BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029421
(193 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I3B|A Chain A, Solution Structure Of A Human Cancer-Related Nucleoside
Triphosphatase
Length = 189
Score = 137 bits (345), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 80/179 (44%), Positives = 108/179 (60%), Gaps = 9/179 (5%)
Query: 10 LVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPLA 69
+TGPPGVGKTTLI + E LK+S + V GFYT E+RQGG+R+GF+VVTL R PL+
Sbjct: 5 FLTGPPGVGKTTLIHKASEVLKSSG--VPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLS 62
Query: 70 SINASSPESYRWPTVGRYKVDVASFEAIALPELQ-----VGADTDLFVIDEVGKMELFSS 124
+ P R VG+Y VD+ SFE +ALP L+ G + VIDE+GKMELFS
Sbjct: 63 RVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQ 122
Query: 125 SFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNHPGATIFTLSPGNRDSLKDNI 182
F AV + L + +L +IP PK G+ + V +RN +F ++ NR+ L +I
Sbjct: 123 LFIQAVRQTLSTPGTIILGTIPVPK-GKPLALVEEIRNRKDVKVFNVTKENRNHLLPDI 180
>pdb|1YE8|A Chain A, Crystal Structure Of Thep1 From The Hyperthermophile
Aquifex Aeolicus
Length = 178
Score = 97.8 bits (242), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 103/184 (55%), Gaps = 24/184 (13%)
Query: 9 FLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR--QGGQRVGFEVVTLDDRRA 66
++TG PGVGKTTL+ +++E L + GF+T E+R + +R GF ++T + ++
Sbjct: 3 IIITGEPGVGKTTLVKKIVERL-----GKRAIGFWTEEVRDPETKKRTGFRIITTEGKKK 57
Query: 67 PLASINASSPESYRWPTVGRYKVDVASFEAIALPELQVG---ADTD---LFVIDEVGKME 120
+S +S + VG Y V+V FE +A+P L+ A D + +IDE+GK E
Sbjct: 58 IFSSKFFTSKK-----LVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKXE 112
Query: 121 LFSSSFFPAVLRILES-NIPVLASIPAPKSGRDI-PAVARLRNHPGATIFTLSPGNRDSL 178
LFS F V +I N+ V+A+IP RD+ P V +R PGA + L+P NRD +
Sbjct: 113 LFSKKFRDLVRQIXHDPNVNVVATIPI----RDVHPLVKEIRRLPGAVLIELTPENRDVI 168
Query: 179 KDNI 182
++I
Sbjct: 169 LEDI 172
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 33.5 bits (75), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 8/64 (12%)
Query: 5 AGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQG--FYTGEIRQGGQRVGFEVVTLD 62
AG+ L+ GPPG GKT L + + + L + P + G Y+ EI++ EV+ +
Sbjct: 62 AGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKK------TEVLMEN 115
Query: 63 DRRA 66
RRA
Sbjct: 116 FRRA 119
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 8/64 (12%)
Query: 5 AGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQG--FYTGEIRQGGQRVGFEVVTLD 62
AG+ L+ GPPG GKT L + + + L + P G Y+ EI++ EV+ +
Sbjct: 76 AGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPXVGSEVYSTEIKK------TEVLXEN 129
Query: 63 DRRA 66
RRA
Sbjct: 130 FRRA 133
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Query: 7 KCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRRA 66
K L+ GP GVGKT I R L L A+ P +KV+ E+ G+ V + L D
Sbjct: 51 KNILMIGPTGVGKTE-IARRLAKL-ANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAV 108
Query: 67 PLASINASSPESYRWPTVGRYKV 89
+ + A YR + ++
Sbjct: 109 KMVRVQAIEKNRYRAEELAEERI 131
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Query: 7 KCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRRA 66
K L+ GP GVGKT I R L L A+ P +KV+ E+ G+ V + L D
Sbjct: 50 KNILMIGPTGVGKTE-IARRLAKL-ANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAV 107
Query: 67 PLASINASSPESYRWPTVGRYKV 89
+ + A YR + ++
Sbjct: 108 KMVRVQAIEKNRYRAEELAEERI 130
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Query: 7 KCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRRA 66
K L+ GP GVGKT I R L L A+ P +KV+ E+ G+ V + L D
Sbjct: 57 KNILMIGPTGVGKTE-IARRLAKL-ANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAV 114
Query: 67 PLASINASSPESYRWPTVGRYKV 89
+ + A YR + ++
Sbjct: 115 KMVRVQAIEKNRYRAEELAEERI 137
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Atp,
I4122 Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Atp,
I4122 Space Group
Length = 286
Score = 31.6 bits (70), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 6 GKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQG 41
G+ +TG G GKT+L+M +L L+AS +K G
Sbjct: 64 GEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse
Cftr Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse
Cftr Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse
Cftr Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse
Cftr Protein, Deltaf508 Mutant
Length = 285
Score = 31.6 bits (70), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 6 GKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQG 41
G+ +TG G GKT+L+M +L L+AS +K G
Sbjct: 64 GEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 31.6 bits (70), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 6 GKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQG 41
G+ +TG G GKT+L+M +L L+AS +K G
Sbjct: 64 GEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 31.6 bits (70), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 6 GKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQG 41
G+ +TG G GKT+L+M +L L+AS +K G
Sbjct: 64 GEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 31.6 bits (70), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 6 GKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQG 41
G+ +TG G GKT+L+M +L L+AS +K G
Sbjct: 64 GEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
>pdb|3TR0|A Chain A, Structure Of Guanylate Kinase (Gmk) From Coxiella Burnetii
Length = 205
Score = 30.4 bits (67), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 55/133 (41%), Gaps = 12/133 (9%)
Query: 2 AAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTL 61
A F+++ P G GKT+L+ ++++L +K+ +T ++ G + G + +
Sbjct: 3 AXNKANLFIISAPSGAGKTSLVRALVKAL----AEIKISISHTTRPKRPGDQEGVDYFFI 58
Query: 62 DDRRAPLASINASSPESYRWPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEVGKMEL 121
D+ R A E Y+ + + L +L+ G D L ID G ++
Sbjct: 59 DETR-----FQAXVKEGAFLEHATIYERHYGTEKDWVLRQLKAGRDV-LLEIDWQGARQI 112
Query: 122 FSSSFFPAVLRIL 134
FP L I
Sbjct: 113 --RELFPPALSIF 123
>pdb|1RHC|A Chain A, F420-Dependent Secondary Alcohol Dehydrogenase In
Complex With An F420-Acetone Adduct
Length = 330
Score = 30.0 bits (66), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 51 GQRVGFEVVTLDDRRAPLASINASSPESYRW 81
++VGF+ V +DD P NA S +++ W
Sbjct: 26 AEKVGFDSVWVDDHFHPWYHDNAQSAQAWAW 56
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 30.0 bits (66), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 5 AGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQG 41
AG+ L+ G PG GKT + M + ++L P + G
Sbjct: 69 AGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAG 105
>pdb|4B3G|A Chain A, Crystal Structure Of Ighmbp2 Helicase In Complex With Rna
pdb|4B3G|B Chain B, Crystal Structure Of Ighmbp2 Helicase In Complex With Rna
Length = 646
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 10 LVTGPPGVGKTTLIMRVLESLKASNPSLKV 39
++ GPPG GKTT ++ ++ L+A LKV
Sbjct: 209 IIHGPPGTGKTTTVVEII--LQAVKQGLKV 236
>pdb|2BDT|A Chain A, Crystal Structure Of The Putative Gluconate Kinase From
Bacillus Halodurans, Northeast Structural Genomics
Target Bhr61
Length = 189
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 7 KCFLVTGPPGVGKTTLIMRVLESLKAS 33
K +++TGP GVGK+T R+ L S
Sbjct: 3 KLYIITGPAGVGKSTTCKRLAAQLDNS 29
>pdb|4B3F|X Chain X, Crystal Structure Of 1ghmbp2 Helicase
Length = 646
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 10 LVTGPPGVGKTTLIMRVLESLKASNPSLKV 39
++ GPPG GKTT ++ ++ L+A LKV
Sbjct: 209 IIHGPPGTGKTTTVVEII--LQAVKQGLKV 236
>pdb|1NKS|A Chain A, Adenylate Kinase From Sulfolobus Acidocaldarius
pdb|1NKS|B Chain B, Adenylate Kinase From Sulfolobus Acidocaldarius
pdb|1NKS|C Chain C, Adenylate Kinase From Sulfolobus Acidocaldarius
pdb|1NKS|D Chain D, Adenylate Kinase From Sulfolobus Acidocaldarius
pdb|1NKS|E Chain E, Adenylate Kinase From Sulfolobus Acidocaldarius
pdb|1NKS|F Chain F, Adenylate Kinase From Sulfolobus Acidocaldarius
Length = 194
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 7 KCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGF 42
K +VTG PGVGK+T++ +V E L + K+ +
Sbjct: 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINY 37
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 6 GKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQG 41
G+ V G G GKT+L+M ++ L+ S +K G
Sbjct: 64 GQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG 99
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 7 KCFLVTGPPGVGKTTLIMRVLESLKAS 33
+ L+ GPPG GKT L+ V S KA+
Sbjct: 207 RGVLLYGPPGTGKTMLVKAVANSTKAA 233
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 6 GKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQG 41
G+ V G G GKT+L+M ++ L+ S +K G
Sbjct: 64 GQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG 99
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 6 GKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQG 41
G+ V G G GKT+L+M ++ L+ S +K G
Sbjct: 64 GQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG 99
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 6 GKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQG 41
G+ V G G GKT+L+M ++ L+ S +K G
Sbjct: 64 GQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG 99
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 6 GKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQG 41
G+ V G G GKT+L+M ++ L+ S +K G
Sbjct: 64 GQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG 99
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 6 GKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQG 41
G+ V G G GKT+L+M ++ L+ S +K G
Sbjct: 46 GQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG 81
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 6 GKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQG 41
G+ V G G GKT+L+M ++ L+ S +K G
Sbjct: 34 GQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG 69
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 6 GKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQG 41
G+ V G G GKT+L+M ++ L+ S +K G
Sbjct: 34 GQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG 69
>pdb|1PV4|A Chain A, X-Ray Crystal Structure Of The Rho Transcription
Termination Factor In Complex With Single Stranded Dna
pdb|1PV4|B Chain B, X-Ray Crystal Structure Of The Rho Transcription
Termination Factor In Complex With Single Stranded Dna
pdb|1PV4|C Chain C, X-Ray Crystal Structure Of The Rho Transcription
Termination Factor In Complex With Single Stranded Dna
pdb|1PV4|D Chain D, X-Ray Crystal Structure Of The Rho Transcription
Termination Factor In Complex With Single Stranded Dna
pdb|1PV4|E Chain E, X-Ray Crystal Structure Of The Rho Transcription
Termination Factor In Complex With Single Stranded Dna
pdb|1PV4|F Chain F, X-Ray Crystal Structure Of The Rho Transcription
Termination Factor In Complex With Single Stranded Dna
Length = 419
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 4 GAGKCFLVTGPPGVGKTTLIMRVLESLKASNP 35
G G+ L+ PP GKT L+ + +S+ ++P
Sbjct: 169 GRGQRGLIVAPPKAGKTXLLQNIAQSIAYNHP 200
>pdb|3ICE|A Chain A, Rho Transcription Termination Factor Bound To Rna And
Adp-Bef3
pdb|3ICE|B Chain B, Rho Transcription Termination Factor Bound To Rna And
Adp-Bef3
pdb|3ICE|C Chain C, Rho Transcription Termination Factor Bound To Rna And
Adp-Bef3
pdb|3ICE|D Chain D, Rho Transcription Termination Factor Bound To Rna And
Adp-Bef3
pdb|3ICE|E Chain E, Rho Transcription Termination Factor Bound To Rna And
Adp-Bef3
pdb|3ICE|F Chain F, Rho Transcription Termination Factor Bound To Rna And
Adp-Bef3
Length = 422
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 4 GAGKCFLVTGPPGVGKTTLIMRVLESLKASNP 35
G G+ L+ PP GKT L+ + +S+ ++P
Sbjct: 172 GRGQRGLIVAPPKAGKTXLLQNIAQSIAYNHP 203
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQG 50
+ G+C LV G G GK+TL+ V ++ ++ + Y GE ++G
Sbjct: 28 LVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDV----LYDGERKKG 73
>pdb|1PVO|A Chain A, X-Ray Crystal Structure Of Rho Transcription Termination
Factor In Complex With Ssrna Substrate And Anppnp
pdb|1PVO|B Chain B, X-Ray Crystal Structure Of Rho Transcription Termination
Factor In Complex With Ssrna Substrate And Anppnp
pdb|1PVO|C Chain C, X-Ray Crystal Structure Of Rho Transcription Termination
Factor In Complex With Ssrna Substrate And Anppnp
pdb|1PVO|D Chain D, X-Ray Crystal Structure Of Rho Transcription Termination
Factor In Complex With Ssrna Substrate And Anppnp
pdb|1PVO|E Chain E, X-Ray Crystal Structure Of Rho Transcription Termination
Factor In Complex With Ssrna Substrate And Anppnp
pdb|1PVO|F Chain F, X-Ray Crystal Structure Of Rho Transcription Termination
Factor In Complex With Ssrna Substrate And Anppnp
pdb|1XPR|A Chain A, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-formylbicyclomycin (fb)
pdb|1XPR|B Chain B, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-formylbicyclomycin (fb)
pdb|1XPR|C Chain C, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-formylbicyclomycin (fb)
pdb|1XPR|D Chain D, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-formylbicyclomycin (fb)
pdb|1XPR|E Chain E, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-formylbicyclomycin (fb)
pdb|1XPR|F Chain F, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-formylbicyclomycin (fb)
pdb|1XPU|A Chain A, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-(3-Formylphenylsulfanyl)- Dihydrobicyclomycin (Fpdb)
pdb|1XPU|B Chain B, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-(3-Formylphenylsulfanyl)- Dihydrobicyclomycin (Fpdb)
pdb|1XPU|C Chain C, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-(3-Formylphenylsulfanyl)- Dihydrobicyclomycin (Fpdb)
pdb|1XPU|D Chain D, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-(3-Formylphenylsulfanyl)- Dihydrobicyclomycin (Fpdb)
pdb|1XPU|E Chain E, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-(3-Formylphenylsulfanyl)- Dihydrobicyclomycin (Fpdb)
pdb|1XPU|F Chain F, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-(3-Formylphenylsulfanyl)- Dihydrobicyclomycin (Fpdb)
pdb|1XPO|A Chain A, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
Bicyclomycin
pdb|1XPO|B Chain B, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
Bicyclomycin
pdb|1XPO|C Chain C, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
Bicyclomycin
pdb|1XPO|D Chain D, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
Bicyclomycin
pdb|1XPO|E Chain E, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
Bicyclomycin
pdb|1XPO|F Chain F, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
Bicyclomycin
Length = 419
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 4 GAGKCFLVTGPPGVGKTTLIMRVLESLKASNP 35
G G+ L+ PP GKT L+ + +S+ ++P
Sbjct: 169 GRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHP 200
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQG 50
+ G+C LV G G GK+TL+ V ++ ++ + Y GE ++G
Sbjct: 30 LVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDV----LYDGERKKG 75
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 6 GKCFLVTGPPGVGKTTLIMRVLESL 30
G + GPPGVGKT+L + +SL
Sbjct: 108 GPILCLAGPPGVGKTSLAKSIAKSL 132
>pdb|2HT1|A Chain A, The Closed Ring Structure Of The Rho Transcription
Termination Factor In Complex With Nucleic Acid In The
Motor Domains
pdb|2HT1|B Chain B, The Closed Ring Structure Of The Rho Transcription
Termination Factor In Complex With Nucleic Acid In The
Motor Domains
Length = 433
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 4 GAGKCFLVTGPPGVGKTTLIMRVLESLKASNP 35
G G+ L+ PP GKT L+ + +S+ ++P
Sbjct: 191 GRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHP 222
>pdb|2B4O|A Chain A, Structure Of The R258k Mutant Of Selenomonas Ruminantium
Ptp-Like Phytase
pdb|2B4O|B Chain B, Structure Of The R258k Mutant Of Selenomonas Ruminantium
Ptp-Like Phytase
Length = 334
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 8/40 (20%)
Query: 16 GVGKTTLIMRVLESLKASNPSLK--------VQGFYTGEI 47
GVGKTT M + + LK + SLK + GFY GE
Sbjct: 243 GVGKTTAFMVMTDMLKNPSVSLKDILYRQHEIGGFYYGEF 282
>pdb|2WWW|A Chain A, Crystal Structure Of Methylmalonic Acidemia Type A Protein
pdb|2WWW|B Chain B, Crystal Structure Of Methylmalonic Acidemia Type A Protein
pdb|2WWW|C Chain C, Crystal Structure Of Methylmalonic Acidemia Type A Protein
pdb|2WWW|D Chain D, Crystal Structure Of Methylmalonic Acidemia Type A Protein
Length = 349
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 44/108 (40%), Gaps = 11/108 (10%)
Query: 11 VTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPLAS 70
++GPPG GK+T I + L L V GG +G + + R A
Sbjct: 79 LSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAY 138
Query: 71 INASSPESYRWPTVGRY-KVDVASFEAIALPELQVGADTDLFVIDEVG 117
I S PT G V + EAI L E GA D+ +I+ VG
Sbjct: 139 IRPS-------PTRGTLGGVTRTTNEAILLCE---GAGYDIILIETVG 176
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
Length = 444
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
Query: 7 KCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRRA 66
K L+ GP GVGKT I R L L A+ P +KV+ E+ G+ V + L D
Sbjct: 51 KNILMIGPTGVGKTE-IARRLAKL-ANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAM 108
Query: 67 PLASINASSPESYRWPTVGRYKV 89
L + R V ++
Sbjct: 109 KLVRQQEIAKNRARAEDVAEERI 131
>pdb|2QOR|A Chain A, Crystal Structure Of Plasmodium Vivax Guanylate Kinase
Length = 204
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/18 (66%), Positives = 14/18 (77%)
Query: 10 LVTGPPGVGKTTLIMRVL 27
+V GP GVGK TLI +VL
Sbjct: 16 VVCGPSGVGKGTLIKKVL 33
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 7 KCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDD 63
K L+ GP GVGKT I R L L A+ P +KV+ E+ G+ V + L D
Sbjct: 51 KNILMIGPTGVGKTE-IARRLAKL-ANAPFIKVEATKFTEVGYVGKEVDSIIRDLTD 105
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 27.3 bits (59), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
Query: 10 LVTGPPGVGKTTLIMRVLESLK-----ASNPSLKVQG 41
L+ GPPG+GKTTL + L+ S P L QG
Sbjct: 55 LLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQG 91
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
Query: 10 LVTGPPGVGKTTLIMRVLESLK-----ASNPSLKVQG 41
L+ GPPG+GKTTL + L+ S P L QG
Sbjct: 55 LLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQG 91
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 27.3 bits (59), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
Query: 10 LVTGPPGVGKTTLIMRVLESLK-----ASNPSLKVQG 41
L+ GPPG+GKTTL + L+ S P L QG
Sbjct: 55 LLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQG 91
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 27.3 bits (59), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
Query: 10 LVTGPPGVGKTTLIMRVLESLK-----ASNPSLKVQG 41
L+ GPPG+GKTTL + L+ S P L QG
Sbjct: 55 LLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQG 91
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 27.3 bits (59), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 14/22 (63%)
Query: 1 MAAGAGKCFLVTGPPGVGKTTL 22
M A K L+ GPPGVGKT L
Sbjct: 59 MGARIPKGVLLVGPPGVGKTHL 80
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 27.3 bits (59), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
Query: 10 LVTGPPGVGKTTLIMRVLESLK-----ASNPSLKVQG 41
L+ GPPG+GKTTL + L+ S P L QG
Sbjct: 55 LLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQG 91
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 26.9 bits (58), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 14/22 (63%)
Query: 1 MAAGAGKCFLVTGPPGVGKTTL 22
M A K L+ GPPGVGKT L
Sbjct: 68 MGARIPKGVLLVGPPGVGKTHL 89
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 26.9 bits (58), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 2/83 (2%)
Query: 7 KCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRRA 66
K L GP GVGKT I R L L A+ P +KV+ E+ G+ V + L D
Sbjct: 51 KNILXIGPTGVGKTE-IARRLAKL-ANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAX 108
Query: 67 PLASINASSPESYRWPTVGRYKV 89
L + R V ++
Sbjct: 109 KLVRQQEIAKNRARAEDVAEERI 131
>pdb|1RKB|A Chain A, The Structure Of Adrenal Gland Protein Ad-004
Length = 173
Score = 26.9 bits (58), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/13 (84%), Positives = 12/13 (92%)
Query: 10 LVTGPPGVGKTTL 22
L+TG PGVGKTTL
Sbjct: 8 LLTGTPGVGKTTL 20
>pdb|3MMJ|A Chain A, Structure Of The Ptp-Like Phytase From Selenomonas
Ruminantium In Complex With Myo-Inositol
Hexakisphosphate
pdb|3MMJ|B Chain B, Structure Of The Ptp-Like Phytase From Selenomonas
Ruminantium In Complex With Myo-Inositol
Hexakisphosphate
Length = 314
Score = 26.9 bits (58), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 8/40 (20%)
Query: 16 GVGKTTLIMRVLESLKASNPSLK--------VQGFYTGEI 47
GVG+TT M + + LK + SLK + GFY GE
Sbjct: 223 GVGRTTAFMVMTDMLKNPSVSLKDILYRQHEIGGFYYGEF 262
>pdb|3MOZ|A Chain A, Structure Of The Ptp-Like Phytase From Selenomonas
Ruminantium In Complex With Myo-Inositol
(1,2,3,5,6)pentakisphosphate
pdb|3MOZ|B Chain B, Structure Of The Ptp-Like Phytase From Selenomonas
Ruminantium In Complex With Myo-Inositol
(1,2,3,5,6)pentakisphosphate
Length = 314
Score = 26.9 bits (58), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 8/40 (20%)
Query: 16 GVGKTTLIMRVLESLKASNPSLK--------VQGFYTGEI 47
GVG+TT M + + LK + SLK + GFY GE
Sbjct: 223 GVGRTTAFMVMTDMLKNPSVSLKDILYRQHEIGGFYYGEF 262
>pdb|3O3L|A Chain A, Structure Of The Ptp-Like Phytase From Selenomonas
Ruminantium In Complex With Myo-Inositol
(1,3,4,5)tetrakisphosphate
pdb|3O3L|B Chain B, Structure Of The Ptp-Like Phytase From Selenomonas
Ruminantium In Complex With Myo-Inositol
(1,3,4,5)tetrakisphosphate
Length = 340
Score = 26.9 bits (58), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 8/40 (20%)
Query: 16 GVGKTTLIMRVLESLKASNPSLK--------VQGFYTGEI 47
GVG+TT M + + LK + SLK + GFY GE
Sbjct: 249 GVGRTTAFMVMTDMLKNPSVSLKDILYRQHEIGGFYYGEF 288
>pdb|2B4P|A Chain A, Structure Of The D223n Mutant Of Selenomonas Ruminantium
Ptp-Like Phytase
pdb|2B4P|B Chain B, Structure Of The D223n Mutant Of Selenomonas Ruminantium
Ptp-Like Phytase
Length = 334
Score = 26.9 bits (58), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 8/40 (20%)
Query: 16 GVGKTTLIMRVLESLKASNPSLK--------VQGFYTGEI 47
GVG+TT M + + LK + SLK + GFY GE
Sbjct: 243 GVGRTTAFMVMTDMLKNPSVSLKDILYRQHEIGGFYYGEF 282
>pdb|1U26|A Chain A, Crystal Structure Of Selenomonas Ruminantium Phytase
Complexed With Persulfated Phytate
pdb|1U26|B Chain B, Crystal Structure Of Selenomonas Ruminantium Phytase
Complexed With Persulfated Phytate
Length = 337
Score = 26.9 bits (58), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 8/40 (20%)
Query: 16 GVGKTTLIMRVLESLKASNPSLK--------VQGFYTGEI 47
GVG+TT M + + LK + SLK + GFY GE
Sbjct: 244 GVGRTTAFMVMTDMLKNPSVSLKDILYRQHEIGGFYYGEF 283
>pdb|2PT0|A Chain A, Structure Of Selenomonas Ruminantium Ptp-Like Phytase With
The Active Site Cysteine Oxidized To Cysteine-Sulfonic
Acid
pdb|2PT0|B Chain B, Structure Of Selenomonas Ruminantium Ptp-Like Phytase With
The Active Site Cysteine Oxidized To Cysteine-Sulfonic
Acid
Length = 340
Score = 26.9 bits (58), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 8/40 (20%)
Query: 16 GVGKTTLIMRVLESLKASNPSLK--------VQGFYTGEI 47
GVG+TT M + + LK + SLK + GFY GE
Sbjct: 249 GVGRTTAFMVMTDMLKNPSVSLKDILYRQHEIGGFYYGEF 288
>pdb|2PSZ|A Chain A, Structure Of The Ptp-like Phytase Expressed By Selenomonas
Ruminantium At Low Ionic Strength
pdb|2PSZ|B Chain B, Structure Of The Ptp-like Phytase Expressed By Selenomonas
Ruminantium At Low Ionic Strength
pdb|3D1H|A Chain A, Structure Of The Ptp-Like Phytase Expressed By Selenomonas
Ruminantium At An Ionic Strength Of 500 Mm
pdb|3D1H|B Chain B, Structure Of The Ptp-Like Phytase Expressed By Selenomonas
Ruminantium At An Ionic Strength Of 500 Mm
pdb|3D1O|A Chain A, Structure Of The Ptp-Like Phytase Expressed By Selenomonas
Ruminantium At An Ionic Strength Of 300 Mm
pdb|3D1O|B Chain B, Structure Of The Ptp-Like Phytase Expressed By Selenomonas
Ruminantium At An Ionic Strength Of 300 Mm
pdb|3D1Q|A Chain A, Structure Of The Ptp-Like Phytase Expressed By Selenomonas
Ruminantium At An Ionic Strength Of 400 Mm
pdb|3D1Q|B Chain B, Structure Of The Ptp-Like Phytase Expressed By Selenomonas
Ruminantium At An Ionic Strength Of 400 Mm
Length = 340
Score = 26.9 bits (58), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 8/40 (20%)
Query: 16 GVGKTTLIMRVLESLKASNPSLK--------VQGFYTGEI 47
GVG+TT M + + LK + SLK + GFY GE
Sbjct: 249 GVGRTTAFMVMTDMLKNPSVSLKDILYRQHEIGGFYYGEF 288
>pdb|2XSZ|D Chain D, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|E Chain E, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|F Chain F, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 378
Score = 26.6 bits (57), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 5 AGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQG 41
AG+ L+ G PG GKT + ++L P + G
Sbjct: 84 AGRAVLIAGQPGTGKTAIAXGXAQALGPDTPFTAIAG 120
>pdb|2JFN|A Chain A, Crystal Structure Of Escherichia Coli Glutamate Racemase
In Complex With L-Glutamate And Activator Udp-Murnac-Ala
Length = 285
Score = 26.6 bits (57), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 91 VASFEAIALPELQVGADTDLFVIDEVGKMELFSSSFFPAVLRILESNIPVLASIPAPKSG 150
+ +F+ +A P G ++ F+++ V + +P L ++ N S+PA +
Sbjct: 50 IYAFDNVAFP---YGEKSEAFIVERVVAIVTAVQERYPLALAVVACNTASTVSLPALREK 106
Query: 151 RDIPAV 156
D P V
Sbjct: 107 FDFPVV 112
>pdb|3IIJ|A Chain A, The Structure Of Hcinap-Adp Complex At 1.76 Angstroms
Resolution.
pdb|3IIK|A Chain A, The Structure Of Hcinap-So4 Complex At 1.95 Angstroms
Resolution
pdb|3IIL|A Chain A, The Structure Of Hcinap-Mgadp-Pi Complex At 2.0
Angstroms Resolution
pdb|3IIM|A Chain A, The Structure Of Hcinap-Dadp Complex At 2.0 Angstroms
Resolution
Length = 180
Score = 26.6 bits (57), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 11/13 (84%), Positives = 12/13 (92%)
Query: 10 LVTGPPGVGKTTL 22
L+TG PGVGKTTL
Sbjct: 15 LLTGTPGVGKTTL 27
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp
From Thermus Thermophilus
Length = 254
Score = 26.6 bits (57), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 14/22 (63%)
Query: 1 MAAGAGKCFLVTGPPGVGKTTL 22
M A K L+ GPPGVGKT L
Sbjct: 44 MGARIPKGVLLVGPPGVGKTHL 65
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 26.6 bits (57), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 4 GAGKCFLVTGPPGVGKTTLIMRVLESLKASN 34
G+ L GPPGVGKTT + + L N
Sbjct: 44 GSMPHLLFAGPPGVGKTTAALALARELFGEN 74
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 26.6 bits (57), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 14/22 (63%)
Query: 1 MAAGAGKCFLVTGPPGVGKTTL 22
M A K L+ GPPGVGKT L
Sbjct: 68 MGARIPKGVLLVGPPGVGKTHL 89
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 26.6 bits (57), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 26/57 (45%)
Query: 6 GKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD 62
G+ + GP G GK+T++ + S+ +++ G ++ Q R VV D
Sbjct: 80 GQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQD 136
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,706,333
Number of Sequences: 62578
Number of extensions: 229063
Number of successful extensions: 1097
Number of sequences better than 100.0: 91
Number of HSP's better than 100.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 1033
Number of HSP's gapped (non-prelim): 92
length of query: 193
length of database: 14,973,337
effective HSP length: 93
effective length of query: 100
effective length of database: 9,153,583
effective search space: 915358300
effective search space used: 915358300
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)