Query 029420
Match_columns 193
No_of_seqs 189 out of 1257
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 12:37:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029420.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029420hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0546 Gph Predicted phosphat 99.8 7.6E-20 1.7E-24 151.4 12.7 119 1-171 3-126 (220)
2 PRK13226 phosphoglycolate phos 99.7 1.5E-16 3.3E-21 132.1 11.9 117 1-171 11-132 (229)
3 TIGR03351 PhnX-like phosphonat 99.6 2.1E-15 4.5E-20 123.6 12.7 120 2-172 1-125 (220)
4 PRK13225 phosphoglycolate phos 99.6 2.1E-15 4.5E-20 129.4 12.1 113 2-171 62-179 (273)
5 PRK13288 pyrophosphatase PpaX; 99.6 2.8E-15 6.2E-20 122.5 11.9 113 1-171 2-119 (214)
6 PRK13223 phosphoglycolate phos 99.6 3.8E-15 8.3E-20 127.3 12.6 122 1-171 12-138 (272)
7 PRK11587 putative phosphatase; 99.6 5.3E-15 1.1E-19 121.7 11.8 114 1-171 2-120 (218)
8 PLN03243 haloacid dehalogenase 99.6 1E-14 2.2E-19 124.3 12.4 117 2-171 24-146 (260)
9 TIGR01449 PGP_bact 2-phosphogl 99.6 6E-15 1.3E-19 119.8 10.5 117 5-171 1-122 (213)
10 PLN02770 haloacid dehalogenase 99.6 1.1E-14 2.4E-19 122.6 11.7 120 1-171 21-145 (248)
11 PRK13478 phosphonoacetaldehyde 99.6 1.8E-14 3.8E-19 122.2 12.4 127 2-171 4-138 (267)
12 TIGR01422 phosphonatase phosph 99.6 3.4E-14 7.3E-19 119.3 12.5 127 2-171 2-136 (253)
13 PLN02575 haloacid dehalogenase 99.6 4.5E-14 9.7E-19 126.2 12.6 117 3-172 132-254 (381)
14 PRK11590 hypothetical protein; 99.6 2.5E-14 5.5E-19 117.6 9.9 121 3-172 7-134 (211)
15 PRK13222 phosphoglycolate phos 99.5 9.3E-14 2E-18 113.6 13.1 120 2-171 6-130 (226)
16 TIGR01990 bPGM beta-phosphoglu 99.5 2.1E-13 4.5E-18 108.3 12.3 119 4-171 1-122 (185)
17 TIGR02009 PGMB-YQAB-SF beta-ph 99.5 3.2E-13 7E-18 107.2 13.2 120 2-171 1-123 (185)
18 TIGR01454 AHBA_synth_RP 3-amin 99.5 1.2E-13 2.7E-18 112.1 10.8 107 5-171 1-112 (205)
19 PRK10826 2-deoxyglucose-6-phos 99.5 2.8E-13 6E-18 111.5 12.0 119 1-171 6-129 (222)
20 PLN02779 haloacid dehalogenase 99.5 2.1E-13 4.6E-18 117.4 11.3 134 3-171 41-181 (286)
21 PRK06698 bifunctional 5'-methy 99.5 2.5E-13 5.5E-18 123.8 11.4 123 1-171 240-367 (459)
22 TIGR01548 HAD-SF-IA-hyp1 haloa 99.4 4.8E-13 1E-17 108.3 9.4 126 3-172 1-144 (197)
23 PLN02940 riboflavin kinase 99.4 1.3E-12 2.9E-17 116.9 12.2 112 3-169 12-128 (382)
24 PRK10563 6-phosphogluconate ph 99.4 2.1E-12 4.6E-17 105.9 11.6 115 2-171 4-122 (221)
25 PRK10725 fructose-1-P/6-phosph 99.4 5.6E-12 1.2E-16 100.6 11.9 114 3-171 6-123 (188)
26 COG0637 Predicted phosphatase/ 99.4 7.7E-12 1.7E-16 103.9 12.5 123 1-176 1-129 (221)
27 PHA02597 30.2 hypothetical pro 99.4 2.8E-12 6E-17 103.6 8.6 106 1-171 1-110 (197)
28 PRK10748 flavin mononucleotide 99.3 6.9E-12 1.5E-16 104.8 9.9 126 3-162 11-138 (238)
29 TIGR02253 CTE7 HAD superfamily 99.3 1.3E-11 2.7E-16 100.9 11.1 35 137-171 92-131 (221)
30 TIGR02252 DREG-2 REG-2-like, H 99.3 1.1E-11 2.4E-16 100.2 10.6 129 3-171 1-141 (203)
31 PRK09449 dUMP phosphatase; Pro 99.3 1.9E-11 4E-16 100.4 10.4 35 137-171 93-131 (224)
32 PLN02919 haloacid dehalogenase 99.3 1.9E-11 4E-16 121.6 12.0 120 2-172 75-199 (1057)
33 TIGR01993 Pyr-5-nucltdase pyri 99.2 2.4E-11 5.2E-16 97.1 6.9 35 137-171 82-118 (184)
34 PLN02954 phosphoserine phospha 99.2 1.1E-10 2.4E-15 95.8 9.3 36 138-173 83-123 (224)
35 PRK09552 mtnX 2-hydroxy-3-keto 99.2 8.7E-11 1.9E-15 96.9 7.8 35 137-171 72-111 (219)
36 TIGR02254 YjjG/YfnB HAD superf 99.2 2.9E-10 6.4E-15 92.6 10.7 30 2-31 1-30 (224)
37 TIGR01672 AphA HAD superfamily 99.1 9.9E-11 2.1E-15 98.8 7.1 40 134-173 109-157 (237)
38 TIGR01549 HAD-SF-IA-v1 haloaci 99.1 3.7E-10 8.1E-15 87.4 9.6 28 4-31 1-28 (154)
39 PF13419 HAD_2: Haloacid dehal 99.1 1.1E-10 2.5E-15 90.0 5.8 109 5-172 1-115 (176)
40 TIGR01545 YfhB_g-proteo haloac 99.1 1.7E-09 3.7E-14 89.4 12.5 55 109-171 72-132 (210)
41 TIGR02247 HAD-1A3-hyp Epoxide 99.1 3.2E-10 7E-15 92.3 6.5 26 137-162 92-120 (211)
42 TIGR01491 HAD-SF-IB-PSPlk HAD- 99.0 4.9E-10 1.1E-14 89.8 7.1 36 137-172 78-118 (201)
43 TIGR01428 HAD_type_II 2-haloal 99.0 5.5E-10 1.2E-14 90.1 7.1 35 138-172 91-130 (198)
44 PRK13582 thrH phosphoserine ph 99.0 3.6E-09 7.7E-14 85.5 9.2 35 137-172 66-105 (205)
45 PRK14988 GMP/IMP nucleotidase; 99.0 3.6E-09 7.7E-14 87.9 9.3 36 136-171 90-130 (224)
46 PLN02811 hydrolase 99.0 8.3E-09 1.8E-13 85.0 11.0 101 9-162 1-104 (220)
47 TIGR01493 HAD-SF-IA-v2 Haloaci 98.9 2.9E-09 6.3E-14 84.0 7.3 31 137-171 88-120 (175)
48 TIGR00338 serB phosphoserine p 98.9 5.3E-09 1.1E-13 85.5 8.4 34 138-171 84-122 (219)
49 PRK09456 ?-D-glucose-1-phospha 98.7 1.2E-07 2.6E-12 76.8 8.4 24 139-162 84-110 (199)
50 TIGR01489 DKMTPPase-SF 2,3-dik 98.6 2.2E-07 4.8E-12 73.4 9.5 34 138-171 71-109 (188)
51 TIGR01509 HAD-SF-IA-v3 haloaci 98.6 1.7E-07 3.6E-12 73.7 7.7 32 138-169 84-119 (183)
52 TIGR02137 HSK-PSP phosphoserin 98.6 2.4E-07 5.1E-12 76.3 8.4 37 138-174 67-107 (203)
53 TIGR01490 HAD-SF-IB-hyp1 HAD-s 98.6 7.7E-07 1.7E-11 71.7 11.3 55 109-172 66-125 (202)
54 KOG2914 Predicted haloacid-hal 98.5 3.2E-06 7E-11 70.8 12.1 105 3-162 11-118 (222)
55 COG0560 SerB Phosphoserine pho 98.4 1.8E-06 4E-11 71.6 10.0 37 138-174 76-117 (212)
56 TIGR03333 salvage_mtnX 2-hydro 98.4 6.2E-07 1.3E-11 73.7 6.7 34 138-171 69-107 (214)
57 PRK11009 aphA acid phosphatase 98.3 4.2E-07 9.1E-12 76.8 3.9 41 132-172 107-156 (237)
58 TIGR01488 HAD-SF-IB Haloacid D 98.3 1.4E-06 2.9E-11 68.5 6.4 35 138-172 72-111 (177)
59 PRK11133 serB phosphoserine ph 98.3 2.9E-06 6.3E-11 74.6 7.8 35 138-172 180-219 (322)
60 COG1011 Predicted hydrolase (H 98.2 1.9E-05 4E-10 64.4 10.5 40 137-176 97-141 (229)
61 TIGR01685 MDP-1 magnesium-depe 98.1 3.4E-06 7.3E-11 68.2 4.0 36 137-172 43-84 (174)
62 TIGR01662 HAD-SF-IIIA HAD-supe 98.0 7.6E-06 1.7E-10 61.8 4.4 25 138-162 24-51 (132)
63 PF06888 Put_Phosphatase: Puta 97.9 7.8E-05 1.7E-09 63.0 8.6 36 137-172 69-111 (234)
64 TIGR01691 enolase-ppase 2,3-di 97.8 0.00012 2.7E-09 61.1 9.3 41 130-171 87-132 (220)
65 PF00702 Hydrolase: haloacid d 97.7 4.6E-05 1E-09 61.0 4.7 36 137-172 125-165 (215)
66 PRK08942 D,D-heptose 1,7-bisph 97.6 3.5E-05 7.6E-10 61.6 2.6 25 138-162 28-55 (181)
67 PRK08238 hypothetical protein; 97.6 0.00029 6.4E-09 65.2 8.2 34 139-172 72-110 (479)
68 PF12710 HAD: haloacid dehalog 97.5 0.00045 9.7E-09 54.6 7.5 34 139-172 85-127 (192)
69 TIGR01533 lipo_e_P4 5'-nucleot 97.4 0.00048 1E-08 59.2 7.4 35 137-171 116-158 (266)
70 TIGR01663 PNK-3'Pase polynucle 97.4 0.00017 3.7E-09 67.4 4.4 23 140-162 198-223 (526)
71 KOG3120 Predicted haloacid deh 97.3 0.0029 6.3E-08 53.2 10.5 109 2-177 13-129 (256)
72 PF06941 NT5C: 5' nucleotidase 97.2 0.0017 3.7E-08 52.4 7.6 28 135-162 69-99 (191)
73 PRK01158 phosphoglycolate phos 96.9 0.00056 1.2E-08 56.0 2.3 30 2-31 3-32 (230)
74 PRK15126 thiamin pyrimidine py 96.8 0.00067 1.4E-08 57.4 2.3 31 1-31 1-31 (272)
75 PRK10976 putative hydrolase; P 96.8 0.00072 1.6E-08 56.8 2.2 31 1-31 1-31 (266)
76 TIGR01261 hisB_Nterm histidino 96.6 0.0014 3.1E-08 52.0 2.8 25 137-161 27-54 (161)
77 PRK10530 pyridoxal phosphate ( 96.6 0.0011 2.5E-08 55.5 2.3 31 1-31 2-32 (272)
78 KOG3085 Predicted hydrolase (H 96.6 0.014 3.1E-07 49.4 8.6 138 3-172 8-150 (237)
79 PTZ00174 phosphomannomutase; P 96.5 0.0014 3.1E-08 55.0 2.1 29 3-31 6-34 (247)
80 PRK10513 sugar phosphate phosp 96.5 0.0015 3.3E-08 54.9 2.2 30 2-31 3-32 (270)
81 TIGR02250 FCP1_euk FCP1-like p 96.5 0.0019 4.2E-08 51.1 2.6 39 136-174 55-97 (156)
82 TIGR01664 DNA-3'-Pase DNA 3'-p 96.4 0.0029 6.2E-08 50.4 3.4 24 139-162 42-68 (166)
83 TIGR00213 GmhB_yaeD D,D-heptos 96.4 0.0042 9.1E-08 49.4 4.2 25 138-162 25-52 (176)
84 PRK00192 mannosyl-3-phosphogly 96.4 0.002 4.3E-08 54.8 2.4 31 1-31 3-33 (273)
85 TIGR02244 HAD-IG-Ncltidse HAD 96.3 0.0056 1.2E-07 54.5 4.9 39 133-171 178-221 (343)
86 COG0561 Cof Predicted hydrolas 96.3 0.0022 4.8E-08 53.9 2.2 31 1-31 2-32 (264)
87 TIGR01681 HAD-SF-IIIC HAD-supe 96.3 0.0022 4.8E-08 48.7 1.9 34 139-172 29-68 (128)
88 smart00577 CPDc catalytic doma 96.3 0.0043 9.4E-08 48.2 3.5 37 137-173 43-83 (148)
89 TIGR01487 SPP-like sucrose-pho 96.2 0.0032 6.9E-08 51.4 2.5 30 2-31 1-30 (215)
90 TIGR01482 SPP-subfamily Sucros 96.1 0.0027 5.9E-08 51.7 1.7 27 5-31 1-27 (225)
91 PLN02423 phosphomannomutase 95.9 0.0043 9.3E-08 52.3 2.1 29 3-31 8-36 (245)
92 TIGR01459 HAD-SF-IIA-hyp4 HAD- 95.9 0.0088 1.9E-07 50.0 3.6 37 137-173 22-65 (242)
93 PLN02177 glycerol-3-phosphate 95.6 0.075 1.6E-06 49.6 8.9 52 109-170 89-142 (497)
94 PRK05446 imidazole glycerol-ph 95.4 0.016 3.4E-07 51.8 3.8 27 135-161 26-55 (354)
95 PLN02887 hydrolase family prot 95.4 0.0095 2.1E-07 56.5 2.5 31 1-31 307-337 (580)
96 TIGR01689 EcbF-BcbF capsule bi 95.4 0.0085 1.8E-07 46.0 1.8 14 3-16 2-15 (126)
97 PF03767 Acid_phosphat_B: HAD 95.4 0.019 4E-07 48.2 4.0 25 138-162 114-141 (229)
98 PRK06769 hypothetical protein; 95.4 0.011 2.4E-07 47.1 2.4 25 138-162 27-54 (173)
99 PF08282 Hydrolase_3: haloacid 95.3 0.0082 1.8E-07 48.6 1.5 27 5-31 1-27 (254)
100 PRK03669 mannosyl-3-phosphogly 95.3 0.011 2.3E-07 50.2 2.2 30 2-31 7-36 (271)
101 TIGR01656 Histidinol-ppas hist 95.3 0.0086 1.9E-07 46.3 1.4 25 138-162 26-53 (147)
102 PRK12702 mannosyl-3-phosphogly 95.1 0.013 2.8E-07 51.2 2.2 29 3-31 2-30 (302)
103 TIGR01681 HAD-SF-IIIC HAD-supe 95.0 0.028 6.1E-07 42.6 3.6 14 3-16 1-14 (128)
104 TIGR00099 Cof-subfamily Cof su 95.0 0.013 2.7E-07 49.0 1.8 28 4-31 1-28 (256)
105 PHA02530 pseT polynucleotide k 94.8 0.034 7.3E-07 47.5 4.0 37 137-173 185-226 (300)
106 TIGR01484 HAD-SF-IIB HAD-super 94.7 0.016 3.4E-07 46.6 1.6 28 4-31 1-29 (204)
107 KOG1615 Phosphoserine phosphat 94.5 0.35 7.5E-06 40.2 8.9 39 137-175 86-129 (227)
108 cd01427 HAD_like Haloacid deha 94.2 0.019 4.1E-07 41.5 0.9 15 4-18 1-15 (139)
109 TIGR01544 HAD-SF-IE haloacid d 94.2 0.19 4.2E-06 43.5 7.2 64 94-171 90-158 (277)
110 TIGR01684 viral_ppase viral ph 94.2 0.033 7.2E-07 48.7 2.4 30 2-31 126-158 (301)
111 TIGR01686 FkbH FkbH-like domai 94.1 0.035 7.5E-07 48.5 2.5 34 137-170 29-67 (320)
112 PRK09484 3-deoxy-D-manno-octul 94.1 0.024 5.3E-07 45.5 1.3 15 2-16 21-35 (183)
113 smart00775 LNS2 LNS2 domain. T 94.0 0.029 6.3E-07 44.3 1.7 14 4-17 1-14 (157)
114 TIGR01456 CECR5 HAD-superfamil 93.9 0.041 9E-07 48.1 2.5 27 4-31 2-28 (321)
115 TIGR01668 YqeG_hyp_ppase HAD s 93.9 0.067 1.4E-06 42.5 3.5 34 138-171 42-81 (170)
116 TIGR01680 Veg_Stor_Prot vegeta 93.8 0.24 5.3E-06 42.9 6.9 26 137-162 143-171 (275)
117 COG4359 Uncharacterized conser 93.7 0.49 1.1E-05 39.0 8.2 36 137-172 71-111 (220)
118 TIGR02463 MPGP_rel mannosyl-3- 93.6 0.041 9E-07 44.8 1.9 14 4-17 1-14 (221)
119 PHA03398 viral phosphatase sup 93.6 0.046 1E-06 47.8 2.3 30 2-31 128-160 (303)
120 TIGR01675 plant-AP plant acid 93.5 0.26 5.6E-06 41.6 6.5 26 137-162 118-146 (229)
121 PF03031 NIF: NLI interacting 93.5 0.031 6.6E-07 43.4 0.9 16 3-18 1-16 (159)
122 TIGR01656 Histidinol-ppas hist 93.4 0.041 8.9E-07 42.4 1.5 16 3-18 1-16 (147)
123 TIGR02461 osmo_MPG_phos mannos 93.4 0.039 8.5E-07 45.9 1.5 27 4-31 1-27 (225)
124 PF12689 Acid_PPase: Acid Phos 93.4 0.11 2.3E-06 41.9 3.9 37 137-173 43-85 (169)
125 TIGR01664 DNA-3'-Pase DNA 3'-p 93.3 0.045 9.7E-07 43.5 1.6 16 2-17 13-28 (166)
126 PF13344 Hydrolase_6: Haloacid 93.2 0.11 2.3E-06 38.0 3.4 26 137-162 12-40 (101)
127 TIGR01486 HAD-SF-IIB-MPGP mann 93.2 0.048 1E-06 45.7 1.7 15 4-18 1-15 (256)
128 PRK10444 UMP phosphatase; Prov 93.0 0.082 1.8E-06 44.8 2.8 23 2-24 1-26 (248)
129 TIGR01670 YrbI-phosphatas 3-de 92.9 0.046 1E-06 42.7 1.2 15 2-16 1-15 (154)
130 PRK10187 trehalose-6-phosphate 92.7 0.07 1.5E-06 45.5 2.1 14 3-16 15-28 (266)
131 cd01427 HAD_like Haloacid deha 92.7 0.19 4.2E-06 36.1 4.1 35 137-171 22-61 (139)
132 TIGR01512 ATPase-IB2_Cd heavy 92.4 0.11 2.3E-06 48.7 3.0 39 135-173 358-402 (536)
133 PHA03398 viral phosphatase sup 92.3 0.12 2.6E-06 45.3 2.9 33 141-173 150-187 (303)
134 PLN02645 phosphoglycolate phos 92.2 0.088 1.9E-06 45.8 2.1 59 112-171 18-81 (311)
135 PF08645 PNK3P: Polynucleotide 92.0 0.078 1.7E-06 41.9 1.4 16 3-18 1-16 (159)
136 TIGR02251 HIF-SF_euk Dullard-l 91.9 0.17 3.6E-06 40.0 3.1 36 139-174 42-81 (162)
137 TIGR02726 phenyl_P_delta pheny 91.8 0.085 1.8E-06 42.3 1.4 15 2-16 7-21 (169)
138 TIGR02471 sucr_syn_bact_C sucr 91.6 0.17 3.7E-06 41.8 3.1 25 4-29 1-25 (236)
139 PRK14502 bifunctional mannosyl 91.5 0.12 2.6E-06 50.0 2.3 30 2-31 416-445 (694)
140 TIGR01525 ATPase-IB_hvy heavy 91.4 0.18 3.8E-06 47.4 3.3 38 136-173 381-424 (556)
141 TIGR01684 viral_ppase viral ph 91.3 0.17 3.7E-06 44.3 2.8 32 141-172 148-184 (301)
142 TIGR00685 T6PP trehalose-phosp 91.1 0.091 2E-06 44.0 0.9 14 3-16 4-17 (244)
143 TIGR01485 SPP_plant-cyano sucr 91.0 0.24 5.2E-06 41.3 3.5 28 4-31 3-33 (249)
144 TIGR01458 HAD-SF-IIA-hyp3 HAD- 90.9 0.17 3.8E-06 42.8 2.5 25 138-162 119-146 (257)
145 PLN02499 glycerol-3-phosphate 90.7 1.5 3.3E-05 41.0 8.6 53 109-171 75-129 (498)
146 TIGR01452 PGP_euk phosphoglyco 90.2 0.14 3E-06 43.8 1.3 24 138-162 142-168 (279)
147 TIGR01457 HAD-SF-IIA-hyp2 HAD- 90.1 0.14 3.1E-06 43.1 1.2 29 2-31 1-29 (249)
148 COG0241 HisB Histidinol phosph 89.9 0.41 9E-06 39.0 3.8 48 139-189 31-82 (181)
149 PLN02645 phosphoglycolate phos 89.6 0.19 4E-06 43.8 1.7 29 2-31 28-56 (311)
150 COG1778 Low specificity phosph 89.6 0.18 3.9E-06 40.4 1.4 17 1-17 7-23 (170)
151 PF12689 Acid_PPase: Acid Phos 89.6 0.2 4.3E-06 40.4 1.6 14 2-15 3-16 (169)
152 COG4229 Predicted enolase-phos 89.3 1.5 3.2E-05 36.3 6.5 42 126-168 91-136 (229)
153 PF13344 Hydrolase_6: Haloacid 89.1 0.21 4.5E-06 36.5 1.3 18 5-22 1-18 (101)
154 TIGR01460 HAD-SF-IIA Haloacid 88.7 0.18 4E-06 42.0 0.9 26 5-31 1-26 (236)
155 smart00577 CPDc catalytic doma 88.7 0.26 5.6E-06 38.1 1.7 16 3-18 3-18 (148)
156 PF05116 S6PP: Sucrose-6F-phos 87.2 0.68 1.5E-05 39.0 3.5 28 2-29 2-29 (247)
157 TIGR01670 YrbI-phosphatas 3-de 86.9 0.72 1.6E-05 35.9 3.2 29 144-172 36-66 (154)
158 TIGR00213 GmhB_yaeD D,D-heptos 86.8 0.37 8E-06 38.1 1.6 14 3-16 2-15 (176)
159 PLN02205 alpha,alpha-trehalose 86.8 0.64 1.4E-05 46.2 3.5 17 1-17 595-611 (854)
160 TIGR02245 HAD_IIID1 HAD-superf 86.7 0.36 7.9E-06 39.7 1.5 15 3-17 22-36 (195)
161 PLN03017 trehalose-phosphatase 86.5 0.44 9.5E-06 42.9 2.0 12 3-14 112-123 (366)
162 PRK14501 putative bifunctional 86.2 0.65 1.4E-05 45.1 3.2 13 3-15 493-505 (726)
163 PLN02151 trehalose-phosphatase 86.0 0.48 1E-05 42.5 2.0 29 3-31 99-132 (354)
164 COG1877 OtsB Trehalose-6-phosp 85.7 0.37 8E-06 41.6 1.1 17 2-18 18-34 (266)
165 COG0647 NagD Predicted sugar p 85.0 0.98 2.1E-05 39.0 3.4 31 136-166 21-55 (269)
166 TIGR01511 ATPase-IB1_Cu copper 84.9 0.81 1.8E-05 43.2 3.1 38 137-174 403-445 (562)
167 TIGR01261 hisB_Nterm histidino 83.7 0.59 1.3E-05 36.9 1.4 16 3-18 2-17 (161)
168 PF02358 Trehalose_PPase: Treh 83.0 0.92 2E-05 37.5 2.4 26 6-31 1-31 (235)
169 TIGR02726 phenyl_P_delta pheny 82.8 1.2 2.7E-05 35.6 2.9 24 149-172 47-72 (169)
170 TIGR02251 HIF-SF_euk Dullard-l 82.2 0.82 1.8E-05 36.0 1.7 15 3-17 2-16 (162)
171 PF08645 PNK3P: Polynucleotide 81.7 0.9 1.9E-05 35.9 1.7 24 139-162 29-55 (159)
172 COG4996 Predicted phosphatase 81.6 0.77 1.7E-05 36.0 1.3 16 3-18 1-16 (164)
173 KOG3109 Haloacid dehalogenase- 81.4 8.1 0.00017 32.8 7.3 43 138-180 99-145 (244)
174 PLN02580 trehalose-phosphatase 81.0 0.83 1.8E-05 41.4 1.5 15 3-17 120-134 (384)
175 COG0647 NagD Predicted sugar p 79.9 1.2 2.5E-05 38.6 1.9 22 3-24 9-30 (269)
176 KOG2134 Polynucleotide kinase 78.4 1 2.2E-05 41.0 1.1 20 3-22 76-95 (422)
177 PRK00192 mannosyl-3-phosphogly 77.4 2.5 5.4E-05 35.7 3.2 35 138-172 20-59 (273)
178 PRK10444 UMP phosphatase; Prov 76.8 3 6.5E-05 35.2 3.5 33 139-171 17-54 (248)
179 TIGR01459 HAD-SF-IIA-hyp4 HAD- 76.7 2.4 5.2E-05 35.2 2.9 31 140-171 139-174 (242)
180 TIGR01458 HAD-SF-IIA-hyp3 HAD- 76.1 3.5 7.7E-05 34.8 3.8 23 140-162 22-47 (257)
181 TIGR01452 PGP_euk phosphoglyco 75.9 3.5 7.7E-05 35.0 3.8 25 138-162 17-44 (279)
182 TIGR01668 YqeG_hyp_ppase HAD s 75.2 2.1 4.5E-05 33.8 2.0 15 2-16 25-39 (170)
183 COG3769 Predicted hydrolase (H 74.6 1.8 3.8E-05 36.8 1.5 15 1-15 6-20 (274)
184 PRK06769 hypothetical protein; 73.3 2 4.2E-05 34.1 1.5 11 3-13 5-15 (173)
185 PLN02382 probable sucrose-phos 72.5 2 4.4E-05 39.1 1.5 14 4-17 11-24 (413)
186 PF09419 PGP_phosphatase: Mito 71.6 5.3 0.00012 32.1 3.6 30 2-31 41-75 (168)
187 TIGR02250 FCP1_euk FCP1-like p 70.9 2.5 5.5E-05 33.2 1.6 21 3-23 7-27 (156)
188 PRK09484 3-deoxy-D-manno-octul 70.2 5 0.00011 32.0 3.2 25 148-172 60-86 (183)
189 PLN03063 alpha,alpha-trehalose 70.1 2.1 4.6E-05 42.3 1.2 16 3-18 508-523 (797)
190 TIGR01686 FkbH FkbH-like domai 69.6 2.6 5.6E-05 36.7 1.5 16 2-17 3-18 (320)
191 PLN03064 alpha,alpha-trehalose 68.3 2.4 5.1E-05 42.7 1.1 15 3-17 592-606 (934)
192 PRK05446 imidazole glycerol-ph 67.2 3.6 7.8E-05 36.9 1.9 17 1-17 1-17 (354)
193 TIGR01457 HAD-SF-IIA-hyp2 HAD- 66.3 6.6 0.00014 32.9 3.3 35 138-172 16-58 (249)
194 PF08235 LNS2: LNS2 (Lipin/Ned 65.8 3.3 7.1E-05 33.0 1.2 13 4-16 1-13 (157)
195 PRK10671 copA copper exporting 63.8 6.9 0.00015 38.7 3.3 37 137-173 648-689 (834)
196 TIGR02463 MPGP_rel mannosyl-3- 63.3 8.5 0.00018 31.1 3.3 31 142-172 19-54 (221)
197 TIGR01522 ATPase-IIA2_Ca golgi 63.3 6.6 0.00014 39.2 3.1 35 139-173 528-567 (884)
198 COG5663 Uncharacterized conser 62.8 3.4 7.4E-05 33.6 0.8 13 5-17 9-21 (194)
199 PF03031 NIF: NLI interacting 61.3 7.3 0.00016 29.9 2.5 36 138-173 35-74 (159)
200 COG4502 5'(3')-deoxyribonucleo 61.2 3.2 7E-05 32.9 0.4 30 1-31 2-31 (180)
201 COG2503 Predicted secreted aci 60.5 18 0.00038 31.2 4.7 26 137-162 120-148 (274)
202 PRK11426 hypothetical protein; 58.6 13 0.00029 28.8 3.4 57 52-129 46-103 (132)
203 smart00775 LNS2 LNS2 domain. T 57.9 20 0.00043 28.1 4.4 25 138-162 26-53 (157)
204 PRK11033 zntA zinc/cadmium/mer 56.8 11 0.00023 37.0 3.3 37 138-174 567-608 (741)
205 TIGR01460 HAD-SF-IIA Haloacid 55.6 18 0.0004 29.9 4.1 26 137-162 12-40 (236)
206 COG0241 HisB Histidinol phosph 55.3 7.2 0.00016 31.8 1.5 17 3-19 6-22 (181)
207 KOG4549 Magnesium-dependent ph 53.2 18 0.00039 28.1 3.3 34 138-171 43-82 (144)
208 TIGR02461 osmo_MPG_phos mannos 52.7 19 0.00041 29.7 3.7 34 138-171 14-52 (225)
209 COG5083 SMP2 Uncharacterized p 52.6 7.7 0.00017 36.1 1.4 15 2-16 375-389 (580)
210 KOG3189 Phosphomannomutase [Li 51.3 11 0.00024 31.6 2.1 28 4-31 13-40 (252)
211 PRK13762 tRNA-modifying enzyme 50.6 38 0.00083 29.8 5.5 26 137-162 140-168 (322)
212 PTZ00445 p36-lilke protein; Pr 50.1 7 0.00015 32.8 0.7 14 2-15 43-56 (219)
213 PHA02530 pseT polynucleotide k 49.6 10 0.00023 32.1 1.7 16 3-18 159-174 (300)
214 PF05761 5_nucleotid: 5' nucle 48.2 31 0.00067 32.0 4.7 34 141-174 185-223 (448)
215 PF05152 DUF705: Protein of un 47.5 11 0.00023 33.1 1.5 17 2-18 122-138 (297)
216 TIGR01487 SPP-like sucrose-pho 47.3 24 0.00052 28.4 3.4 33 139-171 18-55 (215)
217 PF08282 Hydrolase_3: haloacid 46.8 21 0.00045 28.4 3.0 33 139-171 15-52 (254)
218 PF08620 RPAP1_C: RPAP1-like, 46.5 7.3 0.00016 27.1 0.2 10 5-14 3-12 (73)
219 PRK12702 mannosyl-3-phosphogly 45.1 25 0.00055 30.9 3.4 35 138-172 17-56 (302)
220 KOG1605 TFIIF-interacting CTD 43.5 14 0.0003 31.9 1.6 17 2-18 89-105 (262)
221 COG2179 Predicted hydrolase of 42.8 14 0.00031 29.9 1.4 12 3-14 29-40 (175)
222 TIGR01116 ATPase-IIA1_Ca sarco 42.2 24 0.00053 35.4 3.2 34 139-172 537-575 (917)
223 PRK01158 phosphoglycolate phos 41.9 32 0.00069 27.7 3.4 32 140-171 21-57 (230)
224 TIGR02244 HAD-IG-Ncltidse HAD 40.5 15 0.00032 32.9 1.3 17 2-18 12-28 (343)
225 TIGR01482 SPP-subfamily Sucros 39.8 37 0.00081 27.1 3.5 33 140-172 16-53 (225)
226 PF03387 Herpes_UL46: Herpesvi 39.4 2E+02 0.0044 26.8 8.4 100 9-128 16-116 (444)
227 PRK03669 mannosyl-3-phosphogly 38.0 39 0.00085 28.3 3.5 32 140-171 25-61 (271)
228 PRK10530 pyridoxal phosphate ( 38.0 40 0.00087 27.8 3.5 32 140-171 21-57 (272)
229 cd01615 CIDE_N CIDE_N domain, 37.9 18 0.00039 25.5 1.1 15 4-18 42-56 (78)
230 KOG2882 p-Nitrophenyl phosphat 37.7 52 0.0011 29.0 4.2 28 134-162 34-64 (306)
231 smart00266 CAD Domains present 37.4 19 0.00041 25.2 1.1 15 4-18 40-54 (74)
232 cd06537 CIDE_N_B CIDE_N domain 37.2 19 0.00041 25.6 1.2 15 4-18 41-55 (81)
233 cd06539 CIDE_N_A CIDE_N domain 35.8 21 0.00046 25.2 1.2 15 4-18 42-56 (78)
234 TIGR00099 Cof-subfamily Cof su 35.4 45 0.00097 27.5 3.4 32 140-171 17-53 (256)
235 cd06536 CIDE_N_ICAD CIDE_N dom 35.4 21 0.00045 25.3 1.1 15 4-18 44-58 (80)
236 TIGR01484 HAD-SF-IIB HAD-super 35.1 40 0.00087 26.6 3.0 32 139-170 17-53 (204)
237 PF02017 CIDE-N: CIDE-N domain 34.9 22 0.00047 25.1 1.2 14 4-17 42-55 (78)
238 smart00497 IENR1 Intron encode 34.3 35 0.00076 21.0 2.0 25 3-31 3-27 (53)
239 PRK10513 sugar phosphate phosp 33.6 49 0.0011 27.4 3.3 30 142-171 23-57 (270)
240 PF06117 DUF957: Enterobacteri 33.5 65 0.0014 21.8 3.2 28 3-31 25-52 (65)
241 KOG1618 Predicted phosphatase 33.5 20 0.00044 32.1 1.0 27 4-31 37-63 (389)
242 PRK15126 thiamin pyrimidine py 33.0 44 0.00096 27.8 3.0 32 140-171 20-56 (272)
243 PF06189 5-nucleotidase: 5'-nu 31.7 25 0.00054 30.4 1.2 17 5-21 124-140 (264)
244 TIGR01486 HAD-SF-IIB-MPGP mann 31.4 67 0.0014 26.6 3.8 32 140-171 17-53 (256)
245 COG0561 Cof Predicted hydrolas 31.4 54 0.0012 27.1 3.2 34 139-172 20-58 (264)
246 PF07453 NUMOD1: NUMOD1 domain 30.0 45 0.00097 19.3 1.8 25 3-31 2-26 (37)
247 cd06538 CIDE_N_FSP27 CIDE_N do 29.3 30 0.00066 24.4 1.1 15 4-18 41-55 (79)
248 COG3882 FkbH Predicted enzyme 29.2 30 0.00065 32.7 1.4 15 2-16 222-236 (574)
249 PF08235 LNS2: LNS2 (Lipin/Ned 28.2 78 0.0017 25.1 3.5 24 139-162 27-53 (157)
250 TIGR01485 SPP_plant-cyano sucr 27.4 43 0.00094 27.6 2.0 29 142-170 24-57 (249)
251 PRK10976 putative hydrolase; P 27.3 68 0.0015 26.5 3.1 30 142-171 22-56 (266)
252 COG0731 Fe-S oxidoreductases [ 27.0 56 0.0012 28.7 2.6 27 136-162 89-119 (296)
253 TIGR01456 CECR5 HAD-superfamil 26.7 77 0.0017 27.6 3.5 26 137-162 14-46 (321)
254 COG2024 Phenylalanyl-tRNA synt 26.1 3.5E+02 0.0075 25.1 7.5 46 120-176 128-174 (536)
255 PRK10076 pyruvate formate lyas 26.1 76 0.0016 26.2 3.2 52 110-162 19-77 (213)
256 PF06901 FrpC: RTX iron-regula 25.5 36 0.00077 28.5 1.1 17 3-19 59-75 (271)
257 KOG2630 Enolase-phosphatase E- 25.4 1.1E+02 0.0024 26.2 4.0 52 126-178 111-168 (254)
258 COG2442 Uncharacterized conser 25.3 1.8E+02 0.004 20.3 4.5 29 87-125 43-71 (79)
259 cd04865 LigD_Pol_like_2 LigD_P 25.2 88 0.0019 26.5 3.4 29 3-31 100-131 (228)
260 cd04861 LigD_Pol_like LigD_Pol 25.1 88 0.0019 26.4 3.4 29 3-31 99-130 (227)
261 TIGR02778 ligD_pol DNA polymer 24.4 91 0.002 26.7 3.4 29 3-31 115-146 (245)
262 cd04862 PaeLigD_Pol_like PaeLi 23.8 97 0.0021 26.2 3.4 29 3-31 99-130 (227)
263 cd04863 MtLigD_Pol_like MtLigD 23.1 1E+02 0.0022 26.1 3.4 29 3-31 103-134 (231)
264 KOG2469 IMP-GMP specific 5'-nu 23.0 41 0.0009 30.9 1.1 24 150-173 212-237 (424)
265 PF01976 DUF116: Protein of un 21.9 1.1E+02 0.0023 24.3 3.1 32 143-174 74-108 (158)
266 cd04866 LigD_Pol_like_3 LigD_P 21.9 1.1E+02 0.0024 25.8 3.4 29 3-31 94-125 (223)
267 PF13720 Acetyltransf_11: Udp 20.9 88 0.0019 21.9 2.2 23 105-127 23-45 (83)
268 TIGR02471 sucr_syn_bact_C sucr 20.8 93 0.002 25.3 2.7 22 150-171 28-51 (236)
No 1
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=99.83 E-value=7.6e-20 Score=151.38 Aligned_cols=119 Identities=25% Similarity=0.384 Sum_probs=95.8
Q ss_pred CCceEEEecCcccccChHHHHHHHHHHHHHhcCCCCCCCCcchhhhhhhhhhhccchhhccHHHHHHHHHHhhhcccccc
Q 029420 1 MADLYALDFDGVLCDSCGESSLSAVKAAKVRWPGLFDGVDSVIEDWIVDQMHILRPVVETGYENLLLVRLLLEIRMPSIR 80 (193)
Q Consensus 1 ~~~~vlFDlDGTLvDS~~di~~a~~~al~~l~~~~~~gl~~~~~~~~~~~~~~vr~~Ig~G~~~ll~~~~l~~~~~~~~~ 80 (193)
|.++|+|||||||+||.+.+..+++.+++++ |++.. ....++.+||.|.+.++ .+.+...
T Consensus 3 ~~~~iiFDlDGTL~Ds~~~~~~~~~~~~~~~------~~~~~-------~~~~~~~~ig~~~~~~~-~~~~~~~------ 62 (220)
T COG0546 3 MIKAILFDLDGTLVDSAEDILRAFNAALAEL------GLPPL-------DEEEIRQLIGLGLDELI-ERLLGEA------ 62 (220)
T ss_pred CCCEEEEeCCCccccChHHHHHHHHHHHHHc------CCCCC-------CHHHHHHHhcCCHHHHH-HHHhccc------
Confidence 4589999999999999999999999999999 56644 25889999999999887 3554221
Q ss_pred cccccccccHHHHhhhhcchhhhhhhhcCCCHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCHHHHHH---hCCCcEEE
Q 029420 81 KSSVSEGLTVEGILENWSKIKPVIMEDWSENRDALVDLFGKVRDEWMDKDLTTWIGANRFYPGIPDALK---FASSRIYI 157 (193)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~e~~~~~~~~~r~~y~~~y~~~~~~~~~lypGV~e~L~---~~gi~laV 157 (193)
. .+...+..+.|+++|.+.|.+.. .+++||||.++|+ ++|++++|
T Consensus 63 --------~----------------------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~gv~e~L~~L~~~g~~l~i 110 (220)
T COG0546 63 --------D----------------------EEAAAELVERLREEFLTAYAELL--ESRLFPGVKELLAALKSAGYKLGI 110 (220)
T ss_pred --------c----------------------chhHHHHHHHHHHHHHHHHHhhc--cCccCCCHHHHHHHHHhCCCeEEE
Confidence 0 00011456677778877777665 5799999999999 99999999
Q ss_pred EcCcH--HHHHHHHHH
Q 029420 158 VTTKA--VSQMLYYES 171 (193)
Q Consensus 158 vTnK~--~a~~lL~~~ 171 (193)
+|||+ .++.+|+++
T Consensus 111 ~T~k~~~~~~~~l~~~ 126 (220)
T COG0546 111 VTNKPERELDILLKAL 126 (220)
T ss_pred EeCCcHHHHHHHHHHh
Confidence 99999 999999986
No 2
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=99.70 E-value=1.5e-16 Score=132.12 Aligned_cols=117 Identities=21% Similarity=0.269 Sum_probs=86.9
Q ss_pred CCceEEEecCcccccChHHHHHHHHHHHHHhcCCCCCCCCcchhhhhhhhhhhccchhhccHHHHHHHHHHhhhcccccc
Q 029420 1 MADLYALDFDGVLCDSCGESSLSAVKAAKVRWPGLFDGVDSVIEDWIVDQMHILRPVVETGYENLLLVRLLLEIRMPSIR 80 (193)
Q Consensus 1 ~~~~vlFDlDGTLvDS~~di~~a~~~al~~l~~~~~~gl~~~~~~~~~~~~~~vr~~Ig~G~~~ll~~~~l~~~~~~~~~ 80 (193)
|.++|+|||||||+||.+.+..+.+.+++++ |.+..+ .+.++..+|.|.+.++. ..+..
T Consensus 11 ~~k~viFD~DGTL~Ds~~~~~~a~~~~~~~~------g~~~~~-------~~~~~~~~g~~~~~~~~-~~~~~------- 69 (229)
T PRK13226 11 FPRAVLFDLDGTLLDSAPDMLATVNAMLAAR------GRAPIT-------LAQLRPVVSKGARAMLA-VAFPE------- 69 (229)
T ss_pred cCCEEEEcCcCccccCHHHHHHHHHHHHHHC------CCCCCC-------HHHHHHHhhhHHHHHHH-HHhcc-------
Confidence 7799999999999999999999999999999 666442 46788889988777652 22110
Q ss_pred cccccccccHHHHhhhhcchhhhhhhhcCCCHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCHHHHHH---hCCCcEEE
Q 029420 81 KSSVSEGLTVEGILENWSKIKPVIMEDWSENRDALVDLFGKVRDEWMDKDLTTWIGANRFYPGIPDALK---FASSRIYI 157 (193)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~e~~~~~~~~~r~~y~~~y~~~~~~~~~lypGV~e~L~---~~gi~laV 157 (193)
.+.+..++....+++.|.+.+ ....++|||+.++|+ ++|++++|
T Consensus 70 -----------------------------~~~~~~~~~~~~~~~~~~~~~----~~~~~~~pg~~~~L~~L~~~g~~l~i 116 (229)
T PRK13226 70 -----------------------------LDAAARDALIPEFLQRYEALI----GTQSQLFDGVEGMLQRLECAGCVWGI 116 (229)
T ss_pred -----------------------------CChHHHHHHHHHHHHHHHHhh----hhcCeeCCCHHHHHHHHHHCCCeEEE
Confidence 111222334455566655432 234689999999999 88999999
Q ss_pred EcCcH--HHHHHHHHH
Q 029420 158 VTTKA--VSQMLYYES 171 (193)
Q Consensus 158 vTnK~--~a~~lL~~~ 171 (193)
+||++ .+..+++++
T Consensus 117 ~Tn~~~~~~~~~l~~~ 132 (229)
T PRK13226 117 VTNKPEYLARLILPQL 132 (229)
T ss_pred ECCCCHHHHHHHHHHc
Confidence 99998 777788877
No 3
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=99.65 E-value=2.1e-15 Score=123.56 Aligned_cols=120 Identities=14% Similarity=0.130 Sum_probs=85.4
Q ss_pred CceEEEecCcccccChHHHHHHHHHHHHHhcCCCCCCCCcchhhhhhhhhhhccchhhccHHHHHHHHHHhhhccccccc
Q 029420 2 ADLYALDFDGVLCDSCGESSLSAVKAAKVRWPGLFDGVDSVIEDWIVDQMHILRPVVETGYENLLLVRLLLEIRMPSIRK 81 (193)
Q Consensus 2 ~~~vlFDlDGTLvDS~~di~~a~~~al~~l~~~~~~gl~~~~~~~~~~~~~~vr~~Ig~G~~~ll~~~~l~~~~~~~~~~ 81 (193)
.++|+|||||||+||.+.+..+.+.+++++ |.+..+ .+..+.++|.+...++ .+.+..
T Consensus 1 ~k~iiFD~DGTL~ds~~~~~~~~~~~~~~~------g~~~~~-------~~~~~~~~g~~~~~~~-~~~~~~-------- 58 (220)
T TIGR03351 1 ISLVVLDMAGTTVDEDGLVYRALRQAVTAA------GLSPTP-------EEVQSAWMGQSKIEAI-RALLAL-------- 58 (220)
T ss_pred CcEEEEecCCCeeccCchHHHHHHHHHHHc------CCCCCH-------HHHHHhhcCCCHHHHH-HHHHhc--------
Confidence 478999999999999999999999999998 565331 1222337787766655 222211
Q ss_pred ccccccccHHHHhhhhcchhhhhhhhcCCCHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCHHHHHH---hCCCcEEEE
Q 029420 82 SSVSEGLTVEGILENWSKIKPVIMEDWSENRDALVDLFGKVRDEWMDKDLTTWIGANRFYPGIPDALK---FASSRIYIV 158 (193)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~e~~~~~~~~~r~~y~~~y~~~~~~~~~lypGV~e~L~---~~gi~laVv 158 (193)
.|.+.+..++.+..|++.|.+.|.. ...++|||+.++|+ ++|++++|+
T Consensus 59 --------------------------~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~G~~~~L~~L~~~g~~~~iv 109 (220)
T TIGR03351 59 --------------------------DGADEAEAQAAFADFEERLAEAYDD---GPPVALPGAEEAFRSLRSSGIKVALT 109 (220)
T ss_pred --------------------------cCCCHHHHHHHHHHHHHHHHHHhcc---cCCccCCCHHHHHHHHHHCCCEEEEE
Confidence 1233334445556666666554432 24589999999999 789999999
Q ss_pred cCcH--HHHHHHHHHh
Q 029420 159 TTKA--VSQMLYYESL 172 (193)
Q Consensus 159 TnK~--~a~~lL~~~~ 172 (193)
||++ .++.+|+++.
T Consensus 110 T~~~~~~~~~~l~~~~ 125 (220)
T TIGR03351 110 TGFDRDTAERLLEKLG 125 (220)
T ss_pred eCCchHHHHHHHHHhh
Confidence 9999 8888888774
No 4
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=99.64 E-value=2.1e-15 Score=129.36 Aligned_cols=113 Identities=19% Similarity=0.191 Sum_probs=81.9
Q ss_pred CceEEEecCcccccChHHHHHHHHHHHHHhcCCCCCCCCcchhhhhhhhhhhccchhhccHHHHHHHHHHhhhccccccc
Q 029420 2 ADLYALDFDGVLCDSCGESSLSAVKAAKVRWPGLFDGVDSVIEDWIVDQMHILRPVVETGYENLLLVRLLLEIRMPSIRK 81 (193)
Q Consensus 2 ~~~vlFDlDGTLvDS~~di~~a~~~al~~l~~~~~~gl~~~~~~~~~~~~~~vr~~Ig~G~~~ll~~~~l~~~~~~~~~~ 81 (193)
.++|+|||||||+||.+.+..+.+.+++++ |++..+ .+.++.++|...+.++ +
T Consensus 62 ~k~vIFDlDGTLiDS~~~~~~a~~~~~~~~------G~~~~~-------~~~~~~~~g~~~~~i~--~------------ 114 (273)
T PRK13225 62 LQAIIFDFDGTLVDSLPTVVAIANAHAPDF------GYDPID-------ERDYAQLRQWSSRTIV--R------------ 114 (273)
T ss_pred cCEEEECCcCccccCHHHHHHHHHHHHHHC------CCCCCC-------HHHHHHHhCccHHHHH--H------------
Confidence 478999999999999999999999999999 565332 2445666665544333 1
Q ss_pred ccccccccHHHHhhhhcchhhhhhhhcCCCHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCHHHHHH---hCCCcEEEE
Q 029420 82 SSVSEGLTVEGILENWSKIKPVIMEDWSENRDALVDLFGKVRDEWMDKDLTTWIGANRFYPGIPDALK---FASSRIYIV 158 (193)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~e~~~~~~~~~r~~y~~~y~~~~~~~~~lypGV~e~L~---~~gi~laVv 158 (193)
.++.++++.++....|+++|.+. ....++||||.++|+ ++|++++|+
T Consensus 115 -------------------------~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~pg~~e~L~~L~~~gi~laIv 164 (273)
T PRK13225 115 -------------------------RAGLSPWQQARLLQRVQRQLGDC-----LPALQLFPGVADLLAQLRSRSLCLGIL 164 (273)
T ss_pred -------------------------HcCCCHHHHHHHHHHHHHHHHhh-----cccCCcCCCHHHHHHHHHHCCCeEEEE
Confidence 11223333344455566555332 345789999999999 899999999
Q ss_pred cCcH--HHHHHHHHH
Q 029420 159 TTKA--VSQMLYYES 171 (193)
Q Consensus 159 TnK~--~a~~lL~~~ 171 (193)
||+. .++.+|+++
T Consensus 165 Sn~~~~~~~~~L~~~ 179 (273)
T PRK13225 165 SSNSRQNIEAFLQRQ 179 (273)
T ss_pred eCCCHHHHHHHHHHc
Confidence 9999 888899887
No 5
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=99.63 E-value=2.8e-15 Score=122.55 Aligned_cols=113 Identities=15% Similarity=0.134 Sum_probs=79.3
Q ss_pred CCceEEEecCcccccChHHHHHHHHHHHHHhcCCCCCCCCcchhhhhhhhhhhccchhhccHHHHHHHHHHhhhcccccc
Q 029420 1 MADLYALDFDGVLCDSCGESSLSAVKAAKVRWPGLFDGVDSVIEDWIVDQMHILRPVVETGYENLLLVRLLLEIRMPSIR 80 (193)
Q Consensus 1 ~~~~vlFDlDGTLvDS~~di~~a~~~al~~l~~~~~~gl~~~~~~~~~~~~~~vr~~Ig~G~~~ll~~~~l~~~~~~~~~ 80 (193)
|.++|+|||||||+||.+.+..+.+.++++++ .+..+ .++++...|......+. .+
T Consensus 2 ~~~~viFD~DGTL~ds~~~~~~a~~~~~~~~~------~~~~~-------~~~~~~~~G~~~~~~~~--~~--------- 57 (214)
T PRK13288 2 KINTVLFDLDGTLINTNELIISSFLHTLKTYY------PNQYK-------REDVLPFIGPSLHDTFS--KI--------- 57 (214)
T ss_pred CccEEEEeCCCcCccCHHHHHHHHHHHHHHhC------CCCCC-------HHHHHHHhCcCHHHHHH--hc---------
Confidence 46899999999999999999999999999993 33222 24566666765443331 01
Q ss_pred cccccccccHHHHhhhhcchhhhhhhhcCCCHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCHHHHHH---hCCCcEEE
Q 029420 81 KSSVSEGLTVEGILENWSKIKPVIMEDWSENRDALVDLFGKVRDEWMDKDLTTWIGANRFYPGIPDALK---FASSRIYI 157 (193)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~e~~~~~~~~~r~~y~~~y~~~~~~~~~lypGV~e~L~---~~gi~laV 157 (193)
+++..++....|++.+.+. .....++|||+.++|+ ++|++++|
T Consensus 58 ------------------------------~~~~~~~~~~~~~~~~~~~----~~~~~~~~~g~~~~l~~L~~~g~~~~i 103 (214)
T PRK13288 58 ------------------------------DESKVEEMITTYREFNHEH----HDELVTEYETVYETLKTLKKQGYKLGI 103 (214)
T ss_pred ------------------------------CHHHHHHHHHHHHHHHHHh----hhhhcccCcCHHHHHHHHHHCCCeEEE
Confidence 1122223334455544332 2345689999999999 78999999
Q ss_pred EcCcH--HHHHHHHHH
Q 029420 158 VTTKA--VSQMLYYES 171 (193)
Q Consensus 158 vTnK~--~a~~lL~~~ 171 (193)
+||++ .+..+|+.+
T Consensus 104 ~S~~~~~~~~~~l~~~ 119 (214)
T PRK13288 104 VTTKMRDTVEMGLKLT 119 (214)
T ss_pred EeCCCHHHHHHHHHHc
Confidence 99998 788888877
No 6
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=99.63 E-value=3.8e-15 Score=127.27 Aligned_cols=122 Identities=20% Similarity=0.262 Sum_probs=88.1
Q ss_pred CCceEEEecCcccccChHHHHHHHHHHHHHhcCCCCCCCCcchhhhhhhhhhhccchhhccHHHHHHHHHHhhhcccccc
Q 029420 1 MADLYALDFDGVLCDSCGESSLSAVKAAKVRWPGLFDGVDSVIEDWIVDQMHILRPVVETGYENLLLVRLLLEIRMPSIR 80 (193)
Q Consensus 1 ~~~~vlFDlDGTLvDS~~di~~a~~~al~~l~~~~~~gl~~~~~~~~~~~~~~vr~~Ig~G~~~ll~~~~l~~~~~~~~~ 80 (193)
|.++|+|||||||+||.+.+..+.+.+++++ |.+.. +.++++.++|.|...++ ...+...
T Consensus 12 ~~k~viFDlDGTL~Ds~~~~~~a~~~~~~~~------g~~~~-------~~~~~~~~~g~~~~~~~-~~~l~~~------ 71 (272)
T PRK13223 12 LPRLVMFDLDGTLVDSVPDLAAAVDRMLLEL------GRPPA-------GLEAVRHWVGNGAPVLV-RRALAGS------ 71 (272)
T ss_pred cCCEEEEcCCCccccCHHHHHHHHHHHHHHc------CCCCC-------CHHHHHHHhChhHHHHH-HHHhccc------
Confidence 6789999999999999999999999999999 55532 23567889999876665 2332110
Q ss_pred cccccccccHHHHhhhhcchhhhhhhhcCCCHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCHHHHHH---hCCCcEEE
Q 029420 81 KSSVSEGLTVEGILENWSKIKPVIMEDWSENRDALVDLFGKVRDEWMDKDLTTWIGANRFYPGIPDALK---FASSRIYI 157 (193)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~e~~~~~~~~~r~~y~~~y~~~~~~~~~lypGV~e~L~---~~gi~laV 157 (193)
...++.+++..++....|++.|... .....+|||+.++|+ ++|++++|
T Consensus 72 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~g~~e~L~~Lk~~g~~l~i 122 (272)
T PRK13223 72 ------------------------IDHDGVDDELAEQALALFMEAYADS-----HELTVVYPGVRDTLKWLKKQGVEMAL 122 (272)
T ss_pred ------------------------ccccCCCHHHHHHHHHHHHHHHHhc-----CcCCccCCCHHHHHHHHHHCCCeEEE
Confidence 0012334444455556666655432 234689999999999 78999999
Q ss_pred EcCcH--HHHHHHHHH
Q 029420 158 VTTKA--VSQMLYYES 171 (193)
Q Consensus 158 vTnK~--~a~~lL~~~ 171 (193)
+||++ .++.+++++
T Consensus 123 vTn~~~~~~~~~l~~~ 138 (272)
T PRK13223 123 ITNKPERFVAPLLDQM 138 (272)
T ss_pred EECCcHHHHHHHHHHc
Confidence 99998 788888775
No 7
>PRK11587 putative phosphatase; Provisional
Probab=99.62 E-value=5.3e-15 Score=121.70 Aligned_cols=114 Identities=17% Similarity=0.134 Sum_probs=74.9
Q ss_pred CCceEEEecCcccccChHHHHHHHHHHHHHhcCCCCCCCCcchhhhhhhhhhhccchhhccHHHHHHHHHHhhhcccccc
Q 029420 1 MADLYALDFDGVLCDSCGESSLSAVKAAKVRWPGLFDGVDSVIEDWIVDQMHILRPVVETGYENLLLVRLLLEIRMPSIR 80 (193)
Q Consensus 1 ~~~~vlFDlDGTLvDS~~di~~a~~~al~~l~~~~~~gl~~~~~~~~~~~~~~vr~~Ig~G~~~ll~~~~l~~~~~~~~~ 80 (193)
|.++|+|||||||+||.+.+..+.+.+++++ |++.. +..+.++|.+....+ .+.+.
T Consensus 2 ~~k~viFDlDGTL~Ds~~~~~~a~~~~~~~~------g~~~~---------~~~~~~~g~~~~~~~-~~~~~-------- 57 (218)
T PRK11587 2 RCKGFLFDLDGTLVDSLPAVERAWSNWADRH------GIAPD---------EVLNFIHGKQAITSL-RHFMA-------- 57 (218)
T ss_pred CCCEEEEcCCCCcCcCHHHHHHHHHHHHHHc------CCCHH---------HHHHHHcCCCHHHHH-HHHhc--------
Confidence 4589999999999999999999999999999 56521 223344576655554 12211
Q ss_pred cccccccccHHHHhhhhcchhhhhhhhcCCCHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCHHHHHH---hCCCcEEE
Q 029420 81 KSSVSEGLTVEGILENWSKIKPVIMEDWSENRDALVDLFGKVRDEWMDKDLTTWIGANRFYPGIPDALK---FASSRIYI 157 (193)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~e~~~~~~~~~r~~y~~~y~~~~~~~~~lypGV~e~L~---~~gi~laV 157 (193)
+ .+.+.+.+.+..++ .|... .....++|||+.++|+ ++|++++|
T Consensus 58 ------~----------------------~~~~~~~~~~~~~~-~~~~~----~~~~~~~~pg~~e~L~~L~~~g~~~~i 104 (218)
T PRK11587 58 ------G----------------------ASEAEIQAEFTRLE-QIEAT----DTEGITALPGAIALLNHLNKLGIPWAI 104 (218)
T ss_pred ------c----------------------CCcHHHHHHHHHHH-HHHHh----hhcCceeCcCHHHHHHHHHHcCCcEEE
Confidence 0 11122222222211 12111 2345789999999999 89999999
Q ss_pred EcCcH--HHHHHHHHH
Q 029420 158 VTTKA--VSQMLYYES 171 (193)
Q Consensus 158 vTnK~--~a~~lL~~~ 171 (193)
+||++ .+...++..
T Consensus 105 vTn~~~~~~~~~l~~~ 120 (218)
T PRK11587 105 VTSGSVPVASARHKAA 120 (218)
T ss_pred EcCCCchHHHHHHHhc
Confidence 99998 666666655
No 8
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=99.60 E-value=1e-14 Score=124.26 Aligned_cols=117 Identities=15% Similarity=0.082 Sum_probs=80.4
Q ss_pred CceEEEecCcccccChHHHH-HHHHHHHHHhcCCCCCCCCcchhhhhhhhhhhccchhhccHHHHHHHHHHhhhcccccc
Q 029420 2 ADLYALDFDGVLCDSCGESS-LSAVKAAKVRWPGLFDGVDSVIEDWIVDQMHILRPVVETGYENLLLVRLLLEIRMPSIR 80 (193)
Q Consensus 2 ~~~vlFDlDGTLvDS~~di~-~a~~~al~~l~~~~~~gl~~~~~~~~~~~~~~vr~~Ig~G~~~ll~~~~l~~~~~~~~~ 80 (193)
.++|+|||||||+||.+.+. .+.+.+++++ |++..+ .+.++.++|.+....+ ...+..
T Consensus 24 ~k~vIFDlDGTLvDS~~~~~~~a~~~~~~~~------G~~~~~-------~e~~~~~~G~~~~~~~-~~l~~~------- 82 (260)
T PLN03243 24 WLGVVLEWEGVIVEDDSELERKAWRALAEEE------GKRPPP-------AFLLKRAEGMKNEQAI-SEVLCW------- 82 (260)
T ss_pred ceEEEEeCCCceeCCchHHHHHHHHHHHHHc------CCCCCH-------HHHHHHhcCCCHHHHH-HHHhcc-------
Confidence 37899999999999988776 4778999999 565321 2456788998877665 233211
Q ss_pred cccccccccHHHHhhhhcchhhhhhhhcCCCHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCHHHHHH---hCCCcEEE
Q 029420 81 KSSVSEGLTVEGILENWSKIKPVIMEDWSENRDALVDLFGKVRDEWMDKDLTTWIGANRFYPGIPDALK---FASSRIYI 157 (193)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~e~~~~~~~~~r~~y~~~y~~~~~~~~~lypGV~e~L~---~~gi~laV 157 (193)
..+.+.+.+....++..|... . ....++|||+.++|+ ++|++++|
T Consensus 83 ----------------------------~~~~~~~~~l~~~~~~~~~~~-~---~~~~~l~pg~~e~L~~L~~~g~~l~I 130 (260)
T PLN03243 83 ----------------------------SRDFLQMKRLAIRKEDLYEYM-Q---GGLYRLRPGSREFVQALKKHEIPIAV 130 (260)
T ss_pred ----------------------------CCCHHHHHHHHHHHHHHHHHH-H---ccCcccCCCHHHHHHHHHHCCCEEEE
Confidence 011122223333344444221 1 124689999999999 79999999
Q ss_pred EcCcH--HHHHHHHHH
Q 029420 158 VTTKA--VSQMLYYES 171 (193)
Q Consensus 158 vTnK~--~a~~lL~~~ 171 (193)
+||++ .++.+++++
T Consensus 131 ~Tn~~~~~~~~~l~~~ 146 (260)
T PLN03243 131 ASTRPRRYLERAIEAV 146 (260)
T ss_pred EeCcCHHHHHHHHHHc
Confidence 99998 888899887
No 9
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=99.60 E-value=6e-15 Score=119.77 Aligned_cols=117 Identities=19% Similarity=0.235 Sum_probs=82.2
Q ss_pred EEEecCcccccChHHHHHHHHHHHHHhcCCCCCCCCcchhhhhhhhhhhccchhhccHHHHHHHHHHhhhcccccccccc
Q 029420 5 YALDFDGVLCDSCGESSLSAVKAAKVRWPGLFDGVDSVIEDWIVDQMHILRPVVETGYENLLLVRLLLEIRMPSIRKSSV 84 (193)
Q Consensus 5 vlFDlDGTLvDS~~di~~a~~~al~~l~~~~~~gl~~~~~~~~~~~~~~vr~~Ig~G~~~ll~~~~l~~~~~~~~~~~~~ 84 (193)
|+|||||||+||.+.+..+.+.+++++ |.+..+ .+.++.++|.+....+ .+.+...
T Consensus 1 viFD~DGTL~Ds~~~~~~~~~~~~~~~------~~~~~~-------~~~~~~~~g~~~~~~~-~~~~~~~---------- 56 (213)
T TIGR01449 1 VLFDLDGTLVDSAPDIAAAVNMALAAL------GLPPAT-------LARVIGFIGNGVPVLM-ERVLAWA---------- 56 (213)
T ss_pred CeecCCCccccCHHHHHHHHHHHHHHC------CCCCCC-------HHHHHHHhcccHHHHH-HHHhhcc----------
Confidence 689999999999999999999999999 555432 3556777888766554 2222110
Q ss_pred cccccHHHHhhhhcchhhhhhhhcCCCHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCHHHHHH---hCCCcEEEEcCc
Q 029420 85 SEGLTVEGILENWSKIKPVIMEDWSENRDALVDLFGKVRDEWMDKDLTTWIGANRFYPGIPDALK---FASSRIYIVTTK 161 (193)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~~~~~~~g~~~e~~~~~~~~~r~~y~~~y~~~~~~~~~lypGV~e~L~---~~gi~laVvTnK 161 (193)
+. +.+.+..++....+.++|.+. .....++|||+.++|+ ++|++++|+||+
T Consensus 57 --~~--------------------~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~g~~~~L~~l~~~g~~~~i~S~~ 110 (213)
T TIGR01449 57 --GQ--------------------EPDAQRVAELRKLFDRHYEEV----AGELTSVFPGVEATLGALRAKGLRLGLVTNK 110 (213)
T ss_pred --cc--------------------ccChHHHHHHHHHHHHHHHHh----ccccCccCCCHHHHHHHHHHCCCeEEEEeCC
Confidence 00 112233334445555555443 3345689999999999 889999999999
Q ss_pred H--HHHHHHHHH
Q 029420 162 A--VSQMLYYES 171 (193)
Q Consensus 162 ~--~a~~lL~~~ 171 (193)
+ .++.+++++
T Consensus 111 ~~~~~~~~l~~~ 122 (213)
T TIGR01449 111 PTPLARPLLELL 122 (213)
T ss_pred CHHHHHHHHHHc
Confidence 8 888888886
No 10
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=99.59 E-value=1.1e-14 Score=122.56 Aligned_cols=120 Identities=13% Similarity=0.082 Sum_probs=79.6
Q ss_pred CCceEEEecCcccccChHHHHHHHHHHHHHhcCCCCCCCCcchhhhhhhhhhhccchhhccHHHHHHHHHHhhhcccccc
Q 029420 1 MADLYALDFDGVLCDSCGESSLSAVKAAKVRWPGLFDGVDSVIEDWIVDQMHILRPVVETGYENLLLVRLLLEIRMPSIR 80 (193)
Q Consensus 1 ~~~~vlFDlDGTLvDS~~di~~a~~~al~~l~~~~~~gl~~~~~~~~~~~~~~vr~~Ig~G~~~ll~~~~l~~~~~~~~~ 80 (193)
|.++|+|||||||+||.+.+..+.+.+++++|.. .|.+.. .....+.++|.+.+.++ .+.+..
T Consensus 21 ~~k~viFDlDGTLiDs~~~~~~a~~~~~~~~g~~--~g~~~~-------~~~~~~~~~G~~~~~~~-~~~~~~------- 83 (248)
T PLN02770 21 PLEAVLFDVDGTLCDSDPLHYYAFREMLQEINFN--GGVPIT-------EEFFVENIAGKHNEDIA-LGLFPD------- 83 (248)
T ss_pred ccCEEEEcCCCccCcCHHHHHHHHHHHHHHhccc--cCCCCC-------HHHHHHHcCCCCHHHHH-HHHcCc-------
Confidence 3578999999999999999999999999999311 012211 11234667787766655 222210
Q ss_pred cccccccccHHHHhhhhcchhhhhhhhcCCCHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCHHHHHH---hCCCcEEE
Q 029420 81 KSSVSEGLTVEGILENWSKIKPVIMEDWSENRDALVDLFGKVRDEWMDKDLTTWIGANRFYPGIPDALK---FASSRIYI 157 (193)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~e~~~~~~~~~r~~y~~~y~~~~~~~~~lypGV~e~L~---~~gi~laV 157 (193)
.. +...+....++.+|.+.+ .....+||||.++|+ ++|++++|
T Consensus 84 --------~~----------------------~~~~~~~~~~~~~y~~~~----~~~~~l~pgv~e~L~~L~~~g~~l~I 129 (248)
T PLN02770 84 --------DL----------------------ERGLKFTDDKEALFRKLA----SEQLKPLNGLYKLKKWIEDRGLKRAA 129 (248)
T ss_pred --------ch----------------------hhHHHHHHHHHHHHHHHH----HhcCCcCccHHHHHHHHHHcCCeEEE
Confidence 00 001112233444444332 234689999999999 89999999
Q ss_pred EcCcH--HHHHHHHHH
Q 029420 158 VTTKA--VSQMLYYES 171 (193)
Q Consensus 158 vTnK~--~a~~lL~~~ 171 (193)
+||++ .++.+|+++
T Consensus 130 ~Tn~~~~~~~~~l~~~ 145 (248)
T PLN02770 130 VTNAPRENAELMISLL 145 (248)
T ss_pred EeCCCHHHHHHHHHHc
Confidence 99998 888888887
No 11
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=99.59 E-value=1.8e-14 Score=122.22 Aligned_cols=127 Identities=13% Similarity=0.085 Sum_probs=83.3
Q ss_pred CceEEEecCcccccChHH-HHHHHHHHHHHhcCCCCCCCCcchhhhhhhhhhhccchhhccHHHHHHHHHHhhhcccccc
Q 029420 2 ADLYALDFDGVLCDSCGE-SSLSAVKAAKVRWPGLFDGVDSVIEDWIVDQMHILRPVVETGYENLLLVRLLLEIRMPSIR 80 (193)
Q Consensus 2 ~~~vlFDlDGTLvDS~~d-i~~a~~~al~~l~~~~~~gl~~~~~~~~~~~~~~vr~~Ig~G~~~ll~~~~l~~~~~~~~~ 80 (193)
.++|+|||||||+||... ...+.+.+++++ |++.. .++++..+|.+....+. ..+..
T Consensus 4 ~k~vIFDlDGTLiDs~~~~~~~a~~~~~~~~------g~~~~--------~~~~~~~~G~~~~~~~~-~~~~~------- 61 (267)
T PRK13478 4 IQAVIFDWAGTTVDFGSFAPTQAFVEAFAQF------GVEIT--------LEEARGPMGLGKWDHIR-ALLKM------- 61 (267)
T ss_pred eEEEEEcCCCCeecCCCccHHHHHHHHHHHc------CCCCC--------HHHHHHhcCCCHHHHHH-HHHhc-------
Confidence 489999999999999654 367889999998 55422 24567778877555441 21100
Q ss_pred cccccccccHHHHhhhhcchhhhhhhhcCC--CHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCHHHHHH---hCCCcE
Q 029420 81 KSSVSEGLTVEGILENWSKIKPVIMEDWSE--NRDALVDLFGKVRDEWMDKDLTTWIGANRFYPGIPDALK---FASSRI 155 (193)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~--~~e~~~~~~~~~r~~y~~~y~~~~~~~~~lypGV~e~L~---~~gi~l 155 (193)
.... ..+...+|. +.+++.+....|+++|.+.+ .....+|||+.++|+ ++|+++
T Consensus 62 ----------~~~~-------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~pg~~elL~~L~~~g~~l 120 (267)
T PRK13478 62 ----------PRVA-------ARWQAVFGRLPTEADVDALYAAFEPLQIAKL----ADYATPIPGVLEVIAALRARGIKI 120 (267)
T ss_pred ----------HHHH-------HHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH----hhcCCCCCCHHHHHHHHHHCCCEE
Confidence 0000 111122232 34445555666666655443 335689999999999 889999
Q ss_pred EEEcCcH--HHHHHHHHH
Q 029420 156 YIVTTKA--VSQMLYYES 171 (193)
Q Consensus 156 aVvTnK~--~a~~lL~~~ 171 (193)
+|+||++ .+..+|+.+
T Consensus 121 ~I~T~~~~~~~~~~l~~~ 138 (267)
T PRK13478 121 GSTTGYTREMMDVVVPLA 138 (267)
T ss_pred EEEcCCcHHHHHHHHHHH
Confidence 9999999 777888765
No 12
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=99.57 E-value=3.4e-14 Score=119.25 Aligned_cols=127 Identities=14% Similarity=0.123 Sum_probs=85.0
Q ss_pred CceEEEecCcccccChH-HHHHHHHHHHHHhcCCCCCCCCcchhhhhhhhhhhccchhhccHHHHHHHHHHhhhcccccc
Q 029420 2 ADLYALDFDGVLCDSCG-ESSLSAVKAAKVRWPGLFDGVDSVIEDWIVDQMHILRPVVETGYENLLLVRLLLEIRMPSIR 80 (193)
Q Consensus 2 ~~~vlFDlDGTLvDS~~-di~~a~~~al~~l~~~~~~gl~~~~~~~~~~~~~~vr~~Ig~G~~~ll~~~~l~~~~~~~~~ 80 (193)
.++|+|||||||+||.. ....+.+.+++++ |.+. + .++++..+|.+....+. ..+..
T Consensus 2 ~k~viFD~DGTLiDs~~~~~~~a~~~~~~~~------g~~~-~-------~~~~~~~~G~~~~~~~~-~~~~~------- 59 (253)
T TIGR01422 2 IEAVIFDWAGTTVDFGSFAPTQAFVEAFAEF------GVQI-T-------LEEARGPMGLGKWDHIR-ALLKM------- 59 (253)
T ss_pred ceEEEEeCCCCeecCCCccHHHHHHHHHHHc------CCCc-c-------HHHHHHhcCccHHHHHH-HHhcC-------
Confidence 37899999999999964 3477889999998 5542 1 34567778877665552 22100
Q ss_pred cccccccccHHHHhhhhcchhhhhhhhcC--CCHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCHHHHHH---hCCCcE
Q 029420 81 KSSVSEGLTVEGILENWSKIKPVIMEDWS--ENRDALVDLFGKVRDEWMDKDLTTWIGANRFYPGIPDALK---FASSRI 155 (193)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~g--~~~e~~~~~~~~~r~~y~~~y~~~~~~~~~lypGV~e~L~---~~gi~l 155 (193)
..... .+.+.+| .+.+.+.+....|+++|.+.+ ....++||||.++|+ ++|+++
T Consensus 60 ----------~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~pg~~e~L~~L~~~g~~l 118 (253)
T TIGR01422 60 ----------PAVAE-------RWRAKFGRLPTEADIEAIYEAFEPLQLAKL----AEYSSPIPGVIEVIAYLRARGIKI 118 (253)
T ss_pred ----------HHHHH-------HHHHHhCCCCCHHHHHHHHHHHHHHHHHHH----HhcCccCCCHHHHHHHHHHCCCeE
Confidence 00111 1112223 244555556666666654432 335789999999999 889999
Q ss_pred EEEcCcH--HHHHHHHHH
Q 029420 156 YIVTTKA--VSQMLYYES 171 (193)
Q Consensus 156 aVvTnK~--~a~~lL~~~ 171 (193)
+|+||++ .++.+|+++
T Consensus 119 ~IvT~~~~~~~~~~l~~~ 136 (253)
T TIGR01422 119 GSTTGYTREMMDVVAPEA 136 (253)
T ss_pred EEECCCcHHHHHHHHHHH
Confidence 9999999 888888877
No 13
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=99.55 E-value=4.5e-14 Score=126.23 Aligned_cols=117 Identities=15% Similarity=0.095 Sum_probs=81.9
Q ss_pred ceEEEecCcccccChHHHHH-HHHHHHHHhcCCCCCCCCcchhhhhhhhhhhccchhhccHHHHHHHHHHhhhccccccc
Q 029420 3 DLYALDFDGVLCDSCGESSL-SAVKAAKVRWPGLFDGVDSVIEDWIVDQMHILRPVVETGYENLLLVRLLLEIRMPSIRK 81 (193)
Q Consensus 3 ~~vlFDlDGTLvDS~~di~~-a~~~al~~l~~~~~~gl~~~~~~~~~~~~~~vr~~Ig~G~~~ll~~~~l~~~~~~~~~~ 81 (193)
++|+|||||||+||.+.+.. +.+.+++++ |++..+ .+.++.++|.+.+..+ .+.+..
T Consensus 132 ~~VIFDlDGTLIDS~~~i~~~a~~~l~~e~------G~~~~~-------~e~~~~~~G~~~~~~l-~~ll~~-------- 189 (381)
T PLN02575 132 LGAIFEWEGVIIEDNPDLENQAWLTLAQEE------GKSPPP-------AFILRRVEGMKNEQAI-SEVLCW-------- 189 (381)
T ss_pred CEEEEcCcCcceeCHHHHHHHHHHHHHHHc------CCCCCH-------HHHHHHhcCCCHHHHH-HHHhhc--------
Confidence 68999999999999998886 555566788 565432 3457888998877665 232210
Q ss_pred ccccccccHHHHhhhhcchhhhhhhhcCCCHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCHHHHHH---hCCCcEEEE
Q 029420 82 SSVSEGLTVEGILENWSKIKPVIMEDWSENRDALVDLFGKVRDEWMDKDLTTWIGANRFYPGIPDALK---FASSRIYIV 158 (193)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~e~~~~~~~~~r~~y~~~y~~~~~~~~~lypGV~e~L~---~~gi~laVv 158 (193)
..++++.++....+++.|.+. ......+|||+.++|+ ++|++++|+
T Consensus 190 ---------------------------~~~~~~~e~l~~~~~~~y~~~----~~~~~~l~pGa~ElL~~Lk~~GiklaIa 238 (381)
T PLN02575 190 ---------------------------SRDPAELRRMATRKEEIYQAL----QGGIYRLRTGSQEFVNVLMNYKIPMALV 238 (381)
T ss_pred ---------------------------cCCHHHHHHHHHHHHHHHHHH----hccCCCcCcCHHHHHHHHHHCCCeEEEE
Confidence 011222334444555555443 2334689999999999 899999999
Q ss_pred cCcH--HHHHHHHHHh
Q 029420 159 TTKA--VSQMLYYESL 172 (193)
Q Consensus 159 TnK~--~a~~lL~~~~ 172 (193)
||++ .++.+|++++
T Consensus 239 Sn~~~~~~~~~L~~lg 254 (381)
T PLN02575 239 STRPRKTLENAIGSIG 254 (381)
T ss_pred eCCCHHHHHHHHHHcC
Confidence 9999 8888998873
No 14
>PRK11590 hypothetical protein; Provisional
Probab=99.55 E-value=2.5e-14 Score=117.63 Aligned_cols=121 Identities=14% Similarity=0.171 Sum_probs=84.9
Q ss_pred ceEEEecCcccccChHHHHHHHHHHH-HHhcCCCCCCCCcchhhhhhhhhhhccchhhccHHHHHHHHHHhhhccccccc
Q 029420 3 DLYALDFDGVLCDSCGESSLSAVKAA-KVRWPGLFDGVDSVIEDWIVDQMHILRPVVETGYENLLLVRLLLEIRMPSIRK 81 (193)
Q Consensus 3 ~~vlFDlDGTLvDS~~di~~a~~~al-~~l~~~~~~gl~~~~~~~~~~~~~~vr~~Ig~G~~~ll~~~~l~~~~~~~~~~ 81 (193)
|+++|||||||+ .+++..+.+..+ +++ |++.. ....+++++|.|....+....+.
T Consensus 7 k~~iFD~DGTL~--~~d~~~~~~~~~~~~~------g~~~~-------~~~~~~~~ig~~l~~~~~~~~~~--------- 62 (211)
T PRK11590 7 RVVFFDLDGTLH--QQDMFGSFLRYLLRRQ------PLNLL-------LVLPLLPVIGLGLLVKGRAARWP--------- 62 (211)
T ss_pred eEEEEecCCCCc--ccchHHHHHHHHHHhc------chhhH-------HHhHHHHHhccCcccchhhhhhh---------
Confidence 689999999999 677899999888 777 55533 24678899998865543110110
Q ss_pred ccccccccHHHHhhhhcchhhhhhhhcCCCHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCHHHHH-H---hCCCcEEE
Q 029420 82 SSVSEGLTVEGILENWSKIKPVIMEDWSENRDALVDLFGKVRDEWMDKDLTTWIGANRFYPGIPDAL-K---FASSRIYI 157 (193)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~e~~~~~~~~~r~~y~~~y~~~~~~~~~lypGV~e~L-~---~~gi~laV 157 (193)
...+. . ....|++.+++++..+.|+++|.+. ..+||||.++| + ++|++++|
T Consensus 63 --------~~~~~-------~--~~~~g~~~~~~~~~~~~f~~~~~~~--------~~~~pga~e~L~~~l~~~G~~l~I 117 (211)
T PRK11590 63 --------MSLLL-------W--GCTFGHSEARLQALEADFVRWFRDN--------VTAFPVVQERLTTYLLSSDADVWL 117 (211)
T ss_pred --------HHHHH-------H--HHHcCCCHHHHHHHHHHHHHHHHHh--------CcCCccHHHHHHHHHHhCCCEEEE
Confidence 00000 0 0012567777777788888776532 57799999999 4 57999999
Q ss_pred EcCcH--HHHHHHHHHh
Q 029420 158 VTTKA--VSQMLYYESL 172 (193)
Q Consensus 158 vTnK~--~a~~lL~~~~ 172 (193)
||||+ .++++++++.
T Consensus 118 vSas~~~~~~~il~~l~ 134 (211)
T PRK11590 118 ITGSPQPLVEQVYFDTP 134 (211)
T ss_pred EeCCcHHHHHHHHHHcc
Confidence 99999 8888988865
No 15
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=99.55 E-value=9.3e-14 Score=113.59 Aligned_cols=120 Identities=24% Similarity=0.305 Sum_probs=86.9
Q ss_pred CceEEEecCcccccChHHHHHHHHHHHHHhcCCCCCCCCcchhhhhhhhhhhccchhhccHHHHHHHHHHhhhccccccc
Q 029420 2 ADLYALDFDGVLCDSCGESSLSAVKAAKVRWPGLFDGVDSVIEDWIVDQMHILRPVVETGYENLLLVRLLLEIRMPSIRK 81 (193)
Q Consensus 2 ~~~vlFDlDGTLvDS~~di~~a~~~al~~l~~~~~~gl~~~~~~~~~~~~~~vr~~Ig~G~~~ll~~~~l~~~~~~~~~~ 81 (193)
.++|+|||||||+||.+....+.+.+++++ |.+..+ .+.++.++|.|...++ .+.+...
T Consensus 6 ~~~iiFD~DGTL~d~~~~~~~~~~~~~~~~------~~~~~~-------~~~~~~~~g~~~~~~~-~~~~~~~------- 64 (226)
T PRK13222 6 IRAVAFDLDGTLVDSAPDLAAAVNAALAAL------GLPPAG-------EERVRTWVGNGADVLV-ERALTWA------- 64 (226)
T ss_pred CcEEEEcCCcccccCHHHHHHHHHHHHHHC------CCCCCC-------HHHHHHHhCccHHHHH-HHHHhhc-------
Confidence 489999999999999999999999999999 555432 3567788998877766 3443210
Q ss_pred ccccccccHHHHhhhhcchhhhhhhhcCCCHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCHHHHHH---hCCCcEEEE
Q 029420 82 SSVSEGLTVEGILENWSKIKPVIMEDWSENRDALVDLFGKVRDEWMDKDLTTWIGANRFYPGIPDALK---FASSRIYIV 158 (193)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~e~~~~~~~~~r~~y~~~y~~~~~~~~~lypGV~e~L~---~~gi~laVv 158 (193)
+ ...+.++.++....+.++|.+. .....++|||+.++|+ ++|++++|+
T Consensus 65 -----~--------------------~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~g~~~~l~~l~~~g~~~~i~ 115 (226)
T PRK13222 65 -----G--------------------REPDEELLEKLRELFDRHYAEN----VAGGSRLYPGVKETLAALKAAGYPLAVV 115 (226)
T ss_pred -----c--------------------CCccHHHHHHHHHHHHHHHHHh----ccccCccCCCHHHHHHHHHHCCCeEEEE
Confidence 0 0123334444555555555442 3335789999999999 789999999
Q ss_pred cCcH--HHHHHHHHH
Q 029420 159 TTKA--VSQMLYYES 171 (193)
Q Consensus 159 TnK~--~a~~lL~~~ 171 (193)
||++ .++.+++++
T Consensus 116 S~~~~~~~~~~l~~~ 130 (226)
T PRK13222 116 TNKPTPFVAPLLEAL 130 (226)
T ss_pred eCCCHHHHHHHHHHc
Confidence 9998 777888876
No 16
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=99.52 E-value=2.1e-13 Score=108.28 Aligned_cols=119 Identities=17% Similarity=0.169 Sum_probs=79.3
Q ss_pred eEEEecCcccccChHHHHHHHHHHHHHhcCCCCCCCCcchhhhhhhhhhhccchhhccHHHHHHHHHHhhhccccccccc
Q 029420 4 LYALDFDGVLCDSCGESSLSAVKAAKVRWPGLFDGVDSVIEDWIVDQMHILRPVVETGYENLLLVRLLLEIRMPSIRKSS 83 (193)
Q Consensus 4 ~vlFDlDGTLvDS~~di~~a~~~al~~l~~~~~~gl~~~~~~~~~~~~~~vr~~Ig~G~~~ll~~~~l~~~~~~~~~~~~ 83 (193)
+|+|||||||+||.+....+.+.+++.+ |++.. .+..+.+.|.+....+ .+.+...
T Consensus 1 ~iiFD~DGTL~ds~~~~~~~~~~~~~~~------g~~~~--------~~~~~~~~g~~~~~~~-~~~~~~~--------- 56 (185)
T TIGR01990 1 AVIFDLDGVITDTAEYHYLAWKALADEL------GIPFD--------EEFNESLKGVSREDSL-ERILDLG--------- 56 (185)
T ss_pred CeEEcCCCccccChHHHHHHHHHHHHHc------CCCCC--------HHHHHHhcCCChHHHH-HHHHHhc---------
Confidence 5899999999999999999999999999 56522 2345666676655544 2222110
Q ss_pred ccccccHHHHhhhhcchhhhhhhhcCCCHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCHHHHHH---hCCCcEEEEcC
Q 029420 84 VSEGLTVEGILENWSKIKPVIMEDWSENRDALVDLFGKVRDEWMDKDLTTWIGANRFYPGIPDALK---FASSRIYIVTT 160 (193)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~~~~~~~g~~~e~~~~~~~~~r~~y~~~y~~~~~~~~~lypGV~e~L~---~~gi~laVvTn 160 (193)
+. .+++++..+....+.++|.+.+.. ....++||||.++|+ ++|++++|+||
T Consensus 57 ---~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~pg~~~~L~~L~~~g~~~~i~s~ 111 (185)
T TIGR01990 57 ---GK--------------------KYSEEEKEELAERKNDYYVELLKE--LTPADVLPGIKNLLDDLKKNNIKIALASA 111 (185)
T ss_pred ---CC--------------------CCCHHHHHHHHHHHHHHHHHHHHh--cCCcccCccHHHHHHHHHHCCCeEEEEeC
Confidence 10 123344444555555555544322 223589999999999 89999999999
Q ss_pred cHHHHHHHHHH
Q 029420 161 KAVSQMLYYES 171 (193)
Q Consensus 161 K~~a~~lL~~~ 171 (193)
+..+..+|+++
T Consensus 112 ~~~~~~~l~~~ 122 (185)
T TIGR01990 112 SKNAPTVLEKL 122 (185)
T ss_pred CccHHHHHHhc
Confidence 77445566666
No 17
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=99.51 E-value=3.2e-13 Score=107.16 Aligned_cols=120 Identities=13% Similarity=0.123 Sum_probs=78.9
Q ss_pred CceEEEecCcccccChHHHHHHHHHHHHHhcCCCCCCCCcchhhhhhhhhhhccchhhccHHHHHHHHHHhhhccccccc
Q 029420 2 ADLYALDFDGVLCDSCGESSLSAVKAAKVRWPGLFDGVDSVIEDWIVDQMHILRPVVETGYENLLLVRLLLEIRMPSIRK 81 (193)
Q Consensus 2 ~~~vlFDlDGTLvDS~~di~~a~~~al~~l~~~~~~gl~~~~~~~~~~~~~~vr~~Ig~G~~~ll~~~~l~~~~~~~~~~ 81 (193)
.++|+|||||||+||.+....+.+.+++++ |++ .+ .+....+.|.+....+ ...+..
T Consensus 1 ~~~iiFD~DGTL~ds~~~~~~~~~~~~~~~------g~~-~~-------~~~~~~~~g~~~~~~~-~~~~~~-------- 57 (185)
T TIGR02009 1 YKAVIFDMDGVIVDTAPLHAQAWKHLADKY------GIE-FD-------KQYNTSLGGLSREDIL-RAILKL-------- 57 (185)
T ss_pred CCeEEEcCCCcccCChHHHHHHHHHHHHHc------CCC-CC-------HHHHHHcCCCCHHHHH-HHHHHh--------
Confidence 378999999999999999999999999999 454 21 1334455565444433 122110
Q ss_pred ccccccccHHHHhhhhcchhhhhhhhcCCCHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCHHHHHH---hCCCcEEEE
Q 029420 82 SSVSEGLTVEGILENWSKIKPVIMEDWSENRDALVDLFGKVRDEWMDKDLTTWIGANRFYPGIPDALK---FASSRIYIV 158 (193)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~e~~~~~~~~~r~~y~~~y~~~~~~~~~lypGV~e~L~---~~gi~laVv 158 (193)
+. .+++++++.+....+.+.|.+.+. ....++|||+.++|+ ++|++++|+
T Consensus 58 ---------------~~---------~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~g~~~~l~~l~~~g~~i~i~ 110 (185)
T TIGR02009 58 ---------------RK---------PGLSLETIHQLAERKNELYRELLR---LTGAEVLPGIENFLKRLKKKGIAVGLG 110 (185)
T ss_pred ---------------cC---------CCCCHHHHHHHHHHHHHHHHHHHh---ccCCCCCcCHHHHHHHHHHcCCeEEEE
Confidence 00 023444455555555555543321 224689999999998 789999999
Q ss_pred cCcHHHHHHHHHH
Q 029420 159 TTKAVSQMLYYES 171 (193)
Q Consensus 159 TnK~~a~~lL~~~ 171 (193)
||+..++.+|+++
T Consensus 111 S~~~~~~~~l~~~ 123 (185)
T TIGR02009 111 SSSKNADRILAKL 123 (185)
T ss_pred eCchhHHHHHHHc
Confidence 9988666777766
No 18
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=99.51 E-value=1.2e-13 Score=112.12 Aligned_cols=107 Identities=21% Similarity=0.286 Sum_probs=74.2
Q ss_pred EEEecCcccccChHHHHHHHHHHHHHhcCCCCCCCCcchhhhhhhhhhhccchhhccHHHHHHHHHHhhhcccccccccc
Q 029420 5 YALDFDGVLCDSCGESSLSAVKAAKVRWPGLFDGVDSVIEDWIVDQMHILRPVVETGYENLLLVRLLLEIRMPSIRKSSV 84 (193)
Q Consensus 5 vlFDlDGTLvDS~~di~~a~~~al~~l~~~~~~gl~~~~~~~~~~~~~~vr~~Ig~G~~~ll~~~~l~~~~~~~~~~~~~ 84 (193)
|+|||||||+||.+.+..+.+.+++++. |.+..+ .+.++.++|.+++.++. + +
T Consensus 1 iiFDlDGTL~Ds~~~~~~~~~~~~~~~~-----~~~~~~-------~~~~~~~~g~~~~~~~~-~-~------------- 53 (205)
T TIGR01454 1 VVFDLDGVLVDSFAVMREAFAIAYREVV-----GDGPAP-------FEEYRRHLGRYFPDIMR-I-M------------- 53 (205)
T ss_pred CeecCcCccccCHHHHHHHHHHHHHHhc-----CCCCCC-------HHHHHHHhCccHHHHHH-H-c-------------
Confidence 6899999999999999999999999852 444322 35678888887666651 1 1
Q ss_pred cccccHHHHhhhhcchhhhhhhhcCCCHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCHHHHHH---hCCCcEEEEcCc
Q 029420 85 SEGLTVEGILENWSKIKPVIMEDWSENRDALVDLFGKVRDEWMDKDLTTWIGANRFYPGIPDALK---FASSRIYIVTTK 161 (193)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~~~~~~~g~~~e~~~~~~~~~r~~y~~~y~~~~~~~~~lypGV~e~L~---~~gi~laVvTnK 161 (193)
+ .+.+. .+.+ ++..|. .....++|||+.++|+ ++|++++|+||+
T Consensus 54 --~----------------------~~~~~-~~~~--~~~~~~------~~~~~~~~~g~~~~L~~L~~~g~~~~i~Sn~ 100 (205)
T TIGR01454 54 --G----------------------LPLEM-EEPF--VRESYR------LAGEVEVFPGVPELLAELRADGVGTAIATGK 100 (205)
T ss_pred --C----------------------CCHHH-HHHH--HHHHHH------hhcccccCCCHHHHHHHHHHCCCeEEEEeCC
Confidence 1 11000 0000 111211 1235789999999999 889999999999
Q ss_pred H--HHHHHHHHH
Q 029420 162 A--VSQMLYYES 171 (193)
Q Consensus 162 ~--~a~~lL~~~ 171 (193)
+ .++.+++++
T Consensus 101 ~~~~~~~~l~~~ 112 (205)
T TIGR01454 101 SGPRARSLLEAL 112 (205)
T ss_pred chHHHHHHHHHc
Confidence 8 788888876
No 19
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=99.50 E-value=2.8e-13 Score=111.51 Aligned_cols=119 Identities=14% Similarity=0.112 Sum_probs=78.5
Q ss_pred CCceEEEecCcccccChHHHHHHHHHHHHHhcCCCCCCCCcchhhhhhhhhhhccchhhccHHHHHHHHHHhhhcccccc
Q 029420 1 MADLYALDFDGVLCDSCGESSLSAVKAAKVRWPGLFDGVDSVIEDWIVDQMHILRPVVETGYENLLLVRLLLEIRMPSIR 80 (193)
Q Consensus 1 ~~~~vlFDlDGTLvDS~~di~~a~~~al~~l~~~~~~gl~~~~~~~~~~~~~~vr~~Ig~G~~~ll~~~~l~~~~~~~~~ 80 (193)
|.++|+|||||||+||-+.+..+.+.+++.+ |.+... .+.++..+|...+..+ +.+.+.
T Consensus 6 ~~k~iiFD~DGTL~d~~~~~~~a~~~~~~~~------g~~~~~-------~~~~~~~~g~~~~~~~--~~~~~~------ 64 (222)
T PRK10826 6 QILAAIFDMDGLLIDSEPLWDRAELDVMASL------GVDISR-------REELPDTLGLRIDQVV--DLWYAR------ 64 (222)
T ss_pred cCcEEEEcCCCCCCcCHHHHHHHHHHHHHHC------CCCCCH-------HHHHHHhhCCCHHHHH--HHHHHh------
Confidence 4689999999999999999999999999999 554321 2445666676555443 221110
Q ss_pred cccccccccHHHHhhhhcchhhhhhhhcCCCHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCHHHHHH---hCCCcEEE
Q 029420 81 KSSVSEGLTVEGILENWSKIKPVIMEDWSENRDALVDLFGKVRDEWMDKDLTTWIGANRFYPGIPDALK---FASSRIYI 157 (193)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~e~~~~~~~~~r~~y~~~y~~~~~~~~~lypGV~e~L~---~~gi~laV 157 (193)
.++......+....+++.+.+.+ ....++|||+.++|+ ++|++++|
T Consensus 65 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~g~~~~l~~l~~~g~~~~i 113 (222)
T PRK10826 65 ---------------------------QPWNGPSRQEVVQRIIARVISLI----EETRPLLPGVREALALCKAQGLKIGL 113 (222)
T ss_pred ---------------------------cCCCCCCHHHHHHHHHHHHHHHH----hcCCCCCCCHHHHHHHHHHCCCeEEE
Confidence 00000011122333444443322 234689999999999 79999999
Q ss_pred EcCcH--HHHHHHHHH
Q 029420 158 VTTKA--VSQMLYYES 171 (193)
Q Consensus 158 vTnK~--~a~~lL~~~ 171 (193)
+||+. .++.+++.+
T Consensus 114 ~S~~~~~~~~~~l~~~ 129 (222)
T PRK10826 114 ASASPLHMLEAVLTMF 129 (222)
T ss_pred EeCCcHHHHHHHHHhC
Confidence 99998 778888776
No 20
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=99.49 E-value=2.1e-13 Score=117.44 Aligned_cols=134 Identities=18% Similarity=0.187 Sum_probs=77.1
Q ss_pred ceEEEecCcccccCh-HHHHHHHHHHHHHhcCCCCCCCCcchhhhhhhhhhhccchhhccHHHHHHHHHHhhhccccccc
Q 029420 3 DLYALDFDGVLCDSC-GESSLSAVKAAKVRWPGLFDGVDSVIEDWIVDQMHILRPVVETGYENLLLVRLLLEIRMPSIRK 81 (193)
Q Consensus 3 ~~vlFDlDGTLvDS~-~di~~a~~~al~~l~~~~~~gl~~~~~~~~~~~~~~vr~~Ig~G~~~ll~~~~l~~~~~~~~~~ 81 (193)
++|+|||||||+||. +-+..+.+.+++++ |++..... ......++. +|.|...+. +.+...
T Consensus 41 k~VIFDlDGTLvDS~~~~~~~a~~~~l~~~------G~~~~~~~--~~~~~~~~~-~g~~~~~~~--~~~~~~------- 102 (286)
T PLN02779 41 EALLFDCDGVLVETERDGHRVAFNDAFKEF------GLRPVEWD--VELYDELLN-IGGGKERMT--WYFNEN------- 102 (286)
T ss_pred cEEEEeCceeEEccccHHHHHHHHHHHHHc------CCCCCCCC--HHHHHHHHc-cCCChHHHH--HHHHHc-------
Confidence 689999999999999 88889999999999 56422100 001122444 777765543 222110
Q ss_pred ccccccccHHHHhhhhcchhhhhhhhcCCCHHHHHHHHHHHHHHHHHhhhhccccC-CCCCCCHHHHHH---hCCCcEEE
Q 029420 82 SSVSEGLTVEGILENWSKIKPVIMEDWSENRDALVDLFGKVRDEWMDKDLTTWIGA-NRFYPGIPDALK---FASSRIYI 157 (193)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~e~~~~~~~~~r~~y~~~y~~~~~~~-~~lypGV~e~L~---~~gi~laV 157 (193)
+.+.... .....+++..++....+.+.+.+.|.+.+... .++||||.++|+ ++|++++|
T Consensus 103 -----~~~~~~~------------~~~~~~~e~~~~~~~~~~~~~~~~y~~~~~~~~~~l~pGv~elL~~L~~~g~~l~I 165 (286)
T PLN02779 103 -----GWPTSTI------------EKAPKDEEERKELVDSLHDRKTELFKELIESGALPLRPGVLRLMDEALAAGIKVAV 165 (286)
T ss_pred -----CCCcccc------------ccCCccchhhHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCeEEE
Confidence 0000000 00001122222222223222222232222222 489999999998 88999999
Q ss_pred EcCcH--HHHHHHHHH
Q 029420 158 VTTKA--VSQMLYYES 171 (193)
Q Consensus 158 vTnK~--~a~~lL~~~ 171 (193)
+||++ .+..+++++
T Consensus 166 vTn~~~~~~~~~l~~~ 181 (286)
T PLN02779 166 CSTSNEKAVSKIVNTL 181 (286)
T ss_pred EeCCCHHHHHHHHHHh
Confidence 99998 777788765
No 21
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=99.48 E-value=2.5e-13 Score=123.77 Aligned_cols=123 Identities=15% Similarity=0.129 Sum_probs=79.9
Q ss_pred CCceEEEecCcccccChHHHHHHHHHHHHHhcCCCCCCCCcchhhhhhhhhhhccchhhccHHHHHHHHHHhhhcccccc
Q 029420 1 MADLYALDFDGVLCDSCGESSLSAVKAAKVRWPGLFDGVDSVIEDWIVDQMHILRPVVETGYENLLLVRLLLEIRMPSIR 80 (193)
Q Consensus 1 ~~~~vlFDlDGTLvDS~~di~~a~~~al~~l~~~~~~gl~~~~~~~~~~~~~~vr~~Ig~G~~~ll~~~~l~~~~~~~~~ 80 (193)
|.++|+|||||||+||.+.+..+.+.++++++.. +.... ..+.+.++.++|......+ .+.+..
T Consensus 240 m~k~vIFDlDGTLiDs~~~~~~a~~~~~~~~~~~---~~~~~-----~~~~~~~~~~~G~~~~~~~-~~l~~~------- 303 (459)
T PRK06698 240 MLQALIFDMDGTLFQTDKILELSLDDTFDHLRSL---QLWDT-----VTPIDKYREIMGVPLPKVW-EALLPD------- 303 (459)
T ss_pred hhhheeEccCCceecchhHHHHHHHHHHHHHhhh---cccCC-----CCCHHHHHHHcCCChHHHH-HHHhhh-------
Confidence 6689999999999999999999999999998311 01000 0013557778887766654 222210
Q ss_pred cccccccccHHHHhhhhcchhhhhhhhcCCCHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCHHHHHH---hCCCcEEE
Q 029420 81 KSSVSEGLTVEGILENWSKIKPVIMEDWSENRDALVDLFGKVRDEWMDKDLTTWIGANRFYPGIPDALK---FASSRIYI 157 (193)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~e~~~~~~~~~r~~y~~~y~~~~~~~~~lypGV~e~L~---~~gi~laV 157 (193)
.+ .+..++....|+++|.+.. .....++|||+.++|+ ++|++++|
T Consensus 304 ---------------------------~~--~~~~~~~~~~~~~~~~~~~---~~~~~~l~pG~~e~L~~Lk~~g~~l~I 351 (459)
T PRK06698 304 ---------------------------HS--LEIREQTDAYFLERLIENI---KSGKGALYPNVKEIFTYIKENNCSIYI 351 (459)
T ss_pred ---------------------------cc--hhHHHHHHHHHHHHhHHHH---hhcCCCcCCCHHHHHHHHHHCCCeEEE
Confidence 00 0001112223333332221 1234689999999999 88999999
Q ss_pred EcCcH--HHHHHHHHH
Q 029420 158 VTTKA--VSQMLYYES 171 (193)
Q Consensus 158 vTnK~--~a~~lL~~~ 171 (193)
+||++ .++.+++++
T Consensus 352 vS~~~~~~~~~~l~~~ 367 (459)
T PRK06698 352 ASNGLTEYLRAIVSYY 367 (459)
T ss_pred EeCCchHHHHHHHHHC
Confidence 99999 889998886
No 22
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=99.44 E-value=4.8e-13 Score=108.31 Aligned_cols=126 Identities=15% Similarity=0.082 Sum_probs=76.6
Q ss_pred ceEEEecCcccccChHHHHHHHHHHHHHhcCCCCCCCCcchhhhhhhhhhhccchhhccHH--------HHHHHHHHhhh
Q 029420 3 DLYALDFDGVLCDSCGESSLSAVKAAKVRWPGLFDGVDSVIEDWIVDQMHILRPVVETGYE--------NLLLVRLLLEI 74 (193)
Q Consensus 3 ~~vlFDlDGTLvDS~~di~~a~~~al~~l~~~~~~gl~~~~~~~~~~~~~~vr~~Ig~G~~--------~ll~~~~l~~~ 74 (193)
.+|+|||||||+||.+.+..+.+.+++++ |.+..+ .+.++.++|.|.. ..+ .+.+...
T Consensus 1 ~~viFD~DGTLiDs~~~~~~a~~~~~~~~------g~~~~~-------~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~ 66 (197)
T TIGR01548 1 QALVLDMDGVMADVSQSYRRAIIDTVEHF------GGVSVT-------HADIDHTKLAGNANNDWQLTHRLV-VDGLNSA 66 (197)
T ss_pred CceEEecCceEEechHHHHHHHHHHHHHH------cCCCCC-------HHHHHHHHHccCccCchHHHHHHH-HHhhhcc
Confidence 37999999999999999999999999999 433332 3567888887632 111 1222110
Q ss_pred cccccccccccccccHHHHhhhhcchhhhhhhhcCCCHHHHHHHHHHHHHHHHHh--hhhc---cccCCCCCCCHHHHHH
Q 029420 75 RMPSIRKSSVSEGLTVEGILENWSKIKPVIMEDWSENRDALVDLFGKVRDEWMDK--DLTT---WIGANRFYPGIPDALK 149 (193)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~e~~~~~~~~~r~~y~~~--y~~~---~~~~~~lypGV~e~L~ 149 (193)
. .. .+ .+....++....|++.|... |... -....++.|++.++|+
T Consensus 67 ------------~--~~----~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 116 (197)
T TIGR01548 67 ------------S--SE----RV------------RDAPTLEAVTAQFQALYQGVGYYRDLATLGLIEDETLLTPKGLLR 116 (197)
T ss_pred ------------c--ch----hc------------cCCccHHHHHHHHHHHHcCCcccccccchhhhccccccCHHHHHH
Confidence 0 00 00 00111223334455544321 1000 0012345666799998
Q ss_pred ---hCCCcEEEEcCcH--HHHHHHHHHh
Q 029420 150 ---FASSRIYIVTTKA--VSQMLYYESL 172 (193)
Q Consensus 150 ---~~gi~laVvTnK~--~a~~lL~~~~ 172 (193)
++|++++|+||++ .++.+|++++
T Consensus 117 ~l~~~g~~~~i~T~~~~~~~~~~l~~~g 144 (197)
T TIGR01548 117 ELHRAPKGMAVVTGRPRKDAAKFLTTHG 144 (197)
T ss_pred HHHHcCCcEEEECCCCHHHHHHHHHHcC
Confidence 7899999999998 8889998873
No 23
>PLN02940 riboflavin kinase
Probab=99.43 E-value=1.3e-12 Score=116.88 Aligned_cols=112 Identities=11% Similarity=0.015 Sum_probs=76.8
Q ss_pred ceEEEecCcccccChHHHHHHHHHHHHHhcCCCCCCCCcchhhhhhhhhhhccchhhccHHHHHHHHHHhhhcccccccc
Q 029420 3 DLYALDFDGVLCDSCGESSLSAVKAAKVRWPGLFDGVDSVIEDWIVDQMHILRPVVETGYENLLLVRLLLEIRMPSIRKS 82 (193)
Q Consensus 3 ~~vlFDlDGTLvDS~~di~~a~~~al~~l~~~~~~gl~~~~~~~~~~~~~~vr~~Ig~G~~~ll~~~~l~~~~~~~~~~~ 82 (193)
++|+|||||||+||.+.+..+.+.+++++ |.+.. .++++..+|......+ .+.+..
T Consensus 12 k~VIFDlDGTLvDt~~~~~~a~~~~~~~~------G~~~~--------~~~~~~~~G~~~~~~~-~~~~~~--------- 67 (382)
T PLN02940 12 SHVILDLDGTLLNTDGIVSDVLKAFLVKY------GKQWD--------GREAQKIVGKTPLEAA-ATVVED--------- 67 (382)
T ss_pred CEEEECCcCcCCcCHHHHHHHHHHHHHHc------CCCCC--------HHHHHHhcCCCHHHHH-HHHHHH---------
Confidence 68999999999999999999999999999 55432 2446777787665544 233221
Q ss_pred cccccccHHHHhhhhcchhhhhhhhcCCCHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCHHHHHH---hCCCcEEEEc
Q 029420 83 SVSEGLTVEGILENWSKIKPVIMEDWSENRDALVDLFGKVRDEWMDKDLTTWIGANRFYPGIPDALK---FASSRIYIVT 159 (193)
Q Consensus 83 ~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~e~~~~~~~~~r~~y~~~y~~~~~~~~~lypGV~e~L~---~~gi~laVvT 159 (193)
++.+. ..++....+++.+.+.+ ...++|||+.++|+ ++|++++|+|
T Consensus 68 -------------------------~~~~~-~~~~~~~~~~~~~~~~~-----~~~~l~pGv~elL~~Lk~~g~~l~IvT 116 (382)
T PLN02940 68 -------------------------YGLPC-STDEFNSEITPLLSEQW-----CNIKALPGANRLIKHLKSHGVPMALAS 116 (382)
T ss_pred -------------------------hCCCC-CHHHHHHHHHHHHHHHH-----ccCCCCcCHHHHHHHHHHCCCcEEEEe
Confidence 11110 01122334444444331 24689999999999 8999999999
Q ss_pred CcH--HHHHHHH
Q 029420 160 TKA--VSQMLYY 169 (193)
Q Consensus 160 nK~--~a~~lL~ 169 (193)
|++ .++..++
T Consensus 117 n~~~~~~~~~l~ 128 (382)
T PLN02940 117 NSPRANIEAKIS 128 (382)
T ss_pred CCcHHHHHHHHH
Confidence 998 6666665
No 24
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=99.42 E-value=2.1e-12 Score=105.90 Aligned_cols=115 Identities=14% Similarity=0.042 Sum_probs=76.0
Q ss_pred CceEEEecCcccccChHHHHHHHHHHHHHhcCCCCCCCCcchhhhhhhhhhhccchhhccHHHHHHHHHHhhhccccccc
Q 029420 2 ADLYALDFDGVLCDSCGESSLSAVKAAKVRWPGLFDGVDSVIEDWIVDQMHILRPVVETGYENLLLVRLLLEIRMPSIRK 81 (193)
Q Consensus 2 ~~~vlFDlDGTLvDS~~di~~a~~~al~~l~~~~~~gl~~~~~~~~~~~~~~vr~~Ig~G~~~ll~~~~l~~~~~~~~~~ 81 (193)
.++|+|||||||+||.+.+..+.+.+++++ |.+... .+..+.+.|......+ .+.+.
T Consensus 4 ~~~viFD~DGTL~d~~~~~~~a~~~~~~~~------g~~~~~-------~~~~~~~~g~~~~~~~-~~~~~--------- 60 (221)
T PRK10563 4 IEAVFFDCDGTLVDSEVICSRAYVTMFAEF------GITLSL-------EEVFKRFKGVKLYEII-DIISK--------- 60 (221)
T ss_pred CCEEEECCCCCCCCChHHHHHHHHHHHHHc------CCCCCH-------HHHHHHhcCCCHHHHH-HHHHH---------
Confidence 489999999999999999999999999998 555221 1233455565544443 12221
Q ss_pred ccccccccHHHHhhhhcchhhhhhhhcCC--CHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCHHHHHHhCCCcEEEEc
Q 029420 82 SSVSEGLTVEGILENWSKIKPVIMEDWSE--NRDALVDLFGKVRDEWMDKDLTTWIGANRFYPGIPDALKFASSRIYIVT 159 (193)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~~~~~~g~--~~e~~~~~~~~~r~~y~~~y~~~~~~~~~lypGV~e~L~~~gi~laVvT 159 (193)
.+|. +.++ ....|++.+...+ ....++||||.++|+..+++++|+|
T Consensus 61 -------------------------~~~~~~~~~~---~~~~~~~~~~~~~----~~~~~~~~gv~~~L~~L~~~~~ivT 108 (221)
T PRK10563 61 -------------------------EHGVTLAKAE---LEPVYRAEVARLF----DSELEPIAGANALLESITVPMCVVS 108 (221)
T ss_pred -------------------------HhCCCCCHHH---HHHHHHHHHHHHH----HccCCcCCCHHHHHHHcCCCEEEEe
Confidence 1121 1222 2233444443322 2346899999999996679999999
Q ss_pred CcH--HHHHHHHHH
Q 029420 160 TKA--VSQMLYYES 171 (193)
Q Consensus 160 nK~--~a~~lL~~~ 171 (193)
|++ .++..|+.+
T Consensus 109 n~~~~~~~~~l~~~ 122 (221)
T PRK10563 109 NGPVSKMQHSLGKT 122 (221)
T ss_pred CCcHHHHHHHHHhc
Confidence 998 788888776
No 25
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=99.39 E-value=5.6e-12 Score=100.57 Aligned_cols=114 Identities=11% Similarity=0.042 Sum_probs=72.2
Q ss_pred ceEEEecCcccccChHHHHHHHHHHHHHhcCCCCCCCCcchhhhhhhhhhhccchhhccHHHHHHHHHHhhhcccccccc
Q 029420 3 DLYALDFDGVLCDSCGESSLSAVKAAKVRWPGLFDGVDSVIEDWIVDQMHILRPVVETGYENLLLVRLLLEIRMPSIRKS 82 (193)
Q Consensus 3 ~~vlFDlDGTLvDS~~di~~a~~~al~~l~~~~~~gl~~~~~~~~~~~~~~vr~~Ig~G~~~ll~~~~l~~~~~~~~~~~ 82 (193)
++|+|||||||+||.+.+..+.+.+++++ |.+.. .+.++.+.|.....++ ...+...
T Consensus 6 ~~viFD~DGTLiDs~~~~~~a~~~~~~~~------g~~~~--------~~~~~~~~g~~~~~~~-~~~~~~~-------- 62 (188)
T PRK10725 6 AGLIFDMDGTILDTEPTHRKAWREVLGRY------GLQFD--------EQAMVALNGSPTWRIA-QAIIELN-------- 62 (188)
T ss_pred eEEEEcCCCcCccCHHHHHHHHHHHHHHc------CCCCC--------HHHHHHhcCCCHHHHH-HHHHHHh--------
Confidence 78999999999999999999999999999 55421 2345666776544443 1222110
Q ss_pred cccccccHHHHhhhhcchhhhhhhhcCCCHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCHHHHHH--hCCCcEEEEcC
Q 029420 83 SVSEGLTVEGILENWSKIKPVIMEDWSENRDALVDLFGKVRDEWMDKDLTTWIGANRFYPGIPDALK--FASSRIYIVTT 160 (193)
Q Consensus 83 ~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~e~~~~~~~~~r~~y~~~y~~~~~~~~~lypGV~e~L~--~~gi~laVvTn 160 (193)
+. ..+.+++.+ .+..+|.+.+ .....+|||+ ++|+ ..+++++|+||
T Consensus 63 ----~~--------------------~~~~~~~~~---~~~~~~~~~~----~~~~~~~~~~-e~L~~L~~~~~l~I~T~ 110 (188)
T PRK10725 63 ----QA--------------------DLDPHALAR---EKTEAVKSML----LDSVEPLPLI-EVVKAWHGRRPMAVGTG 110 (188)
T ss_pred ----CC--------------------CCCHHHHHH---HHHHHHHHHH----hccCCCccHH-HHHHHHHhCCCEEEEcC
Confidence 00 012222211 1222222221 2345789975 7777 55699999999
Q ss_pred cH--HHHHHHHHH
Q 029420 161 KA--VSQMLYYES 171 (193)
Q Consensus 161 K~--~a~~lL~~~ 171 (193)
++ .++..|+++
T Consensus 111 ~~~~~~~~~l~~~ 123 (188)
T PRK10725 111 SESAIAEALLAHL 123 (188)
T ss_pred CchHHHHHHHHhC
Confidence 98 888888887
No 26
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=99.38 E-value=7.7e-12 Score=103.94 Aligned_cols=123 Identities=16% Similarity=0.191 Sum_probs=77.0
Q ss_pred CCceEEEecCcccccChHHHHHHHHHHHHHhcCCCCCCCCcchhhhhhhhhhhccchhhccHHHHHHHHHHhhhcccccc
Q 029420 1 MADLYALDFDGVLCDSCGESSLSAVKAAKVRWPGLFDGVDSVIEDWIVDQMHILRPVVETGYENLLLVRLLLEIRMPSIR 80 (193)
Q Consensus 1 ~~~~vlFDlDGTLvDS~~di~~a~~~al~~l~~~~~~gl~~~~~~~~~~~~~~vr~~Ig~G~~~ll~~~~l~~~~~~~~~ 80 (193)
|.++|+||||||||||.+-...+...+++++ |++.. .+..+...|.+....+ +.+.....
T Consensus 1 ~~~avIFD~DGvLvDse~~~~~a~~~~~~~~------g~~~~--------~~~~~~~~g~~~~~~~--~~~~~~~~---- 60 (221)
T COG0637 1 MIKAVIFDMDGTLVDSEPLHARAWLEALKEY------GIEIS--------DEEIRELHGGGIARII--DLLRKLAA---- 60 (221)
T ss_pred CCcEEEEcCCCCcCcchHHHHHHHHHHHHHc------CCCCC--------HHHHHHHHCCChHHHH--HHHHHHhc----
Confidence 6799999999999999999999999999999 55532 2445666665433332 11111000
Q ss_pred cccccccccHHHHhhhhcchhhhhhhhcCCCHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCHHHHHH---hCCCcEEE
Q 029420 81 KSSVSEGLTVEGILENWSKIKPVIMEDWSENRDALVDLFGKVRDEWMDKDLTTWIGANRFYPGIPDALK---FASSRIYI 157 (193)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~e~~~~~~~~~r~~y~~~y~~~~~~~~~lypGV~e~L~---~~gi~laV 157 (193)
+.. +.+.. ..-..++..... .....+++|||.++|+ ++|+++++
T Consensus 61 ------~~~-------------------~~~~~---~~~~~~~~~~~~-----~~~~~~~~pGv~~~l~~L~~~~i~~av 107 (221)
T COG0637 61 ------GED-------------------PADLA---ELERLLYEAEAL-----ELEGLKPIPGVVELLEQLKARGIPLAV 107 (221)
T ss_pred ------CCc-------------------ccCHH---HHHHHHHHHHHh-----hhcCCCCCccHHHHHHHHHhcCCcEEE
Confidence 000 00000 011111211111 1345689999999999 78899999
Q ss_pred EcCcH--HHHHHHHHH-hHHHH
Q 029420 158 VTTKA--VSQMLYYES-LQELQ 176 (193)
Q Consensus 158 vTnK~--~a~~lL~~~-~~~~~ 176 (193)
+||.+ .++.+|+.+ +.+.+
T Consensus 108 aS~s~~~~~~~~L~~~gl~~~f 129 (221)
T COG0637 108 ASSSPRRAAERVLARLGLLDYF 129 (221)
T ss_pred ecCChHHHHHHHHHHccChhhc
Confidence 99998 888888776 34443
No 27
>PHA02597 30.2 hypothetical protein; Provisional
Probab=99.36 E-value=2.8e-12 Score=103.57 Aligned_cols=106 Identities=15% Similarity=0.070 Sum_probs=65.7
Q ss_pred CCceEEEecCcccccChHHHHHHHHHHHHHhcCCCCCCCCcchhhhhhhhhhhccchhhccHHHHHHHHHHhhhcccccc
Q 029420 1 MADLYALDFDGVLCDSCGESSLSAVKAAKVRWPGLFDGVDSVIEDWIVDQMHILRPVVETGYENLLLVRLLLEIRMPSIR 80 (193)
Q Consensus 1 ~~~~vlFDlDGTLvDS~~di~~a~~~al~~l~~~~~~gl~~~~~~~~~~~~~~vr~~Ig~G~~~ll~~~~l~~~~~~~~~ 80 (193)
|.|+|+|||||||+|+. .+++.+++++ |++ .++++..+|.+....+. ..
T Consensus 1 m~k~viFDlDGTLiD~~----~~~~~~~~~~------g~~----------~~~~~~~~g~~~~~~~~-~~---------- 49 (197)
T PHA02597 1 MKPTILTDVDGVLLSWQ----SGLPYFAQKY------NIP----------TDHILKMIQDERFRDPG-EL---------- 49 (197)
T ss_pred CCcEEEEecCCceEchh----hccHHHHHhc------CCC----------HHHHHHHHhHhhhcCHH-HH----------
Confidence 88999999999999954 4567888888 554 14556666654332220 11
Q ss_pred cccccccccHHHHhhhhcchhhhhhhhcCCCHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCHHHHHH--hCCCcEEEE
Q 029420 81 KSSVSEGLTVEGILENWSKIKPVIMEDWSENRDALVDLFGKVRDEWMDKDLTTWIGANRFYPGIPDALK--FASSRIYIV 158 (193)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~e~~~~~~~~~r~~y~~~y~~~~~~~~~lypGV~e~L~--~~gi~laVv 158 (193)
++.+.++..+.+..|+.. .+....++|||+.++|+ .++++++++
T Consensus 50 ---------------------------~~~~~~~~~~~~~~~~~~-------~~~~~~~~~pG~~e~L~~L~~~~~~~i~ 95 (197)
T PHA02597 50 ---------------------------FGCDQELAKKLIEKYNNS-------DFIRYLSAYDDALDVINKLKEDYDFVAV 95 (197)
T ss_pred ---------------------------hcccHHHHHHHhhhhhHH-------HHHHhccCCCCHHHHHHHHHhcCCEEEE
Confidence 112223333444444421 22345689999999999 444678999
Q ss_pred cCcH-HHHH-HHHHH
Q 029420 159 TTKA-VSQM-LYYES 171 (193)
Q Consensus 159 TnK~-~a~~-lL~~~ 171 (193)
||++ .+.. +++++
T Consensus 96 Tn~~~~~~~~~~~~~ 110 (197)
T PHA02597 96 TALGDSIDALLNRQF 110 (197)
T ss_pred eCCccchhHHHHhhC
Confidence 9988 3333 44444
No 28
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=99.33 E-value=6.9e-12 Score=104.84 Aligned_cols=126 Identities=11% Similarity=0.047 Sum_probs=68.6
Q ss_pred ceEEEecCcccccChHHHHHHHHHHHHHhcCCCCCCCCcchhhhhhhhhhhccchhhccHHHHHHHHHHhhhcccccccc
Q 029420 3 DLYALDFDGVLCDSCGESSLSAVKAAKVRWPGLFDGVDSVIEDWIVDQMHILRPVVETGYENLLLVRLLLEIRMPSIRKS 82 (193)
Q Consensus 3 ~~vlFDlDGTLvDS~~di~~a~~~al~~l~~~~~~gl~~~~~~~~~~~~~~vr~~Ig~G~~~ll~~~~l~~~~~~~~~~~ 82 (193)
++|+|||||||+||.+-+..+.+.+++.++. ..+.... .-....+.++..++.......
T Consensus 11 k~iiFDlDGTL~D~~~~~~~a~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---------------- 69 (238)
T PRK10748 11 SALTFDLDDTLYDNRPVILRTEQEALAFVQN----YHPALRS-FQNEDLQRLRQALREAEPEIY---------------- 69 (238)
T ss_pred eeEEEcCcccccCChHHHHHHHHHHHHHHHH----hCcchhh-CCHHHHHHHHHHHHHhCchhh----------------
Confidence 7899999999999999999999988877720 0111000 000011222222221111100
Q ss_pred cccccccHHHHhhhhcchhhhhhhhcCCCHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCHHHHHH--hCCCcEEEEcC
Q 029420 83 SVSEGLTVEGILENWSKIKPVIMEDWSENRDALVDLFGKVRDEWMDKDLTTWIGANRFYPGIPDALK--FASSRIYIVTT 160 (193)
Q Consensus 83 ~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~e~~~~~~~~~r~~y~~~y~~~~~~~~~lypGV~e~L~--~~gi~laVvTn 160 (193)
..+..........+++.+|++.+..+...+.+...|.. |.....+||||.++|+ +.+++++|+||
T Consensus 70 --------~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~gv~~~L~~L~~~~~l~i~Tn 136 (238)
T PRK10748 70 --------HDVTRWRWRAIEQAMLDAGLSAEEASAGADAAMINFAK-----WRSRIDVPQATHDTLKQLAKKWPLVAITN 136 (238)
T ss_pred --------CcHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH-----HhhcCCCCccHHHHHHHHHcCCCEEEEEC
Confidence 00000001112334555676655433333333333322 2334689999999999 66799999999
Q ss_pred cH
Q 029420 161 KA 162 (193)
Q Consensus 161 K~ 162 (193)
++
T Consensus 137 ~~ 138 (238)
T PRK10748 137 GN 138 (238)
T ss_pred CC
Confidence 87
No 29
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=99.33 E-value=1.3e-11 Score=100.89 Aligned_cols=35 Identities=26% Similarity=0.245 Sum_probs=30.8
Q ss_pred CCCCCCCHHHHHH---hCCCcEEEEcCcH--HHHHHHHHH
Q 029420 137 ANRFYPGIPDALK---FASSRIYIVTTKA--VSQMLYYES 171 (193)
Q Consensus 137 ~~~lypGV~e~L~---~~gi~laVvTnK~--~a~~lL~~~ 171 (193)
..++|||+.++|+ ++|++++|+||++ .+...++++
T Consensus 92 ~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~ 131 (221)
T TIGR02253 92 YLRVYPGVRDTLMELRESGYRLGIITDGLPVKQWEKLERL 131 (221)
T ss_pred hCCCCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhC
Confidence 4689999999999 7899999999997 777778776
No 30
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=99.33 E-value=1.1e-11 Score=100.21 Aligned_cols=129 Identities=15% Similarity=0.146 Sum_probs=72.5
Q ss_pred ceEEEecCcccccChHHHHHHHHHHHHHhcCCCCCCCCcchhhhhhhhh-hhccch------hhccHHHHHHHHHHhhhc
Q 029420 3 DLYALDFDGVLCDSCGESSLSAVKAAKVRWPGLFDGVDSVIEDWIVDQM-HILRPV------VETGYENLLLVRLLLEIR 75 (193)
Q Consensus 3 ~~vlFDlDGTLvDS~~di~~a~~~al~~l~~~~~~gl~~~~~~~~~~~~-~~vr~~------Ig~G~~~ll~~~~l~~~~ 75 (193)
++|+|||||||+||.+....+.+.+++++ |++..+ +.+...+ +..+.+ .|.+
T Consensus 1 k~viFDlDGTL~d~~~~~~~a~~~~~~~~------g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-------------- 59 (203)
T TIGR02252 1 KLITFDAVGTLLALKEPVGEVYCEIARKY------GVEVSP-DELEQAFRRAFKAMSEAFPNFGFS-------------- 59 (203)
T ss_pred CeEEEecCCceeeeCCCHHHHHHHHHHHh------CCCCCH-HHHHHHHHHHHHHHHhhCCCCCCC--------------
Confidence 68999999999999999999999999999 565322 1111010 001110 0000
Q ss_pred ccccccccccccccHHHHhhhhcchhhhhhhhcCC-CHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCHHHHHH---hC
Q 029420 76 MPSIRKSSVSEGLTVEGILENWSKIKPVIMEDWSE-NRDALVDLFGKVRDEWMDKDLTTWIGANRFYPGIPDALK---FA 151 (193)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~-~~e~~~~~~~~~r~~y~~~y~~~~~~~~~lypGV~e~L~---~~ 151 (193)
.+.+..+ -|..+....+...|. +.+.+.+.+..++++|.. ....++|||+.++|+ ++
T Consensus 60 ----------~g~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~g~~~~l~~L~~~ 120 (203)
T TIGR02252 60 ----------SGLTPQQ---WWQKLVRDTFGRAGVPDPESFEKIFEELYSYFAT------PEPWQVYPDAIKLLKDLRER 120 (203)
T ss_pred ----------CCCCHHH---HHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcC------CCcceeCcCHHHHHHHHHHC
Confidence 0111100 000111111122221 223334444444444321 123479999999999 78
Q ss_pred CCcEEEEcCcH-HHHHHHHHH
Q 029420 152 SSRIYIVTTKA-VSQMLYYES 171 (193)
Q Consensus 152 gi~laVvTnK~-~a~~lL~~~ 171 (193)
|++++|+||++ .++.+|+++
T Consensus 121 g~~~~i~Sn~~~~~~~~l~~~ 141 (203)
T TIGR02252 121 GLILGVISNFDSRLRGLLEAL 141 (203)
T ss_pred CCEEEEEeCCchhHHHHHHHC
Confidence 99999999998 667777776
No 31
>PRK09449 dUMP phosphatase; Provisional
Probab=99.30 E-value=1.9e-11 Score=100.35 Aligned_cols=35 Identities=17% Similarity=0.182 Sum_probs=30.4
Q ss_pred CCCCCCCHHHHHH--hCCCcEEEEcCcH--HHHHHHHHH
Q 029420 137 ANRFYPGIPDALK--FASSRIYIVTTKA--VSQMLYYES 171 (193)
Q Consensus 137 ~~~lypGV~e~L~--~~gi~laVvTnK~--~a~~lL~~~ 171 (193)
..++|||+.++|+ .+|++++|+||++ .++..|+++
T Consensus 93 ~~~~~~g~~~~L~~L~~~~~~~i~Tn~~~~~~~~~l~~~ 131 (224)
T PRK09449 93 ICTPLPGAVELLNALRGKVKMGIITNGFTELQQVRLERT 131 (224)
T ss_pred cCccCccHHHHHHHHHhCCeEEEEeCCcHHHHHHHHHhC
Confidence 3679999999999 7789999999998 777777776
No 32
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.29 E-value=1.9e-11 Score=121.59 Aligned_cols=120 Identities=18% Similarity=0.232 Sum_probs=79.9
Q ss_pred CceEEEecCcccccChHHHHHHHHHHHHHhcCCCCCCCCcchhhhhhhhhhhccchhhccHHHHHHHHHHhhhccccccc
Q 029420 2 ADLYALDFDGVLCDSCGESSLSAVKAAKVRWPGLFDGVDSVIEDWIVDQMHILRPVVETGYENLLLVRLLLEIRMPSIRK 81 (193)
Q Consensus 2 ~~~vlFDlDGTLvDS~~di~~a~~~al~~l~~~~~~gl~~~~~~~~~~~~~~vr~~Ig~G~~~ll~~~~l~~~~~~~~~~ 81 (193)
.++|+|||||||+||.+.+..+.+.+++++ |++.. .++++.++|.+...++ .......
T Consensus 75 ikaVIFDlDGTLiDS~~~~~~a~~~~~~~~------G~~it--------~e~~~~~~G~~~~~~~-~~~~~~~------- 132 (1057)
T PLN02919 75 VSAVLFDMDGVLCNSEEPSRRAAVDVFAEM------GVEVT--------VEDFVPFMGTGEANFL-GGVASVK------- 132 (1057)
T ss_pred CCEEEECCCCCeEeChHHHHHHHHHHHHHc------CCCCC--------HHHHHHHhCCCHHHHH-HHHHHhc-------
Confidence 378999999999999999999999999999 56532 2446677787755543 1111000
Q ss_pred ccccccccHHHHhhhhcchhhhhhhhcCCCHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCHHHHHH---hCCCcEEEE
Q 029420 82 SSVSEGLTVEGILENWSKIKPVIMEDWSENRDALVDLFGKVRDEWMDKDLTTWIGANRFYPGIPDALK---FASSRIYIV 158 (193)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~e~~~~~~~~~r~~y~~~y~~~~~~~~~lypGV~e~L~---~~gi~laVv 158 (193)
+.+ +++.+ +..+.+.+.|.+.|... ....+|||+.++|+ ++|++++|+
T Consensus 133 -----~l~-------------------~~~~~---~~~~~~~~~~~~~~~~~--~~~~~~pG~~elL~~Lk~~G~~l~Iv 183 (1057)
T PLN02919 133 -----GVK-------------------GFDPD---AAKKRFFEIYLEKYAKP--NSGIGFPGALELITQCKNKGLKVAVA 183 (1057)
T ss_pred -----CCC-------------------CCCHH---HHHHHHHHHHHHHhhhc--ccCccCccHHHHHHHHHhCCCeEEEE
Confidence 000 11111 22233344444444321 12358999999999 899999999
Q ss_pred cCcH--HHHHHHHHHh
Q 029420 159 TTKA--VSQMLYYESL 172 (193)
Q Consensus 159 TnK~--~a~~lL~~~~ 172 (193)
||+. .++.+|+++.
T Consensus 184 Sn~~~~~~~~~L~~~g 199 (1057)
T PLN02919 184 SSADRIKVDANLAAAG 199 (1057)
T ss_pred eCCcHHHHHHHHHHcC
Confidence 9998 8888888874
No 33
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=99.22 E-value=2.4e-11 Score=97.09 Aligned_cols=35 Identities=14% Similarity=0.030 Sum_probs=29.5
Q ss_pred CCCCCCCHHHHHHhCCCcEEEEcCcH--HHHHHHHHH
Q 029420 137 ANRFYPGIPDALKFASSRIYIVTTKA--VSQMLYYES 171 (193)
Q Consensus 137 ~~~lypGV~e~L~~~gi~laVvTnK~--~a~~lL~~~ 171 (193)
..++|||+.++|+....+++|+||++ .+..+++++
T Consensus 82 ~~~~~~g~~~~L~~L~~~~~i~Tn~~~~~~~~~l~~~ 118 (184)
T TIGR01993 82 KLKPDPELRNLLLRLPGRKIIFTNGDRAHARRALNRL 118 (184)
T ss_pred hCCCCHHHHHHHHhCCCCEEEEeCCCHHHHHHHHHHc
Confidence 45799999999994336899999998 888888887
No 34
>PLN02954 phosphoserine phosphatase
Probab=99.19 E-value=1.1e-10 Score=95.77 Aligned_cols=36 Identities=22% Similarity=0.302 Sum_probs=32.4
Q ss_pred CCCCCCHHHHHH---hCCCcEEEEcCcH--HHHHHHHHHhH
Q 029420 138 NRFYPGIPDALK---FASSRIYIVTTKA--VSQMLYYESLQ 173 (193)
Q Consensus 138 ~~lypGV~e~L~---~~gi~laVvTnK~--~a~~lL~~~~~ 173 (193)
.++|||+.++|+ ++|++++|+||++ .++.++++++-
T Consensus 83 ~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~gi 123 (224)
T PLN02954 83 PRLSPGIPELVKKLRARGTDVYLVSGGFRQMIAPVAAILGI 123 (224)
T ss_pred CCCCccHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHhCC
Confidence 469999999999 8899999999999 89999998743
No 35
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=99.17 E-value=8.7e-11 Score=96.86 Aligned_cols=35 Identities=11% Similarity=0.115 Sum_probs=32.3
Q ss_pred CCCCCCCHHHHHH---hCCCcEEEEcCcH--HHHHHHHHH
Q 029420 137 ANRFYPGIPDALK---FASSRIYIVTTKA--VSQMLYYES 171 (193)
Q Consensus 137 ~~~lypGV~e~L~---~~gi~laVvTnK~--~a~~lL~~~ 171 (193)
..++|||+.++|+ ++|++++|+||+. +++++|+++
T Consensus 72 ~~~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~ 111 (219)
T PRK09552 72 TAEIREGFHEFVQFVKENNIPFYVVSGGMDFFVYPLLQGL 111 (219)
T ss_pred CCCcCcCHHHHHHHHHHcCCeEEEECCCcHHHHHHHHHHh
Confidence 3689999999999 8999999999999 899999886
No 36
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=99.16 E-value=2.9e-10 Score=92.58 Aligned_cols=30 Identities=13% Similarity=0.091 Sum_probs=28.1
Q ss_pred CceEEEecCcccccChHHHHHHHHHHHHHh
Q 029420 2 ADLYALDFDGVLCDSCGESSLSAVKAAKVR 31 (193)
Q Consensus 2 ~~~vlFDlDGTLvDS~~di~~a~~~al~~l 31 (193)
.++|+|||||||+||.+.+..+.+.+++.+
T Consensus 1 ~k~viFD~DGTL~d~~~~~~~~~~~~~~~~ 30 (224)
T TIGR02254 1 YKTLLFDLDDTILDFQAAEALALRLLFEDQ 30 (224)
T ss_pred CCEEEEcCcCcccccchHHHHHHHHHHHHh
Confidence 478999999999999999999999999998
No 37
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=99.14 E-value=9.9e-11 Score=98.79 Aligned_cols=40 Identities=18% Similarity=0.107 Sum_probs=34.2
Q ss_pred cccCCCCCCCHHHHHH---hCCCcEEEEcCc----H--HHHHHHHHHhH
Q 029420 134 WIGANRFYPGIPDALK---FASSRIYIVTTK----A--VSQMLYYESLQ 173 (193)
Q Consensus 134 ~~~~~~lypGV~e~L~---~~gi~laVvTnK----~--~a~~lL~~~~~ 173 (193)
+...+.++||+.++|+ ++|++++||||| + .++.++++++-
T Consensus 109 ~~~~s~p~~~a~elL~~l~~~G~~i~iVTnr~~~k~~~~a~~ll~~lGi 157 (237)
T TIGR01672 109 WDEFSIPKEVARQLIDMHQRRGDAIFFVTGRTPGKTDTVSKTLAKNFHI 157 (237)
T ss_pred cccCCcchhHHHHHHHHHHHCCCEEEEEeCCCCCcCHHHHHHHHHHhCC
Confidence 3456789999999999 999999999998 5 88888888743
No 38
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=99.13 E-value=3.7e-10 Score=87.36 Aligned_cols=28 Identities=21% Similarity=0.134 Sum_probs=26.7
Q ss_pred eEEEecCcccccChHHHHHHHHHHHHHh
Q 029420 4 LYALDFDGVLCDSCGESSLSAVKAAKVR 31 (193)
Q Consensus 4 ~vlFDlDGTLvDS~~di~~a~~~al~~l 31 (193)
+|+||+||||+||.+.+..+.+.+++++
T Consensus 1 ~iifD~DGTL~d~~~~~~~~~~~~~~~~ 28 (154)
T TIGR01549 1 AILFDIDGTLVDSSFAIRRAFEETLEEF 28 (154)
T ss_pred CeEecCCCcccccHHHHHHHHHHHHHHh
Confidence 4899999999999999999999999999
No 39
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=99.11 E-value=1.1e-10 Score=90.00 Aligned_cols=109 Identities=22% Similarity=0.305 Sum_probs=70.5
Q ss_pred EEEecCcccccChHHHHHHHHH-HHHHhcCCCCCCCCcchhhhhhhhhhhccchhhccHHHHHHHHHHhhhccccccccc
Q 029420 5 YALDFDGVLCDSCGESSLSAVK-AAKVRWPGLFDGVDSVIEDWIVDQMHILRPVVETGYENLLLVRLLLEIRMPSIRKSS 83 (193)
Q Consensus 5 vlFDlDGTLvDS~~di~~a~~~-al~~l~~~~~~gl~~~~~~~~~~~~~~vr~~Ig~G~~~ll~~~~l~~~~~~~~~~~~ 83 (193)
|+||+||||+|+-+.+..+... +++.+ |.+ . ..+.++...+.+.+..+ .+.+..
T Consensus 1 iifD~dgtL~d~~~~~~~~~~~~~~~~~------~~~-~-------~~~~~~~~~~~~~~~~~-~~~~~~---------- 55 (176)
T PF13419_consen 1 IIFDLDGTLVDTDPAIFRALQRLALEEF------GLE-I-------SAEELRELFGKSYEEAL-ERLLER---------- 55 (176)
T ss_dssp EEEESBTTTEEHHHHHHHHHHHHHHHHT------THH-H-------HHHHHHHHTTSHHHHHH-HHHHHH----------
T ss_pred cEEECCCCcEeCHHHHHHHHHHHHHHHh------CCC-C-------CHHHHHHHhCCCHHHHH-HHhhhc----------
Confidence 7999999999999988888886 46667 333 1 23455555565555444 222211
Q ss_pred ccccccHHHHhhhhcchhhhhhhhcCCCHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCHHHHHH---hCCCcEEEEcC
Q 029420 84 VSEGLTVEGILENWSKIKPVIMEDWSENRDALVDLFGKVRDEWMDKDLTTWIGANRFYPGIPDALK---FASSRIYIVTT 160 (193)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~~~~~~~g~~~e~~~~~~~~~r~~y~~~y~~~~~~~~~lypGV~e~L~---~~gi~laVvTn 160 (193)
++.+...+.+.+ +++. .....++|||+.++|+ ++|++++|+||
T Consensus 56 ------------------------~~~~~~~~~~~~---~~~~-------~~~~~~~~~~~~~~L~~l~~~~~~~~i~Sn 101 (176)
T PF13419_consen 56 ------------------------FGIDPEEIQELF---REYN-------LESKLQPYPGVRELLERLKAKGIPLVIVSN 101 (176)
T ss_dssp ------------------------HHHHHHHHHHHH---HHHH-------HHGGEEESTTHHHHHHHHHHTTSEEEEEES
T ss_pred ------------------------cchhHHHHHHHh---hhhh-------hhhccchhhhhhhhhhhcccccceeEEeec
Confidence 111111122222 2221 1234689999999999 69999999999
Q ss_pred cH--HHHHHHHHHh
Q 029420 161 KA--VSQMLYYESL 172 (193)
Q Consensus 161 K~--~a~~lL~~~~ 172 (193)
.+ .++.+++.+.
T Consensus 102 ~~~~~~~~~l~~~~ 115 (176)
T PF13419_consen 102 GSRERIERVLERLG 115 (176)
T ss_dssp SEHHHHHHHHHHTT
T ss_pred CCcccccccccccc
Confidence 99 7888888874
No 40
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=99.10 E-value=1.7e-09 Score=89.37 Aligned_cols=55 Identities=18% Similarity=0.397 Sum_probs=45.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCHHHHHH----hCCCcEEEEcCcH--HHHHHHHHH
Q 029420 109 SENRDALVDLFGKVRDEWMDKDLTTWIGANRFYPGIPDALK----FASSRIYIVTTKA--VSQMLYYES 171 (193)
Q Consensus 109 g~~~e~~~~~~~~~r~~y~~~y~~~~~~~~~lypGV~e~L~----~~gi~laVvTnK~--~a~~lL~~~ 171 (193)
|.+.+++++..+.|++.|.+ .+.+|||+.++|+ ++|++++|||||+ .++++.+..
T Consensus 72 g~~~~~l~~~~~~f~~~~~~--------~~~l~pga~e~L~~~l~~~G~~v~IvSas~~~~~~~ia~~~ 132 (210)
T TIGR01545 72 GHREAHLQDLEADFVAAFRD--------KVTAFPLVAERLRQYLESSDADIWLITGSPQPLVEAVYFDS 132 (210)
T ss_pred CCCHHHHHHHHHHHHHHHHH--------hCCCCccHHHHHHHHHHhCCCEEEEEcCCcHHHHHHHHHhc
Confidence 77888888888888887753 2478999999994 5799999999999 788888663
No 41
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=99.06 E-value=3.2e-10 Score=92.29 Aligned_cols=26 Identities=15% Similarity=0.227 Sum_probs=23.8
Q ss_pred CCCCCCCHHHHHH---hCCCcEEEEcCcH
Q 029420 137 ANRFYPGIPDALK---FASSRIYIVTTKA 162 (193)
Q Consensus 137 ~~~lypGV~e~L~---~~gi~laVvTnK~ 162 (193)
..++|||+.++|+ ++|++++|+||++
T Consensus 92 ~~~~~~~~~~~L~~L~~~g~~l~i~Sn~~ 120 (211)
T TIGR02247 92 NTKLRPSMMAAIKTLRAKGFKTACITNNF 120 (211)
T ss_pred ccccChhHHHHHHHHHHCCCeEEEEeCCC
Confidence 4679999999999 7899999999987
No 42
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=99.05 E-value=4.9e-10 Score=89.82 Aligned_cols=36 Identities=6% Similarity=-0.062 Sum_probs=32.3
Q ss_pred CCCCCCCHHHHHH---hCCCcEEEEcCcH--HHHHHHHHHh
Q 029420 137 ANRFYPGIPDALK---FASSRIYIVTTKA--VSQMLYYESL 172 (193)
Q Consensus 137 ~~~lypGV~e~L~---~~gi~laVvTnK~--~a~~lL~~~~ 172 (193)
..++|||+.++|+ ++|++++|+||+. +++.++++++
T Consensus 78 ~~~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g 118 (201)
T TIGR01491 78 EISLRDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKLN 118 (201)
T ss_pred hCCCCccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhC
Confidence 3579999999999 7899999999999 8899988874
No 43
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=99.04 E-value=5.5e-10 Score=90.08 Aligned_cols=35 Identities=17% Similarity=0.192 Sum_probs=30.7
Q ss_pred CCCCCCHHHHHH---hCCCcEEEEcCcH--HHHHHHHHHh
Q 029420 138 NRFYPGIPDALK---FASSRIYIVTTKA--VSQMLYYESL 172 (193)
Q Consensus 138 ~~lypGV~e~L~---~~gi~laVvTnK~--~a~~lL~~~~ 172 (193)
.++|||+.++|+ ++|++++|+||.+ .++.++++++
T Consensus 91 ~~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~g 130 (198)
T TIGR01428 91 LPPHPDVPAGLRALKERGYRLAILSNGSPAMLKSLVKHAG 130 (198)
T ss_pred CCCCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHCC
Confidence 479999999999 7799999999998 7888888763
No 44
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=98.96 E-value=3.6e-09 Score=85.54 Aligned_cols=35 Identities=14% Similarity=0.062 Sum_probs=31.1
Q ss_pred CCCCCCCHHHHHH---hCCCcEEEEcCcH--HHHHHHHHHh
Q 029420 137 ANRFYPGIPDALK---FASSRIYIVTTKA--VSQMLYYESL 172 (193)
Q Consensus 137 ~~~lypGV~e~L~---~~gi~laVvTnK~--~a~~lL~~~~ 172 (193)
..++|||+.++|+ ++ ++++|+||+. +++.+++++.
T Consensus 66 ~~~~~pg~~e~L~~L~~~-~~~~IvS~~~~~~~~~~l~~~g 105 (205)
T PRK13582 66 TLDPLPGAVEFLDWLRER-FQVVILSDTFYEFAGPLMRQLG 105 (205)
T ss_pred hCCCCCCHHHHHHHHHhc-CCEEEEeCCcHHHHHHHHHHcC
Confidence 4679999999999 56 9999999999 8999999884
No 45
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=98.96 E-value=3.6e-09 Score=87.93 Aligned_cols=36 Identities=8% Similarity=-0.029 Sum_probs=31.4
Q ss_pred cCCCCCCCHHHHHH---hCCCcEEEEcCcH--HHHHHHHHH
Q 029420 136 GANRFYPGIPDALK---FASSRIYIVTTKA--VSQMLYYES 171 (193)
Q Consensus 136 ~~~~lypGV~e~L~---~~gi~laVvTnK~--~a~~lL~~~ 171 (193)
...++|||+.++|+ ++|++++|+||++ .++..++++
T Consensus 90 ~~~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l~~~ 130 (224)
T PRK14988 90 PRAVLREDTVPFLEALKASGKRRILLTNAHPHNLAVKLEHT 130 (224)
T ss_pred ccCCcCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHHHHC
Confidence 35789999999999 8899999999988 777777776
No 46
>PLN02811 hydrolase
Probab=98.95 E-value=8.3e-09 Score=84.99 Aligned_cols=101 Identities=16% Similarity=0.119 Sum_probs=64.0
Q ss_pred cCcccccChHHHHHHHHHHHHHhcCCCCCCCCcchhhhhhhhhhhccchhhccHHHHHHHHHHhhhcccccccccccccc
Q 029420 9 FDGVLCDSCGESSLSAVKAAKVRWPGLFDGVDSVIEDWIVDQMHILRPVVETGYENLLLVRLLLEIRMPSIRKSSVSEGL 88 (193)
Q Consensus 9 lDGTLvDS~~di~~a~~~al~~l~~~~~~gl~~~~~~~~~~~~~~vr~~Ig~G~~~ll~~~~l~~~~~~~~~~~~~~~~~ 88 (193)
|||||+||.+.+..+.+.+++++ |++ .+ .+.++.++|.+....+ ...+... +.
T Consensus 1 ~DGTL~Ds~~~~~~a~~~~~~~~------g~~-~~-------~~~~~~~~G~~~~~~~-~~~~~~~------------~~ 53 (220)
T PLN02811 1 MDGLLLDTEKFYTEVQEKILARY------GKT-FD-------WSLKAKMMGKKAIEAA-RIFVEES------------GL 53 (220)
T ss_pred CCCcceecHHHHHHHHHHHHHHc------CCC-CC-------HHHHHHccCCCHHHHH-HHHHHHh------------CC
Confidence 79999999999999999999999 564 21 2456778887765554 1222110 00
Q ss_pred cHHHHhhhhcchhhhhhhhcCCCHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCHHHHHH---hCCCcEEEEcCcH
Q 029420 89 TVEGILENWSKIKPVIMEDWSENRDALVDLFGKVRDEWMDKDLTTWIGANRFYPGIPDALK---FASSRIYIVTTKA 162 (193)
Q Consensus 89 ~~~~~~~~~~~l~~~~~~~~g~~~e~~~~~~~~~r~~y~~~y~~~~~~~~~lypGV~e~L~---~~gi~laVvTnK~ 162 (193)
+. ..+.+++.+ ++..+...+ .....+||||.++|+ ++|++++|+||+.
T Consensus 54 ~~------------------~~~~~~~~~----~~~~~~~~~----~~~~~l~~gv~e~l~~L~~~g~~~~i~S~~~ 104 (220)
T PLN02811 54 SD------------------SLSPEDFLV----EREAMLQDL----FPTSDLMPGAERLVRHLHAKGIPIAIATGSH 104 (220)
T ss_pred CC------------------CCCHHHHHH----HHHHHHHHH----HhhCCCCccHHHHHHHHHHCCCcEEEEeCCc
Confidence 00 001121212 122222211 224689999999999 8899999999987
No 47
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=98.93 E-value=2.9e-09 Score=84.02 Aligned_cols=31 Identities=16% Similarity=0.219 Sum_probs=26.6
Q ss_pred CCCCCCCHHHHHHhCCCcEEEEcCcH--HHHHHHHHH
Q 029420 137 ANRFYPGIPDALKFASSRIYIVTTKA--VSQMLYYES 171 (193)
Q Consensus 137 ~~~lypGV~e~L~~~gi~laVvTnK~--~a~~lL~~~ 171 (193)
...+|||+.++|+ +++|+||++ ..+.+++++
T Consensus 88 ~~~~~~g~~~~L~----~~~i~Tn~~~~~~~~~l~~~ 120 (175)
T TIGR01493 88 NLPPWPDSAAALA----RVAILSNASHWAFDQFAQQA 120 (175)
T ss_pred cCCCCCchHHHHH----HHhhhhCCCHHHHHHHHHHC
Confidence 3579999999996 589999999 778888887
No 48
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=98.91 E-value=5.3e-09 Score=85.48 Aligned_cols=34 Identities=6% Similarity=0.062 Sum_probs=30.6
Q ss_pred CCCCCCHHHHHH---hCCCcEEEEcCcH--HHHHHHHHH
Q 029420 138 NRFYPGIPDALK---FASSRIYIVTTKA--VSQMLYYES 171 (193)
Q Consensus 138 ~~lypGV~e~L~---~~gi~laVvTnK~--~a~~lL~~~ 171 (193)
.+++||+.++|+ ++|++++|+||.. .++.+++.+
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~ 122 (219)
T TIGR00338 84 LPLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVKDKL 122 (219)
T ss_pred CCcCCCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHc
Confidence 579999999999 7899999999988 888888876
No 49
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=98.65 E-value=1.2e-07 Score=76.79 Aligned_cols=24 Identities=8% Similarity=0.261 Sum_probs=22.7
Q ss_pred CCCCCHHHHHH---hCCCcEEEEcCcH
Q 029420 139 RFYPGIPDALK---FASSRIYIVTTKA 162 (193)
Q Consensus 139 ~lypGV~e~L~---~~gi~laVvTnK~ 162 (193)
.+||||.++|+ ++|++++|+||++
T Consensus 84 ~~~~g~~e~L~~l~~~g~~~~i~Sn~~ 110 (199)
T PRK09456 84 ALRPEVIAIMHKLREQGHRVVVLSNTN 110 (199)
T ss_pred ccCHHHHHHHHHHHhCCCcEEEEcCCc
Confidence 58999999999 7899999999998
No 50
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=98.64 E-value=2.2e-07 Score=73.44 Aligned_cols=34 Identities=6% Similarity=0.080 Sum_probs=30.8
Q ss_pred CCCCCCHHHHHH---hCCCcEEEEcCcH--HHHHHHHHH
Q 029420 138 NRFYPGIPDALK---FASSRIYIVTTKA--VSQMLYYES 171 (193)
Q Consensus 138 ~~lypGV~e~L~---~~gi~laVvTnK~--~a~~lL~~~ 171 (193)
.+++||+.++|+ ++|++++|+||++ .++.+++++
T Consensus 71 ~~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l~~~ 109 (188)
T TIGR01489 71 APIDPGFKEFIAFIKEHGIDFIVISDGNDFFIDPVLEGI 109 (188)
T ss_pred CCCCccHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHc
Confidence 589999999999 8899999999998 888888876
No 51
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=98.60 E-value=1.7e-07 Score=73.71 Aligned_cols=32 Identities=16% Similarity=0.256 Sum_probs=26.5
Q ss_pred CCCCCCHHHHHH---hCCCcEEEEcCcH-HHHHHHH
Q 029420 138 NRFYPGIPDALK---FASSRIYIVTTKA-VSQMLYY 169 (193)
Q Consensus 138 ~~lypGV~e~L~---~~gi~laVvTnK~-~a~~lL~ 169 (193)
.++|||+.++|+ ++|++++|+||.+ ....++.
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~~~~~~ 119 (183)
T TIGR01509 84 LKPLPGVEPLLEALRARGKKLALLTNSPRDHAVLVQ 119 (183)
T ss_pred CccCcCHHHHHHHHHHCCCeEEEEeCCchHHHHHHH
Confidence 589999999999 7899999999999 3344444
No 52
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=98.59 E-value=2.4e-07 Score=76.34 Aligned_cols=37 Identities=14% Similarity=0.013 Sum_probs=31.4
Q ss_pred CCCCCCHHHHHH--hCCCcEEEEcCcH--HHHHHHHHHhHH
Q 029420 138 NRFYPGIPDALK--FASSRIYIVTTKA--VSQMLYYESLQE 174 (193)
Q Consensus 138 ~~lypGV~e~L~--~~gi~laVvTnK~--~a~~lL~~~~~~ 174 (193)
.++|||+.++|+ .++.+++|+||+. ++++++++++.+
T Consensus 67 i~l~pga~ell~~lk~~~~~~IVS~~~~~~~~~il~~lgi~ 107 (203)
T TIGR02137 67 LKPLEGAVEFVDWLRERFQVVILSDTFYEFSQPLMRQLGFP 107 (203)
T ss_pred CCCCccHHHHHHHHHhCCeEEEEeCChHHHHHHHHHHcCCc
Confidence 579999999999 3345999999999 999999998543
No 53
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=98.58 E-value=7.7e-07 Score=71.67 Aligned_cols=55 Identities=11% Similarity=0.136 Sum_probs=42.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCHHHHHH---hCCCcEEEEcCcH--HHHHHHHHHh
Q 029420 109 SENRDALVDLFGKVRDEWMDKDLTTWIGANRFYPGIPDALK---FASSRIYIVTTKA--VSQMLYYESL 172 (193)
Q Consensus 109 g~~~e~~~~~~~~~r~~y~~~y~~~~~~~~~lypGV~e~L~---~~gi~laVvTnK~--~a~~lL~~~~ 172 (193)
|++.+++.+....+.+.+. ...+|||+.++|+ ++|++++|+||++ .++.+++++.
T Consensus 66 g~~~~~l~~~~~~~~~~~~---------~~~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~lg 125 (202)
T TIGR01490 66 GLLEEDVRAIVEEFVNQKI---------ESILYPEARDLIRWHKAEGHTIVLVSASLTILVKPLARILG 125 (202)
T ss_pred CCCHHHHHHHHHHHHHHHH---------HHhccHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcC
Confidence 7788777666655544332 2479999999998 8899999999999 8888888763
No 54
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=98.46 E-value=3.2e-06 Score=70.81 Aligned_cols=105 Identities=11% Similarity=0.061 Sum_probs=70.7
Q ss_pred ceEEEecCcccccChHHHHHHHHHHHHHhcCCCCCCCCcchhhhhhhhhhhccchhhccHHHHHHHHHHhhhcccccccc
Q 029420 3 DLYALDFDGVLCDSCGESSLSAVKAAKVRWPGLFDGVDSVIEDWIVDQMHILRPVVETGYENLLLVRLLLEIRMPSIRKS 82 (193)
Q Consensus 3 ~~vlFDlDGTLvDS~~di~~a~~~al~~l~~~~~~gl~~~~~~~~~~~~~~vr~~Ig~G~~~ll~~~~l~~~~~~~~~~~ 82 (193)
.+++||+||||+||-.-+..+.+..+.++| .+.. .+......|.+...+. +.+....
T Consensus 11 ~~~lfD~dG~lvdte~~y~~~~~~~~~~yg------k~~~--------~~~~~~~mG~~~~eaa--~~~~~~~------- 67 (222)
T KOG2914|consen 11 SACLFDMDGTLVDTEDLYTEAWQELLDRYG------KPYP--------WDVKVKSMGKRTSEAA--RLFVKKL------- 67 (222)
T ss_pred eeEEEecCCcEEecHHHHHHHHHHHHHHcC------CCCh--------HHHHHHHcCCCHHHHH--HHHHhhc-------
Confidence 478999999999999999999999999994 4321 3445568887777665 3332100
Q ss_pred cccccccHHHHhhhhcchhhhhhhhcCCCHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCHHHHHH---hCCCcEEEEc
Q 029420 83 SVSEGLTVEGILENWSKIKPVIMEDWSENRDALVDLFGKVRDEWMDKDLTTWIGANRFYPGIPDALK---FASSRIYIVT 159 (193)
Q Consensus 83 ~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~e~~~~~~~~~r~~y~~~y~~~~~~~~~lypGV~e~L~---~~gi~laVvT 159 (193)
.. .++.+++......-... ......+.||+..++. ..|++++++|
T Consensus 68 ----~d--------------------p~s~ee~~~e~~~~~~~--------~~~~~~~~PGa~kLv~~L~~~gip~alat 115 (222)
T KOG2914|consen 68 ----PD--------------------PVSREEFNKEEEEILDR--------LFMNSILMPGAEKLVNHLKNNGIPVALAT 115 (222)
T ss_pred ----CC--------------------CCCHHHHHHHHHHHHHH--------hccccccCCcHHHHHHHHHhCCCCeeEEe
Confidence 00 12333222222222221 1346789999999999 9999999999
Q ss_pred CcH
Q 029420 160 TKA 162 (193)
Q Consensus 160 nK~ 162 (193)
|-+
T Consensus 116 ~s~ 118 (222)
T KOG2914|consen 116 SST 118 (222)
T ss_pred cCC
Confidence 986
No 55
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=98.43 E-value=1.8e-06 Score=71.62 Aligned_cols=37 Identities=14% Similarity=0.188 Sum_probs=33.1
Q ss_pred CCCCCCHHHHHH---hCCCcEEEEcCcH--HHHHHHHHHhHH
Q 029420 138 NRFYPGIPDALK---FASSRIYIVTTKA--VSQMLYYESLQE 174 (193)
Q Consensus 138 ~~lypGV~e~L~---~~gi~laVvTnK~--~a~~lL~~~~~~ 174 (193)
.+++||..++++ ++|.+++|+|.-+ +++++.+.++-+
T Consensus 76 ~~l~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~lg~d 117 (212)
T COG0560 76 LRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPIAERLGID 117 (212)
T ss_pred CcCCccHHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHhCCc
Confidence 689999999999 9999999999999 899998887543
No 56
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=98.41 E-value=6.2e-07 Score=73.69 Aligned_cols=34 Identities=9% Similarity=0.077 Sum_probs=31.5
Q ss_pred CCCCCCHHHHHH---hCCCcEEEEcCcH--HHHHHHHHH
Q 029420 138 NRFYPGIPDALK---FASSRIYIVTTKA--VSQMLYYES 171 (193)
Q Consensus 138 ~~lypGV~e~L~---~~gi~laVvTnK~--~a~~lL~~~ 171 (193)
..++||+.++|+ ++|++++|+||+. +++++++++
T Consensus 69 ~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~ 107 (214)
T TIGR03333 69 AEIREGFREFVAFINEHGIPFYVISGGMDFFVYPLLEGI 107 (214)
T ss_pred CcccccHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHhh
Confidence 689999999999 8899999999999 888899887
No 57
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=98.34 E-value=4.2e-07 Score=76.80 Aligned_cols=41 Identities=17% Similarity=0.146 Sum_probs=33.6
Q ss_pred hccccCCCCCCCHHHHHH---hCCCcEEEEcCc----H--HHHHHHHHHh
Q 029420 132 TTWIGANRFYPGIPDALK---FASSRIYIVTTK----A--VSQMLYYESL 172 (193)
Q Consensus 132 ~~~~~~~~lypGV~e~L~---~~gi~laVvTnK----~--~a~~lL~~~~ 172 (193)
+++...+.||||+.++|+ ++|+++++|||+ . .++.++++++
T Consensus 107 ~~~~~~a~p~~Ga~elL~~L~~~G~~I~iVTnR~~~k~~~t~~~Llk~~g 156 (237)
T PRK11009 107 NGWDEFSIPKEVARQLIDMHVKRGDSIYFITGRTATKTETVSKTLADDFH 156 (237)
T ss_pred hcccccCcchHHHHHHHHHHHHCCCeEEEEeCCCCcccHHHHHHHHHHcC
Confidence 345567899999999999 999999999994 3 7777777663
No 58
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=98.32 E-value=1.4e-06 Score=68.50 Aligned_cols=35 Identities=11% Similarity=0.010 Sum_probs=31.5
Q ss_pred CCCCCCHHHHHH---hCCCcEEEEcCcH--HHHHHHHHHh
Q 029420 138 NRFYPGIPDALK---FASSRIYIVTTKA--VSQMLYYESL 172 (193)
Q Consensus 138 ~~lypGV~e~L~---~~gi~laVvTnK~--~a~~lL~~~~ 172 (193)
..++||+.++|+ ++|++++|+|+.. +++.++++++
T Consensus 72 ~~~~~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~g 111 (177)
T TIGR01488 72 VALRPGARELISWLKERGIDTVIVSGGFDFFVEPVAEKLG 111 (177)
T ss_pred CCcCcCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcC
Confidence 468999999999 8999999999998 8999998873
No 59
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=98.27 E-value=2.9e-06 Score=74.65 Aligned_cols=35 Identities=11% Similarity=0.123 Sum_probs=30.9
Q ss_pred CCCCCCHHHHHH---hCCCcEEEEcCcH--HHHHHHHHHh
Q 029420 138 NRFYPGIPDALK---FASSRIYIVTTKA--VSQMLYYESL 172 (193)
Q Consensus 138 ~~lypGV~e~L~---~~gi~laVvTnK~--~a~~lL~~~~ 172 (193)
.+++||+.++|+ ++|++++|+||.. +++.+++++.
T Consensus 180 l~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~~l~~~Lg 219 (322)
T PRK11133 180 LPLMPGLTELVLKLQALGWKVAIASGGFTYFADYLRDKLR 219 (322)
T ss_pred CCCChhHHHHHHHHHHcCCEEEEEECCcchhHHHHHHHcC
Confidence 579999999999 8999999999999 8888877653
No 60
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=98.19 E-value=1.9e-05 Score=64.41 Aligned_cols=40 Identities=18% Similarity=0.037 Sum_probs=30.2
Q ss_pred CCCCCCCHHHHHH--hCCCcEEEEcC-cH-HHHHHHHHHh-HHHH
Q 029420 137 ANRFYPGIPDALK--FASSRIYIVTT-KA-VSQMLYYESL-QELQ 176 (193)
Q Consensus 137 ~~~lypGV~e~L~--~~gi~laVvTn-K~-~a~~lL~~~~-~~~~ 176 (193)
..++||++.+.|+ ...++++|+|| -. .+...|+.++ .+++
T Consensus 97 ~~~~~~~~~~~L~~l~~~~~l~ilTNg~~~~~~~~l~~~gl~~~F 141 (229)
T COG1011 97 LLPDYPEALEALKELGKKYKLGILTNGARPHQERKLRQLGLLDYF 141 (229)
T ss_pred hCccChhHHHHHHHHHhhccEEEEeCCChHHHHHHHHHcCChhhh
Confidence 3689999999999 22288999999 44 7778888773 4443
No 61
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=98.08 E-value=3.4e-06 Score=68.18 Aligned_cols=36 Identities=8% Similarity=-0.045 Sum_probs=31.9
Q ss_pred CCCCCCCHHHHHH---hCCCcEEEEcCc-H--HHHHHHHHHh
Q 029420 137 ANRFYPGIPDALK---FASSRIYIVTTK-A--VSQMLYYESL 172 (193)
Q Consensus 137 ~~~lypGV~e~L~---~~gi~laVvTnK-~--~a~~lL~~~~ 172 (193)
...+||||.++|+ ++|++++|+||+ + .++.+|+.+.
T Consensus 43 ~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~~~~~L~~~~ 84 (174)
T TIGR01685 43 EVTLIKEVRDVLQTLKDAGTYLATASWNDVPEWAYEILGTFE 84 (174)
T ss_pred EEEEcccHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHhCC
Confidence 4689999999999 899999999998 6 8888888874
No 62
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=98.00 E-value=7.6e-06 Score=61.84 Aligned_cols=25 Identities=40% Similarity=0.675 Sum_probs=22.5
Q ss_pred CCCCCCHHHHHH---hCCCcEEEEcCcH
Q 029420 138 NRFYPGIPDALK---FASSRIYIVTTKA 162 (193)
Q Consensus 138 ~~lypGV~e~L~---~~gi~laVvTnK~ 162 (193)
.++||||.++|+ ++|++++|+||++
T Consensus 24 ~~~~~~v~~~l~~L~~~g~~l~i~Sn~~ 51 (132)
T TIGR01662 24 RILYPEVPDALAELKEAGYKVVIVTNQS 51 (132)
T ss_pred heeCCCHHHHHHHHHHCCCEEEEEECCc
Confidence 468999999998 8999999999986
No 63
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=97.87 E-value=7.8e-05 Score=62.97 Aligned_cols=36 Identities=11% Similarity=0.181 Sum_probs=31.4
Q ss_pred CCCCCCCHHHHHH-----hCCCcEEEEcCcH--HHHHHHHHHh
Q 029420 137 ANRFYPGIPDALK-----FASSRIYIVTTKA--VSQMLYYESL 172 (193)
Q Consensus 137 ~~~lypGV~e~L~-----~~gi~laVvTnK~--~a~~lL~~~~ 172 (193)
..++-||+.++++ ..|+.+.|+|.-. +.+.+|++.+
T Consensus 69 ~ip~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~fI~~iL~~~g 111 (234)
T PF06888_consen 69 SIPIDPGMKELLRFLAKNQRGFDLIIISDANSFFIETILEHHG 111 (234)
T ss_pred cCCCCccHHHHHHHHHhcCCCceEEEEeCCcHhHHHHHHHhCC
Confidence 3578899999999 3699999999988 9999999884
No 64
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=97.84 E-value=0.00012 Score=61.06 Aligned_cols=41 Identities=20% Similarity=0.343 Sum_probs=32.4
Q ss_pred hhhccccCCCCCCCHHHHHH---hCCCcEEEEcCcH--HHHHHHHHH
Q 029420 130 DLTTWIGANRFYPGIPDALK---FASSRIYIVTTKA--VSQMLYYES 171 (193)
Q Consensus 130 y~~~~~~~~~lypGV~e~L~---~~gi~laVvTnK~--~a~~lL~~~ 171 (193)
|..+ ...+.+||||.++|+ ++|++++|+||++ ..+.+++++
T Consensus 87 Y~~~-~~~~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~~~~ 132 (220)
T TIGR01691 87 YESG-ELTSHLYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLFGHS 132 (220)
T ss_pred HhcC-CcccCcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhhc
Confidence 4443 445789999999999 8999999999999 556666654
No 65
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=97.72 E-value=4.6e-05 Score=61.04 Aligned_cols=36 Identities=19% Similarity=0.249 Sum_probs=30.8
Q ss_pred CCCCCCCHHHHHH---hCCCcEEEEcCcH--HHHHHHHHHh
Q 029420 137 ANRFYPGIPDALK---FASSRIYIVTTKA--VSQMLYYESL 172 (193)
Q Consensus 137 ~~~lypGV~e~L~---~~gi~laVvTnK~--~a~~lL~~~~ 172 (193)
...++||+.++|+ ++|++++|+|+-. .+..+.+.++
T Consensus 125 ~d~~~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~lg 165 (215)
T PF00702_consen 125 RDPLRPGAKEALQELKEAGIKVAILTGDNESTASAIAKQLG 165 (215)
T ss_dssp EEEBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTT
T ss_pred cCcchhhhhhhhhhhhccCcceeeeeccccccccccccccc
Confidence 3478999999999 8999999999876 8888887764
No 66
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=97.62 E-value=3.5e-05 Score=61.57 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=22.9
Q ss_pred CCCCCCHHHHHH---hCCCcEEEEcCcH
Q 029420 138 NRFYPGIPDALK---FASSRIYIVTTKA 162 (193)
Q Consensus 138 ~~lypGV~e~L~---~~gi~laVvTnK~ 162 (193)
..+|||+.++|+ ++|++++|+||++
T Consensus 28 ~~~~pgv~e~L~~Lk~~g~~l~I~Tn~~ 55 (181)
T PRK08942 28 WIPIPGSIEAIARLKQAGYRVVVATNQS 55 (181)
T ss_pred eEECCCHHHHHHHHHHCCCEEEEEeCCc
Confidence 368999999999 8899999999996
No 67
>PRK08238 hypothetical protein; Validated
Probab=97.56 E-value=0.00029 Score=65.18 Aligned_cols=34 Identities=15% Similarity=0.180 Sum_probs=31.0
Q ss_pred CCCCCHHHHHH---hCCCcEEEEcCcH--HHHHHHHHHh
Q 029420 139 RFYPGIPDALK---FASSRIYIVTTKA--VSQMLYYESL 172 (193)
Q Consensus 139 ~lypGV~e~L~---~~gi~laVvTnK~--~a~~lL~~~~ 172 (193)
+++||+.+.|+ ++|++++|+||++ .+++++++++
T Consensus 72 p~~pga~e~L~~lk~~G~~v~LaTas~~~~a~~i~~~lG 110 (479)
T PRK08238 72 PYNEEVLDYLRAERAAGRKLVLATASDERLAQAVAAHLG 110 (479)
T ss_pred CCChhHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcC
Confidence 46799999999 8999999999999 8999999874
No 68
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=97.50 E-value=0.00045 Score=54.58 Aligned_cols=34 Identities=12% Similarity=0.281 Sum_probs=27.6
Q ss_pred CCCCCHH----HHHH---hCCCcEEEEcCcH--HHHHHHHHHh
Q 029420 139 RFYPGIP----DALK---FASSRIYIVTTKA--VSQMLYYESL 172 (193)
Q Consensus 139 ~lypGV~----e~L~---~~gi~laVvTnK~--~a~~lL~~~~ 172 (193)
.+|||+. ++|+ ++|+++.|+|+.+ .++.+++.++
T Consensus 85 ~~~~~~~~~~~e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~~ 127 (192)
T PF12710_consen 85 KLFPGFIPDAMELIRELKDNGIKVVIVSGSPDEIIEPIAERLG 127 (192)
T ss_dssp HHCTTCHTTHHHHHHHHHHTTSEEEEEEEEEHHHHHHHHHHTT
T ss_pred ccCcCchhhHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcC
Confidence 4555555 9998 8999999999999 8888887663
No 69
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=97.44 E-value=0.00048 Score=59.23 Aligned_cols=35 Identities=14% Similarity=0.153 Sum_probs=28.4
Q ss_pred CCCCCCCHHHHHH---hCCCcEEEEcCcH-----HHHHHHHHH
Q 029420 137 ANRFYPGIPDALK---FASSRIYIVTTKA-----VSQMLYYES 171 (193)
Q Consensus 137 ~~~lypGV~e~L~---~~gi~laVvTnK~-----~a~~lL~~~ 171 (193)
...++||+.++|+ ++|++++|+||++ .+...|+.+
T Consensus 116 ~a~~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T~~~Lkk~ 158 (266)
T TIGR01533 116 QAKPVAGALDFLNYANSKGVKIFYVSNRSEKEKAATLKNLKRF 158 (266)
T ss_pred CCCcCccHHHHHHHHHHCCCeEEEEeCCCcchHHHHHHHHHHc
Confidence 5689999999999 9999999999987 333555554
No 70
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=97.39 E-value=0.00017 Score=67.42 Aligned_cols=23 Identities=35% Similarity=0.642 Sum_probs=22.1
Q ss_pred CCCCHHHHHH---hCCCcEEEEcCcH
Q 029420 140 FYPGIPDALK---FASSRIYIVTTKA 162 (193)
Q Consensus 140 lypGV~e~L~---~~gi~laVvTnK~ 162 (193)
+||||.+.|+ ++|++++|+|||+
T Consensus 198 l~pgV~e~L~~L~~~Gy~IvIvTNQ~ 223 (526)
T TIGR01663 198 IFPEIPEKLKELEADGFKICIFTNQG 223 (526)
T ss_pred cccCHHHHHHHHHHCCCEEEEEECCc
Confidence 7999999999 9999999999998
No 71
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=97.33 E-value=0.0029 Score=53.18 Aligned_cols=109 Identities=16% Similarity=0.246 Sum_probs=70.4
Q ss_pred CceEEEecCcccccChHHHHHHHHHHHHHhcCCCCCCCCcchhhhhhhhhhhccchhhcc-HHHHHHHHHHhhhcccccc
Q 029420 2 ADLYALDFDGVLCDSCGESSLSAVKAAKVRWPGLFDGVDSVIEDWIVDQMHILRPVVETG-YENLLLVRLLLEIRMPSIR 80 (193)
Q Consensus 2 ~~~vlFDlDGTLvDS~~di~~a~~~al~~l~~~~~~gl~~~~~~~~~~~~~~vr~~Ig~G-~~~ll~~~~l~~~~~~~~~ 80 (193)
+-+++||||-|+||-=.|.+-. +.+ +... .+.++|+-+.+| |..++ .|.+.+-+
T Consensus 13 ril~~FDFD~TIid~dSD~wVv-----~~l------p~~~--------l~~qL~~t~p~~~Wne~M-~rv~k~Lh----- 67 (256)
T KOG3120|consen 13 RILLVFDFDRTIIDQDSDNWVV-----DEL------PTTD--------LFNQLRDTYPKGFWNELM-DRVFKELH----- 67 (256)
T ss_pred cEEEEEecCceeecCCcchHHH-----Hhc------ccch--------hHHHHHHhcccchHHHHH-HHHHHHHH-----
Confidence 3579999999999987765532 333 2222 247788888755 55555 56664311
Q ss_pred cccccccccHHHHhhhhcchhhhhhhhcCCCHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCHHHHHH---hCCC-cEE
Q 029420 81 KSSVSEGLTVEGILENWSKIKPVIMEDWSENRDALVDLFGKVRDEWMDKDLTTWIGANRFYPGIPDALK---FASS-RIY 156 (193)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~e~~~~~~~~~r~~y~~~y~~~~~~~~~lypGV~e~L~---~~gi-~la 156 (193)
+-|.+.+++ ++.++ ....-||+.++++ +.|. .+.
T Consensus 68 --------------------------eqgv~~~~i-------k~~~r---------~iP~~Pgmv~lik~~ak~g~~eli 105 (256)
T KOG3120|consen 68 --------------------------EQGVRIAEI-------KQVLR---------SIPIVPGMVRLIKSAAKLGCFELI 105 (256)
T ss_pred --------------------------HcCCCHHHH-------HHHHh---------cCCCCccHHHHHHHHHhCCCceEE
Confidence 113444322 22222 2356799999999 5664 888
Q ss_pred EEcCcH--HHHHHHHHH-hHHHHH
Q 029420 157 IVTTKA--VSQMLYYES-LQELQY 177 (193)
Q Consensus 157 VvTnK~--~a~~lL~~~-~~~~~~ 177 (193)
|+|--. |.+.+|++. .-+|+-
T Consensus 106 IVSDaNsfFIe~~Lea~~~~d~F~ 129 (256)
T KOG3120|consen 106 IVSDANSFFIEEILEAAGIHDLFS 129 (256)
T ss_pred EEecCchhHHHHHHHHccHHHHHH
Confidence 998877 999999999 556654
No 72
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=97.19 E-value=0.0017 Score=52.40 Aligned_cols=28 Identities=29% Similarity=0.339 Sum_probs=19.7
Q ss_pred ccCCCCCCCHHHHHH---hCCCcEEEEcCcH
Q 029420 135 IGANRFYPGIPDALK---FASSRIYIVTTKA 162 (193)
Q Consensus 135 ~~~~~lypGV~e~L~---~~gi~laVvTnK~ 162 (193)
....+|+||+.|+|+ +.|..+.++|+.+
T Consensus 69 f~~l~p~~gA~e~l~~L~~~g~~~~~Itar~ 99 (191)
T PF06941_consen 69 FSNLPPIPGAVEALKKLRDKGHEIVIITARP 99 (191)
T ss_dssp TTT--B-TTHHHHHHHHHTSTTEEEEEEE-S
T ss_pred hcCCCccHHHHHHHHHHHHcCCcEEEEEecC
Confidence 445689999999999 7887788888776
No 73
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=96.89 E-value=0.00056 Score=56.00 Aligned_cols=30 Identities=33% Similarity=0.407 Sum_probs=24.0
Q ss_pred CceEEEecCcccccChHHHHHHHHHHHHHh
Q 029420 2 ADLYALDFDGVLCDSCGESSLSAVKAAKVR 31 (193)
Q Consensus 2 ~~~vlFDlDGTLvDS~~di~~a~~~al~~l 31 (193)
.|+|+|||||||+|+-..+......+++++
T Consensus 3 ~kli~~DlDGTLl~~~~~i~~~~~~al~~l 32 (230)
T PRK01158 3 IKAIAIDIDGTITDKDRRLSLKAVEAIRKA 32 (230)
T ss_pred eeEEEEecCCCcCCCCCccCHHHHHHHHHH
Confidence 699999999999998766666666666665
No 74
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=96.83 E-value=0.00067 Score=57.37 Aligned_cols=31 Identities=26% Similarity=0.204 Sum_probs=24.5
Q ss_pred CCceEEEecCcccccChHHHHHHHHHHHHHh
Q 029420 1 MADLYALDFDGVLCDSCGESSLSAVKAAKVR 31 (193)
Q Consensus 1 ~~~~vlFDlDGTLvDS~~di~~a~~~al~~l 31 (193)
|.|+|+||+||||+++-..+......+++++
T Consensus 1 m~kli~~DlDGTLl~~~~~i~~~~~~ai~~l 31 (272)
T PRK15126 1 MARLAAFDMDGTLLMPDHHLGEKTLSTLARL 31 (272)
T ss_pred CccEEEEeCCCcCcCCCCcCCHHHHHHHHHH
Confidence 8899999999999997665666665666665
No 75
>PRK10976 putative hydrolase; Provisional
Probab=96.80 E-value=0.00072 Score=56.82 Aligned_cols=31 Identities=29% Similarity=0.224 Sum_probs=24.7
Q ss_pred CCceEEEecCcccccChHHHHHHHHHHHHHh
Q 029420 1 MADLYALDFDGVLCDSCGESSLSAVKAAKVR 31 (193)
Q Consensus 1 ~~~~vlFDlDGTLvDS~~di~~a~~~al~~l 31 (193)
|.|+|+||+||||+|+-..+......+++++
T Consensus 1 mikli~~DlDGTLl~~~~~is~~~~~ai~~l 31 (266)
T PRK10976 1 MYQVVASDLDGTLLSPDHTLSPYAKETLKLL 31 (266)
T ss_pred CceEEEEeCCCCCcCCCCcCCHHHHHHHHHH
Confidence 7899999999999998666666666666665
No 76
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=96.65 E-value=0.0014 Score=51.99 Aligned_cols=25 Identities=32% Similarity=0.352 Sum_probs=23.1
Q ss_pred CCCCCCCHHHHHH---hCCCcEEEEcCc
Q 029420 137 ANRFYPGIPDALK---FASSRIYIVTTK 161 (193)
Q Consensus 137 ~~~lypGV~e~L~---~~gi~laVvTnK 161 (193)
..++||||.++|+ ++|++++|+|||
T Consensus 27 ~~~~~pgv~e~L~~L~~~g~~l~IvSN~ 54 (161)
T TIGR01261 27 KLRFEKGVIPALLKLKKAGYKFVMVTNQ 54 (161)
T ss_pred HeeECCCHHHHHHHHHHCCCeEEEEeCC
Confidence 4589999999999 889999999997
No 77
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=96.63 E-value=0.0011 Score=55.45 Aligned_cols=31 Identities=23% Similarity=0.191 Sum_probs=23.8
Q ss_pred CCceEEEecCcccccChHHHHHHHHHHHHHh
Q 029420 1 MADLYALDFDGVLCDSCGESSLSAVKAAKVR 31 (193)
Q Consensus 1 ~~~~vlFDlDGTLvDS~~di~~a~~~al~~l 31 (193)
+.|+|+||+||||+|+-..+......+++++
T Consensus 2 ~~kli~~DlDGTLl~~~~~i~~~~~~ai~~~ 32 (272)
T PRK10530 2 TYRVIALDLDGTLLTPKKTILPESLEALARA 32 (272)
T ss_pred CccEEEEeCCCceECCCCccCHHHHHHHHHH
Confidence 1699999999999998766666555666655
No 78
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=96.59 E-value=0.014 Score=49.42 Aligned_cols=138 Identities=13% Similarity=0.156 Sum_probs=74.3
Q ss_pred ceEEEecCcccccChHHHHHHHHHHHHHhcCCCCCCCCcchhhhhhhhhhhccchhhccHHHHHHHHHHhhhcccccccc
Q 029420 3 DLYALDFDGVLCDSCGESSLSAVKAAKVRWPGLFDGVDSVIEDWIVDQMHILRPVVETGYENLLLVRLLLEIRMPSIRKS 82 (193)
Q Consensus 3 ~~vlFDlDGTLvDS~~di~~a~~~al~~l~~~~~~gl~~~~~~~~~~~~~~vr~~Ig~G~~~ll~~~~l~~~~~~~~~~~ 82 (193)
++|.||++|||..+.+......-.+.+.+ |++-.+ +++..........+.. .+|.-
T Consensus 8 ravtfD~~~tLl~~~~~~~~~y~~i~~~~------gl~~~~--------~~~~~~~~~~~~~~~~-------~~p~~--- 63 (237)
T KOG3085|consen 8 RAVTFDAGGTLLATLPPVMEVYCEIAEAY------GLEYDD--------SLIETIFRKDFKKMSE-------KGPFF--- 63 (237)
T ss_pred EEEEEeCCCceeecCCccHHHHHHHHHHh------CCCCCH--------HHHhHhhhHHHHhhcc-------cCCcc---
Confidence 79999999999999999998888899999 676321 3333333333222110 00000
Q ss_pred ccccc-ccHHHHhhhhcchhhhhhhhcCCCHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCHHHHHH---hCCCcEEEE
Q 029420 83 SVSEG-LTVEGILENWSKIKPVIMEDWSENRDALVDLFGKVRDEWMDKDLTTWIGANRFYPGIPDALK---FASSRIYIV 158 (193)
Q Consensus 83 ~~~~~-~~~~~~~~~~~~l~~~~~~~~g~~~e~~~~~~~~~r~~y~~~y~~~~~~~~~lypGV~e~L~---~~gi~laVv 158 (193)
....+ .+... =|+.+.......- ..+..++..+.+...+.+.+. ....++.+|+.++|+ .+|..++|+
T Consensus 64 ~~~~g~l~~~~---ww~~lv~~~f~~~--~~~~~~~~~~~~~~~~~s~~~---~~~~~~~~~~~~~lq~lR~~g~~l~ii 135 (237)
T KOG3085|consen 64 GLYSGELTLSQ---WWPKLVESTFGKA--GIDYEEELLENFSFRLFSTFA---PSAWKYLDGMQELLQKLRKKGTILGII 135 (237)
T ss_pred cccCCcccHHH---HHHHHHHHHhccc--cchhHHHHHhhhhhheecccc---ccCceeccHHHHHHHHHHhCCeEEEEe
Confidence 00001 11110 0111221111111 122223333333333322221 223567899999999 899999999
Q ss_pred cCcH-HHHHHHHHHh
Q 029420 159 TTKA-VSQMLYYESL 172 (193)
Q Consensus 159 TnK~-~a~~lL~~~~ 172 (193)
||=. -.+.++..+.
T Consensus 136 sN~d~r~~~~l~~~~ 150 (237)
T KOG3085|consen 136 SNFDDRLRLLLLPLG 150 (237)
T ss_pred cCCcHHHHHHhhccC
Confidence 9998 7777777763
No 79
>PTZ00174 phosphomannomutase; Provisional
Probab=96.52 E-value=0.0014 Score=55.01 Aligned_cols=29 Identities=14% Similarity=0.155 Sum_probs=25.1
Q ss_pred ceEEEecCcccccChHHHHHHHHHHHHHh
Q 029420 3 DLYALDFDGVLCDSCGESSLSAVKAAKVR 31 (193)
Q Consensus 3 ~~vlFDlDGTLvDS~~di~~a~~~al~~l 31 (193)
|+|+|||||||+|+-..+......+++++
T Consensus 6 klia~DlDGTLL~~~~~is~~~~~ai~~l 34 (247)
T PTZ00174 6 TILLFDVDGTLTKPRNPITQEMKDTLAKL 34 (247)
T ss_pred eEEEEECcCCCcCCCCCCCHHHHHHHHHH
Confidence 89999999999999887877777777776
No 80
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=96.49 E-value=0.0015 Score=54.90 Aligned_cols=30 Identities=27% Similarity=0.222 Sum_probs=23.8
Q ss_pred CceEEEecCcccccChHHHHHHHHHHHHHh
Q 029420 2 ADLYALDFDGVLCDSCGESSLSAVKAAKVR 31 (193)
Q Consensus 2 ~~~vlFDlDGTLvDS~~di~~a~~~al~~l 31 (193)
.|+|+|||||||+++-..+......+++++
T Consensus 3 ~kli~~DlDGTLl~~~~~i~~~~~~ai~~l 32 (270)
T PRK10513 3 IKLIAIDMDGTLLLPDHTISPAVKQAIAAA 32 (270)
T ss_pred eEEEEEecCCcCcCCCCccCHHHHHHHHHH
Confidence 699999999999998666666666666665
No 81
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=96.49 E-value=0.0019 Score=51.09 Aligned_cols=39 Identities=13% Similarity=0.013 Sum_probs=35.2
Q ss_pred cCCCCCCCHHHHHH--hCCCcEEEEcCcH--HHHHHHHHHhHH
Q 029420 136 GANRFYPGIPDALK--FASSRIYIVTTKA--VSQMLYYESLQE 174 (193)
Q Consensus 136 ~~~~lypGV~e~L~--~~gi~laVvTnK~--~a~~lL~~~~~~ 174 (193)
..+++|||+.++|+ ..+++++|+|||+ .|.++++.+.+.
T Consensus 55 ~~v~~rPgv~efL~~l~~~yel~I~T~~~~~yA~~vl~~ldp~ 97 (156)
T TIGR02250 55 YLTKLRPFLHEFLKEASKLYEMHVYTMGTRAYAQAIAKLIDPD 97 (156)
T ss_pred EEEEECCCHHHHHHHHHhhcEEEEEeCCcHHHHHHHHHHhCcC
Confidence 35789999999999 7779999999999 999999999766
No 82
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=96.44 E-value=0.0029 Score=50.40 Aligned_cols=24 Identities=33% Similarity=0.544 Sum_probs=22.7
Q ss_pred CCCCCHHHHHH---hCCCcEEEEcCcH
Q 029420 139 RFYPGIPDALK---FASSRIYIVTTKA 162 (193)
Q Consensus 139 ~lypGV~e~L~---~~gi~laVvTnK~ 162 (193)
.+||||.++|+ ++|++++|+|||+
T Consensus 42 ~~~pgv~e~L~~Lk~~G~~l~I~TN~~ 68 (166)
T TIGR01664 42 FLYPEIPAKLQELDDEGYKIVIFTNQS 68 (166)
T ss_pred EecCCHHHHHHHHHHCCCEEEEEeCCc
Confidence 48999999999 8999999999998
No 83
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=96.43 E-value=0.0042 Score=49.39 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=23.4
Q ss_pred CCCCCCHHHHHH---hCCCcEEEEcCcH
Q 029420 138 NRFYPGIPDALK---FASSRIYIVTTKA 162 (193)
Q Consensus 138 ~~lypGV~e~L~---~~gi~laVvTnK~ 162 (193)
.++||||.++|+ ++|++++|+|||+
T Consensus 25 ~~~~pgv~e~L~~Lk~~G~~l~i~TN~~ 52 (176)
T TIGR00213 25 FEFIDGVIDALRELKKMGYALVLVTNQS 52 (176)
T ss_pred eEECCCHHHHHHHHHHCCCEEEEEeCCc
Confidence 469999999999 8999999999998
No 84
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=96.41 E-value=0.002 Score=54.77 Aligned_cols=31 Identities=35% Similarity=0.210 Sum_probs=22.2
Q ss_pred CCceEEEecCcccccChHHHHHHHHHHHHHh
Q 029420 1 MADLYALDFDGVLCDSCGESSLSAVKAAKVR 31 (193)
Q Consensus 1 ~~~~vlFDlDGTLvDS~~di~~a~~~al~~l 31 (193)
|.|+|++|+||||+|+-..+...+..+++.+
T Consensus 3 ~~kli~~DlDGTLl~~~~~~~~~~~~ai~~l 33 (273)
T PRK00192 3 MKLLVFTDLDGTLLDHHTYSYEPAKPALKAL 33 (273)
T ss_pred cceEEEEcCcccCcCCCCcCcHHHHHHHHHH
Confidence 7899999999999985444444444455554
No 85
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=96.34 E-value=0.0056 Score=54.52 Aligned_cols=39 Identities=10% Similarity=-0.032 Sum_probs=34.5
Q ss_pred ccccCCCCCCCHHHHHH---hCCCcEEEEcCcH--HHHHHHHHH
Q 029420 133 TWIGANRFYPGIPDALK---FASSRIYIVTTKA--VSQMLYYES 171 (193)
Q Consensus 133 ~~~~~~~lypGV~e~L~---~~gi~laVvTnK~--~a~~lL~~~ 171 (193)
+......++||+.++|+ ++|++++|+|||+ +++.+++++
T Consensus 178 dp~~yv~~~pgl~elL~~Lr~~G~klfLvTNS~~~yt~~im~~l 221 (343)
T TIGR02244 178 NPEKYVLRDPKLPLFLSKLKEHGKKLFLLTNSDYDYTDKGMKYL 221 (343)
T ss_pred CHHHHhccchhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHh
Confidence 34445678999999999 8999999999999 999999997
No 86
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=96.32 E-value=0.0022 Score=53.85 Aligned_cols=31 Identities=35% Similarity=0.343 Sum_probs=27.5
Q ss_pred CCceEEEecCcccccChHHHHHHHHHHHHHh
Q 029420 1 MADLYALDFDGVLCDSCGESSLSAVKAAKVR 31 (193)
Q Consensus 1 ~~~~vlFDlDGTLvDS~~di~~a~~~al~~l 31 (193)
|.++|+||+||||+++-..+...+..+++++
T Consensus 2 ~~kli~~DlDGTLl~~~~~i~~~~~~al~~~ 32 (264)
T COG0561 2 MIKLLAFDLDGTLLDSNKTISPETKEALARL 32 (264)
T ss_pred CeeEEEEcCCCCccCCCCccCHHHHHHHHHH
Confidence 5799999999999999998888888888855
No 87
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=96.30 E-value=0.0022 Score=48.71 Aligned_cols=34 Identities=15% Similarity=-0.033 Sum_probs=30.1
Q ss_pred CCCCCHHHHHH---hCCCcEEEEcCc-H--HHHHHHHHHh
Q 029420 139 RFYPGIPDALK---FASSRIYIVTTK-A--VSQMLYYESL 172 (193)
Q Consensus 139 ~lypGV~e~L~---~~gi~laVvTnK-~--~a~~lL~~~~ 172 (193)
++|||+.++|+ ++|++++|+||+ + .+..+++++.
T Consensus 29 ~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l~~~~ 68 (128)
T TIGR01681 29 VTIKEIRDKLQTLKKNGFLLALASYNDDPHVAYELLKIFE 68 (128)
T ss_pred HHHHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHHHhcc
Confidence 78999999999 899999999999 5 7878888764
No 88
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=96.28 E-value=0.0043 Score=48.18 Aligned_cols=37 Identities=14% Similarity=0.040 Sum_probs=33.1
Q ss_pred CCCCCCCHHHHHH--hCCCcEEEEcCcH--HHHHHHHHHhH
Q 029420 137 ANRFYPGIPDALK--FASSRIYIVTTKA--VSQMLYYESLQ 173 (193)
Q Consensus 137 ~~~lypGV~e~L~--~~gi~laVvTnK~--~a~~lL~~~~~ 173 (193)
..++|||+.++|+ .++++++|+||++ .++.+++++..
T Consensus 43 ~v~l~pG~~e~L~~L~~~~~l~I~Ts~~~~~~~~il~~l~~ 83 (148)
T smart00577 43 YVKKRPGVDEFLKRASELFELVVFTAGLRMYADPVLDLLDP 83 (148)
T ss_pred EEEECCCHHHHHHHHHhccEEEEEeCCcHHHHHHHHHHhCc
Confidence 4678999999999 7789999999999 99999998854
No 89
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=96.21 E-value=0.0032 Score=51.37 Aligned_cols=30 Identities=30% Similarity=0.365 Sum_probs=23.6
Q ss_pred CceEEEecCcccccChHHHHHHHHHHHHHh
Q 029420 2 ADLYALDFDGVLCDSCGESSLSAVKAAKVR 31 (193)
Q Consensus 2 ~~~vlFDlDGTLvDS~~di~~a~~~al~~l 31 (193)
.|+|+||+||||+|+-..+......+++++
T Consensus 1 ik~v~~DlDGTLl~~~~~i~~~~~~~i~~l 30 (215)
T TIGR01487 1 IKLVAIDIDGTLTEPNRMISERAIEAIRKA 30 (215)
T ss_pred CcEEEEecCCCcCCCCcccCHHHHHHHHHH
Confidence 378999999999998766666666666666
No 90
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=96.12 E-value=0.0027 Score=51.68 Aligned_cols=27 Identities=33% Similarity=0.351 Sum_probs=21.7
Q ss_pred EEEecCcccccChHHHHHHHHHHHHHh
Q 029420 5 YALDFDGVLCDSCGESSLSAVKAAKVR 31 (193)
Q Consensus 5 vlFDlDGTLvDS~~di~~a~~~al~~l 31 (193)
|+|||||||+|+-..+......+++++
T Consensus 1 i~~DlDGTLl~~~~~i~~~~~~al~~l 27 (225)
T TIGR01482 1 IASDIDGTLTDPNRAINESALEAIRKA 27 (225)
T ss_pred CeEeccCccCCCCcccCHHHHHHHHHH
Confidence 689999999999777777666677664
No 91
>PLN02423 phosphomannomutase
Probab=95.94 E-value=0.0043 Score=52.29 Aligned_cols=29 Identities=21% Similarity=0.202 Sum_probs=23.8
Q ss_pred ceEEEecCcccccChHHHHHHHHHHHHHh
Q 029420 3 DLYALDFDGVLCDSCGESSLSAVKAAKVR 31 (193)
Q Consensus 3 ~~vlFDlDGTLvDS~~di~~a~~~al~~l 31 (193)
.+++||+||||+|+-..+-.....+++++
T Consensus 8 ~i~~~D~DGTLl~~~~~i~~~~~~ai~~l 36 (245)
T PLN02423 8 VIALFDVDGTLTAPRKEATPEMLEFMKEL 36 (245)
T ss_pred eEEEEeccCCCcCCCCcCCHHHHHHHHHH
Confidence 45669999999999887877777777777
No 92
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=95.86 E-value=0.0088 Score=49.95 Aligned_cols=37 Identities=19% Similarity=0.270 Sum_probs=31.0
Q ss_pred CCCCCCCHHHHHH---hCCCcEEEEcCcH--HHH--HHHHHHhH
Q 029420 137 ANRFYPGIPDALK---FASSRIYIVTTKA--VSQ--MLYYESLQ 173 (193)
Q Consensus 137 ~~~lypGV~e~L~---~~gi~laVvTnK~--~a~--~lL~~~~~ 173 (193)
..++|||+.++|+ ++|++++|+|||+ .+. ..|++++.
T Consensus 22 ~~~~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~gl 65 (242)
T TIGR01459 22 GNHTYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSLGI 65 (242)
T ss_pred CCccCccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHHCCC
Confidence 4689999999999 8999999999999 444 67787743
No 93
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=95.58 E-value=0.075 Score=49.61 Aligned_cols=52 Identities=12% Similarity=0.098 Sum_probs=35.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCHHHHHHhCCCcEEEEcCcH--HHHHHHHH
Q 029420 109 SENRDALVDLFGKVRDEWMDKDLTTWIGANRFYPGIPDALKFASSRIYIVTTKA--VSQMLYYE 170 (193)
Q Consensus 109 g~~~e~~~~~~~~~r~~y~~~y~~~~~~~~~lypGV~e~L~~~gi~laVvTnK~--~a~~lL~~ 170 (193)
|++.+++++...++.+.|... .++|.+.+.++++|.. +|+|.-+ .++++.+.
T Consensus 89 G~~~~el~~~~r~~l~~f~~~---------~l~~~a~~~~~~~g~~-vvVSASp~~~Vepfa~~ 142 (497)
T PLN02177 89 GLKIRDIELVSRSVLPKFYAE---------DVHPETWRVFNSFGKR-YIITASPRIMVEPFVKT 142 (497)
T ss_pred CCCHHHHHHHHHHHHHHHHHH---------hcCHHHHHHHHhCCCE-EEEECCcHHHHHHHHHH
Confidence 777777766655555554321 3778788777766654 8888877 78888865
No 94
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=95.44 E-value=0.016 Score=51.85 Aligned_cols=27 Identities=30% Similarity=0.420 Sum_probs=24.4
Q ss_pred ccCCCCCCCHHHHHH---hCCCcEEEEcCc
Q 029420 135 IGANRFYPGIPDALK---FASSRIYIVTTK 161 (193)
Q Consensus 135 ~~~~~lypGV~e~L~---~~gi~laVvTnK 161 (193)
....++||||.++|+ ++|++++|+|||
T Consensus 26 ~~~~~l~pGV~e~L~~Lk~~G~kL~IvTNq 55 (354)
T PRK05446 26 LDKLAFEPGVIPALLKLQKAGYKLVMVTNQ 55 (354)
T ss_pred cccceECcCHHHHHHHHHhCCCeEEEEECC
Confidence 445799999999999 889999999997
No 95
>PLN02887 hydrolase family protein
Probab=95.44 E-value=0.0095 Score=56.53 Aligned_cols=31 Identities=29% Similarity=0.218 Sum_probs=24.7
Q ss_pred CCceEEEecCcccccChHHHHHHHHHHHHHh
Q 029420 1 MADLYALDFDGVLCDSCGESSLSAVKAAKVR 31 (193)
Q Consensus 1 ~~~~vlFDlDGTLvDS~~di~~a~~~al~~l 31 (193)
|.|+|+||+||||+|+-..+......+++++
T Consensus 307 ~iKLIa~DLDGTLLn~d~~Is~~t~eAI~kl 337 (580)
T PLN02887 307 KFSYIFCDMDGTLLNSKSQISETNAKALKEA 337 (580)
T ss_pred CccEEEEeCCCCCCCCCCccCHHHHHHHHHH
Confidence 5689999999999998766766666666665
No 96
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=95.43 E-value=0.0085 Score=46.00 Aligned_cols=14 Identities=14% Similarity=0.306 Sum_probs=12.9
Q ss_pred ceEEEecCcccccC
Q 029420 3 DLYALDFDGVLCDS 16 (193)
Q Consensus 3 ~~vlFDlDGTLvDS 16 (193)
|+|+||+||||++.
T Consensus 2 K~i~~DiDGTL~~~ 15 (126)
T TIGR01689 2 KRLVMDLDNTITLT 15 (126)
T ss_pred CEEEEeCCCCcccC
Confidence 79999999999975
No 97
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=95.42 E-value=0.019 Score=48.20 Aligned_cols=25 Identities=12% Similarity=0.329 Sum_probs=23.0
Q ss_pred CCCCCCHHHHHH---hCCCcEEEEcCcH
Q 029420 138 NRFYPGIPDALK---FASSRIYIVTTKA 162 (193)
Q Consensus 138 ~~lypGV~e~L~---~~gi~laVvTnK~ 162 (193)
..+.||+.++++ ++|+++..+||.+
T Consensus 114 ~~aip~a~~l~~~~~~~G~~V~~iT~R~ 141 (229)
T PF03767_consen 114 APAIPGALELYNYARSRGVKVFFITGRP 141 (229)
T ss_dssp GEEETTHHHHHHHHHHTTEEEEEEEEEE
T ss_pred CcccHHHHHHHHHHHHCCCeEEEEecCC
Confidence 378899999999 9999999999988
No 98
>PRK06769 hypothetical protein; Validated
Probab=95.35 E-value=0.011 Score=47.07 Aligned_cols=25 Identities=16% Similarity=0.289 Sum_probs=23.2
Q ss_pred CCCCCCHHHHHH---hCCCcEEEEcCcH
Q 029420 138 NRFYPGIPDALK---FASSRIYIVTTKA 162 (193)
Q Consensus 138 ~~lypGV~e~L~---~~gi~laVvTnK~ 162 (193)
.++||||.++|+ ++|++++|+|||+
T Consensus 27 ~~~~pgv~e~L~~Lk~~G~~l~I~Tn~~ 54 (173)
T PRK06769 27 FTLFPFTKASLQKLKANHIKIFSFTNQP 54 (173)
T ss_pred eEECCCHHHHHHHHHHCCCEEEEEECCc
Confidence 478999999999 8899999999997
No 99
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=95.32 E-value=0.0082 Score=48.57 Aligned_cols=27 Identities=33% Similarity=0.346 Sum_probs=21.0
Q ss_pred EEEecCcccccChHHHHHHHHHHHHHh
Q 029420 5 YALDFDGVLCDSCGESSLSAVKAAKVR 31 (193)
Q Consensus 5 vlFDlDGTLvDS~~di~~a~~~al~~l 31 (193)
|+|||||||+++-..+......+++.+
T Consensus 1 i~~DlDGTLl~~~~~i~~~~~~al~~l 27 (254)
T PF08282_consen 1 IFSDLDGTLLNSDGKISPETIEALKEL 27 (254)
T ss_dssp EEEECCTTTCSTTSSSCHHHHHHHHHH
T ss_pred cEEEECCceecCCCeeCHHHHHHHHhh
Confidence 689999999998766666666666655
No 100
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=95.31 E-value=0.011 Score=50.18 Aligned_cols=30 Identities=27% Similarity=0.083 Sum_probs=21.4
Q ss_pred CceEEEecCcccccChHHHHHHHHHHHHHh
Q 029420 2 ADLYALDFDGVLCDSCGESSLSAVKAAKVR 31 (193)
Q Consensus 2 ~~~vlFDlDGTLvDS~~di~~a~~~al~~l 31 (193)
.++|++|+||||+|+-..+......+++++
T Consensus 7 ~~lI~~DlDGTLL~~~~~i~~~~~~ai~~l 36 (271)
T PRK03669 7 PLLIFTDLDGTLLDSHTYDWQPAAPWLTRL 36 (271)
T ss_pred CeEEEEeCccCCcCCCCcCcHHHHHHHHHH
Confidence 378999999999998554544455555554
No 101
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=95.28 E-value=0.0086 Score=46.27 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=23.2
Q ss_pred CCCCCCHHHHHH---hCCCcEEEEcCcH
Q 029420 138 NRFYPGIPDALK---FASSRIYIVTTKA 162 (193)
Q Consensus 138 ~~lypGV~e~L~---~~gi~laVvTnK~ 162 (193)
.++|||+.++|+ ++|++++|+||++
T Consensus 26 ~~~~~g~~~~l~~Lk~~g~~~~I~Sn~~ 53 (147)
T TIGR01656 26 WQLRPGAVPALLTLRAAGYTVVVVTNQS 53 (147)
T ss_pred eEEcCChHHHHHHHHHCCCEEEEEeCCC
Confidence 479999999999 8999999999976
No 102
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=95.10 E-value=0.013 Score=51.25 Aligned_cols=29 Identities=28% Similarity=0.088 Sum_probs=21.8
Q ss_pred ceEEEecCcccccChHHHHHHHHHHHHHh
Q 029420 3 DLYALDFDGVLCDSCGESSLSAVKAAKVR 31 (193)
Q Consensus 3 ~~vlFDlDGTLvDS~~di~~a~~~al~~l 31 (193)
|+|++||||||.|+-..+...+..+++.+
T Consensus 2 KLIftDLDGTLLd~~~~~~~~a~~aL~~L 30 (302)
T PRK12702 2 RLVLSSLDGSLLDLEFNSYGAARQALAAL 30 (302)
T ss_pred cEEEEeCCCCCcCCCCcCCHHHHHHHHHH
Confidence 78999999999996665555555555555
No 103
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=95.03 E-value=0.028 Score=42.62 Aligned_cols=14 Identities=21% Similarity=0.451 Sum_probs=13.2
Q ss_pred ceEEEecCcccccC
Q 029420 3 DLYALDFDGVLCDS 16 (193)
Q Consensus 3 ~~vlFDlDGTLvDS 16 (193)
|+++|||||||.+.
T Consensus 1 kli~~DlD~Tl~~~ 14 (128)
T TIGR01681 1 KVIVFDLDNTLWTG 14 (128)
T ss_pred CEEEEeCCCCCCCC
Confidence 68999999999998
No 104
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=95.03 E-value=0.013 Score=49.03 Aligned_cols=28 Identities=29% Similarity=0.235 Sum_probs=20.1
Q ss_pred eEEEecCcccccChHHHHHHHHHHHHHh
Q 029420 4 LYALDFDGVLCDSCGESSLSAVKAAKVR 31 (193)
Q Consensus 4 ~vlFDlDGTLvDS~~di~~a~~~al~~l 31 (193)
+|+||+||||+|+-..+......+++++
T Consensus 1 li~~DlDGTLl~~~~~i~~~~~~~i~~l 28 (256)
T TIGR00099 1 LIFIDLDGTLLNDDHTISPSTKEALAKL 28 (256)
T ss_pred CEEEeCCCCCCCCCCccCHHHHHHHHHH
Confidence 5899999999998655555555555554
No 105
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=94.82 E-value=0.034 Score=47.55 Aligned_cols=37 Identities=16% Similarity=0.102 Sum_probs=32.7
Q ss_pred CCCCCCCHHHHHH---hCCCcEEEEcCcH--HHHHHHHHHhH
Q 029420 137 ANRFYPGIPDALK---FASSRIYIVTTKA--VSQMLYYESLQ 173 (193)
Q Consensus 137 ~~~lypGV~e~L~---~~gi~laVvTnK~--~a~~lL~~~~~ 173 (193)
...+|||+.++|+ ++|++++|+|||+ .++.+++++..
T Consensus 185 ~~~~~~~~~~~l~~l~~~g~~i~i~T~r~~~~~~~~l~~l~~ 226 (300)
T PHA02530 185 EDKPNPMVVELVKMYKAAGYEIIVVSGRDGVCEEDTVEWLRQ 226 (300)
T ss_pred cCCCChhHHHHHHHHHhCCCEEEEEeCCChhhHHHHHHHHHH
Confidence 3579999999999 8899999999999 88889988844
No 106
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=94.74 E-value=0.016 Score=46.65 Aligned_cols=28 Identities=32% Similarity=0.368 Sum_probs=19.4
Q ss_pred eEEEecCcccccCh-HHHHHHHHHHHHHh
Q 029420 4 LYALDFDGVLCDSC-GESSLSAVKAAKVR 31 (193)
Q Consensus 4 ~vlFDlDGTLvDS~-~di~~a~~~al~~l 31 (193)
+|+||+||||+++- ..+...+..+++++
T Consensus 1 li~~D~DgTL~~~~~~~~~~~~~~~l~~l 29 (204)
T TIGR01484 1 LLFFDLDGTLLDPNAHELSPETIEALERL 29 (204)
T ss_pred CEEEeCcCCCcCCCCCcCCHHHHHHHHHH
Confidence 58999999999875 33444555555555
No 107
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=94.50 E-value=0.35 Score=40.19 Aligned_cols=39 Identities=10% Similarity=0.177 Sum_probs=33.6
Q ss_pred CCCCCCCHHHHHH---hCCCcEEEEcCcH--HHHHHHHHHhHHH
Q 029420 137 ANRFYPGIPDALK---FASSRIYIVTTKA--VSQMLYYESLQEL 175 (193)
Q Consensus 137 ~~~lypGV~e~L~---~~gi~laVvTnK~--~a~~lL~~~~~~~ 175 (193)
..++=|||+++.. ++|.+++++|.-- ++..+-..++.+.
T Consensus 86 k~~lT~Gi~eLv~~L~~~~~~v~liSGGF~~~i~~Va~~Lgi~~ 129 (227)
T KOG1615|consen 86 KPTLTPGIRELVSRLHARGTQVYLISGGFRQLIEPVAEQLGIPK 129 (227)
T ss_pred CCccCCCHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHhCCcH
Confidence 4678899999998 9999999999988 8888888886554
No 108
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=94.18 E-value=0.019 Score=41.52 Aligned_cols=15 Identities=40% Similarity=0.474 Sum_probs=13.4
Q ss_pred eEEEecCcccccChH
Q 029420 4 LYALDFDGVLCDSCG 18 (193)
Q Consensus 4 ~vlFDlDGTLvDS~~ 18 (193)
+++||+||||+++-+
T Consensus 1 ~~vfD~D~tl~~~~~ 15 (139)
T cd01427 1 AVLFDLDGTLLDSEP 15 (139)
T ss_pred CeEEccCCceEccCc
Confidence 489999999999885
No 109
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=94.17 E-value=0.19 Score=43.50 Aligned_cols=64 Identities=8% Similarity=0.161 Sum_probs=44.5
Q ss_pred hhhhcchhhhhhhhcCCCHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCHHHHHH---hCCCcEEEEcCcH--HHHHHH
Q 029420 94 LENWSKIKPVIMEDWSENRDALVDLFGKVRDEWMDKDLTTWIGANRFYPGIPDALK---FASSRIYIVTTKA--VSQMLY 168 (193)
Q Consensus 94 ~~~~~~l~~~~~~~~g~~~e~~~~~~~~~r~~y~~~y~~~~~~~~~lypGV~e~L~---~~gi~laVvTnK~--~a~~lL 168 (193)
+..|=....+++..++++.+.+++.++. ...++.||+.++++ ++|++++|+|+-. .++.+|
T Consensus 90 m~eWw~k~~~l~~~~~~~~e~i~~~v~~--------------~~l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL 155 (277)
T TIGR01544 90 MVEWWTKSHGLLVQQAFPKAKIKEIVAE--------------SDVMLKDGYENFFDKLQQHSIPVFIFSAGIGNVLEEVL 155 (277)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHhh--------------cCCccCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHH
Confidence 3344344455555556666544332220 14678999999999 8999999999988 899999
Q ss_pred HHH
Q 029420 169 YES 171 (193)
Q Consensus 169 ~~~ 171 (193)
+++
T Consensus 156 ~~l 158 (277)
T TIGR01544 156 RQA 158 (277)
T ss_pred HHc
Confidence 875
No 110
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=94.17 E-value=0.033 Score=48.71 Aligned_cols=30 Identities=10% Similarity=0.068 Sum_probs=21.4
Q ss_pred CceEEEecCcccccChHHH---HHHHHHHHHHh
Q 029420 2 ADLYALDFDGVLCDSCGES---SLSAVKAAKVR 31 (193)
Q Consensus 2 ~~~vlFDlDGTLvDS~~di---~~a~~~al~~l 31 (193)
.++|+|||||||.+.-..+ -..+..+++++
T Consensus 126 ~kvIvFDLDgTLi~~~~~v~irdPgV~EaL~~L 158 (301)
T TIGR01684 126 PHVVVFDLDSTLITDEEPVRIRDPRIYDSLTEL 158 (301)
T ss_pred ceEEEEecCCCCcCCCCccccCCHHHHHHHHHH
Confidence 4789999999999986543 24455555555
No 111
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=94.13 E-value=0.035 Score=48.51 Aligned_cols=34 Identities=3% Similarity=0.083 Sum_probs=31.0
Q ss_pred CCCCCCCHHHHHH---hCCCcEEEEcCcH--HHHHHHHH
Q 029420 137 ANRFYPGIPDALK---FASSRIYIVTTKA--VSQMLYYE 170 (193)
Q Consensus 137 ~~~lypGV~e~L~---~~gi~laVvTnK~--~a~~lL~~ 170 (193)
...+|||+.++|+ ++|++++|||||+ .+..++++
T Consensus 29 ~~~~~~~~~e~L~~L~~~Gi~lai~S~n~~~~a~~~l~~ 67 (320)
T TIGR01686 29 LSPLHKTLQEKIKTLKKQGFLLALASKNDEDDAKKVFER 67 (320)
T ss_pred cCccHHHHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHh
Confidence 4568999999999 8999999999999 89999987
No 112
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=94.06 E-value=0.024 Score=45.54 Aligned_cols=15 Identities=40% Similarity=0.607 Sum_probs=13.8
Q ss_pred CceEEEecCcccccC
Q 029420 2 ADLYALDFDGVLCDS 16 (193)
Q Consensus 2 ~~~vlFDlDGTLvDS 16 (193)
.|+|+||+||||+|+
T Consensus 21 ikli~~D~Dgtl~~~ 35 (183)
T PRK09484 21 IRLLICDVDGVFSDG 35 (183)
T ss_pred ceEEEEcCCeeeecC
Confidence 579999999999996
No 113
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=94.05 E-value=0.029 Score=44.26 Aligned_cols=14 Identities=29% Similarity=0.420 Sum_probs=12.6
Q ss_pred eEEEecCcccccCh
Q 029420 4 LYALDFDGVLCDSC 17 (193)
Q Consensus 4 ~vlFDlDGTLvDS~ 17 (193)
+|+||+||||++|-
T Consensus 1 iVisDIDGTL~~sd 14 (157)
T smart00775 1 IVISDIDGTITKSD 14 (157)
T ss_pred CEEEecCCCCcccc
Confidence 58999999999985
No 114
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=93.89 E-value=0.041 Score=48.14 Aligned_cols=27 Identities=30% Similarity=0.290 Sum_probs=21.0
Q ss_pred eEEEecCcccccChHHHHHHHHHHHHHh
Q 029420 4 LYALDFDGVLCDSCGESSLSAVKAAKVR 31 (193)
Q Consensus 4 ~vlFDlDGTLvDS~~di~~a~~~al~~l 31 (193)
+++||+||||+++-.- ...+..+++.+
T Consensus 2 ~~ifD~DGvL~~g~~~-i~ga~eal~~L 28 (321)
T TIGR01456 2 GFAFDIDGVLFRGKKP-IAGASDALRRL 28 (321)
T ss_pred EEEEeCcCceECCccc-cHHHHHHHHHH
Confidence 5899999999999876 55555666666
No 115
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=93.87 E-value=0.067 Score=42.46 Aligned_cols=34 Identities=24% Similarity=0.374 Sum_probs=28.1
Q ss_pred CCCCCCHHHHHH---hCCCcEEEEcCcH---HHHHHHHHH
Q 029420 138 NRFYPGIPDALK---FASSRIYIVTTKA---VSQMLYYES 171 (193)
Q Consensus 138 ~~lypGV~e~L~---~~gi~laVvTnK~---~a~~lL~~~ 171 (193)
..+|||+.++|+ ++|++++|+||++ .+..+++++
T Consensus 42 ~~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~~~~~~~~~ 81 (170)
T TIGR01668 42 NEAYPALRDWIEELKAAGRKLLIVSNNAGEQRAKAVEKAL 81 (170)
T ss_pred CCcChhHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHc
Confidence 479999999999 8899999999987 555555554
No 116
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=93.76 E-value=0.24 Score=42.86 Aligned_cols=26 Identities=8% Similarity=0.075 Sum_probs=23.4
Q ss_pred CCCCCCCHHHHHH---hCCCcEEEEcCcH
Q 029420 137 ANRFYPGIPDALK---FASSRIYIVTTKA 162 (193)
Q Consensus 137 ~~~lypGV~e~L~---~~gi~laVvTnK~ 162 (193)
..++.||+.++.+ +.|+++.++||.+
T Consensus 143 ~ApAlp~al~ly~~l~~~G~kIf~VSgR~ 171 (275)
T TIGR01680 143 EAPALPETLKNYNKLVSLGFKIIFLSGRL 171 (275)
T ss_pred cCCCChHHHHHHHHHHHCCCEEEEEeCCc
Confidence 5678899999998 8999999999998
No 117
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=93.70 E-value=0.49 Score=39.02 Aligned_cols=36 Identities=11% Similarity=0.157 Sum_probs=31.4
Q ss_pred CCCCCCCHHHHHH---hCCCcEEEEcCcH--HHHHHHHHHh
Q 029420 137 ANRFYPGIPDALK---FASSRIYIVTTKA--VSQMLYYESL 172 (193)
Q Consensus 137 ~~~lypGV~e~L~---~~gi~laVvTnK~--~a~~lL~~~~ 172 (193)
..++=||..+..+ +++++..|+|+-. +..++++.+.
T Consensus 71 ~i~Idp~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~iv 111 (220)
T COG4359 71 DIKIDPGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIV 111 (220)
T ss_pred hcccCccHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhc
Confidence 3578899999999 9999999999977 9999988874
No 118
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=93.62 E-value=0.041 Score=44.81 Aligned_cols=14 Identities=43% Similarity=0.475 Sum_probs=12.3
Q ss_pred eEEEecCcccccCh
Q 029420 4 LYALDFDGVLCDSC 17 (193)
Q Consensus 4 ~vlFDlDGTLvDS~ 17 (193)
+|++|+||||.|+-
T Consensus 1 ~i~~DlDGTLL~~~ 14 (221)
T TIGR02463 1 WVFSDLDGTLLDSH 14 (221)
T ss_pred CEEEeCCCCCcCCC
Confidence 48999999999974
No 119
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=93.59 E-value=0.046 Score=47.84 Aligned_cols=30 Identities=10% Similarity=0.058 Sum_probs=21.1
Q ss_pred CceEEEecCcccccChHHH---HHHHHHHHHHh
Q 029420 2 ADLYALDFDGVLCDSCGES---SLSAVKAAKVR 31 (193)
Q Consensus 2 ~~~vlFDlDGTLvDS~~di---~~a~~~al~~l 31 (193)
.++|+||+||||+++-.++ -..+..+++++
T Consensus 128 ~~~i~~D~D~TL~~~~~~v~irdp~V~EtL~eL 160 (303)
T PHA03398 128 PHVIVFDLDSTLITDEEPVRIRDPFVYDSLDEL 160 (303)
T ss_pred ccEEEEecCCCccCCCCccccCChhHHHHHHHH
Confidence 4789999999999996655 23344444444
No 120
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=93.48 E-value=0.26 Score=41.60 Aligned_cols=26 Identities=12% Similarity=0.119 Sum_probs=23.7
Q ss_pred CCCCCCCHHHHHH---hCCCcEEEEcCcH
Q 029420 137 ANRFYPGIPDALK---FASSRIYIVTTKA 162 (193)
Q Consensus 137 ~~~lypGV~e~L~---~~gi~laVvTnK~ 162 (193)
...+.||+.++++ ++|+++.++|+.+
T Consensus 118 ~apaip~al~l~~~l~~~G~~Vf~lTGR~ 146 (229)
T TIGR01675 118 AAPALPEGLKLYQKIIELGIKIFLLSGRW 146 (229)
T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 4678999999998 8999999999998
No 121
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=93.47 E-value=0.031 Score=43.42 Aligned_cols=16 Identities=38% Similarity=0.592 Sum_probs=13.3
Q ss_pred ceEEEecCcccccChH
Q 029420 3 DLYALDFDGVLCDSCG 18 (193)
Q Consensus 3 ~~vlFDlDGTLvDS~~ 18 (193)
|+++|||||||+++..
T Consensus 1 k~LVlDLD~TLv~~~~ 16 (159)
T PF03031_consen 1 KTLVLDLDGTLVHSSS 16 (159)
T ss_dssp EEEEEE-CTTTEEEES
T ss_pred CEEEEeCCCcEEEEee
Confidence 5799999999999875
No 122
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=93.43 E-value=0.041 Score=42.42 Aligned_cols=16 Identities=31% Similarity=0.343 Sum_probs=14.3
Q ss_pred ceEEEecCcccccChH
Q 029420 3 DLYALDFDGVLCDSCG 18 (193)
Q Consensus 3 ~~vlFDlDGTLvDS~~ 18 (193)
++++||+||||.++-.
T Consensus 1 ~~~~~d~dgtl~~~~~ 16 (147)
T TIGR01656 1 PALFLDRDGVINEDTV 16 (147)
T ss_pred CeEEEeCCCceeccCC
Confidence 5799999999999885
No 123
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=93.43 E-value=0.039 Score=45.87 Aligned_cols=27 Identities=22% Similarity=0.103 Sum_probs=17.1
Q ss_pred eEEEecCcccccChHHHHHHHHHHHHHh
Q 029420 4 LYALDFDGVLCDSCGESSLSAVKAAKVR 31 (193)
Q Consensus 4 ~vlFDlDGTLvDS~~di~~a~~~al~~l 31 (193)
+|+||+||||.|+-. +......+++++
T Consensus 1 li~~DlDGTLl~~~~-~~~~~~~ai~~l 27 (225)
T TIGR02461 1 VIFTDLDGTLLPPGY-EPGPAREALEEL 27 (225)
T ss_pred CEEEeCCCCCcCCCC-CchHHHHHHHHH
Confidence 589999999998432 233344444444
No 124
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=93.40 E-value=0.11 Score=41.93 Aligned_cols=37 Identities=14% Similarity=0.253 Sum_probs=26.5
Q ss_pred CCCCCCCHHHHHH---hCCCcEEEEc--CcH-HHHHHHHHHhH
Q 029420 137 ANRFYPGIPDALK---FASSRIYIVT--TKA-VSQMLYYESLQ 173 (193)
Q Consensus 137 ~~~lypGV~e~L~---~~gi~laVvT--nK~-~a~~lL~~~~~ 173 (193)
..++||+|.+.|+ ++|+++|||| +-| -|+.+|+.+.-
T Consensus 43 ~v~lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~~L~~l~i 85 (169)
T PF12689_consen 43 EVSLYPDVPEILQELKERGVKLAVASRTDEPDWARELLKLLEI 85 (169)
T ss_dssp EE---TTHHHHHHHHHHCT--EEEEE--S-HHHHHHHHHHTT-
T ss_pred EEEeCcCHHHHHHHHHHCCCEEEEEECCCChHHHHHHHHhcCC
Confidence 3589999999999 8999999998 456 99999998843
No 125
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=93.29 E-value=0.045 Score=43.51 Aligned_cols=16 Identities=31% Similarity=0.538 Sum_probs=14.1
Q ss_pred CceEEEecCcccccCh
Q 029420 2 ADLYALDFDGVLCDSC 17 (193)
Q Consensus 2 ~~~vlFDlDGTLvDS~ 17 (193)
.|+++||+||||+++-
T Consensus 13 ~k~~~~D~Dgtl~~~~ 28 (166)
T TIGR01664 13 SKVAAFDLDGTLITTR 28 (166)
T ss_pred CcEEEEeCCCceEecC
Confidence 6899999999999854
No 126
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=93.21 E-value=0.11 Score=37.98 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=22.2
Q ss_pred CCCCCCCHHHHHH---hCCCcEEEEcCcH
Q 029420 137 ANRFYPGIPDALK---FASSRIYIVTTKA 162 (193)
Q Consensus 137 ~~~lypGV~e~L~---~~gi~laVvTnK~ 162 (193)
..+++||+.++|+ ++|+++.++||.+
T Consensus 12 g~~~ipga~e~l~~L~~~g~~~~~lTNns 40 (101)
T PF13344_consen 12 GNEPIPGAVEALDALRERGKPVVFLTNNS 40 (101)
T ss_dssp TTEE-TTHHHHHHHHHHTTSEEEEEES-S
T ss_pred CCCcCcCHHHHHHHHHHcCCCEEEEeCCC
Confidence 4679999999999 8999999999998
No 127
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=93.20 E-value=0.048 Score=45.70 Aligned_cols=15 Identities=40% Similarity=0.576 Sum_probs=13.2
Q ss_pred eEEEecCcccccChH
Q 029420 4 LYALDFDGVLCDSCG 18 (193)
Q Consensus 4 ~vlFDlDGTLvDS~~ 18 (193)
+|+||+||||+|+-.
T Consensus 1 li~~DlDGTll~~~~ 15 (256)
T TIGR01486 1 WIFTDLDGTLLDPHG 15 (256)
T ss_pred CEEEcCCCCCcCCCC
Confidence 589999999999865
No 128
>PRK10444 UMP phosphatase; Provisional
Probab=92.99 E-value=0.082 Score=44.76 Aligned_cols=23 Identities=22% Similarity=0.157 Sum_probs=17.1
Q ss_pred CceEEEecCcccccC---hHHHHHHH
Q 029420 2 ADLYALDFDGVLCDS---CGESSLSA 24 (193)
Q Consensus 2 ~~~vlFDlDGTLvDS---~~di~~a~ 24 (193)
.++|+||+||||.++ .|....+.
T Consensus 1 ~~~v~~DlDGtL~~~~~~~p~a~~~l 26 (248)
T PRK10444 1 IKNVICDIDGVLMHDNVAVPGAAEFL 26 (248)
T ss_pred CcEEEEeCCCceEeCCeeCccHHHHH
Confidence 478999999999999 44444333
No 129
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=92.92 E-value=0.046 Score=42.68 Aligned_cols=15 Identities=53% Similarity=0.760 Sum_probs=13.3
Q ss_pred CceEEEecCcccccC
Q 029420 2 ADLYALDFDGVLCDS 16 (193)
Q Consensus 2 ~~~vlFDlDGTLvDS 16 (193)
.|+|+||+||||+|.
T Consensus 1 ~~~~~~D~Dgtl~~~ 15 (154)
T TIGR01670 1 IRLLILDVDGVLTDG 15 (154)
T ss_pred CeEEEEeCceeEEcC
Confidence 378999999999994
No 130
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=92.73 E-value=0.07 Score=45.51 Aligned_cols=14 Identities=29% Similarity=0.553 Sum_probs=12.3
Q ss_pred ceEEEecCcccccC
Q 029420 3 DLYALDFDGVLCDS 16 (193)
Q Consensus 3 ~~vlFDlDGTLvDS 16 (193)
.+|+||+||||++.
T Consensus 15 ~li~~D~DGTLl~~ 28 (266)
T PRK10187 15 YAWFFDLDGTLAEI 28 (266)
T ss_pred EEEEEecCCCCCCC
Confidence 48999999999983
No 131
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=92.66 E-value=0.19 Score=36.09 Aligned_cols=35 Identities=29% Similarity=0.385 Sum_probs=30.7
Q ss_pred CCCCCCCHHHHHH---hCCCcEEEEcCcH--HHHHHHHHH
Q 029420 137 ANRFYPGIPDALK---FASSRIYIVTTKA--VSQMLYYES 171 (193)
Q Consensus 137 ~~~lypGV~e~L~---~~gi~laVvTnK~--~a~~lL~~~ 171 (193)
..+++||+.++|+ ++|++++|+||.. .++..++.+
T Consensus 22 ~~~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~~~~ 61 (139)
T cd01427 22 ELELYPGVKEALKELKEKGIKLALATNKSRREVLELLEEL 61 (139)
T ss_pred cCCcCcCHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHHc
Confidence 4689999999999 7899999999988 888888775
No 132
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=92.39 E-value=0.11 Score=48.73 Aligned_cols=39 Identities=13% Similarity=0.123 Sum_probs=34.5
Q ss_pred ccCCCCCCCHHHHHH---hCCC-cEEEEcCcH--HHHHHHHHHhH
Q 029420 135 IGANRFYPGIPDALK---FASS-RIYIVTTKA--VSQMLYYESLQ 173 (193)
Q Consensus 135 ~~~~~lypGV~e~L~---~~gi-~laVvTnK~--~a~~lL~~~~~ 173 (193)
....++|||+.++|+ ++|+ +++|+||++ .++.++++++-
T Consensus 358 ~~~d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~~a~~i~~~lgi 402 (536)
T TIGR01512 358 LLSDEPRPDAAEAIAELKALGIEKVVMLTGDRRAVAERVARELGI 402 (536)
T ss_pred EEeccchHHHHHHHHHHHHcCCCcEEEEcCCCHHHHHHHHHHcCC
Confidence 345689999999999 8999 999999999 99999999854
No 133
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=92.25 E-value=0.12 Score=45.34 Aligned_cols=33 Identities=12% Similarity=-0.044 Sum_probs=29.0
Q ss_pred CCCHHHHHH---hCCCcEEEEcCcH--HHHHHHHHHhH
Q 029420 141 YPGIPDALK---FASSRIYIVTTKA--VSQMLYYESLQ 173 (193)
Q Consensus 141 ypGV~e~L~---~~gi~laVvTnK~--~a~~lL~~~~~ 173 (193)
=|||.++|+ ++|++++|+|||+ .+..+|++++-
T Consensus 150 dp~V~EtL~eLkekGikLaIvTNg~Re~v~~~Le~lgL 187 (303)
T PHA03398 150 DPFVYDSLDELKERGCVLVLWSYGNREHVVHSLKETKL 187 (303)
T ss_pred ChhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHcCC
Confidence 499999999 8999999999997 88889988743
No 134
>PLN02645 phosphoglycolate phosphatase
Probab=92.20 E-value=0.088 Score=45.82 Aligned_cols=59 Identities=17% Similarity=0.280 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccccCCCCCCCHHHHHH---hCCCcEEEEcCcH--HHHHHHHHH
Q 029420 112 RDALVDLFGKVRDEWMDKDLTTWIGANRFYPGIPDALK---FASSRIYIVTTKA--VSQMLYYES 171 (193)
Q Consensus 112 ~e~~~~~~~~~r~~y~~~y~~~~~~~~~lypGV~e~L~---~~gi~laVvTnK~--~a~~lL~~~ 171 (193)
.+++.+.++.|+-.+.+.+..-|. ...+|||+.++|+ ++|+++.++||++ ..+.+++.+
T Consensus 18 ~~~~~~~~~~~~~~~~D~DGtl~~-~~~~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l 81 (311)
T PLN02645 18 LENADELIDSVETFIFDCDGVIWK-GDKLIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKF 81 (311)
T ss_pred HHHHHHHHHhCCEEEEeCcCCeEe-CCccCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHH
Confidence 444555555555555554444443 3479999999998 8999999999988 555555443
No 135
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=92.03 E-value=0.078 Score=41.94 Aligned_cols=16 Identities=25% Similarity=0.445 Sum_probs=11.8
Q ss_pred ceEEEecCcccccChH
Q 029420 3 DLYALDFDGVLCDSCG 18 (193)
Q Consensus 3 ~~vlFDlDGTLvDS~~ 18 (193)
|+++||+||||+-+-.
T Consensus 1 Kia~fD~DgTLi~~~s 16 (159)
T PF08645_consen 1 KIAFFDLDGTLIKTKS 16 (159)
T ss_dssp SEEEE-SCTTTEE-ST
T ss_pred CEEEEeCCCCccCCCC
Confidence 6889999999987654
No 136
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=91.87 E-value=0.17 Score=40.05 Aligned_cols=36 Identities=11% Similarity=-0.043 Sum_probs=31.4
Q ss_pred CCCCCHHHHHH--hCCCcEEEEcCcH--HHHHHHHHHhHH
Q 029420 139 RFYPGIPDALK--FASSRIYIVTTKA--VSQMLYYESLQE 174 (193)
Q Consensus 139 ~lypGV~e~L~--~~gi~laVvTnK~--~a~~lL~~~~~~ 174 (193)
+.=||+.++|+ .+.+.++|.|+++ .|+++++++.+.
T Consensus 42 ~~RPgl~eFL~~l~~~yei~I~Ts~~~~yA~~il~~ldp~ 81 (162)
T TIGR02251 42 FKRPHVDEFLERVSKWYELVIFTASLEEYADPVLDILDRG 81 (162)
T ss_pred EECCCHHHHHHHHHhcCEEEEEcCCcHHHHHHHHHHHCcC
Confidence 45599999999 5569999999999 999999998754
No 137
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=91.77 E-value=0.085 Score=42.29 Aligned_cols=15 Identities=47% Similarity=0.727 Sum_probs=13.9
Q ss_pred CceEEEecCcccccC
Q 029420 2 ADLYALDFDGVLCDS 16 (193)
Q Consensus 2 ~~~vlFDlDGTLvDS 16 (193)
.|+++||+||||.|.
T Consensus 7 i~~~v~d~dGv~tdg 21 (169)
T TIGR02726 7 IKLVILDVDGVMTDG 21 (169)
T ss_pred CeEEEEeCceeeECC
Confidence 479999999999998
No 138
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=91.61 E-value=0.17 Score=41.78 Aligned_cols=25 Identities=16% Similarity=0.096 Sum_probs=18.8
Q ss_pred eEEEecCcccccChHHHHHHHHHHHH
Q 029420 4 LYALDFDGVLCDSCGESSLSAVKAAK 29 (193)
Q Consensus 4 ~vlFDlDGTLvDS~~di~~a~~~al~ 29 (193)
+|++||||||.|+-..+.... .+++
T Consensus 1 li~~DlDgTLl~~~~~~~~~~-~~~~ 25 (236)
T TIGR02471 1 LIITDLDNTLLGDDEGLASFV-ELLR 25 (236)
T ss_pred CeEEeccccccCCHHHHHHHH-HHHH
Confidence 588999999999977665544 5554
No 139
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=91.54 E-value=0.12 Score=50.00 Aligned_cols=30 Identities=23% Similarity=0.268 Sum_probs=19.4
Q ss_pred CceEEEecCcccccChHHHHHHHHHHHHHh
Q 029420 2 ADLYALDFDGVLCDSCGESSLSAVKAAKVR 31 (193)
Q Consensus 2 ~~~vlFDlDGTLvDS~~di~~a~~~al~~l 31 (193)
.|+|++|+||||+|+-..+......+++.+
T Consensus 416 ~KLIfsDLDGTLLd~d~~i~~~t~eAL~~L 445 (694)
T PRK14502 416 KKIVYTDLDGTLLNPLTYSYSTALDALRLL 445 (694)
T ss_pred eeEEEEECcCCCcCCCCccCHHHHHHHHHH
Confidence 378999999999996433333333444444
No 140
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=91.43 E-value=0.18 Score=47.41 Aligned_cols=38 Identities=13% Similarity=0.131 Sum_probs=33.8
Q ss_pred cCCCCCCCHHHHHH---hCC-CcEEEEcCcH--HHHHHHHHHhH
Q 029420 136 GANRFYPGIPDALK---FAS-SRIYIVTTKA--VSQMLYYESLQ 173 (193)
Q Consensus 136 ~~~~lypGV~e~L~---~~g-i~laVvTnK~--~a~~lL~~~~~ 173 (193)
....+|||+.++|+ ++| ++++|+|||+ .++.++++++.
T Consensus 381 ~~d~~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~a~~i~~~lgi 424 (556)
T TIGR01525 381 LRDQLRPEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVAAELGI 424 (556)
T ss_pred ecccchHhHHHHHHHHHHcCCCeEEEEeCCCHHHHHHHHHHhCC
Confidence 34689999999999 889 9999999999 99999999843
No 141
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=91.31 E-value=0.17 Score=44.34 Aligned_cols=32 Identities=13% Similarity=-0.035 Sum_probs=28.5
Q ss_pred CCCHHHHHH---hCCCcEEEEcCcH--HHHHHHHHHh
Q 029420 141 YPGIPDALK---FASSRIYIVTTKA--VSQMLYYESL 172 (193)
Q Consensus 141 ypGV~e~L~---~~gi~laVvTnK~--~a~~lL~~~~ 172 (193)
=||+.++|+ ++|++++|+||++ .+...|++++
T Consensus 148 dPgV~EaL~~LkekGikLaIaTS~~Re~v~~~L~~lG 184 (301)
T TIGR01684 148 DPRIYDSLTELKKRGCILVLWSYGDRDHVVESMRKVK 184 (301)
T ss_pred CHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcC
Confidence 399999999 8999999999998 8888888874
No 142
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=91.07 E-value=0.091 Score=43.96 Aligned_cols=14 Identities=29% Similarity=0.700 Sum_probs=12.4
Q ss_pred ceEEEecCcccccC
Q 029420 3 DLYALDFDGVLCDS 16 (193)
Q Consensus 3 ~~vlFDlDGTLvDS 16 (193)
.+++||+||||++.
T Consensus 4 ~~l~lD~DGTL~~~ 17 (244)
T TIGR00685 4 RAFFFDYDGTLSEI 17 (244)
T ss_pred EEEEEecCccccCC
Confidence 57999999999984
No 143
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=91.04 E-value=0.24 Score=41.31 Aligned_cols=28 Identities=21% Similarity=0.208 Sum_probs=19.3
Q ss_pred eEEEecCccccc---ChHHHHHHHHHHHHHh
Q 029420 4 LYALDFDGVLCD---SCGESSLSAVKAAKVR 31 (193)
Q Consensus 4 ~vlFDlDGTLvD---S~~di~~a~~~al~~l 31 (193)
+|+.||||||+| +-..+..-...+++++
T Consensus 3 li~tDlDGTLl~~~~~~~~~~~~~~~~i~~~ 33 (249)
T TIGR01485 3 LLVSDLDNTLVDHTDGDNQALLRLNALLEDH 33 (249)
T ss_pred EEEEcCCCcCcCCCCCChHHHHHHHHHHHHh
Confidence 678899999997 4455555555555554
No 144
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=90.90 E-value=0.17 Score=42.78 Aligned_cols=25 Identities=16% Similarity=0.181 Sum_probs=20.9
Q ss_pred CCCCCCHHHHHH---hCCCcEEEEcCcH
Q 029420 138 NRFYPGIPDALK---FASSRIYIVTTKA 162 (193)
Q Consensus 138 ~~lypGV~e~L~---~~gi~laVvTnK~ 162 (193)
+-.|+++.++++ +.+++++|+|||+
T Consensus 119 ~~~y~~l~~a~~~L~~~~~~~~iatn~~ 146 (257)
T TIGR01458 119 HFSYQILNQAFRLLLDGAKPLLIAIGKG 146 (257)
T ss_pred ccCHHHHHHHHHHHHcCCCCEEEEeCCC
Confidence 345889999888 6788999999998
No 145
>PLN02499 glycerol-3-phosphate acyltransferase
Probab=90.73 E-value=1.5 Score=41.01 Aligned_cols=53 Identities=8% Similarity=-0.001 Sum_probs=31.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCHHHHHHhCCCcEEEEcCcH--HHHHHHHHH
Q 029420 109 SENRDALVDLFGKVRDEWMDKDLTTWIGANRFYPGIPDALKFASSRIYIVTTKA--VSQMLYYES 171 (193)
Q Consensus 109 g~~~e~~~~~~~~~r~~y~~~y~~~~~~~~~lypGV~e~L~~~gi~laVvTnK~--~a~~lL~~~ 171 (193)
|+..+++++.-.++-..| |.+... |...+...+.| +.+|+|.-| ++++.++.+
T Consensus 75 Gl~~~die~vaRavlpkf---~~~dv~------~e~~~~~~~~g-~~vVVTAsPrvmVEpFake~ 129 (498)
T PLN02499 75 GVHESEIESVARAVLPKF---YMDDVD------MEAWKVFSSCD-KRVVVTRMPRVMVERFAKEH 129 (498)
T ss_pred CCCHHHHHHHHHHHhhHH---HHhhCC------HHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHh
Confidence 666766655555454443 222211 22333333666 899999888 888888874
No 146
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=90.24 E-value=0.14 Score=43.76 Aligned_cols=24 Identities=13% Similarity=0.289 Sum_probs=20.1
Q ss_pred CCCCCCHHHHHH---hCCCcEEEEcCcH
Q 029420 138 NRFYPGIPDALK---FASSRIYIVTTKA 162 (193)
Q Consensus 138 ~~lypGV~e~L~---~~gi~laVvTnK~ 162 (193)
.--|||+.++|+ ++|+ ++|+|||+
T Consensus 142 ~~~y~~i~~~l~~L~~~g~-~~i~Tn~d 168 (279)
T TIGR01452 142 HFSYAKLREACAHLREPGC-LFVATNRD 168 (279)
T ss_pred CCCHHHHHHHHHHHhcCCC-EEEEeCCC
Confidence 345999999999 5676 89999998
No 147
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=90.09 E-value=0.14 Score=43.07 Aligned_cols=29 Identities=17% Similarity=0.140 Sum_probs=20.4
Q ss_pred CceEEEecCcccccChHHHHHHHHHHHHHh
Q 029420 2 ADLYALDFDGVLCDSCGESSLSAVKAAKVR 31 (193)
Q Consensus 2 ~~~vlFDlDGTLvDS~~di~~a~~~al~~l 31 (193)
.|.++||+||||.++-..+-. +..+++.+
T Consensus 1 ~~~~~~D~DGtl~~~~~~i~~-a~~~l~~l 29 (249)
T TIGR01457 1 YKGYLIDLDGTMYKGKERIPE-AETFVHEL 29 (249)
T ss_pred CCEEEEeCCCceEcCCeeCcC-HHHHHHHH
Confidence 378999999999998765543 33444444
No 148
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=89.91 E-value=0.41 Score=38.99 Aligned_cols=48 Identities=23% Similarity=0.252 Sum_probs=35.4
Q ss_pred CCCCCHHHHHH---hCCCcEEEEcCcH-HHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 029420 139 RFYPGIPDALK---FASSRIYIVTTKA-VSQMLYYESLQELQYHLTEFMVWELVQ 189 (193)
Q Consensus 139 ~lypGV~e~L~---~~gi~laVvTnK~-~a~~lL~~~~~~~~~~~~~~~~~~~~~ 189 (193)
.+.||+.+.|. +.|++++|+||+. .++.- |-+.-+..++++|.|.|-+
T Consensus 31 ~~~~g~i~al~~l~~~gy~lVvvTNQsGi~rgy---f~~~~f~~~~~~m~~~l~~ 82 (181)
T COG0241 31 QFIPGVIPALLKLQRAGYKLVVVTNQSGIGRGY---FTEADFDKLHNKMLKILAS 82 (181)
T ss_pred ccCccHHHHHHHHHhCCCeEEEEECCCCccccC---ccHHHHHHHHHHHHHHHHH
Confidence 67899999999 9999999999998 33322 2334455667778777654
No 149
>PLN02645 phosphoglycolate phosphatase
Probab=89.64 E-value=0.19 Score=43.79 Aligned_cols=29 Identities=14% Similarity=0.201 Sum_probs=19.3
Q ss_pred CceEEEecCcccccChHHHHHHHHHHHHHh
Q 029420 2 ADLYALDFDGVLCDSCGESSLSAVKAAKVR 31 (193)
Q Consensus 2 ~~~vlFDlDGTLvDS~~di~~a~~~al~~l 31 (193)
.|+++||+||||.++-. ....+-.+++.+
T Consensus 28 ~~~~~~D~DGtl~~~~~-~~~ga~e~l~~l 56 (311)
T PLN02645 28 VETFIFDCDGVIWKGDK-LIEGVPETLDML 56 (311)
T ss_pred CCEEEEeCcCCeEeCCc-cCcCHHHHHHHH
Confidence 37899999999999653 334344444433
No 150
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=89.62 E-value=0.18 Score=40.40 Aligned_cols=17 Identities=47% Similarity=0.589 Sum_probs=15.2
Q ss_pred CCceEEEecCcccccCh
Q 029420 1 MADLYALDFDGVLCDSC 17 (193)
Q Consensus 1 ~~~~vlFDlDGTLvDS~ 17 (193)
|.|+++||.||||.|..
T Consensus 7 ~IkLli~DVDGvLTDG~ 23 (170)
T COG1778 7 NIKLLILDVDGVLTDGK 23 (170)
T ss_pred hceEEEEeccceeecCe
Confidence 46899999999999986
No 151
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=89.55 E-value=0.2 Score=40.36 Aligned_cols=14 Identities=29% Similarity=0.370 Sum_probs=10.6
Q ss_pred CceEEEecCccccc
Q 029420 2 ADLYALDFDGVLCD 15 (193)
Q Consensus 2 ~~~vlFDlDGTLvD 15 (193)
.++|+||||+||-+
T Consensus 3 PklvvFDLD~TlW~ 16 (169)
T PF12689_consen 3 PKLVVFDLDYTLWP 16 (169)
T ss_dssp -SEEEE-STTTSSS
T ss_pred CcEEEEcCcCCCCc
Confidence 58999999999854
No 152
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=89.32 E-value=1.5 Score=36.27 Aligned_cols=42 Identities=24% Similarity=0.453 Sum_probs=33.7
Q ss_pred HHHhhhhccccCCCCCCCHHHHHH---hCCCcEEEEcCcH-HHHHHH
Q 029420 126 WMDKDLTTWIGANRFYPGIPDALK---FASSRIYIVTTKA-VSQMLY 168 (193)
Q Consensus 126 y~~~y~~~~~~~~~lypGV~e~L~---~~gi~laVvTnK~-~a~~lL 168 (193)
|..-|+.+-+ ...+||.+.+.|+ ++|++++|-|+-+ -|++++
T Consensus 91 Wa~Gy~sgel-kahlypDav~~ik~wk~~g~~vyiYSSGSV~AQkL~ 136 (229)
T COG4229 91 WAHGYESGEL-KAHLYPDAVQAIKRWKALGMRVYIYSSGSVKAQKLF 136 (229)
T ss_pred HHhccccCcc-ccccCHhHHHHHHHHHHcCCcEEEEcCCCchhHHHh
Confidence 4455666544 4679999999999 9999999999998 777764
No 153
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=89.06 E-value=0.21 Score=36.45 Aligned_cols=18 Identities=28% Similarity=0.455 Sum_probs=13.4
Q ss_pred EEEecCcccccChHHHHH
Q 029420 5 YALDFDGVLCDSCGESSL 22 (193)
Q Consensus 5 vlFDlDGTLvDS~~di~~ 22 (193)
++||+||||.++-.-+-.
T Consensus 1 ~l~D~dGvl~~g~~~ipg 18 (101)
T PF13344_consen 1 FLFDLDGVLYNGNEPIPG 18 (101)
T ss_dssp EEEESTTTSEETTEE-TT
T ss_pred CEEeCccEeEeCCCcCcC
Confidence 689999999987654433
No 154
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=88.71 E-value=0.18 Score=41.98 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=18.0
Q ss_pred EEEecCcccccChHHHHHHHHHHHHHh
Q 029420 5 YALDFDGVLCDSCGESSLSAVKAAKVR 31 (193)
Q Consensus 5 vlFDlDGTLvDS~~di~~a~~~al~~l 31 (193)
++||+||||.|+-.-+-.+ ..+++.+
T Consensus 1 ~lfD~DGvL~~~~~~~~~a-~e~i~~l 26 (236)
T TIGR01460 1 FLFDIDGVLWLGHKPIPGA-AEALNRL 26 (236)
T ss_pred CEEeCcCccCcCCccCcCH-HHHHHHH
Confidence 6899999999997765533 3444333
No 155
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=88.67 E-value=0.26 Score=38.13 Aligned_cols=16 Identities=31% Similarity=0.389 Sum_probs=14.2
Q ss_pred ceEEEecCcccccChH
Q 029420 3 DLYALDFDGVLCDSCG 18 (193)
Q Consensus 3 ~~vlFDlDGTLvDS~~ 18 (193)
..+++||||||+++..
T Consensus 3 ~~lvldld~tl~~~~~ 18 (148)
T smart00577 3 KTLVLDLDETLVHSTH 18 (148)
T ss_pred cEEEEeCCCCeECCCC
Confidence 5789999999999864
No 156
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=87.16 E-value=0.68 Score=38.98 Aligned_cols=28 Identities=29% Similarity=0.303 Sum_probs=21.1
Q ss_pred CceEEEecCcccccChHHHHHHHHHHHH
Q 029420 2 ADLYALDFDGVLCDSCGESSLSAVKAAK 29 (193)
Q Consensus 2 ~~~vlFDlDGTLvDS~~di~~a~~~al~ 29 (193)
..+++.||||||+|+-+......+..++
T Consensus 2 ~~ll~sDlD~Tl~~~~~~~~~~l~~~l~ 29 (247)
T PF05116_consen 2 PRLLASDLDGTLIDGDDEALARLEELLE 29 (247)
T ss_dssp SEEEEEETBTTTBHCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCcCCCHHHHHHHHHHHH
Confidence 3689999999999776666666655555
No 157
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=86.87 E-value=0.72 Score=35.90 Aligned_cols=29 Identities=7% Similarity=-0.153 Sum_probs=23.4
Q ss_pred HHHHHHhCCCcEEEEcCcH--HHHHHHHHHh
Q 029420 144 IPDALKFASSRIYIVTTKA--VSQMLYYESL 172 (193)
Q Consensus 144 V~e~L~~~gi~laVvTnK~--~a~~lL~~~~ 172 (193)
+.+.|+++|++++|+|||+ .+..++++++
T Consensus 36 ~i~~Lk~~G~~i~IvTn~~~~~~~~~l~~~g 66 (154)
T TIGR01670 36 GIRCALKSGIEVAIITGRKAKLVEDRCKTLG 66 (154)
T ss_pred HHHHHHHCCCEEEEEECCCCHHHHHHHHHcC
Confidence 3444558999999999999 8888888873
No 158
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=86.79 E-value=0.37 Score=38.13 Aligned_cols=14 Identities=29% Similarity=0.259 Sum_probs=12.3
Q ss_pred ceEEEecCcccccC
Q 029420 3 DLYALDFDGVLCDS 16 (193)
Q Consensus 3 ~~vlFDlDGTLvDS 16 (193)
++++||.||||+..
T Consensus 2 ~~~~~D~Dgtl~~~ 15 (176)
T TIGR00213 2 KAIFLDRDGTINID 15 (176)
T ss_pred CEEEEeCCCCEeCC
Confidence 78999999999953
No 159
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=86.75 E-value=0.64 Score=46.23 Aligned_cols=17 Identities=29% Similarity=0.487 Sum_probs=14.4
Q ss_pred CCceEEEecCcccccCh
Q 029420 1 MADLYALDFDGVLCDSC 17 (193)
Q Consensus 1 ~~~~vlFDlDGTLvDS~ 17 (193)
|.++|++|+||||++..
T Consensus 595 ~~rlI~LDyDGTLlp~~ 611 (854)
T PLN02205 595 TTRAILLDYDGTLMPQA 611 (854)
T ss_pred cCeEEEEecCCcccCCc
Confidence 46899999999999665
No 160
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=86.69 E-value=0.36 Score=39.69 Aligned_cols=15 Identities=40% Similarity=0.456 Sum_probs=13.4
Q ss_pred ceEEEecCcccccCh
Q 029420 3 DLYALDFDGVLCDSC 17 (193)
Q Consensus 3 ~~vlFDlDGTLvDS~ 17 (193)
+++++||||||+|+.
T Consensus 22 klLVLDLDeTLvh~~ 36 (195)
T TIGR02245 22 KLLVLDIDYTLFDHR 36 (195)
T ss_pred cEEEEeCCCceEccc
Confidence 689999999999863
No 161
>PLN03017 trehalose-phosphatase
Probab=86.48 E-value=0.44 Score=42.91 Aligned_cols=12 Identities=42% Similarity=0.686 Sum_probs=10.6
Q ss_pred ceEEEecCcccc
Q 029420 3 DLYALDFDGVLC 14 (193)
Q Consensus 3 ~~vlFDlDGTLv 14 (193)
.+|+||+||||+
T Consensus 112 ~llflD~DGTL~ 123 (366)
T PLN03017 112 IVMFLDYDGTLS 123 (366)
T ss_pred eEEEEecCCcCc
Confidence 368889999999
No 162
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=86.25 E-value=0.65 Score=45.11 Aligned_cols=13 Identities=46% Similarity=0.792 Sum_probs=12.3
Q ss_pred ceEEEecCccccc
Q 029420 3 DLYALDFDGVLCD 15 (193)
Q Consensus 3 ~~vlFDlDGTLvD 15 (193)
++|+||+||||++
T Consensus 493 rLi~~D~DGTL~~ 505 (726)
T PRK14501 493 RLLLLDYDGTLVP 505 (726)
T ss_pred eEEEEecCccccC
Confidence 7899999999998
No 163
>PLN02151 trehalose-phosphatase
Probab=85.97 E-value=0.48 Score=42.51 Aligned_cols=29 Identities=24% Similarity=0.210 Sum_probs=17.9
Q ss_pred ceEEEecCcccc----cChH-HHHHHHHHHHHHh
Q 029420 3 DLYALDFDGVLC----DSCG-ESSLSAVKAAKVR 31 (193)
Q Consensus 3 ~~vlFDlDGTLv----DS~~-di~~a~~~al~~l 31 (193)
.+++||+||||+ |.-. .+...+..+++.+
T Consensus 99 ~ll~lDyDGTL~PIv~~P~~A~~~~~~~~aL~~L 132 (354)
T PLN02151 99 IVMFLDYDGTLSPIVDDPDRAFMSKKMRNTVRKL 132 (354)
T ss_pred eEEEEecCccCCCCCCCcccccCCHHHHHHHHHH
Confidence 378899999999 3222 2333444555555
No 164
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=85.71 E-value=0.37 Score=41.55 Aligned_cols=17 Identities=35% Similarity=0.567 Sum_probs=14.8
Q ss_pred CceEEEecCcccccChH
Q 029420 2 ADLYALDFDGVLCDSCG 18 (193)
Q Consensus 2 ~~~vlFDlDGTLvDS~~ 18 (193)
.++++||+||||++-.+
T Consensus 18 ~~~~~lDyDGTl~~i~~ 34 (266)
T COG1877 18 KRLLFLDYDGTLTEIVP 34 (266)
T ss_pred ceEEEEecccccccccc
Confidence 36899999999999874
No 165
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=85.00 E-value=0.98 Score=39.01 Aligned_cols=31 Identities=29% Similarity=0.390 Sum_probs=26.7
Q ss_pred cCCCCCCCHHHHHH---hCCCcEEEEcCcH-HHHH
Q 029420 136 GANRFYPGIPDALK---FASSRIYIVTTKA-VSQM 166 (193)
Q Consensus 136 ~~~~lypGV~e~L~---~~gi~laVvTnK~-~a~~ 166 (193)
...++|||+.+.|+ ++|+++..+||.+ .+..
T Consensus 21 ~G~~~ipga~e~l~~L~~~g~~~iflTNn~~~s~~ 55 (269)
T COG0647 21 RGNEAIPGAAEALKRLKAAGKPVIFLTNNSTRSRE 55 (269)
T ss_pred eCCccCchHHHHHHHHHHcCCeEEEEeCCCCCCHH
Confidence 34689999999999 9999999999999 4444
No 166
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=84.91 E-value=0.81 Score=43.19 Aligned_cols=38 Identities=8% Similarity=0.084 Sum_probs=33.4
Q ss_pred CCCCCCCHHHHHH---hCCCcEEEEcCcH--HHHHHHHHHhHH
Q 029420 137 ANRFYPGIPDALK---FASSRIYIVTTKA--VSQMLYYESLQE 174 (193)
Q Consensus 137 ~~~lypGV~e~L~---~~gi~laVvTnK~--~a~~lL~~~~~~ 174 (193)
..+++||+.++|+ ++|++++|+||++ .++.++++++-+
T Consensus 403 ~d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~~ia~~lgi~ 445 (562)
T TIGR01511 403 EDQLRPEAKEVIQALKRRGIEPVMLTGDNRKTAKAVAKELGIN 445 (562)
T ss_pred cccccHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHcCCc
Confidence 4578999999999 8999999999999 999999987543
No 167
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=83.66 E-value=0.59 Score=36.93 Aligned_cols=16 Identities=25% Similarity=0.370 Sum_probs=14.0
Q ss_pred ceEEEecCcccccChH
Q 029420 3 DLYALDFDGVLCDSCG 18 (193)
Q Consensus 3 ~~vlFDlDGTLvDS~~ 18 (193)
++++||.||||.++.+
T Consensus 2 ~~~~~d~dg~l~~~~~ 17 (161)
T TIGR01261 2 KILFIDRDGTLIEEPP 17 (161)
T ss_pred CEEEEeCCCCccccCC
Confidence 6899999999999654
No 168
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=83.04 E-value=0.92 Score=37.55 Aligned_cols=26 Identities=19% Similarity=0.231 Sum_probs=13.0
Q ss_pred EEecCcccccChH-----HHHHHHHHHHHHh
Q 029420 6 ALDFDGVLCDSCG-----ESSLSAVKAAKVR 31 (193)
Q Consensus 6 lFDlDGTLvDS~~-----di~~a~~~al~~l 31 (193)
+||+||||++-.+ -....+..+|++|
T Consensus 1 ~lDyDGTL~p~~~~p~~~~~~~~~~~~L~~L 31 (235)
T PF02358_consen 1 FLDYDGTLAPIVDDPDAAVPPPELRELLRAL 31 (235)
T ss_dssp EEE-TTTSS---S-GGG----HHHHHHHHHH
T ss_pred CcccCCccCCCCCCccccCCCHHHHHHHHHH
Confidence 6999999998775 2223444555555
No 169
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=82.84 E-value=1.2 Score=35.55 Aligned_cols=24 Identities=17% Similarity=0.123 Sum_probs=21.6
Q ss_pred HhCCCcEEEEcCcH--HHHHHHHHHh
Q 029420 149 KFASSRIYIVTTKA--VSQMLYYESL 172 (193)
Q Consensus 149 ~~~gi~laVvTnK~--~a~~lL~~~~ 172 (193)
+++|++++|+|||+ .++.+++++.
T Consensus 47 ~~~Gi~laIiT~k~~~~~~~~l~~lg 72 (169)
T TIGR02726 47 QLCGIDVAIITSKKSGAVRHRAEELK 72 (169)
T ss_pred HHCCCEEEEEECCCcHHHHHHHHHCC
Confidence 38999999999999 8999999983
No 170
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=82.23 E-value=0.82 Score=36.03 Aligned_cols=15 Identities=33% Similarity=0.445 Sum_probs=13.5
Q ss_pred ceEEEecCcccccCh
Q 029420 3 DLYALDFDGVLCDSC 17 (193)
Q Consensus 3 ~~vlFDlDGTLvDS~ 17 (193)
+.+++|||+|||-|-
T Consensus 2 ~~lvlDLDeTLi~~~ 16 (162)
T TIGR02251 2 KTLVLDLDETLVHST 16 (162)
T ss_pred cEEEEcCCCCcCCCC
Confidence 579999999999994
No 171
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=81.70 E-value=0.9 Score=35.86 Aligned_cols=24 Identities=42% Similarity=0.706 Sum_probs=20.0
Q ss_pred CCCCCHHHHHH---hCCCcEEEEcCcH
Q 029420 139 RFYPGIPDALK---FASSRIYIVTTKA 162 (193)
Q Consensus 139 ~lypGV~e~L~---~~gi~laVvTnK~ 162 (193)
-++|||.+.|+ +.|+.++|+||..
T Consensus 29 ~~~~~v~~~L~~l~~~Gy~IvIvTNQ~ 55 (159)
T PF08645_consen 29 FFPPGVPEALRELHKKGYKIVIVTNQS 55 (159)
T ss_dssp EC-TTHHHHHHHHHHTTEEEEEEEE-C
T ss_pred hcchhHHHHHHHHHhcCCeEEEEeCcc
Confidence 35579999999 9999999999997
No 172
>COG4996 Predicted phosphatase [General function prediction only]
Probab=81.60 E-value=0.77 Score=35.96 Aligned_cols=16 Identities=25% Similarity=0.262 Sum_probs=13.3
Q ss_pred ceEEEecCcccccChH
Q 029420 3 DLYALDFDGVLCDSCG 18 (193)
Q Consensus 3 ~~vlFDlDGTLvDS~~ 18 (193)
++|+||+||||-|-..
T Consensus 1 ~~i~~d~d~t~wdhh~ 16 (164)
T COG4996 1 RAIVFDADKTLWDHHN 16 (164)
T ss_pred CcEEEeCCCccccccc
Confidence 4799999999998643
No 173
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=81.42 E-value=8.1 Score=32.75 Aligned_cols=43 Identities=12% Similarity=0.050 Sum_probs=31.0
Q ss_pred CCCCCCHHHHHHhCCC-cEEEEcCcH--HHHHHHHHH-hHHHHHHHH
Q 029420 138 NRFYPGIPDALKFASS-RIYIVTTKA--VSQMLYYES-LQELQYHLT 180 (193)
Q Consensus 138 ~~lypGV~e~L~~~gi-~laVvTnK~--~a~~lL~~~-~~~~~~~~~ 180 (193)
-+|=|-.+++|-.-.. +..|-||-+ -|.++|+.+ .-+|++-++
T Consensus 99 LkPD~~LRnlLL~l~~r~k~~FTNa~k~HA~r~Lk~LGieDcFegii 145 (244)
T KOG3109|consen 99 LKPDPVLRNLLLSLKKRRKWIFTNAYKVHAIRILKKLGIEDCFEGII 145 (244)
T ss_pred cCCCHHHHHHHHhCccccEEEecCCcHHHHHHHHHHhChHHhcccee
Confidence 4566667777762222 278999999 999999999 667776654
No 174
>PLN02580 trehalose-phosphatase
Probab=81.02 E-value=0.83 Score=41.42 Aligned_cols=15 Identities=33% Similarity=0.432 Sum_probs=11.8
Q ss_pred ceEEEecCcccccCh
Q 029420 3 DLYALDFDGVLCDSC 17 (193)
Q Consensus 3 ~~vlFDlDGTLvDS~ 17 (193)
.+++||+||||+.=.
T Consensus 120 ~~LfLDyDGTLaPIv 134 (384)
T PLN02580 120 IALFLDYDGTLSPIV 134 (384)
T ss_pred eEEEEecCCccCCCC
Confidence 468889999997544
No 175
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=79.86 E-value=1.2 Score=38.57 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=17.9
Q ss_pred ceEEEecCcccccChHHHHHHH
Q 029420 3 DLYALDFDGVLCDSCGESSLSA 24 (193)
Q Consensus 3 ~~vlFDlDGTLvDS~~di~~a~ 24 (193)
+.++||+||||.++-.-|-.+.
T Consensus 9 ~~~l~DlDGvl~~G~~~ipga~ 30 (269)
T COG0647 9 DGFLFDLDGVLYRGNEAIPGAA 30 (269)
T ss_pred CEEEEcCcCceEeCCccCchHH
Confidence 7899999999999876665544
No 176
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=78.40 E-value=1 Score=40.96 Aligned_cols=20 Identities=25% Similarity=0.534 Sum_probs=16.8
Q ss_pred ceEEEecCcccccChHHHHH
Q 029420 3 DLYALDFDGVLCDSCGESSL 22 (193)
Q Consensus 3 ~~vlFDlDGTLvDS~~di~~ 22 (193)
|.+.||+||||+|+.+....
T Consensus 76 K~i~FD~dgtlI~t~sg~vf 95 (422)
T KOG2134|consen 76 KIIMFDYDGTLIDTKSGKVF 95 (422)
T ss_pred ceEEEecCCceeecCCccee
Confidence 67999999999999985443
No 177
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=77.44 E-value=2.5 Score=35.71 Aligned_cols=35 Identities=23% Similarity=0.076 Sum_probs=29.2
Q ss_pred CCCCCCHHHHHH---hCCCcEEEEcCcH--HHHHHHHHHh
Q 029420 138 NRFYPGIPDALK---FASSRIYIVTTKA--VSQMLYYESL 172 (193)
Q Consensus 138 ~~lypGV~e~L~---~~gi~laVvTnK~--~a~~lL~~~~ 172 (193)
..++|++.++|+ ++|++++|||+|+ .+..+++.+.
T Consensus 20 ~~~~~~~~~ai~~l~~~Gi~~~iaTgR~~~~~~~~~~~l~ 59 (273)
T PRK00192 20 TYSYEPAKPALKALKEKGIPVIPCTSKTAAEVEVLRKELG 59 (273)
T ss_pred CcCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcC
Confidence 457788888888 8999999999999 7777777763
No 178
>PRK10444 UMP phosphatase; Provisional
Probab=76.78 E-value=3 Score=35.21 Aligned_cols=33 Identities=18% Similarity=0.117 Sum_probs=27.9
Q ss_pred CCCCCHHHHHH---hCCCcEEEEcCcH--HHHHHHHHH
Q 029420 139 RFYPGIPDALK---FASSRIYIVTTKA--VSQMLYYES 171 (193)
Q Consensus 139 ~lypGV~e~L~---~~gi~laVvTnK~--~a~~lL~~~ 171 (193)
+++||+.+.|+ ++|+++.++||.+ ....+.+++
T Consensus 17 ~~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l 54 (248)
T PRK10444 17 VAVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRF 54 (248)
T ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHH
Confidence 78999999998 8999999999999 555555554
No 179
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=76.74 E-value=2.4 Score=35.20 Aligned_cols=31 Identities=10% Similarity=0.001 Sum_probs=24.2
Q ss_pred CCCCHHHHHH---hCCCcEEEEcCcH--HHHHHHHHH
Q 029420 140 FYPGIPDALK---FASSRIYIVTTKA--VSQMLYYES 171 (193)
Q Consensus 140 lypGV~e~L~---~~gi~laVvTnK~--~a~~lL~~~ 171 (193)
-|||+.++|+ ++|+++ |+|||+ .+...+.++
T Consensus 139 ~~~~~~~~l~~l~~~g~~~-i~tN~d~~~~~~~~~~~ 174 (242)
T TIGR01459 139 DLDEFDELFAPIVARKIPN-ICANPDRGINQHGIYRY 174 (242)
T ss_pred CHHHHHHHHHHHHhCCCcE-EEECCCEeccCCCceEe
Confidence 3899999998 789997 999999 555555544
No 180
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=76.07 E-value=3.5 Score=34.76 Aligned_cols=23 Identities=35% Similarity=0.427 Sum_probs=21.8
Q ss_pred CCCCHHHHHH---hCCCcEEEEcCcH
Q 029420 140 FYPGIPDALK---FASSRIYIVTTKA 162 (193)
Q Consensus 140 lypGV~e~L~---~~gi~laVvTnK~ 162 (193)
++||+.+.|+ ++|++++++||.+
T Consensus 22 ~~~~a~~al~~l~~~G~~~~~~Tn~~ 47 (257)
T TIGR01458 22 AVPGSQEAVKRLRGASVKVRFVTNTT 47 (257)
T ss_pred cCCCHHHHHHHHHHCCCeEEEEECCC
Confidence 8999999999 8999999999988
No 181
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=75.88 E-value=3.5 Score=35.02 Aligned_cols=25 Identities=32% Similarity=0.523 Sum_probs=22.4
Q ss_pred CCCCCCHHHHHH---hCCCcEEEEcCcH
Q 029420 138 NRFYPGIPDALK---FASSRIYIVTTKA 162 (193)
Q Consensus 138 ~~lypGV~e~L~---~~gi~laVvTnK~ 162 (193)
.++|||+.++|+ ++|++++++||.+
T Consensus 17 ~~~~~ga~e~l~~L~~~g~~~~~~Tnns 44 (279)
T TIGR01452 17 ERVVPGAPELLDRLARAGKAALFVTNNS 44 (279)
T ss_pred CeeCcCHHHHHHHHHHCCCeEEEEeCCC
Confidence 568999999998 8999999999955
No 182
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=75.22 E-value=2.1 Score=33.82 Aligned_cols=15 Identities=27% Similarity=0.144 Sum_probs=12.8
Q ss_pred CceEEEecCcccccC
Q 029420 2 ADLYALDFDGVLCDS 16 (193)
Q Consensus 2 ~~~vlFDlDGTLvDS 16 (193)
.++|++|+||||.+.
T Consensus 25 v~~vv~D~Dgtl~~~ 39 (170)
T TIGR01668 25 IKGVVLDKDNTLVYP 39 (170)
T ss_pred CCEEEEecCCccccC
Confidence 378999999999953
No 183
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=74.64 E-value=1.8 Score=36.83 Aligned_cols=15 Identities=40% Similarity=0.448 Sum_probs=13.7
Q ss_pred CCceEEEecCccccc
Q 029420 1 MADLYALDFDGVLCD 15 (193)
Q Consensus 1 ~~~~vlFDlDGTLvD 15 (193)
|..+|.-|+||||++
T Consensus 6 ~~~lIFtDlD~TLl~ 20 (274)
T COG3769 6 MPLLIFTDLDGTLLP 20 (274)
T ss_pred cceEEEEcccCcccC
Confidence 568899999999999
No 184
>PRK06769 hypothetical protein; Validated
Probab=73.30 E-value=2 Score=34.07 Aligned_cols=11 Identities=27% Similarity=0.459 Sum_probs=10.6
Q ss_pred ceEEEecCccc
Q 029420 3 DLYALDFDGVL 13 (193)
Q Consensus 3 ~~vlFDlDGTL 13 (193)
++++||.||||
T Consensus 5 ~~~~~d~d~~~ 15 (173)
T PRK06769 5 QAIFIDRDGTI 15 (173)
T ss_pred cEEEEeCCCcc
Confidence 79999999999
No 185
>PLN02382 probable sucrose-phosphatase
Probab=72.47 E-value=2 Score=39.07 Aligned_cols=14 Identities=21% Similarity=0.385 Sum_probs=11.5
Q ss_pred eEEEecCcccccCh
Q 029420 4 LYALDFDGVLCDSC 17 (193)
Q Consensus 4 ~vlFDlDGTLvDS~ 17 (193)
+|+-||||||+|+-
T Consensus 11 lI~sDLDGTLL~~~ 24 (413)
T PLN02382 11 MIVSDLDHTMVDHH 24 (413)
T ss_pred EEEEcCCCcCcCCC
Confidence 46669999999873
No 186
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=71.59 E-value=5.3 Score=32.10 Aligned_cols=30 Identities=20% Similarity=0.039 Sum_probs=19.7
Q ss_pred CceEEEecCcccc----cCh-HHHHHHHHHHHHHh
Q 029420 2 ADLYALDFDGVLC----DSC-GESSLSAVKAAKVR 31 (193)
Q Consensus 2 ~~~vlFDlDGTLv----DS~-~di~~a~~~al~~l 31 (193)
.|+++||+|.||+ +.+ +++....+...+..
T Consensus 41 ik~li~DkDNTL~~~~~~~i~~~~~~~~~~l~~~~ 75 (168)
T PF09419_consen 41 IKALIFDKDNTLTPPYEDEIPPEYAEWLNELKKQF 75 (168)
T ss_pred ceEEEEcCCCCCCCCCcCcCCHHHHHHHHHHHHHC
Confidence 3789999999998 233 55555554444444
No 187
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=70.87 E-value=2.5 Score=33.23 Aligned_cols=21 Identities=29% Similarity=0.360 Sum_probs=16.7
Q ss_pred ceEEEecCcccccChHHHHHH
Q 029420 3 DLYALDFDGVLCDSCGESSLS 23 (193)
Q Consensus 3 ~~vlFDlDGTLvDS~~di~~a 23 (193)
..+++|||.||+.|..+-...
T Consensus 7 l~LVLDLDeTLihs~~~~~~~ 27 (156)
T TIGR02250 7 LHLVLDLDQTLIHTTKDPTLS 27 (156)
T ss_pred eEEEEeCCCCcccccccCccc
Confidence 468999999999998764433
No 188
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=70.18 E-value=5 Score=32.00 Aligned_cols=25 Identities=12% Similarity=0.004 Sum_probs=21.7
Q ss_pred HHhCCCcEEEEcCcH--HHHHHHHHHh
Q 029420 148 LKFASSRIYIVTTKA--VSQMLYYESL 172 (193)
Q Consensus 148 L~~~gi~laVvTnK~--~a~~lL~~~~ 172 (193)
|+++|++++|+||++ .++.+++++.
T Consensus 60 L~~~Gi~v~I~T~~~~~~v~~~l~~lg 86 (183)
T PRK09484 60 LLTSGIEVAIITGRKSKLVEDRMTTLG 86 (183)
T ss_pred HHHCCCEEEEEeCCCcHHHHHHHHHcC
Confidence 348999999999999 8899999874
No 189
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=70.07 E-value=2.1 Score=42.27 Aligned_cols=16 Identities=31% Similarity=0.472 Sum_probs=13.4
Q ss_pred ceEEEecCcccccChH
Q 029420 3 DLYALDFDGVLCDSCG 18 (193)
Q Consensus 3 ~~vlFDlDGTLvDS~~ 18 (193)
++++||+||||+.-.+
T Consensus 508 rll~LDyDGTL~~~~~ 523 (797)
T PLN03063 508 RLLILGFYGTLTEPRN 523 (797)
T ss_pred eEEEEecCccccCCCC
Confidence 5899999999997544
No 190
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=69.59 E-value=2.6 Score=36.73 Aligned_cols=16 Identities=25% Similarity=0.428 Sum_probs=14.4
Q ss_pred CceEEEecCcccccCh
Q 029420 2 ADLYALDFDGVLCDSC 17 (193)
Q Consensus 2 ~~~vlFDlDGTLvDS~ 17 (193)
.|+|+||||+||.++.
T Consensus 3 ~k~~v~DlDnTlw~gv 18 (320)
T TIGR01686 3 LKVLVLDLDNTLWGGV 18 (320)
T ss_pred eEEEEEcCCCCCCCCE
Confidence 5899999999998885
No 191
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=68.27 E-value=2.4 Score=42.71 Aligned_cols=15 Identities=27% Similarity=0.519 Sum_probs=12.7
Q ss_pred ceEEEecCcccccCh
Q 029420 3 DLYALDFDGVLCDSC 17 (193)
Q Consensus 3 ~~vlFDlDGTLvDS~ 17 (193)
++++||+||||+.-.
T Consensus 592 RLlfLDyDGTLap~~ 606 (934)
T PLN03064 592 RLLILGFNATLTEPV 606 (934)
T ss_pred eEEEEecCceeccCC
Confidence 589999999999743
No 192
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=67.22 E-value=3.6 Score=36.88 Aligned_cols=17 Identities=29% Similarity=0.460 Sum_probs=15.3
Q ss_pred CCceEEEecCcccccCh
Q 029420 1 MADLYALDFDGVLCDSC 17 (193)
Q Consensus 1 ~~~~vlFDlDGTLvDS~ 17 (193)
|.++++||.||||+...
T Consensus 1 ~~k~l~lDrDgtl~~~~ 17 (354)
T PRK05446 1 MQKILFIDRDGTLIEEP 17 (354)
T ss_pred CCcEEEEeCCCCccCCC
Confidence 67999999999999974
No 193
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=66.29 E-value=6.6 Score=32.90 Aligned_cols=35 Identities=9% Similarity=-0.043 Sum_probs=26.8
Q ss_pred CCCCCCHHHHHH---hCCCcEEEEcCcH-----HHHHHHHHHh
Q 029420 138 NRFYPGIPDALK---FASSRIYIVTTKA-----VSQMLYYESL 172 (193)
Q Consensus 138 ~~lypGV~e~L~---~~gi~laVvTnK~-----~a~~lL~~~~ 172 (193)
.+++||+.+.|+ ++|+++.++||.. .....|+.++
T Consensus 16 ~~~i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l~~~g 58 (249)
T TIGR01457 16 KERIPEAETFVHELQKRDIPYLFVTNNSTRTPESVAEMLASFD 58 (249)
T ss_pred CeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcC
Confidence 468899999998 8999999999844 4444555553
No 194
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=65.82 E-value=3.3 Score=33.00 Aligned_cols=13 Identities=31% Similarity=0.532 Sum_probs=11.7
Q ss_pred eEEEecCcccccC
Q 029420 4 LYALDFDGVLCDS 16 (193)
Q Consensus 4 ~vlFDlDGTLvDS 16 (193)
+|++|.||||.-|
T Consensus 1 VVvsDIDGTiT~S 13 (157)
T PF08235_consen 1 VVVSDIDGTITKS 13 (157)
T ss_pred CEEEeccCCcCcc
Confidence 4899999999877
No 195
>PRK10671 copA copper exporting ATPase; Provisional
Probab=63.80 E-value=6.9 Score=38.70 Aligned_cols=37 Identities=16% Similarity=0.122 Sum_probs=32.2
Q ss_pred CCCCCCCHHHHHH---hCCCcEEEEcCcH--HHHHHHHHHhH
Q 029420 137 ANRFYPGIPDALK---FASSRIYIVTTKA--VSQMLYYESLQ 173 (193)
Q Consensus 137 ~~~lypGV~e~L~---~~gi~laVvTnK~--~a~~lL~~~~~ 173 (193)
..+++||+.+.|+ +.|++++++|+++ .++.++++++-
T Consensus 648 ~d~~r~~a~~~i~~L~~~gi~v~~~Tgd~~~~a~~ia~~lgi 689 (834)
T PRK10671 648 RDPLRSDSVAALQRLHKAGYRLVMLTGDNPTTANAIAKEAGI 689 (834)
T ss_pred cCcchhhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCC
Confidence 3478999999999 8999999999998 88889888743
No 196
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=63.33 E-value=8.5 Score=31.06 Aligned_cols=31 Identities=16% Similarity=-0.008 Sum_probs=24.1
Q ss_pred CCHHHHHH---hCCCcEEEEcCcH--HHHHHHHHHh
Q 029420 142 PGIPDALK---FASSRIYIVTTKA--VSQMLYYESL 172 (193)
Q Consensus 142 pGV~e~L~---~~gi~laVvTnK~--~a~~lL~~~~ 172 (193)
|...+.|+ ++|+++++|||++ .++.+++.+.
T Consensus 19 ~~~~~~l~~l~~~gi~~~i~TgR~~~~~~~~~~~l~ 54 (221)
T TIGR02463 19 QPAAPWLTRLQEAGIPVILCTSKTAAEVEYLQKALG 54 (221)
T ss_pred HHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcC
Confidence 33566666 8899999999999 7777877764
No 197
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=63.26 E-value=6.6 Score=39.16 Aligned_cols=35 Identities=17% Similarity=0.206 Sum_probs=31.8
Q ss_pred CCCCCHHHHHH---hCCCcEEEEcCcH--HHHHHHHHHhH
Q 029420 139 RFYPGIPDALK---FASSRIYIVTTKA--VSQMLYYESLQ 173 (193)
Q Consensus 139 ~lypGV~e~L~---~~gi~laVvTnK~--~a~~lL~~~~~ 173 (193)
+++||+.+.++ ++|+++.++|++. .|..+.+.++-
T Consensus 528 p~r~~~~~~i~~l~~~Gi~v~miTGD~~~tA~~ia~~~Gi 567 (884)
T TIGR01522 528 PPRPGVKEAVTTLITGGVRIIMITGDSQETAVSIARRLGM 567 (884)
T ss_pred cchhHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCC
Confidence 78999999999 8999999999998 99999888853
No 198
>COG5663 Uncharacterized conserved protein [Function unknown]
Probab=62.80 E-value=3.4 Score=33.60 Aligned_cols=13 Identities=31% Similarity=0.621 Sum_probs=11.7
Q ss_pred EEEecCcccccCh
Q 029420 5 YALDFDGVLCDSC 17 (193)
Q Consensus 5 vlFDlDGTLvDS~ 17 (193)
++.|.||||+|-.
T Consensus 9 ~ciDIDGtit~~~ 21 (194)
T COG5663 9 CCIDIDGTITDDP 21 (194)
T ss_pred eeeccCCceecCc
Confidence 6899999999975
No 199
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=61.28 E-value=7.3 Score=29.87 Aligned_cols=36 Identities=14% Similarity=0.167 Sum_probs=29.2
Q ss_pred CCCCCCHHHHHH--hCCCcEEEEcCcH--HHHHHHHHHhH
Q 029420 138 NRFYPGIPDALK--FASSRIYIVTTKA--VSQMLYYESLQ 173 (193)
Q Consensus 138 ~~lypGV~e~L~--~~gi~laVvTnK~--~a~~lL~~~~~ 173 (193)
..+-||+.++|+ ...+.++|.|+-. .|+.+++.+.+
T Consensus 35 v~~RP~l~~FL~~l~~~~ev~i~T~~~~~ya~~v~~~ldp 74 (159)
T PF03031_consen 35 VKLRPGLDEFLEELSKHYEVVIWTSASEEYAEPVLDALDP 74 (159)
T ss_dssp EEE-TTHHHHHHHHHHHCEEEEE-SS-HHHHHHHHHHHTT
T ss_pred EeeCchHHHHHHHHHHhceEEEEEeehhhhhhHHHHhhhh
Confidence 356799999999 7779999999988 99999999876
No 200
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=61.20 E-value=3.2 Score=32.93 Aligned_cols=30 Identities=27% Similarity=0.131 Sum_probs=25.5
Q ss_pred CCceEEEecCcccccChHHHHHHHHHHHHHh
Q 029420 1 MADLYALDFDGVLCDSCGESSLSAVKAAKVR 31 (193)
Q Consensus 1 ~~~~vlFDlDGTLvDS~~di~~a~~~al~~l 31 (193)
|.+.|+.|+|-||.|...|.....| .....
T Consensus 2 ~kk~iaIDmD~vLadll~ewv~~~N-~y~D~ 31 (180)
T COG4502 2 NKKTIAIDMDTVLADLLREWVKRYN-IYKDK 31 (180)
T ss_pred CCceEEeeHHHHHHHHHHHHHHHhh-hcccc
Confidence 4589999999999999999999998 44444
No 201
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=60.46 E-value=18 Score=31.20 Aligned_cols=26 Identities=15% Similarity=0.423 Sum_probs=24.0
Q ss_pred CCCCCCCHHHHHH---hCCCcEEEEcCcH
Q 029420 137 ANRFYPGIPDALK---FASSRIYIVTTKA 162 (193)
Q Consensus 137 ~~~lypGV~e~L~---~~gi~laVvTnK~ 162 (193)
.+++-||+.|.|. +.|.++.-+||..
T Consensus 120 ~sk~vpGA~eFl~Yvn~~Gg~ifyiSNR~ 148 (274)
T COG2503 120 KSKAVPGAVEFLNYVNSNGGKIFYISNRD 148 (274)
T ss_pred ccccCccHHHHHHHHHhcCcEEEEEeccc
Confidence 5789999999999 9999999999987
No 202
>PRK11426 hypothetical protein; Provisional
Probab=58.64 E-value=13 Score=28.79 Aligned_cols=57 Identities=11% Similarity=0.082 Sum_probs=37.7
Q ss_pred hhccchhhccHHHHHHHHHHhhhcccccccccccccccHHHHhhhhcc-hhhhhhhhcCCCHHHHHHHHHHHHHHHHHh
Q 029420 52 HILRPVVETGYENLLLVRLLLEIRMPSIRKSSVSEGLTVEGILENWSK-IKPVIMEDWSENRDALVDLFGKVRDEWMDK 129 (193)
Q Consensus 52 ~~vr~~Ig~G~~~ll~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~g~~~e~~~~~~~~~r~~y~~~ 129 (193)
+.+++|||+|.++. .++.+.+.+.+.+ ..+++..+.|++++++...+.++-...+++
T Consensus 46 d~v~SWvg~g~~N~---------------------pIs~~ql~~~lG~d~i~~lA~q~Gl~~~~~~~~LA~~LP~~VDk 103 (132)
T PRK11426 46 AILSTWLSNQQGNQ---------------------SVSGEQLESALGTNAVSDLGQKLGVDTSTASSLLAEQLPKIIDA 103 (132)
T ss_pred hHHHHhhcCCCCCC---------------------CCCHHHHHHHhChHHHHHHHHHHCcCHHHHHHHHHHHhHHHHhc
Confidence 56899999864221 1123333334433 456667778999999888888888887765
No 203
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=57.92 E-value=20 Score=28.06 Aligned_cols=25 Identities=16% Similarity=0.332 Sum_probs=22.6
Q ss_pred CCCCCCHHHHHH---hCCCcEEEEcCcH
Q 029420 138 NRFYPGIPDALK---FASSRIYIVTTKA 162 (193)
Q Consensus 138 ~~lypGV~e~L~---~~gi~laVvTnK~ 162 (193)
....||+.++++ ++|+++.++|+.+
T Consensus 26 ~~~~~~~~~a~~~l~~~G~~ivy~TGRp 53 (157)
T smart00775 26 DWTHPGVAKLYRDIQNNGYKILYLTARP 53 (157)
T ss_pred CcCCHHHHHHHHHHHHcCCeEEEEcCCc
Confidence 356799999999 8999999999999
No 204
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=56.80 E-value=11 Score=37.00 Aligned_cols=37 Identities=8% Similarity=0.003 Sum_probs=33.0
Q ss_pred CCCCCCHHHHHH---hCCCcEEEEcCcH--HHHHHHHHHhHH
Q 029420 138 NRFYPGIPDALK---FASSRIYIVTTKA--VSQMLYYESLQE 174 (193)
Q Consensus 138 ~~lypGV~e~L~---~~gi~laVvTnK~--~a~~lL~~~~~~ 174 (193)
.+++||+.++++ ++|++++++|++. .++.+.++++.+
T Consensus 567 d~~r~~a~~~i~~L~~~gi~~~llTGd~~~~a~~ia~~lgi~ 608 (741)
T PRK11033 567 DTLRADARQAISELKALGIKGVMLTGDNPRAAAAIAGELGID 608 (741)
T ss_pred cCCchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCC
Confidence 478999999999 8999999999999 999999988643
No 205
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=55.57 E-value=18 Score=29.89 Aligned_cols=26 Identities=19% Similarity=0.387 Sum_probs=22.5
Q ss_pred CCCCCCCHHHHHH---hCCCcEEEEcCcH
Q 029420 137 ANRFYPGIPDALK---FASSRIYIVTTKA 162 (193)
Q Consensus 137 ~~~lypGV~e~L~---~~gi~laVvTnK~ 162 (193)
...+|||+.+.|+ ++|+++.++||-+
T Consensus 12 ~~~~~~~a~e~i~~l~~~g~~~~~~tN~~ 40 (236)
T TIGR01460 12 GHKPIPGAAEALNRLRAKGKPVVFLTNNS 40 (236)
T ss_pred CCccCcCHHHHHHHHHHCCCeEEEEECCC
Confidence 3578999999998 7899999999755
No 206
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=55.26 E-value=7.2 Score=31.77 Aligned_cols=17 Identities=29% Similarity=0.354 Sum_probs=14.7
Q ss_pred ceEEEecCcccccChHH
Q 029420 3 DLYALDFDGVLCDSCGE 19 (193)
Q Consensus 3 ~~vlFDlDGTLvDS~~d 19 (193)
++++||-||||..--++
T Consensus 6 k~lflDRDGtin~d~~~ 22 (181)
T COG0241 6 KALFLDRDGTINIDKGD 22 (181)
T ss_pred cEEEEcCCCceecCCCc
Confidence 69999999999877774
No 207
>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]
Probab=53.24 E-value=18 Score=28.14 Aligned_cols=34 Identities=12% Similarity=0.029 Sum_probs=29.1
Q ss_pred CCCCCCHHHHHH---hCCCcEEEEcCcH---HHHHHHHHH
Q 029420 138 NRFYPGIPDALK---FASSRIYIVTTKA---VSQMLYYES 171 (193)
Q Consensus 138 ~~lypGV~e~L~---~~gi~laVvTnK~---~a~~lL~~~ 171 (193)
-..||.+.-.|. +.|++++++++-+ .|...|+.|
T Consensus 43 ~~fY~Di~rIL~dLk~~GVtl~~ASRt~ap~iA~q~L~~f 82 (144)
T KOG4549|consen 43 MIFYDDIRRILVDLKKLGVTLIHASRTMAPQIASQGLETF 82 (144)
T ss_pred eeeccchhHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHh
Confidence 457888888777 9999999999987 888888877
No 208
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=52.72 E-value=19 Score=29.73 Aligned_cols=34 Identities=18% Similarity=-0.008 Sum_probs=26.6
Q ss_pred CCCCCCHHHHHH---hCCCcEEEEcCcH--HHHHHHHHH
Q 029420 138 NRFYPGIPDALK---FASSRIYIVTTKA--VSQMLYYES 171 (193)
Q Consensus 138 ~~lypGV~e~L~---~~gi~laVvTnK~--~a~~lL~~~ 171 (193)
....|+..+.|+ ++|+++.++|+++ .+..+++.+
T Consensus 14 ~~~~~~~~~ai~~l~~~G~~~vi~TgR~~~~~~~~~~~l 52 (225)
T TIGR02461 14 GYEPGPAREALEELKDLGFPIVFVSSKTRAEQEYYREEL 52 (225)
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHc
Confidence 346778888888 8899999999998 555566554
No 209
>COG5083 SMP2 Uncharacterized protein involved in plasmid maintenance [General function prediction only]
Probab=52.60 E-value=7.7 Score=36.08 Aligned_cols=15 Identities=27% Similarity=0.485 Sum_probs=13.0
Q ss_pred CceEEEecCcccccC
Q 029420 2 ADLYALDFDGVLCDS 16 (193)
Q Consensus 2 ~~~vlFDlDGTLvDS 16 (193)
.+.|++|.||||.-|
T Consensus 375 ~kiVVsDiDGTITkS 389 (580)
T COG5083 375 KKIVVSDIDGTITKS 389 (580)
T ss_pred CcEEEEecCCcEEeh
Confidence 378999999999865
No 210
>KOG3189 consensus Phosphomannomutase [Lipid transport and metabolism]
Probab=51.34 E-value=11 Score=31.59 Aligned_cols=28 Identities=18% Similarity=0.197 Sum_probs=20.5
Q ss_pred eEEEecCcccccChHHHHHHHHHHHHHh
Q 029420 4 LYALDFDGVLCDSCGESSLSAVKAAKVR 31 (193)
Q Consensus 4 ~vlFDlDGTLvDS~~di~~a~~~al~~l 31 (193)
+++||.||||.-+...+..-+...++++
T Consensus 13 l~lfdvdgtLt~~r~~~~~e~~~~l~~l 40 (252)
T KOG3189|consen 13 LCLFDVDGTLTPPRQKVTPEMLEFLQKL 40 (252)
T ss_pred EEEEecCCccccccccCCHHHHHHHHHH
Confidence 7899999999987765555555555554
No 211
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=50.61 E-value=38 Score=29.76 Aligned_cols=26 Identities=19% Similarity=0.448 Sum_probs=22.3
Q ss_pred CCCCCCCHHHHHH---hCCCcEEEEcCcH
Q 029420 137 ANRFYPGIPDALK---FASSRIYIVTTKA 162 (193)
Q Consensus 137 ~~~lypGV~e~L~---~~gi~laVvTnK~ 162 (193)
+-.+||.+.++++ ++|+.++|.||-.
T Consensus 140 EPlL~p~l~eli~~~k~~Gi~~~L~TNG~ 168 (322)
T PRK13762 140 EPTLYPYLPELIEEFHKRGFTTFLVTNGT 168 (322)
T ss_pred cccchhhHHHHHHHHHHcCCCEEEECCCC
Confidence 4457899999999 8999999999975
No 212
>PTZ00445 p36-lilke protein; Provisional
Probab=50.06 E-value=7 Score=32.84 Aligned_cols=14 Identities=29% Similarity=0.354 Sum_probs=12.9
Q ss_pred CceEEEecCccccc
Q 029420 2 ADLYALDFDGVLCD 15 (193)
Q Consensus 2 ~~~vlFDlDGTLvD 15 (193)
.|+|++|||=||++
T Consensus 43 Ik~Va~D~DnTlI~ 56 (219)
T PTZ00445 43 IKVIASDFDLTMIT 56 (219)
T ss_pred CeEEEecchhhhhh
Confidence 47999999999999
No 213
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=49.62 E-value=10 Score=32.12 Aligned_cols=16 Identities=31% Similarity=0.513 Sum_probs=13.6
Q ss_pred ceEEEecCcccccChH
Q 029420 3 DLYALDFDGVLCDSCG 18 (193)
Q Consensus 3 ~~vlFDlDGTLvDS~~ 18 (193)
++++||+||||.+...
T Consensus 159 ~~~~~D~dgtl~~~~~ 174 (300)
T PHA02530 159 KAVIFDIDGTLAKMGG 174 (300)
T ss_pred CEEEEECCCcCcCCCC
Confidence 5899999999998653
No 214
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=48.18 E-value=31 Score=31.96 Aligned_cols=34 Identities=18% Similarity=0.323 Sum_probs=26.5
Q ss_pred CCCHHHHHH---hCCCcEEEEcCcH--HHHHHHHHHhHH
Q 029420 141 YPGIPDALK---FASSRIYIVTTKA--VSQMLYYESLQE 174 (193)
Q Consensus 141 ypGV~e~L~---~~gi~laVvTnK~--~a~~lL~~~~~~ 174 (193)
=|.+..+|+ ++|.++.++||-+ ++..+++.++++
T Consensus 185 ~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~ 223 (448)
T PF05761_consen 185 DPKLPPWLERLRSAGKKLFLITNSPFDYTNAVMSYLLGP 223 (448)
T ss_dssp -CHHHHHHHHHHCCT-EEEEE-SS-HHHHHHHHHHHCGC
T ss_pred CchHHHHHHHHHhcCceEEEecCCCCchhhhhhhhccCC
Confidence 378888888 8999999999999 999999998553
No 215
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=47.53 E-value=11 Score=33.06 Aligned_cols=17 Identities=24% Similarity=0.446 Sum_probs=13.8
Q ss_pred CceEEEecCcccccChH
Q 029420 2 ADLYALDFDGVLCDSCG 18 (193)
Q Consensus 2 ~~~vlFDlDGTLvDS~~ 18 (193)
..+|+||||-||+.+..
T Consensus 122 phVIVfDlD~TLItd~~ 138 (297)
T PF05152_consen 122 PHVIVFDLDSTLITDEG 138 (297)
T ss_pred CcEEEEECCCcccccCC
Confidence 35899999999996643
No 216
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=47.27 E-value=24 Score=28.36 Aligned_cols=33 Identities=12% Similarity=0.057 Sum_probs=24.3
Q ss_pred CCCCCHHHHHH---hCCCcEEEEcCcH--HHHHHHHHH
Q 029420 139 RFYPGIPDALK---FASSRIYIVTTKA--VSQMLYYES 171 (193)
Q Consensus 139 ~lypGV~e~L~---~~gi~laVvTnK~--~a~~lL~~~ 171 (193)
++-|...+.|+ ++|++++++|+.+ .++.+++.+
T Consensus 18 ~i~~~~~~~i~~l~~~g~~~~~~TGR~~~~~~~~~~~l 55 (215)
T TIGR01487 18 MISERAIEAIRKAEKKGIPVSLVTGNTVPFARALAVLI 55 (215)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEEcCCcchhHHHHHHHh
Confidence 45677777777 7888888888888 666665544
No 217
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=46.83 E-value=21 Score=28.37 Aligned_cols=33 Identities=24% Similarity=0.265 Sum_probs=26.9
Q ss_pred CCCCCHHHHHH---hCCCcEEEEcCcH--HHHHHHHHH
Q 029420 139 RFYPGIPDALK---FASSRIYIVTTKA--VSQMLYYES 171 (193)
Q Consensus 139 ~lypGV~e~L~---~~gi~laVvTnK~--~a~~lL~~~ 171 (193)
++-|...+.|+ ++|++++++|+++ .+.++++.+
T Consensus 15 ~i~~~~~~al~~l~~~g~~~~i~TGR~~~~~~~~~~~~ 52 (254)
T PF08282_consen 15 KISPETIEALKELQEKGIKLVIATGRSYSSIKRLLKEL 52 (254)
T ss_dssp SSCHHHHHHHHHHHHTTCEEEEECSSTHHHHHHHHHHT
T ss_pred eeCHHHHHHHHhhcccceEEEEEccCcccccccccccc
Confidence 45577888887 8999999999999 777777755
No 218
>PF08620 RPAP1_C: RPAP1-like, C-terminal; InterPro: IPR013929 Inhibition of RNA polymerase II-associated protein 1 (RPAP1) synthesis in Saccharomyces cerevisiae (Baker's yeast) results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11 []. This entry represents the C-terminal region that contains the motif GLHHH. This region is conserved from yeast to humans.
Probab=46.50 E-value=7.3 Score=27.11 Aligned_cols=10 Identities=50% Similarity=0.823 Sum_probs=8.7
Q ss_pred EEEecCcccc
Q 029420 5 YALDFDGVLC 14 (193)
Q Consensus 5 vlFDlDGTLv 14 (193)
+=|||+|.|+
T Consensus 3 ~RFdf~G~l~ 12 (73)
T PF08620_consen 3 LRFDFDGNLL 12 (73)
T ss_pred ccccCCCCEe
Confidence 3499999999
No 219
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=45.14 E-value=25 Score=30.95 Aligned_cols=35 Identities=14% Similarity=0.048 Sum_probs=27.2
Q ss_pred CCCCCCHHHHHH---hCCCcEEEEcCcH--HHHHHHHHHh
Q 029420 138 NRFYPGIPDALK---FASSRIYIVTTKA--VSQMLYYESL 172 (193)
Q Consensus 138 ~~lypGV~e~L~---~~gi~laVvTnK~--~a~~lL~~~~ 172 (193)
+..++-+.+.|+ ++|++++++|+|. .+..+.+.+.
T Consensus 17 ~~~~~~a~~aL~~Lk~~GI~vVlaTGRt~~ev~~l~~~Lg 56 (302)
T PRK12702 17 FNSYGAARQALAALERRSIPLVLYSLRTRAQLEHLCRQLR 56 (302)
T ss_pred CcCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhC
Confidence 346677788887 8999999999999 6666666653
No 220
>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=43.54 E-value=14 Score=31.86 Aligned_cols=17 Identities=29% Similarity=0.307 Sum_probs=14.5
Q ss_pred CceEEEecCcccccChH
Q 029420 2 ADLYALDFDGVLCDSCG 18 (193)
Q Consensus 2 ~~~vlFDlDGTLvDS~~ 18 (193)
.|.++.|||.||+-|.-
T Consensus 89 kk~lVLDLDeTLvHss~ 105 (262)
T KOG1605|consen 89 RKTLVLDLDETLVHSSL 105 (262)
T ss_pred CceEEEeCCCccccccc
Confidence 47899999999988873
No 221
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=42.80 E-value=14 Score=29.88 Aligned_cols=12 Identities=33% Similarity=0.390 Sum_probs=11.2
Q ss_pred ceEEEecCcccc
Q 029420 3 DLYALDFDGVLC 14 (193)
Q Consensus 3 ~~vlFDlDGTLv 14 (193)
+.|++|||-|||
T Consensus 29 kgvi~DlDNTLv 40 (175)
T COG2179 29 KGVILDLDNTLV 40 (175)
T ss_pred cEEEEeccCcee
Confidence 789999999998
No 222
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=42.23 E-value=24 Score=35.42 Aligned_cols=34 Identities=18% Similarity=0.244 Sum_probs=30.3
Q ss_pred CCCCCHHHHHH---hCCCcEEEEcCcH--HHHHHHHHHh
Q 029420 139 RFYPGIPDALK---FASSRIYIVTTKA--VSQMLYYESL 172 (193)
Q Consensus 139 ~lypGV~e~L~---~~gi~laVvTnK~--~a~~lL~~~~ 172 (193)
+|+||+.+.++ ++|+++.++|+.. .|..+.+..+
T Consensus 537 plr~~v~e~I~~l~~aGI~v~miTGD~~~tA~~ia~~~g 575 (917)
T TIGR01116 537 PPRPEVADAIEKCRTAGIRVIMITGDNKETAEAICRRIG 575 (917)
T ss_pred CCchhHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHcC
Confidence 58999999999 9999999999977 8888888874
No 223
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=41.91 E-value=32 Score=27.66 Aligned_cols=32 Identities=6% Similarity=-0.024 Sum_probs=19.9
Q ss_pred CCCCHHHHHH---hCCCcEEEEcCcH--HHHHHHHHH
Q 029420 140 FYPGIPDALK---FASSRIYIVTTKA--VSQMLYYES 171 (193)
Q Consensus 140 lypGV~e~L~---~~gi~laVvTnK~--~a~~lL~~~ 171 (193)
+-|...+.|+ ++|+++++||+++ .+..+++.+
T Consensus 21 i~~~~~~al~~l~~~G~~~~iaTGR~~~~~~~~~~~l 57 (230)
T PRK01158 21 LSLKAVEAIRKAEKLGIPVILATGNVLCFARAAAKLI 57 (230)
T ss_pred cCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHh
Confidence 3355566665 6777777777777 555555444
No 224
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=40.47 E-value=15 Score=32.87 Aligned_cols=17 Identities=18% Similarity=0.346 Sum_probs=13.8
Q ss_pred CceEEEecCcccccChH
Q 029420 2 ADLYALDFDGVLCDSCG 18 (193)
Q Consensus 2 ~~~vlFDlDGTLvDS~~ 18 (193)
.++|.||+|.||+-=-.
T Consensus 12 i~~~GFDmDyTLa~Y~~ 28 (343)
T TIGR02244 12 IQVFGFDMDYTLAQYKS 28 (343)
T ss_pred CCEEEECccccccccCh
Confidence 37899999999996444
No 225
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=39.83 E-value=37 Score=27.10 Aligned_cols=33 Identities=12% Similarity=0.065 Sum_probs=22.1
Q ss_pred CCCCHHHHHH---hCCCcEEEEcCcH--HHHHHHHHHh
Q 029420 140 FYPGIPDALK---FASSRIYIVTTKA--VSQMLYYESL 172 (193)
Q Consensus 140 lypGV~e~L~---~~gi~laVvTnK~--~a~~lL~~~~ 172 (193)
+-|...+.|+ ++|+++++||+++ .+..+++.+.
T Consensus 16 i~~~~~~al~~l~~~Gi~~~~aTGR~~~~~~~~~~~l~ 53 (225)
T TIGR01482 16 INESALEAIRKAESVGIPVVLVTGNSVQFARALAKLIG 53 (225)
T ss_pred cCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhC
Confidence 4456666666 6888888888887 5555655553
No 226
>PF03387 Herpes_UL46: Herpesvirus UL46 protein; InterPro: IPR005051 The UL46 protein (VP11/12) is produced in the late phase of Herpes virus infection in a manner highly dependent on viral DNA synthesis, and is mainly distributed at the edge of the nucleus in the cytoplasm. It is a tegument phosphoprotein reported to modulate the activity of UL48 (anti-TNF) protein.; GO: 0006355 regulation of transcription, DNA-dependent
Probab=39.36 E-value=2e+02 Score=26.75 Aligned_cols=100 Identities=18% Similarity=0.094 Sum_probs=63.0
Q ss_pred cCcccccChHHHHHHHHHHHHHhcC-CCCCCCCcchhhhhhhhhhhccchhhccHHHHHHHHHHhhhccccccccccccc
Q 029420 9 FDGVLCDSCGESSLSAVKAAKVRWP-GLFDGVDSVIEDWIVDQMHILRPVVETGYENLLLVRLLLEIRMPSIRKSSVSEG 87 (193)
Q Consensus 9 lDGTLvDS~~di~~a~~~al~~l~~-~~~~gl~~~~~~~~~~~~~~vr~~Ig~G~~~ll~~~~l~~~~~~~~~~~~~~~~ 87 (193)
.+|.|+.+-.++..|+..++++.-. ..+.++-... ....++..-.+....-++++++. +
T Consensus 16 ~~gClLptp~~~~~aAv~AL~~~ae~~~p~~L~~~~------R~~~L~~~~~N~VPEs~Iv~~~~--------------~ 75 (444)
T PF03387_consen 16 EKGCLLPTPEDLLEAAVRALRDRAEEVLPAGLFSAD------RASALAARRDNTVPESLIVRCVA--------------G 75 (444)
T ss_pred cCceecCCchhHHHHHHHHHHHHHHhcCCcccccHH------HHHHHhcCCCCCCChHHHHHhhc--------------c
Confidence 4799999999999999999988710 0001222211 12223333334444444456554 3
Q ss_pred ccHHHHhhhhcchhhhhhhhcCCCHHHHHHHHHHHHHHHHH
Q 029420 88 LTVEGILENWSKIKPVIMEDWSENRDALVDLFGKVRDEWMD 128 (193)
Q Consensus 88 ~~~~~~~~~~~~l~~~~~~~~g~~~e~~~~~~~~~r~~y~~ 128 (193)
...++....|.......+++-+++...+.+.+..-+-.|.+
T Consensus 76 D~~~eY~r~Y~~a~k~~l~~~~ls~~~v~r~~~a~YwkyL~ 116 (444)
T PF03387_consen 76 DTNGEYRRHYDAAAKRRLARAGLSRDAVWRAYLASYWKYLQ 116 (444)
T ss_pred CchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 34677888888888888888999999888886544444443
No 227
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=38.03 E-value=39 Score=28.31 Aligned_cols=32 Identities=13% Similarity=-0.029 Sum_probs=20.4
Q ss_pred CCCCHHHHHH---hCCCcEEEEcCcH--HHHHHHHHH
Q 029420 140 FYPGIPDALK---FASSRIYIVTTKA--VSQMLYYES 171 (193)
Q Consensus 140 lypGV~e~L~---~~gi~laVvTnK~--~a~~lL~~~ 171 (193)
+.|-..+.|+ ++|++++++|+++ .+..+++.+
T Consensus 25 i~~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~~~~l 61 (271)
T PRK03669 25 DWQPAAPWLTRLREAQVPVILCSSKTAAEMLPLQQTL 61 (271)
T ss_pred CcHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHh
Confidence 3344555555 6777777777777 555666555
No 228
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=37.99 E-value=40 Score=27.77 Aligned_cols=32 Identities=25% Similarity=0.296 Sum_probs=17.5
Q ss_pred CCCCHHHHHH---hCCCcEEEEcCcH--HHHHHHHHH
Q 029420 140 FYPGIPDALK---FASSRIYIVTTKA--VSQMLYYES 171 (193)
Q Consensus 140 lypGV~e~L~---~~gi~laVvTnK~--~a~~lL~~~ 171 (193)
+-|...+.|+ ++|+++++||+.+ .+..+++.+
T Consensus 21 i~~~~~~ai~~~~~~G~~~~iaTGR~~~~~~~~~~~l 57 (272)
T PRK10530 21 ILPESLEALARAREAGYKVIIVTGRHHVAIHPFYQAL 57 (272)
T ss_pred cCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHhc
Confidence 4444555555 5666666666666 444444444
No 229
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=37.90 E-value=18 Score=25.49 Aligned_cols=15 Identities=27% Similarity=0.257 Sum_probs=12.4
Q ss_pred eEEEecCcccccChH
Q 029420 4 LYALDFDGVLCDSCG 18 (193)
Q Consensus 4 ~vlFDlDGTLvDS~~ 18 (193)
.++++=|||.||+=.
T Consensus 42 ~lvL~eDGTeVddEe 56 (78)
T cd01615 42 TLVLEEDGTEVDDEE 56 (78)
T ss_pred EEEEeCCCcEEccHH
Confidence 478999999998743
No 230
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=37.71 E-value=52 Score=29.03 Aligned_cols=28 Identities=32% Similarity=0.680 Sum_probs=25.1
Q ss_pred cccCCCCCCCHHHHHH---hCCCcEEEEcCcH
Q 029420 134 WIGANRFYPGIPDALK---FASSRIYIVTTKA 162 (193)
Q Consensus 134 ~~~~~~lypGV~e~L~---~~gi~laVvTnK~ 162 (193)
|. ..++-||+.|.|+ +.|..+.++||..
T Consensus 34 W~-g~~~ipGs~e~l~~L~~~gK~i~fvTNNS 64 (306)
T KOG2882|consen 34 WL-GEKPIPGSPEALNLLKSLGKQIIFVTNNS 64 (306)
T ss_pred ee-cCCCCCChHHHHHHHHHcCCcEEEEeCCC
Confidence 55 5689999999999 8999999999988
No 231
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=37.37 E-value=19 Score=25.17 Aligned_cols=15 Identities=27% Similarity=0.381 Sum_probs=12.2
Q ss_pred eEEEecCcccccChH
Q 029420 4 LYALDFDGVLCDSCG 18 (193)
Q Consensus 4 ~vlFDlDGTLvDS~~ 18 (193)
.++++=|||.||+-.
T Consensus 40 ~l~L~eDGT~VddEe 54 (74)
T smart00266 40 TLVLEEDGTIVDDEE 54 (74)
T ss_pred EEEEecCCcEEccHH
Confidence 477899999999843
No 232
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=37.17 E-value=19 Score=25.58 Aligned_cols=15 Identities=33% Similarity=0.350 Sum_probs=12.5
Q ss_pred eEEEecCcccccChH
Q 029420 4 LYALDFDGVLCDSCG 18 (193)
Q Consensus 4 ~vlFDlDGTLvDS~~ 18 (193)
.++++=|||.||+-.
T Consensus 41 ~lvLeeDGT~Vd~Ee 55 (81)
T cd06537 41 TLVLEEDGTAVDSED 55 (81)
T ss_pred EEEEecCCCEEccHH
Confidence 478899999999854
No 233
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=35.76 E-value=21 Score=25.19 Aligned_cols=15 Identities=27% Similarity=0.381 Sum_probs=12.3
Q ss_pred eEEEecCcccccChH
Q 029420 4 LYALDFDGVLCDSCG 18 (193)
Q Consensus 4 ~vlFDlDGTLvDS~~ 18 (193)
.++++=|||.||+-.
T Consensus 42 ~lvL~eDGT~Vd~Ee 56 (78)
T cd06539 42 TLVLEEDGTVVDTEE 56 (78)
T ss_pred EEEEeCCCCEEccHH
Confidence 478899999999853
No 234
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=35.42 E-value=45 Score=27.48 Aligned_cols=32 Identities=16% Similarity=0.205 Sum_probs=23.2
Q ss_pred CCCCHHHHHH---hCCCcEEEEcCcH--HHHHHHHHH
Q 029420 140 FYPGIPDALK---FASSRIYIVTTKA--VSQMLYYES 171 (193)
Q Consensus 140 lypGV~e~L~---~~gi~laVvTnK~--~a~~lL~~~ 171 (193)
+-|...+.|+ ++|++++|+|+.+ .+..+++.+
T Consensus 17 i~~~~~~~i~~l~~~G~~~~iaTGR~~~~~~~~~~~~ 53 (256)
T TIGR00099 17 ISPSTKEALAKLREKGIKVVLATGRPYKEVKNILKEL 53 (256)
T ss_pred cCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHc
Confidence 4466677776 7888888888888 666666554
No 235
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=35.40 E-value=21 Score=25.32 Aligned_cols=15 Identities=20% Similarity=0.290 Sum_probs=12.2
Q ss_pred eEEEecCcccccChH
Q 029420 4 LYALDFDGVLCDSCG 18 (193)
Q Consensus 4 ~vlFDlDGTLvDS~~ 18 (193)
.|+++=|||.||+-.
T Consensus 44 ~lvL~eDGT~VddEe 58 (80)
T cd06536 44 TLVLAEDGTIVEDED 58 (80)
T ss_pred EEEEecCCcEEccHH
Confidence 467899999999843
No 236
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=35.14 E-value=40 Score=26.61 Aligned_cols=32 Identities=22% Similarity=0.291 Sum_probs=24.7
Q ss_pred CCCCCHHHHHH---hCCCcEEEEcCcH--HHHHHHHH
Q 029420 139 RFYPGIPDALK---FASSRIYIVTTKA--VSQMLYYE 170 (193)
Q Consensus 139 ~lypGV~e~L~---~~gi~laVvTnK~--~a~~lL~~ 170 (193)
++=|.+.+.|+ ++|++++|+|+++ .+..+++.
T Consensus 17 ~~~~~~~~~l~~l~~~g~~~~i~TGR~~~~~~~~~~~ 53 (204)
T TIGR01484 17 ELSPETIEALERLREAGVKVVLVTGRSLAEIKELLKQ 53 (204)
T ss_pred cCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHh
Confidence 35577778777 7889999999999 66666654
No 237
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=34.88 E-value=22 Score=25.06 Aligned_cols=14 Identities=29% Similarity=0.273 Sum_probs=11.4
Q ss_pred eEEEecCcccccCh
Q 029420 4 LYALDFDGVLCDSC 17 (193)
Q Consensus 4 ~vlFDlDGTLvDS~ 17 (193)
.++++=|||.||+=
T Consensus 42 ~lvL~eDGT~VddE 55 (78)
T PF02017_consen 42 RLVLEEDGTEVDDE 55 (78)
T ss_dssp EEEETTTTCBESSC
T ss_pred EEEEeCCCcEEccH
Confidence 36788999999974
No 238
>smart00497 IENR1 Intron encoded nuclease repeat motif. Repeat of unknown function, but possibly DNA-binding via helix-turn-helix motif (Ponting, unpublished).
Probab=34.33 E-value=35 Score=20.99 Aligned_cols=25 Identities=36% Similarity=0.440 Sum_probs=18.0
Q ss_pred ceEEEecCcccccChHHHHHHHHHHHHHh
Q 029420 3 DLYALDFDGVLCDSCGESSLSAVKAAKVR 31 (193)
Q Consensus 3 ~~vlFDlDGTLvDS~~di~~a~~~al~~l 31 (193)
.+.++|.||+++...+ |+..|.+.+
T Consensus 3 ~V~~~d~~~~~i~~f~----S~~eAa~~l 27 (53)
T smart00497 3 PVYVYDLDGNLIGEFS----SIREAAKYL 27 (53)
T ss_pred cEEEEeCCCCEEEEec----CHHHHHHHh
Confidence 5789999999987554 444555666
No 239
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=33.57 E-value=49 Score=27.38 Aligned_cols=30 Identities=13% Similarity=0.192 Sum_probs=17.4
Q ss_pred CCHHHHHH---hCCCcEEEEcCcH--HHHHHHHHH
Q 029420 142 PGIPDALK---FASSRIYIVTTKA--VSQMLYYES 171 (193)
Q Consensus 142 pGV~e~L~---~~gi~laVvTnK~--~a~~lL~~~ 171 (193)
|...+.|+ ++|++++|||..+ .+..+++.+
T Consensus 23 ~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l 57 (270)
T PRK10513 23 PAVKQAIAAARAKGVNVVLTTGRPYAGVHRYLKEL 57 (270)
T ss_pred HHHHHHHHHHHHCCCEEEEecCCChHHHHHHHHHh
Confidence 44445555 6666667777666 555555544
No 240
>PF06117 DUF957: Enterobacterial protein of unknown function (DUF957); InterPro: IPR009301 This family consists of several hypothetical proteins from Escherichia coli, Salmonella typhi, Shigella flexneri and Proteus vulgaris. The function of this family is unknown.
Probab=33.53 E-value=65 Score=21.85 Aligned_cols=28 Identities=18% Similarity=-0.067 Sum_probs=19.1
Q ss_pred ceEEEecCcccccChHHHHHHHHHHHHHh
Q 029420 3 DLYALDFDGVLCDSCGESSLSAVKAAKVR 31 (193)
Q Consensus 3 ~~vlFDlDGTLvDS~~di~~a~~~al~~l 31 (193)
.-|+||=|+.-+||+-- .-+..++++.+
T Consensus 25 s~iiFDNded~tdSa~l-lp~ie~a~~~~ 52 (65)
T PF06117_consen 25 SDIIFDNDEDKTDSAAL-LPAIEQARADV 52 (65)
T ss_pred CCeeecCCCcccchHHH-HHHHHHHHHHH
Confidence 46899999999999863 33444444443
No 241
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=33.52 E-value=20 Score=32.10 Aligned_cols=27 Identities=30% Similarity=0.286 Sum_probs=19.9
Q ss_pred eEEEecCcccccChHHHHHHHHHHHHHh
Q 029420 4 LYALDFDGVLCDSCGESSLSAVKAAKVR 31 (193)
Q Consensus 4 ~vlFDlDGTLvDS~~di~~a~~~al~~l 31 (193)
.++||.||+|+-+-.-|..+. .|++.+
T Consensus 37 gfafDIDGVL~RG~~~i~~~~-~Alr~L 63 (389)
T KOG1618|consen 37 GFAFDIDGVLFRGHRPIPGAL-KALRRL 63 (389)
T ss_pred eEEEecccEEEecCCCCcchH-HHHHHH
Confidence 589999999998876665544 455555
No 242
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=33.01 E-value=44 Score=27.81 Aligned_cols=32 Identities=9% Similarity=-0.077 Sum_probs=18.5
Q ss_pred CCCCHHHHHH---hCCCcEEEEcCcH--HHHHHHHHH
Q 029420 140 FYPGIPDALK---FASSRIYIVTTKA--VSQMLYYES 171 (193)
Q Consensus 140 lypGV~e~L~---~~gi~laVvTnK~--~a~~lL~~~ 171 (193)
+-|...+.|+ ++|++++++|+.+ .+..+++.+
T Consensus 20 i~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l 56 (272)
T PRK15126 20 LGEKTLSTLARLRERDITLTFATGRHVLEMQHILGAL 56 (272)
T ss_pred CCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHc
Confidence 4444555555 5666666666666 555555544
No 243
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=31.68 E-value=25 Score=30.41 Aligned_cols=17 Identities=35% Similarity=0.311 Sum_probs=14.2
Q ss_pred EEEecCcccccChHHHH
Q 029420 5 YALDFDGVLCDSCGESS 21 (193)
Q Consensus 5 vlFDlDGTLvDS~~di~ 21 (193)
|+||.||||.|--.|.+
T Consensus 124 IAFDgDaVLfsDesE~v 140 (264)
T PF06189_consen 124 IAFDGDAVLFSDESERV 140 (264)
T ss_pred EEEcCCeEeecCcchHh
Confidence 79999999998766654
No 244
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=31.39 E-value=67 Score=26.56 Aligned_cols=32 Identities=16% Similarity=0.038 Sum_probs=22.7
Q ss_pred CCCCHHHHHH---hCCCcEEEEcCcH--HHHHHHHHH
Q 029420 140 FYPGIPDALK---FASSRIYIVTTKA--VSQMLYYES 171 (193)
Q Consensus 140 lypGV~e~L~---~~gi~laVvTnK~--~a~~lL~~~ 171 (193)
..+...+.|+ ++|++++++|+++ .+..+++.+
T Consensus 17 ~~~~~~~~i~~l~~~g~~~~~~TgR~~~~~~~~~~~~ 53 (256)
T TIGR01486 17 DWGPAKEVLERLQELGIPVIPCTSKTAAEVEYLRKEL 53 (256)
T ss_pred CchHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHc
Confidence 3344666666 7888888888888 666666665
No 245
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=31.38 E-value=54 Score=27.13 Aligned_cols=34 Identities=15% Similarity=0.106 Sum_probs=24.5
Q ss_pred CCCCCHHHHHH---hCCCcEEEEcCcH--HHHHHHHHHh
Q 029420 139 RFYPGIPDALK---FASSRIYIVTTKA--VSQMLYYESL 172 (193)
Q Consensus 139 ~lypGV~e~L~---~~gi~laVvTnK~--~a~~lL~~~~ 172 (193)
++-|-..+.|+ ++|++++++|+.+ .+..+++.+.
T Consensus 20 ~i~~~~~~al~~~~~~g~~v~iaTGR~~~~~~~~~~~l~ 58 (264)
T COG0561 20 TISPETKEALARLREKGVKVVLATGRPLPDVLSILEELG 58 (264)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHcC
Confidence 35566677776 7888888888888 7777776663
No 246
>PF07453 NUMOD1: NUMOD1 domain; InterPro: IPR010896 This helix-turn-helix-containing DNA-binding domain is found associated in homing nucleases [].
Probab=29.98 E-value=45 Score=19.33 Aligned_cols=25 Identities=16% Similarity=0.149 Sum_probs=18.1
Q ss_pred ceEEEecCcccccChHHHHHHHHHHHHHh
Q 029420 3 DLYALDFDGVLCDSCGESSLSAVKAAKVR 31 (193)
Q Consensus 3 ~~vlFDlDGTLvDS~~di~~a~~~al~~l 31 (193)
++.++|+||..+-+.+-+.+| .+.+
T Consensus 2 ~V~~yd~~~~~i~~F~Si~eA----a~~l 26 (37)
T PF07453_consen 2 PVYVYDLNTNEIKSFDSIREA----ARYL 26 (37)
T ss_pred eEEEEECCCCeEEEEcCHHHH----HHHh
Confidence 578999999998666655544 4556
No 247
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=29.31 E-value=30 Score=24.44 Aligned_cols=15 Identities=33% Similarity=0.271 Sum_probs=12.3
Q ss_pred eEEEecCcccccChH
Q 029420 4 LYALDFDGVLCDSCG 18 (193)
Q Consensus 4 ~vlFDlDGTLvDS~~ 18 (193)
.|+++=|||.||+-.
T Consensus 41 ~lvL~eDGT~Vd~Ee 55 (79)
T cd06538 41 SLVLDEDGTGVDTEE 55 (79)
T ss_pred EEEEecCCcEEccHH
Confidence 378899999999843
No 248
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=29.22 E-value=30 Score=32.72 Aligned_cols=15 Identities=27% Similarity=0.408 Sum_probs=12.4
Q ss_pred CceEEEecCcccccC
Q 029420 2 ADLYALDFDGVLCDS 16 (193)
Q Consensus 2 ~~~vlFDlDGTLvDS 16 (193)
.|++++|||+||--+
T Consensus 222 kK~LVLDLDNTLWGG 236 (574)
T COG3882 222 KKALVLDLDNTLWGG 236 (574)
T ss_pred cceEEEecCCccccc
Confidence 478999999999643
No 249
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=28.20 E-value=78 Score=25.14 Aligned_cols=24 Identities=17% Similarity=0.272 Sum_probs=22.2
Q ss_pred CCCCCHHHHHH---hCCCcEEEEcCcH
Q 029420 139 RFYPGIPDALK---FASSRIYIVTTKA 162 (193)
Q Consensus 139 ~lypGV~e~L~---~~gi~laVvTnK~ 162 (193)
...|||.++.. ++|+++.-+|+.|
T Consensus 27 ~~h~g~~~l~~~i~~~GY~ilYlTaRp 53 (157)
T PF08235_consen 27 WTHPGAAELYRKIADNGYKILYLTARP 53 (157)
T ss_pred hhhhcHHHHHHHHHHCCeEEEEECcCc
Confidence 56799999999 9999999999999
No 250
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=27.44 E-value=43 Score=27.63 Aligned_cols=29 Identities=14% Similarity=0.017 Sum_probs=16.0
Q ss_pred CCHHHHHH---hCCCcEEEEcCcH--HHHHHHHH
Q 029420 142 PGIPDALK---FASSRIYIVTTKA--VSQMLYYE 170 (193)
Q Consensus 142 pGV~e~L~---~~gi~laVvTnK~--~a~~lL~~ 170 (193)
|...++++ ++|++++++|+++ .++++++.
T Consensus 24 ~~~~~~i~~~~~~gi~fv~aTGR~~~~~~~~~~~ 57 (249)
T TIGR01485 24 LRLNALLEDHRGEDSLLVYSTGRSPHSYKELQKQ 57 (249)
T ss_pred HHHHHHHHHhhccCceEEEEcCCCHHHHHHHHhc
Confidence 44444444 5666666666666 55555443
No 251
>PRK10976 putative hydrolase; Provisional
Probab=27.26 E-value=68 Score=26.51 Aligned_cols=30 Identities=13% Similarity=0.051 Sum_probs=15.7
Q ss_pred CCHHHHHH---hCCCcEEEEcCcH--HHHHHHHHH
Q 029420 142 PGIPDALK---FASSRIYIVTTKA--VSQMLYYES 171 (193)
Q Consensus 142 pGV~e~L~---~~gi~laVvTnK~--~a~~lL~~~ 171 (193)
|...+.|+ ++|++++|||+.+ .+..+++.+
T Consensus 22 ~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l 56 (266)
T PRK10976 22 PYAKETLKLLTARGIHFVFATGRHHVDVGQIRDNL 56 (266)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHhc
Confidence 33444444 5666666666665 444444443
No 252
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=27.05 E-value=56 Score=28.73 Aligned_cols=27 Identities=19% Similarity=0.496 Sum_probs=23.4
Q ss_pred cCCCCCCCHHHHHH---hCC-CcEEEEcCcH
Q 029420 136 GANRFYPGIPDALK---FAS-SRIYIVTTKA 162 (193)
Q Consensus 136 ~~~~lypGV~e~L~---~~g-i~laVvTnK~ 162 (193)
.+-.+||...++++ +.| ++++|+||-.
T Consensus 89 GEPTLy~~L~elI~~~k~~g~~~tflvTNgs 119 (296)
T COG0731 89 GEPTLYPNLGELIEEIKKRGKKTTFLVTNGS 119 (296)
T ss_pred CCcccccCHHHHHHHHHhcCCceEEEEeCCC
Confidence 34579999999999 888 7999999986
No 253
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=26.73 E-value=77 Score=27.56 Aligned_cols=26 Identities=19% Similarity=0.226 Sum_probs=22.2
Q ss_pred CCCCCCCHHHHHH---hC----CCcEEEEcCcH
Q 029420 137 ANRFYPGIPDALK---FA----SSRIYIVTTKA 162 (193)
Q Consensus 137 ~~~lypGV~e~L~---~~----gi~laVvTnK~ 162 (193)
..+++||+.++|+ .+ |++..++||-.
T Consensus 14 g~~~i~ga~eal~~L~~~~~~~g~~~~flTNn~ 46 (321)
T TIGR01456 14 GKKPIAGASDALRRLNRNQGQLKIPYIFLTNGG 46 (321)
T ss_pred CccccHHHHHHHHHHhccccccCCCEEEEecCC
Confidence 3467999999998 55 99999999986
No 254
>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis]
Probab=26.13 E-value=3.5e+02 Score=25.14 Aligned_cols=46 Identities=15% Similarity=0.147 Sum_probs=30.6
Q ss_pred HHHHHHHHHhhhhccccCCCCCCCHHHHHH-hCCCcEEEEcCcHHHHHHHHHHhHHHH
Q 029420 120 GKVRDEWMDKDLTTWIGANRFYPGIPDALK-FASSRIYIVTTKAVSQMLYYESLQELQ 176 (193)
Q Consensus 120 ~~~r~~y~~~y~~~~~~~~~lypGV~e~L~-~~gi~laVvTnK~~a~~lL~~~~~~~~ 176 (193)
+..|+.+. .|+++-.+.-.+-+.|.+.|+ +.+ .+.++|+..||++.
T Consensus 128 e~lrevlh-~YKKG~idGDdLv~eIa~aL~v~d~----------~~~~vle~vFPEfk 174 (536)
T COG2024 128 ERLREVLH-AYKKGEIDGDDLVHEIAEALEVDDG----------TGLRVLEEVFPEFK 174 (536)
T ss_pred HHHHHHHH-HHhcCCCCcchhHHHHHHHhccCcc----------hHHHHHHHhChHHh
Confidence 33444433 266677777778888999886 322 66778888888764
No 255
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=26.09 E-value=76 Score=26.22 Aligned_cols=52 Identities=15% Similarity=-0.120 Sum_probs=33.1
Q ss_pred CCHHHHHHHHHHHHHHHHHhhhhcc---ccCCCCCCC-HHHHHH---hCCCcEEEEcCcH
Q 029420 110 ENRDALVDLFGKVRDEWMDKDLTTW---IGANRFYPG-IPDALK---FASSRIYIVTTKA 162 (193)
Q Consensus 110 ~~~e~~~~~~~~~r~~y~~~y~~~~---~~~~~lypG-V~e~L~---~~gi~laVvTnK~ 162 (193)
++++++.+...+.+.+|... ..+. ..+..++++ +.++++ +.|+.++|.||-.
T Consensus 19 ~t~eel~~~~~~~~~f~~~s-ggGVt~SGGEPllq~~fl~~l~~~~k~~gi~~~leTnG~ 77 (213)
T PRK10076 19 ITLDALEREVMKDDIFFRTS-GGGVTLSGGEVLMQAEFATRFLQRLRLWGVSCAIETAGD 77 (213)
T ss_pred cCHHHHHHHHHhhhHhhcCC-CCEEEEeCchHHcCHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 46777777777777776421 0011 112235666 577777 8999999999975
No 256
>PF06901 FrpC: RTX iron-regulated protein FrpC; InterPro: IPR010692 This family consists of several RTX iron-regulated FrpC proteins which appear to be found exclusively in Neisseria meningitidis. FrpC has been shown to be related to the RTX family of bacterial cytotoxins. FrpC is found in the meningococcal outer membrane. The function of this family is unknown although it is thought to be a virulence factor [].
Probab=25.50 E-value=36 Score=28.45 Aligned_cols=17 Identities=18% Similarity=0.084 Sum_probs=12.5
Q ss_pred ceEEEecCcccccChHH
Q 029420 3 DLYALDFDGVLCDSCGE 19 (193)
Q Consensus 3 ~~vlFDlDGTLvDS~~d 19 (193)
+.|-||||||+.----.
T Consensus 59 ~~v~~D~~GT~m~iPYG 75 (271)
T PF06901_consen 59 HTVTFDFQGTKMVIPYG 75 (271)
T ss_pred eeEEEeccceEEEeech
Confidence 46889999998754433
No 257
>KOG2630 consensus Enolase-phosphatase E-1 [Amino acid transport and metabolism]
Probab=25.42 E-value=1.1e+02 Score=26.19 Aligned_cols=52 Identities=17% Similarity=0.299 Sum_probs=38.2
Q ss_pred HHHhhhhccccCCCCCCCHHHHHH---hCCCcEEEEcCcH-HHHHHHHHH--hHHHHHH
Q 029420 126 WMDKDLTTWIGANRFYPGIPDALK---FASSRIYIVTTKA-VSQMLYYES--LQELQYH 178 (193)
Q Consensus 126 y~~~y~~~~~~~~~lypGV~e~L~---~~gi~laVvTnK~-~a~~lL~~~--~~~~~~~ 178 (193)
|..-|..+-+ ...+||.|...++ ++|++++|-++-. .|.++|=.+ -.+++.-
T Consensus 111 w~~gy~sg~l-k~~v~aDv~~a~e~w~~~g~~vyIYSSgsv~AqKllfg~s~~gdl~~y 168 (254)
T KOG2630|consen 111 WAAGYESGEL-KAHVYADVLPAIERWSGEGVRVYIYSSGSVAAQKLLFGYSDAGDLRKY 168 (254)
T ss_pred HHhhcccccc-cccccchhHHHHHHHhhcCceEEEEcCCcHHHHHHHHcccCcchHHHH
Confidence 4555666655 4489999999999 8999999999888 888776544 3444443
No 258
>COG2442 Uncharacterized conserved protein [Function unknown]
Probab=25.31 E-value=1.8e+02 Score=20.33 Aligned_cols=29 Identities=17% Similarity=0.313 Sum_probs=21.5
Q ss_pred cccHHHHhhhhcchhhhhhhhcCCCHHHHHHHHHHHHHH
Q 029420 87 GLTVEGILENWSKIKPVIMEDWSENRDALVDLFGKVRDE 125 (193)
Q Consensus 87 ~~~~~~~~~~~~~l~~~~~~~~g~~~e~~~~~~~~~r~~ 125 (193)
|.+.+++..+|+ +++.+++.++...+.++
T Consensus 43 G~s~eeil~dyp----------~Lt~~dI~aal~ya~~~ 71 (79)
T COG2442 43 GESIEEILADYP----------DLTLEDIRAALRYAADR 71 (79)
T ss_pred CCCHHHHHHhCC----------CCCHHHHHHHHHHHHHH
Confidence 666777777765 37889999888866665
No 259
>cd04865 LigD_Pol_like_2 LigD_Pol_like_2: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD, subgroup 2. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The Pol domains of PaeLigD and Mycobacterium tuberculosis (Mt)LigD are stimulated by manganese, are error-prone, and prefer adding rNTPs to dNTPs in vitro; however PaeLigD and MtLigD belong to other subgroups, proteins in this subgroup await functional characterization.
Probab=25.20 E-value=88 Score=26.46 Aligned_cols=29 Identities=17% Similarity=0.039 Sum_probs=17.9
Q ss_pred ceEEEecCcccccChHHHHHHH---HHHHHHh
Q 029420 3 DLYALDFDGVLCDSCGESSLSA---VKAAKVR 31 (193)
Q Consensus 3 ~~vlFDlDGTLvDS~~di~~a~---~~al~~l 31 (193)
+-++||||--==-+..++..++ +..|.++
T Consensus 100 D~lvfDLDP~~~~~f~~v~~~A~~vr~~L~~l 131 (228)
T cd04865 100 DELVIDLDPQPGTSFEDVVEVALLVREVLDEL 131 (228)
T ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 5789999955333445555544 5566666
No 260
>cd04861 LigD_Pol_like LigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. PaeLigD is monomeric, containing an N-terminal phosphoesterase module, a central polymerase (Pol) domain, and a C-terminal ATP-dependent ligase domain. Mycobacterium tuberculosis (Mt)LigD, also found in this group, is monomeric and contains the same modules but these are arranged differently: an N-terminal Pol domain, a central phosphoesterase module, and a C-terminal ligase domain. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase do
Probab=25.05 E-value=88 Score=26.43 Aligned_cols=29 Identities=14% Similarity=0.015 Sum_probs=19.0
Q ss_pred ceEEEecCcccccChHHHHHHHH---HHHHHh
Q 029420 3 DLYALDFDGVLCDSCGESSLSAV---KAAKVR 31 (193)
Q Consensus 3 ~~vlFDlDGTLvDS~~di~~a~~---~al~~l 31 (193)
+-++||||--==.+..++..++. ..|.++
T Consensus 99 D~lvfDLDP~~~~~f~~v~~~A~~vr~~L~~l 130 (227)
T cd04861 99 DRLVFDLDPGPGVPFEDVVEAALLLRELLDEL 130 (227)
T ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 67999999654456666665554 455555
No 261
>TIGR02778 ligD_pol DNA polymerase LigD, polymerase domain. DNA repair of double-stranded breaks by non-homologous end joining (NHEJ) is accomplished by a two-protein system that is present in a minority of prokaryotes. One component is the Ku protein (see TIGR02772), which binds DNA ends. The other is a DNA ligase, a protein that is a multidomain polypeptide in most of those bacteria that have NHEJ, a permuted polypeptide in Mycobacterium tuberculosis and a few other species, and the product of tandem genes in some other bacteria. This model represents the polymerase domain.
Probab=24.41 E-value=91 Score=26.65 Aligned_cols=29 Identities=14% Similarity=-0.097 Sum_probs=18.3
Q ss_pred ceEEEecCcccccChHHHHHHH---HHHHHHh
Q 029420 3 DLYALDFDGVLCDSCGESSLSA---VKAAKVR 31 (193)
Q Consensus 3 ~~vlFDlDGTLvDS~~di~~a~---~~al~~l 31 (193)
+-++||||--==.+..++..++ +..|.++
T Consensus 115 D~lvfDLDP~~~~~f~~v~~~A~~~r~~L~~l 146 (245)
T TIGR02778 115 DRIVFDLDPGPGVAWKLVVEAAQLIRELLDEL 146 (245)
T ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 5689999965433555555555 4555666
No 262
>cd04862 PaeLigD_Pol_like PaeLigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. PaeLigD is monomeric, containing an N-terminal phosphoesterase module, a central polymerase (Pol) domain, and a C-terminal ATP-dependent ligase domain. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The PaeLigD Pol domain in vitro, in a manganese-dependent fashion, catalyzes templated extensions of 5'-overhang duplex DNA, and nontemplated single-nu
Probab=23.81 E-value=97 Score=26.19 Aligned_cols=29 Identities=14% Similarity=-0.030 Sum_probs=18.7
Q ss_pred ceEEEecCcccccChHHHHHHHH---HHHHHh
Q 029420 3 DLYALDFDGVLCDSCGESSLSAV---KAAKVR 31 (193)
Q Consensus 3 ~~vlFDlDGTLvDS~~di~~a~~---~al~~l 31 (193)
+-++||||--==.+..++..++. ..|.++
T Consensus 99 D~lvfDLDP~~~~~f~~v~~~A~~~r~~L~~l 130 (227)
T cd04862 99 DRIVFDLDPGPGVPWKAVVEAALLVRELLDEL 130 (227)
T ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 57899999654445566665554 455555
No 263
>cd04863 MtLigD_Pol_like MtLigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Mycobacterium tuberculosis (Mt)LigD. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. MtLigD is monomeric and contains an N-terminal Pol domain, a central phosphoesterase module, and a C-terminal ligase domain. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The MtLigD Pol domain is stimulated by manganese, is error-prone, and prefers adding rNTPs to dNTPs in vitro. The MtLigD Pol domain has been shown to prefer DNA gapped substrates
Probab=23.10 E-value=1e+02 Score=26.14 Aligned_cols=29 Identities=17% Similarity=0.031 Sum_probs=18.7
Q ss_pred ceEEEecCcccccChHHHHHHHH---HHHHHh
Q 029420 3 DLYALDFDGVLCDSCGESSLSAV---KAAKVR 31 (193)
Q Consensus 3 ~~vlFDlDGTLvDS~~di~~a~~---~al~~l 31 (193)
+-++||||--==.+..++..++. ..|.++
T Consensus 103 D~~vfDLDP~~~~~f~~v~~~A~~~r~~L~~l 134 (231)
T cd04863 103 DRLVFDLDPGEPAGLVECARVALWLRDRLAAL 134 (231)
T ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 57899999654445566655554 455555
No 264
>KOG2469 consensus IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=22.95 E-value=41 Score=30.90 Aligned_cols=24 Identities=4% Similarity=0.088 Sum_probs=20.3
Q ss_pred hCCCcEEEEcCcH--HHHHHHHHHhH
Q 029420 150 FASSRIYIVTTKA--VSQMLYYESLQ 173 (193)
Q Consensus 150 ~~gi~laVvTnK~--~a~~lL~~~~~ 173 (193)
+.|.++.++||-. ++..++++.+.
T Consensus 212 ~sGKk~fl~Tns~~~ytd~~mt~~~~ 237 (424)
T KOG2469|consen 212 DSGKKTFLHTNSDWDYTDIFMAFHYG 237 (424)
T ss_pred hhccceEEeeccccchhhHHHHHHhC
Confidence 9999999999988 88877777654
No 265
>PF01976 DUF116: Protein of unknown function DUF116; InterPro: IPR002829 These archaeal and bacterial proteins have no known function. Members of this family contain seven conserved cysteines and may also be an integral membrane protein.
Probab=21.91 E-value=1.1e+02 Score=24.27 Aligned_cols=32 Identities=22% Similarity=0.233 Sum_probs=25.9
Q ss_pred CHHHHHH---hCCCcEEEEcCcHHHHHHHHHHhHH
Q 029420 143 GIPDALK---FASSRIYIVTTKAVSQMLYYESLQE 174 (193)
Q Consensus 143 GV~e~L~---~~gi~laVvTnK~~a~~lL~~~~~~ 174 (193)
.|.++++ +.|+++.|||+-.+|+++++..-++
T Consensus 74 ~Ig~l~~lae~~g~~v~i~~Ggt~ar~~ik~~~p~ 108 (158)
T PF01976_consen 74 DIGDLKKLAEKYGYKVYIATGGTLARKIIKEYRPK 108 (158)
T ss_pred chhHHHHHHHHcCCEEEEEcChHHHHHHHHHhCCC
Confidence 3666666 9999999999988999998887553
No 266
>cd04866 LigD_Pol_like_3 LigD_Pol_like_3: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD, subgroup 3. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. It has been suggested that LigD Pol contributes to NHEJ-mediated repair DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The Pol domains of PaeLigD and Mycobacterium tuberculosis (Mt)LigD are stimulated by manganese, are error-prone, and prefer adding rNTPs to dNTPs in vitro; however PaeLigD and MtLigD belong to other subgroups, proteins in this subgroup await functional characterization.
Probab=21.86 E-value=1.1e+02 Score=25.77 Aligned_cols=29 Identities=14% Similarity=0.012 Sum_probs=18.0
Q ss_pred ceEEEecCcccccChHHHHHHH---HHHHHHh
Q 029420 3 DLYALDFDGVLCDSCGESSLSA---VKAAKVR 31 (193)
Q Consensus 3 ~~vlFDlDGTLvDS~~di~~a~---~~al~~l 31 (193)
+-++||||--==.+..++..++ +..|.++
T Consensus 94 D~lvfDLDP~~~~~f~~v~~~A~~vr~~L~~l 125 (223)
T cd04866 94 SEIVFDLDPPSRDHFSLAVEAANLLKEILDAL 125 (223)
T ss_pred CeEEEECCCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 5789999964333555555554 4556666
No 267
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=20.87 E-value=88 Score=21.90 Aligned_cols=23 Identities=9% Similarity=0.059 Sum_probs=16.3
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHH
Q 029420 105 MEDWSENRDALVDLFGKVRDEWM 127 (193)
Q Consensus 105 ~~~~g~~~e~~~~~~~~~r~~y~ 127 (193)
+++.|++.+++...-..|+..|.
T Consensus 23 LrR~Gfs~~~i~~l~~ayr~l~~ 45 (83)
T PF13720_consen 23 LRRRGFSKEEISALRRAYRILFR 45 (83)
T ss_dssp HHHTTS-HHHHHHHHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHHHHHHHHh
Confidence 46678888888777777777764
No 268
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=20.83 E-value=93 Score=25.29 Aligned_cols=22 Identities=14% Similarity=0.042 Sum_probs=12.8
Q ss_pred hCCCcEEEEcCcH--HHHHHHHHH
Q 029420 150 FASSRIYIVTTKA--VSQMLYYES 171 (193)
Q Consensus 150 ~~gi~laVvTnK~--~a~~lL~~~ 171 (193)
++|++++|+|+++ .++.+++.+
T Consensus 28 ~~gi~~viaTGR~~~~v~~~~~~l 51 (236)
T TIGR02471 28 GDAVGFGIATGRSVESAKSRYAKL 51 (236)
T ss_pred CCCceEEEEeCCCHHHHHHHHHhC
Confidence 5566666666666 555555444
Done!