Query 029419
Match_columns 193
No_of_seqs 166 out of 238
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 12:36:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029419.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029419hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2502 Tub family proteins [G 100.0 3.2E-53 7E-58 382.0 9.6 139 55-193 43-183 (355)
2 PF01167 Tub: Tub family; Int 99.9 1.3E-26 2.8E-31 199.6 1.6 73 121-193 1-74 (246)
3 PF12937 F-box-like: F-box-lik 98.3 1.7E-07 3.8E-12 60.9 0.8 36 57-100 1-36 (47)
4 PF00646 F-box: F-box domain; 98.1 5.4E-07 1.2E-11 58.0 -0.6 39 56-102 2-40 (48)
5 PLN03215 ascorbic acid mannose 98.0 3.1E-06 6.8E-11 78.1 2.3 41 55-102 2-42 (373)
6 smart00256 FBOX A Receptor for 97.9 2.8E-06 6E-11 52.1 0.2 34 60-101 1-34 (41)
7 KOG2997 F-box protein FBX9 [Ge 93.5 0.03 6.5E-07 52.2 0.9 96 54-159 101-236 (366)
8 KOG2120 SCF ubiquitin ligase, 89.0 0.12 2.5E-06 48.7 -0.1 62 56-125 97-160 (419)
9 KOG0274 Cdc4 and related F-box 43.4 5.5 0.00012 38.7 -1.1 42 53-102 104-145 (537)
10 PF14642 FAM47: FAM47 family 33.0 18 0.00039 32.8 0.6 38 57-104 138-178 (258)
11 PF01690 PLRV_ORF5: Potato lea 32.2 61 0.0013 31.7 4.0 32 140-176 184-215 (465)
12 KOG4341 F-box protein containi 32.0 21 0.00046 34.9 0.9 37 59-103 74-110 (483)
13 PF09372 PRANC: PRANC domain; 31.1 25 0.00055 25.9 1.0 21 54-74 69-89 (97)
14 PHA02875 ankyrin repeat protei 26.0 49 0.0011 29.3 2.1 22 53-74 383-404 (413)
15 PF13013 F-box-like_2: F-box-l 24.1 34 0.00073 27.0 0.7 49 56-112 21-72 (109)
16 KOG0281 Beta-TrCP (transducin 23.4 33 0.00072 33.2 0.6 36 58-101 76-115 (499)
17 PF10711 DUF2513: Hypothetical 21.2 75 0.0016 23.9 2.0 19 60-78 2-20 (102)
18 PRK13890 conjugal transfer pro 20.8 1E+02 0.0022 24.0 2.8 35 57-104 84-118 (120)
No 1
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=100.00 E-value=3.2e-53 Score=382.03 Aligned_cols=139 Identities=54% Similarity=0.947 Sum_probs=136.0
Q ss_pred CCCCCCCHHHHHHHHhhhhcccCCCCcccceeeecccchhHHHHHHhhhcCCCccccccccccccCCCCCCCceeEEEEe
Q 029419 55 GSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRR 134 (193)
Q Consensus 55 ~~Wa~lPpELL~dIi~Rve~se~~wP~r~~vvaca~VCr~WR~i~keiv~~Pe~~Gkitfp~~LkqPgPrd~~iQCfIkR 134 (193)
+.|++||||||+|||+|+|++|+.||+|++||+||+||+.||+++++||++|+.+|++|||+||+||||+|.++||||+|
T Consensus 43 ~~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~~v~~~~~~~k~~~~~~l~qP~P~~~~~qC~I~R 122 (355)
T KOG2502|consen 43 SLWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKEIVAPPEPSSKLTFPASLKQPGPRGVLVQCYIKR 122 (355)
T ss_pred chhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccccccCCccccccchhHHhcCCCCCCceEEEEEEE
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCeeeecccCCCCC--CCCCeEEEccccccCCCCccEEEeccCCCCCCCCCcceeecC
Q 029419 135 NKKTSTFYLYLALTPSF--SEKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLR 193 (193)
Q Consensus 135 dK~g~tY~LyL~l~~~~--~e~gKFLLAARKrkrs~tSnYiISld~~DlSR~S~~yVGKLR 193 (193)
||+|.+|+||++|.+.+ .|++||||||||+|++||+|||||+|++||||++++||||||
T Consensus 123 dks~~~~~Ly~~l~~~l~~~d~~kfLLaark~rr~~~t~yiiS~d~~~lSr~~~~yvGklR 183 (355)
T KOG2502|consen 123 DKSGMDRGLYLSLYLHLEREDNKKFLLAARKRRRSKTTNYLISLDPTDLSRGSESYVGKLR 183 (355)
T ss_pred ccCCCceeeeecccccccccccceeeeeeeeecccccceeEEeccccccccCccceeeeee
Confidence 99999999999998865 378999999999999999999999999999999999999998
No 2
>PF01167 Tub: Tub family; InterPro: IPR000007 Tubby, an autosomal recessive mutation, mapping to mouse chromosome 7, was recently found to be the result of a splicing defect in a novel gene with unknown function. This mutation maps to the tub gene [, ]. The mouse tubby mutation is the cause of maturity-onset obesity, insulin resistance and sensory deficits. By contrast with the rapid juvenile-onset weight gain seen in diabetes (db) and obese (ob) mice, obesity in tubby mice develops gradually, and strongly resembles the late-onset obesity observed in the human population. Excessive deposition of adipose tissue culminates in a two-fold increase of body weight. Tubby mice also suffer retinal degeneration and neurosensory hearing loss. The tripartite character of the tubby phenotype is highly similar to human obesity syndromes, such as Alstrom and Bardet-Biedl. Although these phenotypes indicate a vital role for tubby proteins, no biochemical function has yet been ascribed to any family member [], although it has been suggested that the phenotypic features of tubby mice may be the result of cellular apoptosis triggered by expression of the mutated tub gene. TUB is the founding-member of the tubby-like proteins, the TULPs. TULPs are found in multicellular organisms from both the plant and animal kingdoms. Ablation of members of this protein family cause disease phenotypes that are indicative of their importance in nervous-system function and development []. Mammalian TUB is a hydrophilic protein of ~500 residues. The N-terminal (IPR005398 from INTERPRO) portion of the protein is conserved neither in length nor sequence, but, in TUB, contains the nuclear localisation signal and may have transcriptional-activation activity. The C-terminal 250 residues are highly conserved. The C-terminal extremity contains a cysteine residue that might play an important role in the normal functioning of these proteins. The crystal structure of the C-terminal core domain from mouse tubby has been determined to 1.9A resolution. This domain is arranged as a 12-stranded, all anti-parallel, closed beta-barrel that surrounds a central alpha helix, (which is at the extreme carboxyl terminus of the protein) that forms most of the hydrophobic core. Structural analyses suggest that TULPs constitute a unique family of bipartite transcription factors [].; PDB: 3C5N_B 2FIM_A 1I7E_A 1C8Z_A 1S31_A.
Probab=99.92 E-value=1.3e-26 Score=199.60 Aligned_cols=73 Identities=58% Similarity=0.843 Sum_probs=58.6
Q ss_pred CCCCCCceeEEEEecCCCCeeeecccCCCCC-CCCCeEEEccccccCCCCccEEEeccCCCCCCCCCcceeecC
Q 029419 121 PGPREFPHQCLIRRNKKTSTFYLYLALTPSF-SEKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLR 193 (193)
Q Consensus 121 PgPrd~~iQCfIkRdK~g~tY~LyL~l~~~~-~e~gKFLLAARKrkrs~tSnYiISld~~DlSR~S~~yVGKLR 193 (193)
|||+|++|||||+|||+|.+|+||+.+...+ .++|+|||||||+++++|||||||+|++||||++++||||||
T Consensus 1 P~P~~~~vqC~I~R~k~g~~~~lyp~y~l~l~~~~~kfLLaArK~~~s~~s~YiIS~~~~dlsr~s~~yvGKLr 74 (246)
T PF01167_consen 1 PGPRGGPVQCFIRRDKSGLTRGLYPGYYLYLEGENGKFLLAARKRKRSKTSNYIISLDPDDLSRSSNNYVGKLR 74 (246)
T ss_dssp B--TT-EEEEEEEEESTTCCCT---EEEEEEESTTSEEEEEEEEECSSSSEEEEEESSHHHHCTT---ESEEEE
T ss_pred CCCCCcEEEEEEEEECCCCCcccCcEeEeccccCCCcEEEeeeecccCCCcceEEecCCCccccCCCceeeeec
Confidence 8999999999999999997766666665544 389999999999999999999999999999999999999997
No 3
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.31 E-value=1.7e-07 Score=60.92 Aligned_cols=36 Identities=33% Similarity=0.633 Sum_probs=30.8
Q ss_pred CCCCCHHHHHHHHhhhhcccCCCCcccceeeecccchhHHHHHH
Q 029419 57 WAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITK 100 (193)
Q Consensus 57 Wa~lPpELL~dIi~Rve~se~~wP~r~~vvaca~VCr~WR~i~k 100 (193)
|..||+|++.+|+..+ |.. ++..|+.|||.|+.++.
T Consensus 1 i~~LP~Eil~~If~~L-------~~~-dl~~~~~vcr~w~~~~~ 36 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYL-------DPR-DLLRLSLVCRRWRRIAN 36 (47)
T ss_dssp CCCS-HHHHHHHHTTS--------HH-HHHHHTTSSHHHHHHHT
T ss_pred ChHhHHHHHHHHHhcC-------CHH-HHHHHHHHHHHHHHHHC
Confidence 7899999999999998 333 89999999999999984
No 4
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.07 E-value=5.4e-07 Score=57.98 Aligned_cols=39 Identities=26% Similarity=0.520 Sum_probs=32.0
Q ss_pred CCCCCCHHHHHHHHhhhhcccCCCCcccceeeecccchhHHHHHHhh
Q 029419 56 SWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDI 102 (193)
Q Consensus 56 ~Wa~lPpELL~dIi~Rve~se~~wP~r~~vvaca~VCr~WR~i~kei 102 (193)
.|.+||+|++.+|+.+++. +++++|+.||+.|+.++++.
T Consensus 2 ~~~~LP~~il~~Il~~l~~--------~~~~~l~~vsk~~~~~~~~~ 40 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLDP--------KDLLRLSLVSKRWRSLVDSP 40 (48)
T ss_dssp HHHHS-HHHHHHHHHTS-H--------HHHHHHCTT-HHHHHHHTTH
T ss_pred CHHHCCHHHHHHHHHHCcH--------HHHHHHHHHhhHHHHHHcCC
Confidence 4789999999999999954 46999999999999998765
No 5
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=97.99 E-value=3.1e-06 Score=78.12 Aligned_cols=41 Identities=24% Similarity=0.528 Sum_probs=38.0
Q ss_pred CCCCCCCHHHHHHHHhhhhcccCCCCcccceeeecccchhHHHHHHhh
Q 029419 55 GSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDI 102 (193)
Q Consensus 55 ~~Wa~lPpELL~dIi~Rve~se~~wP~r~~vvaca~VCr~WR~i~kei 102 (193)
..|++||+|||..|..|| |++-+++--++||++||..+...
T Consensus 2 ~~Ws~Lp~dll~~i~~~l-------~~~~d~~~~~~vC~sWr~a~~~~ 42 (373)
T PLN03215 2 ADWSTLPEELLHMIAGRL-------FSNVELKRFRSICRSWRSSVSGV 42 (373)
T ss_pred CChhhCCHHHHHHHHhhC-------CcHHHHHHHHhhhhhHHHhcccc
Confidence 469999999999999999 99999999999999999987753
No 6
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=97.90 E-value=2.8e-06 Score=52.15 Aligned_cols=34 Identities=29% Similarity=0.655 Sum_probs=30.7
Q ss_pred CCHHHHHHHHhhhhcccCCCCcccceeeecccchhHHHHHHh
Q 029419 60 LLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKD 101 (193)
Q Consensus 60 lPpELL~dIi~Rve~se~~wP~r~~vvaca~VCr~WR~i~ke 101 (193)
||+|++.+|+.++ +. +++.+|+.||++|+.++.+
T Consensus 1 lP~~ll~~I~~~l-------~~-~d~~~~~~vc~~~~~~~~~ 34 (41)
T smart00256 1 LPDEILEEILSKL-------PP-KDLLRLRKVSRRWRSLIDS 34 (41)
T ss_pred CCHHHHHHHHHcC-------CH-HHHHHHHHHHHHHHHHhcC
Confidence 7999999999999 55 6899999999999998864
No 7
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=93.46 E-value=0.03 Score=52.16 Aligned_cols=96 Identities=22% Similarity=0.305 Sum_probs=60.4
Q ss_pred CCCCCC---CCHHHHHHHHhhhhcccCCCCcccceeeecccchhHHHHHHhhh-------cCCCcc-----cccc----c
Q 029419 54 SGSWAG---LLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIV-------KSPFLS-----GKIT----F 114 (193)
Q Consensus 54 ~~~Wa~---lPpELL~dIi~Rve~se~~wP~r~~vvaca~VCr~WR~i~keiv-------~~Pe~~-----Gkit----f 114 (193)
|+.|-+ ||+|+|..||++|-.+.- .-++.+.||+|||.|+-.+++=- |.=..+ +++. +
T Consensus 101 qp~~~~~~~LPdEvLm~I~~~vv~~~~---d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~KvW~~s~~~ln~~~~~sky~ 177 (366)
T KOG2997|consen 101 QPELISISVLPDEVLMRIFRWVVSSLL---DLRSLEQLSLVCRGFYKCARDPELWRLACLKVWQRSCIKLNPKILQSKYY 177 (366)
T ss_pred chhhhhhhhCCHHHHHHHHHHHHhhhc---chhhHHHhHhhHHHHHHHHcChHHHHHHHHHHHHHhhhccchhhhhhHHH
Confidence 677766 999999999999953321 12577899999999877665310 100111 1111 1
Q ss_pred ----cccccCCCCC-CCceeEEEEecC---CC-------------CeeeecccCCCCCCCCCeEEE
Q 029419 115 ----PSCLKQPGPR-EFPHQCLIRRNK---KT-------------STFYLYLALTPSFSEKGKFLL 159 (193)
Q Consensus 115 ----p~~LkqPgPr-d~~iQCfIkRdK---~g-------------~tY~LyL~l~~~~~e~gKFLL 159 (193)
.-||..|--+ || |+|-++. -| -+||-|+.+- .+|+||+
T Consensus 178 ~SWR~Mfl~RpRvrFdG---~YIS~~tYiR~G~~~~~~~~~PVHlV~YYRYiRFy----P~G~~l~ 236 (366)
T KOG2997|consen 178 TSWREMFLERPRVRFDG---VYISKTTYIRQGENSLDSFYRPVHLVEYYRYIRFY----PDGHVLM 236 (366)
T ss_pred hHHHHHHhhCcceeecc---eEEEEEeEeecCchhhhhhcCcceeeEEEEEEEec----CCCcEEE
Confidence 1267777654 45 7776662 23 2899999854 5788776
No 8
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=89.00 E-value=0.12 Score=48.72 Aligned_cols=62 Identities=26% Similarity=0.454 Sum_probs=45.0
Q ss_pred CCCCCCHHHHHHHHhhhhcccCCCCcccceeeecccchhHHHHHHh--hhcCCCccccccccccccCCCCCC
Q 029419 56 SWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKD--IVKSPFLSGKITFPSCLKQPGPRE 125 (193)
Q Consensus 56 ~Wa~lPpELL~dIi~Rve~se~~wP~r~~vvaca~VCr~WR~i~ke--iv~~Pe~~Gkitfp~~LkqPgPrd 125 (193)
.|-.||.|+|.+|+.-| +-++...-++||++|.++..+ +-..-..-|+--=|+.+-+=..|+
T Consensus 97 ~~~slpDEill~IFs~L--------~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p~~l~~l~~rg 160 (419)
T KOG2120|consen 97 SWDSLPDEILLGIFSCL--------CKKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIHPDVLGRLLSRG 160 (419)
T ss_pred CcccCCHHHHHHHHHhc--------cHHHHHHHHHHHHHHhhccccccceeeeccCCCccChhHHHHHHhCC
Confidence 49999999999999876 567889999999999998765 233334445544555555544454
No 9
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=43.43 E-value=5.5 Score=38.70 Aligned_cols=42 Identities=21% Similarity=0.344 Sum_probs=35.4
Q ss_pred CCCCCCCCCHHHHHHHHhhhhcccCCCCcccceeeecccchhHHHHHHhh
Q 029419 53 SSGSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDI 102 (193)
Q Consensus 53 ~~~~Wa~lPpELL~dIi~Rve~se~~wP~r~~vvaca~VCr~WR~i~kei 102 (193)
+..-=..||.||.--|+.-+ +. ++...|+.||+.|+.++..=
T Consensus 104 ~~dfi~~lp~el~~~il~~L-------d~-~~l~~~~~v~~~w~~~~~~~ 145 (537)
T KOG0274|consen 104 QRDFLSLLPSELSLHILSFL-------DG-RDLLAVRQVCRNWNKLLDDD 145 (537)
T ss_pred ccchhhcccchhcccccccC-------CH-HHhhhhhhhcchhhhhhhcc
Confidence 55556779999999999999 55 67999999999999988653
No 10
>PF14642 FAM47: FAM47 family
Probab=32.96 E-value=18 Score=32.81 Aligned_cols=38 Identities=24% Similarity=0.542 Sum_probs=29.0
Q ss_pred CCCCCHHHHHHHHhhhhcc---cCCCCcccceeeecccchhHHHHHHhhhc
Q 029419 57 WAGLLPELLGEIIRRVETT---EDSWPHRQNVVACACVCKRWREITKDIVK 104 (193)
Q Consensus 57 Wa~lPpELL~dIi~Rve~s---e~~wP~r~~vvaca~VCr~WR~i~keiv~ 104 (193)
-.+||||||.+||.=|+-. |+.| +-|.-++..+++-.+
T Consensus 138 eE~mPpdLll~VLevLDPerkLed~w----------a~cE~~ek~t~ept~ 178 (258)
T PF14642_consen 138 EEDMPPDLLLKVLEVLDPERKLEDTW----------AYCEGREKTTKEPTE 178 (258)
T ss_pred cccCCHHHHHHHHhccCcccchhhhh----------hhhcccccccCCCcc
Confidence 4569999999999988543 5677 567888888877654
No 11
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=32.16 E-value=61 Score=31.74 Aligned_cols=32 Identities=22% Similarity=0.461 Sum_probs=25.8
Q ss_pred eeeecccCCCCCCCCCeEEEccccccCCCCccEEEec
Q 029419 140 TFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIISL 176 (193)
Q Consensus 140 tY~LyL~l~~~~~e~gKFLLAARKrkrs~tSnYiISl 176 (193)
.|||--. .++|.|+|.|=+..|.-.-||++|-
T Consensus 184 SFhl~~~-----~~~~~f~l~aPpi~K~~kYNY~VSY 215 (465)
T PF01690_consen 184 SFHLEAT-----GDDASFFLVAPPIQKTSKYNYVVSY 215 (465)
T ss_pred EEEEEec-----CCCceEEEecCCcccccccceEEEe
Confidence 4555443 4788999999999999999999874
No 12
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=32.04 E-value=21 Score=34.91 Aligned_cols=37 Identities=24% Similarity=0.510 Sum_probs=30.5
Q ss_pred CCCHHHHHHHHhhhhcccCCCCcccceeeecccchhHHHHHHhhh
Q 029419 59 GLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIV 103 (193)
Q Consensus 59 ~lPpELL~dIi~Rve~se~~wP~r~~vvaca~VCr~WR~i~keiv 103 (193)
.|||||+.-|+.-|+ + +..--||.||+.|--.+-+-.
T Consensus 74 ~LPpEl~lkvFS~LD----t----ksl~r~a~~c~~~n~~AlD~~ 110 (483)
T KOG4341|consen 74 SLPPELLLKVFSMLD----T----KSLCRAAQCCTMWNKLALDGS 110 (483)
T ss_pred cCCHHHHHHHHHHHh----H----HHHHHHHHHHHHhhhhhhccc
Confidence 599999999999993 2 455679999999998887755
No 13
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=31.10 E-value=25 Score=25.89 Aligned_cols=21 Identities=19% Similarity=0.276 Sum_probs=18.2
Q ss_pred CCCCCCCCHHHHHHHHhhhhc
Q 029419 54 SGSWAGLLPELLGEIIRRVET 74 (193)
Q Consensus 54 ~~~Wa~lPpELL~dIi~Rve~ 74 (193)
++.|..||+|+-..|+.-|..
T Consensus 69 ~~~w~~LP~EIk~~Il~~L~~ 89 (97)
T PF09372_consen 69 NNYWNILPIEIKYKILEYLSN 89 (97)
T ss_pred CCchhhCCHHHHHHHHHcCCH
Confidence 478999999999999988743
No 14
>PHA02875 ankyrin repeat protein; Provisional
Probab=26.04 E-value=49 Score=29.31 Aligned_cols=22 Identities=18% Similarity=0.326 Sum_probs=19.1
Q ss_pred CCCCCCCCCHHHHHHHHhhhhc
Q 029419 53 SSGSWAGLLPELLGEIIRRVET 74 (193)
Q Consensus 53 ~~~~Wa~lPpELL~dIi~Rve~ 74 (193)
.++.|..||+|+-..||..|..
T Consensus 383 ~~~~w~~LP~Eik~~Il~~l~~ 404 (413)
T PHA02875 383 DESKWNILPHEIKYLILEKIGN 404 (413)
T ss_pred cccchhcCcHHHHHHHHHHhcc
Confidence 4678999999999999998844
No 15
>PF13013 F-box-like_2: F-box-like domain
Probab=24.11 E-value=34 Score=26.98 Aligned_cols=49 Identities=20% Similarity=0.317 Sum_probs=32.5
Q ss_pred CCCCCCHHHHHHHHhhhhcccCCCCcccceeeecccch---hHHHHHHhhhcCCCccccc
Q 029419 56 SWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCK---RWREITKDIVKSPFLSGKI 112 (193)
Q Consensus 56 ~Wa~lPpELL~dIi~Rve~se~~wP~r~~vvaca~VCr---~WR~i~keiv~~Pe~~Gki 112 (193)
.=-+||.|||..|+..-.. ....+.-..|+ +||......+..|+.|-.+
T Consensus 21 tl~DLP~ELl~~I~~~C~~--------~~l~~l~~~~~~~r~~r~~~~~~L~~p~~c~~l 72 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCND--------PILLALSRTCRAYRSWRDHIWYLLPKPQSCTRL 72 (109)
T ss_pred chhhChHHHHHHHHhhcCc--------HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 3567999999999988743 22333334444 6677767777777777644
No 16
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=23.40 E-value=33 Score=33.21 Aligned_cols=36 Identities=25% Similarity=0.648 Sum_probs=26.6
Q ss_pred CCCC----HHHHHHHHhhhhcccCCCCcccceeeecccchhHHHHHHh
Q 029419 58 AGLL----PELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKD 101 (193)
Q Consensus 58 a~lP----pELL~dIi~Rve~se~~wP~r~~vvaca~VCr~WR~i~ke 101 (193)
..|| .++..-|+..|++ .+.-+|--||+.|++++.+
T Consensus 76 ~~lP~~gl~hi~e~ilsyld~--------~sLc~celv~k~W~r~l~d 115 (499)
T KOG0281|consen 76 TALPEQGLDHIAENILSYLDA--------LSLCACELVCKEWKRVLSD 115 (499)
T ss_pred HhcccccHHHHHHHHHHhcch--------hhhhHHHHHHHHHHHHhcc
Confidence 3466 6666666766643 5778899999999998765
No 17
>PF10711 DUF2513: Hypothetical protein (DUF2513); InterPro: IPR019650 The function of this family is not known.
Probab=21.19 E-value=75 Score=23.92 Aligned_cols=19 Identities=21% Similarity=0.340 Sum_probs=16.1
Q ss_pred CCHHHHHHHHhhhhcccCC
Q 029419 60 LLPELLGEIIRRVETTEDS 78 (193)
Q Consensus 60 lPpELL~dIi~Rve~se~~ 78 (193)
+.+||+|+||..+|+.+..
T Consensus 2 rd~DlIR~iLl~iE~~~~~ 20 (102)
T PF10711_consen 2 RDMDLIRDILLEIEENPDP 20 (102)
T ss_pred CCHHHHHHHHHHHHcCCCc
Confidence 5689999999999997653
No 18
>PRK13890 conjugal transfer protein TrbA; Provisional
Probab=20.78 E-value=1e+02 Score=24.02 Aligned_cols=35 Identities=23% Similarity=0.419 Sum_probs=26.3
Q ss_pred CCCCCHHHHHHHHhhhhcccCCCCcccceeeecccchhHHHHHHhhhc
Q 029419 57 WAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVK 104 (193)
Q Consensus 57 Wa~lPpELL~dIi~Rve~se~~wP~r~~vvaca~VCr~WR~i~keiv~ 104 (193)
...+||.+.+ ++.+| |.. =|.|+|.|-+-++.+++
T Consensus 84 ~~~~~~~~~~-lld~L-------~~~-----PA~v~~~~~~~~~~~~~ 118 (120)
T PRK13890 84 PRSLPPGFER-VAAVL-------PEH-----QAFIVKKWGEATRKKLR 118 (120)
T ss_pred CCCCChHHHH-HHHHc-------CCc-----cHHHHHHHHHHHHHHHc
Confidence 5578998666 88888 332 14699999999988875
Done!