily III and most characterized members
of the HAD superfamily are phosphatases. HAD superfamily
phosphatases contain active site residues in several
conserved catalytic motifs, all of which are found
conserved here. The AphA gene from E. coli has been
characterized and shown to be an active phosphatase
enzyme. This family has been previously described as the
"class B non-specific bacterial acid phosphatase"
(B-NSAP) family where it is noted that the enzyme is
secreted and has a broad substrate range. The
possibility exists, however, that the enzyme is specific
for an as yet undefined substrate. Supporting evidence
for the inclusion in the HAD superfamily, whose
phosphatase members are magnesium dependent, is the
inhibition by EDTA and calcium ions, and stimulation by
magnesium ion.
Length = 237
Score = 26.8 bits (59), Expect = 6.5
Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 14/67 (20%)
Query: 52 WER--KECKPNSLPV-----LHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKD 104
WE+ S+P L MH + GD + + G GK ++K + K+
Sbjct: 102 WEKVNNGWDEFSIPKEVARQLIDMHQRRGDAIFFVTGRTPGKTDTVSK-------TLAKN 154
Query: 105 INLKTKH 111
++ +
Sbjct: 155 FHIPAMN 161
>gnl|CDD|131310 TIGR02257, cobalto_cobN, cobaltochelatase, CobN subunit.
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Heme, porphyrin, and cobalamin].
Length = 1122
Score = 27.4 bits (61), Expect = 6.7
Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 9/52 (17%)
Query: 138 YSKEMEVASRVGHKV---LDDGTRVRYLIKTGEIIDSAENWKKLKEANRQEK 186
+ +V + + D R+++ + D A NW KL+ E+
Sbjct: 326 FKGVSDVDPALESAITTYRPDPDRIKW------VADLAANWIKLQRKPNAER 371
>gnl|CDD|214670 smart00452, STI, Soybean trypsin inhibitor (Kunitz) family of
protease inhibitors.
Length = 172
Score = 26.5 bits (59), Expect = 8.1
Identities = 16/78 (20%), Positives = 31/78 (39%), Gaps = 8/78 (10%)
Query: 112 VKKREEEEQGQIIKIEAPIHSSNVMLYSKEMEV--------ASRVGHKVLDDGTRVRYLI 163
V+ E + G +K P S ++ S ++ + A V +D T +
Sbjct: 43 VQSPNEVDNGLPVKFSPPNPSDFIIRESTDLNIEFDAPPLCAQSTVWTVDEDSTPGGLAV 102
Query: 164 KTGEIIDSAENWKKLKEA 181
KTG ++W K+++
Sbjct: 103 KTGGYPGVNDSWFKIEKY 120
>gnl|CDD|226223 COG3700, AphA, Acid phosphatase (class B) [General function
prediction only].
Length = 237
Score = 26.4 bits (58), Expect = 8.4
Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 14/67 (20%)
Query: 52 WER--KECKPNSLPV-----LHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKD 104
WE+ S+P L MH + GD + + G GK ++K + K+
Sbjct: 102 WEKVNNGWDEFSIPKEVARQLIDMHQRRGDAIYFVTGRTPGKTDTVSK-------TLAKN 154
Query: 105 INLKTKH 111
++ +
Sbjct: 155 FHITNMN 161
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.129 0.360
Gapped
Lambda K H
0.267 0.0941 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,308,889
Number of extensions: 839261
Number of successful extensions: 948
Number of sequences better than 10.0: 1
Number of HSP's gapped: 942
Number of HSP's successfully gapped: 51
Length of query: 193
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 101
Effective length of database: 6,857,034
Effective search space: 692560434
Effective search space used: 692560434
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.0 bits)