RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 029417
(193 letters)
>3bbo_W Ribosomal protein L24; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 191
Score = 221 bits (564), Expect = 2e-74
Identities = 123/192 (64%), Positives = 146/192 (76%), Gaps = 1/192 (0%)
Query: 1 MAAMAALQSSMTSLSISSNSFFGQRLSFPSLSPITVKPTDKPCLIVVRLKRWERKECKPN 60
MAAM LQSS TSLS+SSNSF GQRL + PCLIV+R+KRWERK+CKPN
Sbjct: 1 MAAMV-LQSSFTSLSLSSNSFLGQRLFPSPTTLQVKTEGHSPCLIVMRIKRWERKDCKPN 59
Query: 61 SLPVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQ 120
SLP LHK HVK GDTVKVI+G +KGKIGEI+K+ +HNSTV++KD+N KTKHVK +EE EQ
Sbjct: 60 SLPKLHKRHVKVGDTVKVISGGEKGKIGEISKIHKHNSTVIIKDLNFKTKHVKSKEEGEQ 119
Query: 121 GQIIKIEAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIIDSAENWKKLKE 180
GQIIKIEA IHSSNVML KE EVA RVGHK+L+D +VRYLIKTGEI+D+ + WK+++
Sbjct: 120 GQIIKIEAAIHSSNVMLILKEQEVADRVGHKILEDVRKVRYLIKTGEIVDTPDRWKEIQN 179
Query: 181 ANRQEKTEVATA 192
E A
Sbjct: 180 KKESETAVAVAA 191
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA,
protein Y, stress RES stationary phase, ribosome
hibernation, ribosome; 2.70A {Thermus thermophilus} PDB:
1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y
2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y
2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ...
Length = 110
Score = 140 bits (354), Expect = 1e-43
Identities = 39/108 (36%), Positives = 61/108 (56%)
Query: 66 HKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQIIK 125
KMHVK GDTV V +G KG++G++ +V V+V+ +N+ K V+ + QG I+
Sbjct: 3 VKMHVKKGDTVLVASGKYKGRVGKVKEVLPKKYAVIVEGVNIVKKAVRVSPKYPQGGFIE 62
Query: 126 IEAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIIDSAE 173
EAP+H+S V +RV K L++G ++R K G +D+ E
Sbjct: 63 KEAPLHASKVRPICPACGKPTRVRKKFLENGKKIRVCAKCGGALDTEE 110
>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S*
1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R*
3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V
1voy_V 1vp0_V
Length = 115
Score = 131 bits (332), Expect = 4e-40
Identities = 37/113 (32%), Positives = 59/113 (52%), Gaps = 1/113 (0%)
Query: 58 KPNSLPVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREE 117
K+H K GDTV V++G KG+ G++ + V+V+ +N+ TK+VK
Sbjct: 4 PSAGSHHNDKLHFKKGDTVIVLSGKHKGQTGKVLLALPRDQKVVVEGVNVITKNVKPSMT 63
Query: 118 EEQGQIIKIEAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIID 170
QG + E +H+S V L E A+RV ++ DG +VR + +G+ ID
Sbjct: 64 NPQGGQEQRELALHASKVALVDPETGKATRVRKQI-VDGKKVRVAVASGKTID 115
>2ftc_N Mitochondrial ribosomal protein L24; mitochondrial ribosome, large
ribosomal subunit, ribosomal R ribosome; 12.10A {Bos
taurus} PDB: 3iy9_N
Length = 96
Score = 127 bits (322), Expect = 7e-39
Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 1/97 (1%)
Query: 73 GDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQIIKIEAPIHS 132
GDTV+++ G D GK G++ +V R + V+V +N +++ K + +G +I EAP+
Sbjct: 1 GDTVEILEGKDAGKQGKVVQVIRQRNWVVVGGLNTHYRYIGKTMDY-RGTMIPSEAPLLH 59
Query: 133 SNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEII 169
V L + + + + G RVR ++G II
Sbjct: 60 RQVKLVDPMDRKPTEIEWRFTEAGERVRVSTRSGRII 96
>3r8s_U 50S ribosomal protein L24; protein biosynthesis, RNA, tRNA,
transfer RNA, 23S ribosomal subunit, ribosome recycling
factor, RRF, ribosome; 3.00A {Escherichia coli} PDB:
2j28_U* 3fik_U 2wwq_U 3oat_U* 3oas_U* 3ofd_U 3ofc_U
3ofr_U* 3ofz_U* 3og0_U 3ofq_U 3r8t_U 3i1n_U 1vs8_U
1vs6_U 1vt2_U 3i1p_U 3i1r_U 3i1t_U 3i20_U ...
Length = 102
Score = 105 bits (265), Expect = 4e-30
Identities = 36/103 (34%), Positives = 53/103 (51%), Gaps = 3/103 (2%)
Query: 68 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVK-KREEEEQGQIIKI 126
++ D V V+ G DKGK G++ V V+V+ INL KH K + G I++
Sbjct: 2 AKIRRDDEVIVLTGKDKGKRGKVKNVLSSG-KVIVEGINLVKKHQKPVPALNQPGGIVEK 60
Query: 127 EAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEII 169
EA I SNV +++ A RVG + +DG +VR+ E I
Sbjct: 61 EAAIQVSNVAIFNAATGKADRVGFR-FEDGKKVRFFKSNSETI 102
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex,
RNA-RNA complex, PROT complex, peptidyl transferase
reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A
{Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T*
1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T*
1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T*
1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...
Length = 120
Score = 58.3 bits (141), Expect = 1e-11
Identities = 24/106 (22%), Positives = 45/106 (42%), Gaps = 17/106 (16%)
Query: 44 LIVVRLKRWERKECKPNSLPVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVK 103
+ L R+E + + V AGDTV+V+ G G+ GE+ V + + V+
Sbjct: 23 QVRATLSADLREEYGQRN------VRVNAGDTVEVLRGDFAGEEGEVINVDLDKAVIHVE 76
Query: 104 DINLKTKHVKKREEEEQGQIIKIEAPIHSSNVMLYSKEMEVASRVG 149
D+ L+ + ++ P+ +SNV + ++E R
Sbjct: 77 DVTLEKTDGE-----------EVPRPLDTSNVRVTDLDLEDEKREA 111
>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome,
ribosomal R ribosomal protein, STM1, eukaryotic
ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L
2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 1s1i_U 3izc_Y 3izs_Y
3jyw_U
Length = 127
Score = 45.8 bits (108), Expect = 5e-07
Identities = 14/72 (19%), Positives = 30/72 (41%), Gaps = 11/72 (15%)
Query: 66 HKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQIIK 125
+ ++ D V V+ G KG+ G+I+ V+R V V + + +
Sbjct: 46 KALPIRRDDEVLVVRGSKKGQEGKISSVYRLKFAVQVDKVTKEKVNGA-----------S 94
Query: 126 IEAPIHSSNVML 137
+ +H S +++
Sbjct: 95 VPINLHPSKLVI 106
>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_S 4a1c_S 4a1e_S
Length = 135
Score = 45.1 bits (106), Expect = 1e-06
Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 11/72 (15%)
Query: 66 HKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQIIK 125
M V+ D V ++ G KG G++T+V+R + V+ I+ +
Sbjct: 45 RSMPVRKDDEVLIVRGKFKGNKGKVTQVYRKKWAIHVEKISKNKLNGA-----------P 93
Query: 126 IEAPIHSSNVML 137
+ P+ +S ++L
Sbjct: 94 YQIPLSASQLVL 105
>3iz5_Y 60S ribosomal protein L26 (L24P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_Y
Length = 150
Score = 42.8 bits (100), Expect = 9e-06
Identities = 15/78 (19%), Positives = 35/78 (44%), Gaps = 11/78 (14%)
Query: 66 HKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQIIK 125
+ ++ D V+V+ G KG+ G++ +V+R + V+ I + +
Sbjct: 45 RSIPIRKDDEVQVVRGSYKGREGKVVQVYRRRWVIHVERITREKVNGS-----------T 93
Query: 126 IEAPIHSSNVMLYSKEME 143
+ IH S V++ +++
Sbjct: 94 VNVGIHPSKVVVTKLKLD 111
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.5 bits (102), Expect = 2e-05
Identities = 42/231 (18%), Positives = 83/231 (35%), Gaps = 70/231 (30%)
Query: 2 AAMAALQSSMTSLSISSNS-------FF-GQR--LSFP--SLSPITVK---------PTD 40
A A+ + + S + FF G R ++P SL P ++ P+
Sbjct: 279 TA-VAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPS- 336
Query: 41 KPCLIVVRLKRWERKEC---KPN-SLPVLHKMHVKA---GDTVKVIAGCDKGKIGEITKV 93
P L + L + E+ + K N LP ++ + + G V++G + G +
Sbjct: 337 -PMLSISNLTQ-EQVQDYVNKTNSHLPAGKQVEI-SLVNGAKNLVVSGPPQSLYG-LNLT 392
Query: 94 FRHNSTVMVKDINLKTKHVKKREEEEQGQIIKIEAPIHSS----------------NVML 137
R D + + +R+ + + + + +P HS NV
Sbjct: 393 LRKAKAPSGLDQS-RIPF-SERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSF 450
Query: 138 YSKEMEVASRVGHKVLD--DGTRVRYLIKTGEIIDS-AE-------NWKKL 178
+K++++ V D DG+ +R L +G I + + W+
Sbjct: 451 NAKDIQIP------VYDTFDGSDLRVL--SGSISERIVDCIIRLPVKWETT 493
Score = 29.2 bits (65), Expect = 0.86
Identities = 26/172 (15%), Positives = 52/172 (30%), Gaps = 50/172 (29%)
Query: 12 TSLSISSNSFF-GQRL--SFPSLSPITVKPTDKPCLIVVRLKRWERKECKPNSLPVLHK- 67
L + + SFF +L F + P +PT+ + +P + L
Sbjct: 18 HVLLVPTASFFIASQLQEQFNKILP---EPTEGFA-----------ADDEPTTPAELVGK 63
Query: 68 --MHVKAGDTVKVIAGCDKGKIGEITK-VFRH-NSTVMV-KDINLKTKH--VKKREEEEQ 120
+V ++ G+ ++ + + DI H K +E
Sbjct: 64 FLGYV-----SSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI-----HALAAKLLQEND 113
Query: 121 GQIIKIEAPIHSSNVMLYSKEMEVASRVGHK---------VLDDGTRVRYLI 163
++K + I + Y +A R K V + ++ I
Sbjct: 114 TTLVKTKELIKN-----YITARIMAKRPFDKKSNSALFRAVGEGNAQL-VAI 159
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.4 bits (96), Expect = 1e-04
Identities = 24/209 (11%), Positives = 66/209 (31%), Gaps = 52/209 (24%)
Query: 4 MAALQSSMTSLSISSNSFFGQRLSF----PSLSPITVKPTDKPCLIVVRLKRWERKECKP 59
M+ +++ S+ + + QR + V +P ++L++ E +P
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV-SRLQP---YLKLRQA-LLELRP 149
Query: 60 NSLPVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKR---- 115
++ + G GK T + D+ + V+ +
Sbjct: 150 AKNVLIDGV-----------LGS--GK------------TWVALDV-CLSYKVQCKMDFK 183
Query: 116 -------EEEEQGQIIKIEAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGE- 167
++++ + ++ + +S + ++ +R L+K+
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243
Query: 168 -----IIDSAENWKKLKEANRQEKTEVAT 191
++ + +N K N K + T
Sbjct: 244 ENCLLVLLNVQNAKAWNAFNLSCKILLTT 272
Score = 36.0 bits (82), Expect = 0.006
Identities = 25/198 (12%), Positives = 51/198 (25%), Gaps = 60/198 (30%)
Query: 11 MTSLSISSNSFFGQRLSFPSLSPITVKPTDKPCLIVVRLKRWERKECKPNSLPVLHKMHV 70
+ L + + R S + + L+R + + N L VL
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA------ELRRLLKSKPYENCLLVL----- 250
Query: 71 KAGDTVKVIAGCDKGKIGEITKVFRHNSTVMV--KDINL-------KTKHVKKREEEEQG 121
V + + F + +++ + + T H+ +
Sbjct: 251 ---LNV-----QNA----KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL-DHHSMT 297
Query: 122 QIIKIEAPIHSSNVMLYSKEME--VASRVGHKVLD------DGT-RVRYLIKTGE-IIDS 171
L E++ + + + D R +I E I D
Sbjct: 298 ---------------LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII--AESIRDG 340
Query: 172 AENWKKLKEANRQEKTEV 189
W K N + T +
Sbjct: 341 LATWDNWKHVNCDKLTTI 358
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 145
Score = 36.1 bits (83), Expect = 0.002
Identities = 15/73 (20%), Positives = 33/73 (45%), Gaps = 12/73 (16%)
Query: 66 HKMHVKAGDTVKVIAGCDKGK-IGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQII 124
M ++ D V+V+ G KG+ IG++ +V+R + ++ + + +
Sbjct: 45 RSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGT----------- 93
Query: 125 KIEAPIHSSNVML 137
+ IH S V++
Sbjct: 94 TVHVGIHPSKVVI 106
>3p8b_B Transcription antitermination protein NUSG; transcription
elongation factor, RNA polymerase, transferase
transcription complex; 1.80A {Pyrococcus furiosus} PDB:
3qqc_D
Length = 152
Score = 31.7 bits (72), Expect = 0.071
Identities = 14/61 (22%), Positives = 31/61 (50%), Gaps = 8/61 (13%)
Query: 70 VKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVK--------DINLKTKHVKKREEEEQG 121
++ GD V+VIAG KG+ ++ K+ V+V+ + +K +V+ + ++
Sbjct: 92 LEPGDLVEVIAGPFKGQKAKVVKIDESKDEVVVQFIDAIVPIPVTIKGDYVRLISKLQKE 151
Query: 122 Q 122
+
Sbjct: 152 E 152
>2do3_A Transcription elongation factor SPT5; KOW motif, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.34.5.5
Length = 69
Score = 28.9 bits (65), Expect = 0.21
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 69 HVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVM----VKDINLKTKHVKKREE 117
+ K GD VKVIAG +G G I +V + + + ++ + + ++ E
Sbjct: 17 YFKMGDHVKVIAGRFEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSE 69
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.22
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 10/30 (33%)
Query: 48 RLKRWERKECKPNSLPVLHKMHVKAGDTVK 77
LK + +S P L +KA T++
Sbjct: 28 SLKLYA-----DDSAPAL---AIKA--TME 47
Score = 28.0 bits (61), Expect = 1.5
Identities = 5/24 (20%), Positives = 14/24 (58%), Gaps = 6/24 (25%)
Query: 118 EEQGQIIKIEAPIHSSNVMLYSKE 141
E+Q + K++ +++ LY+ +
Sbjct: 18 EKQ-ALKKLQ-----ASLKLYADD 35
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.4 bits (65), Expect = 0.58
Identities = 16/79 (20%), Positives = 31/79 (39%), Gaps = 21/79 (26%)
Query: 111 HVKKREEEEQGQIIKIEAPIHSSNVMLYSKEMEVASR-VGHKVLDDGTRVRYLIKTGEII 169
++K EE++ ++ +++A SK ME R K L++ + +
Sbjct: 86 SIRKWREEQRKRLQELDAA---------SKVMEQEWREKAKKDLEEWNQRQ--------- 127
Query: 170 DSAENWKKLKEANRQEKTE 188
+E +K K NR
Sbjct: 128 --SEQVEKNKINNRIADKA 144
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 59
Score = 26.3 bits (58), Expect = 1.3
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 73 GDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLK 108
GD V+V G G+I V + T+M K +LK
Sbjct: 11 GDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLK 46
>2ckk_A KIN17; beta barrel, ribosomal protein, ribonucleoprotein, nuclear
protein; 1.45A {Homo sapiens}
Length = 127
Score = 27.6 bits (61), Expect = 1.4
Identities = 5/33 (15%), Positives = 12/33 (36%)
Query: 71 KAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVK 103
G + V+ G +G G + + + +
Sbjct: 72 APGKRILVLNGGYRGNEGTLESINEKTFSATIV 104
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics,
PSI, protein structure initiative; 2.80A {Legionella
pneumophila} SCOP: a.118.24.1
Length = 376
Score = 27.6 bits (61), Expect = 3.0
Identities = 5/50 (10%), Positives = 16/50 (32%), Gaps = 6/50 (12%)
Query: 144 VASRVGHKVLDDGTRVRYLIKTGEIIDSAENWKKLKEANRQEKTEVATAA 193
+A R+G++ L+ ++ + + ++ A
Sbjct: 325 LALRLGNQGA-----CALLLSIPSVLALTKA-NNYYINETGGRLDLRAVA 368
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich
RE receptor-like kinases, leucine-rich repeat; HET: NAG
BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A*
3rj0_A*
Length = 768
Score = 27.2 bits (61), Expect = 4.2
Identities = 7/24 (29%), Positives = 11/24 (45%), Gaps = 3/24 (12%)
Query: 9 SSMTSLSISSNSFFGQRLSFPSLS 32
++ L +SSN+F P L
Sbjct: 200 VNLEFLDVSSNNFST---GIPFLG 220
>3iz6_E 40S ribosomal protein S2 (S5P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
2zkq_e 1s1h_E
Length = 274
Score = 26.4 bits (58), Expect = 6.2
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 41 KPCLIVVRLKRWERKECKPNSLPVLHKMHVKAG 73
K ++ VR W K +P+++P K+ K G
Sbjct: 142 KLSVVPVRRGYWGNKIGQPHTVP--CKVTGKCG 172
>1n0e_A Protein MRAZ; cell division and cell WALL biosynthesis protein,
structural genomics, BSGC structure funded by NIH;
2.70A {Mycoplasma pneumoniae} SCOP: b.129.1.2 PDB:
1n0f_A 1n0g_A
Length = 166
Score = 25.8 bits (57), Expect = 7.5
Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 6/51 (11%)
Query: 25 RLSFPS-----LSP-ITVKPTDKPCLIVVRLKRWERKECKPNSLPVLHKMH 69
R+S P+ I + + CL V + + +++ + NS P K
Sbjct: 40 RISLPAKLRAFFEGSIVINRGFENCLEVRKPQDFQKYFEQFNSFPSTQKDT 90
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.129 0.360
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,799,461
Number of extensions: 159726
Number of successful extensions: 460
Number of sequences better than 10.0: 1
Number of HSP's gapped: 449
Number of HSP's successfully gapped: 37
Length of query: 193
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 105
Effective length of database: 4,244,745
Effective search space: 445698225
Effective search space used: 445698225
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.4 bits)