RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 029418
(193 letters)
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural
genomics, NPPSFA, national project O structural and
functional analyses; 1.90A {Thermus thermophilus}
Length = 286
Score = 106 bits (268), Expect = 1e-28
Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
Query: 95 PSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIF 154
+ L+ ++ L ED G GD+T + +P D+E EA LAKE G++AG+ +AE +F
Sbjct: 7 EALWQGGLEEALRAWLREDLGQ-GDLTSLLVVPEDLEGEAVILAKEGGVLAGLWVAERVF 65
Query: 155 HEVDPSLKVEWSLKDGDHVHKGLQFGKVSGKPRKI 189
DP + +G V +G + +V G R I
Sbjct: 66 ALADPRTAFTPLVAEGARVAEGTEVARVRGPLRGI 100
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI,
UW, emerald biostructures, ALS collaborative
crystallography; 2.05A {Ehrlichia chaffeensis}
Length = 300
Score = 106 bits (266), Expect = 4e-28
Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 1/95 (1%)
Query: 95 PSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIF 154
P ++ AL ED GD+GD+T + + + +V +E+ ++ GI + E +F
Sbjct: 19 PGSMKISFSEIIHNALKEDLGDKGDITTNSILI-NEKVNFAINTRENLVVCGIPILEEVF 77
Query: 155 HEVDPSLKVEWSLKDGDHVHKGLQFGKVSGKPRKI 189
+ +K E KDGD K +
Sbjct: 78 NMNKEHVKYEIHKKDGDITGKNSTLVSGEALAIYL 112
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase,
transferase; 2.62A {Francisella tularensis subsp}
Length = 287
Score = 104 bits (262), Expect = 1e-27
Identities = 23/97 (23%), Positives = 48/97 (49%), Gaps = 3/97 (3%)
Query: 93 KLPSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEM 152
++ P + +V+ +LAED GD+T A + D++ A + +E+ I+ G A
Sbjct: 10 QINKVPNDIVTRLVRESLAEDIAT-GDIT--AQLAEDIDTTAFCITREEMILCGQDFANE 66
Query: 153 IFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGKPRKI 189
+ +++D ++++ W D V + ++ G R I
Sbjct: 67 VINQLDKNIQITWLYSDAQKVPANARIFELKGNVRSI 103
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures,
ssgcid, niaid, SBRI, UWPPG, glycosyltransferase,
transferase, structural genomics; 2.25A {Burkholderia
pseudomallei}
Length = 298
Score = 104 bits (261), Expect = 1e-27
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 2/105 (1%)
Query: 85 PGFESPAIKLPSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGII 144
P F + + + + V ALAED G GD T +P A + +ED ++
Sbjct: 12 PLFADISREYGAAFDAAIARNVADALAEDVG-SGDQTG-RLVPDGAPRRARVIVREDAVL 69
Query: 145 AGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGKPRKI 189
G+ + + VDPS++V+W ++GD + ++ G R +
Sbjct: 70 CGVPWFDAVVRAVDPSIEVDWRHREGDRMSADSTVCELRGPARAL 114
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de
novo NAD biosynthesis, PRPP, phosphoribos transferase;
2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1
d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Length = 284
Score = 103 bits (260), Expect = 2e-27
Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 2/98 (2%)
Query: 94 LPSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMI 153
L + + L ED DVT +AT+P A + +E G++AG+ +A +
Sbjct: 2 LSDWELAAARAAIARGLDEDLRYGPDVTTLATVPASATTTASLVTREAGVVAGLDVALLT 61
Query: 154 FHEVDPSLKVE--WSLKDGDHVHKGLQFGKVSGKPRKI 189
+EV + ++DG V G + + R +
Sbjct: 62 LNEVLGTNGYRVLDRVEDGARVPPGEALMTLEAQTRGL 99
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD
biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium}
SCOP: c.1.17.1 d.41.2.1
Length = 296
Score = 99.2 bits (248), Expect = 1e-25
Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 4/100 (4%)
Query: 94 LPSHPTYDLKGVVKLALAEDAGD---RGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALA 150
L D+ V AL ED G G+ +P D + A + +EDG+ G
Sbjct: 14 LLERINLDIPAAVAQALREDLGGEVDAGNDITAQLLPADTQAHATVITREDGVFCGKRWV 73
Query: 151 EMIFHEV-DPSLKVEWSLKDGDHVHKGLQFGKVSGKPRKI 189
E +F ++ +++ W + DGD +H ++ G R +
Sbjct: 74 EEVFIQLAGDDVRLTWHVDDGDAIHANQTVFELQGPARVL 113
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel,
pyridin dicarboxylate, 5-phospho-alpha-D-ribose
1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Length = 320
Score = 98.8 bits (247), Expect = 3e-25
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 5/93 (5%)
Query: 101 DLKGVVKLALAEDAGDR----GDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHE 156
D+ V L ED G D+T + IP D A + +E G+ G A+ +F +
Sbjct: 45 DITRSVIDTLKEDLGGTLDPAADITA-SLIPADRISTATIITREAGVFCGQLWADEVFKQ 103
Query: 157 VDPSLKVEWSLKDGDHVHKGLQFGKVSGKPRKI 189
+ + +EW ++DGD + ++G R +
Sbjct: 104 LGGQVSIEWHVQDGDTLTPNQTLCTLTGPARIL 136
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate
phosphoribosyltransferase, quinolinic acid, HELI pylori,
transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB:
2b7p_A* 2b7q_A*
Length = 273
Score = 94.0 bits (235), Expect = 8e-24
Identities = 17/89 (19%), Positives = 37/89 (41%), Gaps = 4/89 (4%)
Query: 101 DLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPS 160
+++ ++ AL ED G GD+ + D + A AK++G+ +G A +
Sbjct: 2 EIRTFLERALKEDLG-HGDLFE-RVLEKDFKATAFVRAKQEGVFSGEKYALELLEMTGI- 58
Query: 161 LKVEWSLKDGDHVHKGLQFGKVSGKPRKI 189
+ ++KD + ++ G +
Sbjct: 59 -ECVQTIKDKERFKPKDALMEIRGDFSML 86
>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism,
transferase, polymorphism, glycosyltransferase, pyridine
nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens}
PDB: 3lar_A
Length = 299
Score = 90.7 bits (226), Expect = 2e-22
Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 5/92 (5%)
Query: 98 PTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEV 157
P L +V L ED + A + +A AK G++AG + IF ++
Sbjct: 13 PPVTLAALVDSWLREDCPG---LNYAALVSGAGPSQAALWAKSPGVLAGQPFFDAIFTQL 69
Query: 158 DPSLKVEWSLKDGDHVHKGLQFGKVSGKPRKI 189
+ +V W L +G + + +V G +
Sbjct: 70 NC--QVSWFLPEGSKLVPVARVAEVRGPAHCL 99
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural
genomics, joint center for structural genomics, J
protein structure initiative; 2.50A {Thermotoga
maritima} SCOP: c.1.17.1 d.41.2.1
Length = 285
Score = 86.8 bits (216), Expect = 5e-21
Identities = 20/102 (19%), Positives = 45/102 (44%), Gaps = 6/102 (5%)
Query: 89 SPAIKLPSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIA-GI 147
S I H + ++ + ED G + D+ + AH L K + ++A GI
Sbjct: 3 SDKIHHHHHHMEKILDLLMSFVKEDEG-KLDLASFPLR--NTTAGAHLLLKTENVVASGI 59
Query: 148 ALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGKPRKI 189
++ M ++ +++++DG+++ G++ G K+
Sbjct: 60 EVSRMFLEKMGL--LSKFNVEDGEYLEGTGVIGEIEGNTYKL 99
>3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6,
mechanism, cytoplasm, glycosyltransferase, nucleus;
1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A*
3c2v_A* 3c2r_A*
Length = 294
Score = 86.4 bits (215), Expect = 7e-21
Identities = 23/102 (22%), Positives = 43/102 (42%), Gaps = 13/102 (12%)
Query: 94 LPSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMI 153
LP + + V L+ED D + EA+ K+DG++ G+ A+ +
Sbjct: 7 LPVNGA--WRQDVTNWLSEDVP-SFDFG--GYVVGSDLKEANLYCKQDGMLCGVPFAQEV 61
Query: 154 FHEVDPSLKVEWSLKDGDHVHKGLQFG------KVSGKPRKI 189
F++ + +VEW K+G + K++G + I
Sbjct: 62 FNQCEL--QVEWLFKEGSFLEPSKNDSGKIVVAKITGPAKNI 101
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.2 bits (83), Expect = 0.005
Identities = 26/178 (14%), Positives = 52/178 (29%), Gaps = 61/178 (34%)
Query: 15 FFPLFPGLLIWQSSHSCGQVIIEALLSAHLIGASERALMPGILSISTLVWPHLCTNSRQV 74
G Q ++ +A I + + W + R+
Sbjct: 263 LRSYLKGAT------GHSQGLV----TAVAIAET-----------DS--WESFFVSVRKA 299
Query: 75 VKMSA-TGIRKPGFESPAIKLPSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVE 133
+ + G+R + Y + ++ ED+ + + +P M
Sbjct: 300 ITVLFFIGVR------------CYEAYPNTS-LPPSILEDSLENNE-----GVPSPM--- 338
Query: 134 AHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGK----VSGKPR 187
L+ I+ + ++ + V+ K L G V L G VSG P+
Sbjct: 339 ---LS-----ISNLTQEQVQDY-VN---KTNSHLPAGKQVEISLVNGAKNLVVSGPPQ 384
Score = 33.5 bits (76), Expect = 0.046
Identities = 24/125 (19%), Positives = 45/125 (36%), Gaps = 39/125 (31%)
Query: 45 IGASERALMPGI--LSISTLVWP---HLCTNSRQVVK--MSATGIRKPGFESPAIKLPSH 97
I SER L L +++ P HL + ++ + + F + I++P +
Sbjct: 407 IPFSERKLKFSNRFLPVAS---PFHSHLLVPASDLINKDLVKNNVS---FNAKDIQIPVY 460
Query: 98 PTYD------LKGVVKLALAEDAGDRGDVTCMATIPLDMEVEA-----HFLAKED---GI 143
T+D L G + + + C+ +P+ E H L D G
Sbjct: 461 DTFDGSDLRVLSGSISERIVD---------CIIRLPVKWETTTQFKATHIL---DFGPGG 508
Query: 144 IAGIA 148
+G+
Sbjct: 509 ASGLG 513
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural
genomics, riken structural genomics/proteomics in RSGI,
ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga
maritima}
Length = 380
Score = 28.6 bits (65), Expect = 1.2
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Query: 100 YDLKGVVKLALAEDAGDRGDVTCMA--TIPLDMEVEAHFLAK-EDGIIAGIALAEMIFHE 156
YD +GV + +D + + ++ E+ A +A+ E G IA + EM F E
Sbjct: 144 YDGRGVFIIKNEKDLENAIKGETYLEEFVEIEKEL-AVMVARNEKGEIACYPVVEMYFDE 202
Query: 157 VD 158
Sbjct: 203 DA 204
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.138 0.426
Gapped
Lambda K H
0.267 0.0768 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,050,211
Number of extensions: 182557
Number of successful extensions: 366
Number of sequences better than 10.0: 1
Number of HSP's gapped: 348
Number of HSP's successfully gapped: 19
Length of query: 193
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 105
Effective length of database: 4,244,745
Effective search space: 445698225
Effective search space used: 445698225
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (24.9 bits)