RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 029417
(193 letters)
>d2j01y1 b.34.5.1 (Y:2-102) Ribosomal proteins L24 (L24p) {Thermus
thermophilus [TaxId: 274]}
Length = 101
Score = 110 bits (276), Expect = 2e-32
Identities = 36/98 (36%), Positives = 56/98 (57%)
Query: 67 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQIIKI 126
KMHVK GDTV V +G KG++G++ +V V+V+ +N+ K V+ + QG I+
Sbjct: 3 KMHVKKGDTVLVASGKYKGRVGKVKEVLPKKYAVIVEGVNIVKKAVRVSPKYPQGGFIEK 62
Query: 127 EAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIK 164
EAP+H+S V +RV K L++G ++R K
Sbjct: 63 EAPLHASKVRPICPACGKPTRVRKKFLENGKKIRVCAK 100
>d2zjrr1 b.34.5.1 (R:4-113) Ribosomal proteins L24 (L24p)
{Deinococcus radiodurans [TaxId: 1299]}
Length = 110
Score = 105 bits (263), Expect = 3e-30
Identities = 35/101 (34%), Positives = 57/101 (56%), Gaps = 1/101 (0%)
Query: 67 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQIIKI 126
K+H K GDTV V++G KG+ G++ + V+V+ +N+ TK+VK QG +
Sbjct: 10 KLHFKKGDTVIVLSGKHKGQTGKVLLALPRDQKVVVEGVNVITKNVKPSMTNPQGGQEQR 69
Query: 127 EAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGE 167
E +H+S V L E A+RV ++ DG +VR + +G+
Sbjct: 70 ELALHASKVALVDPETGKATRVRKQI-VDGKKVRVAVASGK 109
>d2gycs1 b.34.5.1 (S:3-101) Ribosomal proteins L24 (L24p)
{Escherichia coli [TaxId: 562]}
Length = 99
Score = 98.6 bits (246), Expect = 8e-28
Identities = 35/99 (35%), Positives = 52/99 (52%), Gaps = 3/99 (3%)
Query: 70 VKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKR-EEEEQGQIIKIEA 128
++ D V V+ G DKGK G++ V V+V+ INL KH K + G I++ EA
Sbjct: 2 IRRDDEVIVLTGKDKGKRGKVKNVLSSG-KVIVEGINLVKKHQKPVPALNQPGGIVEKEA 60
Query: 129 PIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGE 167
I SNV +++ A RVG + +DG +VR+ E
Sbjct: 61 AIQVSNVAIFNAATGKADRVGFR-FEDGKKVRFFKSNSE 98
>d1vqot1 b.34.5.1 (T:1-119) Ribosomal proteins L24 (L24p) {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 119
Score = 78.2 bits (193), Expect = 1e-19
Identities = 25/114 (21%), Positives = 48/114 (42%), Gaps = 17/114 (14%)
Query: 44 LIVVRLKRWERKECKPNSLPVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVK 103
+ L R+E + + V AGDTV+V+ G G+ GE+ V + + V+
Sbjct: 22 QVRATLSADLREEYGQRN------VRVNAGDTVEVLRGDFAGEEGEVINVDLDKAVIHVE 75
Query: 104 DINLKTKHVKKREEEEQGQIIKIEAPIHSSNVMLYSKEMEVASRVGHKVLDDGT 157
D+ L+ + ++ P+ +SNV + ++E R +D +
Sbjct: 76 DVTLEKTDGE-----------EVPRPLDTSNVRVTDLDLEDEKREARLESEDDS 118
>d1rzhh1 b.41.1.1 (H:36-248) Photosynthetic reaction centre
{Rhodobacter sphaeroides [TaxId: 1063]}
Length = 213
Score = 30.1 bits (68), Expect = 0.11
Identities = 12/67 (17%), Positives = 24/67 (35%), Gaps = 2/67 (2%)
Query: 61 SLPVLHKMHVKAGDTVK--VIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEE 118
+ HV AG + GCD G++ ++ M + + ++ K R
Sbjct: 98 PMKAAAGFHVSAGKNPIGLPVRGCDLEIAGKVVDIWVDIPEQMARFLEVELKDGSTRLLP 157
Query: 119 EQGQIIK 125
Q ++
Sbjct: 158 MQMVKVQ 164
>d1nppa2 b.34.5.4 (A:191-248) N-utilization substance G protein
NusG, C-terminal domain {Aquifex aeolicus [TaxId:
63363]}
Length = 58
Score = 28.0 bits (63), Expect = 0.12
Identities = 10/36 (27%), Positives = 16/36 (44%)
Query: 67 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMV 102
K+ + GD V+VI G G + +V + V
Sbjct: 2 KVEFEKGDQVRVIEGPFMNFTGTVEEVHPEKRKLTV 37
>d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol
dehydrogenase) {Silverleaf whitefly (Bemisia
argentifolii) [TaxId: 77855]}
Length = 178
Score = 30.0 bits (66), Expect = 0.12
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 65 LHKMHVKAGDTVKVIAGC 82
KA +T+KV+ C
Sbjct: 159 FEAARKKADNTIKVMISC 176
>d2do3a1 b.34.5.5 (A:462-523) Transcription elongation factor SPT5
{Human (Homo sapiens) [TaxId: 9606]}
Length = 62
Score = 27.3 bits (61), Expect = 0.29
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 69 HVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVM 101
+ K GD VKVIAG +G G I +V + +
Sbjct: 10 YFKMGDHVKVIAGRFEGDTGLIVRVEENFVILF 42
>d1nz9a_ b.34.5.4 (A:) N-utilization substance G protein NusG,
C-terminal domain {Thermus thermophilus [TaxId: 274]}
Length = 58
Score = 26.8 bits (60), Expect = 0.32
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 67 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMV 102
++ + GD V+V++G G +T++ V V
Sbjct: 2 QVAFREGDQVRVVSGPFADFTGTVTEINPERGKVKV 37
>d1eaqa_ b.2.5.6 (A:) Acute myeloid leukemia 1 protein (AML1), RUNT
domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 124
Score = 26.3 bits (58), Expect = 1.7
Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 5/64 (7%)
Query: 39 TDKPCLIVVRL-KRWERKECKPNSLPVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHN 97
TD P + L W + P + V+ V G V V+AG D+ E+ R+
Sbjct: 16 TDSPNFLSSVLPTHWRSNKTLPIAFKVVALGDVPDGTLVTVMAGNDENYSAEL----RNA 71
Query: 98 STVM 101
+ M
Sbjct: 72 TAAM 75
>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo
sapiens), different isozymes [TaxId: 9606]}
Length = 176
Score = 26.5 bits (57), Expect = 1.7
Identities = 7/53 (13%), Positives = 15/53 (28%), Gaps = 1/53 (1%)
Query: 63 PVLHKMHVKAGDTVKVIAGCDK-GKIGEITKVFRHNSTVMVKDINLKTKHVKK 114
++ ++ G V + KV + + V K K+
Sbjct: 19 AAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKE 71
>d1ih7a2 e.8.1.1 (A:376-903) Family B DNA polymerase {Bacteriophage
RB69 [TaxId: 12353]}
Length = 528
Score = 26.1 bits (56), Expect = 3.4
Identities = 13/118 (11%), Positives = 40/118 (33%), Gaps = 5/118 (4%)
Query: 53 ERKECKPNSLPVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHV 112
E + +S P + +K +++ ++ + + + I
Sbjct: 353 MGLETQKSSTPKAVQKALKEC-IRRMLQEGEESLQEYFKEFEKEFRQLNYISIASV-SSA 410
Query: 113 KKREEEEQGQIIKIEAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYL-IKTGEII 169
+ + G + P H ++ Y++ ++ + + +G +V L ++ G
Sbjct: 411 NNIAKYDVGGFPGPKCPFHIRGILTYNRAIK--GNIDAPQVVEGEKVYVLPLREGNPF 466
>d1v47a2 c.26.1.5 (A:136-349) ATP sulfurylase catalytic domain
{Thermus thermophilus [TaxId: 274]}
Length = 214
Score = 25.7 bits (56), Expect = 3.9
Identities = 12/62 (19%), Positives = 21/62 (33%), Gaps = 1/62 (1%)
Query: 109 TKHVKKREEEEQGQIIKIEAPIHSSNVMLYSKEMEVASRVGHKVLD-DGTRVRYLIKTGE 167
+ R +I+K+ A H + E K T+VR L++ G+
Sbjct: 136 AHRIFDRLPPLGIEIVKVGAVFHCPLCGGIASERTCPEGHREKRTAISMTKVRALLREGK 195
Query: 168 II 169
Sbjct: 196 AP 197
>d1qwya_ b.84.3.2 (A:) Peptidoglycan hydrolase LytM {Staphylococcus
aureus [TaxId: 1280]}
Length = 270
Score = 25.4 bits (55), Expect = 4.5
Identities = 10/53 (18%), Positives = 16/53 (30%)
Query: 72 AGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQII 124
D V AG G + NS ++ V ++ + G I
Sbjct: 182 LTDGTVVQAGWSNYGGGNQVTIKEANSNNYQWYMHNNRLTVSAGDKVKAGDQI 234
>d3c5zd2 d.19.1.1 (D:1-120) Class II MHC beta chain, N-terminal
domain {Mouse (Mus musculus), I-AB [TaxId: 10090]}
Length = 120
Score = 24.3 bits (53), Expect = 7.5
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 171 SAENWKKLKEANRQEKTEVAT 191
AE W E + + E+ T
Sbjct: 83 DAEYWNSQPEILERTRAELDT 103
>d1mjca_ b.40.4.5 (A:) Major cold shock protein {Escherichia coli
[TaxId: 562]}
Length = 69
Score = 23.2 bits (50), Expect = 9.0
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 149 GHKVLDDGTRVRYLIKTGEIIDSAENWKKL 178
G+K LD+G +V + I++G +A N L
Sbjct: 40 GYKSLDEGQKVSFTIESGAKGPAAGNVTSL 69
>d1nxza1 b.122.1.2 (A:2-73) Hypothetical protein HI0303 {Haemophilus
influenzae [TaxId: 727]}
Length = 72
Score = 23.2 bits (50), Expect = 9.6
Identities = 4/35 (11%), Positives = 16/35 (45%)
Query: 68 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMV 102
+ + G+ +++ G + +I + + + V +
Sbjct: 31 LRMTEGEQLELFDGSNHIYPAKIIESNKKSVKVEI 65
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.129 0.360
Gapped
Lambda K H
0.267 0.0668 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 674,802
Number of extensions: 30424
Number of successful extensions: 164
Number of sequences better than 10.0: 1
Number of HSP's gapped: 160
Number of HSP's successfully gapped: 34
Length of query: 193
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 112
Effective length of database: 1,295,466
Effective search space: 145092192
Effective search space used: 145092192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.2 bits)