RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 029418
(193 letters)
>gnl|CDD|178318 PLN02716, PLN02716, nicotinate-nucleotide diphosphorylase
(carboxylating).
Length = 308
Score = 179 bits (456), Expect = 3e-56
Identities = 73/104 (70%), Positives = 85/104 (81%)
Query: 86 GFESPAIKLPSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIA 145
+ AI PSHPTYD++ V+KLALAEDAGDRGDVTC+ATIP DME EA FLAK DG++A
Sbjct: 3 AEMAMAIPPPSHPTYDIEAVIKLALAEDAGDRGDVTCLATIPGDMEAEATFLAKADGVLA 62
Query: 146 GIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGKPRKI 189
GIALA+M+F EVDPSLKVEW+ DGD VHKGL+FGKV+G I
Sbjct: 63 GIALADMVFEEVDPSLKVEWAAIDGDFVHKGLKFGKVTGPAHSI 106
>gnl|CDD|238806 cd01572, QPRTase, Quinolinate phosphoribosyl transferase (QAPRTase
or QPRTase), also called nicotinate-nucleotide
pyrophosphorylase, is involved in the de novo synthesis
of NAD in both prokaryotes and eukaryotes. It catalyses
the reaction of quinolinic acid (QA) with
5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence
of Mg2+ to produce nicotinic acid mononucleotide (NAMN),
pyrophosphate and carbon dioxide. QPRTase functions as a
homodimer with two active sites, each formed by the
C-terminal region of one subunit and the N-terminal
region of the other.
Length = 268
Score = 106 bits (268), Expect = 1e-28
Identities = 41/84 (48%), Positives = 55/84 (65%), Gaps = 1/84 (1%)
Query: 106 VKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEW 165
V+LALAED G RGD+T A IP D EA +AKE+G++AG+ +AE +F +DP ++VEW
Sbjct: 4 VRLALAEDLG-RGDITSEAIIPPDARAEARLIAKEEGVLAGLPVAEEVFELLDPGIEVEW 62
Query: 166 SLKDGDHVHKGLQFGKVSGKPRKI 189
+KDGD V G V G R +
Sbjct: 63 LVKDGDRVEPGQVLATVEGPARSL 86
>gnl|CDD|238802 cd01568, QPRTase_NadC, Quinolinate phosphoribosyl transferase
(QAPRTase or QPRTase), also called nicotinate-nucleotide
pyrophosphorylase, is involved in the de novo synthesis
of NAD in both prokaryotes and eukaryotes. It catalyses
the reaction of quinolinic acid (QA) with
5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence
of Mg2+ to produce nicotinic acid mononucleotide (NAMN),
pyrophosphate and carbon dioxide. QPRTase functions as a
homodimer with two active sites, each formed by the
C-terminal region of one subunit and the N-terminal
region of the other.
Length = 269
Score = 91.4 bits (228), Expect = 1e-22
Identities = 36/88 (40%), Positives = 52/88 (59%), Gaps = 2/88 (2%)
Query: 106 VKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEW 165
+ ALAED G GD+T A IP D A +AKE+G++AG+ +AE +F +D ++VEW
Sbjct: 4 LDRALAEDLG-YGDLTTEALIPGDAPATATLIAKEEGVLAGLEVAEEVFELLD-GIEVEW 61
Query: 166 SLKDGDHVHKGLQFGKVSGKPRKINSFW 193
+KDGD V G +V G R + +
Sbjct: 62 LVKDGDRVEAGQVLLEVEGPARSLLTAE 89
>gnl|CDD|223235 COG0157, NadC, Nicotinate-nucleotide pyrophosphorylase [Coenzyme
metabolism].
Length = 280
Score = 86.5 bits (215), Expect = 1e-20
Identities = 37/92 (40%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
Query: 98 PTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEV 157
P + +V AL ED G RGD+T A IP D + EA +AKE G++AG+ +AE +F +
Sbjct: 2 PILLIDDLVDAALLEDLG-RGDITTEALIPEDRKAEAVIIAKEAGVVAGLDVAEEVFELL 60
Query: 158 DPSLKVEWSLKDGDHVHKGLQFGKVSGKPRKI 189
PS++++W +KDGD V G ++ G R +
Sbjct: 61 GPSIEIQWLVKDGDRVKPGDVLAEIEGPARAL 92
>gnl|CDD|217214 pfam02749, QRPTase_N, Quinolinate phosphoribosyl transferase,
N-terminal domain. Quinolinate phosphoribosyl
transferase (QPRTase) or nicotinate-nucleotide
pyrophosphorylase EC:2.4.2.19 is involved in the de novo
synthesis of NAD in both prokaryotes and eukaryotes. It
catalyzes the reaction of quinolinic acid with
5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence
of Mg2+ to give rise to nicotinic acid mononucleotide
(NaMN), pyrophosphate and carbon dioxide. The QA
substrate is bound between the C-terminal domain of one
subunit, and the N-terminal domain of the other. The
N-terminal domain has an alpha/beta hammerhead fold.
Length = 88
Score = 78.7 bits (195), Expect = 1e-19
Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 115 GDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVH 174
RGD+T A IP D +A +AKE+G++AG+ A +F + L+VEW +KDG+ V
Sbjct: 1 IGRGDLTTEALIPPDKRAKAVIIAKEEGVVAGLEEAAEVFELLG--LEVEWLVKDGERVE 58
Query: 175 KGLQFGKVSGKPRKINSFW 193
G ++ G R + +
Sbjct: 59 AGDVILEIEGPARALLTAE 77
>gnl|CDD|180402 PRK06106, PRK06106, nicotinate-nucleotide pyrophosphorylase;
Provisional.
Length = 281
Score = 70.4 bits (173), Expect = 8e-15
Identities = 35/96 (36%), Positives = 51/96 (53%)
Query: 94 LPSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMI 153
LP P L+ +V+ AL ED G GD+T A +P D +A++ G+IAG+ LA +
Sbjct: 3 LPPLPRLMLEPLVRAALLEDLGRAGDITSDAIVPADHRATVVLVARQPGVIAGLDLARLA 62
Query: 154 FHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGKPRKI 189
F VDP +++ L DG V G +SG R +
Sbjct: 63 FRLVDPEIEMRRHLPDGAAVAPGDVIATISGPARGL 98
>gnl|CDD|232814 TIGR00078, nadC, nicotinate-nucleotide pyrophosphorylase. Synonym:
quinolinate phosphoribosyltransferase (decarboxylating)
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Pyridine nucleotides].
Length = 265
Score = 68.8 bits (169), Expect = 3e-14
Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 106 VKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEW 165
+ L ED G GD+T A +P A +AKEDG++AG+ +A +F ++ ++VEW
Sbjct: 2 LDRWLREDLG-SGDITTEALVPGSTRATASLVAKEDGVLAGLPVARRVFEQLG--VQVEW 58
Query: 166 SLKDGDHVHKGLQFGKVSGKPRKI 189
+KDGD V G +V G R +
Sbjct: 59 LVKDGDRVEPGEVVAEVEGPARSL 82
>gnl|CDD|180612 PRK06543, PRK06543, nicotinate-nucleotide pyrophosphorylase;
Provisional.
Length = 281
Score = 67.5 bits (165), Expect = 8e-14
Identities = 33/96 (34%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 94 LPSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMI 153
L SH +V+ ALAEDA GD+T IP AH A+E G+ +GI +
Sbjct: 2 LTSHIIDR---IVEAALAEDA-PWGDITSETLIPASATASAHLTAREPGVFSGIDVFAAA 57
Query: 154 FHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGKPRKI 189
F VDP++ V ++ DG+ G V+G R +
Sbjct: 58 FRLVDPAITVTLAVADGERFEAGDILATVTGPARSV 93
>gnl|CDD|181221 PRK08072, PRK08072, nicotinate-nucleotide pyrophosphorylase;
Provisional.
Length = 277
Score = 66.6 bits (163), Expect = 2e-13
Identities = 31/83 (37%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 102 LKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSL 161
LK + ED G+ GDVT P ++ E FLAK+ G+ AG + E + +D +
Sbjct: 6 LKQALNRFFLEDIGE-GDVTSQLIFPDNLLGEGVFLAKDTGVFAGRLVIEEGYKLLDERI 64
Query: 162 KVEWSLKDGDHVHKGLQFGKVSG 184
+VE KDGD V KG V G
Sbjct: 65 EVELHKKDGDLVKKGEIIATVQG 87
>gnl|CDD|180230 PRK05742, PRK05742, nicotinate-nucleotide pyrophosphorylase;
Provisional.
Length = 277
Score = 63.7 bits (155), Expect = 2e-12
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 106 VKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEW 165
V+ ALAED G GD+T IP + +A + +E +IAG A + +F ++DP + V W
Sbjct: 13 VRRALAEDIGS-GDITAQ-LIPAERLAKATVITREAAVIAGTAWVDAVFRQLDPRVAVHW 70
Query: 166 SLKDGDHVHKGLQFGKVSGKPRKI 189
+ DG+ V + G R +
Sbjct: 71 QVADGERVSANQVLFHLEGPARSL 94
>gnl|CDD|236255 PRK08385, PRK08385, nicotinate-nucleotide pyrophosphorylase;
Provisional.
Length = 278
Score = 61.6 bits (150), Expect = 1e-11
Identities = 32/81 (39%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Query: 110 LAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIF-HEVDPSLKVEWSLK 168
+ EDA GDVT A IP D+ A +AK+DG+IAG+ A+ +F H +KVE +
Sbjct: 10 VEEDA-PFGDVTSEAVIPPDVTARAVIIAKQDGVIAGLEEAKALFEHF---GVKVEVRKR 65
Query: 169 DGDHVHKGLQFGKVSGKPRKI 189
DG+ V G ++ G R I
Sbjct: 66 DGEEVKAGEVILELKGNARAI 86
>gnl|CDD|236125 PRK07896, PRK07896, nicotinate-nucleotide pyrophosphorylase;
Provisional.
Length = 289
Score = 61.6 bits (150), Expect = 1e-11
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Query: 101 DLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEV--D 158
+ + V++ AL ED DVT +AT+P D A +++E G++AG+ +A ++ EV
Sbjct: 14 EARAVIRRALDEDLRYGPDVTTVATVPADAVATASVVSREAGVVAGLDVALLVLDEVLGT 73
Query: 159 PSLKVEWSLKDGDHVHKGLQFGKVSGKPR 187
+V ++DG V G V+ R
Sbjct: 74 DGYEVLDRVEDGARVPPGQALLTVTAPTR 102
>gnl|CDD|236017 PRK07428, PRK07428, nicotinate-nucleotide pyrophosphorylase;
Provisional.
Length = 288
Score = 49.3 bits (118), Expect = 2e-07
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 110 LAEDAGDRGDVTCMATIPLDMEV-EAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLK 168
L ED G RGD T + D +A ++AKE G+IAG+ +A +F +DP + +
Sbjct: 21 LREDIG-RGDRTTQGLLLEDATTGQAKWIAKESGVIAGLPIAARVFQLLDPQVSFTPLVA 79
Query: 169 DGDHVHKG 176
+G G
Sbjct: 80 EGAACESG 87
>gnl|CDD|180286 PRK05848, PRK05848, nicotinate-nucleotide pyrophosphorylase;
Provisional.
Length = 273
Score = 45.0 bits (107), Expect = 6e-06
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 12/89 (13%)
Query: 101 DLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGI----ALAEMIFHE 156
++K ++ AL ED G RGD+ D + A +AK +G+ +G L EM
Sbjct: 2 EIKDFLEAALKEDLG-RGDLFERLLEK-DFKATAKIIAKSEGVFSGEKYALELLEMT--- 56
Query: 157 VDPSLKVEWSLKDGDHVHKGLQFGKVSGK 185
++ +++KDG+ KG ++ G
Sbjct: 57 ---GIECVFTIKDGERFKKGDILMEIEGD 82
>gnl|CDD|235900 PRK06978, PRK06978, nicotinate-nucleotide pyrophosphorylase;
Provisional.
Length = 294
Score = 45.1 bits (107), Expect = 7e-06
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 106 VKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEW 165
V A+AED G GD T +P A + +E+ ++ G+ + + VDPS++V W
Sbjct: 29 VADAIAEDVGS-GDQTGR-LVPAGEPRRARVIVREEAVLCGVPWFDAVMRAVDPSIEVTW 86
Query: 166 SLKDGD 171
++GD
Sbjct: 87 RYREGD 92
>gnl|CDD|238286 cd00516, PRTase_typeII, Phosphoribosyltransferase (PRTase) type II;
This family contains two enzymes that play an important
role in NAD production by either allowing quinolinic
acid (QA) , quinolinate phosphoribosyl transferase
(QAPRTase), or nicotinic acid (NA), nicotinate
phosphoribosyltransferase (NAPRTase), to be used in the
synthesis of NAD. QAPRTase catalyses the reaction of
quinolinic acid (QA) with
5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence
of Mg2+ to produce nicotinic acid mononucleotide (NAMN),
pyrophosphate and carbon dioxide, an important step in
the de novo synthesis of NAD. NAPRTase catalyses a
similar reaction leading to NAMN and pyrophosphate,
using nicotinic acid an PPRP as substrates, used in the
NAD salvage pathway.
Length = 281
Score = 43.8 bits (104), Expect = 2e-05
Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 7/82 (8%)
Query: 119 DVTCMATI----PLDMEVEAHFLAKED--GIIAGIALAEMIFHEVD-PSLKVEWSLKDGD 171
D+ + I P D A F A+ED G++AG+ A + + P V ++ +G
Sbjct: 1 DLYKLTMIQAYPPPDTRATAEFTAREDPYGVLAGLEEALELLELLRFPGPLVILAVPEGT 60
Query: 172 HVHKGLQFGKVSGKPRKINSFW 193
V G + G R++
Sbjct: 61 VVEPGEPLLTIEGPARELLLLE 82
>gnl|CDD|181612 PRK09016, PRK09016, quinolinate phosphoribosyltransferase;
Validated.
Length = 296
Score = 43.1 bits (102), Expect = 3e-05
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 101 DLKGVVKLALAEDAGDRGDVTCMAT---IPLDMEVEAHFLAKEDGIIAGIALAEMIFHEV 157
D+ V AL ED G D T +P D A + +EDG+ G E +F ++
Sbjct: 22 DIPAAVAQALREDLGGTVDANNDITAQLLPADSRSHATIITREDGVFCGKRWVEEVFIQL 81
Query: 158 DPSLKVEWSLKDGDHVH 174
+ +EW + DGD +
Sbjct: 82 GDDVTIEWHVDDGDVIT 98
>gnl|CDD|180397 PRK06096, PRK06096, molybdenum transport protein ModD; Provisional.
Length = 284
Score = 41.6 bits (98), Expect = 9e-05
Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
Query: 110 LAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKD 169
L ED GD+T A F ++ G ++GI++A + + L ++ ++ D
Sbjct: 13 LLEDI-QGGDLTTRALGIGHQPGYIEFFHRQGGCVSGISVACKMLTTLG--LTIDDAVSD 69
Query: 170 GDHVHKGLQFGKVSGKPRKINSFW 193
G + G + G ++ W
Sbjct: 70 GSQANAGQRLISAQGNAAALHQGW 93
>gnl|CDD|235831 PRK06559, PRK06559, nicotinate-nucleotide pyrophosphorylase;
Provisional.
Length = 290
Score = 34.6 bits (79), Expect = 0.024
Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 3/92 (3%)
Query: 100 YDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDP 159
+ + +K AL ED D + A + + AKE G++AG+ + + +F D
Sbjct: 11 FQIDDTLKAALREDVHSE-DYSTNAIFDHHGQAKVSLFAKEAGVLAGLTVFQRVFTLFDA 69
Query: 160 SLKVE--WSLKDGDHVHKGLQFGKVSGKPRKI 189
+ + KDGD + G ++ G R +
Sbjct: 70 EVTFQNPHQFKDGDRLTSGDLVLEIIGSVRSL 101
>gnl|CDD|130401 TIGR01334, modD, putative molybdenum utilization protein ModD. The
gene modD for a member of this family is found with
molybdenum transport genes modABC in Rhodobacter
capsulatus. However, disruption of modD causes only a
4-fold (rather than 500-fold for modA, modB, modC)
change in the external molybdenum concentration required
to suppress an alternative nitrogenase. ModD proteins
are highly similar to nicotinate-nucleotide
pyrophosphorylase (also called quinolinate
phosphoribosyltransferase). The function unknown
[Unknown function, General].
Length = 277
Score = 33.7 bits (77), Expect = 0.039
Identities = 19/84 (22%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Query: 110 LAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKD 169
L ED G GD+T A D F A+++GI++G++ A + ++ +++++
Sbjct: 12 LLEDIG-YGDLTTRALGIQDHPAHITFTARDEGIVSGVSEAAKLLKQLG--ASIDYAVPS 68
Query: 170 GDHVHKGLQFGKVSGKPRKINSFW 193
G G + G +++ W
Sbjct: 69 GSRALAGTLLLEAKGSAGQLHQGW 92
>gnl|CDD|236146 PRK08064, PRK08064, cystathionine beta-lyase; Provisional.
Length = 390
Score = 29.7 bits (67), Expect = 0.88
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 12/69 (17%)
Query: 92 IKLPSHPTY---DLKGVVKLALAEDAGDRGDVTCMATI---PLDMEVE------AHFLAK 139
++ PS+P D++GVVKLA A D T + + PLD+ + FLA
Sbjct: 144 VETPSNPLLKVTDIRGVVKLAKAIGCLTFVDNTFLTPLLQKPLDLGADVVLHSATKFLAG 203
Query: 140 EDGIIAGIA 148
++AG+A
Sbjct: 204 HSDVLAGLA 212
>gnl|CDD|214497 smart00062, PBPb, Bacterial periplasmic substrate-binding proteins.
bacterial proteins, eukaryotic ones are in PBPe.
Length = 219
Score = 27.7 bits (62), Expect = 3.3
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 137 LAKEDGIIAG--IALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKV 182
A EDG + G + LA+ I E+ LKVE+ D + L+ GK+
Sbjct: 15 FADEDGELTGFDVDLAKAIAKELG--LKVEFVEVSFDSLLTALKSGKI 60
>gnl|CDD|215520 PLN02964, PLN02964, phosphatidylserine decarboxylase.
Length = 644
Score = 27.1 bits (60), Expect = 6.6
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 163 VEWSLKDGDHVHKGLQFGKVS 183
+ + K+GDHV KG + G S
Sbjct: 565 ITFVKKEGDHVKKGDELGYFS 585
>gnl|CDD|218197 pfam04661, Pox_I3, Poxvirus I3 ssDNA-binding protein.
Length = 263
Score = 27.0 bits (60), Expect = 7.1
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 127 PLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLK 168
+ E+E LAK D +A L ++F+ KV ++LK
Sbjct: 164 SISRELEN--LAKRDPQMAKAILVPIVFYRNGNECKVTFALK 203
>gnl|CDD|166635 PLN02994, PLN02994, 1-aminocyclopropane-1-carboxylate synthase.
Length = 153
Score = 26.5 bits (58), Expect = 7.8
Identities = 5/19 (26%), Positives = 13/19 (68%)
Query: 95 PSHPTYDLKGVVKLALAED 113
P ++ +G++++ LAE+
Sbjct: 35 PFDLLHNPQGIIQMGLAEN 53
>gnl|CDD|232861 TIGR00181, pepF, oligoendopeptidase F. This family represents the
oligoendopeptidase F clade of the family of larger M3 or
thimet (for thiol-dependent metallopeptidase)
oligopeptidase family. Lactococcus lactis PepF
hydrolyzed peptides of 7 and 17 amino acids with fairly
broad specificity. The homolog of lactococcal PepF in
group B Streptococcus was named PepB (PMID:8757883),
with the name difference reflecting a difference in
species of origin rather activity; substrate profiles
were quite similar. Differences in substrate specificity
should be expected in other species. The gene is
duplicated in Lactococcus lactis on the plasmid that
bears it. A shortened second copy is found in Bacillus
subtilis [Protein fate, Degradation of proteins,
peptides, and glycopeptides].
Length = 591
Score = 26.9 bits (60), Expect = 8.2
Identities = 7/18 (38%), Positives = 8/18 (44%)
Query: 142 GIIAGIALAEMIFHEVDP 159
G +A AL E I E
Sbjct: 523 GQVAATALYEKIKEEGKG 540
>gnl|CDD|223925 COG0856, COG0856, Orotate phosphoribosyltransferase homologs
[Nucleotide transport and metabolism].
Length = 203
Score = 26.3 bits (58), Expect = 9.0
Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 7/51 (13%)
Query: 142 GI-IAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQ------FGKVSGK 185
GI I+G+ LA M+ +E+ L + K G F V GK
Sbjct: 92 GIAISGVPLATMVAYELGKELAIYHPRKHRKDEGAGKGGSISSNFASVEGK 142
>gnl|CDD|238807 cd01573, modD_like, ModD; Quinolinate phosphoribosyl transferase
(QAPRTase or QPRTase) present in some modABC operons in
bacteria, which are involved in molybdate transport. In
general, QPRTases are part of the de novo synthesis
pathway of NAD in both prokaryotes and eukaryotes. They
catalyse the reaction of quinolinic acid (QA) with
5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence
of Mg2+ to produce nicotinic acid mononucleotide (NAMN),
pyrophosphate and carbon dioxide.
Length = 272
Score = 26.5 bits (59), Expect = 9.6
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
Query: 110 LAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKD 169
L EDA GD+T A + + F A++ G++ G A I + L+V+ +
Sbjct: 8 LLEDA-PYGDLTTEALGIGEQPGKITFRARDPGVLCGTEEAARILELLG--LEVDLAAAS 64
Query: 170 GDHVHKGLQFGKVSGKPRKINSFW 193
G V G + G ++ W
Sbjct: 65 GSRVAAGAVLLEAEGPAAALHLGW 88
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.138 0.426
Gapped
Lambda K H
0.267 0.0720 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,005,318
Number of extensions: 940490
Number of successful extensions: 743
Number of sequences better than 10.0: 1
Number of HSP's gapped: 735
Number of HSP's successfully gapped: 36
Length of query: 193
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 101
Effective length of database: 6,857,034
Effective search space: 692560434
Effective search space used: 692560434
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.4 bits)