RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 029418
         (193 letters)



>d1qapa2 d.41.2.1 (A:8-129) Quinolinic acid
           phosphoribosyltransferase (Nicotinate-nucleotide
           pyrophosphorylase, NadC), N-terminal domain {Salmonella
           typhimurium [TaxId: 90371]}
          Length = 122

 Score = 78.4 bits (193), Expect = 1e-19
 Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 4/94 (4%)

Query: 100 YDLKGVVKLALAEDAG---DRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHE 156
            D+   V  AL ED G   D G+      +P D +  A  + +EDG+  G    E +F +
Sbjct: 13  LDIPAAVAQALREDLGGEVDAGNDITAQLLPADTQAHATVITREDGVFCGKRWVEEVFIQ 72

Query: 157 V-DPSLKVEWSLKDGDHVHKGLQFGKVSGKPRKI 189
           +    +++ W + DGD +H      ++ G  R +
Sbjct: 73  LAGDDVRLTWHVDDGDAIHANQTVFELQGPARVL 106


>d1qpoa2 d.41.2.1 (A:2-116) Quinolinic acid
           phosphoribosyltransferase (Nicotinate-nucleotide
           pyrophosphorylase, NadC), N-terminal domain
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 115

 Score = 77.7 bits (191), Expect = 1e-19
 Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 2/90 (2%)

Query: 102 LKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSL 161
            +  +   L ED     DVT +AT+P      A  + +E G++AG+ +A +  +EV  + 
Sbjct: 10  ARAAIARGLDEDLRYGPDVTTLATVPASATTTASLVTREAGVVAGLDVALLTLNEVLGTN 69

Query: 162 KV--EWSLKDGDHVHKGLQFGKVSGKPRKI 189
                  ++DG  V  G     +  + R +
Sbjct: 70  GYRVLDRVEDGARVPPGEALMTLEAQTRGL 99


>d1o4ua2 d.41.2.1 (A:1-103) Quinolinic acid
           phosphoribosyltransferase (Nicotinate-nucleotide
           pyrophosphorylase, NadC), N-terminal domain {Thermotoga
           maritima [TaxId: 2336]}
          Length = 103

 Score = 54.2 bits (130), Expect = 1e-10
 Identities = 17/89 (19%), Positives = 38/89 (42%), Gaps = 6/89 (6%)

Query: 106 VKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAG-IALAEMIFHEVDPSLKVE 164
           +   + ED G + D+        +    AH L K + ++A  I ++ M        L  +
Sbjct: 8   LMSFVKEDEG-KLDLASFPLR--NTTAGAHLLLKTENVVASGIEVSRMFLE--KMGLLSK 62

Query: 165 WSLKDGDHVHKGLQFGKVSGKPRKINSFW 193
           ++++DG+++      G++ G   K+    
Sbjct: 63  FNVEDGEYLEGTGVIGEIEGNTYKLLVAE 91


>d2d4pa1 d.108.1.1 (A:1-130) Hypothetical protein TTHA1254 {Thermus
           thermophilus [TaxId: 274]}
          Length = 130

 Score = 25.7 bits (56), Expect = 2.2
 Identities = 11/42 (26%), Positives = 18/42 (42%)

Query: 136 FLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGL 177
           FLA+E     G ALA+ ++     ++ V           +GL
Sbjct: 38  FLAEEGEEPMGFALAQAVWQGEATTVLVTRIEGRSVEALRGL 79


>d1brwa3 d.41.3.1 (A:331-433) Pyrimidine nucleoside phosphorylase
           {Bacillus stearothermophilus [TaxId: 1422]}
          Length = 103

 Score = 24.7 bits (54), Expect = 4.5
 Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 13/53 (24%)

Query: 137 LAKEDGIIA-------GIALAEM------IFHEVDPSLKVEWSLKDGDHVHKG 176
            A  DG +A       G A   +          +D ++ +    K GD V KG
Sbjct: 9   TAAADGYVAEMAADDIGTAAMWLGAGRAKKEDVIDLAVGIVLHKKIGDRVQKG 61


>d1r17a1 b.2.3.4 (A:276-424) Fibrinogen-binding adhesin SdrG
           {Staphylococcus epidermidis [TaxId: 1282]}
          Length = 149

 Score = 24.8 bits (54), Expect = 5.9
 Identities = 4/20 (20%), Positives = 8/20 (40%)

Query: 160 SLKVEWSLKDGDHVHKGLQF 179
           +L  + + +  D V  G   
Sbjct: 33  NLIYDVTFEVDDKVKSGDTM 52


>d1t0aa_ d.79.5.1 (A:) 2C-methyl-D-erythritol 2,4-cyclodiphosphate
          synthase IspF {Shewanella oneidensis [TaxId: 70863]}
          Length = 158

 Score = 24.4 bits (53), Expect = 8.2
 Identities = 8/34 (23%), Positives = 13/34 (38%)

Query: 9  LVKGNIFFPLFPGLLIWQSSHSCGQVIIEALLSA 42
          L+   +  P   GL+           I +A+L A
Sbjct: 19 LILCGVEVPYETGLVAHSDGDVVLHAISDAILGA 52


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.138    0.426 

Gapped
Lambda     K      H
   0.267   0.0656    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 729,181
Number of extensions: 32267
Number of successful extensions: 99
Number of sequences better than 10.0: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 12
Length of query: 193
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 112
Effective length of database: 1,295,466
Effective search space: 145092192
Effective search space used: 145092192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.2 bits)