Query 029418
Match_columns 193
No_of_seqs 124 out of 1140
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 12:35:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029418.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029418hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02716 nicotinate-nucleotide 99.9 9E-23 2E-27 182.5 12.7 105 88-193 5-110 (308)
2 COG0157 NadC Nicotinate-nucleo 99.9 4.9E-23 1.1E-27 182.1 10.6 95 98-193 2-96 (280)
3 PRK06106 nicotinate-nucleotide 99.9 2E-22 4.3E-27 178.2 12.1 96 97-193 6-102 (281)
4 PRK07428 nicotinate-nucleotide 99.9 3.6E-22 7.8E-27 176.8 11.5 98 95-193 5-104 (288)
5 PRK06543 nicotinate-nucleotide 99.9 4.1E-22 8.8E-27 176.3 11.6 96 97-193 2-97 (281)
6 PRK06559 nicotinate-nucleotide 99.9 6.7E-22 1.4E-26 175.7 11.9 101 92-193 3-105 (290)
7 PRK06978 nicotinate-nucleotide 99.9 8.7E-22 1.9E-26 175.3 11.3 97 94-193 18-114 (294)
8 PRK08072 nicotinate-nucleotide 99.9 1.7E-21 3.6E-26 171.6 11.2 93 100-193 4-96 (277)
9 PRK07896 nicotinate-nucleotide 99.9 3.2E-21 7E-26 171.1 12.0 103 90-193 3-108 (289)
10 TIGR01334 modD putative molybd 99.9 2E-21 4.4E-26 171.3 10.2 90 101-193 3-92 (277)
11 PRK06096 molybdenum transport 99.9 2.9E-21 6.3E-26 170.9 10.3 89 102-193 5-93 (284)
12 PRK05742 nicotinate-nucleotide 99.8 4.7E-21 1E-25 168.8 11.3 92 100-193 7-98 (277)
13 cd01572 QPRTase Quinolinate ph 99.8 4.8E-21 1E-25 167.4 10.7 89 104-193 2-90 (268)
14 PF02749 QRPTase_N: Quinolinat 99.8 1.2E-21 2.6E-26 145.0 5.8 77 114-193 1-77 (88)
15 PRK09016 quinolinate phosphori 99.8 1.6E-20 3.4E-25 167.3 11.3 92 100-193 21-117 (296)
16 cd01573 modD_like ModD; Quinol 99.8 1.1E-20 2.4E-25 165.4 10.1 87 104-193 2-88 (272)
17 cd01568 QPRTase_NadC Quinolina 99.8 1.5E-20 3.3E-25 163.8 10.1 88 104-193 2-89 (269)
18 PRK08385 nicotinate-nucleotide 99.8 2.5E-20 5.5E-25 164.5 10.6 87 104-193 4-90 (278)
19 TIGR00078 nadC nicotinate-nucl 99.8 2.9E-20 6.4E-25 162.4 9.7 86 105-193 1-86 (265)
20 PRK05848 nicotinate-nucleotide 99.8 5E-20 1.1E-24 162.1 10.8 89 101-193 2-90 (273)
21 KOG3008 Quinolinate phosphorib 99.7 9.4E-17 2E-21 140.5 5.2 100 87-193 4-103 (300)
22 PRK08662 nicotinate phosphorib 99.5 9.8E-14 2.1E-18 125.5 6.5 85 103-193 9-101 (343)
23 cd00516 PRTase_typeII Phosphor 99.1 1.9E-10 4.1E-15 99.2 7.7 75 119-193 1-82 (281)
24 cd01571 NAPRTase_B Nicotinate 99.0 1.2E-10 2.6E-15 103.6 3.0 73 118-193 8-84 (302)
25 PRK07188 nicotinate phosphorib 98.8 1.1E-08 2.4E-13 93.5 8.1 66 128-193 35-103 (352)
26 PF13533 Biotin_lipoyl_2: Biot 94.0 0.054 1.2E-06 36.2 2.7 24 163-186 14-37 (50)
27 cd01570 NAPRTase_A Nicotinate 92.7 0.21 4.5E-06 45.3 5.2 64 129-193 22-118 (327)
28 PRK09243 nicotinate phosphorib 91.1 0.33 7.2E-06 46.2 4.8 66 127-193 29-127 (464)
29 PF00364 Biotin_lipoyl: Biotin 90.7 0.24 5.3E-06 35.2 2.7 23 163-185 18-40 (74)
30 PRK05889 putative acetyl-CoA c 90.2 0.39 8.4E-06 33.7 3.4 24 162-185 13-36 (71)
31 PRK06748 hypothetical protein; 90.2 0.37 8E-06 36.2 3.4 23 162-184 15-37 (83)
32 PF07831 PYNP_C: Pyrimidine nu 88.6 0.72 1.6E-05 33.6 3.9 32 157-188 28-59 (75)
33 cd01567 NAPRTase_PncB Nicotina 87.8 1.2 2.6E-05 40.1 5.6 63 129-191 21-115 (343)
34 TIGR02644 Y_phosphoryl pyrimid 86.4 4.4 9.4E-05 38.4 8.6 62 129-190 329-403 (405)
35 PRK08225 acetyl-CoA carboxylas 85.5 1.2 2.5E-05 31.0 3.4 23 163-185 13-35 (70)
36 cd06850 biotinyl_domain The bi 84.7 1.3 2.7E-05 29.2 3.1 23 162-184 9-32 (67)
37 PRK05820 deoA thymidine phosph 81.3 4.8 0.0001 38.6 6.7 59 129-187 336-407 (440)
38 COG0213 DeoA Thymidine phospho 80.0 5.4 0.00012 38.3 6.5 60 129-188 332-404 (435)
39 COG0511 AccB Biotin carboxyl c 79.9 2.1 4.5E-05 34.4 3.3 19 165-183 84-102 (140)
40 cd06850 biotinyl_domain The bi 79.7 5 0.00011 26.3 4.6 33 132-182 35-67 (67)
41 KOG0557 Dihydrolipoamide acety 77.9 1.8 3.9E-05 41.8 2.7 25 162-186 55-79 (470)
42 TIGR02643 T_phosphoryl thymidi 77.8 6.8 0.00015 37.6 6.5 59 129-187 335-406 (437)
43 TIGR02645 ARCH_P_rylase putati 77.7 7.3 0.00016 37.9 6.8 60 130-189 410-475 (493)
44 cd06663 Biotinyl_lipoyl_domain 77.3 4.3 9.4E-05 27.9 3.9 24 162-185 16-39 (73)
45 PF10011 DUF2254: Predicted me 75.7 17 0.00038 33.3 8.4 48 134-183 196-245 (371)
46 PTZ00144 dihydrolipoamide succ 75.2 3.2 6.9E-05 39.4 3.5 25 161-185 60-84 (418)
47 PRK08225 acetyl-CoA carboxylas 74.7 3.5 7.6E-05 28.5 2.8 21 163-183 50-70 (70)
48 PRK05641 putative acetyl-CoA c 74.4 3.7 8E-05 33.8 3.3 22 164-185 97-118 (153)
49 PRK04350 thymidine phosphoryla 74.4 10 0.00022 36.9 6.7 61 129-189 401-467 (490)
50 TIGR03327 AMP_phos AMP phospho 74.2 12 0.00026 36.6 7.2 60 129-188 410-475 (500)
51 TIGR01843 type_I_hlyD type I s 73.9 2.1 4.5E-05 38.0 1.9 36 150-186 43-78 (423)
52 PRK06078 pyrimidine-nucleoside 73.7 20 0.00043 34.4 8.5 58 129-186 331-401 (434)
53 TIGR00830 PTBA PTS system, glu 73.4 3.8 8.3E-05 32.6 3.1 22 162-183 81-102 (121)
54 PF12700 HlyD_2: HlyD family s 72.5 3.7 8E-05 35.1 3.0 24 162-185 31-54 (328)
55 PLN02226 2-oxoglutarate dehydr 71.3 4.4 9.5E-05 39.0 3.5 25 161-185 107-131 (463)
56 cd00210 PTS_IIA_glc PTS_IIA, P 70.5 4.9 0.00011 32.1 3.1 22 162-183 81-102 (124)
57 cd06848 GCS_H Glycine cleavage 70.1 12 0.00027 27.7 5.0 41 143-186 16-56 (96)
58 PRK06549 acetyl-CoA carboxylas 69.5 5.8 0.00013 32.0 3.4 21 164-184 74-94 (130)
59 TIGR00998 8a0101 efflux pump m 68.0 4.9 0.00011 35.0 2.9 22 164-185 55-76 (334)
60 PRK10476 multidrug resistance 66.9 5.3 0.00011 35.5 2.9 23 163-185 60-82 (346)
61 PRK15136 multidrug efflux syst 66.9 5.6 0.00012 36.5 3.1 23 163-185 73-95 (390)
62 PRK10559 p-hydroxybenzoic acid 66.6 5.3 0.00012 35.5 2.9 23 163-185 59-81 (310)
63 PRK09439 PTS system glucose-sp 66.5 6.5 0.00014 33.0 3.2 22 162-183 103-124 (169)
64 PRK03598 putative efflux pump 66.1 4.5 9.8E-05 35.7 2.3 23 163-185 55-77 (331)
65 PF00358 PTS_EIIA_1: phosphoen 64.7 5.6 0.00012 32.0 2.4 22 162-183 85-106 (132)
66 PLN02983 biotin carboxyl carri 63.4 5.8 0.00012 36.0 2.4 22 164-185 217-238 (274)
67 PRK12484 nicotinate phosphorib 63.3 16 0.00035 34.8 5.6 56 132-188 28-116 (443)
68 PRK07051 hypothetical protein; 63.0 10 0.00022 27.2 3.3 20 164-183 60-79 (80)
69 PF13375 RnfC_N: RnfC Barrel s 62.5 5.8 0.00013 30.5 2.0 25 161-185 40-64 (101)
70 COG2190 NagE Phosphotransferas 62.1 8 0.00017 32.4 2.9 22 162-183 88-109 (156)
71 TIGR01000 bacteriocin_acc bact 61.4 6.6 0.00014 36.6 2.6 53 132-185 41-93 (457)
72 TIGR01730 RND_mfp RND family e 60.8 7.4 0.00016 33.1 2.6 22 164-185 39-60 (322)
73 PRK07051 hypothetical protein; 59.8 9.3 0.0002 27.4 2.6 22 164-185 23-44 (80)
74 TIGR00531 BCCP acetyl-CoA carb 59.2 8 0.00017 31.7 2.4 23 162-184 98-120 (156)
75 COG0511 AccB Biotin carboxyl c 58.9 8.8 0.00019 30.8 2.6 23 161-183 117-139 (140)
76 TIGR03794 NHPM_micro_HlyD NHPM 58.8 8.2 0.00018 35.4 2.7 23 163-185 70-92 (421)
77 TIGR01513 NAPRTase_put putativ 58.2 16 0.00036 34.8 4.7 58 131-188 24-113 (443)
78 PRK11854 aceF pyruvate dehydro 57.6 9.1 0.0002 37.7 2.9 24 162-185 221-244 (633)
79 TIGR02927 SucB_Actino 2-oxoglu 56.2 12 0.00026 36.8 3.4 25 161-185 151-175 (590)
80 PLN02744 dihydrolipoyllysine-r 55.9 11 0.00024 37.0 3.1 24 162-185 129-152 (539)
81 PRK06302 acetyl-CoA carboxylas 55.5 9.4 0.0002 31.2 2.3 23 162-184 97-119 (155)
82 COG0845 AcrA Membrane-fusion p 55.3 12 0.00025 31.4 2.8 25 160-184 75-99 (372)
83 PRK11578 macrolide transporter 55.1 11 0.00025 33.7 2.9 21 164-184 74-94 (370)
84 PF05896 NQRA: Na(+)-transloca 55.1 10 0.00022 34.0 2.6 22 161-182 39-60 (257)
85 PRK11855 dihydrolipoamide acet 54.6 13 0.00028 36.0 3.3 26 161-186 134-159 (547)
86 PRK09578 periplasmic multidrug 54.5 12 0.00026 33.9 2.9 21 164-184 76-96 (385)
87 TIGR01108 oadA oxaloacetate de 54.5 13 0.00028 36.6 3.4 23 162-184 528-550 (582)
88 PRK09859 multidrug efflux syst 54.5 12 0.00025 34.0 2.9 22 164-185 74-95 (385)
89 TIGR01348 PDHac_trf_long pyruv 54.4 11 0.00024 36.5 2.9 25 161-185 131-155 (546)
90 PF00364 Biotin_lipoyl: Biotin 54.0 12 0.00027 26.4 2.4 35 130-182 40-74 (74)
91 PRK15030 multidrug efflux syst 53.9 12 0.00026 34.2 2.9 21 164-184 78-98 (397)
92 PRK11556 multidrug efflux syst 53.4 12 0.00027 34.5 2.9 22 164-185 100-121 (415)
93 cd03522 MoeA_like MoeA_like. T 51.5 59 0.0013 29.6 6.9 77 96-183 52-128 (312)
94 PRK05889 putative acetyl-CoA c 50.4 21 0.00046 24.8 3.1 19 164-182 52-70 (71)
95 PLN02226 2-oxoglutarate dehydr 50.0 5.9 0.00013 38.2 0.3 72 91-184 93-167 (463)
96 cd06849 lipoyl_domain Lipoyl d 49.1 29 0.00062 21.9 3.4 22 163-184 18-39 (74)
97 PRK14042 pyruvate carboxylase 48.6 19 0.00042 35.7 3.5 24 162-185 536-559 (596)
98 PRK09783 copper/silver efflux 45.4 19 0.00042 33.3 2.9 21 165-185 137-158 (409)
99 PRK14040 oxaloacetate decarbox 45.1 22 0.00047 35.2 3.3 24 162-185 535-558 (593)
100 PRK06748 hypothetical protein; 43.4 30 0.00066 25.9 3.2 34 132-183 41-74 (83)
101 PF01551 Peptidase_M23: Peptid 42.2 25 0.00054 25.3 2.5 20 166-185 56-75 (96)
102 TIGR02712 urea_carbox urea car 41.1 26 0.00057 37.4 3.4 24 162-185 1143-1166(1201)
103 PRK01202 glycine cleavage syst 40.8 58 0.0013 25.7 4.6 40 143-185 24-63 (127)
104 COG1488 PncB Nicotinic acid ph 40.4 31 0.00068 32.5 3.5 84 103-189 8-125 (405)
105 TIGR01995 PTS-II-ABC-beta PTS 40.0 26 0.00055 34.7 2.9 22 162-183 545-566 (610)
106 COG1566 EmrA Multidrug resista 38.1 32 0.00069 32.1 3.1 23 161-183 63-85 (352)
107 PRK10255 PTS system N-acetyl g 37.7 28 0.00061 35.0 2.9 21 163-183 582-602 (648)
108 TIGR03077 not_gcvH glycine cle 37.0 79 0.0017 24.7 4.7 41 142-185 16-56 (110)
109 PRK09824 PTS system beta-gluco 37.0 29 0.00063 34.7 2.8 22 162-183 561-582 (627)
110 TIGR00531 BCCP acetyl-CoA carb 35.9 37 0.0008 27.8 2.8 22 162-183 135-156 (156)
111 cd06254 M14_ASTE_ASPA_like_4 A 35.0 44 0.00095 29.4 3.4 22 163-184 234-255 (288)
112 PRK06302 acetyl-CoA carboxylas 35.0 39 0.00085 27.5 2.8 22 162-183 134-155 (155)
113 TIGR01235 pyruv_carbox pyruvat 33.5 46 0.001 35.5 3.7 23 162-184 1085-1107(1143)
114 PRK09282 pyruvate carboxylase 32.8 44 0.00096 33.0 3.3 22 163-184 534-555 (592)
115 KOG0559 Dihydrolipoamide succi 32.0 34 0.00074 32.9 2.3 71 91-184 74-148 (457)
116 PRK11854 aceF pyruvate dehydro 31.8 94 0.002 30.8 5.4 40 128-185 38-77 (633)
117 cd06255 M14_ASTE_ASPA_like_5 A 31.8 53 0.0011 29.1 3.4 25 163-187 242-266 (293)
118 PRK00624 glycine cleavage syst 31.4 1.1E+02 0.0024 24.0 4.8 41 142-185 18-58 (114)
119 cd06251 M14_ASTE_ASPA_like_1 A 30.6 57 0.0012 28.7 3.4 23 163-185 230-252 (287)
120 TIGR03309 matur_yqeB selenium- 30.3 50 0.0011 29.7 3.0 23 162-184 174-196 (256)
121 PF01597 GCV_H: Glycine cleava 30.0 1.1E+02 0.0025 23.8 4.6 39 144-185 19-57 (122)
122 PRK05641 putative acetyl-CoA c 28.3 65 0.0014 26.5 3.1 20 163-182 133-152 (153)
123 TIGR01936 nqrA NADH:ubiquinone 28.0 35 0.00075 32.7 1.7 26 161-186 39-64 (447)
124 PRK06549 acetyl-CoA carboxylas 27.8 63 0.0014 26.0 2.9 19 164-182 111-129 (130)
125 PRK10871 nlpD lipoprotein NlpD 27.1 42 0.00092 31.0 2.0 19 165-183 272-290 (319)
126 cd06253 M14_ASTE_ASPA_like_3 A 26.9 65 0.0014 28.7 3.1 23 163-185 240-262 (298)
127 cd06252 M14_ASTE_ASPA_like_2 A 26.5 74 0.0016 28.5 3.4 24 163-186 255-278 (316)
128 TIGR01730 RND_mfp RND family e 26.1 96 0.0021 26.3 3.9 38 132-187 133-170 (322)
129 TIGR02994 ectoine_eutE ectoine 25.9 74 0.0016 28.9 3.3 21 164-184 267-287 (325)
130 PRK13380 glycine cleavage syst 24.4 1.3E+02 0.0028 24.5 4.1 47 136-185 22-70 (144)
131 cd06250 M14_PaAOTO_like An unc 24.2 84 0.0018 28.9 3.4 23 163-185 300-322 (359)
132 PF13437 HlyD_3: HlyD family s 24.1 1.1E+02 0.0023 22.0 3.4 21 165-185 13-33 (105)
133 PF09891 DUF2118: Uncharacteri 23.8 83 0.0018 26.2 2.9 24 161-184 90-113 (150)
134 TIGR00998 8a0101 efflux pump m 22.4 1.3E+02 0.0029 26.1 4.1 36 132-185 203-238 (334)
135 PRK05352 Na(+)-translocating N 22.1 53 0.0011 31.4 1.7 26 161-186 40-65 (448)
136 PRK12999 pyruvate carboxylase; 21.8 89 0.0019 33.4 3.4 23 162-184 1087-1109(1146)
137 TIGR01945 rnfC electron transp 21.1 49 0.0011 31.1 1.2 25 161-185 41-65 (435)
138 COG4770 Acetyl/propionyl-CoA c 21.1 1.1E+02 0.0024 31.0 3.6 25 160-184 584-608 (645)
139 COG0739 NlpD Membrane proteins 20.8 67 0.0015 26.8 1.9 19 164-182 215-233 (277)
140 PF11918 DUF3436: Domain of un 20.6 2E+02 0.0044 20.3 3.9 44 67-113 11-54 (55)
141 COG1038 PycA Pyruvate carboxyl 20.3 82 0.0018 33.4 2.7 26 159-184 1087-1112(1149)
142 PRK14875 acetoin dehydrogenase 20.1 1.2E+02 0.0026 26.1 3.3 36 130-183 42-77 (371)
No 1
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=99.89 E-value=9e-23 Score=182.53 Aligned_cols=105 Identities=68% Similarity=1.041 Sum_probs=100.0
Q ss_pred CCCCcCCCCCChhhHHHHHHHHHhhhcC-CCCCccCccccCCCcEEEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEE
Q 029418 88 ESPAIKLPSHPTYDLKGVVKLALAEDAG-DRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWS 166 (193)
Q Consensus 88 ~~~~~~~p~~p~~~L~~~I~~aL~EDig-~~GDlTT~ali~~d~~akA~IiAKEdGVlAGl~va~~IF~~ldp~leve~~ 166 (193)
..+.+.++.+|+..+++.|++||+||+| + ||+||.++++++..++++|+|||+||+||++++.++|+.+|++++++|+
T Consensus 5 ~~~~~~~~~~~~~~~~~~i~~~L~ED~~~~-gDlTt~~~~~~~~~~~a~i~ake~gvlaG~~~a~~vf~~l~~~~~v~~~ 83 (308)
T PLN02716 5 MAMAIPPPSHPTYDIEAVIKLALAEDAGDR-GDVTCLATIPGDMEAEATFLAKADGVLAGIALADMVFEEVDPSLKVEWA 83 (308)
T ss_pred cccccccccCChHHHHHHHHHHHHHhCCCC-CCCCcccccCCCCeEEEEEEeCCCEEEECHHHHHHHHHHcCCCeEEEEE
Confidence 3567788889988899999999999999 6 9999999999999999999999999999999999999999999999999
Q ss_pred cCCCCeeecCCEEEEEEeChhhhcccC
Q 029418 167 LKDGDHVHKGLQFGKVSGKPRKINSFW 193 (193)
Q Consensus 167 v~DGd~V~kGdvIleV~G~ArsLL~aE 193 (193)
++||+.|++|++|++++|++++||++|
T Consensus 84 ~~dG~~v~~G~~i~~v~G~a~~il~~E 110 (308)
T PLN02716 84 AIDGDFVHKGLKFGKVTGPAHSILVAE 110 (308)
T ss_pred eCCCCEecCCCEEEEEEECHHHHHHHH
Confidence 999999999999999999999999987
No 2
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=99.89 E-value=4.9e-23 Score=182.14 Aligned_cols=95 Identities=38% Similarity=0.645 Sum_probs=91.8
Q ss_pred ChhhHHHHHHHHHhhhcCCCCCccCccccCCCcEEEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeecCC
Q 029418 98 PTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGL 177 (193)
Q Consensus 98 p~~~L~~~I~~aL~EDig~~GDlTT~ali~~d~~akA~IiAKEdGVlAGl~va~~IF~~ldp~leve~~v~DGd~V~kGd 177 (193)
+...+++.|+.||.||+|+ ||+||.++++++.++++.+++||+||+||+++++++|+++|++++++|+++||+++++|+
T Consensus 2 ~~~~~~~~v~~~L~ED~g~-gDiTt~al~~~~~~a~a~i~ake~GvvaG~~~a~~~f~~l~~~i~~~~~~~DG~~v~~g~ 80 (280)
T COG0157 2 PILLIDDLVDAALLEDLGR-GDITTEALIPEDRKAEAVIIAKEAGVVAGLDVAEEVFELLGPSIEIQWLVKDGDRVKPGD 80 (280)
T ss_pred chhhHHHHHHHHHHhhcCC-CCcccccccCCCCeEEEEEEEcCCcEEEcHHHHHHHHHHhCCceEEEEEcCCCCEeCCCC
Confidence 4567899999999999997 999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeChhhhcccC
Q 029418 178 QFGKVSGKPRKINSFW 193 (193)
Q Consensus 178 vIleV~G~ArsLL~aE 193 (193)
+|++++|++++||++|
T Consensus 81 ~i~~~~G~a~~lL~~E 96 (280)
T COG0157 81 VLAEIEGPARALLTAE 96 (280)
T ss_pred EEEEEeccHHHHHHHH
Confidence 9999999999999987
No 3
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=99.88 E-value=2e-22 Score=178.18 Aligned_cols=96 Identities=34% Similarity=0.541 Sum_probs=92.2
Q ss_pred CChhhHHHHHHHHHhhhcC-CCCCccCccccCCCcEEEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeec
Q 029418 97 HPTYDLKGVVKLALAEDAG-DRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHK 175 (193)
Q Consensus 97 ~p~~~L~~~I~~aL~EDig-~~GDlTT~ali~~d~~akA~IiAKEdGVlAGl~va~~IF~~ldp~leve~~v~DGd~V~k 175 (193)
++++.++++|++||+||+| + ||+||+++++++..++++++|||+||+||+++++++|+++|++++++|+++||+.+++
T Consensus 6 ~~~~~~~~~i~~~l~ED~~~~-gDlTt~~l~~~~~~~~~~i~ake~gv~aG~~~a~~vf~~~~~~~~~~~~~~dG~~v~~ 84 (281)
T PRK06106 6 LPRLMLEPLVRAALLEDLGRA-GDITSDAIVPADHRATVVLVARQPGVIAGLDLARLAFRLVDPEIEMRRHLPDGAAVAP 84 (281)
T ss_pred CCHHHHHHHHHHHHHHHCCCC-CCCCcccccCCCCeEEEEEEecCCeEEECHHHHHHHHHHhCCceEEEEEeCCCCEEcC
Confidence 6666799999999999999 6 9999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEEeChhhhcccC
Q 029418 176 GLQFGKVSGKPRKINSFW 193 (193)
Q Consensus 176 GdvIleV~G~ArsLL~aE 193 (193)
|++|++++|++++||++|
T Consensus 85 g~~i~~i~G~a~~ll~~E 102 (281)
T PRK06106 85 GDVIATISGPARGLLTAE 102 (281)
T ss_pred CCEEEEEEECHHHHHHHH
Confidence 999999999999999987
No 4
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=99.87 E-value=3.6e-22 Score=176.84 Aligned_cols=98 Identities=26% Similarity=0.379 Sum_probs=91.2
Q ss_pred CCCChhh-HHHHHHHHHhhhcCCCCCccCccccCCC-cEEEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCe
Q 029418 95 PSHPTYD-LKGVVKLALAEDAGDRGDVTCMATIPLD-MEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDH 172 (193)
Q Consensus 95 p~~p~~~-L~~~I~~aL~EDig~~GDlTT~ali~~d-~~akA~IiAKEdGVlAGl~va~~IF~~ldp~leve~~v~DGd~ 172 (193)
.++|+.. +++.|++||+||+|+ ||+||+++++++ ..++++|+|||+||+||+++++++|+.+|++++++++++||+.
T Consensus 5 ~~~~~~~~~~~~i~~~l~ED~~~-~DlTt~~~~~~~~~~~~~~i~ar~~gv~~G~~~a~~i~~~~~~~~~~~~~~~dG~~ 83 (288)
T PRK07428 5 AMLPPWLVLDPLLQQWLREDIGR-GDRTTQGLLLEDATTGQAKWIAKESGVIAGLPIAARVFQLLDPQVSFTPLVAEGAA 83 (288)
T ss_pred ccCCcchhHHHHHHHHHHhcCCC-CCCCcccccCCCCcEEEEEEEecCCeEEECHHHHHHHHHHcCCcEEEEEEcCCCCE
Confidence 4455544 789999999999997 999999998888 8999999999999999999999999999988999999999999
Q ss_pred eecCCEEEEEEeChhhhcccC
Q 029418 173 VHKGLQFGKVSGKPRKINSFW 193 (193)
Q Consensus 173 V~kGdvIleV~G~ArsLL~aE 193 (193)
|++|++|++++|++++||++|
T Consensus 84 v~~g~~i~~~~G~a~~ll~~e 104 (288)
T PRK07428 84 CESGQVVAEIEGPLDALLMGE 104 (288)
T ss_pred ecCCCEEEEEEEcHHHHHHHH
Confidence 999999999999999999987
No 5
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=99.87 E-value=4.1e-22 Score=176.28 Aligned_cols=96 Identities=31% Similarity=0.472 Sum_probs=91.5
Q ss_pred CChhhHHHHHHHHHhhhcCCCCCccCccccCCCcEEEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeecC
Q 029418 97 HPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKG 176 (193)
Q Consensus 97 ~p~~~L~~~I~~aL~EDig~~GDlTT~ali~~d~~akA~IiAKEdGVlAGl~va~~IF~~ldp~leve~~v~DGd~V~kG 176 (193)
+....+++.|++||+||+|+ ||+||.++++++..++++++|||+||+||++++.++|+.+|++++++|+++||+.+++|
T Consensus 2 ~~~~~~~~~i~~~l~ED~~~-gDlTt~~l~~~~~~~~a~i~are~gvlaG~~~a~~if~~~~~~~~v~~~~~dG~~v~~G 80 (281)
T PRK06543 2 LTSHIIDRIVEAALAEDAPW-GDITSETLIPASATASAHLTAREPGVFSGIDVFAAAFRLVDPAITVTLAVADGERFEAG 80 (281)
T ss_pred CChHHHHHHHHHHHHhCCCC-CCCCccccCCCCCeEEEEEEecCCeEEECHHHHHHHHHHhCCCeEEEEEeCCCCEecCC
Confidence 44566899999999999997 99999999988999999999999999999999999999999889999999999999999
Q ss_pred CEEEEEEeChhhhcccC
Q 029418 177 LQFGKVSGKPRKINSFW 193 (193)
Q Consensus 177 dvIleV~G~ArsLL~aE 193 (193)
++|++++|++++||++|
T Consensus 81 ~~i~~~~G~a~~ll~~e 97 (281)
T PRK06543 81 DILATVTGPARSVLTAE 97 (281)
T ss_pred CEEEEEEecHHHHHHHH
Confidence 99999999999999987
No 6
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=99.87 E-value=6.7e-22 Score=175.66 Aligned_cols=101 Identities=23% Similarity=0.336 Sum_probs=95.3
Q ss_pred cCCCCCChhhHHHHHHHHHhhhcCCCCCccCccccCCCcEEEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEc--CC
Q 029418 92 IKLPSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSL--KD 169 (193)
Q Consensus 92 ~~~p~~p~~~L~~~I~~aL~EDig~~GDlTT~ali~~d~~akA~IiAKEdGVlAGl~va~~IF~~ldp~leve~~v--~D 169 (193)
+.-..+++..++++|++||+||+|+ ||+||.++++++..++++++|||+||+||+++++++|+.+|++++++|++ +|
T Consensus 3 ~~~~~~~~~~~~~~i~~~l~ED~~~-gDlTt~~l~~~~~~~~~~~~are~gvlaG~~~a~~if~~l~~~~~~~~~~~~~d 81 (290)
T PRK06559 3 IISTDLTPFQIDDTLKAALREDVHS-EDYSTNAIFDHHGQAKVSLFAKEAGVLAGLTVFQRVFTLFDAEVTFQNPHQFKD 81 (290)
T ss_pred ccccCCCHHHHHHHHHHHHHhcCCC-CCCCccccCCCCCeEEEEEEecCCeEEECHHHHHHHHHHhCCcEEEEEeecCCC
Confidence 4456678778999999999999997 99999999999999999999999999999999999999999999999998 99
Q ss_pred CCeeecCCEEEEEEeChhhhcccC
Q 029418 170 GDHVHKGLQFGKVSGKPRKINSFW 193 (193)
Q Consensus 170 Gd~V~kGdvIleV~G~ArsLL~aE 193 (193)
|+++++|++|++++|++++||++|
T Consensus 82 G~~v~~G~~i~~v~G~a~~ll~~E 105 (290)
T PRK06559 82 GDRLTSGDLVLEIIGSVRSLLTCE 105 (290)
T ss_pred CCEecCCCEEEEEEECHHHHHHHH
Confidence 999999999999999999999987
No 7
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=99.87 E-value=8.7e-22 Score=175.26 Aligned_cols=97 Identities=24% Similarity=0.441 Sum_probs=90.6
Q ss_pred CCCCChhhHHHHHHHHHhhhcCCCCCccCccccCCCcEEEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCee
Q 029418 94 LPSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHV 173 (193)
Q Consensus 94 ~p~~p~~~L~~~I~~aL~EDig~~GDlTT~ali~~d~~akA~IiAKEdGVlAGl~va~~IF~~ldp~leve~~v~DGd~V 173 (193)
...+|.. ++++|++||+||+|+ ||+|| .+++++..+++.++|||+||+||+++++++|+.+|++++++++++||+.|
T Consensus 18 ~~~~~~~-~~~~i~~~L~ED~~~-gDlTt-~~~~~~~~~~a~i~are~gvlaG~~~a~~if~~l~~~~~v~~~~~dG~~v 94 (294)
T PRK06978 18 GAAFDAA-IARNVADAIAEDVGS-GDQTG-RLVPAGEPRRARVIVREEAVLCGVPWFDAVMRAVDPSIEVTWRYREGDRM 94 (294)
T ss_pred cccchHH-HHHHHHHHHHhcCCC-CCCCc-cccCCCceEEEEEEEcCCEEEECHHHHHHHHHHhCCCeEEEEEcCCCCEe
Confidence 4456655 899999999999997 99999 56778889999999999999999999999999999899999999999999
Q ss_pred ecCCEEEEEEeChhhhcccC
Q 029418 174 HKGLQFGKVSGKPRKINSFW 193 (193)
Q Consensus 174 ~kGdvIleV~G~ArsLL~aE 193 (193)
++|++|++++|++++||++|
T Consensus 95 ~~G~~i~~~~G~a~~lL~~E 114 (294)
T PRK06978 95 TADSTVCELEGPARALLTAE 114 (294)
T ss_pred CCCCEEEEEEeCHHHHHHHH
Confidence 99999999999999999987
No 8
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=99.86 E-value=1.7e-21 Score=171.62 Aligned_cols=93 Identities=33% Similarity=0.431 Sum_probs=88.6
Q ss_pred hhHHHHHHHHHhhhcCCCCCccCccccCCCcEEEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeecCCEE
Q 029418 100 YDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQF 179 (193)
Q Consensus 100 ~~L~~~I~~aL~EDig~~GDlTT~ali~~d~~akA~IiAKEdGVlAGl~va~~IF~~ldp~leve~~v~DGd~V~kGdvI 179 (193)
..++++|++||+||+|+ ||+||.++++++..++++++|||+||+||+++++++|+++|++++++|+++||+.|++|++|
T Consensus 4 ~~~~~~i~~~l~ED~~~-~DlTt~~~i~~~~~~~~~~~ar~~gv~~G~~~a~~i~~~~~~~~~v~~~~~dG~~v~~g~~i 82 (277)
T PRK08072 4 LKLKQALNRFFLEDIGE-GDVTSQLIFPDNLLGEGVFLAKDTGVFAGRLVIEEGYKLLDERIEVELHKKDGDLVKKGEII 82 (277)
T ss_pred HHHHHHHHHHHhcCCCC-CCCCcccccCCCCeEEEEEEecCCEEEECHHHHHHHHHHcCCceEEEEEeCCCCEEcCCCEE
Confidence 35899999999999997 99999999877778999999999999999999999999999889999999999999999999
Q ss_pred EEEEeChhhhcccC
Q 029418 180 GKVSGKPRKINSFW 193 (193)
Q Consensus 180 leV~G~ArsLL~aE 193 (193)
++++|++++||++|
T Consensus 83 ~~~~G~~~~ll~~e 96 (277)
T PRK08072 83 ATVQGPVASLLTGE 96 (277)
T ss_pred EEEEECHHHHHHHH
Confidence 99999999999987
No 9
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=99.86 E-value=3.2e-21 Score=171.09 Aligned_cols=103 Identities=26% Similarity=0.387 Sum_probs=96.0
Q ss_pred CCcCCCCCChhhHHHHHHHHHhhhcCCCC-CccCccccCCCcEEEEEEEeeCCeEEEcHHHHHHHHH-HcCC-CcEEEEE
Q 029418 90 PAIKLPSHPTYDLKGVVKLALAEDAGDRG-DVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFH-EVDP-SLKVEWS 166 (193)
Q Consensus 90 ~~~~~p~~p~~~L~~~I~~aL~EDig~~G-DlTT~ali~~d~~akA~IiAKEdGVlAGl~va~~IF~-~ldp-~leve~~ 166 (193)
+-+.-..+....++++|++||+||+|+ | |+||+++++++..+++++++||+||+||+++++++|+ .+|+ +++++++
T Consensus 3 ~~~~~~~~~~~~~~~~i~~~l~ED~~~-~~DlTt~~l~~~~~~~~a~i~are~gilaG~~~a~~if~~~~~~~~~~v~~~ 81 (289)
T PRK07896 3 QLLALAGLELDEARAVIRRALDEDLRY-GPDVTTVATVPADAVATASVVSREAGVVAGLDVALLVLDEVLGTDGYEVLDR 81 (289)
T ss_pred ccccccCCCHHHHHHHHHHHHHHhCCC-CCCCCcCccCCCCCeEEEEEEecCCEEEECHHHHHHHHHHhcCCCceEEEEE
Confidence 345567889999999999999999997 7 9999999998999999999999999999999999995 6787 7899999
Q ss_pred cCCCCeeecCCEEEEEEeChhhhcccC
Q 029418 167 LKDGDHVHKGLQFGKVSGKPRKINSFW 193 (193)
Q Consensus 167 v~DGd~V~kGdvIleV~G~ArsLL~aE 193 (193)
++||+.|++|++|++++|++++||++|
T Consensus 82 ~~dG~~v~~g~~i~~i~G~a~~ll~~E 108 (289)
T PRK07896 82 VEDGARVPPGQALLTVTAPTRGLLTAE 108 (289)
T ss_pred cCCCCEecCCCEEEEEEECHHHHHHHH
Confidence 999999999999999999999999987
No 10
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=99.85 E-value=2e-21 Score=171.34 Aligned_cols=90 Identities=22% Similarity=0.422 Sum_probs=86.2
Q ss_pred hHHHHHHHHHhhhcCCCCCccCccccCCCcEEEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeecCCEEE
Q 029418 101 DLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFG 180 (193)
Q Consensus 101 ~L~~~I~~aL~EDig~~GDlTT~ali~~d~~akA~IiAKEdGVlAGl~va~~IF~~ldp~leve~~v~DGd~V~kGdvIl 180 (193)
..++.|++||+||+|+ ||+||.++++++.++++++++||+||+||+++++++|+.+| ++++++++||++|++|++|+
T Consensus 3 ~~~~~i~~~l~ED~~~-gDlTt~~l~~~~~~~~~~~~are~gv~~G~~~~~~i~~~l~--~~~~~~~~dG~~v~~g~~i~ 79 (277)
T TIGR01334 3 ISTGLIDNLLLEDIGY-GDLTTRALGIQDHPAHITFTARDEGIVSGVSEAAKLLKQLG--ASIDYAVPSGSRALAGTLLL 79 (277)
T ss_pred CCHHHHHHHHHhcCCC-CCCCCccccCCCceEEEEEEEcCCEEEECHHHHHHHHHHcC--CEEEEEeCCCCEeCCCCEEE
Confidence 3467799999999997 99999999999999999999999999999999999999998 99999999999999999999
Q ss_pred EEEeChhhhcccC
Q 029418 181 KVSGKPRKINSFW 193 (193)
Q Consensus 181 eV~G~ArsLL~aE 193 (193)
+++|++++||++|
T Consensus 80 ~~~G~a~~ll~~e 92 (277)
T TIGR01334 80 EAKGSAGQLHQGW 92 (277)
T ss_pred EEEecHHHHHHHH
Confidence 9999999999987
No 11
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=99.85 E-value=2.9e-21 Score=170.94 Aligned_cols=89 Identities=20% Similarity=0.331 Sum_probs=85.6
Q ss_pred HHHHHHHHHhhhcCCCCCccCccccCCCcEEEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeecCCEEEE
Q 029418 102 LKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGK 181 (193)
Q Consensus 102 L~~~I~~aL~EDig~~GDlTT~ali~~d~~akA~IiAKEdGVlAGl~va~~IF~~ldp~leve~~v~DGd~V~kGdvIle 181 (193)
-++.|++||+||+|+ ||+||.++++++..+++.+++||+||+||+++++++|+.+| ++++|+++||+.|++|++|++
T Consensus 5 ~~~~i~~~l~ED~~~-gDlTt~~l~~~~~~~~~~~~ake~gv~aG~~~a~~if~~l~--~~v~~~~~dG~~v~~G~~i~~ 81 (284)
T PRK06096 5 SDAQLDALLLEDIQG-GDLTTRALGIGHQPGYIEFFHRQGGCVSGISVACKMLTTLG--LTIDDAVSDGSQANAGQRLIS 81 (284)
T ss_pred cHHHHHHHHHhcCCC-CCCCCccccCCCceEEEEEEEcCCEEEECHHHHHHHHHHcC--CEEEEEeCCCCEeCCCCEEEE
Confidence 457799999999997 99999999999999999999999999999999999999997 999999999999999999999
Q ss_pred EEeChhhhcccC
Q 029418 182 VSGKPRKINSFW 193 (193)
Q Consensus 182 V~G~ArsLL~aE 193 (193)
++|++++||++|
T Consensus 82 ~~G~a~~ll~~e 93 (284)
T PRK06096 82 AQGNAAALHQGW 93 (284)
T ss_pred EEeCHHHHHHHH
Confidence 999999999987
No 12
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=99.85 E-value=4.7e-21 Score=168.84 Aligned_cols=92 Identities=30% Similarity=0.550 Sum_probs=86.9
Q ss_pred hhHHHHHHHHHhhhcCCCCCccCccccCCCcEEEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeecCCEE
Q 029418 100 YDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQF 179 (193)
Q Consensus 100 ~~L~~~I~~aL~EDig~~GDlTT~ali~~d~~akA~IiAKEdGVlAGl~va~~IF~~ldp~leve~~v~DGd~V~kGdvI 179 (193)
..+++.|++||+||+|+ ||+|| .+++++.+++++++|||+||+||++++.++|+.+|++++++++++||+.|++|++|
T Consensus 7 ~~~~~~i~~~l~ED~~~-gDlTt-~~~~~~~~~~~~i~ar~~gi~~G~~~~~~i~~~~~~~~~~~~~~~dG~~v~~g~~i 84 (277)
T PRK05742 7 AEIEANVRRALAEDIGS-GDITA-QLIPAERLAKATVITREAAVIAGTAWVDAVFRQLDPRVAVHWQVADGERVSANQVL 84 (277)
T ss_pred HHHHHHHHHHHHhcCCC-CCCCc-cccCCCcEEEEEEEECCCEEEECHHHHHHHHHHcCCceEEEEEeCCCCEEcCCCEE
Confidence 45789999999999997 99999 46677888999999999999999999999999999889999999999999999999
Q ss_pred EEEEeChhhhcccC
Q 029418 180 GKVSGKPRKINSFW 193 (193)
Q Consensus 180 leV~G~ArsLL~aE 193 (193)
++++|++++||++|
T Consensus 85 ~~i~G~~~~ll~~E 98 (277)
T PRK05742 85 FHLEGPARSLLTGE 98 (277)
T ss_pred EEEEEcHHHHHHHH
Confidence 99999999999987
No 13
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=99.85 E-value=4.8e-21 Score=167.37 Aligned_cols=89 Identities=45% Similarity=0.771 Sum_probs=85.9
Q ss_pred HHHHHHHhhhcCCCCCccCccccCCCcEEEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeecCCEEEEEE
Q 029418 104 GVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVS 183 (193)
Q Consensus 104 ~~I~~aL~EDig~~GDlTT~ali~~d~~akA~IiAKEdGVlAGl~va~~IF~~ldp~leve~~v~DGd~V~kGdvIleV~ 183 (193)
+.|++||+||+|+ ||+||.++++++..+++++++|++||+||++++.++|+.+|++++++|+++||+.|++|++|++++
T Consensus 2 ~~i~~~l~ED~~~-~D~tt~~~~~~~~~~~~~~~ar~~~v~~G~~~~~~i~~~~~~~l~v~~~~~dG~~v~~g~~i~~i~ 80 (268)
T cd01572 2 AIVRLALAEDLGR-GDITSEAIIPPDARAEARLIAKEEGVLAGLPVAEEVFELLDPGIEVEWLVKDGDRVEPGQVLATVE 80 (268)
T ss_pred HHHHHHHHhcCCC-CCCCcccccCCCCeEEEEEEEcCCEEEECHHHHHHHHHHcCCCeEEEEEeCCCCEecCCCEEEEEE
Confidence 5789999999997 999999999889999999999999999999999999999988899999999999999999999999
Q ss_pred eChhhhcccC
Q 029418 184 GKPRKINSFW 193 (193)
Q Consensus 184 G~ArsLL~aE 193 (193)
|++++||++|
T Consensus 81 G~~~~ll~~E 90 (268)
T cd01572 81 GPARSLLTAE 90 (268)
T ss_pred ECHHHHHHHH
Confidence 9999999987
No 14
>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....
Probab=99.85 E-value=1.2e-21 Score=145.00 Aligned_cols=77 Identities=40% Similarity=0.627 Sum_probs=69.9
Q ss_pred cCCCCCccCccccCCCcEEEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeecCCEEEEEEeChhhhcccC
Q 029418 114 AGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGKPRKINSFW 193 (193)
Q Consensus 114 ig~~GDlTT~ali~~d~~akA~IiAKEdGVlAGl~va~~IF~~ldp~leve~~v~DGd~V~kGdvIleV~G~ArsLL~aE 193 (193)
+|+ ||+||+++++++.++++.++|||+||+||+++++++|++++ ++++|+++||++|++|++|++++|++++||++|
T Consensus 1 i~~-gDlTt~~~~~~~~~~~a~i~are~gV~aG~~~~~~i~~~l~--~~v~~~~~dG~~v~~g~~i~~i~G~a~~ll~~E 77 (88)
T PF02749_consen 1 IGR-GDLTTEALIPPDKTGTATIIAREDGVLAGLEEAEEIFEKLG--LEVEWLVKDGDRVEPGDVILEIEGPARALLTAE 77 (88)
T ss_dssp HTT-G-HHHHHHSCTTSEEEEEEEESSSEEE-SHHHHHHHHHHCT--EEEEESS-TT-EEETTCEEEEEEEEHHHHHHHH
T ss_pred CcC-CccCcccccCCCCEEEEEEEeCCCEEEECHHHHHHHHhhcc--EEEEEEeCCCCCccCCcEEEEEEeCHHHHHHHH
Confidence 475 99999889999999999999999999999999999999996 999999999999999999999999999999987
No 15
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=99.84 E-value=1.6e-20 Score=167.30 Aligned_cols=92 Identities=27% Similarity=0.508 Sum_probs=87.1
Q ss_pred hhHHHHHHHHHhhhcC-----CCCCccCccccCCCcEEEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeee
Q 029418 100 YDLKGVVKLALAEDAG-----DRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVH 174 (193)
Q Consensus 100 ~~L~~~I~~aL~EDig-----~~GDlTT~ali~~d~~akA~IiAKEdGVlAGl~va~~IF~~ldp~leve~~v~DGd~V~ 174 (193)
.+++++|++||+||+| + ||+|| .+++++..++++|+|||+||+||+++++++|+++|++++++++++||+.|+
T Consensus 21 ~~~~~~i~~~l~ED~~~~~~~~-gDlTt-~~l~~~~~~~~~i~ake~gi~aG~~~a~~vf~~l~~~~~v~~~~~dG~~v~ 98 (296)
T PRK09016 21 LDIPAAVAQALREDLGGTVDAN-NDITA-QLLPADSRSHATIITREDGVFCGKRWVEEVFIQLGDDVTIEWHVDDGDVIT 98 (296)
T ss_pred HHHHHHHHHHHHHhCCCCCCCC-CCcCC-cccCCCCEEEEEEEEcCCEEEECHHHHHHHHHHcCCCeEEEEEcCCCCEec
Confidence 4689999999999999 5 99999 566778889999999999999999999999999998899999999999999
Q ss_pred cCCEEEEEEeChhhhcccC
Q 029418 175 KGLQFGKVSGKPRKINSFW 193 (193)
Q Consensus 175 kGdvIleV~G~ArsLL~aE 193 (193)
+|++|++++|++++||++|
T Consensus 99 ~G~~i~~i~G~a~~ll~~E 117 (296)
T PRK09016 99 ANQTLFELTGPARVLLTGE 117 (296)
T ss_pred CCCEEEEEEECHHHHHHHH
Confidence 9999999999999999987
No 16
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=99.84 E-value=1.1e-20 Score=165.44 Aligned_cols=87 Identities=24% Similarity=0.316 Sum_probs=84.0
Q ss_pred HHHHHHHhhhcCCCCCccCccccCCCcEEEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeecCCEEEEEE
Q 029418 104 GVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVS 183 (193)
Q Consensus 104 ~~I~~aL~EDig~~GDlTT~ali~~d~~akA~IiAKEdGVlAGl~va~~IF~~ldp~leve~~v~DGd~V~kGdvIleV~ 183 (193)
..|++||+||+|+ ||+||.++++++..+++.+++||+||+||++++.++|+.+| ++++++++||+.|++|++|++++
T Consensus 2 ~~i~~~l~ED~~~-~D~tt~~~~~~~~~~~~~~~ak~~gv~aG~~~~~~~~~~~~--~~v~~~~~dG~~v~~g~~i~~i~ 78 (272)
T cd01573 2 AELERLLLEDAPY-GDLTTEALGIGEQPGKITFRARDPGVLCGTEEAARILELLG--LEVDLAAASGSRVAAGAVLLEAE 78 (272)
T ss_pred HHHHHHHHhcCCC-CCCCccccCCCCCeEEEEEEECCCEEEECHHHHHHHHHHcC--cEEEEEcCCCCEecCCCEEEEEE
Confidence 5689999999997 99999999998999999999999999999999999999997 99999999999999999999999
Q ss_pred eChhhhcccC
Q 029418 184 GKPRKINSFW 193 (193)
Q Consensus 184 G~ArsLL~aE 193 (193)
|++++||++|
T Consensus 79 G~~~~ll~~E 88 (272)
T cd01573 79 GPAAALHLGW 88 (272)
T ss_pred EcHHHHHHHH
Confidence 9999999987
No 17
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=99.83 E-value=1.5e-20 Score=163.84 Aligned_cols=88 Identities=41% Similarity=0.646 Sum_probs=84.5
Q ss_pred HHHHHHHhhhcCCCCCccCccccCCCcEEEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeecCCEEEEEE
Q 029418 104 GVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVS 183 (193)
Q Consensus 104 ~~I~~aL~EDig~~GDlTT~ali~~d~~akA~IiAKEdGVlAGl~va~~IF~~ldp~leve~~v~DGd~V~kGdvIleV~ 183 (193)
++|++||+||+|+ ||+||.++++++..++++|++|++||+||++++.++|+.+| +++++++++||+.|++|++|++++
T Consensus 2 ~~i~~~l~ED~~~-gD~tt~~~~~~~~~~~~~i~~r~~~v~~G~~~~~~i~~~~~-~~~v~~~~~dG~~v~~g~~i~~i~ 79 (269)
T cd01568 2 ALLDRALAEDLGY-GDLTTEALIPGDAPATATLIAKEEGVLAGLEVAEEVFELLD-GIEVEWLVKDGDRVEAGQVLLEVE 79 (269)
T ss_pred HHHHHHHHhcCCC-CCCCcccccCCCceEEEEEEecCCEEEECHHHHHHHHHHhC-CeEEEEEeCCCCEecCCCEEEEEE
Confidence 5789999999997 99999999988999999999999999999999999999996 699999999999999999999999
Q ss_pred eChhhhcccC
Q 029418 184 GKPRKINSFW 193 (193)
Q Consensus 184 G~ArsLL~aE 193 (193)
|++++||++|
T Consensus 80 G~~~~l~~~E 89 (269)
T cd01568 80 GPARSLLTAE 89 (269)
T ss_pred EcHHHHHHHH
Confidence 9999999987
No 18
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=99.83 E-value=2.5e-20 Score=164.47 Aligned_cols=87 Identities=36% Similarity=0.470 Sum_probs=83.4
Q ss_pred HHHHHHHhhhcCCCCCccCccccCCCcEEEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeecCCEEEEEE
Q 029418 104 GVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVS 183 (193)
Q Consensus 104 ~~I~~aL~EDig~~GDlTT~ali~~d~~akA~IiAKEdGVlAGl~va~~IF~~ldp~leve~~v~DGd~V~kGdvIleV~ 183 (193)
..|++||+||+|+ ||+||+++++++..+++++++|++||+||++++.++|+.++ ++++++++||+.|++|++|++++
T Consensus 4 ~~l~~~l~ED~~~-gDlTt~~li~~~~~~~~~~~ar~~gi~aG~~~a~~i~~~l~--~~v~~~~~dG~~v~~g~~i~~i~ 80 (278)
T PRK08385 4 EYLLRFVEEDAPF-GDVTSEAVIPPDVTARAVIIAKQDGVIAGLEEAKALFEHFG--VKVEVRKRDGEEVKAGEVILELK 80 (278)
T ss_pred HHHHHHHHhcCCC-CCCCcccccCCCCeEEEEEEecCCeEEeCHHHHHHHHHHcC--CEEEEEcCCCCEecCCCEEEEEE
Confidence 5689999999997 99999998887889999999999999999999999999997 99999999999999999999999
Q ss_pred eChhhhcccC
Q 029418 184 GKPRKINSFW 193 (193)
Q Consensus 184 G~ArsLL~aE 193 (193)
|++++||++|
T Consensus 81 G~~~~ll~~E 90 (278)
T PRK08385 81 GNARAILLVE 90 (278)
T ss_pred ECHHHHHHHH
Confidence 9999999987
No 19
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=99.82 E-value=2.9e-20 Score=162.35 Aligned_cols=86 Identities=36% Similarity=0.621 Sum_probs=82.8
Q ss_pred HHHHHHhhhcCCCCCccCccccCCCcEEEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeecCCEEEEEEe
Q 029418 105 VVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSG 184 (193)
Q Consensus 105 ~I~~aL~EDig~~GDlTT~ali~~d~~akA~IiAKEdGVlAGl~va~~IF~~ldp~leve~~v~DGd~V~kGdvIleV~G 184 (193)
+|++||+||+|+ ||+||+++++++.+++++|++||+||+||++++.++|+.++ ++++++++||+.+++|++|++++|
T Consensus 1 ~i~~~l~ED~~~-gDlTt~~~~~~~~~~~~~~~ar~~~v~~G~~~~~~i~~~~~--~~v~~~~~dG~~v~~g~~i~~i~G 77 (265)
T TIGR00078 1 LLDRWLREDLGS-GDITTEALVPGSTRATASLVAKEDGVLAGLPVARRVFEQLG--VQVEWLVKDGDRVEPGEVVAEVEG 77 (265)
T ss_pred ChHHHHhhCCCC-CCCCcccccCCCceEEEEEEecCCEEEECHHHHHHHHHHcC--eEEEEEeCCCCEecCCCEEEEEEE
Confidence 378999999996 99999999999999999999999999999999999999998 999999999999999999999999
Q ss_pred ChhhhcccC
Q 029418 185 KPRKINSFW 193 (193)
Q Consensus 185 ~ArsLL~aE 193 (193)
++++||++|
T Consensus 78 ~~~~il~~E 86 (265)
T TIGR00078 78 PARSLLTAE 86 (265)
T ss_pred cHHHHHHHH
Confidence 999999987
No 20
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=99.82 E-value=5e-20 Score=162.06 Aligned_cols=89 Identities=24% Similarity=0.406 Sum_probs=84.5
Q ss_pred hHHHHHHHHHhhhcCCCCCccCccccCCCcEEEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeecCCEEE
Q 029418 101 DLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFG 180 (193)
Q Consensus 101 ~L~~~I~~aL~EDig~~GDlTT~ali~~d~~akA~IiAKEdGVlAGl~va~~IF~~ldp~leve~~v~DGd~V~kGdvIl 180 (193)
.++++|++||+||+|+ ||+|| .+++.+..+++.+++|++||+||++++.++|+.+| ++++++++||+.+++|++|+
T Consensus 2 ~~~~~i~~~l~ED~~~-~DlTt-~~~~~~~~~~a~i~ar~~~v~~G~~~a~~i~~~l~--~~~~~~~~dG~~v~~g~~i~ 77 (273)
T PRK05848 2 EIKDFLEAALKEDLGR-GDLFE-RLLEKDFKATAKIIAKSEGVFSGEKYALELLEMTG--IECVFTIKDGERFKKGDILM 77 (273)
T ss_pred cHHHHHHHHHHhcCCC-CCccc-cccCCCCeEEEEEEEcCCEEEECHHHHHHHHHHcC--CEEEEEcCCCCEecCCCEEE
Confidence 4789999999999997 99999 56777888999999999999999999999999998 99999999999999999999
Q ss_pred EEEeChhhhcccC
Q 029418 181 KVSGKPRKINSFW 193 (193)
Q Consensus 181 eV~G~ArsLL~aE 193 (193)
+++|++++||++|
T Consensus 78 ~i~G~a~~ll~~E 90 (273)
T PRK05848 78 EIEGDFSMLLKVE 90 (273)
T ss_pred EEEECHHHHHHHH
Confidence 9999999999987
No 21
>KOG3008 consensus Quinolinate phosphoribosyl transferase [Nucleotide transport and metabolism]
Probab=99.65 E-value=9.4e-17 Score=140.47 Aligned_cols=100 Identities=27% Similarity=0.318 Sum_probs=90.5
Q ss_pred CCCCCcCCCCCChhhHHHHHHHHHhhhcCCCCCccCccccCCCcEEEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEE
Q 029418 87 FESPAIKLPSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWS 166 (193)
Q Consensus 87 ~~~~~~~~p~~p~~~L~~~I~~aL~EDig~~GDlTT~ali~~d~~akA~IiAKEdGVlAGl~va~~IF~~ldp~leve~~ 166 (193)
..++-++||.|+.++++..+.+.+.||-+.+||+++.+.+ .+|.+.|||||++||++++.+||++++ +++||+
T Consensus 4 eV~~~llPpv~~a~~~d~viwL~ed~p~~~~G~~v~ga~~-----~EA~l~aK~DG~laGVpfAd~iF~q~~--LqVEW~ 76 (300)
T KOG3008|consen 4 EVLALLLPPVTLAALVDSVIWLREDCPGLNYGALVSGAGP-----SEAALWAKSDGVLAGVPFADAIFTQLN--LQVEWF 76 (300)
T ss_pred chhcccCCCCchHHHHHHHHHHHhcCCCCcccceEecCCh-----HHHHhhccCCCeeecchhHHHHHhhhc--eeEEEE
Confidence 4567899999999999998877777777767888887543 689999999999999999999999998 999999
Q ss_pred cCCCCeeecCCEEEEEEeChhhhcccC
Q 029418 167 LKDGDHVHKGLQFGKVSGKPRKINSFW 193 (193)
Q Consensus 167 v~DGd~V~kGdvIleV~G~ArsLL~aE 193 (193)
.+||+++.|+-.++.|+||++.||.+|
T Consensus 77 ~KeGs~l~p~~~vaKv~GpAh~IllAE 103 (300)
T KOG3008|consen 77 LKEGSKLVPVARVAKVRGPAHCILLAE 103 (300)
T ss_pred ecCCCeecccceeEeecCcceeeeehH
Confidence 999999999999999999999999876
No 22
>PRK08662 nicotinate phosphoribosyltransferase; Reviewed
Probab=99.45 E-value=9.8e-14 Score=125.51 Aligned_cols=85 Identities=16% Similarity=0.143 Sum_probs=78.5
Q ss_pred HHHHHHHHhhhcCCCCCccCccc---cCCCcEEEEEEEee-----CCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeee
Q 029418 103 KGVVKLALAEDAGDRGDVTCMAT---IPLDMEVEAHFLAK-----EDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVH 174 (193)
Q Consensus 103 ~~~I~~aL~EDig~~GDlTT~al---i~~d~~akA~IiAK-----EdGVlAGl~va~~IF~~ldp~leve~~v~DGd~V~ 174 (193)
++.|+.+|.||+ | +|.|++.+ .. +..+++.+++| ++||+||++++.++|+.++ +++ +.++||+.|.
T Consensus 9 ~~~~~~~l~~D~-Y-~~~t~~~l~~~g~-~~~~~~~i~~R~~p~~~~~i~aG~~~a~~~~~~~~--~~v-~~~~dG~~v~ 82 (343)
T PRK08662 9 EEEIKSGKTTDI-Y-FERTVEILEHAGK-NPKVVAEVTASSLPKGEWGVFAGLEEVLELLEGKP--VDV-YALPEGTLFD 82 (343)
T ss_pred HHHHHhhhHHHH-H-HHHHHHHHHHcCC-CCeEEEEEEEecCCCCCCEEEccHHHHHHHHhhCC--cEE-EEeCCCCEec
Confidence 456889999999 7 99999987 44 78899999999 9999999999999999986 888 8999999999
Q ss_pred cCCEEEEEEeChhhhcccC
Q 029418 175 KGLQFGKVSGKPRKINSFW 193 (193)
Q Consensus 175 kGdvIleV~G~ArsLL~aE 193 (193)
+|+++++++|+++++|.+|
T Consensus 83 ~g~~il~i~G~~~~ll~~E 101 (343)
T PRK08662 83 PKEPVMRIEGPYLEFGIYE 101 (343)
T ss_pred CCceEEEEEEcHHHHHHHH
Confidence 9999999999999999887
No 23
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=99.11 E-value=1.9e-10 Score=99.21 Aligned_cols=75 Identities=27% Similarity=0.410 Sum_probs=69.2
Q ss_pred CccCcccc----CCCcEEEEEEEeeCC--eEEEcHHHHHHHHHHcC-CCcEEEEEcCCCCeeecCCEEEEEEeChhhhcc
Q 029418 119 DVTCMATI----PLDMEVEAHFLAKED--GIIAGIALAEMIFHEVD-PSLKVEWSLKDGDHVHKGLQFGKVSGKPRKINS 191 (193)
Q Consensus 119 DlTT~ali----~~d~~akA~IiAKEd--GVlAGl~va~~IF~~ld-p~leve~~v~DGd~V~kGdvIleV~G~ArsLL~ 191 (193)
|+|+..+. .++..+++.+++|++ ||+||++++.++|+.++ +.+...+.++||+.+++|+.+++++|++++++.
T Consensus 1 D~y~~~~~~~~~~~~~~~~~~~~~R~~~~~v~~Gl~~~~~~l~~l~~~~~~~~~~~~eG~~v~~g~~vl~i~G~~~~~~~ 80 (281)
T cd00516 1 DLYKLTMIQAYPPPDTRATAEFTAREDPYGVLAGLEEALELLELLRFPGPLVILAVPEGTVVEPGEPLLTIEGPARELLL 80 (281)
T ss_pred ChhHHHHHhhhCCCCCEEEEEEEEecCCCEEEcCHHHHHHHHHhcCCCCceEEEECCCCCEecCCCEEEEEEEcHHHHHH
Confidence 77777776 678899999999999 99999999999999995 568999999999999999999999999999998
Q ss_pred cC
Q 029418 192 FW 193 (193)
Q Consensus 192 aE 193 (193)
+|
T Consensus 81 ~E 82 (281)
T cd00516 81 LE 82 (281)
T ss_pred HH
Confidence 76
No 24
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=99.03 E-value=1.2e-10 Score=103.59 Aligned_cols=73 Identities=12% Similarity=0.100 Sum_probs=65.3
Q ss_pred CCccCcccc--CCCcEEEEEEEeeCC--eEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeecCCEEEEEEeChhhhcccC
Q 029418 118 GDVTCMATI--PLDMEVEAHFLAKED--GIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGKPRKINSFW 193 (193)
Q Consensus 118 GDlTT~ali--~~d~~akA~IiAKEd--GVlAGl~va~~IF~~ldp~leve~~v~DGd~V~kGdvIleV~G~ArsLL~aE 193 (193)
.|.|++.+. .++..+++++++|++ ||+||++++.++|+.++ +++. .++||+.|.+|++|++++|+++.+|.+|
T Consensus 8 f~~t~~~~~~~~~~~~~~~~i~~r~~~~~v~aG~~~~~~~~~~~~--~~i~-~~~dG~~v~~g~~i~~i~G~~~~ll~~E 84 (302)
T cd01571 8 FLRTRKILEKKGPNPTVTMEFTQRSLPWAVLCGLEEVLALLEGLP--VKVY-ALPEGTIFNPKEPVLRIEGPYQDFGELE 84 (302)
T ss_pred HHHHHHHHHHhCCCCeEEEEEEEEcCchHHHhhHHHHHHHHhCCC--eEEE-EeCCCCEECCCCcEEEEEeCHHHHHHHH
Confidence 688887543 467789999999999 99999999999999885 8885 5999999999999999999999999887
No 25
>PRK07188 nicotinate phosphoribosyltransferase; Provisional
Probab=98.83 E-value=1.1e-08 Score=93.47 Aligned_cols=66 Identities=15% Similarity=0.178 Sum_probs=58.9
Q ss_pred CCcEEEEEEEee-CCeEEEcHHHHHHHHHHcCCCcE--EEEEcCCCCeeecCCEEEEEEeChhhhcccC
Q 029418 128 LDMEVEAHFLAK-EDGIIAGIALAEMIFHEVDPSLK--VEWSLKDGDHVHKGLQFGKVSGKPRKINSFW 193 (193)
Q Consensus 128 ~d~~akA~IiAK-EdGVlAGl~va~~IF~~ldp~le--ve~~v~DGd~V~kGdvIleV~G~ArsLL~aE 193 (193)
++..+++++++| ++||+||++++.++|+.++.+-+ ..+.++||+.|.+|++|++++|++..++.+|
T Consensus 35 ~~~~~~~~~~~R~~~~VlaGleea~~ll~~l~~~~~~~~i~a~~eG~~v~~gepvl~i~G~~~~l~~~E 103 (352)
T PRK07188 35 PNNIVTMQFFQRRENAVLCGTDEVIALLKTFAKDPSKLKIRYLKDGDIINPFETVLEIEGPYENFGFLE 103 (352)
T ss_pred CCCeEEEEEEEeCCCeEEecHHHHHHHHHHcCCCccceEEEEcCCCCEecCCCEEEEEEEcHHHHHHHH
Confidence 356899999999 99999999999999999863322 5679999999999999999999999999877
No 26
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=93.99 E-value=0.054 Score=36.21 Aligned_cols=24 Identities=21% Similarity=0.221 Sum_probs=20.8
Q ss_pred EEEEcCCCCeeecCCEEEEEEeCh
Q 029418 163 VEWSLKDGDHVHKGLQFGKVSGKP 186 (193)
Q Consensus 163 ve~~v~DGd~V~kGdvIleV~G~A 186 (193)
.++++++|+.|++||+++++.-+.
T Consensus 14 ~~v~V~~G~~VkkGd~L~~ld~~~ 37 (50)
T PF13533_consen 14 ESVYVKEGQQVKKGDVLLVLDSPD 37 (50)
T ss_pred EEEEecCCCEEcCCCEEEEECcHH
Confidence 467999999999999999997643
No 27
>cd01570 NAPRTase_A Nicotinate phosphoribosyltransferase (NAPRTase), subgroup A. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products. This subgroup is present in bacteria and eukaryota (except funghi).
Probab=92.69 E-value=0.21 Score=45.30 Aligned_cols=64 Identities=9% Similarity=0.120 Sum_probs=46.8
Q ss_pred CcEEEEEEEeeC------CeEEEcHHHHHHHHHHc---------------------------CCCcEEEEEcCCCCeeec
Q 029418 129 DMEVEAHFLAKE------DGIIAGIALAEMIFHEV---------------------------DPSLKVEWSLKDGDHVHK 175 (193)
Q Consensus 129 d~~akA~IiAKE------dGVlAGl~va~~IF~~l---------------------------dp~leve~~v~DGd~V~k 175 (193)
+.+++..++.|. -+|++|++.+-+.++.+ .-++++ +.++||+.+.+
T Consensus 22 ~~~~~~~~~~R~~p~~~~~~v~~gl~~~l~~L~~l~~t~~ei~~l~~~~~~~~~~~~~L~~~~~~v~i-~a~~EG~~v~~ 100 (327)
T cd01570 22 NKPAVFELFFRKLPFGGGYAVFAGLEELLEYLENFRFTEEDIDYLRSLGIFDEEFLDYLRGFRFTGTI-YAIPEGEVVFP 100 (327)
T ss_pred CCeEEEEEEECCCCCCCcccHHHHHHHHHHHHhcCCCCHHHHHHHHhCCCCCHHHHHHHHhCCCCceE-EEecCCceecC
Confidence 445777777776 25689998887766654 012454 34799999999
Q ss_pred CCEEEEEEeChhhhcccC
Q 029418 176 GLQFGKVSGKPRKINSFW 193 (193)
Q Consensus 176 GdvIleV~G~ArsLL~aE 193 (193)
|+.+++|+|+....+..|
T Consensus 101 ~~pvl~IeGp~~~~~l~E 118 (327)
T cd01570 101 NEPLLTVEGPLIEAQLLE 118 (327)
T ss_pred CcEEEEEEEcHHHHHHHH
Confidence 999999999988765443
No 28
>PRK09243 nicotinate phosphoribosyltransferase; Validated
Probab=91.07 E-value=0.33 Score=46.21 Aligned_cols=66 Identities=11% Similarity=0.101 Sum_probs=48.4
Q ss_pred CCCcEEEEEEEeeC------CeEEEcHHHHHHHHHHcC---------------------------CCcEEEEEcCCCCee
Q 029418 127 PLDMEVEAHFLAKE------DGIIAGIALAEMIFHEVD---------------------------PSLKVEWSLKDGDHV 173 (193)
Q Consensus 127 ~~d~~akA~IiAKE------dGVlAGl~va~~IF~~ld---------------------------p~leve~~v~DGd~V 173 (193)
+.+.++...++.|. .+|+||++.+...++.+. -..++ +.++||+.+
T Consensus 29 ~~~~~~~f~~~~R~~p~~~~~~v~aGl~~~l~~L~~~~ft~~ei~~l~~~~~f~~~f~~~L~~~~f~~~I-~a~pEG~~v 107 (464)
T PRK09243 29 IHNRRAVFELFFRKLPFGRGYAVFAGLERLLEYLENLRFTEEDIEYLRSLGIFDEDFLDYLRNFRFTGDV-RAVPEGELV 107 (464)
T ss_pred CCCcEEEEEEEEcCCCCCcchHHHHHHHHHHHHHHhCCCCHHHHHHHHhcCCCCHHHHHHHHhCCCCCeE-EEEeCCccc
Confidence 34555677777766 368999999988877650 01344 556899999
Q ss_pred ecCCEEEEEEeChhhhcccC
Q 029418 174 HKGLQFGKVSGKPRKINSFW 193 (193)
Q Consensus 174 ~kGdvIleV~G~ArsLL~aE 193 (193)
.+|+.+++|+|+....+..|
T Consensus 108 ~~~epvl~IeGp~~~~~l~E 127 (464)
T PRK09243 108 FPNEPLLRVEGPLAEAQLLE 127 (464)
T ss_pred cCCcEEEEEEecHHHHHHHH
Confidence 99999999999988765443
No 29
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=90.69 E-value=0.24 Score=35.18 Aligned_cols=23 Identities=26% Similarity=0.653 Sum_probs=20.6
Q ss_pred EEEEcCCCCeeecCCEEEEEEeC
Q 029418 163 VEWSLKDGDHVHKGLQFGKVSGK 185 (193)
Q Consensus 163 ve~~v~DGd~V~kGdvIleV~G~ 185 (193)
.+|++++|+.|++||.+++++-.
T Consensus 18 ~~~~v~~G~~V~~G~~l~~iet~ 40 (74)
T PF00364_consen 18 TKWLVEEGDKVKKGDPLAEIETM 40 (74)
T ss_dssp EEESSSTTEEESTTSEEEEEESS
T ss_pred eEEEECCCCEEEcCceEEEEEcC
Confidence 56999999999999999999753
No 30
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=90.24 E-value=0.39 Score=33.75 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=21.1
Q ss_pred EEEEEcCCCCeeecCCEEEEEEeC
Q 029418 162 KVEWSLKDGDHVHKGLQFGKVSGK 185 (193)
Q Consensus 162 eve~~v~DGd~V~kGdvIleV~G~ 185 (193)
=.+|++++||.|++||.+++++-.
T Consensus 13 i~~~~v~~Gd~V~~g~~l~~ve~~ 36 (71)
T PRK05889 13 VLEVVVNEGDQIGKGDTLVLLESM 36 (71)
T ss_pred EEEEEeCCCCEECCCCEEEEEEec
Confidence 468999999999999999988754
No 31
>PRK06748 hypothetical protein; Validated
Probab=90.18 E-value=0.37 Score=36.15 Aligned_cols=23 Identities=4% Similarity=-0.002 Sum_probs=21.2
Q ss_pred EEEEEcCCCCeeecCCEEEEEEe
Q 029418 162 KVEWSLKDGDHVHKGLQFGKVSG 184 (193)
Q Consensus 162 eve~~v~DGd~V~kGdvIleV~G 184 (193)
=.+|++++||.|++||.|++++-
T Consensus 15 I~~w~vk~GD~V~~gd~l~~IET 37 (83)
T PRK06748 15 VEKLFVRESSYVYEWEKLALIET 37 (83)
T ss_pred EEEEEeCCCCEECCCCEEEEEEc
Confidence 46899999999999999999987
No 32
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=88.63 E-value=0.72 Score=33.63 Aligned_cols=32 Identities=28% Similarity=0.489 Sum_probs=25.4
Q ss_pred cCCCcEEEEEcCCCCeeecCCEEEEEEeChhh
Q 029418 157 VDPSLKVEWSLKDGDHVHKGLQFGKVSGKPRK 188 (193)
Q Consensus 157 ldp~leve~~v~DGd~V~kGdvIleV~G~Ars 188 (193)
.|+..=+.++++=||+|++||++++|+.+-..
T Consensus 28 ID~~vGi~l~~k~Gd~V~~Gd~l~~i~~~~~~ 59 (75)
T PF07831_consen 28 IDPAVGIELHKKVGDRVEKGDPLATIYANDEA 59 (75)
T ss_dssp --TT-EEEESS-TTSEEBTTSEEEEEEESSSS
T ss_pred cCcCcCeEecCcCcCEECCCCeEEEEEcCChH
Confidence 45667889999999999999999999998665
No 33
>cd01567 NAPRTase_PncB Nicotinate phosphoribosyltransferase (NAPRTase) family. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=87.83 E-value=1.2 Score=40.15 Aligned_cols=63 Identities=16% Similarity=0.202 Sum_probs=47.2
Q ss_pred CcEEEEEEEeeCC------eEEEcHHHHHHHHHHcC-------------------------CCcEEEE-EcCCCCeeecC
Q 029418 129 DMEVEAHFLAKED------GIIAGIALAEMIFHEVD-------------------------PSLKVEW-SLKDGDHVHKG 176 (193)
Q Consensus 129 d~~akA~IiAKEd------GVlAGl~va~~IF~~ld-------------------------p~leve~-~v~DGd~V~kG 176 (193)
+..+...+..|.. ++++|++.+.+.+..+- ....+++ .++||+.+.++
T Consensus 21 ~~~v~~~~~~R~~~~~~~~~v~~gl~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~a~~eG~~~~~~ 100 (343)
T cd01567 21 NTRVVFEFTFRSNPFGGDYIVFAGLEEVLKLLENLRFTEEEIEYLKKLLIFGEFFLYLLFLGKLPLEIYALPEGTVVFPK 100 (343)
T ss_pred CeEEEEEEEEcCCCCCCCeeHHHHHHHHHHHHHhCCCCHHHHHHHHhcCCCcHHHHHHhhcCCCceEEEEeCCcccccCC
Confidence 4567778888874 78899998887766431 1234444 57899999999
Q ss_pred CEEEEEEeChhhhcc
Q 029418 177 LQFGKVSGKPRKINS 191 (193)
Q Consensus 177 dvIleV~G~ArsLL~ 191 (193)
+.+++|+|+......
T Consensus 101 ~~~i~IeG~~~~~~~ 115 (343)
T cd01567 101 EPLLTIEGPWPEAGL 115 (343)
T ss_pred CeEEEEEechHHHHH
Confidence 999999999887544
No 34
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=86.37 E-value=4.4 Score=38.39 Aligned_cols=62 Identities=19% Similarity=0.231 Sum_probs=46.9
Q ss_pred CcEEEEEEEeeCCeEEEcHHHHH--HHHHH-----------cCCCcEEEEEcCCCCeeecCCEEEEEEeChhhhc
Q 029418 129 DMEVEAHFLAKEDGIIAGIALAE--MIFHE-----------VDPSLKVEWSLKDGDHVHKGLQFGKVSGKPRKIN 190 (193)
Q Consensus 129 d~~akA~IiAKEdGVlAGl~va~--~IF~~-----------ldp~leve~~v~DGd~V~kGdvIleV~G~ArsLL 190 (193)
....+..+.|.++|.+..++--. ++... .|+..-++++++=||+|++||++++|+.+-+..|
T Consensus 329 ~~~~~~~v~a~~~G~v~~id~~~ig~~~~~lGagr~~~~d~id~~aGi~l~~k~G~~V~~g~~l~~i~~~~~~~~ 403 (405)
T TIGR02644 329 KAKYKEEVKAEKSGYISEIDAEELGLAAVDLGAGRARKEDKIDHEAGIYLHKKTGDRVKKGDPLATLYSSDPISL 403 (405)
T ss_pred CCCeEEEEECCCCeEEEEechHHHHHHHHHhCCCcCCCCCCCCcCCCeEEecCCcCEeCCCCeEEEEeCCCHhhh
Confidence 34568889999999999765322 23332 4666788999999999999999999996654433
No 35
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=85.50 E-value=1.2 Score=31.00 Aligned_cols=23 Identities=22% Similarity=0.227 Sum_probs=19.5
Q ss_pred EEEEcCCCCeeecCCEEEEEEeC
Q 029418 163 VEWSLKDGDHVHKGLQFGKVSGK 185 (193)
Q Consensus 163 ve~~v~DGd~V~kGdvIleV~G~ 185 (193)
+.|+++.|+.|++|+.+++++-.
T Consensus 13 ~~~~v~~G~~V~~g~~l~~ve~~ 35 (70)
T PRK08225 13 WKIVVKVGDTVEEGQDVVILESM 35 (70)
T ss_pred EEEEeCCCCEECCCCEEEEEEcC
Confidence 46889999999999999988753
No 36
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=84.66 E-value=1.3 Score=29.22 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=20.5
Q ss_pred EE-EEEcCCCCeeecCCEEEEEEe
Q 029418 162 KV-EWSLKDGDHVHKGLQFGKVSG 184 (193)
Q Consensus 162 ev-e~~v~DGd~V~kGdvIleV~G 184 (193)
.+ +|+++.|+.|++|+.+++++.
T Consensus 9 ~v~~~~v~~G~~v~~g~~l~~i~~ 32 (67)
T cd06850 9 TVVKVLVKEGDKVEAGQPLAVLEA 32 (67)
T ss_pred EEEEEEeCCCCEECCCCEEEEEEc
Confidence 45 599999999999999999985
No 37
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=81.30 E-value=4.8 Score=38.55 Aligned_cols=59 Identities=15% Similarity=0.261 Sum_probs=45.3
Q ss_pred CcEEEEEEEeeCCeEEEcHHHH--HHHH-----------HHcCCCcEEEEEcCCCCeeecCCEEEEEEeChh
Q 029418 129 DMEVEAHFLAKEDGIIAGIALA--EMIF-----------HEVDPSLKVEWSLKDGDHVHKGLQFGKVSGKPR 187 (193)
Q Consensus 129 d~~akA~IiAKEdGVlAGl~va--~~IF-----------~~ldp~leve~~v~DGd~V~kGdvIleV~G~Ar 187 (193)
....+..+.|+++|.+.-++-- .++. ...|+..-++++++-||+|++||++++|+.+-+
T Consensus 336 ~~~~~~~v~A~~~G~v~~id~~~ig~~a~~lGaGR~~~~~~id~~aGi~l~~k~G~~V~~Gd~l~~i~~~~~ 407 (440)
T PRK05820 336 TAPHTKPVYADRSGVLSAMDTRALGMAVVRLGGGRRRKGDPIDYSVGLTLHARLGDRVDAGEPLATLHADDE 407 (440)
T ss_pred CCCeEEEEECCCCeEEEEecHHHHHHHHHHhCCCcCCCCCCCCcCCCeEEccCCcCEECCCCeEEEEeCCCH
Confidence 3456888999999999876532 3333 234567788999999999999999999995543
No 38
>COG0213 DeoA Thymidine phosphorylase [Nucleotide transport and metabolism]
Probab=80.04 E-value=5.4 Score=38.30 Aligned_cols=60 Identities=20% Similarity=0.245 Sum_probs=45.6
Q ss_pred CcEEEEEEEeeCCeEEEcHHHHH--HHHHHc-----------CCCcEEEEEcCCCCeeecCCEEEEEEeChhh
Q 029418 129 DMEVEAHFLAKEDGIIAGIALAE--MIFHEV-----------DPSLKVEWSLKDGDHVHKGLQFGKVSGKPRK 188 (193)
Q Consensus 129 d~~akA~IiAKEdGVlAGl~va~--~IF~~l-----------dp~leve~~v~DGd~V~kGdvIleV~G~Ars 188 (193)
..+-+..+.|+++|++..++-.. ++-..+ |...-+..+++-||.|++|+.|++++-..+.
T Consensus 332 ~~~~~~~v~A~~~G~v~~id~~~ig~~a~~lGAgR~~k~d~iD~~aGi~l~kk~ge~Vk~Gd~l~tiya~~~~ 404 (435)
T COG0213 332 VAKYTAEVKAQTSGYVSEIDARAIGMAAMELGAGRATKTDRIDKGAGIYLHKKLGEKVKKGDPLATIYAESEE 404 (435)
T ss_pred cCceEEEEeccCceeEEeechHHHHHHHHHhCCCCCCcccccCcccceEEEecCCCeeccCCeEEEEecCCcc
Confidence 34579999999999999865432 333333 3445678999999999999999999985443
No 39
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=79.89 E-value=2.1 Score=34.38 Aligned_cols=19 Identities=21% Similarity=0.275 Sum_probs=16.6
Q ss_pred EEcCCCCeeecCCEEEEEE
Q 029418 165 WSLKDGDHVHKGLQFGKVS 183 (193)
Q Consensus 165 ~~v~DGd~V~kGdvIleV~ 183 (193)
.+++.||.|++||+++.|+
T Consensus 84 ~~V~vGd~V~~Gq~l~IiE 102 (140)
T COG0511 84 PFVEVGDTVKAGQTLAIIE 102 (140)
T ss_pred EeeccCCEEcCCCEEEEEE
Confidence 7888999999999998886
No 40
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=79.69 E-value=5 Score=26.28 Aligned_cols=33 Identities=27% Similarity=0.434 Sum_probs=26.5
Q ss_pred EEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeecCCEEEEE
Q 029418 132 VEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKV 182 (193)
Q Consensus 132 akA~IiAKEdGVlAGl~va~~IF~~ldp~leve~~v~DGd~V~kGdvIleV 182 (193)
....+.|+.+|++. ..+.++|+.|++|+.++++
T Consensus 35 ~~~~i~ap~~G~v~------------------~~~~~~G~~V~~G~~l~~i 67 (67)
T cd06850 35 MENEVTAPVAGVVK------------------EILVKEGDQVEAGQLLVVI 67 (67)
T ss_pred EEEEEeCCCCEEEE------------------EEEECCCCEECCCCEEEEC
Confidence 45667888888776 4678899999999999874
No 41
>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion]
Probab=77.91 E-value=1.8 Score=41.78 Aligned_cols=25 Identities=28% Similarity=0.468 Sum_probs=22.2
Q ss_pred EEEEEcCCCCeeecCCEEEEEEeCh
Q 029418 162 KVEWSLKDGDHVHKGLQFGKVSGKP 186 (193)
Q Consensus 162 eve~~v~DGd~V~kGdvIleV~G~A 186 (193)
=+.|.+++||.+.+||+|+||+=+-
T Consensus 55 IvsW~kKeGdkls~GDvl~EVETDK 79 (470)
T KOG0557|consen 55 IVSWKKKEGDKLSAGDVLLEVETDK 79 (470)
T ss_pred eeeEeeccCCccCCCceEEEEeccc
Confidence 3689999999999999999998653
No 42
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=77.83 E-value=6.8 Score=37.58 Aligned_cols=59 Identities=19% Similarity=0.240 Sum_probs=45.8
Q ss_pred CcEEEEEEEeeCCeEEEcHHHHHH--HH-----------HHcCCCcEEEEEcCCCCeeecCCEEEEEEeChh
Q 029418 129 DMEVEAHFLAKEDGIIAGIALAEM--IF-----------HEVDPSLKVEWSLKDGDHVHKGLQFGKVSGKPR 187 (193)
Q Consensus 129 d~~akA~IiAKEdGVlAGl~va~~--IF-----------~~ldp~leve~~v~DGd~V~kGdvIleV~G~Ar 187 (193)
..+.+..+.|+++|.+..++-..- +. ...|+..-++++++=||+|++||++++|+.+-+
T Consensus 335 ~a~~~~~v~A~~~G~v~~id~~~ig~~~~~lGaGr~~~~d~iD~~aGi~l~~k~Gd~V~~Gd~l~~i~~~~~ 406 (437)
T TIGR02643 335 TAPLIKPVYADREGYVSEMDTRALGMAVVALGGGRRKADDTIDYSVGLTDLLPLGDRVEKGEPLAVVHAADE 406 (437)
T ss_pred CCCeEEEEECCCCeEEEEeeHHHHHHHHHHcCccccCCCCCcCcccCeEeccCCcCEeCCCCeEEEEECCCH
Confidence 345688899999999998764432 22 125666788999999999999999999996544
No 43
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=77.71 E-value=7.3 Score=37.92 Aligned_cols=60 Identities=25% Similarity=0.222 Sum_probs=46.6
Q ss_pred cEEEEEEEeeCCeEEEcHHH--HHHHHHHc----CCCcEEEEEcCCCCeeecCCEEEEEEeChhhh
Q 029418 130 MEVEAHFLAKEDGIIAGIAL--AEMIFHEV----DPSLKVEWSLKDGDHVHKGLQFGKVSGKPRKI 189 (193)
Q Consensus 130 ~~akA~IiAKEdGVlAGl~v--a~~IF~~l----dp~leve~~v~DGd~V~kGdvIleV~G~ArsL 189 (193)
..-+..+.|.++|.+..++- +.++...+ |+..-++++++=||+|++||++++|+.+....
T Consensus 410 ~~~~~~v~A~~~G~v~~id~~~i~~~a~~~GAp~d~~aGi~l~~k~Gd~V~~Gd~l~~i~a~~~~~ 475 (493)
T TIGR02645 410 GIYTADIHAETDGYVTEIDNKHITRIARLAGAPNDKGAGVELHVKVGDQVKKGDPLYTIYAESEGE 475 (493)
T ss_pred CCeEEEEEcCCCeEEEEeehHHHHHHHHHcCCCcCcCcCeEEeccCCCEecCCCeEEEEECCCHHH
Confidence 45688899999999998654 33344444 45567899999999999999999999665543
No 44
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=77.28 E-value=4.3 Score=27.86 Aligned_cols=24 Identities=33% Similarity=0.549 Sum_probs=20.9
Q ss_pred EEEEEcCCCCeeecCCEEEEEEeC
Q 029418 162 KVEWSLKDGDHVHKGLQFGKVSGK 185 (193)
Q Consensus 162 eve~~v~DGd~V~kGdvIleV~G~ 185 (193)
-.+|+++.|+.|++|+.+++++..
T Consensus 16 ~~~~~v~~G~~v~~g~~l~~ie~~ 39 (73)
T cd06663 16 VVKWLKKVGDKVKKGDVLAEIEAM 39 (73)
T ss_pred EEEEEcCCcCEECCCCEEEEEEeC
Confidence 455999999999999999998764
No 45
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=75.68 E-value=17 Score=33.34 Aligned_cols=48 Identities=21% Similarity=0.330 Sum_probs=40.8
Q ss_pred EEEEeeCCeEEEcHHHH--HHHHHHcCCCcEEEEEcCCCCeeecCCEEEEEE
Q 029418 134 AHFLAKEDGIIAGIALA--EMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVS 183 (193)
Q Consensus 134 A~IiAKEdGVlAGl~va--~~IF~~ldp~leve~~v~DGd~V~kGdvIleV~ 183 (193)
..+.++..|.+-.++.- .++.+..| +.++..+.=|++|.+|+.++++.
T Consensus 196 ~~i~a~~~GYvq~Id~~~L~~~a~~~~--~~i~l~~~~G~fV~~g~pl~~v~ 245 (371)
T PF10011_consen 196 QPIRAPRSGYVQAIDYDRLVELAEEHD--VVIRLEVRPGDFVVEGTPLARVW 245 (371)
T ss_pred eEEecCCCcEEEEecHHHHHHHHHHCC--cEEEEEeCCCCeECCCCeEEEEe
Confidence 34999999999998874 44555555 89999999999999999999995
No 46
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=75.20 E-value=3.2 Score=39.35 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCeeecCCEEEEEEeC
Q 029418 161 LKVEWSLKDGDHVHKGLQFGKVSGK 185 (193)
Q Consensus 161 leve~~v~DGd~V~kGdvIleV~G~ 185 (193)
.=++|++++||.|++||.+++++-+
T Consensus 60 ~I~~w~v~~Gd~V~~Gd~L~~vEtd 84 (418)
T PTZ00144 60 TVVEWKKKVGDYVKEDEVICIIETD 84 (418)
T ss_pred EEEEEEeCCCCEeCCCCEEEEEEEc
Confidence 3568999999999999999999764
No 47
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=74.70 E-value=3.5 Score=28.54 Aligned_cols=21 Identities=19% Similarity=0.395 Sum_probs=18.4
Q ss_pred EEEEcCCCCeeecCCEEEEEE
Q 029418 163 VEWSLKDGDHVHKGLQFGKVS 183 (193)
Q Consensus 163 ve~~v~DGd~V~kGdvIleV~ 183 (193)
.++++++|+.|++|+.|++++
T Consensus 50 ~~~~~~~G~~V~~g~~l~~ie 70 (70)
T PRK08225 50 KKINVQEGDFVNEGDVLLEIE 70 (70)
T ss_pred EEEEecCCCEECCCCEEEEEC
Confidence 367899999999999999874
No 48
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=74.42 E-value=3.7 Score=33.82 Aligned_cols=22 Identities=14% Similarity=0.234 Sum_probs=19.7
Q ss_pred EEEcCCCCeeecCCEEEEEEeC
Q 029418 164 EWSLKDGDHVHKGLQFGKVSGK 185 (193)
Q Consensus 164 e~~v~DGd~V~kGdvIleV~G~ 185 (193)
+|++++||.|++||.++.++..
T Consensus 97 ~~~V~~Gd~V~~Gq~l~~iEam 118 (153)
T PRK05641 97 RILVREGQQVKVGQGLLILEAM 118 (153)
T ss_pred EEEeCCCCEEcCCCEEEEEeec
Confidence 6899999999999999998754
No 49
>PRK04350 thymidine phosphorylase; Provisional
Probab=74.40 E-value=10 Score=36.93 Aligned_cols=61 Identities=20% Similarity=0.200 Sum_probs=47.0
Q ss_pred CcEEEEEEEeeCCeEEEcHHH--HHHHHHHc----CCCcEEEEEcCCCCeeecCCEEEEEEeChhhh
Q 029418 129 DMEVEAHFLAKEDGIIAGIAL--AEMIFHEV----DPSLKVEWSLKDGDHVHKGLQFGKVSGKPRKI 189 (193)
Q Consensus 129 d~~akA~IiAKEdGVlAGl~v--a~~IF~~l----dp~leve~~v~DGd~V~kGdvIleV~G~ArsL 189 (193)
...-+..+.|.++|.+..++- +.++...+ |+..-++++++=||+|++||.+++|+.+-+..
T Consensus 401 ~a~~~~~v~A~~~G~v~~id~~~ig~~a~~lGap~d~~aGi~l~~k~Gd~V~~G~~l~~i~a~~~~~ 467 (490)
T PRK04350 401 LGDHTHDVTAPRDGYVTAIDNRRLARIARLAGAPKDKGAGIDLHVKVGDKVKKGDPLYTIHAESEGE 467 (490)
T ss_pred CCCeEEEEECCCCeEEEEeehHHHHHHHHHcCCCcCcccCeEEeccCCCEecCCCeEEEEecCCHHH
Confidence 345688899999999998764 33344444 45567899999999999999999999665443
No 50
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=74.16 E-value=12 Score=36.57 Aligned_cols=60 Identities=22% Similarity=0.199 Sum_probs=46.5
Q ss_pred CcEEEEEEEeeCCeEEEcHHHH--HHHHHHc----CCCcEEEEEcCCCCeeecCCEEEEEEeChhh
Q 029418 129 DMEVEAHFLAKEDGIIAGIALA--EMIFHEV----DPSLKVEWSLKDGDHVHKGLQFGKVSGKPRK 188 (193)
Q Consensus 129 d~~akA~IiAKEdGVlAGl~va--~~IF~~l----dp~leve~~v~DGd~V~kGdvIleV~G~Ars 188 (193)
...-+..+.|.++|.+..++-- .++...+ |+..-++.+++=||+|++||.+++|+.+-+.
T Consensus 410 ~a~~~~~v~A~~~G~v~~id~~~ig~~a~~lGA~id~~aGi~l~~k~Gd~V~~G~pl~~i~a~~~~ 475 (500)
T TIGR03327 410 VGDYTYTITAPTDGYVTDIDNKAITQIAREAGAPNDKGAGVYLHVKVGEKVKKGDPLYTIYAESEW 475 (500)
T ss_pred CCCeEEEEECCCCeEEEEeehHHHHHHHHHcCCCcCcccCeEEeccCcCEeCCCCeEEEEECCCHH
Confidence 3456888999999999987643 3344444 4556789999999999999999999966543
No 51
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=73.95 E-value=2.1 Score=38.05 Aligned_cols=36 Identities=17% Similarity=0.282 Sum_probs=25.9
Q ss_pred HHHHHHHcCCCcEEEEEcCCCCeeecCCEEEEEEeCh
Q 029418 150 AEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGKP 186 (193)
Q Consensus 150 a~~IF~~ldp~leve~~v~DGd~V~kGdvIleV~G~A 186 (193)
+..+....++ .-.++++++|+.|++|++++++.-..
T Consensus 43 ~~~v~~~~~G-~v~~i~V~eG~~V~kG~~L~~ld~~~ 78 (423)
T TIGR01843 43 VKVVQHLEGG-IVREILVREGDRVKAGQVLVELDATD 78 (423)
T ss_pred eeecccCCCc-EEEEEEeCCCCEecCCCeEEEEccch
Confidence 3334444432 33479999999999999999997654
No 52
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=73.74 E-value=20 Score=34.37 Aligned_cols=58 Identities=22% Similarity=0.294 Sum_probs=44.5
Q ss_pred CcEEEEEEEeeCCeEEEcHHHHH--HHHHHc-----------CCCcEEEEEcCCCCeeecCCEEEEEEeCh
Q 029418 129 DMEVEAHFLAKEDGIIAGIALAE--MIFHEV-----------DPSLKVEWSLKDGDHVHKGLQFGKVSGKP 186 (193)
Q Consensus 129 d~~akA~IiAKEdGVlAGl~va~--~IF~~l-----------dp~leve~~v~DGd~V~kGdvIleV~G~A 186 (193)
..+.+..+.|.++|.+..++--. ++...+ |+..-++++++-||+|++||++++|+.+.
T Consensus 331 ~~~~~~~v~a~~~G~v~~id~~~ig~~~~~lGagr~~~~d~id~~aGi~l~~k~g~~V~~g~~l~~i~~~~ 401 (434)
T PRK06078 331 QAKYQIEVPAKESGYISELVADEIGLAAMLLGAGRATKEDEIDLAVGIVLRKKVGDSVKKGESLATIYANR 401 (434)
T ss_pred CCCeEEEEECCCCeEEEEeeHHHHHHHHHHcCCCCCCCCCccCcccCeEeccCCcCEeCCCCeEEEEeCCh
Confidence 44568889999999999865432 333343 44567899999999999999999999543
No 53
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=73.39 E-value=3.8 Score=32.59 Aligned_cols=22 Identities=18% Similarity=0.277 Sum_probs=19.9
Q ss_pred EEEEEcCCCCeeecCCEEEEEE
Q 029418 162 KVEWSLKDGDHVHKGLQFGKVS 183 (193)
Q Consensus 162 eve~~v~DGd~V~kGdvIleV~ 183 (193)
-++.+++.||+|++||.++++.
T Consensus 81 gF~~~v~~Gd~V~~G~~l~~~D 102 (121)
T TIGR00830 81 GFTSHVEEGQRVKKGDPLLEFD 102 (121)
T ss_pred ceEEEecCCCEEcCCCEEEEEc
Confidence 4788899999999999999985
No 54
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=72.49 E-value=3.7 Score=35.08 Aligned_cols=24 Identities=29% Similarity=0.576 Sum_probs=17.7
Q ss_pred EEEEEcCCCCeeecCCEEEEEEeC
Q 029418 162 KVEWSLKDGDHVHKGLQFGKVSGK 185 (193)
Q Consensus 162 eve~~v~DGd~V~kGdvIleV~G~ 185 (193)
.+++++++|++|++|++|+++.-+
T Consensus 31 ~v~~~v~~G~~V~kG~~L~~ld~~ 54 (328)
T PF12700_consen 31 RVSVNVKEGDKVKKGQVLAELDSS 54 (328)
T ss_dssp EEEE-S-TTSEEETT-EEEEEE-H
T ss_pred EEEEEeCCcCEECCCCEEEEEECh
Confidence 448999999999999999999754
No 55
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=71.29 E-value=4.4 Score=39.02 Aligned_cols=25 Identities=12% Similarity=0.207 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCeeecCCEEEEEEeC
Q 029418 161 LKVEWSLKDGDHVHKGLQFGKVSGK 185 (193)
Q Consensus 161 leve~~v~DGd~V~kGdvIleV~G~ 185 (193)
.=++|++++||.|++||.|++|+-+
T Consensus 107 ~I~~w~v~~GD~V~~Gq~L~~VEtd 131 (463)
T PLN02226 107 TLATFLKKPGERVQADEAIAQIETD 131 (463)
T ss_pred EEEEEEeCCCCEecCCCEEEEEEec
Confidence 3467889999999999999988653
No 56
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=70.47 E-value=4.9 Score=32.10 Aligned_cols=22 Identities=14% Similarity=0.277 Sum_probs=19.6
Q ss_pred EEEEEcCCCCeeecCCEEEEEE
Q 029418 162 KVEWSLKDGDHVHKGLQFGKVS 183 (193)
Q Consensus 162 eve~~v~DGd~V~kGdvIleV~ 183 (193)
-++.++++||+|++||.|+++-
T Consensus 81 gF~~~vk~Gd~V~~G~~l~~~D 102 (124)
T cd00210 81 GFTSHVEEGQRVKQGDKLLEFD 102 (124)
T ss_pred ceEEEecCCCEEcCCCEEEEEc
Confidence 4778899999999999999874
No 57
>cd06848 GCS_H Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.
Probab=70.09 E-value=12 Score=27.66 Aligned_cols=41 Identities=22% Similarity=0.171 Sum_probs=29.2
Q ss_pred EEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeecCCEEEEEEeCh
Q 029418 143 IIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGKP 186 (193)
Q Consensus 143 VlAGl~va~~IF~~ldp~leve~~v~DGd~V~kGdvIleV~G~A 186 (193)
+--|+.-.. .+.+|. +..-++.+.|+.|++|+.++++++.-
T Consensus 16 ~~lGlt~~~--~~~lG~-i~~i~~~~~G~~v~~g~~l~~iEs~k 56 (96)
T cd06848 16 ATVGITDYA--QDLLGD-IVFVELPEVGTEVKKGDPFGSVESVK 56 (96)
T ss_pred EEEeeCHHH--HhhCCC-EEEEEecCCCCEEeCCCEEEEEEEcc
Confidence 335543332 445663 67777888899999999999999753
No 58
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=69.50 E-value=5.8 Score=31.96 Aligned_cols=21 Identities=14% Similarity=0.135 Sum_probs=18.6
Q ss_pred EEEcCCCCeeecCCEEEEEEe
Q 029418 164 EWSLKDGDHVHKGLQFGKVSG 184 (193)
Q Consensus 164 e~~v~DGd~V~kGdvIleV~G 184 (193)
+|++++|+.|++||.+++++-
T Consensus 74 ~i~V~~Gd~V~~Gq~L~~lEa 94 (130)
T PRK06549 74 KVLVAVGDQVTENQPLLILEA 94 (130)
T ss_pred EEEeCCCCEECCCCEEEEEec
Confidence 589999999999999998864
No 59
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=68.03 E-value=4.9 Score=34.99 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=19.5
Q ss_pred EEEcCCCCeeecCCEEEEEEeC
Q 029418 164 EWSLKDGDHVHKGLQFGKVSGK 185 (193)
Q Consensus 164 e~~v~DGd~V~kGdvIleV~G~ 185 (193)
++++++|+.|+|||+++++.-+
T Consensus 55 ~i~v~~G~~V~kGq~L~~ld~~ 76 (334)
T TIGR00998 55 EVNVDDTDYVKQGDVLVRLDPT 76 (334)
T ss_pred EEEeCCCCEEcCCCEEEEECch
Confidence 5789999999999999999754
No 60
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=66.94 E-value=5.3 Score=35.54 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=20.1
Q ss_pred EEEEcCCCCeeecCCEEEEEEeC
Q 029418 163 VEWSLKDGDHVHKGLQFGKVSGK 185 (193)
Q Consensus 163 ve~~v~DGd~V~kGdvIleV~G~ 185 (193)
.+.++++|+.|+|||+|+++.-.
T Consensus 60 ~~v~V~~G~~VkkGq~L~~ld~~ 82 (346)
T PRK10476 60 VELAVTENQAVKKGDLLFRIDPR 82 (346)
T ss_pred EEEEeCCCCEEcCCCEEEEECcH
Confidence 45789999999999999999754
No 61
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=66.86 E-value=5.6 Score=36.49 Aligned_cols=23 Identities=13% Similarity=0.092 Sum_probs=19.6
Q ss_pred EEEEcCCCCeeecCCEEEEEEeC
Q 029418 163 VEWSLKDGDHVHKGLQFGKVSGK 185 (193)
Q Consensus 163 ve~~v~DGd~V~kGdvIleV~G~ 185 (193)
.++++++|+.|+|||+++++.-.
T Consensus 73 ~~v~V~~Gd~VkkGqvL~~LD~~ 95 (390)
T PRK15136 73 TKVWADNTDFVKEGDVLVTLDPT 95 (390)
T ss_pred EEEEcCCCCEECCCCEEEEECcH
Confidence 35689999999999999999743
No 62
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=66.60 E-value=5.3 Score=35.50 Aligned_cols=23 Identities=17% Similarity=0.235 Sum_probs=20.1
Q ss_pred EEEEcCCCCeeecCCEEEEEEeC
Q 029418 163 VEWSLKDGDHVHKGLQFGKVSGK 185 (193)
Q Consensus 163 ve~~v~DGd~V~kGdvIleV~G~ 185 (193)
.++++++|+.|+|||+++++.-+
T Consensus 59 ~~v~V~~Gd~VkkGqvLa~Ld~~ 81 (310)
T PRK10559 59 TQVNVHDNQLVKKGQVLFTIDQP 81 (310)
T ss_pred EEEEeCCcCEEcCCCEEEEECcH
Confidence 46789999999999999999754
No 63
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=66.47 E-value=6.5 Score=33.01 Aligned_cols=22 Identities=14% Similarity=0.163 Sum_probs=19.5
Q ss_pred EEEEEcCCCCeeecCCEEEEEE
Q 029418 162 KVEWSLKDGDHVHKGLQFGKVS 183 (193)
Q Consensus 162 eve~~v~DGd~V~kGdvIleV~ 183 (193)
-++.++++||+|++||.++++-
T Consensus 103 gF~~~Vk~Gd~Vk~G~~L~~~D 124 (169)
T PRK09439 103 GFKRIAEEGQRVKVGDPIIEFD 124 (169)
T ss_pred ceEEEecCCCEEeCCCEEEEEc
Confidence 4788899999999999999874
No 64
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=66.12 E-value=4.5 Score=35.66 Aligned_cols=23 Identities=22% Similarity=0.515 Sum_probs=20.6
Q ss_pred EEEEcCCCCeeecCCEEEEEEeC
Q 029418 163 VEWSLKDGDHVHKGLQFGKVSGK 185 (193)
Q Consensus 163 ve~~v~DGd~V~kGdvIleV~G~ 185 (193)
.++++++||.|++||+|+++..+
T Consensus 55 ~~i~v~~Gd~V~kG~~L~~ld~~ 77 (331)
T PRK03598 55 ASLAVDEGDAVKAGQVLGELDAA 77 (331)
T ss_pred EEEEcCCCCEEcCCCEEEEEChH
Confidence 46789999999999999999876
No 65
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=64.69 E-value=5.6 Score=32.05 Aligned_cols=22 Identities=27% Similarity=0.370 Sum_probs=17.3
Q ss_pred EEEEEcCCCCeeecCCEEEEEE
Q 029418 162 KVEWSLKDGDHVHKGLQFGKVS 183 (193)
Q Consensus 162 eve~~v~DGd~V~kGdvIleV~ 183 (193)
-++++++.|++|++||.++++-
T Consensus 85 gF~~~v~~G~~V~~G~~L~~~D 106 (132)
T PF00358_consen 85 GFETLVKEGDKVKAGQPLIEFD 106 (132)
T ss_dssp TEEESS-TTSEE-TTEEEEEE-
T ss_pred ceEEEEeCCCEEECCCEEEEEc
Confidence 4788999999999999999874
No 66
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=63.37 E-value=5.8 Score=36.04 Aligned_cols=22 Identities=27% Similarity=0.235 Sum_probs=19.8
Q ss_pred EEEcCCCCeeecCCEEEEEEeC
Q 029418 164 EWSLKDGDHVHKGLQFGKVSGK 185 (193)
Q Consensus 164 e~~v~DGd~V~kGdvIleV~G~ 185 (193)
.|+++.||.|++||+|+.|+..
T Consensus 217 ~w~VkvGDsVkkGQvLavIEAM 238 (274)
T PLN02983 217 PPFVKVGDKVQKGQVVCIIEAM 238 (274)
T ss_pred cceeCCCCEecCCCEEEEEEee
Confidence 5899999999999999999754
No 67
>PRK12484 nicotinate phosphoribosyltransferase; Provisional
Probab=63.32 E-value=16 Score=34.80 Aligned_cols=56 Identities=14% Similarity=0.077 Sum_probs=39.8
Q ss_pred EEEEEEeeC------CeEEEcHHHHHHHHHHcCC---------------------------CcEEEEEcCCCCeeecCCE
Q 029418 132 VEAHFLAKE------DGIIAGIALAEMIFHEVDP---------------------------SLKVEWSLKDGDHVHKGLQ 178 (193)
Q Consensus 132 akA~IiAKE------dGVlAGl~va~~IF~~ldp---------------------------~leve~~v~DGd~V~kGdv 178 (193)
+...++.|. -.|+||++.+-..++.+.- ..++ ..++||+.|.+++.
T Consensus 28 ~~fe~~~R~~p~~~~~~v~aGl~~~l~~L~~~~ft~eei~yl~~~~~f~~~f~~~L~~~~~~~~I-~A~~EG~~v~~~ep 106 (443)
T PRK12484 28 ATFSLFYRKLPDGRGFLIAAGLADVVEFLEAFRFDEQDLRYLRGLNQFSEEFLAWLAGLRFTGDV-RAVPEGTVVFPNEP 106 (443)
T ss_pred EEEEEEECCCCCCCceehHHHHHHHHHHHhcCCCCHHHHHHHHHcCCCCHHHHHHHHhCCCCceE-EEEeCCeeecCCcE
Confidence 555566655 4568999998877765420 0122 34579999999999
Q ss_pred EEEEEeChhh
Q 029418 179 FGKVSGKPRK 188 (193)
Q Consensus 179 IleV~G~Ars 188 (193)
+++|+|+...
T Consensus 107 ~l~Iegp~~e 116 (443)
T PRK12484 107 LLEVTAPLIE 116 (443)
T ss_pred EEEEEEchHH
Confidence 9999999653
No 68
>PRK07051 hypothetical protein; Validated
Probab=62.98 E-value=10 Score=27.21 Aligned_cols=20 Identities=25% Similarity=0.607 Sum_probs=17.8
Q ss_pred EEEcCCCCeeecCCEEEEEE
Q 029418 164 EWSLKDGDHVHKGLQFGKVS 183 (193)
Q Consensus 164 e~~v~DGd~V~kGdvIleV~ 183 (193)
++++++|+.|++|+.++++.
T Consensus 60 ~i~~~~G~~V~~G~~l~~i~ 79 (80)
T PRK07051 60 EFLVEDGEPVEAGQVLARIE 79 (80)
T ss_pred EEEcCCcCEECCCCEEEEEe
Confidence 57789999999999999884
No 69
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain
Probab=62.49 E-value=5.8 Score=30.47 Aligned_cols=25 Identities=32% Similarity=0.359 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCeeecCCEEEEEEeC
Q 029418 161 LKVEWSLKDGDHVHKGLQFGKVSGK 185 (193)
Q Consensus 161 leve~~v~DGd~V~kGdvIleV~G~ 185 (193)
...+..++.||+|++||.|++..|.
T Consensus 40 ~~~~p~V~~Gd~V~~GQ~Ia~~~~~ 64 (101)
T PF13375_consen 40 APAEPVVKVGDKVKKGQLIAEAEGF 64 (101)
T ss_pred CcceEEEcCCCEEcCCCEEEecCCC
Confidence 5678899999999999999998874
No 70
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=62.12 E-value=8 Score=32.38 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=19.3
Q ss_pred EEEEEcCCCCeeecCCEEEEEE
Q 029418 162 KVEWSLKDGDHVHKGLQFGKVS 183 (193)
Q Consensus 162 eve~~v~DGd~V~kGdvIleV~ 183 (193)
-++.++++||+|++||.++++-
T Consensus 88 gF~~~v~~Gd~Vk~Gd~Li~fD 109 (156)
T COG2190 88 GFESLVKEGDKVKAGDPLLEFD 109 (156)
T ss_pred ceEEEeeCCCEEccCCEEEEEC
Confidence 4678899999999999999873
No 71
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=61.35 E-value=6.6 Score=36.59 Aligned_cols=53 Identities=15% Similarity=0.154 Sum_probs=31.8
Q ss_pred EEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeecCCEEEEEEeC
Q 029418 132 VEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGK 185 (193)
Q Consensus 132 akA~IiAKEdGVlAGl~va~~IF~~ldp~leve~~v~DGd~V~kGdvIleV~G~ 185 (193)
++...+++-.|.+--..-... .+-..+++--+++++|||.|++||+++++.-.
T Consensus 41 ~~~~~~v~a~G~v~p~~~~~~-vq~~~~G~v~~i~V~eG~~V~~G~~L~~ld~~ 93 (457)
T TIGR01000 41 AKKEIVIRTTGTIEPAKILSK-IQSTSNNAIKENYLKENKFVKKGDLLVVYDNG 93 (457)
T ss_pred EeeeEEEEEeEEEEecCceEE-EEcCCCcEEEEEEcCCCCEecCCCEEEEECch
Confidence 344444555554432211111 22233345557899999999999999998654
No 72
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=60.84 E-value=7.4 Score=33.13 Aligned_cols=22 Identities=23% Similarity=0.542 Sum_probs=19.5
Q ss_pred EEEcCCCCeeecCCEEEEEEeC
Q 029418 164 EWSLKDGDHVHKGLQFGKVSGK 185 (193)
Q Consensus 164 e~~v~DGd~V~kGdvIleV~G~ 185 (193)
++++++|+.|++||.|+++.-+
T Consensus 39 ~i~v~~G~~V~kG~~L~~l~~~ 60 (322)
T TIGR01730 39 KISVREGQKVKKGQVLARLDDD 60 (322)
T ss_pred EEEcCCCCEEcCCCEEEEECCH
Confidence 4678999999999999999765
No 73
>PRK07051 hypothetical protein; Validated
Probab=59.84 E-value=9.3 Score=27.44 Aligned_cols=22 Identities=23% Similarity=0.149 Sum_probs=19.8
Q ss_pred EEEcCCCCeeecCCEEEEEEeC
Q 029418 164 EWSLKDGDHVHKGLQFGKVSGK 185 (193)
Q Consensus 164 e~~v~DGd~V~kGdvIleV~G~ 185 (193)
.+++++|+.|++|+.+++++..
T Consensus 23 ~~~v~~Gd~V~~g~~l~~ve~~ 44 (80)
T PRK07051 23 PPYVEVGDAVAAGDVVGLIEVM 44 (80)
T ss_pred CCccCCCCEECCCCEEEEEEEc
Confidence 4789999999999999999875
No 74
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=59.19 E-value=8 Score=31.66 Aligned_cols=23 Identities=26% Similarity=0.240 Sum_probs=19.7
Q ss_pred EEEEEcCCCCeeecCCEEEEEEe
Q 029418 162 KVEWSLKDGDHVHKGLQFGKVSG 184 (193)
Q Consensus 162 eve~~v~DGd~V~kGdvIleV~G 184 (193)
.-.|+++.||.|++||+++.++-
T Consensus 98 ~~~~~v~~Gd~V~~Gq~l~iiEa 120 (156)
T TIGR00531 98 DAKPFVEVGDKVKKGQIVCIVEA 120 (156)
T ss_pred CCCccccCCCEeCCCCEEEEEEe
Confidence 44588999999999999998864
No 75
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=58.85 E-value=8.8 Score=30.76 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCeeecCCEEEEEE
Q 029418 161 LKVEWSLKDGDHVHKGLQFGKVS 183 (193)
Q Consensus 161 leve~~v~DGd~V~kGdvIleV~ 183 (193)
.-.++++++|+.|+.||++++|+
T Consensus 117 ~V~~Ilv~~G~~Ve~G~~L~~I~ 139 (140)
T COG0511 117 VVKEILVKNGDPVEYGDPLAVIE 139 (140)
T ss_pred EEEEEEecCCCccCCCCEEEEec
Confidence 44577899999999999999986
No 76
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=58.82 E-value=8.2 Score=35.41 Aligned_cols=23 Identities=22% Similarity=0.430 Sum_probs=19.8
Q ss_pred EEEEcCCCCeeecCCEEEEEEeC
Q 029418 163 VEWSLKDGDHVHKGLQFGKVSGK 185 (193)
Q Consensus 163 ve~~v~DGd~V~kGdvIleV~G~ 185 (193)
.+.++++|+.|+|||+++++.-+
T Consensus 70 ~~i~V~eG~~V~kGq~L~~l~~~ 92 (421)
T TIGR03794 70 IDLDVEVGDQVKKGQVVARLFQP 92 (421)
T ss_pred EEEECCCcCEECCCCEEEEECcH
Confidence 35689999999999999999754
No 77
>TIGR01513 NAPRTase_put putative nicotinate phosphoribosyltransferase. Most members of this family are Gram-positive bacteria. An additional set of mutually closely related archaeal sequences score between the trusted and noise cutoffs.
Probab=58.19 E-value=16 Score=34.81 Aligned_cols=58 Identities=12% Similarity=0.092 Sum_probs=40.9
Q ss_pred EEEEEEEeeC------CeEEEcHHHHHHHHHHcC-------------------------CCcEEEEE-cCCCCeeecCCE
Q 029418 131 EVEAHFLAKE------DGIIAGIALAEMIFHEVD-------------------------PSLKVEWS-LKDGDHVHKGLQ 178 (193)
Q Consensus 131 ~akA~IiAKE------dGVlAGl~va~~IF~~ld-------------------------p~leve~~-v~DGd~V~kGdv 178 (193)
.++..++.|. -.|++|++.+...++.+. -.+.+++. ++||+.|.+++.
T Consensus 24 ~~~fe~~~R~~p~~~~~~v~~GL~~~l~~L~~~~ft~eei~yl~~~~~f~~~f~~~L~~~~~~~~I~A~~EG~~v~~~ep 103 (443)
T TIGR01513 24 PAVFEVFFRKLPFGRGYAVFAGLEDLLEFLENFRFDAEDIEYLASLGIFDDAFLDYLREFRFSGTVRALPEGSLVFPNEP 103 (443)
T ss_pred eEEEEEEECCCCCCcchhHHHHHHHHHHHHhcCCCCHHHHHHHHhCCCCCHHHHHHHHhCCCCcEEEEecCCccccCCcE
Confidence 4667777766 347799988877665530 01223343 799999999999
Q ss_pred EEEEEeChhh
Q 029418 179 FGKVSGKPRK 188 (193)
Q Consensus 179 IleV~G~Ars 188 (193)
+++|+|+...
T Consensus 104 ~l~Iegp~~~ 113 (443)
T TIGR01513 104 LLQVEGPLIE 113 (443)
T ss_pred EEEEEEchHH
Confidence 9999999653
No 78
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=57.59 E-value=9.1 Score=37.73 Aligned_cols=24 Identities=29% Similarity=0.299 Sum_probs=21.3
Q ss_pred EEEEEcCCCCeeecCCEEEEEEeC
Q 029418 162 KVEWSLKDGDHVHKGLQFGKVSGK 185 (193)
Q Consensus 162 eve~~v~DGd~V~kGdvIleV~G~ 185 (193)
-++|++++||.|++||.|++++-+
T Consensus 221 v~~w~v~~Gd~V~~g~~l~~vetd 244 (633)
T PRK11854 221 VTEVMVKVGDKVEAEQSLITVEGD 244 (633)
T ss_pred EEEEEecCCCeecCCCceEEEEec
Confidence 478999999999999999998754
No 79
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=56.20 E-value=12 Score=36.77 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCeeecCCEEEEEEeC
Q 029418 161 LKVEWSLKDGDHVHKGLQFGKVSGK 185 (193)
Q Consensus 161 leve~~v~DGd~V~kGdvIleV~G~ 185 (193)
.-++|+++.||.|++||.|++++-+
T Consensus 151 ~i~~w~v~~Gd~V~~g~~l~~vEtd 175 (590)
T TIGR02927 151 TITQWLKAVGDKIEVDEPILEVSTD 175 (590)
T ss_pred EEEEEEeCCCCEecCCCEeEEEEec
Confidence 3468999999999999999998765
No 80
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=55.93 E-value=11 Score=36.97 Aligned_cols=24 Identities=29% Similarity=0.491 Sum_probs=20.7
Q ss_pred EEEEEcCCCCeeecCCEEEEEEeC
Q 029418 162 KVEWSLKDGDHVHKGLQFGKVSGK 185 (193)
Q Consensus 162 eve~~v~DGd~V~kGdvIleV~G~ 185 (193)
-++|++++||.|++||.+++++-+
T Consensus 129 I~~W~vkeGD~V~~g~~l~eVETD 152 (539)
T PLN02744 129 IARWLKKEGDKVSPGEVLCEVETD 152 (539)
T ss_pred EEEEEecCCCEecCCCeeEEEeec
Confidence 468999999999999999998654
No 81
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=55.49 E-value=9.4 Score=31.16 Aligned_cols=23 Identities=17% Similarity=0.224 Sum_probs=20.3
Q ss_pred EEEEEcCCCCeeecCCEEEEEEe
Q 029418 162 KVEWSLKDGDHVHKGLQFGKVSG 184 (193)
Q Consensus 162 eve~~v~DGd~V~kGdvIleV~G 184 (193)
.-.|+++.|+.|++||+|+.++.
T Consensus 97 ~~~~~v~~Gd~V~~Gq~l~~iEa 119 (155)
T PRK06302 97 DAPPFVEVGDTVKEGQTLCIIEA 119 (155)
T ss_pred CCCcccCCCCEeCCCCEEEEEEe
Confidence 45688999999999999999876
No 82
>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]
Probab=55.34 E-value=12 Score=31.38 Aligned_cols=25 Identities=28% Similarity=0.500 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCeeecCCEEEEEEe
Q 029418 160 SLKVEWSLKDGDHVHKGLQFGKVSG 184 (193)
Q Consensus 160 ~leve~~v~DGd~V~kGdvIleV~G 184 (193)
+.-.++++++|+.|++|+.++++.-
T Consensus 75 G~v~~i~v~~G~~Vk~Gq~L~~ld~ 99 (372)
T COG0845 75 GIVAEILVKEGDRVKKGQLLARLDP 99 (372)
T ss_pred cEEEEEEccCCCeecCCCEEEEECC
Confidence 3567889999999999999999875
No 83
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=55.10 E-value=11 Score=33.72 Aligned_cols=21 Identities=29% Similarity=0.381 Sum_probs=18.8
Q ss_pred EEEcCCCCeeecCCEEEEEEe
Q 029418 164 EWSLKDGDHVHKGLQFGKVSG 184 (193)
Q Consensus 164 e~~v~DGd~V~kGdvIleV~G 184 (193)
++++++|+.|++||+|+++.-
T Consensus 74 ~v~v~~G~~V~kG~~L~~ld~ 94 (370)
T PRK11578 74 TLSVAIGDKVKKDQLLGVIDP 94 (370)
T ss_pred EEEcCCCCEEcCCCEEEEECc
Confidence 467999999999999999964
No 84
>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process
Probab=55.07 E-value=10 Score=33.99 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCeeecCCEEEEE
Q 029418 161 LKVEWSLKDGDHVHKGLQFGKV 182 (193)
Q Consensus 161 leve~~v~DGd~V~kGdvIleV 182 (193)
++.+..+++||+|++||.+++=
T Consensus 39 ~~Pkm~VkeGD~Vk~Gq~LF~d 60 (257)
T PF05896_consen 39 MKPKMLVKEGDRVKAGQPLFED 60 (257)
T ss_pred CCccEEeccCCEEeCCCeeEee
Confidence 8889999999999999998863
No 85
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=54.57 E-value=13 Score=35.95 Aligned_cols=26 Identities=27% Similarity=0.400 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCeeecCCEEEEEEeCh
Q 029418 161 LKVEWSLKDGDHVHKGLQFGKVSGKP 186 (193)
Q Consensus 161 leve~~v~DGd~V~kGdvIleV~G~A 186 (193)
.-.+|++++||.|++|+.|++++.+-
T Consensus 134 ~i~~w~v~~Gd~V~~g~~l~~vetdK 159 (547)
T PRK11855 134 EVIEWLVKVGDTVEEDQSLITVETDK 159 (547)
T ss_pred EEeEEEeCCCCeecCCCeeEEEEecc
Confidence 45789999999999999999998763
No 86
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=54.55 E-value=12 Score=33.90 Aligned_cols=21 Identities=14% Similarity=0.360 Sum_probs=18.5
Q ss_pred EEEcCCCCeeecCCEEEEEEe
Q 029418 164 EWSLKDGDHVHKGLQFGKVSG 184 (193)
Q Consensus 164 e~~v~DGd~V~kGdvIleV~G 184 (193)
++++++|+.|+|||+++++.-
T Consensus 76 ~v~v~~Gd~VkkGq~La~ld~ 96 (385)
T PRK09578 76 ARTYEEGQEVKQGAVLFRIDP 96 (385)
T ss_pred EEECCCCCEEcCCCEEEEECC
Confidence 468899999999999999954
No 87
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=54.52 E-value=13 Score=36.63 Aligned_cols=23 Identities=17% Similarity=0.232 Sum_probs=20.7
Q ss_pred EEEEEcCCCCeeecCCEEEEEEe
Q 029418 162 KVEWSLKDGDHVHKGLQFGKVSG 184 (193)
Q Consensus 162 eve~~v~DGd~V~kGdvIleV~G 184 (193)
-++|++++||.|++||.++.++-
T Consensus 528 v~~~~V~~Gd~V~~G~~l~~iEa 550 (582)
T TIGR01108 528 IVKVKVSEGQTVAEGEVLLILEA 550 (582)
T ss_pred EEEEEeCCCCEECCCCEEEEEEe
Confidence 45899999999999999999874
No 88
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=54.48 E-value=12 Score=34.00 Aligned_cols=22 Identities=18% Similarity=0.380 Sum_probs=19.1
Q ss_pred EEEcCCCCeeecCCEEEEEEeC
Q 029418 164 EWSLKDGDHVHKGLQFGKVSGK 185 (193)
Q Consensus 164 e~~v~DGd~V~kGdvIleV~G~ 185 (193)
..++++|+.|+|||+++++.-+
T Consensus 74 ~i~v~~G~~VkkGqvLa~ld~~ 95 (385)
T PRK09859 74 KRNFIEGDKVNQGDSLYQIDPA 95 (385)
T ss_pred EEEcCCcCEecCCCEEEEECcH
Confidence 4678999999999999999743
No 89
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=54.42 E-value=11 Score=36.54 Aligned_cols=25 Identities=20% Similarity=0.190 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCeeecCCEEEEEEeC
Q 029418 161 LKVEWSLKDGDHVHKGLQFGKVSGK 185 (193)
Q Consensus 161 leve~~v~DGd~V~kGdvIleV~G~ 185 (193)
.-++|+++.||.|++||.+++++-+
T Consensus 131 ~i~~w~v~~Gd~V~~g~~l~~vetd 155 (546)
T TIGR01348 131 TVIEVLVKVGDTVSADQSLITLESD 155 (546)
T ss_pred EEeEEeeCCCCcccCCCeeEEEEec
Confidence 4578999999999999999998743
No 90
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=53.97 E-value=12 Score=26.36 Aligned_cols=35 Identities=31% Similarity=0.456 Sum_probs=28.1
Q ss_pred cEEEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeecCCEEEEE
Q 029418 130 MEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKV 182 (193)
Q Consensus 130 ~~akA~IiAKEdGVlAGl~va~~IF~~ldp~leve~~v~DGd~V~kGdvIleV 182 (193)
.+....+.|..+|++. ++++++|+.|..|+.++++
T Consensus 40 ~K~~~~v~a~~~G~i~------------------~i~v~~G~~V~~G~~l~~I 74 (74)
T PF00364_consen 40 MKMEMEVEAPVSGIIK------------------EILVEEGDTVEVGQVLAII 74 (74)
T ss_dssp SSEEEEEEBSSSEEEE------------------EESSTTTEEEETTSEEEEE
T ss_pred CccceEEECCCCEEEE------------------EEEECCCCEECCCCEEEEC
Confidence 4567788888888543 4678899999999999986
No 91
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=53.87 E-value=12 Score=34.16 Aligned_cols=21 Identities=14% Similarity=0.463 Sum_probs=18.6
Q ss_pred EEEcCCCCeeecCCEEEEEEe
Q 029418 164 EWSLKDGDHVHKGLQFGKVSG 184 (193)
Q Consensus 164 e~~v~DGd~V~kGdvIleV~G 184 (193)
+.++++|++|+|||+++++.-
T Consensus 78 ~v~v~~Gd~VkkGqvLa~ld~ 98 (397)
T PRK15030 78 KRNFKEGSDIEAGVSLYQIDP 98 (397)
T ss_pred EEEcCCCCEecCCCEEEEECC
Confidence 468999999999999999964
No 92
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=53.37 E-value=12 Score=34.54 Aligned_cols=22 Identities=14% Similarity=0.410 Sum_probs=19.4
Q ss_pred EEEcCCCCeeecCCEEEEEEeC
Q 029418 164 EWSLKDGDHVHKGLQFGKVSGK 185 (193)
Q Consensus 164 e~~v~DGd~V~kGdvIleV~G~ 185 (193)
++++++|+.|+|||+++++.-+
T Consensus 100 ~i~v~eG~~VkkGq~La~ld~~ 121 (415)
T PRK11556 100 ALHFQEGQQVKAGDLLAEIDPR 121 (415)
T ss_pred EEECCCCCEecCCCEEEEECcH
Confidence 5689999999999999999654
No 93
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=51.45 E-value=59 Score=29.63 Aligned_cols=77 Identities=18% Similarity=0.183 Sum_probs=52.5
Q ss_pred CCChhhHHHHHHHHHhhhcCCCCCccCccccCCCcEEEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeec
Q 029418 96 SHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHK 175 (193)
Q Consensus 96 ~~p~~~L~~~I~~aL~EDig~~GDlTT~ali~~d~~akA~IiAKEdGVlAGl~va~~IF~~ldp~leve~~v~DGd~V~k 175 (193)
.++.++--..|.+++. ||--. +.+-.+++..++|..+|++.==...-.-++.++ .+. -....++..|++
T Consensus 52 ~vhEd~Aa~~la~~~~------g~~~~---~~~~~~Grvnl~A~~~Gll~vd~~~l~~~N~~~-~i~-~at~~~~~~v~~ 120 (312)
T cd03522 52 DVHEDEAAARLAAALA------GDGLR---LSEPAEGRVNLFAERAGLLKVDVEALDALNAID-AIT-LATLHNNTPVEA 120 (312)
T ss_pred ccCHHHHHHHHHHHhc------CCCce---ECCCccceEEEEECCCeeEEEcHHHHHhhhCCC-CEE-EEEcCCCeEeCC
Confidence 4555444455555553 33111 223457999999999999986555666677777 343 356899999999
Q ss_pred CCEEEEEE
Q 029418 176 GLQFGKVS 183 (193)
Q Consensus 176 GdvIleV~ 183 (193)
|+.|+.++
T Consensus 121 g~~vA~~r 128 (312)
T cd03522 121 GQMVATVK 128 (312)
T ss_pred CCEEEEEE
Confidence 99999875
No 94
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=50.43 E-value=21 Score=24.80 Aligned_cols=19 Identities=21% Similarity=0.298 Sum_probs=16.9
Q ss_pred EEEcCCCCeeecCCEEEEE
Q 029418 164 EWSLKDGDHVHKGLQFGKV 182 (193)
Q Consensus 164 e~~v~DGd~V~kGdvIleV 182 (193)
+.++++|+.|+.|+.++++
T Consensus 52 ~i~v~~G~~V~~G~~l~~i 70 (71)
T PRK05889 52 KVSVSVGDVIQAGDLIAVI 70 (71)
T ss_pred EEEeCCCCEECCCCEEEEE
Confidence 4668999999999999987
No 95
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=50.04 E-value=5.9 Score=38.19 Aligned_cols=72 Identities=19% Similarity=0.247 Sum_probs=45.6
Q ss_pred CcCCCCCChhhHHHHHHHHHhhhcCCCCCccCc---cccCCCcEEEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEc
Q 029418 91 AIKLPSHPTYDLKGVVKLALAEDAGDRGDVTCM---ATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSL 167 (193)
Q Consensus 91 ~~~~p~~p~~~L~~~I~~aL~EDig~~GDlTT~---ali~~d~~akA~IiAKEdGVlAGl~va~~IF~~ldp~leve~~v 167 (193)
.+++|.+....-+-.|..|+.+. ||--.. .+.....+....|-|..+|++ .++++
T Consensus 93 ~i~mP~lg~~~~eG~I~~w~v~~----GD~V~~Gq~L~~VEtdK~~~eI~Ap~~G~v------------------~~ilv 150 (463)
T PLN02226 93 EAVVPHMGESITDGTLATFLKKP----GERVQADEAIAQIETDKVTIDIASPASGVI------------------QEFLV 150 (463)
T ss_pred EEecCCCCCCcceEEEEEEEeCC----CCEecCCCEEEEEEecceeeEEecCCCeEE------------------EEEEe
Confidence 66777777655555555555442 222111 112334456677777777754 36789
Q ss_pred CCCCeeecCCEEEEEEe
Q 029418 168 KDGDHVHKGLQFGKVSG 184 (193)
Q Consensus 168 ~DGd~V~kGdvIleV~G 184 (193)
++||.|+.|+.|++++.
T Consensus 151 ~eGd~V~vG~~L~~I~~ 167 (463)
T PLN02226 151 KEGDTVEPGTKVAIISK 167 (463)
T ss_pred CCCCEecCCCEEEEecc
Confidence 99999999999999964
No 96
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=49.09 E-value=29 Score=21.90 Aligned_cols=22 Identities=41% Similarity=0.761 Sum_probs=18.5
Q ss_pred EEEEcCCCCeeecCCEEEEEEe
Q 029418 163 VEWSLKDGDHVHKGLQFGKVSG 184 (193)
Q Consensus 163 ve~~v~DGd~V~kGdvIleV~G 184 (193)
..|++.+|+.+.+|+.++.++-
T Consensus 18 ~~~~~~~g~~v~~~~~l~~~~~ 39 (74)
T cd06849 18 VEWLVKEGDSVEEGDVLAEVET 39 (74)
T ss_pred EEEEECCCCEEcCCCEEEEEEe
Confidence 4678899999999999988753
No 97
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=48.59 E-value=19 Score=35.70 Aligned_cols=24 Identities=17% Similarity=0.239 Sum_probs=21.2
Q ss_pred EEEEEcCCCCeeecCCEEEEEEeC
Q 029418 162 KVEWSLKDGDHVHKGLQFGKVSGK 185 (193)
Q Consensus 162 eve~~v~DGd~V~kGdvIleV~G~ 185 (193)
-++|+++.||.|++||.+++++..
T Consensus 536 V~~~~V~~Gd~V~~Gq~L~~iEam 559 (596)
T PRK14042 536 IIAIHVSAGDEVKAGQAVLVIEAM 559 (596)
T ss_pred EEEEEeCCCCEeCCCCEEEEEEec
Confidence 468999999999999999998754
No 98
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=45.38 E-value=19 Score=33.27 Aligned_cols=21 Identities=29% Similarity=0.284 Sum_probs=18.5
Q ss_pred EE-cCCCCeeecCCEEEEEEeC
Q 029418 165 WS-LKDGDHVHKGLQFGKVSGK 185 (193)
Q Consensus 165 ~~-v~DGd~V~kGdvIleV~G~ 185 (193)
.+ +..||+|+|||+++++.-+
T Consensus 137 l~~~~~Gd~VkkGq~La~l~sp 158 (409)
T PRK09783 137 VYPLTVGDKVQKGTPLLDLTIP 158 (409)
T ss_pred EEecCCCCEECCCCEEEEEeCH
Confidence 44 8999999999999999854
No 99
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=45.07 E-value=22 Score=35.18 Aligned_cols=24 Identities=13% Similarity=0.115 Sum_probs=21.1
Q ss_pred EEEEEcCCCCeeecCCEEEEEEeC
Q 029418 162 KVEWSLKDGDHVHKGLQFGKVSGK 185 (193)
Q Consensus 162 eve~~v~DGd~V~kGdvIleV~G~ 185 (193)
-++|++++||.|++||.+++++..
T Consensus 535 I~~~~V~~Gd~V~~Gd~l~~iEam 558 (593)
T PRK14040 535 IFKVIVTEGQTVAEGDVLLILEAM 558 (593)
T ss_pred EEEEEeCCCCEeCCCCEEEEEecC
Confidence 458999999999999999998753
No 100
>PRK06748 hypothetical protein; Validated
Probab=43.42 E-value=30 Score=25.88 Aligned_cols=34 Identities=12% Similarity=0.138 Sum_probs=26.4
Q ss_pred EEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeecCCEEEEEE
Q 029418 132 VEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVS 183 (193)
Q Consensus 132 akA~IiAKEdGVlAGl~va~~IF~~ldp~leve~~v~DGd~V~kGdvIleV~ 183 (193)
+...+.|..+|++. ++++++||.|+.|+.|+++.
T Consensus 41 ~~~ei~Ap~~G~v~------------------~i~v~~Gd~V~vG~~la~I~ 74 (83)
T PRK06748 41 QKVEIKVGISGYIE------------------SLEVVEGQAIADQKLLITVR 74 (83)
T ss_pred ceEEEecCCCEEEE------------------EEEeCCCCEECCCCEEEEEE
Confidence 44467777777653 45679999999999999995
No 101
>PF01551 Peptidase_M23: Peptidase family M23; InterPro: IPR016047 Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins such as Swiss:P33648 for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.; PDB: 3IT5_A 3IT7_B 2GU1_A 3NYY_A 2HSI_B 3SLU_B 3UZ0_D 3TUF_B 1QWY_A 2B44_B ....
Probab=42.17 E-value=25 Score=25.30 Aligned_cols=20 Identities=40% Similarity=0.589 Sum_probs=15.3
Q ss_pred EcCCCCeeecCCEEEEEEeC
Q 029418 166 SLKDGDHVHKGLQFGKVSGK 185 (193)
Q Consensus 166 ~v~DGd~V~kGdvIleV~G~ 185 (193)
.++.|++|++|++|+.+-..
T Consensus 56 ~v~~G~~V~~G~~IG~~g~~ 75 (96)
T PF01551_consen 56 SVKVGDRVKAGQVIGTVGNT 75 (96)
T ss_dssp SS-TTSEE-TTCEEEEEBSC
T ss_pred cceecccccCCCEEEecCCC
Confidence 47899999999999998743
No 102
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=41.07 E-value=26 Score=37.37 Aligned_cols=24 Identities=17% Similarity=0.120 Sum_probs=20.8
Q ss_pred EEEEEcCCCCeeecCCEEEEEEeC
Q 029418 162 KVEWSLKDGDHVHKGLQFGKVSGK 185 (193)
Q Consensus 162 eve~~v~DGd~V~kGdvIleV~G~ 185 (193)
-++|++++||.|++||.|++++-.
T Consensus 1143 v~~~~v~~Gd~V~~Gd~l~~iEsm 1166 (1201)
T TIGR02712 1143 FWKVLVEVGDRVEAGQPLVILEAM 1166 (1201)
T ss_pred EEEEEeCCCCEECCCCEEEEEEec
Confidence 358999999999999999998653
No 103
>PRK01202 glycine cleavage system protein H; Provisional
Probab=40.82 E-value=58 Score=25.71 Aligned_cols=40 Identities=23% Similarity=0.235 Sum_probs=28.6
Q ss_pred EEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeecCCEEEEEEeC
Q 029418 143 IIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGK 185 (193)
Q Consensus 143 VlAGl~va~~IF~~ldp~leve~~v~DGd~V~kGdvIleV~G~ 185 (193)
+.-|+.-.. .+.+|. +..--+.+-|++|++|+.+++|++.
T Consensus 24 ~~vGit~~a--~~~lG~-i~~v~lp~~G~~v~~g~~~~~IEs~ 63 (127)
T PRK01202 24 ATVGITDHA--QEQLGD-IVFVELPEVGDEVKAGETFGVVESV 63 (127)
T ss_pred EEEeeCHHH--HhhcCC-eeEEEcCCCCCEecCCCEEEEEEEc
Confidence 557765544 556764 4444455789999999999999874
No 104
>COG1488 PncB Nicotinic acid phosphoribosyltransferase [Coenzyme metabolism]
Probab=40.41 E-value=31 Score=32.53 Aligned_cols=84 Identities=14% Similarity=0.212 Sum_probs=56.2
Q ss_pred HHHHHHHHhhhcCCCCCccCcccc----CCCcEEEEEEEeeCC------eEEEcHHHHHHHHHHcCC-------------
Q 029418 103 KGVVKLALAEDAGDRGDVTCMATI----PLDMEVEAHFLAKED------GIIAGIALAEMIFHEVDP------------- 159 (193)
Q Consensus 103 ~~~I~~aL~EDig~~GDlTT~ali----~~d~~akA~IiAKEd------GVlAGl~va~~IF~~ldp------------- 159 (193)
+..+++.|.=|... +|....+ +.+..+...+..|.+ .++||++.+-..++.+.=
T Consensus 8 ~~~i~~~L~TD~Yk---ltm~q~~~~~~~~~~~v~~e~~~R~~p~~~~~~~~~gl~~~l~~l~~l~fs~ee~~~L~~~~~ 84 (405)
T COG1488 8 EPDIKSLLDTDLYK---LTMLQAYLHDGPNNVTVVFEFFFRKLPFLGGYAVFAGLEEVLELLENLRFSEEEIAYLRSLPF 84 (405)
T ss_pred hHHHhhhhHhHHHH---HHHHHHHHhhCCCccEEEEEEEecCCcccchHHHHHHHHHHHHHHhhcCCCHHHHHHHhhccc
Confidence 44555555555532 3332222 223567888888886 788999988888877310
Q ss_pred ----------CcEEEE-EcCCCCeeecCCEEEEEEeChhhh
Q 029418 160 ----------SLKVEW-SLKDGDHVHKGLQFGKVSGKPRKI 189 (193)
Q Consensus 160 ----------~leve~-~v~DGd~V~kGdvIleV~G~ArsL 189 (193)
.++++. .+++|+.+.+++.+++++|+...-
T Consensus 85 ~~~~fl~~L~~f~~~i~a~~eg~~~~~~ep~l~i~G~~~e~ 125 (405)
T COG1488 85 FKPDFLNYLRRFPLDIYAVPEGTVVFPNEPVLRIEGPYLET 125 (405)
T ss_pred ccHHHHHHHhhCCCceEEEeccccccCCCceEEEEecHHHH
Confidence 133444 688999999999999999998653
No 105
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=39.96 E-value=26 Score=34.67 Aligned_cols=22 Identities=32% Similarity=0.356 Sum_probs=19.4
Q ss_pred EEEEEcCCCCeeecCCEEEEEE
Q 029418 162 KVEWSLKDGDHVHKGLQFGKVS 183 (193)
Q Consensus 162 eve~~v~DGd~V~kGdvIleV~ 183 (193)
-++.++++||+|++||.++++.
T Consensus 545 gF~~~v~~g~~V~~G~~l~~~d 566 (610)
T TIGR01995 545 GFEILVKVGDHVKAGQLLLTFD 566 (610)
T ss_pred CeEEEecCcCEEcCCCEEEEec
Confidence 4678899999999999999874
No 106
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=38.11 E-value=32 Score=32.06 Aligned_cols=23 Identities=26% Similarity=0.270 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCeeecCCEEEEEE
Q 029418 161 LKVEWSLKDGDHVHKGLQFGKVS 183 (193)
Q Consensus 161 leve~~v~DGd~V~kGdvIleV~ 183 (193)
.-.++.++|.+.|++||++++|-
T Consensus 63 ~V~eV~V~dnq~Vk~Gd~L~~iD 85 (352)
T COG1566 63 RVTEVNVKDNQLVKKGDVLFRID 85 (352)
T ss_pred EEEEEEecCCCEecCCCeEEEEC
Confidence 34678999999999999999985
No 107
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=37.71 E-value=28 Score=34.96 Aligned_cols=21 Identities=14% Similarity=0.292 Sum_probs=18.1
Q ss_pred EEEEcCCCCeeecCCEEEEEE
Q 029418 163 VEWSLKDGDHVHKGLQFGKVS 183 (193)
Q Consensus 163 ve~~v~DGd~V~kGdvIleV~ 183 (193)
++.++++||+|++||.++++.
T Consensus 582 F~~~Vk~Gd~V~~G~~l~~~D 602 (648)
T PRK10255 582 FKRLVEEGAQVSAGQPILEMD 602 (648)
T ss_pred ceEEecCCCEEcCCCEEEEEc
Confidence 466789999999999999874
No 108
>TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial. The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown.
Probab=37.02 E-value=79 Score=24.66 Aligned_cols=41 Identities=7% Similarity=-0.039 Sum_probs=27.7
Q ss_pred eEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeecCCEEEEEEeC
Q 029418 142 GIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGK 185 (193)
Q Consensus 142 GVlAGl~va~~IF~~ldp~leve~~v~DGd~V~kGdvIleV~G~ 185 (193)
.+--|+.-.. -+.+|. +.+--+.+.|+.|++|+.+++|+..
T Consensus 16 ~~~vGiT~~a--q~~lG~-i~~v~lp~~G~~V~~g~~i~~IEs~ 56 (110)
T TIGR03077 16 VVRLGLTSRM--QENLGN-ILHIDLPSVGSSCKEGEVLVILESS 56 (110)
T ss_pred EEEEeeCHHH--HHhcCC-EEEEECCCCCCEEcCCCEEEEEEec
Confidence 3456654333 345653 5554556779999999999999864
No 109
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=36.98 E-value=29 Score=34.66 Aligned_cols=22 Identities=18% Similarity=0.146 Sum_probs=19.4
Q ss_pred EEEEEcCCCCeeecCCEEEEEE
Q 029418 162 KVEWSLKDGDHVHKGLQFGKVS 183 (193)
Q Consensus 162 eve~~v~DGd~V~kGdvIleV~ 183 (193)
-++.++++||+|++||.++++.
T Consensus 561 gF~~~v~~Gd~V~~G~~l~~~D 582 (627)
T PRK09824 561 FFTAHVNVGDKVNTGDLLIEFD 582 (627)
T ss_pred CceEEecCCCEEcCCCEEEEEc
Confidence 4678899999999999999874
No 110
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=35.93 E-value=37 Score=27.76 Aligned_cols=22 Identities=23% Similarity=0.284 Sum_probs=19.2
Q ss_pred EEEEEcCCCCeeecCCEEEEEE
Q 029418 162 KVEWSLKDGDHVHKGLQFGKVS 183 (193)
Q Consensus 162 eve~~v~DGd~V~kGdvIleV~ 183 (193)
-.+++++||+.|..|+.+++++
T Consensus 135 v~~i~v~~g~~V~~Gq~L~~i~ 156 (156)
T TIGR00531 135 VVEILVENGQPVEYGQPLIVIE 156 (156)
T ss_pred EEEEEeCCCCEECCCCEEEEEC
Confidence 3468999999999999999874
No 111
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=35.01 E-value=44 Score=29.40 Aligned_cols=22 Identities=36% Similarity=0.391 Sum_probs=18.5
Q ss_pred EEEEcCCCCeeecCCEEEEEEe
Q 029418 163 VEWSLKDGDHVHKGLQFGKVSG 184 (193)
Q Consensus 163 ve~~v~DGd~V~kGdvIleV~G 184 (193)
++..++-|++|++||+|+++.=
T Consensus 234 ~~~~~~~G~~V~~G~~lg~i~d 255 (288)
T cd06254 234 WYPFVKAGDTVQKGALLGYVTD 255 (288)
T ss_pred EEEecCCCCEecCCCEEEEEEC
Confidence 4566788999999999999953
No 112
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=34.98 E-value=39 Score=27.55 Aligned_cols=22 Identities=18% Similarity=0.203 Sum_probs=19.2
Q ss_pred EEEEEcCCCCeeecCCEEEEEE
Q 029418 162 KVEWSLKDGDHVHKGLQFGKVS 183 (193)
Q Consensus 162 eve~~v~DGd~V~kGdvIleV~ 183 (193)
-.+++++||+.|..|+.+++++
T Consensus 134 i~~i~v~~g~~V~~Gq~L~~i~ 155 (155)
T PRK06302 134 VTEILVENGQPVEFGQPLFVIE 155 (155)
T ss_pred EEEEEcCCCCEeCCCCEEEEeC
Confidence 3578999999999999999874
No 113
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=33.50 E-value=46 Score=35.53 Aligned_cols=23 Identities=22% Similarity=0.305 Sum_probs=21.0
Q ss_pred EEEEEcCCCCeeecCCEEEEEEe
Q 029418 162 KVEWSLKDGDHVHKGLQFGKVSG 184 (193)
Q Consensus 162 eve~~v~DGd~V~kGdvIleV~G 184 (193)
-++|++++||.|++||.+++++-
T Consensus 1085 v~~~~v~~Gd~V~~Gd~L~~iEa 1107 (1143)
T TIGR01235 1085 IIEVKVSSGQAVNKGDPLVVLEA 1107 (1143)
T ss_pred EEEEEeCCCCEeCCCCEEEEEEe
Confidence 46899999999999999999875
No 114
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=32.83 E-value=44 Score=32.98 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=19.6
Q ss_pred EEEEcCCCCeeecCCEEEEEEe
Q 029418 163 VEWSLKDGDHVHKGLQFGKVSG 184 (193)
Q Consensus 163 ve~~v~DGd~V~kGdvIleV~G 184 (193)
.++.+++|+.|++||.+++++-
T Consensus 534 ~~~~V~~Gd~V~~Gq~L~~iea 555 (592)
T PRK09282 534 VKVKVKEGDKVKAGDTVLVLEA 555 (592)
T ss_pred EEEEeCCCCEECCCCEEEEEec
Confidence 5789999999999999999864
No 115
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=31.96 E-value=34 Score=32.87 Aligned_cols=71 Identities=25% Similarity=0.337 Sum_probs=46.0
Q ss_pred CcCCCCCChhhHHHHHHHHHhhhcCCCCCccCc----cccCCCcEEEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEE
Q 029418 91 AIKLPSHPTYDLKGVVKLALAEDAGDRGDVTCM----ATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWS 166 (193)
Q Consensus 91 ~~~~p~~p~~~L~~~I~~aL~EDig~~GDlTT~----ali~~d~~akA~IiAKEdGVlAGl~va~~IF~~ldp~leve~~ 166 (193)
+++-|......-+-.|+.|+..= ||.-.+ +.| +..+.+..+-+...|++- +++
T Consensus 74 tv~vP~faESiteG~l~~~lK~~----Gd~v~~DE~va~I-ETDK~tv~V~sP~sGvi~------------------e~l 130 (457)
T KOG0559|consen 74 TVEVPPFAESITEGDLAQWLKKV----GDRVNEDEAVAEI-ETDKTTVEVPSPASGVIT------------------ELL 130 (457)
T ss_pred EEecCCcccccccchHHHHhhCc----ccccccchhheee-eccceeeeccCCCcceee------------------EEe
Confidence 35666666666667777777641 332211 112 223456677777777653 348
Q ss_pred cCCCCeeecCCEEEEEEe
Q 029418 167 LKDGDHVHKGLQFGKVSG 184 (193)
Q Consensus 167 v~DGd~V~kGdvIleV~G 184 (193)
++|||+|++|+.++.++-
T Consensus 131 vk~gdtV~~g~~la~i~~ 148 (457)
T KOG0559|consen 131 VKDGDTVTPGQKLAKISP 148 (457)
T ss_pred cCCCCcccCCceeEEecC
Confidence 999999999999999964
No 116
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=31.83 E-value=94 Score=30.78 Aligned_cols=40 Identities=18% Similarity=0.226 Sum_probs=33.5
Q ss_pred CCcEEEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeecCCEEEEEEeC
Q 029418 128 LDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGK 185 (193)
Q Consensus 128 ~d~~akA~IiAKEdGVlAGl~va~~IF~~ldp~leve~~v~DGd~V~kGdvIleV~G~ 185 (193)
...+.+..+.|..+|++. ++++++|+.|+.|+.|++++..
T Consensus 38 Et~K~~~~v~a~~~G~v~------------------~i~~~~g~~V~~G~~l~~i~~~ 77 (633)
T PRK11854 38 EGDKASMEVPSPQAGVVK------------------EIKVKVGDKVETGALIMIFESA 77 (633)
T ss_pred EeCCeeEEEeCCCCEEEE------------------EEEeCCCCEEeCCCEEEEEecc
Confidence 344677888888999887 5778999999999999999875
No 117
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=31.80 E-value=53 Score=29.11 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=20.5
Q ss_pred EEEEcCCCCeeecCCEEEEEEeChh
Q 029418 163 VEWSLKDGDHVHKGLQFGKVSGKPR 187 (193)
Q Consensus 163 ve~~v~DGd~V~kGdvIleV~G~Ar 187 (193)
++..++=|++|+|||.|++|.-+..
T Consensus 242 ~~~~~~~G~~V~~Gq~lg~I~dp~g 266 (293)
T cd06255 242 FEPSVPAGDTIPAGQPLGRVVDLYG 266 (293)
T ss_pred EEEecCCCCEecCCCEEEEEECCCC
Confidence 4566888999999999999976543
No 118
>PRK00624 glycine cleavage system protein H; Provisional
Probab=31.36 E-value=1.1e+02 Score=23.98 Aligned_cols=41 Identities=7% Similarity=-0.046 Sum_probs=28.2
Q ss_pred eEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeecCCEEEEEEeC
Q 029418 142 GIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGK 185 (193)
Q Consensus 142 GVlAGl~va~~IF~~ldp~leve~~v~DGd~V~kGdvIleV~G~ 185 (193)
.+.-|+.-.. -+.+|. +.+--+.+.|++|++|+.+++|+..
T Consensus 18 ~~~vGiT~~a--~~~lG~-i~~v~lp~~G~~V~~g~~i~~IEs~ 58 (114)
T PRK00624 18 IVRLGLTSKM--QENLGN-ILHIDLPSVGSFCKEGEVLVILESS 58 (114)
T ss_pred EEEEeeCHHH--HHhcCC-EEEEECCCCCCEEeCCCEEEEEEec
Confidence 3556764433 345553 5555556789999999999999864
No 119
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=30.62 E-value=57 Score=28.70 Aligned_cols=23 Identities=26% Similarity=0.392 Sum_probs=19.4
Q ss_pred EEEEcCCCCeeecCCEEEEEEeC
Q 029418 163 VEWSLKDGDHVHKGLQFGKVSGK 185 (193)
Q Consensus 163 ve~~v~DGd~V~kGdvIleV~G~ 185 (193)
++..++=||+|+|||+|+++.-+
T Consensus 230 ~~~~~~~Gd~V~~G~~ig~i~d~ 252 (287)
T cd06251 230 LRSLVKLGDKVKKGQLLATITDP 252 (287)
T ss_pred EEEecCCCCEECCCCEEEEEECC
Confidence 45678889999999999999754
No 120
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=30.30 E-value=50 Score=29.74 Aligned_cols=23 Identities=30% Similarity=0.238 Sum_probs=19.5
Q ss_pred EEEEEcCCCCeeecCCEEEEEEe
Q 029418 162 KVEWSLKDGDHVHKGLQFGKVSG 184 (193)
Q Consensus 162 eve~~v~DGd~V~kGdvIleV~G 184 (193)
-++..++-||.|+|||+|+.+.+
T Consensus 174 i~~~~~~IGd~V~KGqvLa~I~~ 196 (256)
T TIGR03309 174 IVTPTKAIGDSVKKGDVIATVGD 196 (256)
T ss_pred EEeeccCCCCEEeCCCEEEEEcC
Confidence 45567889999999999999976
No 121
>PF01597 GCV_H: Glycine cleavage H-protein; InterPro: IPR002930 This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein [].; GO: 0006546 glycine catabolic process, 0005960 glycine cleavage complex; PDB: 3KLR_A 2EDG_A 1ONL_B 2KA7_A 1ZKO_A 3TZU_C 3MXU_A 3A8I_F 3A8J_E 3A7A_B ....
Probab=29.98 E-value=1.1e+02 Score=23.80 Aligned_cols=39 Identities=21% Similarity=0.186 Sum_probs=23.2
Q ss_pred EEcHHHHHHHHHHcCCCcEEEEEcCCCCeeecCCEEEEEEeC
Q 029418 144 IAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGK 185 (193)
Q Consensus 144 lAGl~va~~IF~~ldp~leve~~v~DGd~V~kGdvIleV~G~ 185 (193)
.=|+.-.. .+.+|. +..--+.+.|+++++|+.++.|++.
T Consensus 19 ~vGit~~a--~~~lG~-i~~v~lp~~g~~~~~g~~~~~ies~ 57 (122)
T PF01597_consen 19 RVGITDFA--QDELGD-IVYVELPKVGTKLKKGDPFASIESS 57 (122)
T ss_dssp EEEE-HHH--HHHH-S-EEEEE-B-TT-EE-TTSEEEEEEES
T ss_pred EEEECchH--hhcCCc-eEEEEEccCCCEEecCCcEEEEEEC
Confidence 35654443 456664 5444567889999999999999974
No 122
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=28.28 E-value=65 Score=26.48 Aligned_cols=20 Identities=25% Similarity=0.393 Sum_probs=17.4
Q ss_pred EEEEcCCCCeeecCCEEEEE
Q 029418 163 VEWSLKDGDHVHKGLQFGKV 182 (193)
Q Consensus 163 ve~~v~DGd~V~kGdvIleV 182 (193)
.++++++|+.|+.|+.++++
T Consensus 133 ~~i~v~~Gd~V~~Gq~L~~I 152 (153)
T PRK05641 133 KKILVKEGDTVDTGQPLIEL 152 (153)
T ss_pred EEEEcCCCCEECCCCEEEEe
Confidence 35678999999999999986
No 123
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=27.99 E-value=35 Score=32.69 Aligned_cols=26 Identities=19% Similarity=0.394 Sum_probs=22.8
Q ss_pred cEEEEEcCCCCeeecCCEEEEEEeCh
Q 029418 161 LKVEWSLKDGDHVHKGLQFGKVSGKP 186 (193)
Q Consensus 161 leve~~v~DGd~V~kGdvIleV~G~A 186 (193)
...+..++.||+|++||.|++-+|..
T Consensus 39 ~~~k~~Vk~GD~V~~Gq~I~~~~~~~ 64 (447)
T TIGR01936 39 MRPKMKVRPGDKVKAGQPLFEDKKNP 64 (447)
T ss_pred CCCceEeCcCCEEcCCCEeEecCCCc
Confidence 56789999999999999999987754
No 124
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=27.78 E-value=63 Score=26.00 Aligned_cols=19 Identities=16% Similarity=0.195 Sum_probs=17.4
Q ss_pred EEEcCCCCeeecCCEEEEE
Q 029418 164 EWSLKDGDHVHKGLQFGKV 182 (193)
Q Consensus 164 e~~v~DGd~V~kGdvIleV 182 (193)
++++++||.|+.|+.++++
T Consensus 111 ~i~v~~Gd~V~~G~~L~~I 129 (130)
T PRK06549 111 AIHVTPGQVVNPGDGLITI 129 (130)
T ss_pred EEEeCCCCEeCCCCEEEEe
Confidence 5789999999999999987
No 125
>PRK10871 nlpD lipoprotein NlpD; Provisional
Probab=27.12 E-value=42 Score=30.95 Aligned_cols=19 Identities=11% Similarity=0.319 Sum_probs=16.5
Q ss_pred EEcCCCCeeecCCEEEEEE
Q 029418 165 WSLKDGDHVHKGLQFGKVS 183 (193)
Q Consensus 165 ~~v~DGd~V~kGdvIleV~ 183 (193)
..+++||.|++||+|+++-
T Consensus 272 i~Vk~Gq~V~~Gq~Ig~~G 290 (319)
T PRK10871 272 MLVREQQEVKAGQKIATMG 290 (319)
T ss_pred cccCCcCEECCCCeEEeEc
Confidence 3588999999999999874
No 126
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=26.92 E-value=65 Score=28.74 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=18.7
Q ss_pred EEEEcCCCCeeecCCEEEEEEeC
Q 029418 163 VEWSLKDGDHVHKGLQFGKVSGK 185 (193)
Q Consensus 163 ve~~v~DGd~V~kGdvIleV~G~ 185 (193)
++..++=|+.|+|||+|++|.=+
T Consensus 240 ~~~~~~~G~~V~~Gq~lg~i~dp 262 (298)
T cd06253 240 FVPAKHLGDIVKRGDVIGEIVDP 262 (298)
T ss_pred EEECcCCCCEECCCCEEEEEeCC
Confidence 34557789999999999999754
No 127
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=26.49 E-value=74 Score=28.47 Aligned_cols=24 Identities=25% Similarity=0.231 Sum_probs=19.2
Q ss_pred EEEEcCCCCeeecCCEEEEEEeCh
Q 029418 163 VEWSLKDGDHVHKGLQFGKVSGKP 186 (193)
Q Consensus 163 ve~~v~DGd~V~kGdvIleV~G~A 186 (193)
++..++=|+.|+|||+|++|.-+.
T Consensus 255 ~~~~~~~G~~V~~G~~lg~i~d~~ 278 (316)
T cd06252 255 FEPLVDLGDEVSAGQVAGRIHFPE 278 (316)
T ss_pred EEEecCCCCEEcCCCEEEEEECCC
Confidence 345577899999999999997653
No 128
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=26.10 E-value=96 Score=26.33 Aligned_cols=38 Identities=18% Similarity=0.159 Sum_probs=29.0
Q ss_pred EEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeecCCEEEEEEeChh
Q 029418 132 VEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGKPR 187 (193)
Q Consensus 132 akA~IiAKEdGVlAGl~va~~IF~~ldp~leve~~v~DGd~V~kGdvIleV~G~Ar 187 (193)
....+.|..+|++. ...+..|+.+.+|+.++++..+.+
T Consensus 133 ~~~~i~AP~~G~V~------------------~~~~~~G~~v~~g~~l~~i~~~~~ 170 (322)
T TIGR01730 133 RYTEIRAPFDGTIG------------------RRLVEVGAYVTAGQTLATIVDLDP 170 (322)
T ss_pred ccCEEECCCCcEEE------------------EEEcCCCceeCCCCcEEEEEcCCc
Confidence 35678888888883 345678999999999999876543
No 129
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=25.93 E-value=74 Score=28.94 Aligned_cols=21 Identities=33% Similarity=0.428 Sum_probs=18.1
Q ss_pred EEEcCCCCeeecCCEEEEEEe
Q 029418 164 EWSLKDGDHVHKGLQFGKVSG 184 (193)
Q Consensus 164 e~~v~DGd~V~kGdvIleV~G 184 (193)
+..++=|++|+|||+|++|.=
T Consensus 267 ~~~v~~G~~V~~G~~lg~I~d 287 (325)
T TIGR02994 267 EFMIDLGDPVSKGDVIARVYP 287 (325)
T ss_pred EEecCCCCEeCCCCEEEEEEC
Confidence 456788999999999999964
No 130
>PRK13380 glycine cleavage system protein H; Provisional
Probab=24.40 E-value=1.3e+02 Score=24.48 Aligned_cols=47 Identities=21% Similarity=0.234 Sum_probs=30.9
Q ss_pred EEeeC-Ce-EEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeecCCEEEEEEeC
Q 029418 136 FLAKE-DG-IIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGK 185 (193)
Q Consensus 136 IiAKE-dG-VlAGl~va~~IF~~ldp~leve~~v~DGd~V~kGdvIleV~G~ 185 (193)
++..+ +| +.-|+.-.. -+.+|. +..-.+.+.|++|++|+.+++|+..
T Consensus 22 Wv~~~~~g~~~vGitd~a--q~~lG~-I~~v~lp~~G~~V~~Gd~~~~IEs~ 70 (144)
T PRK13380 22 WLRLEGDGTVTVGITDYA--QTMAGD-VVFVRLKELGKKVEKGKPVATLESG 70 (144)
T ss_pred EEEEcCCCEEEEecCHHH--HHhcCC-EEEEEcCCCCCEeeCCCeEEEEEEc
Confidence 44444 44 567865544 345653 4444455689999999999999853
No 131
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding
Probab=24.24 E-value=84 Score=28.93 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=18.6
Q ss_pred EEEEcCCCCeeecCCEEEEEEeC
Q 029418 163 VEWSLKDGDHVHKGLQFGKVSGK 185 (193)
Q Consensus 163 ve~~v~DGd~V~kGdvIleV~G~ 185 (193)
++..++=|+.|++||+|++|.=+
T Consensus 300 ~~~~~~~Gd~V~~G~~lg~I~d~ 322 (359)
T cd06250 300 VVYRAAPGDWVEAGDVLAEILDP 322 (359)
T ss_pred EEEecCCCCEecCCCEEEEEECC
Confidence 34567789999999999999643
No 132
>PF13437 HlyD_3: HlyD family secretion protein
Probab=24.13 E-value=1.1e+02 Score=22.03 Aligned_cols=21 Identities=14% Similarity=0.360 Sum_probs=17.8
Q ss_pred EEcCCCCeeecCCEEEEEEeC
Q 029418 165 WSLKDGDHVHKGLQFGKVSGK 185 (193)
Q Consensus 165 ~~v~DGd~V~kGdvIleV~G~ 185 (193)
+.+..|+.|.+|+.++++...
T Consensus 13 ~~~~~G~~v~~g~~l~~i~~~ 33 (105)
T PF13437_consen 13 INVQPGEVVSAGQPLAEIVDT 33 (105)
T ss_pred EeCCCCCEECCCCEEEEEEcc
Confidence 345789999999999999875
No 133
>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function. ; PDB: 3D4R_D.
Probab=23.81 E-value=83 Score=26.17 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=18.2
Q ss_pred cEEEEEcCCCCeeecCCEEEEEEe
Q 029418 161 LKVEWSLKDGDHVHKGLQFGKVSG 184 (193)
Q Consensus 161 leve~~v~DGd~V~kGdvIleV~G 184 (193)
.++...+..|++|.+||.++.+.=
T Consensus 90 ~~v~~i~~~G~rV~~gd~lA~v~T 113 (150)
T PF09891_consen 90 YQVYPIVDEGDRVRKGDRLAYVTT 113 (150)
T ss_dssp SEEEESS-TSEEE-TT-EEEEEE-
T ss_pred eEEEEEcccCcEeccCcEEEEEEe
Confidence 688899999999999999998863
No 134
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=22.37 E-value=1.3e+02 Score=26.11 Aligned_cols=36 Identities=22% Similarity=0.155 Sum_probs=27.3
Q ss_pred EEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeecCCEEEEEEeC
Q 029418 132 VEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGK 185 (193)
Q Consensus 132 akA~IiAKEdGVlAGl~va~~IF~~ldp~leve~~v~DGd~V~kGdvIleV~G~ 185 (193)
.+..|+|..+|++.- ..+..|+.|.+|+.++++.-+
T Consensus 203 ~~~~I~AP~~G~V~~------------------~~~~~G~~v~~g~~l~~i~~~ 238 (334)
T TIGR00998 203 KRTVIRAPFDGYVAR------------------RFVQVGQVVSPGQPLMAVVPA 238 (334)
T ss_pred hCcEEEcCCCcEEEE------------------EecCCCCEeCCCCeeEEEEcC
Confidence 457888888888753 246689999999999888644
No 135
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=22.09 E-value=53 Score=31.41 Aligned_cols=26 Identities=31% Similarity=0.505 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCeeecCCEEEEEEeCh
Q 029418 161 LKVEWSLKDGDHVHKGLQFGKVSGKP 186 (193)
Q Consensus 161 leve~~v~DGd~V~kGdvIleV~G~A 186 (193)
...+..++.||+|++||.|++-+|..
T Consensus 40 ~~~~~~V~~GD~V~~Gq~I~~~~~~~ 65 (448)
T PRK05352 40 LRPKMKVKEGDKVKKGQPLFEDKKNP 65 (448)
T ss_pred CCCceEeCcCCEEcCCCEeEecCCCc
Confidence 56678999999999999999887754
No 136
>PRK12999 pyruvate carboxylase; Reviewed
Probab=21.80 E-value=89 Score=33.39 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=20.3
Q ss_pred EEEEEcCCCCeeecCCEEEEEEe
Q 029418 162 KVEWSLKDGDHVHKGLQFGKVSG 184 (193)
Q Consensus 162 eve~~v~DGd~V~kGdvIleV~G 184 (193)
-+++++++||.|++||.++.++-
T Consensus 1087 v~~i~v~~Gd~V~~G~~L~~lea 1109 (1146)
T PRK12999 1087 VVTVLVKEGDEVKAGDPLAVIEA 1109 (1146)
T ss_pred EEEEEcCCCCEECCCCEEEEEEc
Confidence 35889999999999999999874
No 137
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=21.10 E-value=49 Score=31.10 Aligned_cols=25 Identities=36% Similarity=0.387 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCeeecCCEEEEEEeC
Q 029418 161 LKVEWSLKDGDHVHKGLQFGKVSGK 185 (193)
Q Consensus 161 leve~~v~DGd~V~kGdvIleV~G~ 185 (193)
...+..++.||+|++||.|++..|.
T Consensus 41 ~~~~~~V~~Gd~V~~Gq~i~~~~~~ 65 (435)
T TIGR01945 41 APAEPIVKVGDKVLKGQKIAKADGF 65 (435)
T ss_pred CCCceeeCCCCEECCCCEeccCCCc
Confidence 5677899999999999999998774
No 138
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=21.07 E-value=1.1e+02 Score=30.97 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCeeecCCEEEEEEe
Q 029418 160 SLKVEWSLKDGDHVHKGLQFGKVSG 184 (193)
Q Consensus 160 ~leve~~v~DGd~V~kGdvIleV~G 184 (193)
+.-+.+.+++|+.|.+||.++.++.
T Consensus 584 G~v~~v~V~~G~~V~~G~~lvvlEA 608 (645)
T COG4770 584 GTVVSVAVKEGQEVSAGDLLVVLEA 608 (645)
T ss_pred ceEEEEEecCCCEecCCCeEEEeEe
Confidence 3556789999999999999998874
No 139
>COG0739 NlpD Membrane proteins related to metalloendopeptidases [Cell envelope biogenesis, outer membrane]
Probab=20.76 E-value=67 Score=26.77 Aligned_cols=19 Identities=32% Similarity=0.494 Sum_probs=17.3
Q ss_pred EEEcCCCCeeecCCEEEEE
Q 029418 164 EWSLKDGDHVHKGLQFGKV 182 (193)
Q Consensus 164 e~~v~DGd~V~kGdvIleV 182 (193)
...++.|+.|++|++|+.+
T Consensus 215 ~~~V~~G~~V~~G~~Ig~~ 233 (277)
T COG0739 215 SILVKEGQKVKAGQVIGYV 233 (277)
T ss_pred hhccCCCCEeccCCEEEEe
Confidence 5678999999999999988
No 140
>PF11918 DUF3436: Domain of unknown function (DUF3436); InterPro: IPR024591 This uncharacterised N-terminal domain is associated with the interphotoreceptor retinol-binding protein family. It is about 50 amino acids in length and has two conserved sequence motifs: DPRL and SYEP.
Probab=20.56 E-value=2e+02 Score=20.32 Aligned_cols=44 Identities=11% Similarity=0.212 Sum_probs=25.3
Q ss_pred cccccceeeeeccccccCCCCCCCCcCCCCCChhhHHHHHHHHHhhh
Q 029418 67 LCTNSRQVVKMSATGIRKPGFESPAIKLPSHPTYDLKGVVKLALAED 113 (193)
Q Consensus 67 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~p~~p~~~L~~~I~~aL~ED 113 (193)
....+|++++---.-... ...+-++|.+|++.+-..|+..++-|
T Consensus 11 slnDpRL~ISYEP~~~ea---P~~~p~~~~Lt~EqLla~lq~~ik~e 54 (55)
T PF11918_consen 11 SLNDPRLVISYEPSYVEA---PQQPPALPNLTPEQLLAMLQKSIKHE 54 (55)
T ss_pred cccCCCeEEEeCCCCCCC---CCCCCCCCCcCHHHHHHHHHhheeec
Confidence 344577777652111111 12234567889988888888776654
No 141
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=20.28 E-value=82 Score=33.42 Aligned_cols=26 Identities=35% Similarity=0.551 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCCeeecCCEEEEEEe
Q 029418 159 PSLKVEWSLKDGDHVHKGLQFGKVSG 184 (193)
Q Consensus 159 p~leve~~v~DGd~V~kGdvIleV~G 184 (193)
++.-+++.++.|++|+|||.++.++.
T Consensus 1087 pG~Vv~v~V~~G~~Vk~Gd~l~~ieA 1112 (1149)
T COG1038 1087 PGVVVEVKVKKGDKVKKGDVLAVIEA 1112 (1149)
T ss_pred CCceEEEEEccCCeecCCCeeeehhh
Confidence 34578999999999999999998753
No 142
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=20.06 E-value=1.2e+02 Score=26.05 Aligned_cols=36 Identities=14% Similarity=0.234 Sum_probs=28.3
Q ss_pred cEEEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeecCCEEEEEE
Q 029418 130 MEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVS 183 (193)
Q Consensus 130 ~~akA~IiAKEdGVlAGl~va~~IF~~ldp~leve~~v~DGd~V~kGdvIleV~ 183 (193)
.+.+..|.|..+|+|. +..+++|+.|+.|+.|+++.
T Consensus 42 ~k~~~~~~a~~~g~~~------------------~~~~~~g~~v~~g~~l~~i~ 77 (371)
T PRK14875 42 DKITNEVEAPAAGTLR------------------RQVAQEGETLPVGALLAVVA 77 (371)
T ss_pred cceeEEEecCCCeEEE------------------EEEcCCCCEeCCCCEEEEEe
Confidence 3456667777777653 46788999999999999996
Done!