Query 029419
Match_columns 193
No_of_seqs 166 out of 238
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 20:45:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029419.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029419hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3c5n_A Tubby-related protein 1 99.9 2.7E-28 9.2E-33 209.5 7.2 74 115-193 2-81 (246)
2 2fim_A Tubby related protein 1 99.9 8E-28 2.8E-32 209.8 7.6 75 114-193 25-105 (276)
3 1fs1_A SKP2 F-BOX, cyclin A/CD 98.6 1.7E-08 5.8E-13 65.8 1.7 40 53-100 5-44 (53)
4 2ast_B S-phase kinase-associat 97.8 6.6E-06 2.3E-10 67.0 1.7 40 53-100 5-44 (336)
5 2e31_A FBS1, F-box only protei 97.7 1.3E-05 4.4E-10 70.4 2.1 40 54-101 48-88 (297)
6 2p1m_B Transport inhibitor res 97.5 1.6E-05 5.6E-10 69.2 0.9 42 53-101 2-43 (594)
7 2ovr_B FBW7, F-BOX/WD repeat p 96.8 0.00036 1.2E-08 58.2 1.5 41 53-101 15-55 (445)
8 3v7d_B Cell division control p 96.6 0.00038 1.3E-08 57.9 0.7 41 53-101 11-51 (464)
9 3ogk_B Coronatine-insensitive 96.1 0.0014 4.8E-08 57.2 1.0 37 57-100 13-49 (592)
10 1p22_A F-BOX/WD-repeat protein 96.1 0.0011 3.8E-08 55.4 0.3 40 54-101 8-51 (435)
11 3l2o_B F-box only protein 4; s 96.0 0.00078 2.7E-08 60.1 -1.0 38 56-101 4-41 (312)
No 1
>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A
Probab=99.95 E-value=2.7e-28 Score=209.52 Aligned_cols=74 Identities=36% Similarity=0.721 Sum_probs=62.3
Q ss_pred cccccCCCCCCCceeEEEEecCCC------CeeeecccCCCCCCCCCeEEEccccccCCCCccEEEeccCCCCCCCCCcc
Q 029419 115 PSCLKQPGPREFPHQCLIRRNKKT------STFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAY 188 (193)
Q Consensus 115 p~~LkqPgPrd~~iQCfIkRdK~g------~tY~LyL~l~~~~~e~gKFLLAARKrkrs~tSnYiISld~~DlSR~S~~y 188 (193)
..||+||||+|++|||+|+|||+| |+||||++ .++++|||||||+++++|||||||+|++||||++++|
T Consensus 2 ~~fl~~P~P~~~~~qC~I~R~k~g~~~~~yp~y~l~~~-----~~~~~fLlaark~~~~~~s~YiIS~d~~dlsr~s~~y 76 (246)
T 3c5n_A 2 REFVLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLD-----TEKKVFLLAGRKRKRSKTANYLISIDPTNLSRGGENF 76 (246)
T ss_dssp TTGGGSCCCTTCEEEEEEEECC------CCCEEEEEES-----SSSCCEEEEEEECTTCSSCEEEEESCTTC------CE
T ss_pred hhHcCCCCCCCceEEEEEEEeCCCCCCCCceEEEEEEe-----CCCcEEEEeeeeccCCCCceEEEEeCccccccCCceE
Confidence 479999999999999999999998 79999997 4677899999999999999999999999999999999
Q ss_pred eeecC
Q 029419 189 VGKLR 193 (193)
Q Consensus 189 VGKLR 193 (193)
|||||
T Consensus 77 vGKLr 81 (246)
T 3c5n_A 77 IGKLR 81 (246)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99997
No 2
>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A*
Probab=99.94 E-value=8e-28 Score=209.78 Aligned_cols=75 Identities=36% Similarity=0.694 Sum_probs=64.0
Q ss_pred ccccccCCCCCCCceeEEEEecCCC------CeeeecccCCCCCCCCCeEEEccccccCCCCccEEEeccCCCCCCCCCc
Q 029419 114 FPSCLKQPGPREFPHQCLIRRNKKT------STFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNA 187 (193)
Q Consensus 114 fp~~LkqPgPrd~~iQCfIkRdK~g------~tY~LyL~l~~~~~e~gKFLLAARKrkrs~tSnYiISld~~DlSR~S~~ 187 (193)
+..||+||+|+|++|||+|+|||+| |+|||||+ .++++|||||||+|+++|+||+||+|++||||++++
T Consensus 25 ~~~fl~~P~P~~~~iqC~I~R~k~g~~~g~yp~y~L~l~-----~~~~~fLLaarK~k~~~ts~YiIS~d~~dlsr~s~~ 99 (276)
T 2fim_A 25 PREFVLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLD-----TEKKVFLLAGRKRKRSKTANYLISIDPTNLSRGGEN 99 (276)
T ss_dssp CTTGGGSCCCTTCCEEEEEEEEC-------CCEEEEEEC-----SSSCEEEEEEEECTTCSSCEEEEESCTTC------C
T ss_pred HHHHhcCCCCCCCeEEEEEEEeCCCCCCCCceEEEEEEe-----CCCCEEEEEEEeccCCCCceEEEEecchhcccCCce
Confidence 6689999999999999999999998 79999997 478899999999999999999999999999999999
Q ss_pred ceeecC
Q 029419 188 YVGKLR 193 (193)
Q Consensus 188 yVGKLR 193 (193)
||||||
T Consensus 100 yvGKLr 105 (276)
T 2fim_A 100 FIGKLR 105 (276)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999997
No 3
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.56 E-value=1.7e-08 Score=65.81 Aligned_cols=40 Identities=30% Similarity=0.525 Sum_probs=33.1
Q ss_pred CCCCCCCCCHHHHHHHHhhhhcccCCCCcccceeeecccchhHHHHHH
Q 029419 53 SSGSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITK 100 (193)
Q Consensus 53 ~~~~Wa~lPpELL~dIi~Rve~se~~wP~r~~vvaca~VCr~WR~i~k 100 (193)
++..|++||+|+|..|+.+| |. ++++.|+.|||+|+.++.
T Consensus 5 ~~~~~~~LP~eil~~I~~~L-------~~-~dl~~~~~Vck~w~~~~~ 44 (53)
T 1fs1_A 5 PGVSWDSLPDELLLGIFSCL-------CL-PELLKVSGVCKRWYRLAS 44 (53)
T ss_dssp ----CCSSCHHHHHHHHTTS-------CG-GGHHHHHTTCHHHHHHHT
T ss_pred CCCCHHHCCHHHHHHHHHcC-------CH-HHHHHHHHHHHHHHHHhC
Confidence 45679999999999999999 43 689999999999999875
No 4
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=97.77 E-value=6.6e-06 Score=66.96 Aligned_cols=40 Identities=30% Similarity=0.519 Sum_probs=34.4
Q ss_pred CCCCCCCCCHHHHHHHHhhhhcccCCCCcccceeeecccchhHHHHHH
Q 029419 53 SSGSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITK 100 (193)
Q Consensus 53 ~~~~Wa~lPpELL~dIi~Rve~se~~wP~r~~vvaca~VCr~WR~i~k 100 (193)
.+..|.+||+|+|..|+..+ +.+ +++.|+.|||+|++++.
T Consensus 5 ~~~~~~~LP~eil~~If~~L-------~~~-d~~~~~~vc~~W~~~~~ 44 (336)
T 2ast_B 5 PGVSWDSLPDELLLGIFSCL-------CLP-ELLKVSGVCKRWYRLAS 44 (336)
T ss_dssp --CCSSSSCHHHHHHHHTTS-------CHH-HHHHTTSSCHHHHHHHT
T ss_pred ccCChhhCCHHHHHHHHHhC-------CHH-HHHHHHHHHHHHHHHhc
Confidence 46789999999999999999 444 88999999999999984
No 5
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=97.67 E-value=1.3e-05 Score=70.38 Aligned_cols=40 Identities=33% Similarity=0.628 Sum_probs=35.1
Q ss_pred CCCCCCCCHHHHHHHHhhhhcccCCCCccccee-eecccchhHHHHHHh
Q 029419 54 SGSWAGLLPELLGEIIRRVETTEDSWPHRQNVV-ACACVCKRWREITKD 101 (193)
Q Consensus 54 ~~~Wa~lPpELL~dIi~Rve~se~~wP~r~~vv-aca~VCr~WR~i~ke 101 (193)
......||+|||.+|+.+| |++ +++ .|++|||+||.++.+
T Consensus 48 ~~~~~~LP~ell~~Il~~L-------p~~-~L~~r~~~VCk~Wr~l~~~ 88 (297)
T 2e31_A 48 VEYLAELPEPLLLRVLAEL-------PAT-ELVQACRLVCLRWKELVDG 88 (297)
T ss_dssp CCCTTSSCHHHHHHHHHTS-------CHH-HHHHTGGGTCHHHHHHHTS
T ss_pred ccChhhCCHHHHHHHHHcC-------CHH-HHHHHHHHHhHHHHHHhcC
Confidence 3467899999999999999 875 788 999999999999764
No 6
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.54 E-value=1.6e-05 Score=69.24 Aligned_cols=42 Identities=19% Similarity=0.305 Sum_probs=30.8
Q ss_pred CCCCCCCCCHHHHHHHHhhhhcccCCCCcccceeeecccchhHHHHHHh
Q 029419 53 SSGSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKD 101 (193)
Q Consensus 53 ~~~~Wa~lPpELL~dIi~Rve~se~~wP~r~~vvaca~VCr~WR~i~ke 101 (193)
+...|+.||+|+|..|+.+| |..+++++|+.|||+|+++...
T Consensus 2 ~~d~~~~LPdevL~~If~~L-------~~~~d~~~~s~vck~W~~~~~~ 43 (594)
T 2p1m_B 2 QKRIALSFPEEVLEHVFSFI-------QLDKDRNSVSLVCKSWYEIERW 43 (594)
T ss_dssp --------CHHHHHHHHHTC-------CCHHHHHHHHTSCHHHHHHHHH
T ss_pred cccchhhCCHHHHHHHHhhc-------CCchhHHHHHHHHHHHHHhhhh
Confidence 45689999999999999999 7678999999999999999433
No 7
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=96.79 E-value=0.00036 Score=58.19 Aligned_cols=41 Identities=20% Similarity=0.335 Sum_probs=35.0
Q ss_pred CCCCCCCCCHHHHHHHHhhhhcccCCCCcccceeeecccchhHHHHHHh
Q 029419 53 SSGSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKD 101 (193)
Q Consensus 53 ~~~~Wa~lPpELL~dIi~Rve~se~~wP~r~~vvaca~VCr~WR~i~ke 101 (193)
...-.+.||+||+..|+..| + -++++.|+.|||+|+.++.+
T Consensus 15 ~~d~~~~lp~e~~~~i~~~l-------~-~~~l~~~~~v~~~~~~~~~~ 55 (445)
T 2ovr_B 15 QRDFISLLPKELALYVLSFL-------E-PKDLLQAAQTCRYWRILAED 55 (445)
T ss_dssp CCSTTTSSCHHHHHHHHTTS-------C-HHHHHHHTTSCHHHHHHHTC
T ss_pred cCChhHHCCHHHHHHHHHhC-------C-HHHHHHHHHHhHHHHhhcCc
Confidence 45668999999999999999 3 25799999999999998754
No 8
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=96.65 E-value=0.00038 Score=57.85 Aligned_cols=41 Identities=15% Similarity=0.289 Sum_probs=35.4
Q ss_pred CCCCCCCCCHHHHHHHHhhhhcccCCCCcccceeeecccchhHHHHHHh
Q 029419 53 SSGSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKD 101 (193)
Q Consensus 53 ~~~~Wa~lPpELL~dIi~Rve~se~~wP~r~~vvaca~VCr~WR~i~ke 101 (193)
+..-.+.||+|++..|+..| |. ++++.|+.|||.|+.++.+
T Consensus 11 ~~d~~~~lp~~~~~~i~~~l-------~~-~~l~~~~~v~~~w~~~~~~ 51 (464)
T 3v7d_B 11 KRDLITSLPFEISLKIFNYL-------QF-EDIINSLGVSQNWNKIIRK 51 (464)
T ss_dssp CCCHHHHSCHHHHHHHHTTS-------CH-HHHHHHHTTCHHHHHHHTT
T ss_pred ccCChHHCCHHHHHHHHhcC-------CH-HHHHHHHHHHHHHHHHHcC
Confidence 44557889999999999999 54 4899999999999998865
No 9
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=96.07 E-value=0.0014 Score=57.22 Aligned_cols=37 Identities=14% Similarity=0.474 Sum_probs=32.6
Q ss_pred CCCCCHHHHHHHHhhhhcccCCCCcccceeeecccchhHHHHHH
Q 029419 57 WAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITK 100 (193)
Q Consensus 57 Wa~lPpELL~dIi~Rve~se~~wP~r~~vvaca~VCr~WR~i~k 100 (193)
..+||+|+|..|+..| +..+++++|+.|||+|+.+..
T Consensus 13 ~~~LPdeil~~I~~~L-------~~~~d~~~~s~vck~W~~~~~ 49 (592)
T 3ogk_B 13 CVATVDDVIEQVMTYI-------TDPKDRDSASLVCRRWFKIDS 49 (592)
T ss_dssp CCCCGGGTHHHHHTTC-------CCHHHHHHHTTSCHHHHHHHH
T ss_pred cCCCCHHHHHHHHHhc-------CCHHHHHHHHHHhHHHHHhhh
Confidence 4589999999999999 556789999999999999853
No 10
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=96.07 E-value=0.0011 Score=55.42 Aligned_cols=40 Identities=23% Similarity=0.482 Sum_probs=33.1
Q ss_pred CCCCCCCCHH----HHHHHHhhhhcccCCCCcccceeeecccchhHHHHHHh
Q 029419 54 SGSWAGLLPE----LLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKD 101 (193)
Q Consensus 54 ~~~Wa~lPpE----LL~dIi~Rve~se~~wP~r~~vvaca~VCr~WR~i~ke 101 (193)
..--+.||+| |+..|+..|+. +++..|+.|||+|+.++.+
T Consensus 8 ~d~~~~lp~e~~~~~~~~i~~~l~~--------~~l~~~~~v~~~w~~~~~~ 51 (435)
T 1p22_A 8 RDFITALPARGLDHIAENILSYLDA--------KSLCAAELVCKEWYRVTSD 51 (435)
T ss_dssp CCHHHHTGGGTCHHHHHHHHTTCCH--------HHHHHHHHHCHHHHHHHHH
T ss_pred cChHHHCCcchHHHHHHHHHhcCCH--------HHHHHHHHHHHHHHHHhcC
Confidence 3345679999 99999999943 5889999999999988854
No 11
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=96.00 E-value=0.00078 Score=60.13 Aligned_cols=38 Identities=13% Similarity=0.228 Sum_probs=33.8
Q ss_pred CCCCCCHHHHHHHHhhhhcccCCCCcccceeeecccchhHHHHHHh
Q 029419 56 SWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKD 101 (193)
Q Consensus 56 ~Wa~lPpELL~dIi~Rve~se~~wP~r~~vvaca~VCr~WR~i~ke 101 (193)
-|.+||.|++..|+.-| ++ +++..|+.|||.||.++.+
T Consensus 4 ~l~~LP~ei~l~IlsfL-------~p-~DL~~l~~vcr~Wr~la~D 41 (312)
T 3l2o_B 4 TLTRLPIDVQLYILSFL-------SP-HDLCQLGSTNHYWNETVRD 41 (312)
T ss_dssp HHHHSCHHHHHHHHHTS-------CH-HHHHHHHTTCHHHHHHHTC
T ss_pred hhHhCCHHHHHHHHhcC-------CH-HHHHHHHHHHHHHHHHhcc
Confidence 36789999999999999 44 4799999999999999987
Done!