BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029418
         (193 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1X1O|A Chain A, Crystal Structure Of Project Id Tt0268 From Thermus
           Thermophilus Hb8
 pdb|1X1O|B Chain B, Crystal Structure Of Project Id Tt0268 From Thermus
           Thermophilus Hb8
 pdb|1X1O|C Chain C, Crystal Structure Of Project Id Tt0268 From Thermus
           Thermophilus Hb8
          Length = 286

 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 46/80 (57%), Gaps = 1/80 (1%)

Query: 110 LAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKD 169
           L ED G +GD+T +  +P D+E EA  LAKE G++AG+ +AE +F   DP       + +
Sbjct: 22  LREDLG-QGDLTSLLVVPEDLEGEAVILAKEGGVLAGLWVAERVFALADPRTAFTPLVAE 80

Query: 170 GDHVHKGLQFGKVSGKPRKI 189
           G  V +G +  +V G  R I
Sbjct: 81  GARVAEGTEVARVRGPLRGI 100


>pdb|3GNN|A Chain A, Crystal Structure Of Nicotinate-Nucleotide
           Pyrophosphorylase From Burkholderi Pseudomallei
 pdb|3GNN|B Chain B, Crystal Structure Of Nicotinate-Nucleotide
           Pyrophosphorylase From Burkholderi Pseudomallei
          Length = 298

 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 2/81 (2%)

Query: 109 ALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLK 168
           ALAED G  GD T    +P      A  + +ED ++ G+   + +   VDPS++V+W  +
Sbjct: 36  ALAEDVGS-GDQTGR-LVPDGAPRRARVIVREDAVLCGVPWFDAVVRAVDPSIEVDWRHR 93

Query: 169 DGDHVHKGLQFGKVSGKPRKI 189
           +GD +       ++ G  R +
Sbjct: 94  EGDRMSADSTVCELRGPARAL 114


>pdb|1QAP|A Chain A, Quinolinic Acid Phosphoribosyltransferase With Bound
           Quinolinic Acid
 pdb|1QAP|B Chain B, Quinolinic Acid Phosphoribosyltransferase With Bound
           Quinolinic Acid
          Length = 296

 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 4/91 (4%)

Query: 101 DLKGVVKLALAEDAG---DRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEV 157
           D+   V  AL ED G   D G+      +P D +  A  + +EDG+  G    E +F ++
Sbjct: 21  DIPAAVAQALREDLGGEVDAGNDITAQLLPADTQAHATVITREDGVFCGKRWVEEVFIQL 80

Query: 158 -DPSLKVEWSLKDGDHVHKGLQFGKVSGKPR 187
               +++ W + DGD +H      ++ G  R
Sbjct: 81  AGDDVRLTWHVDDGDAIHANQTVFELQGPAR 111


>pdb|3L0G|A Chain A, Crystal Structure Of Nicotinate-Nucleotide
           Pyrophosphorylase From Ehrlichia Chaffeensis At 2.05a
           Resolution
 pdb|3L0G|B Chain B, Crystal Structure Of Nicotinate-Nucleotide
           Pyrophosphorylase From Ehrlichia Chaffeensis At 2.05a
           Resolution
 pdb|3L0G|C Chain C, Crystal Structure Of Nicotinate-Nucleotide
           Pyrophosphorylase From Ehrlichia Chaffeensis At 2.05a
           Resolution
 pdb|3L0G|D Chain D, Crystal Structure Of Nicotinate-Nucleotide
           Pyrophosphorylase From Ehrlichia Chaffeensis At 2.05a
           Resolution
          Length = 300

 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 1/67 (1%)

Query: 105 VVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVE 164
           ++  AL ED GD+GD+T   +I ++ +V      +E+ ++ GI + E +F+     +K E
Sbjct: 29  IIHNALKEDLGDKGDIT-TNSILINEKVNFAINTRENLVVCGIPILEEVFNMNKEHVKYE 87

Query: 165 WSLKDGD 171
              KDGD
Sbjct: 88  IHKKDGD 94


>pdb|3PAJ|A Chain A, 2.00 Angstrom Resolution Crystal Structure Of A
           Quinolinate Phosphoribosyltransferase From Vibrio
           Cholerae O1 Biovar Eltor Str. N16961
 pdb|3PAJ|B Chain B, 2.00 Angstrom Resolution Crystal Structure Of A
           Quinolinate Phosphoribosyltransferase From Vibrio
           Cholerae O1 Biovar Eltor Str. N16961
          Length = 320

 Score = 37.0 bits (84), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 1/95 (1%)

Query: 93  KLPSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEM 152
           +LP+  T  +   +K  L        D+T  + IP D    A  + +E G+  G   A+ 
Sbjct: 41  QLPADITRSVIDTLKEDLGGTLDPAADITA-SLIPADRISTATIITREAGVFCGQLWADE 99

Query: 153 IFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGKPR 187
           +F ++   + +EW ++DGD +        ++G  R
Sbjct: 100 VFKQLGGQVSIEWHVQDGDTLTPNQTLCTLTGPAR 134


>pdb|1QPR|A Chain A, Quinolinate Phosphoribosyltransferase (Qaprtase) From
           Mycobacterium Tuberculosis In Complex With Phthalate And
           Prpcp
 pdb|1QPR|B Chain B, Quinolinate Phosphoribosyltransferase (Qaprtase) From
           Mycobacterium Tuberculosis In Complex With Phthalate And
           Prpcp
 pdb|1QPR|C Chain C, Quinolinate Phosphoribosyltransferase (Qaprtase) From
           Mycobacterium Tuberculosis In Complex With Phthalate And
           Prpcp
 pdb|1QPR|D Chain D, Quinolinate Phosphoribosyltransferase (Qaprtase) From
           Mycobacterium Tuberculosis In Complex With Phthalate And
           Prpcp
 pdb|1QPR|E Chain E, Quinolinate Phosphoribosyltransferase (Qaprtase) From
           Mycobacterium Tuberculosis In Complex With Phthalate And
           Prpcp
 pdb|1QPR|F Chain F, Quinolinate Phosphoribosyltransferase (Qaprtase) From
           Mycobacterium Tuberculosis In Complex With Phthalate And
           Prpcp
 pdb|1QPN|A Chain A, Quinolinate Phosphoribosyl Transferase From Mycobacterium
           Tuberculosis In Complex With Ncnn
 pdb|1QPN|B Chain B, Quinolinate Phosphoribosyl Transferase From Mycobacterium
           Tuberculosis In Complex With Ncnn
 pdb|1QPN|C Chain C, Quinolinate Phosphoribosyl Transferase From Mycobacterium
           Tuberculosis In Complex With Ncnn
 pdb|1QPN|D Chain D, Quinolinate Phosphoribosyl Transferase From Mycobacterium
           Tuberculosis In Complex With Ncnn
 pdb|1QPN|E Chain E, Quinolinate Phosphoribosyl Transferase From Mycobacterium
           Tuberculosis In Complex With Ncnn
 pdb|1QPN|F Chain F, Quinolinate Phosphoribosyl Transferase From Mycobacterium
           Tuberculosis In Complex With Ncnn
 pdb|1QPO|A Chain A, Quinolinate Phosphoribosyl Transferase (qaprtase)
           Apo-enzyme From Mycobacterium Tuberculosis
 pdb|1QPO|B Chain B, Quinolinate Phosphoribosyl Transferase (qaprtase)
           Apo-enzyme From Mycobacterium Tuberculosis
 pdb|1QPO|C Chain C, Quinolinate Phosphoribosyl Transferase (qaprtase)
           Apo-enzyme From Mycobacterium Tuberculosis
 pdb|1QPO|D Chain D, Quinolinate Phosphoribosyl Transferase (qaprtase)
           Apo-enzyme From Mycobacterium Tuberculosis
 pdb|1QPO|E Chain E, Quinolinate Phosphoribosyl Transferase (qaprtase)
           Apo-enzyme From Mycobacterium Tuberculosis
 pdb|1QPO|F Chain F, Quinolinate Phosphoribosyl Transferase (qaprtase)
           Apo-enzyme From Mycobacterium Tuberculosis
 pdb|1QPQ|A Chain A, Structure Of Quinolinic Acid Phosphoribosyltransferase
           From Mycobacterium Tuberculosis: A Potential Tb Drug
           Target
 pdb|1QPQ|B Chain B, Structure Of Quinolinic Acid Phosphoribosyltransferase
           From Mycobacterium Tuberculosis: A Potential Tb Drug
           Target
 pdb|1QPQ|C Chain C, Structure Of Quinolinic Acid Phosphoribosyltransferase
           From Mycobacterium Tuberculosis: A Potential Tb Drug
           Target
 pdb|1QPQ|D Chain D, Structure Of Quinolinic Acid Phosphoribosyltransferase
           From Mycobacterium Tuberculosis: A Potential Tb Drug
           Target
 pdb|1QPQ|E Chain E, Structure Of Quinolinic Acid Phosphoribosyltransferase
           From Mycobacterium Tuberculosis: A Potential Tb Drug
           Target
 pdb|1QPQ|F Chain F, Structure Of Quinolinic Acid Phosphoribosyltransferase
           From Mycobacterium Tuberculosis: A Potential Tb Drug
           Target
          Length = 284

 Score = 35.4 bits (80), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 2/73 (2%)

Query: 119 DVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEV--DPSLKVEWSLKDGDHVHKG 176
           DVT +AT+P      A  + +E G++AG+ +A +  +EV      +V   ++DG  V  G
Sbjct: 27  DVTTLATVPASATTTASLVTREAGVVAGLDVALLTLNEVLGTNGYRVLDRVEDGARVPPG 86

Query: 177 LQFGKVSGKPRKI 189
                +  + R +
Sbjct: 87  EALMTLEAQTRGL 99


>pdb|4E4T|A Chain A, Crystal Structure Of Phosphoribosylaminoimidazole
           Carboxylase, Atpase Subunit From Burkholderia Ambifaria
 pdb|4E4T|B Chain B, Crystal Structure Of Phosphoribosylaminoimidazole
           Carboxylase, Atpase Subunit From Burkholderia Ambifaria
          Length = 419

 Score = 31.2 bits (69), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 6/63 (9%)

Query: 100 YDLKGVVKLALAEDAGDR----GDVTCM--ATIPLDMEVEAHFLAKEDGIIAGIALAEMI 153
           YD KG V+++ A +A D     G V C+    +PL  EV A      DG  A   LA+ +
Sbjct: 183 YDGKGQVRVSTAREARDAHAALGGVPCVLEKRLPLKYEVSALIARGADGRSAAFPLAQNV 242

Query: 154 FHE 156
            H 
Sbjct: 243 HHN 245


>pdb|4IZO|A Chain A, Crystal Structure Of Kinase Phosphoribosylaminoimidazole
           Carboxylase, Atpase Subunit From Burkholderia
           Thailandensis
          Length = 419

 Score = 29.6 bits (65), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 6/62 (9%)

Query: 100 YDLKGVVKLALAEDA----GDRGDVTCM--ATIPLDMEVEAHFLAKEDGIIAGIALAEMI 153
           YD KG V++A A++A    G  G V C+    +PL  EV A      +G  A   LA+  
Sbjct: 183 YDGKGQVRVATAQEARDAYGSLGGVPCVLEKRLPLKYEVSALIARGANGASAVFPLAQNT 242

Query: 154 FH 155
            H
Sbjct: 243 HH 244


>pdb|1E6Y|C Chain C, Methyl-Coenzyme M Reductase From Methanosarcina Barkeri
 pdb|1E6Y|F Chain F, Methyl-Coenzyme M Reductase From Methanosarcina Barkeri
          Length = 247

 Score = 28.1 bits (61), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 34/157 (21%), Positives = 57/157 (36%), Gaps = 19/157 (12%)

Query: 47  ASERALMPGILSISTLVWPHLCTNSRQVVKMSAT------GIRKPGFESPAIKLP----S 96
           A ER   PG  S++     H+     ++ ++S        G R PG + P+   P     
Sbjct: 1   AYERQYYPGATSVAANRRKHMSGKLEKLREISDEDLTAVLGHRAPGSDYPSTHPPLAEMG 60

Query: 97  HPTYDLKGVVKLALAEDAGDRGD----VTCMATIPLDMEVEAHFLA-----KEDGIIAGI 147
            P    +  V       AGDR         M   P      ++F A      + G ++G 
Sbjct: 61  EPAXSTRENVAATPGAAAGDRVRYIQFADSMYNAPATPYFRSYFAAINFRGVDPGTLSGR 120

Query: 148 ALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSG 184
            + E    +++   KV+   +  DH   G++   V G
Sbjct: 121 QIVEARERDMEQCAKVQMETEITDHALAGVRGATVHG 157


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.138    0.426 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,897,633
Number of Sequences: 62578
Number of extensions: 225142
Number of successful extensions: 505
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 499
Number of HSP's gapped (non-prelim): 12
length of query: 193
length of database: 14,973,337
effective HSP length: 93
effective length of query: 100
effective length of database: 9,153,583
effective search space: 915358300
effective search space used: 915358300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)