BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029419
(193 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1S31|A Chain A, Crystal Structure Analysis Of The Human Tub Protein
(isoform A) Spanning Residues 289 Through 561
Length = 273
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 48/82 (58%), Gaps = 13/82 (15%)
Query: 120 QPGPREFPHQCLIRRNKKT------STFYLYLALTPSFSEKGK--FLLAARRYRRGAHSE 171
+P P+ +C I R+KK T++L+L E GK FLLA R+ ++ S
Sbjct: 24 RPAPQGITIKCRITRDKKGMDRGMFPTYFLHLD-----REDGKKVFLLAGRKRKKSKTSN 78
Query: 172 YIISLDAGDLSQGSNAYVGKLR 193
Y+IS+D DLS+G ++Y+GKLR
Sbjct: 79 YLISVDPTDLSRGGDSYIGKLR 100
>pdb|1I7E|A Chain A, C-Terminal Domain Of Mouse Brain Tubby Protein Bound To
Phosphatidylinositol 4,5-Bis-Phosphate
Length = 265
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 48/82 (58%), Gaps = 13/82 (15%)
Query: 120 QPGPREFPHQCLIRRNKKT------STFYLYLALTPSFSEKGK--FLLAARRYRRGAHSE 171
+P P+ +C I R+KK T++L+L E GK FLLA R+ ++ S
Sbjct: 16 RPAPQGITIKCRITRDKKGMDRGMFPTYFLHLD-----REDGKKVFLLAGRKRKKSKTSN 70
Query: 172 YIISLDAGDLSQGSNAYVGKLR 193
Y+IS+D DLS+G ++Y+GKLR
Sbjct: 71 YLISVDPTDLSRGGDSYIGKLR 92
>pdb|1C8Z|A Chain A, C-Terminal Domain Of Mouse Brain Tubby Protein
Length = 265
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 48/82 (58%), Gaps = 13/82 (15%)
Query: 120 QPGPREFPHQCLIRRNKKT------STFYLYLALTPSFSEKGK--FLLAARRYRRGAHSE 171
+P P+ +C I R+KK T++L+L E GK FLLA R+ ++ S
Sbjct: 16 RPAPQGITIKCRITRDKKGMDRGMFPTYFLHLD-----REDGKKVFLLAGRKRKKSKTSN 70
Query: 172 YIISLDAGDLSQGSNAYVGKLR 193
Y+IS+D DLS+G ++Y+GKLR
Sbjct: 71 YLISVDPTDLSRGGDSYIGKLR 92
>pdb|2FIM|A Chain A, Structure Of The C-Terminal Domain Of Human Tubby-Like
Protein 1
pdb|2FIM|B Chain B, Structure Of The C-Terminal Domain Of Human Tubby-Like
Protein 1
Length = 276
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 9/79 (11%)
Query: 120 QPGPREFPHQCLIRRNKKTSTFYLYLALTPSF-----SEKGKFLLAARRYRRGAHSEYII 174
+P P+ +C + R+KK +Y PS+ +EK FLLA R+ +R + Y+I
Sbjct: 31 RPAPQGRTVRCRLTRDKKGMDRGMY----PSYFLHLDTEKKVFLLAGRKRKRSKTANYLI 86
Query: 175 SLDAGDLSQGSNAYVGKLR 193
S+D +LS+G ++GKLR
Sbjct: 87 SIDPTNLSRGGENFIGKLR 105
>pdb|3C5N|A Chain A, Structure Of Human Tulp1 In Complex With Ip3
pdb|3C5N|B Chain B, Structure Of Human Tulp1 In Complex With Ip3
Length = 246
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 9/79 (11%)
Query: 120 QPGPREFPHQCLIRRNKKTSTFYLYLALTPSF-----SEKGKFLLAARRYRRGAHSEYII 174
+P P+ +C + R+KK +Y PS+ +EK FLLA R+ +R + Y+I
Sbjct: 7 RPAPQGRTVRCRLTRDKKGMDRGMY----PSYFLHLDTEKKVFLLAGRKRKRSKTANYLI 62
Query: 175 SLDAGDLSQGSNAYVGKLR 193
S+D +LS+G ++GKLR
Sbjct: 63 SIDPTNLSRGGENFIGKLR 81
>pdb|2EIX|A Chain A, The Structure Of Physarum Polycephalum Cytochrome B5
Reductase
pdb|2EIX|B Chain B, The Structure Of Physarum Polycephalum Cytochrome B5
Reductase
Length = 243
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 143 LYLALTP--SFSEKGKFLLAARRYRRGAHSEYIISLDAGDLSQ 183
+Y TP S EKG F L + Y +G S+YI L+ GD Q
Sbjct: 59 IYRPYTPVSSDDEKGYFDLIIKVYEKGQMSQYIDHLNPGDFLQ 101
>pdb|4EPP|A Chain A, Canonical Poly(Adp-Ribose) Glycohydrolase From Tetrahymena
Thermophila.
pdb|4EPP|B Chain B, Canonical Poly(Adp-Ribose) Glycohydrolase From Tetrahymena
Thermophila
Length = 477
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 124 REFPHQCLIRRNKKTSTFYLYLALTPSFSEK-GKFLLAARRYRRGAHSEY 172
++ Q IRR +K FY YL FSEK K ++ +R G +Y
Sbjct: 175 KDLVQQINIRRQEKIKCFYEYLKQALDFSEKESKEVVIFQRINCGQLEDY 224
>pdb|4EPQ|A Chain A, Canonical Poly(Adp-Ribose) Glycohydrolase Rbpi Inhibitor
Complex From Tetrahymena Thermophila
Length = 477
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 124 REFPHQCLIRRNKKTSTFYLYLALTPSFSEK-GKFLLAARRYRRGAHSEY 172
++ Q IRR +K FY YL FSEK K ++ +R G +Y
Sbjct: 175 KDLVQQINIRRQEKIKCFYEYLKQALDFSEKESKEVVIFQRINCGQLEDY 224
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,702,686
Number of Sequences: 62578
Number of extensions: 156956
Number of successful extensions: 296
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 289
Number of HSP's gapped (non-prelim): 11
length of query: 193
length of database: 14,973,337
effective HSP length: 93
effective length of query: 100
effective length of database: 9,153,583
effective search space: 915358300
effective search space used: 915358300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)