BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029418
(193 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P77938|NADC_RHORU Probable nicotinate-nucleotide pyrophosphorylase [carboxylating]
OS=Rhodospirillum rubrum GN=nadC PE=3 SV=1
Length = 296
Score = 64.7 bits (156), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 52/100 (52%), Gaps = 5/100 (5%)
Query: 95 PSHPT-----YDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIAL 149
P+HP + + V+ ALAED G GD+T ATIP A F+A++ GI+AG+
Sbjct: 3 PNHPVAALSPFAIDEAVRRALAEDLGRAGDITSTATIPAATRAHARFVARQPGILAGLGC 62
Query: 150 AEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGKPRKI 189
A F +D ++ L+DG + G +V+G R I
Sbjct: 63 ARSAFALLDDTVTFTTPLEDGAEIAAGQTVAEVAGAARTI 102
>sp|P30819|NADC_PSEAE Nicotinate-nucleotide pyrophosphorylase [carboxylating]
OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C
/ PRS 101 / LMG 12228) GN=nadC PE=3 SV=2
Length = 282
Score = 53.5 bits (127), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 50/100 (50%), Gaps = 6/100 (6%)
Query: 94 LPSHPTYDLKGV----VKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIAL 149
+P+ DL+G V+ ALAED G GD+T P E EA + +E IAG A
Sbjct: 1 MPNLTLADLQGEIQANVRTALAEDVGG-GDLTAQLIDP-QREAEARVITREHATIAGRAW 58
Query: 150 AEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGKPRKI 189
+ +F +VDP + V W ++DG V ++ G R +
Sbjct: 59 VDEVFRQVDPRVLVTWQVEDGQRVEPNQMLFQLKGPARAL 98
>sp|P74301|NADC_SYNY3 Probable nicotinate-nucleotide pyrophosphorylase [carboxylating]
OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=nadC
PE=3 SV=1
Length = 295
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 110 LAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKD 169
LAED G RGD + + L +A ++AKE+G+IAG+ +A IF +DPS++ + +
Sbjct: 29 LAEDIG-RGDWSTQG-LGLQHRGQARWVAKENGVIAGLPMAARIFQLLDPSMEFQVLAGE 86
Query: 170 GDHVHKGLQFGKVSGK 185
G V ++G
Sbjct: 87 GQAVTASTVVATMAGN 102
>sp|P30012|NADC_SALTY Nicotinate-nucleotide pyrophosphorylase [carboxylating]
OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC
700720) GN=nadC PE=1 SV=3
Length = 297
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Query: 101 DLKGVVKLALAEDAG---DRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEV 157
D+ V AL ED G D G+ +P D + A + +EDG+ G E +F ++
Sbjct: 22 DIPAAVAQALREDLGGEVDAGNDITAQLLPADTQAHATVITREDGVFCGKRWVEEVFIQL 81
Query: 158 -DPSLKVEWSLKDGDHVHKGLQFGKVSGKPR 187
+++ W + DGD +H +++G R
Sbjct: 82 AGDDVRLTWHVDDGDAIHANQTVFELNGPAR 112
>sp|P46714|NADC_MYCLE Nicotinate-nucleotide pyrophosphorylase [carboxylating]
OS=Mycobacterium leprae (strain TN) GN=nadC PE=3 SV=1
Length = 284
Score = 37.7 bits (86), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 103 KGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEV--DPS 160
+ ++ AL ED D+T AT+P V + +E G+IAG+ +A ++ EV
Sbjct: 11 RDTIRRALHEDLRYGLDITTQATVPAGTVVTGSMVPREPGVIAGVDVALLVLDEVFGVDG 70
Query: 161 LKVEWSLKDGDHVHKGLQFGKVSGKPRKI 189
+V + ++DG + G V R +
Sbjct: 71 YRVLYRVEDGARLQSGQPLLTVQAAARGL 99
>sp|A7SG73|NADC_NEMVE Nicotinate-nucleotide pyrophosphorylase [carboxylating] (Fragment)
OS=Nematostella vectensis GN=qprt PE=3 SV=1
Length = 289
Score = 37.7 bits (86), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 133 EAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGKPRKI 189
+A L K DG++AG+ IF ++D KVEW +GD + G V+G KI
Sbjct: 47 KAVLLCKSDGVLAGVPFFNAIFEKLD--CKVEWQNNEGDPIKAVSVIGTVTGPVNKI 101
>sp|P39666|NADC_BACSU Probable nicotinate-nucleotide pyrophosphorylase [carboxylating]
OS=Bacillus subtilis (strain 168) GN=nadC PE=1 SV=2
Length = 289
Score = 37.4 bits (85), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 102 LKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSL 161
LK ++ ED G GD+T +I + EA +AK +GI AG A+ + F +D ++
Sbjct: 6 LKKLLNHFFLEDIG-TGDLTSQ-SIFGEQSCEAEIVAKSEGIFAGAAIIKEGFSLLDENV 63
Query: 162 KVEWSLKDGDHVHKGLQFGKVSG 184
+ KDGD +HKG ++ G
Sbjct: 64 QSILHKKDGDMLHKGEVIAELHG 86
>sp|Q9CLU4|MODD_PASMU Putative pyrophosphorylase ModD OS=Pasteurella multocida (strain
Pm70) GN=modD PE=3 SV=1
Length = 282
Score = 36.2 bits (82), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 117 RGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKG 176
RGD+T A + E F K GI+AGI++AE + ++D +V +K+G+ V G
Sbjct: 19 RGDLTTHALGLESIPAEICFKRKNAGIVAGISIAEKLLRKLDIHPQV--YVKEGEFVEAG 76
Query: 177 LQFGKVSGKPRKINSFW 193
G K++ W
Sbjct: 77 SLLLSAKGSADKLHQAW 93
>sp|O27860|NADC_METTH Probable nicotinate-nucleotide pyrophosphorylase [carboxylating]
OS=Methanothermobacter thermautotrophicus (strain ATCC
29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
GN=nadC PE=3 SV=1
Length = 279
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 119 DVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQ 178
D+T A I V A +++E+G++AG+ +AEM+ E S+ + W DGD + G +
Sbjct: 17 DITTEALIDRGTRVVADIVSREEGVVAGVEVAEMMAREFSISI-IRWK-DDGDPLSGGER 74
Query: 179 FGKVSGKPRKI 189
+ G I
Sbjct: 75 VLTLEGDAMDI 85
>sp|O06594|NADC_MYCTU Nicotinate-nucleotide pyrophosphorylase [carboxylating]
OS=Mycobacterium tuberculosis GN=nadC PE=1 SV=1
Length = 285
Score = 35.8 bits (81), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 119 DVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEV--DPSLKVEWSLKDGDHVHKG 176
DVT +AT+P A + +E G++AG+ +A + +EV +V ++DG V G
Sbjct: 28 DVTTLATVPASATTTASLVTREAGVVAGLDVALLTLNEVLGTNGYRVLDRVEDGARVPPG 87
Query: 177 LQFGKVSGKPRKI 189
+ + R +
Sbjct: 88 EALMTLEAQTRGL 100
>sp|Q0BV22|MRAY_GRABC Phospho-N-acetylmuramoyl-pentapeptide-transferase OS=Granulibacter
bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=mraY
PE=3 SV=1
Length = 362
Score = 33.5 bits (75), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 40/99 (40%), Gaps = 6/99 (6%)
Query: 16 FPLFPGLLIW-QSSHSCGQVIIEALLSAHLIGASERALMPGIL-----SISTLVWPHLCT 69
F L P L+ W +S GQ I E HL+ M G+L ISTL+W L
Sbjct: 38 FLLGPALIRWLKSVQRGGQPIREDGPERHLLEKKGTPTMGGVLILAATGISTLLWTDLRN 97
Query: 70 NSRQVVKMSATGIRKPGFESPAIKLPSHPTYDLKGVVKL 108
V + G GF +KL T L G VKL
Sbjct: 98 GYVWAVLLLTLGYGGIGFADDYLKLSKRNTKGLPGRVKL 136
>sp|Q57278|MODD_HAEIN Putative pyrophosphorylase ModD OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=modD PE=3 SV=1
Length = 281
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Query: 117 RGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVD--PSLKVEWSLKDGDHVH 174
RGD+T A ++ + F K G++AG+++AE + ++D P L V K+G+ V
Sbjct: 19 RGDLTTHALSIENIPAKILFKRKNAGVVAGVSVAEKLLKKLDIQPHLYV----KEGEWVE 74
Query: 175 KGLQFGKVSGKPRKINSFW 193
G G +++ W
Sbjct: 75 SGALLISAEGMSEQLHQAW 93
>sp|Q75JX0|NADC_DICDI Nicotinate-nucleotide pyrophosphorylase [carboxylating]
OS=Dictyostelium discoideum GN=qprt PE=3 SV=1
Length = 300
Score = 33.1 bits (74), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 98 PTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEV 157
P + ++ ++K L ED C+ + D +V AH L K++G+ +G + IF+++
Sbjct: 8 PKFKIEKIIKEWLEEDIPSFDYGGCV--VGSDEKV-AHLLGKQNGVFSGSIFFQEIFNQL 64
Query: 158 DPSLKVEWSLKDGD 171
KV W +KDG+
Sbjct: 65 --GCKVIWFIKDGE 76
>sp|Q5WGS8|AROC_BACSK Chorismate synthase OS=Bacillus clausii (strain KSM-K16) GN=aroC
PE=3 SV=1
Length = 390
Score = 32.3 bits (72), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 32/70 (45%)
Query: 123 MATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKV 182
+A +P+ + H+ K DG IAG ++ F V+ + E + G VH + + +
Sbjct: 224 VAGVPIGLGSHVHYDRKLDGKIAGAVMSINAFKGVEIGIGFEAARLPGSQVHDEITWSEE 283
Query: 183 SGKPRKINSF 192
G RK N
Sbjct: 284 EGYKRKTNRL 293
>sp|Q8D6Q0|ALR2_VIBVU Alanine racemase 2 OS=Vibrio vulnificus (strain CMCP6) GN=alr2 PE=3
SV=1
Length = 408
Score = 32.0 bits (71), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 7/99 (7%)
Query: 28 SHSCGQVIIEALLSAHLIGASERALMPGILSISTLVWPHLCTNSRQVVKMSATGIRKPGF 87
SH Q I A++ A G R LMP IL P + S K+ +R+ GF
Sbjct: 62 SHIAPQTKICAVMKADAYGNGIRGLMPTILEQQI---PCVAIASNAEAKL----VRESGF 114
Query: 88 ESPAIKLPSHPTYDLKGVVKLALAEDAGDRGDVTCMATI 126
E I++ S T +++ + L + E G +A++
Sbjct: 115 EGELIRVRSASTSEIEQALSLDIEELIGSEQQARELASL 153
>sp|O28439|NADC_ARCFU Probable nicotinate-nucleotide pyrophosphorylase [carboxylating]
OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 /
DSM 4304 / JCM 9628 / NBRC 100126) GN=nadC PE=3 SV=1
Length = 258
Score = 32.0 bits (71), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 118 GDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGL 177
GDVT + T +VEA ++K +G++AG+ + +++F + + V S KDG+ + G
Sbjct: 4 GDVTAIPT----KDVEAVIVSKGEGVLAGVGVVKILFDLAE--IVVMESKKDGEPIKPGD 57
Query: 178 QFGKVSGKPRKI 189
++ GK I
Sbjct: 58 VVMRLRGKSDSI 69
>sp|O13986|YEG4_SCHPO Uncharacterized protein C26H5.04 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC26H5.04 PE=4 SV=3
Length = 789
Score = 32.0 bits (71), Expect = 2.9, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 52 LMPGILSISTLVWPHLCTNSRQVVKMSATGIRKPGFESPAIKLPSHPTYDLKGVVKLAL 110
L+ GI ++WP CT+ Q K A+ ++ GF L +H + D++ VK AL
Sbjct: 724 LLAGIWLCINILWPKQCTSPSQEDKERASILQNLGFGECLQMLQNHSSPDVRERVKDAL 782
>sp|A8MH14|AROC_ALKOO Chorismate synthase OS=Alkaliphilus oremlandii (strain OhILAs)
GN=aroC PE=3 SV=1
Length = 384
Score = 30.8 bits (68), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
Query: 97 HPTYDLKGVVKLALAEDAGDR-GDV--TCMATIPLDMEVEAHFLAKEDGIIAGIALAEMI 153
+PT + + + ++ A++ GD G V + +P+ + AHF K DGI+A ++
Sbjct: 189 NPTIEERMMGEIQRAKETGDSLGGVFEVIVRNVPIGIGSYAHFDRKLDGILAQGLMSLQA 248
Query: 154 FHEVDPSLKVEWSLKDGDHVHKGLQFGKVSG 184
V+ +E S K G H +++ + G
Sbjct: 249 IKAVEIGNGIEGSSKMGSQFHDEIKYSEAKG 279
>sp|A8FY28|RNH2_SHESH Ribonuclease HII OS=Shewanella sediminis (strain HAW-EB3) GN=rnhB
PE=3 SV=1
Length = 213
Score = 30.4 bits (67), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 129 DMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGKPRK 188
D +E+H + K DG++AGI+ A ++ + E L D +H G F K G P K
Sbjct: 130 DRNIESHAIIKGDGLVAGISAASIVAKVIRDR---EMDLLDMEHPQYG--FAKHKGYPTK 184
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.138 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,186,183
Number of Sequences: 539616
Number of extensions: 2853250
Number of successful extensions: 8131
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 8118
Number of HSP's gapped (non-prelim): 24
length of query: 193
length of database: 191,569,459
effective HSP length: 111
effective length of query: 82
effective length of database: 131,672,083
effective search space: 10797110806
effective search space used: 10797110806
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)