Query 029419
Match_columns 193
No_of_seqs 166 out of 238
Neff 3.6
Searched_HMMs 13730
Date Mon Mar 25 20:45:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029419.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029419hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1c8za_ d.23.1.1 (A:) Transcri 99.9 6.5E-27 4.7E-31 201.2 4.1 77 114-193 10-92 (265)
2 d1fs1a1 a.158.1.1 (A:109-149) 98.6 7.6E-09 5.5E-13 64.6 1.7 36 57-100 1-36 (41)
3 d2ovrb1 a.158.1.1 (B:2263-2364 97.9 8.4E-07 6.1E-11 62.0 0.9 41 53-101 15-55 (102)
4 d1nexb1 a.158.1.1 (B:270-369) 97.7 2E-06 1.5E-10 60.7 -0.2 37 56-100 5-41 (100)
5 d1p22a1 a.158.1.1 (A:135-252) 97.0 6.9E-05 5E-09 53.7 0.6 36 58-101 12-51 (118)
6 d1ucta1 b.1.1.4 (A:2-100) Ig a 25.7 40 0.0029 21.5 4.1 37 108-146 1-42 (99)
7 d2iqia1 c.51.6.2 (A:32-209) Hy 22.3 12 0.00086 27.0 0.8 23 53-75 52-75 (178)
8 d1gpma3 d.52.2.1 (A:405-525) G 19.1 24 0.0017 25.4 1.9 18 55-72 79-96 (121)
9 d1olla1 b.1.1.4 (A:1-95) Ligan 18.3 52 0.0038 21.1 3.4 19 126-146 21-39 (95)
10 d1w74a_ b.62.1.1 (A:) Peptidyl 15.9 1.1E+02 0.0078 21.4 5.0 38 155-192 98-136 (171)
No 1
>d1c8za_ d.23.1.1 (A:) Transcriptional factor tubby, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.92 E-value=6.5e-27 Score=201.18 Aligned_cols=77 Identities=39% Similarity=0.702 Sum_probs=69.2
Q ss_pred ccccccCCCCCCCceeEEEEecCCCC------eeeecccCCCCCCCCCeEEEccccccCCCCccEEEeccCCCCCCCCCc
Q 029419 114 FPSCLKQPGPREFPHQCLIRRNKKTS------TFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNA 187 (193)
Q Consensus 114 fp~~LkqPgPrd~~iQCfIkRdK~g~------tY~LyL~l~~~~~e~gKFLLAARKrkrs~tSnYiISld~~DlSR~S~~ 187 (193)
+..||+||||+|++|||+|+|||+|. +|+|||+.. .++++|||||||++++|++|||||+|++||||+|++
T Consensus 10 ~~~Fl~qP~Pr~~~iqC~IkR~k~~~~~~l~~~Y~l~l~~~---~gk~kfLLaArK~r~~~~~~yiIS~~~~d~sr~s~~ 86 (265)
T d1c8za_ 10 LEEFALRPAPQGITIKCRITRDKKGMDRGMFPTYFLHLDRE---DGKKVFLLAGRKRKKSKTSNYLISVDPTDLSRGGDS 86 (265)
T ss_dssp HHHHHHCCCCTTCCEEEEEEECSSCSSSSCCCEEEEEEECT---TSCEEEEEEEEEEESSSSEEEEEESCHHHHTTTCCC
T ss_pred HHHHhcCCCCCCCcEEEEEEEccCCCcCccceeEEEEEccC---CCceeEEEEEeeecCCCcceEEEEccHHHhcccccc
Confidence 67899999999999999999999874 677777632 245579999999999999999999999999999999
Q ss_pred ceeecC
Q 029419 188 YVGKLR 193 (193)
Q Consensus 188 yVGKLR 193 (193)
||||||
T Consensus 87 yvGKlr 92 (265)
T d1c8za_ 87 YIGKLR 92 (265)
T ss_dssp CSEEEE
T ss_pred eeEEee
Confidence 999997
No 2
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.56 E-value=7.6e-09 Score=64.60 Aligned_cols=36 Identities=31% Similarity=0.586 Sum_probs=32.8
Q ss_pred CCCCCHHHHHHHHhhhhcccCCCCcccceeeecccchhHHHHHH
Q 029419 57 WAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITK 100 (193)
Q Consensus 57 Wa~lPpELL~dIi~Rve~se~~wP~r~~vvaca~VCr~WR~i~k 100 (193)
|.+||+|++..|+..| |. ++++.|+.|||+|++++.
T Consensus 1 f~~LP~eil~~If~~L-------~~-~dl~~~~~Vcr~w~~l~~ 36 (41)
T d1fs1a1 1 WDSLPDELLLGIFSCL-------CL-PELLKVSGVCKRWYRLAS 36 (41)
T ss_dssp CCSSCHHHHHHHHTTS-------CG-GGHHHHHTTCHHHHHHHT
T ss_pred CCcCCHHHHHHHHHcC-------CH-HHHHHHHHHHHHHHHHhC
Confidence 8899999999999999 54 489999999999999875
No 3
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.94 E-value=8.4e-07 Score=62.00 Aligned_cols=41 Identities=20% Similarity=0.333 Sum_probs=34.9
Q ss_pred CCCCCCCCCHHHHHHHHhhhhcccCCCCcccceeeecccchhHHHHHHh
Q 029419 53 SSGSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKD 101 (193)
Q Consensus 53 ~~~~Wa~lPpELL~dIi~Rve~se~~wP~r~~vvaca~VCr~WR~i~ke 101 (193)
+..-=+.||+|++..|+..| +. +++++|++|||+|++++.+
T Consensus 15 ~~D~i~~LP~Eil~~Ils~L-------d~-~dL~~~~~vcr~w~~l~~~ 55 (102)
T d2ovrb1 15 QRDFISLLPKELALYVLSFL-------EP-KDLLQAAQTCRYWRILAED 55 (102)
T ss_dssp CCSTTTSSCHHHHHHHHTTS-------CH-HHHHHHTTSCHHHHHHHTC
T ss_pred ccCChhhCCHHHHHHHHHcC-------CH-HHHHHHHHHHHHHHHHHCC
Confidence 34456779999999999999 44 5999999999999999865
No 4
>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=97.72 E-value=2e-06 Score=60.66 Aligned_cols=37 Identities=16% Similarity=0.316 Sum_probs=32.4
Q ss_pred CCCCCCHHHHHHHHhhhhcccCCCCcccceeeecccchhHHHHHH
Q 029419 56 SWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITK 100 (193)
Q Consensus 56 ~Wa~lPpELL~dIi~Rve~se~~wP~r~~vvaca~VCr~WR~i~k 100 (193)
-.++||+||+..|+..| +. ++++.|+.|||+|+.++.
T Consensus 5 ~~~~LP~Ell~~I~s~L-------d~-~dL~~~s~Vcr~W~~~~~ 41 (100)
T d1nexb1 5 LITSLPFEISLKIFNYL-------QF-EDIINSLGVSQNWNKIIR 41 (100)
T ss_dssp HHHHSCHHHHHHHHTTS-------CH-HHHHHHTTTCHHHHHHHH
T ss_pred chhhCCHHHHHHHHHCC-------CH-HHHHHHHHHHHHHHHHHH
Confidence 35679999999999999 44 589999999999999874
No 5
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.98 E-value=6.9e-05 Score=53.69 Aligned_cols=36 Identities=25% Similarity=0.569 Sum_probs=30.8
Q ss_pred CCCC----HHHHHHHHhhhhcccCCCCcccceeeecccchhHHHHHHh
Q 029419 58 AGLL----PELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKD 101 (193)
Q Consensus 58 a~lP----pELL~dIi~Rve~se~~wP~r~~vvaca~VCr~WR~i~ke 101 (193)
++|| +|++..|+..|+. +++..|+.|||.|++++.+
T Consensus 12 ~~LP~~l~~EI~~~Ils~Ld~--------~dL~~~s~Vck~W~~l~~d 51 (118)
T d1p22a1 12 TALPARGLDHIAENILSYLDA--------KSLCAAELVCKEWYRVTSD 51 (118)
T ss_dssp HHTGGGTCHHHHHHHHTTCCH--------HHHHHHHHHCHHHHHHHHH
T ss_pred HHCCCCChHHHHHHHHHcCCH--------HHHHHHHHHHHHHHHHHcC
Confidence 4566 6999999999943 5899999999999999875
No 6
>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.65 E-value=40 Score=21.50 Aligned_cols=37 Identities=19% Similarity=0.289 Sum_probs=24.4
Q ss_pred ccccccccccccCCCC---CC--CceeEEEEecCCCCeeeeccc
Q 029419 108 LSGKITFPSCLKQPGP---RE--FPHQCLIRRNKKTSTFYLYLA 146 (193)
Q Consensus 108 ~~Gkitfp~~LkqPgP---rd--~~iQCfIkRdK~g~tY~LyL~ 146 (193)
+.|.+.=|..-.+|++ .| .+++|.... .+.+|.||-+
T Consensus 1 ~~G~lpkPsLsa~P~~~V~~G~~VTL~C~~~~--~~~~f~l~k~ 42 (99)
T d1ucta1 1 QEGDFPMPFISAKSSPVIPLDGSVKIQCQAIR--EAYLTQLMII 42 (99)
T ss_dssp CGGGSCCCCEEESSCSEEETTCCEEEEECCCT--TCSEEEEEEE
T ss_pred CCCCCCCCEEEecCCCceeCCCeEEEEEcCCC--CCcEEEEEEC
Confidence 3566666666667766 23 599996542 3468999876
No 7
>d2iqia1 c.51.6.2 (A:32-209) Hypothetical protein XCC0632 {Xanthomonas campestris pv. campestris [TaxId: 340]}
Probab=22.26 E-value=12 Score=27.00 Aligned_cols=23 Identities=22% Similarity=0.492 Sum_probs=19.0
Q ss_pred CCCCCCCCCHHHHHHHHhh-hhcc
Q 029419 53 SSGSWAGLLPELLGEIIRR-VETT 75 (193)
Q Consensus 53 ~~~~Wa~lPpELL~dIi~R-ve~s 75 (193)
...+|++.|++++.+.|.+ |+.+
T Consensus 52 ~~~rWa~~~~~~l~~~L~~~L~~~ 75 (178)
T d2iqia1 52 HGAGWAQPATDMLEDSVVRAFEDS 75 (178)
T ss_dssp TTEEESSCHHHHHHHHHHHHHHTT
T ss_pred cCCccccCHHHHHHHHHHHHHHhc
Confidence 6788999999999998876 6543
No 8
>d1gpma3 d.52.2.1 (A:405-525) GMP synthetase C-terminal dimerisation domain {Escherichia coli [TaxId: 562]}
Probab=19.06 E-value=24 Score=25.44 Aligned_cols=18 Identities=33% Similarity=0.726 Sum_probs=16.0
Q ss_pred CCCCCCCHHHHHHHHhhh
Q 029419 55 GSWAGLLPELLGEIIRRV 72 (193)
Q Consensus 55 ~~Wa~lPpELL~dIi~Rv 72 (193)
-.|+.+|.|+|..|-+|+
T Consensus 79 A~~~~~p~~~L~~is~rI 96 (121)
T d1gpma3 79 AHWAHLPYDFLGRVSNRI 96 (121)
T ss_dssp EEECCCCHHHHHHHHHHH
T ss_pred ccCccCCHHHHHHHHHHH
Confidence 469999999999998886
No 9
>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.26 E-value=52 Score=21.14 Aligned_cols=19 Identities=11% Similarity=0.086 Sum_probs=13.7
Q ss_pred CceeEEEEecCCCCeeeeccc
Q 029419 126 FPHQCLIRRNKKTSTFYLYLA 146 (193)
Q Consensus 126 ~~iQCfIkRdK~g~tY~LyL~ 146 (193)
.+++|... -.+.+|.||-+
T Consensus 21 VTL~C~~~--~~~~~f~L~k~ 39 (95)
T d1olla1 21 VTICCQGN--YGAVEYQLHFE 39 (95)
T ss_dssp EEEEEECC--TTCCEEEEEET
T ss_pred EEEEEecC--CCccEEEEEEC
Confidence 48999753 34578999975
No 10
>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=15.89 E-value=1.1e+02 Score=21.38 Aligned_cols=38 Identities=16% Similarity=0.242 Sum_probs=25.3
Q ss_pred CeEEEccccc-cCCCCccEEEeccCCCCCCCCCcceeec
Q 029419 155 GKFLLAARRY-RRGAHSEYIISLDAGDLSQGSNAYVGKL 192 (193)
Q Consensus 155 gKFLLAARKr-krs~tSnYiISld~~DlSR~S~~yVGKL 192 (193)
...+|++++. +.+.+++|.|.+....---+..+-+|++
T Consensus 98 ~~g~v~~~~~~~~s~~sqFfIt~~~~p~ld~~~tVFG~V 136 (171)
T d1w74a_ 98 KPYLLAMANAGPGTNGSQFFITVGKTPHLNRRHTIFGEV 136 (171)
T ss_dssp SSSEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEE
T ss_pred CCEEEEEEecCCCCCCcceEeeccCCCccccccEEEEEE
Confidence 3445555444 4567899999998775333556777875
Done!