Query 029418
Match_columns 193
No_of_seqs 124 out of 1140
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 20:43:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029418.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029418hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l0g_A Nicotinate-nucleotide p 99.9 1E-22 3.5E-27 180.3 7.2 101 92-193 16-116 (300)
2 1x1o_A Nicotinate-nucleotide p 99.9 1.6E-22 5.4E-27 177.1 7.6 98 95-193 7-104 (286)
3 3tqv_A Nicotinate-nucleotide p 99.9 5.5E-22 1.9E-26 174.6 10.5 98 93-193 10-107 (287)
4 3paj_A Nicotinate-nucleotide p 99.8 5.7E-21 2E-25 170.3 9.2 92 100-193 44-140 (320)
5 1qpo_A Quinolinate acid phosph 99.8 4.3E-21 1.5E-25 167.9 7.7 92 100-193 8-103 (284)
6 3gnn_A Nicotinate-nucleotide p 99.8 5.2E-21 1.8E-25 169.1 8.0 92 100-193 27-118 (298)
7 1o4u_A Type II quinolic acid p 99.8 1.6E-20 5.6E-25 164.6 9.4 98 91-193 5-103 (285)
8 1qap_A Quinolinic acid phospho 99.8 1E-19 3.5E-24 159.9 8.7 92 100-193 20-117 (296)
9 2b7n_A Probable nicotinate-nuc 99.8 1.8E-19 6.1E-24 155.9 8.2 89 101-193 2-90 (273)
10 2jbm_A Nicotinate-nucleotide p 99.8 6.1E-19 2.1E-23 154.7 8.9 88 101-193 16-103 (299)
11 3c2e_A Nicotinate-nucleotide p 99.7 1.3E-18 4.3E-23 152.4 7.5 88 101-193 12-105 (294)
12 2i1o_A Nicotinate phosphoribos 98.9 3.5E-10 1.2E-14 102.8 3.5 85 103-193 15-112 (398)
13 2i14_A Nicotinate-nucleotide p 98.9 2.5E-10 8.4E-15 103.6 2.4 85 103-193 15-108 (395)
14 2f7f_A Nicotinate phosphoribos 97.0 0.00072 2.5E-08 63.0 5.7 67 127-193 30-128 (494)
15 3crk_C Dihydrolipoyllysine-res 89.4 0.28 9.5E-06 34.4 3.2 23 162-184 22-44 (87)
16 1z6h_A Biotin/lipoyl attachmen 89.4 0.3 1E-05 32.3 3.2 23 163-185 11-33 (72)
17 1iyu_A E2P, dihydrolipoamide a 89.1 0.28 9.7E-06 33.5 3.0 23 163-185 16-38 (79)
18 2d5d_A Methylmalonyl-COA decar 88.3 0.39 1.3E-05 31.7 3.2 22 164-185 18-39 (74)
19 2dnc_A Pyruvate dehydrogenase 88.1 0.36 1.2E-05 35.1 3.1 24 162-185 24-47 (98)
20 1qjo_A Dihydrolipoamide acetyl 87.4 0.37 1.2E-05 32.8 2.7 24 162-185 17-40 (80)
21 1ghj_A E2, E2, the dihydrolipo 86.2 0.3 1E-05 33.3 1.7 22 163-184 19-40 (79)
22 1k8m_A E2 component of branche 86.1 0.37 1.3E-05 34.5 2.2 24 161-184 20-43 (93)
23 1dcz_A Transcarboxylase 1.3S s 86.0 0.63 2.2E-05 31.2 3.2 21 164-184 21-41 (77)
24 2dne_A Dihydrolipoyllysine-res 85.9 0.43 1.5E-05 35.4 2.5 24 162-185 24-47 (108)
25 1gjx_A Pyruvate dehydrogenase; 85.5 0.41 1.4E-05 32.7 2.1 24 162-185 18-41 (81)
26 1bdo_A Acetyl-COA carboxylase; 85.3 0.39 1.3E-05 32.7 2.0 22 164-185 24-45 (80)
27 2dn8_A Acetyl-COA carboxylase 85.1 0.54 1.9E-05 33.8 2.7 33 134-184 18-50 (100)
28 2kcc_A Acetyl-COA carboxylase 84.4 0.64 2.2E-05 32.5 2.7 22 163-184 17-38 (84)
29 2k32_A A; NMR {Campylobacter j 84.2 0.73 2.5E-05 33.4 3.1 22 164-185 14-35 (116)
30 2dsj_A Pyrimidine-nucleoside ( 84.1 8.1 0.00028 35.4 10.6 58 129-187 324-394 (423)
31 1brw_A PYNP, protein (pyrimidi 83.7 7.7 0.00026 35.5 10.3 59 129-187 331-402 (433)
32 2l5t_A Lipoamide acyltransfera 83.7 0.33 1.1E-05 32.9 1.0 24 162-185 18-41 (77)
33 1y8o_B Dihydrolipoyllysine-res 83.3 0.83 2.8E-05 35.2 3.2 23 162-184 44-66 (128)
34 2ejm_A Methylcrotonoyl-COA car 83.1 0.78 2.7E-05 33.0 2.8 21 164-184 27-47 (99)
35 2jku_A Propionyl-COA carboxyla 80.9 0.72 2.5E-05 32.9 1.9 21 164-184 38-58 (94)
36 1uou_A Thymidine phosphorylase 80.3 5.5 0.00019 37.0 8.1 59 129-187 368-437 (474)
37 3h5q_A PYNP, pyrimidine-nucleo 78.2 5.1 0.00017 36.9 7.1 55 129-183 334-401 (436)
38 1pmr_A Dihydrolipoyl succinylt 75.6 0.29 1E-05 33.6 -1.5 22 163-184 20-41 (80)
39 2tpt_A Thymidine phosphorylase 69.9 6.6 0.00023 36.0 5.7 59 129-187 336-407 (440)
40 3fpp_A Macrolide-specific effl 67.0 3.2 0.00011 34.8 2.7 22 164-185 44-65 (341)
41 2k7v_A Dihydrolipoyllysine-res 66.5 0.54 1.9E-05 32.7 -1.8 21 163-183 14-34 (85)
42 2f1m_A Acriflavine resistance 66.2 2.2 7.4E-05 34.8 1.5 22 164-185 35-56 (277)
43 2d5d_A Methylmalonyl-COA decar 65.1 11 0.00036 24.5 4.6 34 132-183 41-74 (74)
44 3our_B EIIA, phosphotransferas 63.6 4.6 0.00016 33.4 3.0 22 162-183 117-138 (183)
45 3lnn_A Membrane fusion protein 63.1 3.7 0.00013 34.7 2.4 22 164-185 70-91 (359)
46 2gpr_A Glucose-permease IIA co 62.6 5.1 0.00017 31.8 3.0 22 162-183 90-111 (154)
47 1dcz_A Transcarboxylase 1.3S s 60.4 13 0.00044 24.5 4.3 34 132-183 44-77 (77)
48 1f3z_A EIIA-GLC, glucose-speci 59.4 6.2 0.00021 31.6 3.0 22 162-183 95-116 (161)
49 3n6r_A Propionyl-COA carboxyla 55.5 7.2 0.00025 37.1 3.2 22 163-184 624-645 (681)
50 4dk0_A Putative MACA; alpha-ha 54.8 3.6 0.00012 34.8 0.9 49 127-185 18-66 (369)
51 1ax3_A Iiaglc, glucose permeas 54.6 5.8 0.0002 31.8 2.0 22 162-183 95-116 (162)
52 1vf7_A Multidrug resistance pr 54.5 5 0.00017 34.5 1.8 22 164-185 56-77 (369)
53 2auk_A DNA-directed RNA polyme 52.3 7.4 0.00025 31.6 2.4 20 163-182 62-81 (190)
54 3ne5_B Cation efflux system pr 51.6 8.9 0.00031 33.7 3.0 22 164-185 134-156 (413)
55 2l5t_A Lipoamide acyltransfera 49.9 13 0.00046 24.6 3.0 19 165-183 58-76 (77)
56 1bdo_A Acetyl-COA carboxylase; 49.6 11 0.00039 25.2 2.6 34 132-183 47-80 (80)
57 1z6h_A Biotin/lipoyl attachmen 48.4 14 0.00047 24.0 2.8 35 132-184 35-69 (72)
58 2auk_A DNA-directed RNA polyme 48.3 10 0.00035 30.8 2.6 22 162-183 165-186 (190)
59 1iyu_A E2P, dihydrolipoamide a 45.2 20 0.00067 24.0 3.3 37 132-186 40-76 (79)
60 3hbl_A Pyruvate carboxylase; T 44.6 13 0.00044 37.8 3.2 22 163-184 1089-1110(1150)
61 3va7_A KLLA0E08119P; carboxyla 43.5 13 0.00045 38.1 3.1 22 163-184 1179-1200(1236)
62 1ghj_A E2, E2, the dihydrolipo 41.7 16 0.00053 24.5 2.3 21 164-184 57-77 (79)
63 1zko_A Glycine cleavage system 40.1 45 0.0015 25.8 5.0 41 140-184 29-70 (136)
64 3u9t_A MCC alpha, methylcroton 39.8 6.1 0.00021 37.6 0.0 24 161-184 612-635 (675)
65 3crk_C Dihydrolipoyllysine-res 38.0 25 0.00085 24.1 3.0 23 164-186 61-84 (87)
66 1k8m_A E2 component of branche 37.5 26 0.0009 24.6 3.1 23 164-186 60-82 (93)
67 2k7v_A Dihydrolipoyllysine-res 37.3 24 0.00082 24.0 2.8 37 131-185 37-73 (85)
68 3cdx_A Succinylglutamatedesucc 36.6 22 0.00077 30.8 3.1 23 163-185 278-300 (354)
69 3na6_A Succinylglutamate desuc 36.2 23 0.00078 30.6 3.1 21 165-185 270-290 (331)
70 3dva_I Dihydrolipoyllysine-res 35.2 8 0.00027 35.0 0.0 73 91-185 4-79 (428)
71 2xhc_A Transcription antitermi 34.6 19 0.00066 32.0 2.4 20 162-181 60-79 (352)
72 3bg3_A Pyruvate carboxylase, m 34.4 16 0.00055 35.4 2.0 23 162-184 660-682 (718)
73 3fmc_A Putative succinylglutam 32.3 28 0.00095 30.7 3.0 21 164-184 302-322 (368)
74 3it5_A Protease LASA; metallop 29.6 28 0.00096 27.9 2.4 17 166-182 86-102 (182)
75 2qf7_A Pyruvate carboxylase pr 29.3 27 0.00093 35.4 2.7 23 162-184 1106-1128(1165)
76 2dnc_A Pyruvate dehydrogenase 27.5 32 0.0011 24.5 2.2 39 131-187 48-87 (98)
77 1y8o_B Dihydrolipoyllysine-res 25.3 58 0.002 24.7 3.4 40 131-188 68-108 (128)
78 3os4_A Naprtase, nicotinate ph 24.3 16 0.00055 33.2 -0.0 61 129-189 32-118 (407)
79 1hpc_A H protein of the glycin 23.7 1.1E+02 0.0037 23.3 4.6 41 141-184 21-61 (131)
80 2dne_A Dihydrolipoyllysine-res 23.6 46 0.0016 24.2 2.4 40 131-188 48-88 (108)
81 2hsi_A Putative peptidase M23; 23.6 37 0.0013 29.1 2.2 18 165-182 232-249 (282)
82 2wfu_B Probable insulin-like p 23.4 41 0.0014 19.5 1.6 16 27-42 2-17 (26)
83 3ne5_B Cation efflux system pr 23.3 56 0.0019 28.5 3.3 37 131-185 205-241 (413)
84 1zy8_K Pyruvate dehydrogenase 22.1 19 0.00064 30.0 0.0 71 91-183 5-79 (229)
85 3a7l_A H-protein, glycine clea 21.8 90 0.0031 23.6 3.8 40 143-185 24-63 (128)
86 3klr_A Glycine cleavage system 21.8 96 0.0033 23.6 4.0 42 141-185 17-58 (125)
87 1qwy_A Peptidoglycan hydrolase 21.5 43 0.0015 29.3 2.2 18 165-182 239-256 (291)
88 1onl_A Glycine cleavage system 21.2 1.3E+02 0.0045 22.7 4.7 42 141-185 21-62 (128)
89 3tuf_B Stage II sporulation pr 20.6 44 0.0015 28.2 2.0 20 164-183 134-153 (245)
90 3tzu_A GCVH, glycine cleavage 20.1 1.1E+02 0.0037 23.8 4.0 39 143-184 36-74 (137)
91 3d4r_A Domain of unknown funct 20.1 84 0.0029 25.6 3.5 25 160-184 109-133 (169)
No 1
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=99.87 E-value=1e-22 Score=180.33 Aligned_cols=101 Identities=23% Similarity=0.286 Sum_probs=89.2
Q ss_pred cCCCCCChhhHHHHHHHHHhhhcCCCCCccCccccCCCcEEEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCC
Q 029418 92 IKLPSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGD 171 (193)
Q Consensus 92 ~~~p~~p~~~L~~~I~~aL~EDig~~GDlTT~ali~~d~~akA~IiAKEdGVlAGl~va~~IF~~ldp~leve~~v~DGd 171 (193)
-+||.+.+..+++.|++||+||+|+.||+||.++++++. +++.+++||+||+||++++.++|+.+|++++++|+++||+
T Consensus 16 ~~~~~~~~~~~~~~i~~~L~ED~g~~gD~tt~~l~~~~~-~~a~i~are~gVlaG~~~a~~vf~~l~~~~~v~~~~~dG~ 94 (300)
T 3l0g_A 16 TQGPGSMKISFSEIIHNALKEDLGDKGDITTNSILINEK-VNFAINTRENLVVCGIPILEEVFNMNKEHVKYEIHKKDGD 94 (300)
T ss_dssp --------CCCHHHHHHHHHHHHTTTCCHHHHHHCSSCE-EEEEEEESSCEECCCHHHHHHHHHHTTTTEEEEECCCTTC
T ss_pred CCCCcchHHHHHHHHHHHHHhhCCCCCCcchhhcccCCc-EEEEEEECCCeEEEcHHHHHHHHHHcCCCeEEEEEeCCCC
Confidence 467777788899999999999999329999998888888 9999999999999999999999999999999999999999
Q ss_pred eeecCCEEEEEEeChhhhcccC
Q 029418 172 HVHKGLQFGKVSGKPRKINSFW 193 (193)
Q Consensus 172 ~V~kGdvIleV~G~ArsLL~aE 193 (193)
.|++|++|++++|++++||++|
T Consensus 95 ~v~~g~~v~~i~G~a~~ll~~E 116 (300)
T 3l0g_A 95 ITGKNSTLVSGEALAIYLLPIE 116 (300)
T ss_dssp EECSSCEEEEEEEEHHHHGGGH
T ss_pred EeeCCCEEEEEEECHHHHHHHH
Confidence 9999999999999999999987
No 2
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=99.87 E-value=1.6e-22 Score=177.11 Aligned_cols=98 Identities=33% Similarity=0.437 Sum_probs=91.9
Q ss_pred CCCChhhHHHHHHHHHhhhcCCCCCccCccccCCCcEEEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeee
Q 029418 95 PSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVH 174 (193)
Q Consensus 95 p~~p~~~L~~~I~~aL~EDig~~GDlTT~ali~~d~~akA~IiAKEdGVlAGl~va~~IF~~ldp~leve~~v~DGd~V~ 174 (193)
-.|.+..+++.|++||+||+|+ ||+||.++++++..+++++++||+||+||++++.++|+.+|++++++|+++||+.|+
T Consensus 7 ~~~~~~~~~~~i~~~l~ED~~~-gD~Tt~~~~~~~~~~~a~~~ar~~gv~aG~~~~~~~f~~~~~~~~v~~~~~dG~~v~ 85 (286)
T 1x1o_A 7 EALWQGGLEEALRAWLREDLGQ-GDLTSLLVVPEDLEGEAVILAKEGGVLAGLWVAERVFALADPRTAFTPLVAEGARVA 85 (286)
T ss_dssp ---CCSSHHHHHHHHHHHHHTT-CCHHHHHHSCTTCEEEEEEEESSCEECCCHHHHHHHHHHHCTTCEEEESSCTTCEEC
T ss_pred cccCcccHHHHHHHHHHhcCCC-CCccchhhcCCCCeEEEEEEECCCEEEECHHHHHHHHHHcCCCEEEEEEcCCCCCcc
Confidence 4577788999999999999997 999999988889999999999999999999999999999999999999999999999
Q ss_pred cCCEEEEEEeChhhhcccC
Q 029418 175 KGLQFGKVSGKPRKINSFW 193 (193)
Q Consensus 175 kGdvIleV~G~ArsLL~aE 193 (193)
+|++|++++|++++||++|
T Consensus 86 ~g~~v~~i~G~~~~ll~~E 104 (286)
T 1x1o_A 86 EGTEVARVRGPLRGILAGE 104 (286)
T ss_dssp TTCEEEEEEEEHHHHHHHH
T ss_pred CCCEEEEEEEcHHHHHHHH
Confidence 9999999999999999987
No 3
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=99.86 E-value=5.5e-22 Score=174.58 Aligned_cols=98 Identities=22% Similarity=0.410 Sum_probs=92.6
Q ss_pred CCCCCChhhHHHHHHHHHhhhcCCCCCccCccccCCCcEEEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCe
Q 029418 93 KLPSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDH 172 (193)
Q Consensus 93 ~~p~~p~~~L~~~I~~aL~EDig~~GDlTT~ali~~d~~akA~IiAKEdGVlAGl~va~~IF~~ldp~leve~~v~DGd~ 172 (193)
+++.+|...+++.|++||+||+|+ ||+|+. + +++.++++.+++||+||+||++++.++|+.+|++++++|+++||+.
T Consensus 10 ~~~~~~~~~~~~~i~~~L~ED~~~-gD~T~~-~-~~~~~~~a~i~are~gVlaG~~~a~~vf~~l~~~~~v~~~~~dG~~ 86 (287)
T 3tqv_A 10 QINKVPNDIVTRLVRESLAEDIAT-GDITAQ-L-AEDIDTTAFCITREEMILCGQDFANEVINQLDKNIQITWLYSDAQK 86 (287)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHTT-CCGGGG-G-SCSCEEEEEEEESSCEECCCHHHHHHHHHHHCTTCEEEESSCTTCE
T ss_pred ccccchHHHHHHHHHHHHHhhCCC-Cccccc-C-CCCCeEEEEEEECCCeEEEcHHHHHHHHHHcCCCeEEEEEeCCCCE
Confidence 456678889999999999999997 999985 6 8889999999999999999999999999999999999999999999
Q ss_pred eecCCEEEEEEeChhhhcccC
Q 029418 173 VHKGLQFGKVSGKPRKINSFW 193 (193)
Q Consensus 173 V~kGdvIleV~G~ArsLL~aE 193 (193)
|++|++|++++|++++||++|
T Consensus 87 v~~g~~v~~i~G~a~~ll~~E 107 (287)
T 3tqv_A 87 VPANARIFELKGNVRSILTAE 107 (287)
T ss_dssp ECTTCEEEEEEEEHHHHHHHH
T ss_pred eeCCCEEEEEEEcHHHHHHHH
Confidence 999999999999999999987
No 4
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=99.83 E-value=5.7e-21 Score=170.31 Aligned_cols=92 Identities=26% Similarity=0.452 Sum_probs=88.1
Q ss_pred hhHHHHHHHHHhhhcC-----CCCCccCccccCCCcEEEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeee
Q 029418 100 YDLKGVVKLALAEDAG-----DRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVH 174 (193)
Q Consensus 100 ~~L~~~I~~aL~EDig-----~~GDlTT~ali~~d~~akA~IiAKEdGVlAGl~va~~IF~~ldp~leve~~v~DGd~V~ 174 (193)
..+++.|+.||+||+| + ||+||. +++++..+++.+++||+||+||++++.++|+.+|++++++|+++||+.|+
T Consensus 44 ~~~~~~i~~~L~ED~~~~~~~~-gD~Tt~-~~~~~~~~~a~i~are~gVlaG~~~a~~vf~~ld~~~~v~~~~~dG~~v~ 121 (320)
T 3paj_A 44 ADITRSVIDTLKEDLGGTLDPA-ADITAS-LIPADRISTATIITREAGVFCGQLWADEVFKQLGGQVSIEWHVQDGDTLT 121 (320)
T ss_dssp HHHHHHHHHHHHHHHTSCCCGG-GCTTGG-GSCTTCEEEEEEEESSCEECCCHHHHHHHHHHTTSCCEEEESSCTTCEEC
T ss_pred HHHHHHHHHHHHhhCCCCCCCC-Cccccc-ccCCCCeEEEEEEECCCceEecHHHHHHHHHHcCCCeEEEEEeCCCCEec
Confidence 4688999999999999 7 899998 78889999999999999999999999999999998999999999999999
Q ss_pred cCCEEEEEEeChhhhcccC
Q 029418 175 KGLQFGKVSGKPRKINSFW 193 (193)
Q Consensus 175 kGdvIleV~G~ArsLL~aE 193 (193)
+|++|++++|++++||++|
T Consensus 122 ~g~~l~~v~G~a~~ll~~E 140 (320)
T 3paj_A 122 PNQTLCTLTGPARILLTGE 140 (320)
T ss_dssp TTCEEEEEEEEHHHHHHHH
T ss_pred CCCEEEEEEecHHHHHHHH
Confidence 9999999999999999987
No 5
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=99.83 E-value=4.3e-21 Score=167.88 Aligned_cols=92 Identities=21% Similarity=0.312 Sum_probs=87.4
Q ss_pred hhHHHHHHHHHhhhcCCCC--CccCccccCCCcEEEEEEEeeCCeEEEcHHHHHHHHHH-c-CCCcEEEEEcCCCCeeec
Q 029418 100 YDLKGVVKLALAEDAGDRG--DVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHE-V-DPSLKVEWSLKDGDHVHK 175 (193)
Q Consensus 100 ~~L~~~I~~aL~EDig~~G--DlTT~ali~~d~~akA~IiAKEdGVlAGl~va~~IF~~-l-dp~leve~~v~DGd~V~k 175 (193)
..+++.|+.||+||+|+ | |+||.++ +++..+++++++||+||+||++++.++|+. + |++++++|+++||+.|++
T Consensus 8 ~~~~~~i~~~l~ED~~~-g~~D~Tt~~~-~~~~~~~a~~~ar~~gv~aG~~~~~~~f~~~~~~~~~~v~~~~~dG~~v~~ 85 (284)
T 1qpo_A 8 AAARAAIARGLDEDLRY-GPDVTTLATV-PASATTTASLVTREAGVVAGLDVALLTLNEVLGTNGYRVLDRVEDGARVPP 85 (284)
T ss_dssp HHHHHHHHHHHHHHHTT-CCCHHHHHHS-CTTCEEEEEEEESSCEECCCHHHHHHHHHHHHCTTSEEEEEECCTTCEECT
T ss_pred HHHHHHHHHHHHHhCCC-CCCCcccccc-CCCCeEEEEEEECCCEEEECHHHHHHHHHHhCCCCCEEEEEEcCCCCEecC
Confidence 35788999999999997 8 9999988 888899999999999999999999999999 8 888999999999999999
Q ss_pred CCEEEEEEeChhhhcccC
Q 029418 176 GLQFGKVSGKPRKINSFW 193 (193)
Q Consensus 176 GdvIleV~G~ArsLL~aE 193 (193)
|++|++++|++++||++|
T Consensus 86 g~~v~~i~G~~~~ll~~E 103 (284)
T 1qpo_A 86 GEALMTLEAQTRGLLTAE 103 (284)
T ss_dssp TCEEEEEEEEHHHHHHHH
T ss_pred CcEEEEEEEeHHHHHHHH
Confidence 999999999999999987
No 6
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=99.83 E-value=5.2e-21 Score=169.13 Aligned_cols=92 Identities=27% Similarity=0.475 Sum_probs=82.6
Q ss_pred hhHHHHHHHHHhhhcCCCCCccCccccCCCcEEEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeecCCEE
Q 029418 100 YDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQF 179 (193)
Q Consensus 100 ~~L~~~I~~aL~EDig~~GDlTT~ali~~d~~akA~IiAKEdGVlAGl~va~~IF~~ldp~leve~~v~DGd~V~kGdvI 179 (193)
..+++.|++||+||+|+ ||+||.. ++++..+++.+++||+||+||++++.++|+.+|++++++|+++||+.|++|++|
T Consensus 27 ~~~~~~i~~~L~ED~~~-gD~Tt~~-~~~~~~~~a~i~are~gVlaG~~~a~~vf~~l~~~~~v~~~~~dG~~v~~g~~l 104 (298)
T 3gnn_A 27 AAIARNVADALAEDVGS-GDQTGRL-VPDGAPRRARVIVREDAVLCGVPWFDAVVRAVDPSIEVDWRHREGDRMSADSTV 104 (298)
T ss_dssp HHHHHHHHHHHHHHHHH-C-----C-CCCCSEEEEEEEECSCEECCCHHHHHHHHHHHCTTCEEEESSCTTCEECTTCEE
T ss_pred HHHHHHHHHHHHhcCCC-CCchhhh-cCCCceEEEEEEECCCEEEEcHHHHHHHHHHcCCCeEEEEEcCCCCEecCCCEE
Confidence 36889999999999997 9999985 678889999999999999999999999999999999999999999999999999
Q ss_pred EEEEeChhhhcccC
Q 029418 180 GKVSGKPRKINSFW 193 (193)
Q Consensus 180 leV~G~ArsLL~aE 193 (193)
++++|++++||++|
T Consensus 105 ~~v~G~a~~ll~~E 118 (298)
T 3gnn_A 105 CELRGPARALLTAE 118 (298)
T ss_dssp EEEEEEHHHHHHHH
T ss_pred EEEEecHHHHHHHH
Confidence 99999999999987
No 7
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=99.82 E-value=1.6e-20 Score=164.55 Aligned_cols=98 Identities=19% Similarity=0.317 Sum_probs=86.5
Q ss_pred CcCCCCCChhhHHHHHHHHHhhhcCCCCCccCccccCCCcEEEEEEEeeCC-eEEEcHHHHHHHHHHcCCCcEEEEEcCC
Q 029418 91 AIKLPSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKED-GIIAGIALAEMIFHEVDPSLKVEWSLKD 169 (193)
Q Consensus 91 ~~~~p~~p~~~L~~~I~~aL~EDig~~GDlTT~ali~~d~~akA~IiAKEd-GVlAGl~va~~IF~~ldp~leve~~v~D 169 (193)
.|---.|.....++.|+.||+||+|+ ||+||.++ ++..+++++++||+ ||+||++++.++|+.+| ++++|+++|
T Consensus 5 ~~~~~~~~~~~~~~~i~~~l~ED~~~-gD~Tt~~~--~~~~~~a~~~ar~~pgv~aG~~~~~~~f~~~~--~~v~~~~~d 79 (285)
T 1o4u_A 5 KIHHHHHHMEKILDLLMSFVKEDEGK-LDLASFPL--RNTTAGAHLLLKTENVVASGIEVSRMFLEKMG--LLSKFNVED 79 (285)
T ss_dssp --------CHHHHHHHHHHHHHHHCS-CCTTTGGG--TTCEEEEEEEECCSEEECCSHHHHHHHHHHTT--CEEEESCCT
T ss_pred ccchhhhhhhhhHHHHHHHHHhcCCC-CCccchhc--cCCeEEEEEEEcCCCeEEEcHHHHHHHHHHcC--CEEEEEcCC
Confidence 44455677888999999999999997 99999987 67889999999999 99999999999999998 999999999
Q ss_pred CCeeecCCEEEEEEeChhhhcccC
Q 029418 170 GDHVHKGLQFGKVSGKPRKINSFW 193 (193)
Q Consensus 170 Gd~V~kGdvIleV~G~ArsLL~aE 193 (193)
|+.|++|++|++++|++++||++|
T Consensus 80 G~~v~~g~~v~~i~G~~~~ll~~E 103 (285)
T 1o4u_A 80 GEYLEGTGVIGEIEGNTYKLLVAE 103 (285)
T ss_dssp TCEEESCEEEEEEEEEHHHHHHHH
T ss_pred CCCcCCCCEEEEEEEcHHHHHHHH
Confidence 999999999999999999999987
No 8
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=99.79 E-value=1e-19 Score=159.85 Aligned_cols=92 Identities=27% Similarity=0.490 Sum_probs=86.7
Q ss_pred hhHHHHHHHHHhhhcCCCC-----CccCccccCCCcEEEEEEEeeCCeEEEcHHHHHHHHHHc-CCCcEEEEEcCCCCee
Q 029418 100 YDLKGVVKLALAEDAGDRG-----DVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEV-DPSLKVEWSLKDGDHV 173 (193)
Q Consensus 100 ~~L~~~I~~aL~EDig~~G-----DlTT~ali~~d~~akA~IiAKEdGVlAGl~va~~IF~~l-dp~leve~~v~DGd~V 173 (193)
.++++.|+.||+||+| .+ |+||.++ +++..+++++++||+||+||++++.++|+.+ |++++++|+++||+.|
T Consensus 20 ~~~~~~i~~~l~ED~~-g~~~~~~D~Tt~~~-~~~~~~~a~~~ar~~gv~aG~~~~~~~f~~~~~~~~~v~~~~~dG~~v 97 (296)
T 1qap_A 20 LDIPAAVAQALREDLG-GEVDAGNDITAQLL-PADTQAHATVITREDGVFCGKRWVEEVFIQLAGDDVRLTWHVDDGDAI 97 (296)
T ss_dssp HHHHHHHHHHHHHHTT-TSCCGGGCTGGGGS-CTTCEECCEEEESSCEECCCHHHHHHHHHHHHTTSSEEEESCCTTCEE
T ss_pred cCHHHHHHHHHHHhCC-CCCCCCCCcccccc-CCCCeEEEEEEECCCEEEECHHHHHHHHHhcCCCCeEEEEEcCCCCEe
Confidence 4588999999999999 23 9999988 8888999999999999999999999999999 9899999999999999
Q ss_pred ecCCEEEEEEeChhhhcccC
Q 029418 174 HKGLQFGKVSGKPRKINSFW 193 (193)
Q Consensus 174 ~kGdvIleV~G~ArsLL~aE 193 (193)
.+|++|++++|+++++|++|
T Consensus 98 ~~g~~~~~v~G~~~~~l~~E 117 (296)
T 1qap_A 98 HANQTVFELQGPARVLLTGE 117 (296)
T ss_dssp CTTCEEEEEEEEHHHHHHHH
T ss_pred cCCCEEEEEEEcHHHHHHHH
Confidence 99999999999999999887
No 9
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*
Probab=99.78 E-value=1.8e-19 Score=155.87 Aligned_cols=89 Identities=19% Similarity=0.290 Sum_probs=84.3
Q ss_pred hHHHHHHHHHhhhcCCCCCccCccccCCCcEEEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeecCCEEE
Q 029418 101 DLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFG 180 (193)
Q Consensus 101 ~L~~~I~~aL~EDig~~GDlTT~ali~~d~~akA~IiAKEdGVlAGl~va~~IF~~ldp~leve~~v~DGd~V~kGdvIl 180 (193)
++++.|+.||+||+|+ ||+||. +++++.++++.+++|++||+||++++.++|+.++ ++++|.++||+.|.+|++|+
T Consensus 2 ~~~~~i~~~l~eD~~~-gd~tt~-~~~~~~~~~~~~~~r~~~v~aG~~~~~~~~~~~~--~~v~~~~~eG~~v~~g~~~~ 77 (273)
T 2b7n_A 2 EIRTFLERALKEDLGH-GDLFER-VLEKDFKATAFVRAKQEGVFSGEKYALELLEMTG--IECVQTIKDKERFKPKDALM 77 (273)
T ss_dssp TTHHHHHHHHHHHHTT-CCSHHH-HCSCCCEEEEEEEESSCEECCCHHHHHHHHHHTT--CEEEEECCTTCEECTTCEEE
T ss_pred cHHHHHHHHHHhcCCC-CCceee-ccCCCCeEEEEEEEcCCEEEEcHHHHHHHHHHCC--cEEEEEcCCCCCcCCCCEEE
Confidence 3678999999999997 999998 5677889999999999999999999999999998 99999999999999999999
Q ss_pred EEEeChhhhcccC
Q 029418 181 KVSGKPRKINSFW 193 (193)
Q Consensus 181 eV~G~ArsLL~aE 193 (193)
+++|+++++|++|
T Consensus 78 ~v~G~~~~~l~~E 90 (273)
T 2b7n_A 78 EIRGDFSMLLKVE 90 (273)
T ss_dssp EEEEEHHHHHHHH
T ss_pred EEEecHHHHHHHH
Confidence 9999999999887
No 10
>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A
Probab=99.77 E-value=6.1e-19 Score=154.70 Aligned_cols=88 Identities=22% Similarity=0.292 Sum_probs=83.7
Q ss_pred hHHHHHHHHHhhhcCCCCCccCccccCCCcEEEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeecCCEEE
Q 029418 101 DLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFG 180 (193)
Q Consensus 101 ~L~~~I~~aL~EDig~~GDlTT~ali~~d~~akA~IiAKEdGVlAGl~va~~IF~~ldp~leve~~v~DGd~V~kGdvIl 180 (193)
.+++.|+.||+||+|+ ||+||. +++ +.++++.+++|++||+||++++.++|+.+| ++++|.++||+.|.+|++|+
T Consensus 16 ~~~~~i~~~l~ED~~~-gD~tt~-~~~-~~~~~~~~~~r~~~v~aG~~~~~~~~~~~~--~~v~~~~~dG~~v~~g~~l~ 90 (299)
T 2jbm_A 16 TLAALVDSWLREDCPG-LNYAAL-VSG-AGPSQAALWAKSPGVLAGQPFFDAIFTQLN--CQVSWFLPEGSKLVPVARVA 90 (299)
T ss_dssp HHHHHHHHHHHHHCSS-CCTTHH-HHC-SCEEEEEEEECSCEECCCHHHHHHHHHHTT--CEEEESSCTTCEECSSEEEE
T ss_pred hHHHHHHHHHHhhCCC-CCceee-ccC-CCeEEEEEEEcCCEEEEcHHHHHHHHHHcC--CEEEEEcCCCCCCCCCCEEE
Confidence 4899999999999997 999998 566 888999999999999999999999999998 99999999999999999999
Q ss_pred EEEeChhhhcccC
Q 029418 181 KVSGKPRKINSFW 193 (193)
Q Consensus 181 eV~G~ArsLL~aE 193 (193)
+++|+++++|++|
T Consensus 91 ~v~G~~~~~l~~E 103 (299)
T 2jbm_A 91 EVRGPAHCLLLGE 103 (299)
T ss_dssp EEEEEHHHHHHHH
T ss_pred EEEEcHHHHHHHH
Confidence 9999999999887
No 11
>3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A*
Probab=99.75 E-value=1.3e-18 Score=152.41 Aligned_cols=88 Identities=25% Similarity=0.428 Sum_probs=83.8
Q ss_pred hHHHHHHHHHhhhcCCCCCccCccccCCCcEEEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeecC----
Q 029418 101 DLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKG---- 176 (193)
Q Consensus 101 ~L~~~I~~aL~EDig~~GDlTT~ali~~d~~akA~IiAKEdGVlAGl~va~~IF~~ldp~leve~~v~DGd~V~kG---- 176 (193)
.+++.|++||+||+|+ ||+||. +++ +..+++.+++|++||+||++++.++|+.++ ++++|.++||+.|.+|
T Consensus 12 ~~~~~i~~~l~ED~~~-gD~tt~-~~~-~~~~~~~~~~r~~~v~aG~~~~~~~~~~~~--~~v~~~~~eG~~v~~g~~~~ 86 (294)
T 3c2e_A 12 AWRQDVTNWLSEDVPS-FDFGGY-VVG-SDLKEANLYCKQDGMLCGVPFAQEVFNQCE--LQVEWLFKEGSFLEPSKNDS 86 (294)
T ss_dssp HHHHHHHHHHHHHCSS-CCHHHH-HHC-SCEEEEEEEECSSEECCCHHHHHHHHHHTT--CEEEESSCTTCEECGGGSSS
T ss_pred hHHHHHHHHHHhcCCC-CCcccc-ccC-CCeEEEEEEECCCEEEEcHHHHHHHHHHcC--CEEEEEeCCCCEeCCCCCCC
Confidence 4899999999999997 999998 566 888999999999999999999999999998 9999999999999999
Q ss_pred --CEEEEEEeChhhhcccC
Q 029418 177 --LQFGKVSGKPRKINSFW 193 (193)
Q Consensus 177 --dvIleV~G~ArsLL~aE 193 (193)
++|++++|+++++|++|
T Consensus 87 ~~~~l~~v~G~~~~~l~~E 105 (294)
T 3c2e_A 87 GKIVVAKITGPAKNILLAE 105 (294)
T ss_dssp SCEEEEEEEEEHHHHHHHH
T ss_pred CCcEEEEEEEcHHHHHHHH
Confidence 99999999999999887
No 12
>2i1o_A Nicotinate phosphoribosyltransferase; ZIN ION, zinc finger M structural genomics, PSI, protein structure initiative; 2.40A {Thermoplasma acidophilum} PDB: 1ytd_A* 1yte_A* 1ytk_A
Probab=98.93 E-value=3.5e-10 Score=102.76 Aligned_cols=85 Identities=16% Similarity=0.129 Sum_probs=75.9
Q ss_pred HHHHHHHHhhhcCCCCCccCcccc---CCCcEEEEEEEeeC----CeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeec
Q 029418 103 KGVVKLALAEDAGDRGDVTCMATI---PLDMEVEAHFLAKE----DGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHK 175 (193)
Q Consensus 103 ~~~I~~aL~EDig~~GDlTT~ali---~~d~~akA~IiAKE----dGVlAGl~va~~IF~~ldp~leve~~v~DGd~V~k 175 (193)
++.|+.+|.||++. |.|+.++. + +.++++.+++|+ .||+||++++.++|+.++ +++. .++||+.|.+
T Consensus 15 ~~~I~~~L~tD~Y~--~tm~~~~~~~~~-~~~~~~~~~~R~~p~~~~v~aGl~~~~~~l~~~~--~~i~-~~~eG~~v~~ 88 (398)
T 2i1o_A 15 DEDIKKGLASDVYF--ERTISAIGDKCN-DLRVAMEATVSGPLDTWINFTGLDEVLKLLEGLD--VDLY-AIPEGTILFP 88 (398)
T ss_dssp HHHHHHTCSSCTHH--HHHHHHHGGGGG-GCEEEEEEEECSCCSSCEECCCHHHHHHHHTTSS--CEEE-ECCTTCEECS
T ss_pred HHHHHHHHHhhhhH--HHHHHHHHHhCC-CCeEEEEEEECCCCCcceEEcCHHHHHHHHhhCC--eEEE-EeCCCCEECC
Confidence 46799999999983 88887765 5 778999999999 999999999999998554 7886 9999999999
Q ss_pred CC------EEEEEEeChhhhcccC
Q 029418 176 GL------QFGKVSGKPRKINSFW 193 (193)
Q Consensus 176 Gd------vIleV~G~ArsLL~aE 193 (193)
|+ ++++|+|+++.++.+|
T Consensus 89 g~~~g~~~~ll~v~G~~~~~~~~E 112 (398)
T 2i1o_A 89 RDANGLPVPFIRVEGRYCDFGMYE 112 (398)
T ss_dssp BCTTSCBCEEEEEEEEHHHHGGGH
T ss_pred CCcccccceEEEEEEeHHHHHHHH
Confidence 99 9999999999999876
No 13
>2i14_A Nicotinate-nucleotide pyrophosphorylase; ligand binding, phosphoribosylpyrophosphate, Zn metal ION, structural genomics, PSI; HET: PCP; 2.90A {Pyrococcus furiosus} SCOP: c.1.17.1 d.41.2.1
Probab=98.93 E-value=2.5e-10 Score=103.58 Aligned_cols=85 Identities=13% Similarity=0.101 Sum_probs=75.8
Q ss_pred HHHHHHHHhhhcCCCCCccCcccc---CCCcEEEEEEEeeC------CeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCee
Q 029418 103 KGVVKLALAEDAGDRGDVTCMATI---PLDMEVEAHFLAKE------DGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHV 173 (193)
Q Consensus 103 ~~~I~~aL~EDig~~GDlTT~ali---~~d~~akA~IiAKE------dGVlAGl~va~~IF~~ldp~leve~~v~DGd~V 173 (193)
++.|+.+|.||++. |.|+.+++ + +.++++.+++|+ +||+||++++.++|+.+ ++++. .++||+.|
T Consensus 15 ~~~I~~~L~tD~Y~--~tm~~~~~~~g~-~~~~~~~~~~R~~p~~~~~~v~aGl~~~~~~l~~~--~~~i~-~~~eG~~v 88 (395)
T 2i14_A 15 EDEIKAGKTTDVYF--LRTKKILEVKNI-RKKVLADVTTTSLPNNWRWGVLVGVEEVAKLLEGI--PVNVY-AMPEGTIF 88 (395)
T ss_dssp HHHHHHTTTSBHHH--HHHHHHHHHTTC-CCEEEEEEECSCCGGGCSCEECCCHHHHHHHHTTS--SEEEE-ECCTTCEE
T ss_pred HHHHHHHHHhhchH--HHHHHHHHHhCC-CCeEEEEEEEcCCCCCCCceEeccHHHHHHHHhCC--CcEEE-EEcCCCEe
Confidence 46799999999983 88888764 4 788999999999 99999999999999854 48886 99999999
Q ss_pred ecCCEEEEEEeChhhhcccC
Q 029418 174 HKGLQFGKVSGKPRKINSFW 193 (193)
Q Consensus 174 ~kGdvIleV~G~ArsLL~aE 193 (193)
.+|+++++|+|+++.++.+|
T Consensus 89 ~~ge~ll~v~G~~~~~~~~E 108 (395)
T 2i14_A 89 HPYEPVLQIEGDYADFGIYE 108 (395)
T ss_dssp CTTSCSEEEEEEHHHHGGGH
T ss_pred cCCCEEEEEEeeHHHHHHHH
Confidence 99999999999999999876
No 14
>2f7f_A Nicotinate phosphoribosyltransferase, putative; structural genomics, PSI; 2.00A {Enterococcus faecalis} SCOP: c.1.17.1 d.41.2.1
Probab=97.01 E-value=0.00072 Score=63.04 Aligned_cols=67 Identities=16% Similarity=0.144 Sum_probs=54.6
Q ss_pred CCCcEEEEEEEeeCC------eEEEcHHHHHHHHHHcCCC-------------------------cEE-EEEcCCCCeee
Q 029418 127 PLDMEVEAHFLAKED------GIIAGIALAEMIFHEVDPS-------------------------LKV-EWSLKDGDHVH 174 (193)
Q Consensus 127 ~~d~~akA~IiAKEd------GVlAGl~va~~IF~~ldp~-------------------------lev-e~~v~DGd~V~ 174 (193)
+.+..+...+++|.. +|+||++.+.+.++.+.-. +.. .+.++||+.|.
T Consensus 30 ~~~~~~~f~~~~R~~p~~~~~~v~aGl~~~l~~l~~l~ft~~ei~yl~~~~~f~~~fl~~L~~~~f~~~i~av~EG~~v~ 109 (494)
T 2f7f_A 30 RADLHAVFECYFREMPFNHGYAIFAGLERLVNYLENLTFTESDIAYLREVEEYPEDFLTYLANFEFKCTVRSALEGDLVF 109 (494)
T ss_dssp CTTCEEEEEEECSSCGGGCSCEECCCHHHHHHHHHTCCCCHHHHHHHHHTSCCCHHHHHHHHTCCCCCEEEECCTTCEEC
T ss_pred CCCCEEEEEEEECCCCCCCceEehHhHHHHHHHHHhCCCCHHHHHHHHhcCCCCHHHHHHHHhCCCCceEEEecCCCccc
Confidence 446778999999986 8999999999998866410 112 46789999999
Q ss_pred cCCEEEEEEeChhhhcccC
Q 029418 175 KGLQFGKVSGKPRKINSFW 193 (193)
Q Consensus 175 kGdvIleV~G~ArsLL~aE 193 (193)
+|+.+++|+|++..++.+|
T Consensus 110 ~g~pll~v~Gp~~~~~~~E 128 (494)
T 2f7f_A 110 NNEPLIQIEGPLAQCQLVE 128 (494)
T ss_dssp TTSCSEEEEEEHHHHHHHH
T ss_pred CCCEEEEEEECHHHHHHHH
Confidence 9999999999999888765
No 15
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=89.41 E-value=0.28 Score=34.44 Aligned_cols=23 Identities=17% Similarity=0.427 Sum_probs=20.8
Q ss_pred EEEEEcCCCCeeecCCEEEEEEe
Q 029418 162 KVEWSLKDGDHVHKGLQFGKVSG 184 (193)
Q Consensus 162 eve~~v~DGd~V~kGdvIleV~G 184 (193)
-.+|++++|+.|++||.+++++.
T Consensus 22 v~~~~v~~Gd~V~~G~~l~~ie~ 44 (87)
T 3crk_C 22 VQRWEKKVGEKLSEGDLLAEIET 44 (87)
T ss_dssp EEEECSCTTCEECTTCEEEEEEC
T ss_pred EEEEEcCCCCEEcCCCEEEEEEC
Confidence 46899999999999999999974
No 16
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=89.37 E-value=0.3 Score=32.33 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=20.2
Q ss_pred EEEEcCCCCeeecCCEEEEEEeC
Q 029418 163 VEWSLKDGDHVHKGLQFGKVSGK 185 (193)
Q Consensus 163 ve~~v~DGd~V~kGdvIleV~G~ 185 (193)
.+|++++|+.|++||.+++++..
T Consensus 11 ~~~~v~~G~~V~~G~~l~~i~~~ 33 (72)
T 1z6h_A 11 WKVHVKAGDQIEKGQEVAILESM 33 (72)
T ss_dssp EEECCCTTCEECTTCEEEEEEET
T ss_pred EEEEcCCcCEECCCCEEEEEECC
Confidence 36889999999999999999853
No 17
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=89.09 E-value=0.28 Score=33.45 Aligned_cols=23 Identities=17% Similarity=0.229 Sum_probs=20.3
Q ss_pred EEEEcCCCCeeecCCEEEEEEeC
Q 029418 163 VEWSLKDGDHVHKGLQFGKVSGK 185 (193)
Q Consensus 163 ve~~v~DGd~V~kGdvIleV~G~ 185 (193)
.+|++++|+.|++||.+++++..
T Consensus 16 ~~~~v~~Gd~V~~G~~l~~le~~ 38 (79)
T 1iyu_A 16 IELLVKTGDLIEVEQGLVVLESA 38 (79)
T ss_dssp EEECCCTTCBCCSSSEEEEEECS
T ss_pred EEEecCCCCEEcCCCEEEEEEcc
Confidence 57889999999999999999754
No 18
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=88.34 E-value=0.39 Score=31.75 Aligned_cols=22 Identities=18% Similarity=0.191 Sum_probs=19.5
Q ss_pred EEEcCCCCeeecCCEEEEEEeC
Q 029418 164 EWSLKDGDHVHKGLQFGKVSGK 185 (193)
Q Consensus 164 e~~v~DGd~V~kGdvIleV~G~ 185 (193)
++++++|++|++||.+++++..
T Consensus 18 ~~~v~~G~~V~~G~~l~~i~~~ 39 (74)
T 2d5d_A 18 RVLVRVGDRVRVGQGLLVLEAM 39 (74)
T ss_dssp EECCCTTCEECTTCEEEEEEET
T ss_pred EEEcCCCCEeCCCCEEEEEecc
Confidence 5788999999999999999853
No 19
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.07 E-value=0.36 Score=35.10 Aligned_cols=24 Identities=25% Similarity=0.501 Sum_probs=21.3
Q ss_pred EEEEEcCCCCeeecCCEEEEEEeC
Q 029418 162 KVEWSLKDGDHVHKGLQFGKVSGK 185 (193)
Q Consensus 162 eve~~v~DGd~V~kGdvIleV~G~ 185 (193)
-.+|++++||.|++||.+++++..
T Consensus 24 i~~~~v~~Gd~V~~G~~L~~ie~~ 47 (98)
T 2dnc_A 24 IVKWLKKEGEAVSAGDALCEIETD 47 (98)
T ss_dssp EEEESSCTTCEECTTSEEEEEECS
T ss_pred EEEEEcCCCCEeCCCCEEEEEEcc
Confidence 468999999999999999999743
No 20
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=87.35 E-value=0.37 Score=32.80 Aligned_cols=24 Identities=29% Similarity=0.282 Sum_probs=20.9
Q ss_pred EEEEEcCCCCeeecCCEEEEEEeC
Q 029418 162 KVEWSLKDGDHVHKGLQFGKVSGK 185 (193)
Q Consensus 162 eve~~v~DGd~V~kGdvIleV~G~ 185 (193)
-.+|++++|+.|++||.+++++..
T Consensus 17 v~~~~v~~G~~V~~G~~l~~ie~~ 40 (80)
T 1qjo_A 17 VTEVMVKVGDKVAAEQSLITVEGD 40 (80)
T ss_dssp EEECCCCTTCEECBTSEEEEEESS
T ss_pred EEEEEcCCCCEECCCCEEEEEEcC
Confidence 457889999999999999999854
No 21
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=86.24 E-value=0.3 Score=33.34 Aligned_cols=22 Identities=18% Similarity=0.391 Sum_probs=19.7
Q ss_pred EEEEcCCCCeeecCCEEEEEEe
Q 029418 163 VEWSLKDGDHVHKGLQFGKVSG 184 (193)
Q Consensus 163 ve~~v~DGd~V~kGdvIleV~G 184 (193)
.+|++++|+.|++||.+++++.
T Consensus 19 ~~~~v~~Gd~V~~G~~l~~ie~ 40 (79)
T 1ghj_A 19 ATWHKKPGEAVKRDELIVDIET 40 (79)
T ss_dssp CCCSSCTTSEECSSCEEEEEEC
T ss_pred EEEEcCCCCEECCCCEEEEEEc
Confidence 4688999999999999999974
No 22
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=86.08 E-value=0.37 Score=34.54 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCeeecCCEEEEEEe
Q 029418 161 LKVEWSLKDGDHVHKGLQFGKVSG 184 (193)
Q Consensus 161 leve~~v~DGd~V~kGdvIleV~G 184 (193)
.-.+|++++||.|++||.+++++.
T Consensus 20 ~v~~~~v~~Gd~V~~G~~l~~ie~ 43 (93)
T 1k8m_A 20 TVKEWYVKEGDTVSQFDSICEVQS 43 (93)
T ss_dssp EEEEECCCTTCEECSSSCCEEEEC
T ss_pred EEEEEEcCCcCEECCCCEEEEEEc
Confidence 346899999999999999999974
No 23
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=85.96 E-value=0.63 Score=31.17 Aligned_cols=21 Identities=24% Similarity=0.336 Sum_probs=19.2
Q ss_pred EEEcCCCCeeecCCEEEEEEe
Q 029418 164 EWSLKDGDHVHKGLQFGKVSG 184 (193)
Q Consensus 164 e~~v~DGd~V~kGdvIleV~G 184 (193)
++++++|+.|++||.+++++.
T Consensus 21 ~~~v~~G~~V~~G~~L~~l~~ 41 (77)
T 1dcz_A 21 KILVKEGDTVKAGQTVLVLEA 41 (77)
T ss_dssp EECCCTTCEECTTSEEEEEEE
T ss_pred EEEcCCcCEEcCCCEEEEEEc
Confidence 578899999999999999985
No 24
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=85.86 E-value=0.43 Score=35.38 Aligned_cols=24 Identities=25% Similarity=0.566 Sum_probs=20.9
Q ss_pred EEEEEcCCCCeeecCCEEEEEEeC
Q 029418 162 KVEWSLKDGDHVHKGLQFGKVSGK 185 (193)
Q Consensus 162 eve~~v~DGd~V~kGdvIleV~G~ 185 (193)
-++|+++.||.|++||.+++++..
T Consensus 24 v~~~~v~~Gd~V~~G~~L~~iE~~ 47 (108)
T 2dne_A 24 IARWEKKEGDKINEGDLIAEVETD 47 (108)
T ss_dssp EEECSSCTTCEECTTSEEEEEECS
T ss_pred EEEEEcCCCCEecCCCEEEEEEcC
Confidence 468899999999999999999743
No 25
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=85.46 E-value=0.41 Score=32.71 Aligned_cols=24 Identities=8% Similarity=0.072 Sum_probs=20.9
Q ss_pred EEEEEcCCCCeeecCCEEEEEEeC
Q 029418 162 KVEWSLKDGDHVHKGLQFGKVSGK 185 (193)
Q Consensus 162 eve~~v~DGd~V~kGdvIleV~G~ 185 (193)
-.+|++++|+.|++||.+++++..
T Consensus 18 i~~~~v~~Gd~V~~G~~l~~ie~~ 41 (81)
T 1gjx_A 18 IIAVEVNVGDTIAVDDTLITLETD 41 (81)
T ss_dssp EEEECCCSSCBCCSSCCCEEEECS
T ss_pred EEEEEcCCCCEECCCCEEEEEEeC
Confidence 357889999999999999999754
No 26
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=85.34 E-value=0.39 Score=32.72 Aligned_cols=22 Identities=18% Similarity=0.155 Sum_probs=19.7
Q ss_pred EEEcCCCCeeecCCEEEEEEeC
Q 029418 164 EWSLKDGDHVHKGLQFGKVSGK 185 (193)
Q Consensus 164 e~~v~DGd~V~kGdvIleV~G~ 185 (193)
+|++++|+.|++||.+++++..
T Consensus 24 ~~~v~~G~~V~~G~~l~~ie~~ 45 (80)
T 1bdo_A 24 KAFIEVGQKVNVGDTLCIVEAM 45 (80)
T ss_dssp CCSCCTTCEECTTCEEEEEEET
T ss_pred ccccCCcCEECCCCEEEEEEec
Confidence 5789999999999999999864
No 27
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.10 E-value=0.54 Score=33.80 Aligned_cols=33 Identities=18% Similarity=0.484 Sum_probs=27.1
Q ss_pred EEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeecCCEEEEEEe
Q 029418 134 AHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSG 184 (193)
Q Consensus 134 A~IiAKEdGVlAGl~va~~IF~~ldp~leve~~v~DGd~V~kGdvIleV~G 184 (193)
..+.++..|.+. +|++++|+.|++||.+++++.
T Consensus 18 ~~v~a~~~G~v~------------------~~~v~~Gd~V~~Gq~L~~le~ 50 (100)
T 2dn8_A 18 TVLRSPSAGKLT------------------QYTVEDGGHVEAGSSYAEMEV 50 (100)
T ss_dssp TEEECSSCEEEE------------------EESSCTTEEECTTCEEEEEEE
T ss_pred cEEeCCCCEEEE------------------EEEcCCcCEECCCCEEEEEEe
Confidence 457777777654 688999999999999999984
No 28
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=84.35 E-value=0.64 Score=32.48 Aligned_cols=22 Identities=23% Similarity=0.623 Sum_probs=19.8
Q ss_pred EEEEcCCCCeeecCCEEEEEEe
Q 029418 163 VEWSLKDGDHVHKGLQFGKVSG 184 (193)
Q Consensus 163 ve~~v~DGd~V~kGdvIleV~G 184 (193)
.+|++++|+.|++||.+++++.
T Consensus 17 ~~~~v~~Gd~V~~G~~l~~ie~ 38 (84)
T 2kcc_A 17 TQYTVEDGGHVEAGSSYAEMEV 38 (84)
T ss_dssp EEESSCTTEEECTTCEEEEEEC
T ss_pred EEEECCCCCEECCCCEEEEEEe
Confidence 4789999999999999999973
No 29
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=84.18 E-value=0.73 Score=33.42 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=19.9
Q ss_pred EEEcCCCCeeecCCEEEEEEeC
Q 029418 164 EWSLKDGDHVHKGLQFGKVSGK 185 (193)
Q Consensus 164 e~~v~DGd~V~kGdvIleV~G~ 185 (193)
++++++|+.|++||+++++.-+
T Consensus 14 ~v~v~~G~~V~~Gq~L~~ld~~ 35 (116)
T 2k32_A 14 NKLFKAGDKVKKGQTLFIIEQD 35 (116)
T ss_dssp EECSCTTSEECTTCEEEEEECT
T ss_pred EEECCCcCEECCCCEEEEECHH
Confidence 5789999999999999999865
No 30
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus}
Probab=84.07 E-value=8.1 Score=35.36 Aligned_cols=58 Identities=22% Similarity=0.316 Sum_probs=44.9
Q ss_pred CcEEEEEEEeeCCeEEEcHHH--HHHHHHH-----------cCCCcEEEEEcCCCCeeecCCEEEEEEeChh
Q 029418 129 DMEVEAHFLAKEDGIIAGIAL--AEMIFHE-----------VDPSLKVEWSLKDGDHVHKGLQFGKVSGKPR 187 (193)
Q Consensus 129 d~~akA~IiAKEdGVlAGl~v--a~~IF~~-----------ldp~leve~~v~DGd~V~kGdvIleV~G~Ar 187 (193)
..+ +..+.|+++|++..++- +..+... .|+..-++.+++=||+|++||.+++|+.+-.
T Consensus 324 ~a~-~~~v~a~~~G~v~~i~~~~~g~~~~~lGagr~~~~d~id~~~Gi~~~~k~g~~v~~g~~l~~i~~~~~ 394 (423)
T 2dsj_A 324 LAE-EHPLRAEREGVVREVDAYKVGLAVLALGGGRKRKGEPIDHGVGVYLLKKPGDRVERGEALALVYHRRR 394 (423)
T ss_dssp CCE-EEEEECSSCEEEEEECHHHHHHHHHHHTSSCSSTTCCCCTTCEEEESCCTTCEECTTSEEEEEEECSS
T ss_pred CCC-eEEEecCCCeEEEEechHHHHHHHHHcCCCcCcCCCCCCcCcCeeeeccCCCEeCCCCeEEEEEeCCc
Confidence 445 88999999999987542 2223333 3446789999999999999999999998754
No 31
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Probab=83.69 E-value=7.7 Score=35.51 Aligned_cols=59 Identities=20% Similarity=0.236 Sum_probs=45.6
Q ss_pred CcEEEEEEEeeCCeEEEcHHH--HHHHHHH-----------cCCCcEEEEEcCCCCeeecCCEEEEEEeChh
Q 029418 129 DMEVEAHFLAKEDGIIAGIAL--AEMIFHE-----------VDPSLKVEWSLKDGDHVHKGLQFGKVSGKPR 187 (193)
Q Consensus 129 d~~akA~IiAKEdGVlAGl~v--a~~IF~~-----------ldp~leve~~v~DGd~V~kGdvIleV~G~Ar 187 (193)
..+.+..+.|+++|++..++- +-.+... .|+..-++.+++=||+|++||.+++|+.+-.
T Consensus 331 ~~~~~~~v~a~~~G~v~~i~~~~~g~~~~~lGagr~~~~d~~d~~~Gi~~~~k~g~~v~~g~~l~~i~~~~~ 402 (433)
T 1brw_A 331 KAAYTSTVTAAADGYVAEMAADDIGTAAMWLGAGRAKKEDVIDLAVGIVLHKKIGDRVQKGEALATIHSNRP 402 (433)
T ss_dssp CCSEEEEEECSSSEEEEEECHHHHHHHHHHHTTSCSSTTCCCCTTCEEEESCCTTCEECTTCEEEEEEESSS
T ss_pred CCCeEEEEecCCCeEEEEechHHHHHHHHHcCCCcCCCCCCCCcCcCeeEeccCCCEECCCCeEEEEEcCCc
Confidence 345788999999999987542 2223333 3446789999999999999999999998754
No 32
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}
Probab=83.68 E-value=0.33 Score=32.87 Aligned_cols=24 Identities=33% Similarity=0.581 Sum_probs=20.3
Q ss_pred EEEEEcCCCCeeecCCEEEEEEeC
Q 029418 162 KVEWSLKDGDHVHKGLQFGKVSGK 185 (193)
Q Consensus 162 eve~~v~DGd~V~kGdvIleV~G~ 185 (193)
-.+|++++|+.|++||.+++++..
T Consensus 18 v~~~~v~~G~~V~~G~~l~~ie~~ 41 (77)
T 2l5t_A 18 IVRWDVKEGDMVEKDQDLVEVMTD 41 (77)
T ss_dssp EEECSCCTTCEECSCCCCCEEESS
T ss_pred EEEEEeCCCCEECCCCEEEEEEcc
Confidence 357889999999999999999753
No 33
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=83.33 E-value=0.83 Score=35.25 Aligned_cols=23 Identities=17% Similarity=0.427 Sum_probs=19.6
Q ss_pred EEEEEcCCCCeeecCCEEEEEEe
Q 029418 162 KVEWSLKDGDHVHKGLQFGKVSG 184 (193)
Q Consensus 162 eve~~v~DGd~V~kGdvIleV~G 184 (193)
-++|+++.||.|++||.|++++.
T Consensus 44 V~~~~V~~Gd~V~~Gd~L~~iEa 66 (128)
T 1y8o_B 44 VQRWEKKVGEKLSEGDLLAEIET 66 (128)
T ss_dssp EEEECSCTTCEECTTCEEEEEEC
T ss_pred EEEEecCCCCEecCCCEEEEEEc
Confidence 46888999999999999998874
No 34
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=83.12 E-value=0.78 Score=32.97 Aligned_cols=21 Identities=24% Similarity=0.254 Sum_probs=19.0
Q ss_pred EEEcCCCCeeecCCEEEEEEe
Q 029418 164 EWSLKDGDHVHKGLQFGKVSG 184 (193)
Q Consensus 164 e~~v~DGd~V~kGdvIleV~G 184 (193)
+|++++|++|++||.+++++-
T Consensus 27 ~~~v~~Gd~V~~Gq~L~~ie~ 47 (99)
T 2ejm_A 27 KVFVKAGDKVKAGDSLMVMIA 47 (99)
T ss_dssp EECCCTTEEECSSCEEEEEES
T ss_pred EEECCCCCEECCCCEEEEEEc
Confidence 478999999999999999974
No 35
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}
Probab=80.91 E-value=0.72 Score=32.92 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=19.2
Q ss_pred EEEcCCCCeeecCCEEEEEEe
Q 029418 164 EWSLKDGDHVHKGLQFGKVSG 184 (193)
Q Consensus 164 e~~v~DGd~V~kGdvIleV~G 184 (193)
+|++++|+.|++||.+++++.
T Consensus 38 ~~~v~~Gd~V~~Gq~L~~ie~ 58 (94)
T 2jku_A 38 AVSVKPGDAVAEGQEICVIEA 58 (94)
T ss_dssp EECCCTTCCCCTTCCCEEEEC
T ss_pred EEECCCCCEEcCCCEEEEEec
Confidence 688999999999999999974
No 36
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A
Probab=80.33 E-value=5.5 Score=37.00 Aligned_cols=59 Identities=14% Similarity=0.196 Sum_probs=45.2
Q ss_pred CcEEEEEEEeeCCeEEEcHHH-----HHHHH------HHcCCCcEEEEEcCCCCeeecCCEEEEEEeChh
Q 029418 129 DMEVEAHFLAKEDGIIAGIAL-----AEMIF------HEVDPSLKVEWSLKDGDHVHKGLQFGKVSGKPR 187 (193)
Q Consensus 129 d~~akA~IiAKEdGVlAGl~v-----a~~IF------~~ldp~leve~~v~DGd~V~kGdvIleV~G~Ar 187 (193)
..+.+..+.|+++|++..++- +.+.+ ...|+..-++.+++=||+|++||.+++|+.+-.
T Consensus 368 ~a~~~~~v~a~~~G~v~~id~~~~g~~~~~lG~gr~~~~id~~~Gi~l~~k~G~~V~~g~~l~~i~~~~~ 437 (474)
T 1uou_A 368 RAREQEELLAPADGTVELVRALPLALVLHELGAGRAGEPLRLGVGAELLVDVGQRLRRGTPWLRVHRDGP 437 (474)
T ss_dssp CCSEEEEEECSSCEEEEEECHHHHHHHHHHHHC------CCSSCEEEECSCTTCEECTTCEEEEEEESSS
T ss_pred CCCeeEEEECCCCeEEEEecHHHHHHHHHHhCCCCcCCccCCCCceEEEccCCCEECCCCeEEEEEcCCh
Confidence 345788899999999987442 33333 234566889999999999999999999998754
No 37
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus}
Probab=78.18 E-value=5.1 Score=36.86 Aligned_cols=55 Identities=16% Similarity=0.252 Sum_probs=44.2
Q ss_pred CcEEEEEEEeeCCeEEEcHHH--HHHHHHHc-----------CCCcEEEEEcCCCCeeecCCEEEEEE
Q 029418 129 DMEVEAHFLAKEDGIIAGIAL--AEMIFHEV-----------DPSLKVEWSLKDGDHVHKGLQFGKVS 183 (193)
Q Consensus 129 d~~akA~IiAKEdGVlAGl~v--a~~IF~~l-----------dp~leve~~v~DGd~V~kGdvIleV~ 183 (193)
....+..+.|.++|++..++- +..+...+ |+..-++++++=||+|++||.+++|+
T Consensus 334 ~a~~~~~v~a~~~G~v~~id~~~~g~~~~~lGagr~~~~d~id~~~Gi~l~~~~G~~V~~g~~l~~i~ 401 (436)
T 3h5q_A 334 QAQYQIEYKAKKSGYVTELVSNDIGVASMMLGAGRLTKEDDIDLAVGIVLNKKIGDKVEEGESLLTIH 401 (436)
T ss_dssp CCSEEEEEECSSCEEEEEECHHHHHHHHHHTTTSCSSTTCCCCTTCEEEESCCTTCEECTTSEEEEEE
T ss_pred CCCeEEEEecCCCEEEEEechHHHHHHHHHcCCCcCCCCCCCCCCCceEEecCCcCEeCCCCeEEEEe
Confidence 345788999999999988653 33444444 45678999999999999999999999
No 38
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=75.59 E-value=0.29 Score=33.64 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=19.3
Q ss_pred EEEEcCCCCeeecCCEEEEEEe
Q 029418 163 VEWSLKDGDHVHKGLQFGKVSG 184 (193)
Q Consensus 163 ve~~v~DGd~V~kGdvIleV~G 184 (193)
.+|++++||.|++||.+++++.
T Consensus 20 ~~~~v~~Gd~V~~G~~l~~ie~ 41 (80)
T 1pmr_A 20 ATWHKKPGDAVVRDEVLVEIET 41 (80)
T ss_dssp CBCCCCTTCCBSSSCCBCBCCS
T ss_pred EEEECCCcCEECCCCEEEEEEc
Confidence 4788999999999999998864
No 39
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A
Probab=69.85 E-value=6.6 Score=36.03 Aligned_cols=59 Identities=15% Similarity=0.176 Sum_probs=45.6
Q ss_pred CcEEEEEEEeeCCeEEEcHHH--HHHHHHHc-----------CCCcEEEEEcCCCCeeecCCEEEEEEeChh
Q 029418 129 DMEVEAHFLAKEDGIIAGIAL--AEMIFHEV-----------DPSLKVEWSLKDGDHVHKGLQFGKVSGKPR 187 (193)
Q Consensus 129 d~~akA~IiAKEdGVlAGl~v--a~~IF~~l-----------dp~leve~~v~DGd~V~kGdvIleV~G~Ar 187 (193)
..+.+..+.|+++|++..++- +-.+...+ |+..-++.+++=||+|++||.+++|+.+-.
T Consensus 336 ~a~~~~~v~a~~~G~v~~i~~~~~g~~~~~lGagr~~~~d~id~~~Gi~~~~k~g~~v~~g~~l~~i~~~~~ 407 (440)
T 2tpt_A 336 TAMLTKAVYADTEGFVSEMDTRALGMAVVAMGGGRRQASDTIDYSVGFTDMARLGDQVDGQRPLAVIHAKDE 407 (440)
T ss_dssp CCSEEEEECCSSCEEEEEECHHHHHHHHHHHTTSCSSTTCCCCSSCEEESCCCTTCEEBTTBCSEEEEESSH
T ss_pred CCCeEEEEecCCCEEEEEechHHHHHHHHHcCCCcCCCCCCCCcCcCeeEeccCCCEECCCCeEEEEecCCH
Confidence 345788999999999987442 22233333 446789999999999999999999998755
No 40
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=67.01 E-value=3.2 Score=34.81 Aligned_cols=22 Identities=27% Similarity=0.382 Sum_probs=19.7
Q ss_pred EEEcCCCCeeecCCEEEEEEeC
Q 029418 164 EWSLKDGDHVHKGLQFGKVSGK 185 (193)
Q Consensus 164 e~~v~DGd~V~kGdvIleV~G~ 185 (193)
++++++|+.|+|||+++++.-+
T Consensus 44 ~v~v~~G~~V~kG~~L~~ld~~ 65 (341)
T 3fpp_A 44 TLSVAIGDKVKKDQLLGVIDPE 65 (341)
T ss_dssp EECCCTTCEECTTCEEEEECCH
T ss_pred EEEeCCCCEECCCCEEEEEChH
Confidence 6679999999999999999764
No 41
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=66.49 E-value=0.54 Score=32.68 Aligned_cols=21 Identities=29% Similarity=0.237 Sum_probs=16.3
Q ss_pred EEEEcCCCCeeecCCEEEEEE
Q 029418 163 VEWSLKDGDHVHKGLQFGKVS 183 (193)
Q Consensus 163 ve~~v~DGd~V~kGdvIleV~ 183 (193)
.+|++++|++|++||.+++++
T Consensus 14 ~~~~v~~Gd~V~~G~~L~~ie 34 (85)
T 2k7v_A 14 TEVMVKVGDKVAAEQSLITVE 34 (85)
T ss_dssp CSCCCSSSCCCCCSSSCCCCS
T ss_pred EEEEcCCCCEEcCCCEEEEEE
Confidence 356788888888888887765
No 42
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=66.20 E-value=2.2 Score=34.84 Aligned_cols=22 Identities=14% Similarity=0.436 Sum_probs=19.3
Q ss_pred EEEcCCCCeeecCCEEEEEEeC
Q 029418 164 EWSLKDGDHVHKGLQFGKVSGK 185 (193)
Q Consensus 164 e~~v~DGd~V~kGdvIleV~G~ 185 (193)
++++++|+.|++||+++++.-+
T Consensus 35 ~v~v~~G~~V~kGq~L~~ld~~ 56 (277)
T 2f1m_A 35 KRNFKEGSDIEAGVSLYQIDPA 56 (277)
T ss_dssp EECSCTTCEECTTSCSEEECCH
T ss_pred EEEcCCCCEecCCCEEEEECcH
Confidence 4679999999999999999764
No 43
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=65.11 E-value=11 Score=24.51 Aligned_cols=34 Identities=21% Similarity=0.423 Sum_probs=26.5
Q ss_pred EEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeecCCEEEEEE
Q 029418 132 VEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVS 183 (193)
Q Consensus 132 akA~IiAKEdGVlAGl~va~~IF~~ldp~leve~~v~DGd~V~kGdvIleV~ 183 (193)
....+.|..+|++ .+..+++|+.+.+|+.+++++
T Consensus 41 ~~~~i~ap~~G~v------------------~~~~~~~G~~v~~g~~l~~i~ 74 (74)
T 2d5d_A 41 MENEIPSPRDGVV------------------KRILVKEGEAVDTGQPLIELG 74 (74)
T ss_dssp EEEEEECSSSEEE------------------EEECCCTTCEECTTCEEEEEC
T ss_pred ceEEEeCCCCEEE------------------EEEEcCCcCEECCCCEEEEEC
Confidence 4667888888877 234577899999999999873
No 44
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1
Probab=63.58 E-value=4.6 Score=33.36 Aligned_cols=22 Identities=14% Similarity=0.139 Sum_probs=19.3
Q ss_pred EEEEEcCCCCeeecCCEEEEEE
Q 029418 162 KVEWSLKDGDHVHKGLQFGKVS 183 (193)
Q Consensus 162 eve~~v~DGd~V~kGdvIleV~ 183 (193)
-++.++++||+|++||.++++-
T Consensus 117 gF~~~V~~Gd~Vk~Gd~L~~fD 138 (183)
T 3our_B 117 GFTRIAEEGQTVKAGDTVIEFD 138 (183)
T ss_dssp TEEECSCTTCEECTTCEEEEEC
T ss_pred cceEEEeCcCEEcCCCEEEEEC
Confidence 3678899999999999999874
No 45
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=63.13 E-value=3.7 Score=34.69 Aligned_cols=22 Identities=18% Similarity=0.194 Sum_probs=19.5
Q ss_pred EEEcCCCCeeecCCEEEEEEeC
Q 029418 164 EWSLKDGDHVHKGLQFGKVSGK 185 (193)
Q Consensus 164 e~~v~DGd~V~kGdvIleV~G~ 185 (193)
++++++|+.|++||+++++.-+
T Consensus 70 ~v~v~~G~~V~kGq~L~~ld~~ 91 (359)
T 3lnn_A 70 SLNKQLGDEVKAGDVLFTIDSA 91 (359)
T ss_dssp ECCSCTTCEECTTCEEEEEECS
T ss_pred EEEcCCCCEEcCCCEEEEEChH
Confidence 5678999999999999999864
No 46
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=62.57 E-value=5.1 Score=31.84 Aligned_cols=22 Identities=18% Similarity=0.179 Sum_probs=19.3
Q ss_pred EEEEEcCCCCeeecCCEEEEEE
Q 029418 162 KVEWSLKDGDHVHKGLQFGKVS 183 (193)
Q Consensus 162 eve~~v~DGd~V~kGdvIleV~ 183 (193)
-++.+++.||+|++||.++++.
T Consensus 90 gF~~~V~~Gd~V~~G~~L~~~d 111 (154)
T 2gpr_A 90 GFESFVTQDQEVNAGDKLVTVD 111 (154)
T ss_dssp SEEECCCTTCEECTTCEEEEEC
T ss_pred ceEEEEcCCCEEcCCCEEEEEC
Confidence 4678899999999999999873
No 47
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=60.43 E-value=13 Score=24.50 Aligned_cols=34 Identities=26% Similarity=0.364 Sum_probs=26.5
Q ss_pred EEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeecCCEEEEEE
Q 029418 132 VEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVS 183 (193)
Q Consensus 132 akA~IiAKEdGVlAGl~va~~IF~~ldp~leve~~v~DGd~V~kGdvIleV~ 183 (193)
....+.|..+|++. +..+++|+.|.+|+.+++++
T Consensus 44 ~~~~i~Ap~~G~v~------------------~~~~~~G~~v~~G~~l~~i~ 77 (77)
T 1dcz_A 44 METEINAPTDGKVE------------------KVLVKERDAVQGGQGLIKIG 77 (77)
T ss_dssp EEEEEECSSSEEEE------------------EECCCTTCBCCBTSEEEEEC
T ss_pred eeEEEECCCCEEEE------------------EEecCCcCEECCCCEEEEEC
Confidence 46677888888776 24467899999999999873
No 48
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=59.39 E-value=6.2 Score=31.63 Aligned_cols=22 Identities=14% Similarity=0.152 Sum_probs=19.2
Q ss_pred EEEEEcCCCCeeecCCEEEEEE
Q 029418 162 KVEWSLKDGDHVHKGLQFGKVS 183 (193)
Q Consensus 162 eve~~v~DGd~V~kGdvIleV~ 183 (193)
-++.+++.||+|++||.++++.
T Consensus 95 gF~~~V~~Gd~V~~G~~L~~~d 116 (161)
T 1f3z_A 95 GFKRIAEEGQRVKVGDTVIEFD 116 (161)
T ss_dssp TEEECSCTTCEECTTCEEEEEC
T ss_pred ccEEEEeCcCEECCCCEEEEEC
Confidence 4677899999999999999874
No 49
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=55.54 E-value=7.2 Score=37.11 Aligned_cols=22 Identities=18% Similarity=0.380 Sum_probs=20.2
Q ss_pred EEEEcCCCCeeecCCEEEEEEe
Q 029418 163 VEWSLKDGDHVHKGLQFGKVSG 184 (193)
Q Consensus 163 ve~~v~DGd~V~kGdvIleV~G 184 (193)
++|++++||.|++||.+++++.
T Consensus 624 ~~~~v~~Gd~V~~g~~l~~iEa 645 (681)
T 3n6r_A 624 VKVDVEVGQEVQEGQALCTIEA 645 (681)
T ss_dssp EEECCCTTCEECTTCEEEEEEC
T ss_pred EEEEeCCCCEEcCCCEEEEEEe
Confidence 5899999999999999999984
No 50
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=54.79 E-value=3.6 Score=34.83 Aligned_cols=49 Identities=12% Similarity=0.083 Sum_probs=31.3
Q ss_pred CCCcEEEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeecCCEEEEEEeC
Q 029418 127 PLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGK 185 (193)
Q Consensus 127 ~~d~~akA~IiAKEdGVlAGl~va~~IF~~ldp~leve~~v~DGd~V~kGdvIleV~G~ 185 (193)
.....+.+.+.+++.-.+ ....+. .-.++++++|++|++||+++++.-+
T Consensus 18 ~~~v~~~G~v~~~~~~~v---------~~~~~G-~V~~v~v~~G~~V~~Gq~L~~ld~~ 66 (369)
T 4dk0_A 18 EKNVVATGSIESINTVDV---------GAQVSG-KITKLYVKLGQQVKKGDLLAEIDST 66 (369)
T ss_dssp CCCCEEEEEEECSSCCCB---------CCCSCS-BCCEECCCTTSCCCSSCCCEECCCH
T ss_pred eEEEEEeEEEEeeeeEEE---------ecCCCc-EEEEEEECCCCEECCCCEEEEEcCH
Confidence 334556666766554322 112222 2236789999999999999999765
No 51
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=54.59 E-value=5.8 Score=31.79 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=19.2
Q ss_pred EEEEEcCCCCeeecCCEEEEEE
Q 029418 162 KVEWSLKDGDHVHKGLQFGKVS 183 (193)
Q Consensus 162 eve~~v~DGd~V~kGdvIleV~ 183 (193)
-++.+++.||+|++||.++++.
T Consensus 95 gF~~~V~~Gd~V~~G~~L~~~d 116 (162)
T 1ax3_A 95 GFTSFVSEGDRVEPGQKLLEVD 116 (162)
T ss_dssp TEEESCCCCSEECSEEEEEEEC
T ss_pred ccEEEEeCCCEEcCCCEEEEEC
Confidence 4677899999999999999874
No 52
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=54.54 E-value=5 Score=34.52 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=18.9
Q ss_pred EEEcCCCCeeecCCEEEEEEeC
Q 029418 164 EWSLKDGDHVHKGLQFGKVSGK 185 (193)
Q Consensus 164 e~~v~DGd~V~kGdvIleV~G~ 185 (193)
++++++|++|++||+|+++.-+
T Consensus 56 ~v~v~~Gd~V~kGq~L~~ld~~ 77 (369)
T 1vf7_A 56 KRLFKEGSDVKAGQQLYQIDPA 77 (369)
T ss_dssp ECCSCSSEEECTTSEEEEECCH
T ss_pred EEEcCCCCEEcCCCEEEEECcH
Confidence 3578999999999999999754
No 53
>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}
Probab=52.33 E-value=7.4 Score=31.62 Aligned_cols=20 Identities=20% Similarity=0.247 Sum_probs=17.8
Q ss_pred EEEEcCCCCeeecCCEEEEE
Q 029418 163 VEWSLKDGDHVHKGLQFGKV 182 (193)
Q Consensus 163 ve~~v~DGd~V~kGdvIleV 182 (193)
...+++||+.|++|++|++.
T Consensus 62 a~L~V~dG~~V~~G~~laew 81 (190)
T 2auk_A 62 AVLAKGDGEQVAGGETVANW 81 (190)
T ss_dssp CEESSCTTCEECTTCEEEEC
T ss_pred CEEEecCCCEEcCCCEEEEE
Confidence 36789999999999999984
No 54
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=51.63 E-value=8.9 Score=33.72 Aligned_cols=22 Identities=23% Similarity=0.194 Sum_probs=18.5
Q ss_pred EEEc-CCCCeeecCCEEEEEEeC
Q 029418 164 EWSL-KDGDHVHKGLQFGKVSGK 185 (193)
Q Consensus 164 e~~v-~DGd~V~kGdvIleV~G~ 185 (193)
++++ ++|++|+|||+++++.-+
T Consensus 134 ~v~V~~~Gd~VkkGq~L~~ld~~ 156 (413)
T 3ne5_B 134 KVYPLTVGDKVQKGTPLLDLTIP 156 (413)
T ss_dssp EECSCCTTCEECTTCEEEEEECC
T ss_pred EEEeCCCCCEEcCCCEEEEEcCH
Confidence 3456 899999999999999843
No 55
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}
Probab=49.91 E-value=13 Score=24.62 Aligned_cols=19 Identities=16% Similarity=0.261 Sum_probs=16.7
Q ss_pred EEcCCCCeeecCCEEEEEE
Q 029418 165 WSLKDGDHVHKGLQFGKVS 183 (193)
Q Consensus 165 ~~v~DGd~V~kGdvIleV~ 183 (193)
.+++.|+.|.+|+.+++++
T Consensus 58 ~~v~~G~~v~~g~~l~~i~ 76 (77)
T 2l5t_A 58 ILYREGQVVPVGSTLLQID 76 (77)
T ss_dssp ECCCTTCEECSCSEEEEEE
T ss_pred EEeCCcCEECCCCEEEEEE
Confidence 5678999999999999875
No 56
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=49.64 E-value=11 Score=25.19 Aligned_cols=34 Identities=12% Similarity=0.163 Sum_probs=26.3
Q ss_pred EEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeecCCEEEEEE
Q 029418 132 VEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVS 183 (193)
Q Consensus 132 akA~IiAKEdGVlAGl~va~~IF~~ldp~leve~~v~DGd~V~kGdvIleV~ 183 (193)
....+.|..+|++.. .++++|+.|.+|+.+++++
T Consensus 47 ~~~~i~Ap~~G~v~~------------------~~v~~G~~V~~G~~L~~i~ 80 (80)
T 1bdo_A 47 MMNQIEADKSGTVKA------------------ILVESGQPVEFDEPLVVIE 80 (80)
T ss_dssp EEEEEECSSCEEEEE------------------ECSCTTCEECTTCEEEEEC
T ss_pred EEEEEECCCCEEEEE------------------EEcCCCCEECCCCEEEEEC
Confidence 467788888876543 4567899999999999873
No 57
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=48.45 E-value=14 Score=23.96 Aligned_cols=35 Identities=29% Similarity=0.430 Sum_probs=27.2
Q ss_pred EEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeecCCEEEEEEe
Q 029418 132 VEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSG 184 (193)
Q Consensus 132 akA~IiAKEdGVlAGl~va~~IF~~ldp~leve~~v~DGd~V~kGdvIleV~G 184 (193)
....+.|..+|++.- .++++|+.|.+|+.++++..
T Consensus 35 ~~~~i~ap~~G~v~~------------------~~v~~G~~V~~G~~l~~i~~ 69 (72)
T 1z6h_A 35 MEIPIVADRSGIVKE------------------VKKKEGDFVNEGDVLLELSN 69 (72)
T ss_dssp EEEEEECSSCEEEEE------------------ESSCTTCEECTTCEEEEEGG
T ss_pred cEEEEECCCCcEEEE------------------EecCCCCEECCCCEEEEEeC
Confidence 466777888876653 35788999999999999854
No 58
>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}
Probab=48.30 E-value=10 Score=30.77 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=18.9
Q ss_pred EEEEEcCCCCeeecCCEEEEEE
Q 029418 162 KVEWSLKDGDHVHKGLQFGKVS 183 (193)
Q Consensus 162 eve~~v~DGd~V~kGdvIleV~ 183 (193)
.....++||+.|++|++|+++-
T Consensus 165 ga~i~v~dG~~V~~GdvLArip 186 (190)
T 2auk_A 165 KAIVQLEDGVQISSGDTLARIP 186 (190)
T ss_dssp TCEESSCTTCEECTTCEEEEEE
T ss_pred CCEEEEcCCCEEcCCCEEEEcc
Confidence 3466799999999999999985
No 59
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=45.16 E-value=20 Score=23.97 Aligned_cols=37 Identities=16% Similarity=0.257 Sum_probs=27.2
Q ss_pred EEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeecCCEEEEEEeCh
Q 029418 132 VEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGKP 186 (193)
Q Consensus 132 akA~IiAKEdGVlAGl~va~~IF~~ldp~leve~~v~DGd~V~kGdvIleV~G~A 186 (193)
....+.|..+|++. +.+++.|+.|.+|+.++++....
T Consensus 40 ~~~~i~Ap~~G~v~------------------~~~v~~G~~V~~g~~l~~i~~~~ 76 (79)
T 1iyu_A 40 ASMEVPSPKAGVVK------------------SVSVKLGDKLKEGDAIIELEPAA 76 (79)
T ss_dssp CEEEEECSSSSEEE------------------EESCCTTCEEETTSEEEEEECCC
T ss_pred eEEEEECCCCEEEE------------------EEEeCCCCEECCCCEEEEEecCC
Confidence 45666676666443 35678999999999999997643
No 60
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=44.56 E-value=13 Score=37.75 Aligned_cols=22 Identities=14% Similarity=0.116 Sum_probs=20.5
Q ss_pred EEEEcCCCCeeecCCEEEEEEe
Q 029418 163 VEWSLKDGDHVHKGLQFGKVSG 184 (193)
Q Consensus 163 ve~~v~DGd~V~kGdvIleV~G 184 (193)
++|++++||.|++||+|+.++.
T Consensus 1089 ~~~~v~~Gd~V~~G~~l~~iea 1110 (1150)
T 3hbl_A 1089 TEVKVSVGETVKANQPLLITEA 1110 (1150)
T ss_dssp EEECCCTTCEECTTCEEEEEES
T ss_pred EEEEeCCCCEECCCCEEEEEEe
Confidence 6899999999999999999984
No 61
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=43.53 E-value=13 Score=38.13 Aligned_cols=22 Identities=23% Similarity=0.119 Sum_probs=20.2
Q ss_pred EEEEcCCCCeeecCCEEEEEEe
Q 029418 163 VEWSLKDGDHVHKGLQFGKVSG 184 (193)
Q Consensus 163 ve~~v~DGd~V~kGdvIleV~G 184 (193)
++|+++.||.|++||+|+.++.
T Consensus 1179 ~~~~v~~Gd~V~~g~~l~~iEa 1200 (1236)
T 3va7_A 1179 WKPVAAVGDHVEAGDGVIIIEA 1200 (1236)
T ss_dssp EEESSCTTCEECSSCEEEEEEE
T ss_pred EEEEcCCCCEECCCCEEEEEEe
Confidence 4799999999999999999984
No 62
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=41.67 E-value=16 Score=24.47 Aligned_cols=21 Identities=33% Similarity=0.498 Sum_probs=17.8
Q ss_pred EEEcCCCCeeecCCEEEEEEe
Q 029418 164 EWSLKDGDHVHKGLQFGKVSG 184 (193)
Q Consensus 164 e~~v~DGd~V~kGdvIleV~G 184 (193)
+.++++|+.|.+|+.++++..
T Consensus 57 ~~~v~~G~~v~~g~~l~~i~~ 77 (79)
T 1ghj_A 57 EIVKNEGDTVLSGELLGKLTE 77 (79)
T ss_dssp EESSCTTCEECTTCEEEEECC
T ss_pred EEEcCCcCEECCCCEEEEEec
Confidence 356789999999999999864
No 63
>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A
Probab=40.07 E-value=45 Score=25.75 Aligned_cols=41 Identities=17% Similarity=0.171 Sum_probs=26.9
Q ss_pred CCeEEEcH-HHHHHHHHHcCCCcEEEEEcCCCCeeecCCEEEEEEe
Q 029418 140 EDGIIAGI-ALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSG 184 (193)
Q Consensus 140 EdGVlAGl-~va~~IF~~ldp~leve~~v~DGd~V~kGdvIleV~G 184 (193)
.+-+.-|+ +++. ..+|. +...-..+.|+.|++|+.++.|+.
T Consensus 29 ~~~~~vGit~~a~---~~lG~-i~~V~lp~vGd~V~~Gd~l~~VEs 70 (136)
T 1zko_A 29 DKVATVGITNHAQ---EQLGD-VVYVDLPEVGREVKKGEVVASIES 70 (136)
T ss_dssp TTEEEEEECHHHH---HHHCS-EEEEECCCTTCEECTTCEEEEEEE
T ss_pred CCEEEEeeEhhhc---ccCCC-cEEEEecCCCCEEeCCCEEEEEEE
Confidence 34455774 4444 44553 322222599999999999999985
No 64
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=39.84 E-value=6.1 Score=37.57 Aligned_cols=24 Identities=17% Similarity=0.178 Sum_probs=0.0
Q ss_pred cEEEEEcCCCCeeecCCEEEEEEe
Q 029418 161 LKVEWSLKDGDHVHKGLQFGKVSG 184 (193)
Q Consensus 161 leve~~v~DGd~V~kGdvIleV~G 184 (193)
.-++|++++||.|++||.+++++-
T Consensus 612 ~v~~~~v~~Gd~V~~g~~l~~iEa 635 (675)
T 3u9t_A 612 SIVRVLVEPGQTVEAGATLVVLEA 635 (675)
T ss_dssp ------------------------
T ss_pred EEEEEEeCCCCEEcCCCEEEEEEe
Confidence 346899999999999999999874
No 65
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=38.05 E-value=25 Score=24.14 Aligned_cols=23 Identities=17% Similarity=0.225 Sum_probs=19.0
Q ss_pred EEEcCCCC-eeecCCEEEEEEeCh
Q 029418 164 EWSLKDGD-HVHKGLQFGKVSGKP 186 (193)
Q Consensus 164 e~~v~DGd-~V~kGdvIleV~G~A 186 (193)
+.++++|+ .|..|+.++++.-..
T Consensus 61 ~~~v~~G~~~V~~G~~l~~i~~~~ 84 (87)
T 3crk_C 61 KILVPEGTRDVPLGTPLCIIVEKE 84 (87)
T ss_dssp EESSCTTCCCEETTCEEEEEESSS
T ss_pred EEEECCCCeEECCCCEEEEEEccc
Confidence 36678999 899999999997543
No 66
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=37.54 E-value=26 Score=24.61 Aligned_cols=23 Identities=9% Similarity=0.023 Sum_probs=19.4
Q ss_pred EEEcCCCCeeecCCEEEEEEeCh
Q 029418 164 EWSLKDGDHVHKGLQFGKVSGKP 186 (193)
Q Consensus 164 e~~v~DGd~V~kGdvIleV~G~A 186 (193)
+.++++|+.|.+|+.|++++...
T Consensus 60 ~i~v~~G~~V~~G~~l~~i~~~~ 82 (93)
T 1k8m_A 60 KLYYNLDDIAYVGKPLVDIETEA 82 (93)
T ss_dssp EECCCSSCEECTTSEEEEEECSC
T ss_pred EEEcCCCCEeCCCCEEEEEecCC
Confidence 36778999999999999998544
No 67
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=37.30 E-value=24 Score=24.04 Aligned_cols=37 Identities=19% Similarity=0.208 Sum_probs=28.8
Q ss_pred EEEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeecCCEEEEEEeC
Q 029418 131 EVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGK 185 (193)
Q Consensus 131 ~akA~IiAKEdGVlAGl~va~~IF~~ldp~leve~~v~DGd~V~kGdvIleV~G~ 185 (193)
+....+.|..+|++ .+.+++.|+.|.+|+.++++...
T Consensus 37 k~~~~i~Ap~~G~V------------------~~~~v~~G~~V~~G~~l~~i~~~ 73 (85)
T 2k7v_A 37 KASMEVPAPFAGVV------------------KELKVNVGDKVKTGSLIMIFEVE 73 (85)
T ss_dssp CSEEEEECSSCBCC------------------CEECSCTTCCBCTTSEEEEEECC
T ss_pred ccEEEEECCCCEEE------------------EEEEeCCCCEECCCCEEEEEEcC
Confidence 45777888887753 23567899999999999999854
No 68
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}
Probab=36.59 E-value=22 Score=30.75 Aligned_cols=23 Identities=22% Similarity=0.114 Sum_probs=19.4
Q ss_pred EEEEcCCCCeeecCCEEEEEEeC
Q 029418 163 VEWSLKDGDHVHKGLQFGKVSGK 185 (193)
Q Consensus 163 ve~~v~DGd~V~kGdvIleV~G~ 185 (193)
++..+++|+.|+|||+|+++.-+
T Consensus 278 ~~~~~~~g~~V~~G~~La~i~d~ 300 (354)
T 3cdx_A 278 FEPTHYVGEEVRTGETAGWIHFV 300 (354)
T ss_dssp EEESCCTTCEECTTSEEEEEECT
T ss_pred EEEeCCCCCEeCCCCEEEEEECC
Confidence 45567899999999999999854
No 69
>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}
Probab=36.20 E-value=23 Score=30.57 Aligned_cols=21 Identities=19% Similarity=0.229 Sum_probs=18.1
Q ss_pred EEcCCCCeeecCCEEEEEEeC
Q 029418 165 WSLKDGDHVHKGLQFGKVSGK 185 (193)
Q Consensus 165 ~~v~DGd~V~kGdvIleV~G~ 185 (193)
.+++-|++|+|||+|++|.-+
T Consensus 270 ~~v~~Gd~V~~G~~la~I~dp 290 (331)
T 3na6_A 270 IMIDLGEPVQEGDLVARVWSP 290 (331)
T ss_dssp ESSCTTCEECTTCEEEEEECS
T ss_pred EcCCCCCEEcCCCEEEEEEcC
Confidence 357799999999999999864
No 70
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Probab=35.20 E-value=8 Score=35.01 Aligned_cols=73 Identities=14% Similarity=0.090 Sum_probs=0.0
Q ss_pred CcCCCCCChhhHHHHHHHHHhhhcCCCCCccCc---cccCCCcEEEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEc
Q 029418 91 AIKLPSHPTYDLKGVVKLALAEDAGDRGDVTCM---ATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSL 167 (193)
Q Consensus 91 ~~~~p~~p~~~L~~~I~~aL~EDig~~GDlTT~---ali~~d~~akA~IiAKEdGVlAGl~va~~IF~~ldp~leve~~v 167 (193)
.|++|.+....-+-.|-.|+.+. ||--.. .+.....+.+..+.|..+|++. ++++
T Consensus 4 ~i~mP~lg~~~~eg~i~~w~v~~----Gd~V~~gd~l~~vEt~K~~~~i~ap~~G~v~------------------~i~v 61 (428)
T 3dva_I 4 EFKLPDIGEGIHEGEIVKWFVKP----GDEVNEDDVLCEVQNDKAVVEIPSPVKGKVL------------------EILV 61 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eEEcCCCCCCCccEEEEEEEcCC----CCEECCCCEEEEEEeCCeeEEEecCCCeEEE------------------EEEe
Confidence 57888888766667777777654 322111 1112334556666666666543 3456
Q ss_pred CCCCeeecCCEEEEEEeC
Q 029418 168 KDGDHVHKGLQFGKVSGK 185 (193)
Q Consensus 168 ~DGd~V~kGdvIleV~G~ 185 (193)
++|+.|..|+.|+.+...
T Consensus 62 ~~G~~V~~G~~l~~i~~~ 79 (428)
T 3dva_I 62 PEGTVATVGQTLITLDAP 79 (428)
T ss_dssp ------------------
T ss_pred CCCCEeCCCCEEEEEecC
Confidence 789999999999988643
No 71
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=34.58 E-value=19 Score=32.01 Aligned_cols=20 Identities=25% Similarity=0.458 Sum_probs=18.0
Q ss_pred EEEEEcCCCCeeecCCEEEE
Q 029418 162 KVEWSLKDGDHVHKGLQFGK 181 (193)
Q Consensus 162 eve~~v~DGd~V~kGdvIle 181 (193)
-...+++||+.|++|++|++
T Consensus 60 ga~l~v~~g~~V~~g~~la~ 79 (352)
T 2xhc_A 60 KAKLHVNNGKDVNKGDLIAE 79 (352)
T ss_dssp TCEESCCTTCEECTTCEEEE
T ss_pred CCEEEecCCCEEcCCCEEEE
Confidence 45789999999999999998
No 72
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=34.44 E-value=16 Score=35.42 Aligned_cols=23 Identities=22% Similarity=0.328 Sum_probs=20.6
Q ss_pred EEEEEcCCCCeeecCCEEEEEEe
Q 029418 162 KVEWSLKDGDHVHKGLQFGKVSG 184 (193)
Q Consensus 162 eve~~v~DGd~V~kGdvIleV~G 184 (193)
-++|.+++|+.|++||.+++++.
T Consensus 660 V~~v~V~~Gd~V~~Gq~L~~iEa 682 (718)
T 3bg3_A 660 VIDIKVVAGAKVAKGQPLCVLSA 682 (718)
T ss_dssp EEEECSCTTCCBCTTCCCEEEES
T ss_pred EEEEEeCCCCeeCCCCEEEEEec
Confidence 35899999999999999999973
No 73
>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*
Probab=32.28 E-value=28 Score=30.66 Aligned_cols=21 Identities=14% Similarity=-0.016 Sum_probs=18.5
Q ss_pred EEEcCCCCeeecCCEEEEEEe
Q 029418 164 EWSLKDGDHVHKGLQFGKVSG 184 (193)
Q Consensus 164 e~~v~DGd~V~kGdvIleV~G 184 (193)
+..++=|++|+|||+|++|.-
T Consensus 302 ~~~v~lGd~V~kG~~la~I~d 322 (368)
T 3fmc_A 302 EYLGKVGVPMKATDPLVNLLR 322 (368)
T ss_dssp EECSCTTCCBCTTCEEEEEEC
T ss_pred EEeCCCCCEeCCCCEEEEEEc
Confidence 456789999999999999986
No 74
>3it5_A Protease LASA; metallopeptidase, beta-protein, cell membrane, cell out membrane, hydrolase, membrane, metal-binding; 2.00A {Pseudomonas aeruginosa} PDB: 3it7_A*
Probab=29.59 E-value=28 Score=27.88 Aligned_cols=17 Identities=18% Similarity=0.430 Sum_probs=15.7
Q ss_pred EcCCCCeeecCCEEEEE
Q 029418 166 SLKDGDHVHKGLQFGKV 182 (193)
Q Consensus 166 ~v~DGd~V~kGdvIleV 182 (193)
.++.|++|++||+|.++
T Consensus 86 ~V~~G~~V~~Gq~IG~v 102 (182)
T 3it5_A 86 QVSNGQQVSADTKLGVY 102 (182)
T ss_dssp CCCTTCEECTTCEEEEE
T ss_pred ccCCCCEEcCCCEEEee
Confidence 48899999999999998
No 75
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=29.26 E-value=27 Score=35.45 Aligned_cols=23 Identities=13% Similarity=0.131 Sum_probs=17.5
Q ss_pred EEEEEcCCCCeeecCCEEEEEEe
Q 029418 162 KVEWSLKDGDHVHKGLQFGKVSG 184 (193)
Q Consensus 162 eve~~v~DGd~V~kGdvIleV~G 184 (193)
-++|.++.||.|++||++++++.
T Consensus 1106 v~~~~v~~Gd~V~~G~~l~~iEa 1128 (1165)
T 2qf7_A 1106 ISRVFVSSGQAVNAGDVLVSIEA 1128 (1165)
T ss_dssp EEEECCSSCCCC---CEEEEEEC
T ss_pred EEEEEcCCcCEeCCCCEEEEEEc
Confidence 35899999999999999999973
No 76
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.52 E-value=32 Score=24.46 Aligned_cols=39 Identities=21% Similarity=0.349 Sum_probs=28.9
Q ss_pred EEEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCee-ecCCEEEEEEeChh
Q 029418 131 EVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHV-HKGLQFGKVSGKPR 187 (193)
Q Consensus 131 ~akA~IiAKEdGVlAGl~va~~IF~~ldp~leve~~v~DGd~V-~kGdvIleV~G~Ar 187 (193)
+....+.|..+|++. +.++++|+.| ..|+.|+++.-...
T Consensus 48 K~~~~i~Ap~~G~v~------------------~i~v~~G~~Vv~~G~~l~~i~~~~~ 87 (98)
T 2dnc_A 48 KAVVTLDASDDGILA------------------KIVVEEGSKNIRLGSLIGLIVEEGE 87 (98)
T ss_dssp SCEEEEECSSCEEEE------------------ECSSCTTCCCEESSCEEEEEECTTS
T ss_pred cceeEEeCCCCEEEE------------------EEEeCCCCEEcCCCCEEEEEecCCC
Confidence 356667777777553 3457899998 99999999986544
No 77
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=25.34 E-value=58 Score=24.70 Aligned_cols=40 Identities=18% Similarity=0.295 Sum_probs=28.9
Q ss_pred EEEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCC-eeecCCEEEEEEeChhh
Q 029418 131 EVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGD-HVHKGLQFGKVSGKPRK 188 (193)
Q Consensus 131 ~akA~IiAKEdGVlAGl~va~~IF~~ldp~leve~~v~DGd-~V~kGdvIleV~G~Ars 188 (193)
+....+.|..+|++ .++++++|+ .|..|+.|+++.-....
T Consensus 68 K~~~~I~Ap~~G~V------------------~~i~v~~Gd~~V~~G~~L~~i~~~~~~ 108 (128)
T 1y8o_B 68 KATIGFEVQEEGYL------------------AKILVPEGTRDVPLGTPLCIIVEKEAD 108 (128)
T ss_dssp SCEEEEECCSCEEE------------------EEESSCTTCCSEETTCEEEEEESSGGG
T ss_pred cceeEEeCCCCeEE------------------EEEEeCCCCeeecCCCEEEEEecCccc
Confidence 34556666666644 246688998 89999999999876544
No 78
>3os4_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel; HET: MSE; 1.60A {Yersinia pestis}
Probab=24.27 E-value=16 Score=33.19 Aligned_cols=61 Identities=16% Similarity=0.150 Sum_probs=39.0
Q ss_pred CcEEEEEEEeeCC----eEEEcHHHHHHHHHHcCC-CcEEEE--------------E---cCCCCee----ecCCEEEEE
Q 029418 129 DMEVEAHFLAKED----GIIAGIALAEMIFHEVDP-SLKVEW--------------S---LKDGDHV----HKGLQFGKV 182 (193)
Q Consensus 129 d~~akA~IiAKEd----GVlAGl~va~~IF~~ldp-~leve~--------------~---v~DGd~V----~kGdvIleV 182 (193)
+.+++..++.|.. +++||++.+-..++.+.= +=++++ + .=+|+.+ .+|+.+++|
T Consensus 32 ~~~v~fe~f~R~~~~~~~~~agl~~~l~~l~~l~ft~~ei~yL~~~~~~~~~fl~yL~~frf~~~~~~~~e~~~ep~l~I 111 (407)
T 3os4_A 32 HITVAAEFRCRSDELLGVYADEIRHQVTLMGQLALTSDEFIYLSSLPFFQDDYLHWLRDFRFKPEQVSVAVHDGKLDIRI 111 (407)
T ss_dssp TCEEEEEEEECSSCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHTSSSCCHHHHHHHHHCCCCGGGEEEEEETTEEEEEE
T ss_pred CCeEEEEEEEcCCCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHhCCCCCHHHHHHHHhCCCCceEEEEecCCCcEEEEE
Confidence 4467788888876 778888877776665420 000111 1 1146655 799999999
Q ss_pred EeChhhh
Q 029418 183 SGKPRKI 189 (193)
Q Consensus 183 ~G~ArsL 189 (193)
+|+....
T Consensus 112 ~Gp~~e~ 118 (407)
T 3os4_A 112 AGLWCEV 118 (407)
T ss_dssp EEEHHHH
T ss_pred EEEHHHH
Confidence 9997653
No 79
>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*
Probab=23.65 E-value=1.1e+02 Score=23.32 Aligned_cols=41 Identities=22% Similarity=0.171 Sum_probs=28.2
Q ss_pred CeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeecCCEEEEEEe
Q 029418 141 DGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSG 184 (193)
Q Consensus 141 dGVlAGl~va~~IF~~ldp~leve~~v~DGd~V~kGdvIleV~G 184 (193)
+.+.-|+... ....+|. +..--..+.|+.|++|+.+++|+.
T Consensus 21 ~~~~vGitd~--a~~~lG~-i~~v~lp~~G~~V~~g~~l~~vEs 61 (131)
T 1hpc_A 21 SVATIGITDH--AQDHLGE-VVFVELPEPGVSVTKGKGFGAVES 61 (131)
T ss_dssp TEEEEEECHH--HHHHHCS-EEEEECCCTTCEECBTSEEEEEEE
T ss_pred CEEEEEEehh--hcccCCC-ceEEEecCCCCEEeCCCEEEEEEe
Confidence 4455776443 2456764 433333599999999999999985
No 80
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=23.60 E-value=46 Score=24.17 Aligned_cols=40 Identities=23% Similarity=0.317 Sum_probs=28.7
Q ss_pred EEEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCC-eeecCCEEEEEEeChhh
Q 029418 131 EVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGD-HVHKGLQFGKVSGKPRK 188 (193)
Q Consensus 131 ~akA~IiAKEdGVlAGl~va~~IF~~ldp~leve~~v~DGd-~V~kGdvIleV~G~Ars 188 (193)
+....+.|..+|++. +.++++|+ .|..|+.|+++.-....
T Consensus 48 K~~~~i~Ap~~G~V~------------------~i~v~~G~~~V~~G~~l~~i~~~~~~ 88 (108)
T 2dne_A 48 KATVGFESLEECYMA------------------KILVAEGTRDVPIGAIICITVGKPED 88 (108)
T ss_dssp SCEEEEECSSSEEEE------------------ECSSCTTCCSEETTCEEEEEESCHHH
T ss_pred cceeEEeCCCCEEEE------------------EEEeCCCCeeecCCCEEEEEecCccc
Confidence 345666676676543 25578998 89999999999865443
No 81
>2hsi_A Putative peptidase M23; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.90A {Pseudomonas aeruginosa PAO1}
Probab=23.57 E-value=37 Score=29.11 Aligned_cols=18 Identities=39% Similarity=0.543 Sum_probs=16.1
Q ss_pred EEcCCCCeeecCCEEEEE
Q 029418 165 WSLKDGDHVHKGLQFGKV 182 (193)
Q Consensus 165 ~~v~DGd~V~kGdvIleV 182 (193)
..++.||+|++||+|+++
T Consensus 232 i~V~~G~~V~~Gq~IG~v 249 (282)
T 2hsi_A 232 IDVKLGQQVPRGGVLGKV 249 (282)
T ss_dssp ECSCTTCEECTTCEEEEC
T ss_pred cccCCcCEECCCCEEEEE
Confidence 358899999999999986
No 82
>2wfu_B Probable insulin-like peptide 5 B chain; cleavage on PAIR of basic residues, signaling protein; 1.85A {Drosophila melanogaster} PDB: 2wfv_B
Probab=23.41 E-value=41 Score=19.49 Aligned_cols=16 Identities=31% Similarity=0.632 Sum_probs=13.3
Q ss_pred ccCchhHHHHHHHHHh
Q 029418 27 SSHSCGQVIIEALLSA 42 (193)
Q Consensus 27 ~~~~~~~~~~~~~~~~ 42 (193)
|.|-||.-+.|||-..
T Consensus 2 ~~~lCG~~L~eaL~~v 17 (26)
T 2wfu_B 2 SLRACGPALMDMLRVA 17 (26)
T ss_dssp CBCCCHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHH
Confidence 5689999999998653
No 83
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=23.25 E-value=56 Score=28.55 Aligned_cols=37 Identities=24% Similarity=0.417 Sum_probs=30.6
Q ss_pred EEEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeecCCEEEEEEeC
Q 029418 131 EVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGK 185 (193)
Q Consensus 131 ~akA~IiAKEdGVlAGl~va~~IF~~ldp~leve~~v~DGd~V~kGdvIleV~G~ 185 (193)
..+..|.|..+|++. +..++.|+.|.+|+.+++|...
T Consensus 205 ~~~~~I~AP~~G~V~------------------~~~v~~G~~V~~G~~l~~I~~~ 241 (413)
T 3ne5_B 205 QTRFTLKAPIDGVIT------------------AFDLRAGMNIAKDNVVAKIQGM 241 (413)
T ss_dssp CCEEEEECSSSEEEE------------------ECCCCTTCEECTTSCSEEEEEE
T ss_pred cccEEEEcCCCeEEE------------------EEEcCCCCEECCCCcEEEEeCC
Confidence 456789999999997 3457799999999999999754
No 84
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human, dihydrolipoamide dehydrogenase, dihydrolipoyl dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Probab=22.14 E-value=19 Score=30.01 Aligned_cols=71 Identities=20% Similarity=0.267 Sum_probs=0.0
Q ss_pred CcCCCCCChhhHHHHHHHHHhhhcCCCCCccCc---cccCCCcEEEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEc
Q 029418 91 AIKLPSHPTYDLKGVVKLALAEDAGDRGDVTCM---ATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSL 167 (193)
Q Consensus 91 ~~~~p~~p~~~L~~~I~~aL~EDig~~GDlTT~---ali~~d~~akA~IiAKEdGVlAGl~va~~IF~~ldp~leve~~v 167 (193)
.|++|.+......-.|..|+.+. ||--.. .+.....+....|.+..+|++. ++++
T Consensus 5 ei~mP~lGesm~eG~I~~w~vk~----Gd~V~~Gd~L~~iEtdK~~~ei~Ap~~G~v~------------------~i~v 62 (229)
T 1zy8_K 5 KILMPSLSPTMEEGNIVKWLKKE----GEAVSAGDALCEIETDKAVVTLDASDDGILA------------------KIVV 62 (229)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eEecCCCCCCCCcEEEEEEecCC----CCEeCCCCEEEEEecCCceeEEecCCCeEEE------------------EEEe
Confidence 57888888777777788887763 332111 0112223445555555555432 2456
Q ss_pred CCCCe-eecCCEEEEEE
Q 029418 168 KDGDH-VHKGLQFGKVS 183 (193)
Q Consensus 168 ~DGd~-V~kGdvIleV~ 183 (193)
++|+. |..|+.|+++.
T Consensus 63 ~~G~~~V~~G~~l~~i~ 79 (229)
T 1zy8_K 63 EEGSKNIRLGSLIGLIV 79 (229)
T ss_dssp -----------------
T ss_pred cCCCeeecCCCEEEEEe
Confidence 67886 88888888775
No 85
>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*
Probab=21.81 E-value=90 Score=23.61 Aligned_cols=40 Identities=13% Similarity=-0.005 Sum_probs=27.5
Q ss_pred EEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeecCCEEEEEEeC
Q 029418 143 IIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGK 185 (193)
Q Consensus 143 VlAGl~va~~IF~~ldp~leve~~v~DGd~V~kGdvIleV~G~ 185 (193)
+.-|+... ....+|. +..--..+.|+.|++|+.+++|+..
T Consensus 24 ~~vGitd~--a~~~lG~-i~~v~lp~vG~~V~~g~~l~~vEs~ 63 (128)
T 3a7l_A 24 YTVGITEH--AQELLGD-MVFVDLPEVGATVSAGDDCAVAESV 63 (128)
T ss_dssp EEEEECHH--HHHHHCS-EEEEECCCTTCEECTTCEEEEEEES
T ss_pred EEEEEehH--HhccCCc-eEEEEecCCCCEEeCCCEEEEEEec
Confidence 55676433 2456664 4333346899999999999999854
No 86
>3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus} SCOP: b.84.1.0 PDB: 2edg_A
Probab=21.79 E-value=96 Score=23.65 Aligned_cols=42 Identities=14% Similarity=0.086 Sum_probs=28.2
Q ss_pred CeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeecCCEEEEEEeC
Q 029418 141 DGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGK 185 (193)
Q Consensus 141 dGVlAGl~va~~IF~~ldp~leve~~v~DGd~V~kGdvIleV~G~ 185 (193)
+-+.-|+.-..+ +.+|. +.+--+-+-|+.|++|+.++.|+..
T Consensus 17 ~~~~vGITd~Aq--~~lGd-iv~velp~vG~~v~~G~~~~~VES~ 58 (125)
T 3klr_A 17 GVGTVGISNFAQ--EALGD-VVYCSLPEVGTKLNKQEEFGALESV 58 (125)
T ss_dssp TEEEEEECHHHH--HHHCS-EEEEECCCTTCEECTTCEEEEEEES
T ss_pred CEEEEeeCHHHH--hhCCC-eEEEEeCCCCCEEcCCCEEEEEEEc
Confidence 444567654442 45663 4444455889999999999999853
No 87
>1qwy_A Peptidoglycan hydrolase; LYTM lysostaphin metalloprotease asparagine switch; 1.30A {Staphylococcus aureus subsp} SCOP: b.84.3.2 PDB: 2b0p_A 2b13_A* 2b44_A
Probab=21.51 E-value=43 Score=29.28 Aligned_cols=18 Identities=28% Similarity=0.401 Sum_probs=16.2
Q ss_pred EEcCCCCeeecCCEEEEE
Q 029418 165 WSLKDGDHVHKGLQFGKV 182 (193)
Q Consensus 165 ~~v~DGd~V~kGdvIleV 182 (193)
+.++.|++|++||+|+.+
T Consensus 239 i~Vk~Gq~V~~GqvIG~v 256 (291)
T 1qwy_A 239 LTVSAGDKVKAGDQIAYS 256 (291)
T ss_dssp ECCCTTCEECTTCEEEEC
T ss_pred cccCCcCEECCCCEEEEE
Confidence 468899999999999987
No 88
>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1
Probab=21.24 E-value=1.3e+02 Score=22.70 Aligned_cols=42 Identities=19% Similarity=0.126 Sum_probs=28.5
Q ss_pred CeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeecCCEEEEEEeC
Q 029418 141 DGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGK 185 (193)
Q Consensus 141 dGVlAGl~va~~IF~~ldp~leve~~v~DGd~V~kGdvIleV~G~ 185 (193)
+.+.-|+... ....+|. +..--..+-|+.|++|+.+++|+..
T Consensus 21 ~~~~vGit~~--a~~~lG~-i~~v~lp~vG~~V~~g~~l~~vEs~ 62 (128)
T 1onl_A 21 DTVLVGITDY--AQDALGD-VVYVELPEVGRVVEKGEAVAVVESV 62 (128)
T ss_dssp TEEEEEECHH--HHHHHCS-EEEEECBCTTCEECTTCEEEEEEES
T ss_pred CEEEEEeehH--HhhcCCC-ceEEEecCCCCEEeCCCEEEEEEEc
Confidence 4455676433 2356664 4333346999999999999999853
No 89
>3tuf_B Stage II sporulation protein Q; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_B
Probab=20.63 E-value=44 Score=28.15 Aligned_cols=20 Identities=35% Similarity=0.534 Sum_probs=17.1
Q ss_pred EEEcCCCCeeecCCEEEEEE
Q 029418 164 EWSLKDGDHVHKGLQFGKVS 183 (193)
Q Consensus 164 e~~v~DGd~V~kGdvIleV~ 183 (193)
.+.++.|++|++|++|+++-
T Consensus 134 ~i~Vk~Gd~V~~Gq~IG~vG 153 (245)
T 3tuf_B 134 EVSVEQGDKVKQNQVIGKSG 153 (245)
T ss_dssp EESCCTTCEECTTCEEEECB
T ss_pred ccccCCCCEECCCCEEEEeC
Confidence 34588999999999999884
No 90
>3tzu_A GCVH, glycine cleavage system H protein 1; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Mycobacterium marinum}
Probab=20.08 E-value=1.1e+02 Score=23.78 Aligned_cols=39 Identities=21% Similarity=0.260 Sum_probs=27.1
Q ss_pred EEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeecCCEEEEEEe
Q 029418 143 IIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSG 184 (193)
Q Consensus 143 VlAGl~va~~IF~~ldp~leve~~v~DGd~V~kGdvIleV~G 184 (193)
+.-|+.-.. -+.+|. +.+--+-+-|++|++|+.++.|+.
T Consensus 36 ~~VGITd~A--q~~lGd-iv~VelP~vG~~v~~G~~~~~VES 74 (137)
T 3tzu_A 36 VRVGITSVA--VEALGD-LVFVQLPEVGETVSAGESCGEVES 74 (137)
T ss_dssp EEEEECHHH--HHHHCS-EEEEECCCTTCEECTTSEEEEEEE
T ss_pred EEEeeCHHH--HhhcCC-eEEEEcCCCCCEEeCCCEEEEEEe
Confidence 456754443 245553 544445689999999999999986
No 91
>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis}
Probab=20.06 E-value=84 Score=25.62 Aligned_cols=25 Identities=24% Similarity=0.226 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCeeecCCEEEEEEe
Q 029418 160 SLKVEWSLKDGDHVHKGLQFGKVSG 184 (193)
Q Consensus 160 ~leve~~v~DGd~V~kGdvIleV~G 184 (193)
+.++...+..|++|.+|+.++.+.-
T Consensus 109 G~~V~~i~~~G~rV~kgd~lA~i~T 133 (169)
T 3d4r_A 109 GYKVYPIMDFGFRVLKGYRLATLES 133 (169)
T ss_dssp SSEEEECCCCSEEECTTCEEEEEEC
T ss_pred ceEEEEEcCcCcEeccCCeEEEEEe
Confidence 4788999999999999999998863
Done!