Query 029421
Match_columns 193
No_of_seqs 223 out of 1302
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 12:38:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029421.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029421hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1126 GlnQ ABC-type polar am 100.0 5.8E-39 1.3E-43 244.7 7.0 157 1-163 23-206 (240)
2 COG1120 FepC ABC-type cobalami 100.0 5.1E-37 1.1E-41 242.9 10.4 178 1-185 23-234 (258)
3 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 1.3E-36 2.8E-41 239.6 10.2 156 1-163 25-209 (254)
4 COG1125 OpuBA ABC-type proline 100.0 1.4E-36 3.1E-41 236.5 8.1 156 1-163 22-206 (309)
5 COG1116 TauB ABC-type nitrate/ 100.0 3.5E-36 7.7E-41 234.7 10.2 152 1-162 24-200 (248)
6 COG1127 Ttg2A ABC-type transpo 100.0 4E-36 8.8E-41 232.3 8.7 172 1-180 29-235 (263)
7 COG3842 PotA ABC-type spermidi 100.0 3.5E-36 7.5E-41 247.6 8.3 158 1-164 26-208 (352)
8 COG3638 ABC-type phosphate/pho 100.0 5.8E-36 1.3E-40 230.9 7.8 177 1-185 25-242 (258)
9 COG1135 AbcC ABC-type metal io 100.0 1.1E-35 2.4E-40 237.2 8.7 157 1-164 27-213 (339)
10 COG3839 MalK ABC-type sugar tr 100.0 1.2E-35 2.6E-40 243.2 7.9 157 1-164 24-205 (338)
11 COG1118 CysA ABC-type sulfate/ 100.0 1E-34 2.2E-39 231.3 9.9 157 1-163 23-208 (345)
12 COG1131 CcmA ABC-type multidru 100.0 6.9E-35 1.5E-39 237.7 8.6 156 1-163 26-207 (293)
13 COG1136 SalX ABC-type antimicr 100.0 9.8E-35 2.1E-39 225.8 7.4 155 1-163 26-212 (226)
14 COG2884 FtsE Predicted ATPase 100.0 3.1E-34 6.7E-39 214.7 9.6 155 1-162 23-206 (223)
15 COG4555 NatA ABC-type Na+ tran 100.0 1.1E-34 2.3E-39 219.1 5.8 177 1-184 23-226 (245)
16 PRK13537 nodulation ABC transp 100.0 4.3E-34 9.4E-39 234.5 7.4 156 1-163 28-208 (306)
17 COG0411 LivG ABC-type branched 100.0 1.5E-34 3.2E-39 224.3 1.6 173 1-179 25-238 (250)
18 COG4152 ABC-type uncharacteriz 100.0 5.4E-34 1.2E-38 220.9 4.3 153 1-162 23-199 (300)
19 PRK11650 ugpC glycerol-3-phosp 100.0 1.7E-33 3.7E-38 235.0 7.6 156 1-163 25-205 (356)
20 PRK13536 nodulation factor exp 100.0 2.1E-33 4.6E-38 233.1 7.7 156 1-163 62-242 (340)
21 TIGR01188 drrA daunorubicin re 100.0 2.2E-33 4.8E-38 230.0 6.6 156 1-163 14-194 (302)
22 COG1122 CbiO ABC-type cobalt t 100.0 5.7E-33 1.2E-37 218.9 8.6 156 1-163 25-209 (235)
23 TIGR03265 PhnT2 putative 2-ami 100.0 2.3E-33 4.9E-38 234.0 6.3 156 1-163 25-205 (353)
24 PRK11432 fbpC ferric transport 100.0 3.4E-33 7.4E-38 232.7 7.1 156 1-163 27-207 (351)
25 cd03261 ABC_Org_Solvent_Resist 100.0 4.9E-33 1.1E-37 220.3 7.2 157 1-163 21-207 (235)
26 TIGR02314 ABC_MetN D-methionin 100.0 7.4E-33 1.6E-37 229.9 8.2 156 1-163 26-211 (343)
27 PRK10851 sulfate/thiosulfate t 100.0 9E-33 1.9E-37 230.5 8.7 157 1-163 23-207 (353)
28 cd03259 ABC_Carb_Solutes_like 100.0 5.4E-33 1.2E-37 217.0 6.9 156 1-163 21-201 (213)
29 TIGR00960 3a0501s02 Type II (G 100.0 4E-33 8.7E-38 218.1 6.1 156 1-163 24-208 (216)
30 cd03226 ABC_cobalt_CbiO_domain 100.0 1E-32 2.2E-37 214.3 8.2 151 1-163 21-196 (205)
31 COG1124 DppF ABC-type dipeptid 100.0 1E-32 2.3E-37 213.9 8.0 157 1-163 28-212 (252)
32 PRK09452 potA putrescine/sperm 100.0 8E-33 1.7E-37 232.1 7.9 156 1-163 35-215 (375)
33 TIGR01186 proV glycine betaine 100.0 7E-33 1.5E-37 231.3 7.4 156 1-163 14-200 (363)
34 cd03262 ABC_HisP_GlnQ_permease 100.0 1.1E-32 2.4E-37 215.1 7.1 157 1-163 21-205 (213)
35 TIGR03258 PhnT 2-aminoethylpho 100.0 9.1E-33 2E-37 230.9 6.7 156 1-163 26-209 (362)
36 cd03298 ABC_ThiQ_thiamine_tran 100.0 2.9E-32 6.3E-37 212.5 8.8 156 1-163 19-199 (211)
37 COG1137 YhbG ABC-type (unclass 100.0 8E-34 1.7E-38 214.1 -0.0 173 1-179 25-227 (243)
38 cd03301 ABC_MalK_N The N-termi 100.0 2.1E-32 4.6E-37 213.5 7.5 156 1-163 21-201 (213)
39 TIGR03522 GldA_ABC_ATP gliding 100.0 2E-32 4.4E-37 224.2 7.5 156 1-163 23-202 (301)
40 cd03296 ABC_CysA_sulfate_impor 100.0 3.4E-32 7.4E-37 216.0 8.3 157 1-163 23-207 (239)
41 TIGR02673 FtsE cell division A 100.0 1.9E-32 4E-37 214.0 6.7 156 1-163 23-207 (214)
42 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 2.9E-32 6.3E-37 213.5 7.6 155 1-163 25-210 (218)
43 PRK09536 btuD corrinoid ABC tr 100.0 6.6E-32 1.4E-36 228.0 10.0 157 1-163 24-209 (402)
44 TIGR01288 nodI ATP-binding ABC 100.0 2.3E-32 4.9E-37 224.1 7.0 156 1-163 25-205 (303)
45 PRK11607 potG putrescine trans 100.0 5E-32 1.1E-36 227.6 8.7 156 1-163 40-220 (377)
46 cd03225 ABC_cobalt_CbiO_domain 100.0 2.5E-32 5.5E-37 212.8 6.4 156 1-163 22-204 (211)
47 PRK11000 maltose/maltodextrin 100.0 3.1E-32 6.8E-37 228.6 7.3 156 1-163 24-204 (369)
48 cd03266 ABC_NatA_sodium_export 100.0 1.9E-32 4.2E-37 214.5 5.6 156 1-163 26-206 (218)
49 cd03219 ABC_Mj1267_LivG_branch 100.0 4.1E-32 8.9E-37 215.0 7.3 157 1-163 21-213 (236)
50 cd03235 ABC_Metallic_Cations A 100.0 4E-32 8.7E-37 212.1 7.0 154 1-163 20-202 (213)
51 cd03269 ABC_putative_ATPase Th 100.0 3.2E-32 7E-37 212.2 6.1 154 1-163 21-198 (210)
52 TIGR02315 ABC_phnC phosphonate 100.0 1.7E-31 3.6E-36 212.4 10.1 157 1-163 23-216 (243)
53 cd03268 ABC_BcrA_bacitracin_re 100.0 4E-32 8.7E-37 211.3 6.3 152 1-163 21-196 (208)
54 COG4175 ProV ABC-type proline/ 100.0 5E-32 1.1E-36 216.7 6.9 164 1-171 49-247 (386)
55 cd03293 ABC_NrtD_SsuB_transpor 100.0 5.3E-32 1.1E-36 212.4 6.9 153 1-163 25-202 (220)
56 cd03292 ABC_FtsE_transporter F 100.0 3.7E-32 8E-37 212.3 5.9 156 1-163 22-206 (214)
57 PRK09493 glnQ glutamine ABC tr 100.0 5.9E-32 1.3E-36 214.8 7.1 157 1-163 22-206 (240)
58 cd03265 ABC_DrrA DrrA is the A 100.0 8.1E-32 1.8E-36 211.4 7.6 156 1-163 21-202 (220)
59 PRK13637 cbiO cobalt transport 100.0 7E-32 1.5E-36 219.7 7.1 156 1-163 28-215 (287)
60 TIGR01277 thiQ thiamine ABC tr 100.0 1.4E-31 3E-36 209.1 8.3 156 1-163 19-199 (213)
61 cd03218 ABC_YhbG The ABC trans 100.0 8.4E-32 1.8E-36 212.7 7.0 156 1-163 21-203 (232)
62 cd03263 ABC_subfamily_A The AB 100.0 6.9E-32 1.5E-36 211.6 6.4 156 1-163 23-202 (220)
63 PRK10771 thiQ thiamine transpo 100.0 1.8E-31 3.9E-36 211.0 8.8 156 1-163 20-200 (232)
64 PRK11153 metN DL-methionine tr 100.0 7E-32 1.5E-36 224.6 6.7 156 1-163 26-211 (343)
65 cd03256 ABC_PhnC_transporter A 100.0 1.2E-31 2.6E-36 212.9 7.7 157 1-163 22-215 (241)
66 PRK11124 artP arginine transpo 100.0 1.4E-31 3.1E-36 212.8 8.0 157 1-163 23-211 (242)
67 cd03258 ABC_MetN_methionine_tr 100.0 8E-32 1.7E-36 213.1 6.6 156 1-163 26-211 (233)
68 PRK13647 cbiO cobalt transport 100.0 8.4E-32 1.8E-36 217.9 6.5 156 1-163 26-208 (274)
69 PRK10908 cell division protein 100.0 1E-31 2.3E-36 211.0 6.7 156 1-163 23-207 (222)
70 COG1117 PstB ABC-type phosphat 100.0 2E-31 4.3E-36 203.0 7.7 156 1-163 28-218 (253)
71 PRK11264 putative amino-acid A 100.0 1.4E-31 3.1E-36 213.7 7.2 157 1-163 24-214 (250)
72 PRK10895 lipopolysaccharide AB 100.0 1.9E-31 4.1E-36 212.0 7.9 157 1-163 24-207 (241)
73 cd03224 ABC_TM1139_LivF_branch 100.0 1.7E-31 3.6E-36 209.6 7.4 154 1-163 21-202 (222)
74 PRK13651 cobalt transporter AT 100.0 9.9E-32 2.2E-36 220.4 6.3 156 1-163 28-235 (305)
75 PRK11831 putative ABC transpor 100.0 1.4E-31 3.1E-36 216.1 6.9 157 1-163 28-214 (269)
76 PRK11248 tauB taurine transpor 100.0 2.6E-31 5.6E-36 213.0 8.3 152 1-162 22-198 (255)
77 cd03260 ABC_PstB_phosphate_tra 100.0 3.5E-31 7.6E-36 208.6 8.8 157 1-163 21-210 (227)
78 PRK10070 glycine betaine trans 100.0 1.7E-31 3.7E-36 225.4 7.4 156 1-163 49-235 (400)
79 PRK13641 cbiO cobalt transport 100.0 1.2E-31 2.6E-36 218.4 6.2 156 1-163 28-215 (287)
80 PRK10619 histidine/lysine/argi 100.0 1.9E-31 4.1E-36 213.9 6.8 157 1-163 26-222 (257)
81 COG3840 ThiQ ABC-type thiamine 100.0 7.5E-31 1.6E-35 195.5 9.4 156 1-163 20-200 (231)
82 PRK13643 cbiO cobalt transport 100.0 3E-31 6.4E-36 216.1 7.9 156 1-163 27-214 (288)
83 PRK11629 lolD lipoprotein tran 100.0 2.3E-31 4.9E-36 210.6 7.0 154 1-162 30-214 (233)
84 cd03294 ABC_Pro_Gly_Bertaine T 100.0 2.7E-31 5.9E-36 214.4 7.1 156 1-163 45-231 (269)
85 PRK15079 oligopeptide ABC tran 100.0 1.6E-31 3.5E-36 221.3 5.7 157 1-163 42-232 (331)
86 PRK11144 modC molybdate transp 100.0 7.1E-31 1.5E-35 219.2 9.5 150 1-163 19-199 (352)
87 COG0410 LivF ABC-type branched 100.0 5.9E-31 1.3E-35 202.8 8.1 155 1-163 24-207 (237)
88 PRK13634 cbiO cobalt transport 100.0 2.4E-31 5.3E-36 216.8 6.3 156 1-163 28-216 (290)
89 TIGR03608 L_ocin_972_ABC putat 100.0 3.1E-31 6.7E-36 205.9 6.4 155 1-163 19-203 (206)
90 PRK13646 cbiO cobalt transport 100.0 2.5E-31 5.4E-36 216.4 6.0 156 1-163 28-216 (286)
91 TIGR02211 LolD_lipo_ex lipopro 100.0 4.4E-31 9.4E-36 207.2 7.2 154 1-162 26-210 (221)
92 TIGR03411 urea_trans_UrtD urea 100.0 6.2E-31 1.3E-35 209.1 8.0 157 1-163 23-212 (242)
93 cd03257 ABC_NikE_OppD_transpor 100.0 4.8E-31 1E-35 207.8 7.3 157 1-163 26-216 (228)
94 TIGR02769 nickel_nikE nickel i 100.0 4.6E-31 1E-35 212.6 7.3 157 1-163 32-221 (265)
95 TIGR01166 cbiO cobalt transpor 100.0 1.9E-31 4.2E-36 204.8 4.8 148 1-155 13-189 (190)
96 TIGR03415 ABC_choXWV_ATP choli 100.0 5.3E-31 1.2E-35 221.1 7.9 156 1-163 45-235 (382)
97 TIGR00972 3a0107s01c2 phosphat 100.0 4.7E-31 1E-35 210.4 7.2 157 1-163 22-213 (247)
98 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 1.5E-30 3.2E-35 206.3 10.0 155 1-163 22-202 (236)
99 TIGR01184 ntrCD nitrate transp 100.0 5E-31 1.1E-35 208.3 7.2 154 1-163 6-185 (230)
100 TIGR02142 modC_ABC molybdenum 100.0 6.8E-31 1.5E-35 219.5 8.1 154 1-163 18-202 (354)
101 cd03264 ABC_drug_resistance_li 100.0 2.7E-31 5.8E-36 207.1 5.3 155 1-163 21-199 (211)
102 cd03295 ABC_OpuCA_Osmoprotecti 100.0 6E-31 1.3E-35 209.3 7.1 156 1-163 22-206 (242)
103 PRK13636 cbiO cobalt transport 100.0 4.4E-31 9.6E-36 214.6 6.5 156 1-163 27-212 (283)
104 TIGR03005 ectoine_ehuA ectoine 100.0 5.4E-31 1.2E-35 210.7 6.8 157 1-163 21-217 (252)
105 PRK10584 putative ABC transpor 100.0 6.7E-31 1.4E-35 207.2 7.1 154 1-162 31-215 (228)
106 PRK11308 dppF dipeptide transp 100.0 4.6E-31 9.9E-36 218.3 6.4 157 1-163 36-225 (327)
107 PRK13639 cbiO cobalt transport 100.0 5E-31 1.1E-35 213.5 6.4 156 1-163 23-207 (275)
108 TIGR03740 galliderm_ABC gallid 100.0 1.7E-30 3.7E-35 204.3 9.2 150 1-163 21-194 (223)
109 TIGR03771 anch_rpt_ABC anchore 100.0 1.8E-30 3.9E-35 204.2 9.2 154 1-163 1-183 (223)
110 PRK13644 cbiO cobalt transport 100.0 6.1E-31 1.3E-35 212.9 6.6 155 1-163 23-205 (274)
111 PRK13650 cbiO cobalt transport 100.0 6.5E-31 1.4E-35 213.2 6.6 155 1-163 28-210 (279)
112 TIGR03410 urea_trans_UrtE urea 100.0 9.2E-31 2E-35 206.6 7.2 153 1-163 21-202 (230)
113 PRK13543 cytochrome c biogenes 100.0 1.2E-30 2.5E-35 204.1 7.7 152 1-163 32-207 (214)
114 PRK13635 cbiO cobalt transport 100.0 8.9E-31 1.9E-35 212.4 7.2 155 1-163 28-210 (279)
115 PRK13638 cbiO cobalt transport 100.0 5.9E-31 1.3E-35 212.6 6.1 156 1-163 22-206 (271)
116 PRK11231 fecE iron-dicitrate t 100.0 1.2E-30 2.6E-35 209.0 7.9 157 1-163 23-208 (255)
117 PRK13631 cbiO cobalt transport 100.0 1.6E-30 3.4E-35 214.5 8.7 156 1-163 47-246 (320)
118 PRK15112 antimicrobial peptide 100.0 6.9E-31 1.5E-35 211.8 6.5 157 1-163 34-220 (267)
119 PRK11247 ssuB aliphatic sulfon 100.0 1.9E-30 4.2E-35 208.1 8.8 147 1-163 33-204 (257)
120 PRK11022 dppD dipeptide transp 100.0 7.9E-31 1.7E-35 216.8 6.7 157 1-163 28-224 (326)
121 cd03230 ABC_DR_subfamily_A Thi 100.0 3.8E-30 8.2E-35 195.0 9.6 140 1-163 21-165 (173)
122 PRK13652 cbiO cobalt transport 100.0 8.5E-31 1.8E-35 212.4 6.3 156 1-163 25-208 (277)
123 cd03297 ABC_ModC_molybdenum_tr 100.0 1.1E-30 2.3E-35 204.2 6.6 153 1-163 19-202 (214)
124 TIGR02770 nickel_nikD nickel i 100.0 9.8E-31 2.1E-35 206.6 6.5 156 1-163 7-196 (230)
125 PRK13649 cbiO cobalt transport 100.0 8.8E-31 1.9E-35 212.5 6.2 156 1-163 28-215 (280)
126 cd03215 ABC_Carb_Monos_II This 100.0 2.4E-30 5.2E-35 197.6 8.2 144 1-163 21-174 (182)
127 cd03231 ABC_CcmA_heme_exporter 100.0 2.4E-30 5.2E-35 200.5 8.3 150 1-163 21-195 (201)
128 cd03300 ABC_PotA_N PotA is an 100.0 1.4E-30 3E-35 206.0 7.0 156 1-163 21-201 (232)
129 PRK10575 iron-hydroxamate tran 100.0 1.9E-30 4.1E-35 209.1 7.9 157 1-163 32-218 (265)
130 TIGR03873 F420-0_ABC_ATP propo 100.0 1.7E-30 3.8E-35 208.2 7.7 157 1-163 22-207 (256)
131 COG4604 CeuD ABC-type enteroch 100.0 1.5E-30 3.3E-35 196.1 6.8 180 1-188 22-234 (252)
132 cd03229 ABC_Class3 This class 100.0 4.5E-30 9.7E-35 195.5 9.5 142 1-163 21-171 (178)
133 PRK13548 hmuV hemin importer A 100.0 2.4E-30 5.2E-35 207.7 8.4 156 1-163 23-211 (258)
134 COG3845 ABC-type uncharacteriz 100.0 5.4E-30 1.2E-34 215.1 10.8 157 1-163 25-210 (501)
135 PRK11300 livG leucine/isoleuci 100.0 1.9E-30 4.2E-35 207.7 7.7 157 1-163 26-224 (255)
136 PRK10253 iron-enterobactin tra 100.0 2.1E-30 4.5E-35 208.8 7.9 157 1-163 28-214 (265)
137 PRK11614 livF leucine/isoleuci 100.0 1.3E-30 2.9E-35 206.6 6.5 154 1-163 26-207 (237)
138 TIGR00968 3a0106s01 sulfate AB 100.0 2.2E-30 4.8E-35 205.5 7.4 156 1-163 21-201 (237)
139 PRK10762 D-ribose transporter 100.0 3.3E-30 7.1E-35 224.4 9.1 157 1-163 25-211 (501)
140 COG0444 DppD ABC-type dipeptid 100.0 1.1E-30 2.5E-35 210.2 5.6 173 1-179 26-242 (316)
141 cd03267 ABC_NatA_like Similar 100.0 2E-30 4.3E-35 205.7 6.7 156 1-163 42-224 (236)
142 PRK09473 oppD oligopeptide tra 100.0 1.5E-30 3.3E-35 215.4 6.2 157 1-163 37-232 (330)
143 TIGR02324 CP_lyasePhnL phospho 100.0 2.7E-30 5.8E-35 203.2 7.3 156 1-163 29-219 (224)
144 PRK14241 phosphate transporter 100.0 3.5E-30 7.6E-35 206.7 8.0 157 1-163 25-217 (258)
145 PRK14250 phosphate ABC transpo 100.0 4.5E-30 9.6E-35 204.2 8.4 152 1-163 24-202 (241)
146 PRK13645 cbiO cobalt transport 100.0 1.9E-30 4.1E-35 211.5 6.4 156 1-163 32-221 (289)
147 PRK13538 cytochrome c biogenes 100.0 2.1E-30 4.5E-35 201.3 6.3 151 1-161 22-197 (204)
148 PRK15056 manganese/iron transp 100.0 8E-30 1.7E-34 206.2 9.6 156 1-163 28-212 (272)
149 TIGR02982 heterocyst_DevA ABC 100.0 2.4E-30 5.1E-35 203.1 6.2 156 1-163 26-211 (220)
150 PRK14273 phosphate ABC transpo 100.0 4.1E-30 8.9E-35 205.8 7.4 157 1-163 28-219 (254)
151 cd03299 ABC_ModC_like Archeal 100.0 3.1E-30 6.8E-35 204.4 6.7 156 1-163 20-200 (235)
152 PRK14242 phosphate transporter 100.0 3.9E-30 8.4E-35 205.8 7.0 157 1-163 27-218 (253)
153 cd03237 ABC_RNaseL_inhibitor_d 100.0 2E-29 4.4E-34 201.0 10.9 141 2-163 21-186 (246)
154 PRK14247 phosphate ABC transpo 100.0 7.1E-30 1.5E-34 204.0 8.2 157 1-163 24-215 (250)
155 PRK09984 phosphonate/organopho 100.0 1.2E-29 2.5E-34 204.1 9.5 157 1-163 25-223 (262)
156 PRK14256 phosphate ABC transpo 100.0 7.9E-30 1.7E-34 203.9 8.3 157 1-163 25-217 (252)
157 PRK13549 xylose transporter AT 100.0 8.2E-30 1.8E-34 222.1 9.0 157 1-163 26-213 (506)
158 cd03246 ABCC_Protease_Secretio 100.0 1.5E-29 3.3E-34 191.7 9.3 138 1-163 23-165 (173)
159 PRK09700 D-allose transporter 100.0 8.7E-30 1.9E-34 222.2 9.1 157 1-163 26-215 (510)
160 PRK10744 pstB phosphate transp 100.0 8.2E-30 1.8E-34 204.8 8.1 157 1-163 34-225 (260)
161 COG4181 Predicted ABC-type tra 100.0 2.7E-29 5.8E-34 185.6 10.2 154 1-162 31-215 (228)
162 PRK13633 cobalt transporter AT 100.0 4.7E-30 1E-34 208.3 6.7 155 1-163 31-214 (280)
163 cd03216 ABC_Carb_Monos_I This 100.0 2.2E-29 4.8E-34 189.1 9.8 127 1-163 21-152 (163)
164 PRK09700 D-allose transporter 100.0 1.5E-29 3.3E-34 220.7 10.2 157 1-163 284-479 (510)
165 PRK13632 cbiO cobalt transport 100.0 4.9E-30 1.1E-34 207.3 6.3 155 1-163 30-212 (271)
166 PRK10982 galactose/methyl gala 100.0 1.1E-29 2.4E-34 220.6 8.9 157 1-163 19-204 (491)
167 PRK14267 phosphate ABC transpo 100.0 7.3E-30 1.6E-34 204.2 7.2 157 1-163 25-218 (253)
168 TIGR01978 sufC FeS assembly AT 100.0 7.1E-30 1.5E-34 203.0 6.9 157 1-163 21-215 (243)
169 PRK15439 autoinducer 2 ABC tra 100.0 1.3E-29 2.8E-34 221.1 9.1 152 1-163 32-210 (510)
170 cd03234 ABCG_White The White s 100.0 7.2E-30 1.6E-34 201.1 6.5 156 1-163 28-214 (226)
171 cd03228 ABCC_MRP_Like The MRP 100.0 2.1E-29 4.7E-34 190.5 8.7 138 1-163 23-164 (171)
172 PRK14268 phosphate ABC transpo 100.0 6.4E-30 1.4E-34 205.2 6.2 156 1-163 33-223 (258)
173 PRK15093 antimicrobial peptide 100.0 7.3E-30 1.6E-34 211.5 6.4 157 1-163 28-229 (330)
174 PRK10419 nikE nickel transport 100.0 1.4E-29 3E-34 204.4 7.6 157 1-163 33-222 (268)
175 PRK13640 cbiO cobalt transport 100.0 9.3E-30 2E-34 206.7 6.6 155 1-163 28-213 (282)
176 PRK13648 cbiO cobalt transport 100.0 1E-29 2.2E-34 205.3 6.6 155 1-163 30-212 (269)
177 PRK11701 phnK phosphonate C-P 100.0 1E-29 2.2E-34 204.0 6.6 157 1-163 27-222 (258)
178 PRK14274 phosphate ABC transpo 100.0 1.8E-29 3.9E-34 202.7 7.8 157 1-163 33-224 (259)
179 PRK14235 phosphate transporter 100.0 1.7E-29 3.7E-34 203.7 7.8 157 1-163 40-232 (267)
180 PRK14259 phosphate ABC transpo 100.0 2E-29 4.3E-34 203.6 8.1 155 1-163 34-223 (269)
181 COG4525 TauB ABC-type taurine 100.0 3.1E-29 6.7E-34 188.9 8.4 152 1-162 26-202 (259)
182 PRK13540 cytochrome c biogenes 100.0 1.3E-29 2.8E-34 196.2 6.5 149 1-162 22-195 (200)
183 PRK03695 vitamin B12-transport 100.0 1.5E-29 3.3E-34 202.0 7.1 154 1-163 17-203 (248)
184 PRK14240 phosphate transporter 100.0 1.7E-29 3.6E-34 201.8 7.3 157 1-163 24-215 (250)
185 PRK11288 araG L-arabinose tran 100.0 2.3E-29 5E-34 219.1 8.8 157 1-163 25-210 (501)
186 cd03251 ABCC_MsbA MsbA is an e 100.0 2.1E-29 4.6E-34 199.2 7.9 155 1-163 23-206 (234)
187 PRK14269 phosphate ABC transpo 100.0 2.1E-29 4.6E-34 200.8 7.9 156 1-163 23-211 (246)
188 PRK14245 phosphate ABC transpo 100.0 1.7E-29 3.7E-34 201.8 7.3 157 1-163 24-215 (250)
189 PRK13539 cytochrome c biogenes 100.0 1.4E-29 3E-34 197.1 6.5 146 1-158 23-192 (207)
190 TIGR02323 CP_lyasePhnK phospho 100.0 1.2E-29 2.7E-34 202.9 6.3 157 1-163 24-219 (253)
191 PRK14262 phosphate ABC transpo 100.0 2.1E-29 4.5E-34 201.3 7.5 157 1-163 24-215 (250)
192 cd03222 ABC_RNaseL_inhibitor T 100.0 1.6E-28 3.5E-33 186.4 11.9 146 1-190 20-173 (177)
193 PRK13642 cbiO cobalt transport 100.0 1.5E-29 3.3E-34 205.0 6.7 155 1-163 28-210 (277)
194 PRK14270 phosphate ABC transpo 100.0 2.4E-29 5.3E-34 201.0 7.7 157 1-163 25-216 (251)
195 PRK10418 nikD nickel transport 100.0 2.6E-29 5.6E-34 201.3 7.8 154 1-163 24-211 (254)
196 PRK14263 phosphate ABC transpo 100.0 3.6E-29 7.7E-34 201.3 8.7 155 1-163 29-218 (261)
197 PRK14248 phosphate ABC transpo 100.0 2.6E-29 5.7E-34 202.7 7.9 157 1-163 42-233 (268)
198 PRK14249 phosphate ABC transpo 100.0 3.7E-29 8E-34 200.0 8.6 156 1-163 25-216 (251)
199 COG1123 ATPase components of v 100.0 1.8E-29 4E-34 216.3 7.3 158 1-164 312-501 (539)
200 PRK13549 xylose transporter AT 100.0 3.6E-29 7.8E-34 218.1 9.2 157 1-163 283-475 (506)
201 PRK14237 phosphate transporter 100.0 3.2E-29 6.8E-34 202.2 8.2 157 1-163 41-232 (267)
202 cd03248 ABCC_TAP TAP, the Tran 100.0 2.3E-29 5E-34 198.1 7.1 156 1-163 35-218 (226)
203 PRK10261 glutathione transport 100.0 2.9E-29 6.3E-34 223.3 8.6 157 1-163 345-534 (623)
204 cd03214 ABC_Iron-Siderophores_ 100.0 1.6E-29 3.4E-34 192.8 5.8 144 1-163 20-168 (180)
205 PRK14251 phosphate ABC transpo 100.0 2.9E-29 6.2E-34 200.6 7.4 157 1-163 25-216 (251)
206 cd03245 ABCC_bacteriocin_expor 100.0 4.6E-29 1E-33 195.6 8.4 149 1-163 25-208 (220)
207 cd03247 ABCC_cytochrome_bd The 100.0 5.7E-29 1.2E-33 189.3 8.5 141 1-163 23-166 (178)
208 PRK14239 phosphate transporter 100.0 2.9E-29 6.3E-34 200.6 7.2 157 1-163 26-217 (252)
209 cd03213 ABCG_EPDR ABCG transpo 100.0 3.7E-29 8.1E-34 192.9 7.5 146 1-163 30-182 (194)
210 PRK14238 phosphate transporter 100.0 3E-29 6.5E-34 202.7 7.3 157 1-163 45-236 (271)
211 TIGR02633 xylG D-xylose ABC tr 100.0 4.2E-29 9E-34 217.4 8.6 157 1-163 22-211 (500)
212 PRK10247 putative ABC transpor 100.0 3.6E-29 7.7E-34 197.1 7.4 153 1-163 28-207 (225)
213 TIGR02633 xylG D-xylose ABC tr 100.0 3.5E-29 7.6E-34 217.9 7.9 157 1-163 281-473 (500)
214 PRK10762 D-ribose transporter 100.0 5.3E-29 1.1E-33 216.8 9.1 157 1-163 273-465 (501)
215 cd03252 ABCC_Hemolysin The ABC 100.0 3.3E-29 7.2E-34 198.6 7.1 155 1-163 23-206 (237)
216 PRK14272 phosphate ABC transpo 100.0 4.4E-29 9.5E-34 199.5 7.8 156 1-163 25-217 (252)
217 PRK14253 phosphate ABC transpo 100.0 4.6E-29 1E-33 199.1 7.9 156 1-163 24-214 (249)
218 PRK11288 araG L-arabinose tran 100.0 3.9E-29 8.5E-34 217.6 8.0 157 1-163 274-466 (501)
219 PRK13547 hmuV hemin importer A 100.0 4.4E-29 9.5E-34 201.8 7.7 157 1-163 22-225 (272)
220 TIGR01257 rim_protein retinal- 100.0 2.8E-29 6E-34 241.6 7.6 156 1-163 1960-2140(2272)
221 PRK14260 phosphate ABC transpo 100.0 3.7E-29 7.9E-34 200.9 7.1 157 1-163 28-219 (259)
222 COG1129 MglA ABC-type sugar tr 100.0 6.1E-29 1.3E-33 211.8 8.8 157 1-163 29-215 (500)
223 PRK14244 phosphate ABC transpo 100.0 4.3E-29 9.2E-34 199.6 7.4 157 1-163 26-218 (251)
224 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 3.9E-29 8.4E-34 198.3 7.0 155 1-163 24-207 (238)
225 PRK14261 phosphate ABC transpo 100.0 7E-29 1.5E-33 198.6 8.5 157 1-163 27-218 (253)
226 TIGR01189 ccmA heme ABC export 100.0 2.7E-29 5.9E-34 194.1 5.9 145 1-156 21-190 (198)
227 cd03254 ABCC_Glucan_exporter_l 100.0 5.2E-29 1.1E-33 196.4 7.5 155 1-163 24-207 (229)
228 PRK15439 autoinducer 2 ABC tra 100.0 6.4E-29 1.4E-33 216.7 8.8 156 1-162 284-472 (510)
229 PRK14275 phosphate ABC transpo 100.0 6.3E-29 1.4E-33 202.3 7.8 157 1-163 60-251 (286)
230 COG4148 ModC ABC-type molybdat 100.0 2.2E-28 4.8E-33 193.0 10.5 149 2-163 20-199 (352)
231 cd03244 ABCC_MRP_domain2 Domai 100.0 9.1E-29 2E-33 194.1 8.1 147 1-162 25-206 (221)
232 PRK14246 phosphate ABC transpo 100.0 6.5E-29 1.4E-33 199.3 7.0 157 1-163 31-222 (257)
233 COG4619 ABC-type uncharacteriz 100.0 5.9E-29 1.3E-33 183.3 6.0 162 1-175 24-212 (223)
234 PRK09544 znuC high-affinity zi 100.0 1.1E-28 2.3E-33 197.4 7.9 140 1-163 25-191 (251)
235 PRK13541 cytochrome c biogenes 100.0 5.2E-29 1.1E-33 192.2 5.8 144 1-158 21-188 (195)
236 PRK10261 glutathione transport 100.0 7E-29 1.5E-33 220.9 7.3 157 1-163 37-239 (623)
237 PRK14266 phosphate ABC transpo 100.0 1.1E-28 2.5E-33 197.0 7.8 157 1-163 24-215 (250)
238 cd03253 ABCC_ATM1_transporter 100.0 1.2E-28 2.6E-33 195.2 7.8 156 1-163 22-205 (236)
239 PRK13546 teichoic acids export 100.0 4.2E-28 9.2E-33 195.2 10.9 168 1-188 45-240 (264)
240 PRK14271 phosphate ABC transpo 100.0 1.1E-28 2.3E-33 200.0 7.4 157 1-163 42-232 (276)
241 TIGR03269 met_CoM_red_A2 methy 100.0 1.6E-28 3.4E-33 214.7 9.0 155 1-163 305-498 (520)
242 cd03232 ABC_PDR_domain2 The pl 100.0 9.7E-29 2.1E-33 190.3 6.7 145 1-163 28-179 (192)
243 PRK14254 phosphate ABC transpo 100.0 1.5E-28 3.2E-33 200.0 7.7 155 1-163 60-249 (285)
244 PRK14243 phosphate transporter 100.0 2.1E-28 4.6E-33 197.0 8.4 155 1-163 31-220 (264)
245 PRK14236 phosphate transporter 100.0 1.5E-28 3.2E-33 198.7 7.5 157 1-163 46-237 (272)
246 COG4586 ABC-type uncharacteriz 100.0 5.2E-29 1.1E-33 195.9 4.5 152 1-163 45-227 (325)
247 COG1123 ATPase components of v 100.0 6.8E-29 1.5E-33 212.8 5.5 176 1-182 30-246 (539)
248 PRK15134 microcin C ABC transp 100.0 9.9E-29 2.1E-33 216.4 6.5 157 1-163 30-227 (529)
249 PRK10938 putative molybdenum t 100.0 1.1E-28 2.3E-33 214.4 6.7 156 1-163 24-205 (490)
250 COG4559 ABC-type hemin transpo 99.9 3.8E-28 8.2E-33 185.0 8.4 157 1-163 22-211 (259)
251 PRK14258 phosphate ABC transpo 99.9 2E-28 4.4E-33 196.9 7.3 157 1-163 28-221 (261)
252 cd03233 ABC_PDR_domain1 The pl 99.9 5.3E-28 1.1E-32 187.6 9.2 154 1-163 28-190 (202)
253 PRK14255 phosphate ABC transpo 99.9 2.3E-28 4.9E-33 195.5 7.4 156 1-163 26-217 (252)
254 TIGR01187 potA spermidine/putr 99.9 9.9E-29 2.1E-33 204.4 5.4 146 11-163 1-171 (325)
255 PRK15134 microcin C ABC transp 99.9 2.1E-28 4.5E-33 214.4 7.4 156 1-163 307-496 (529)
256 cd03217 ABC_FeS_Assembly ABC-t 99.9 7.6E-28 1.7E-32 186.4 9.6 145 1-163 21-175 (200)
257 cd03369 ABCC_NFT1 Domain 2 of 99.9 4.6E-28 1E-32 188.4 8.2 148 1-163 29-193 (207)
258 TIGR01257 rim_protein retinal- 99.9 2.1E-28 4.6E-33 235.6 7.6 156 1-163 951-1130(2272)
259 PRK10982 galactose/methyl gala 99.9 3.2E-28 6.9E-33 211.4 8.0 157 1-163 269-461 (491)
260 cd03288 ABCC_SUR2 The SUR doma 99.9 8.2E-28 1.8E-32 192.9 9.8 176 1-187 42-250 (257)
261 TIGR03269 met_CoM_red_A2 methy 99.9 5E-28 1.1E-32 211.6 9.1 156 1-163 21-239 (520)
262 cd03250 ABCC_MRP_domain1 Domai 99.9 9.8E-28 2.1E-32 186.2 9.8 143 1-163 26-197 (204)
263 PRK14265 phosphate ABC transpo 99.9 3.9E-28 8.4E-33 196.5 7.8 155 1-163 41-230 (274)
264 cd03223 ABCD_peroxisomal_ALDP 99.9 1E-27 2.2E-32 180.6 9.4 134 1-163 22-157 (166)
265 CHL00131 ycf16 sulfate ABC tra 99.9 4.8E-28 1E-32 193.5 7.7 157 1-163 28-222 (252)
266 COG4598 HisP ABC-type histidin 99.9 1.5E-28 3.3E-33 183.1 4.5 157 1-163 27-222 (256)
267 PRK09580 sufC cysteine desulfu 99.9 4E-28 8.8E-33 193.5 7.2 157 1-163 22-216 (248)
268 PRK14264 phosphate ABC transpo 99.9 6.6E-28 1.4E-32 197.9 8.0 157 1-163 66-269 (305)
269 PRK14252 phosphate ABC transpo 99.9 4.8E-28 1E-32 195.0 6.9 156 1-163 37-230 (265)
270 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.9 3.1E-28 6.6E-33 191.7 5.5 148 1-163 43-212 (224)
271 cd03290 ABCC_SUR1_N The SUR do 99.9 1.4E-27 3.1E-32 187.1 9.1 147 1-162 22-210 (218)
272 PRK14257 phosphate ABC transpo 99.9 1.1E-27 2.5E-32 198.2 8.8 156 1-163 103-294 (329)
273 COG2274 SunT ABC-type bacterio 99.9 1.8E-27 3.9E-32 212.3 9.4 179 1-188 494-703 (709)
274 cd03289 ABCC_CFTR2 The CFTR su 99.9 2.3E-27 5E-32 191.9 9.0 162 1-180 25-225 (275)
275 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.9 3.3E-27 7.2E-32 173.9 8.9 116 1-163 21-137 (144)
276 COG1134 TagH ABC-type polysacc 99.9 3.2E-27 7E-32 183.6 8.0 171 1-189 48-245 (249)
277 COG4674 Uncharacterized ABC-ty 99.9 6.6E-28 1.4E-32 181.6 3.9 173 1-179 26-234 (249)
278 cd03236 ABC_RNaseL_inhibitor_d 99.9 2.4E-27 5.2E-32 189.9 7.3 149 3-163 23-209 (255)
279 PRK13409 putative ATPase RIL; 99.9 1.1E-26 2.5E-31 205.0 11.1 140 1-163 360-524 (590)
280 PLN03211 ABC transporter G-25; 99.9 3.4E-27 7.3E-32 210.7 7.5 155 1-163 89-277 (659)
281 cd00267 ABC_ATPase ABC (ATP-bi 99.9 1.5E-26 3.2E-31 172.6 9.3 127 1-163 20-150 (157)
282 PRK13545 tagH teichoic acids e 99.9 1E-26 2.2E-31 200.0 9.4 165 1-183 45-235 (549)
283 COG4608 AppF ABC-type oligopep 99.9 5.8E-27 1.3E-31 185.2 6.7 139 1-167 34-184 (268)
284 PRK10790 putative multidrug tr 99.9 7.4E-27 1.6E-31 207.0 8.2 162 1-179 362-562 (592)
285 PRK11176 lipid transporter ATP 99.9 6.8E-27 1.5E-31 206.8 7.9 171 1-180 364-567 (582)
286 PRK15064 ABC transporter ATP-b 99.9 2.4E-26 5.2E-31 201.4 11.0 146 1-163 22-222 (530)
287 PRK11174 cysteine/glutathione 99.9 1.1E-26 2.5E-31 205.6 8.4 169 1-180 371-572 (588)
288 TIGR03375 type_I_sec_LssB type 99.9 1E-26 2.2E-31 209.5 8.2 172 1-182 486-690 (694)
289 PRK10938 putative molybdenum t 99.9 9.1E-27 2E-31 202.3 7.5 156 1-162 281-472 (490)
290 TIGR03797 NHPM_micro_ABC2 NHPM 99.9 1.5E-26 3.3E-31 208.1 8.9 161 1-180 474-673 (686)
291 COG1119 ModF ABC-type molybden 99.9 9.1E-27 2E-31 181.1 6.0 156 1-162 52-242 (257)
292 PRK10535 macrolide transporter 99.9 1.6E-26 3.5E-31 206.5 8.5 154 1-162 29-212 (648)
293 PRK13657 cyclic beta-1,2-gluca 99.9 2.1E-26 4.6E-31 203.9 8.9 155 1-163 356-539 (588)
294 KOG0059 Lipid exporter ABCA1 a 99.9 7.8E-27 1.7E-31 214.2 5.6 158 1-165 586-770 (885)
295 TIGR03796 NHPM_micro_ABC1 NHPM 99.9 2E-26 4.3E-31 208.1 7.9 162 1-180 500-700 (710)
296 TIGR02868 CydC thiol reductant 99.9 1.8E-26 3.8E-31 202.2 7.2 140 1-153 356-529 (529)
297 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 1.1E-25 2.4E-30 198.1 12.1 165 1-186 343-537 (552)
298 cd03291 ABCC_CFTR1 The CFTR su 99.9 9.1E-26 2E-30 183.2 10.6 145 1-163 58-228 (282)
299 COG4988 CydD ABC-type transpor 99.9 3.2E-26 6.8E-31 196.1 8.3 149 1-163 342-524 (559)
300 TIGR02857 CydD thiol reductant 99.9 2.7E-26 6E-31 200.9 8.1 156 1-163 343-526 (529)
301 PRK11160 cysteine/glutathione 99.9 3E-26 6.4E-31 202.5 8.1 164 1-180 361-562 (574)
302 PRK15064 ABC transporter ATP-b 99.9 5.8E-26 1.3E-30 199.0 9.8 140 1-163 340-505 (530)
303 TIGR02203 MsbA_lipidA lipid A 99.9 3.3E-26 7.1E-31 202.0 8.2 150 1-163 353-537 (571)
304 COG4136 ABC-type uncharacteriz 99.9 2.5E-26 5.4E-31 166.8 6.0 149 1-157 23-199 (213)
305 PRK10789 putative multidrug tr 99.9 5.2E-26 1.1E-30 200.8 8.9 155 1-163 336-519 (569)
306 COG4167 SapF ABC-type antimicr 99.9 6.3E-26 1.4E-30 169.6 7.7 157 1-163 34-220 (267)
307 TIGR01192 chvA glucan exporter 99.9 5.5E-26 1.2E-30 201.2 8.7 170 1-180 356-558 (585)
308 PRK15177 Vi polysaccharide exp 99.9 1E-25 2.2E-30 176.1 9.2 144 1-163 8-173 (213)
309 PRK11819 putative ABC transpor 99.9 1.9E-25 4E-30 196.8 11.8 143 1-163 345-512 (556)
310 COG0396 sufC Cysteine desulfur 99.9 4.8E-26 1.1E-30 175.3 7.1 176 1-185 25-238 (251)
311 PRK11819 putative ABC transpor 99.9 4E-26 8.6E-31 201.0 7.6 146 1-163 28-230 (556)
312 TIGR01846 type_I_sec_HlyB type 99.9 4.2E-26 9.1E-31 205.5 7.7 170 1-180 478-680 (694)
313 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 2.4E-25 5.1E-30 196.0 12.1 146 1-163 26-228 (552)
314 COG4161 ArtP ABC-type arginine 99.9 4.7E-26 1E-30 167.3 6.3 157 1-163 23-211 (242)
315 COG4987 CydC ABC-type transpor 99.9 3E-26 6.6E-31 194.2 6.2 164 1-180 359-561 (573)
316 TIGR01193 bacteriocin_ABC ABC- 99.9 6.8E-26 1.5E-30 204.6 8.1 171 1-181 495-698 (708)
317 TIGR00958 3a01208 Conjugate Tr 99.9 7E-26 1.5E-30 204.4 7.9 169 1-181 502-703 (711)
318 COG1101 PhnK ABC-type uncharac 99.9 5.5E-26 1.2E-30 173.5 5.9 163 1-169 27-229 (263)
319 TIGR02204 MsbA_rel ABC transpo 99.9 6.8E-26 1.5E-30 200.2 7.5 155 1-163 361-544 (576)
320 cd03238 ABC_UvrA The excision 99.9 2.9E-25 6.2E-30 168.5 9.4 138 1-162 16-157 (176)
321 TIGR01842 type_I_sec_PrtD type 99.9 1E-25 2.2E-30 198.0 8.0 155 1-163 339-523 (544)
322 PRK13409 putative ATPase RIL; 99.9 9.9E-26 2.2E-30 199.1 7.0 146 2-163 95-281 (590)
323 COG1132 MdlB ABC-type multidru 99.9 1.8E-25 3.8E-30 197.4 8.5 172 1-181 350-553 (567)
324 KOG0057 Mitochondrial Fe/S clu 99.9 4.3E-25 9.3E-30 187.5 10.3 163 1-180 373-574 (591)
325 TIGR00955 3a01204 The Eye Pigm 99.9 1.3E-25 2.9E-30 199.7 6.9 156 1-163 46-237 (617)
326 PRK11147 ABC transporter ATPas 99.9 2.5E-25 5.4E-30 198.6 8.4 142 1-162 340-506 (635)
327 PRK10636 putative ABC transpor 99.9 2.1E-25 4.6E-30 199.0 7.8 139 1-163 333-497 (638)
328 COG4133 CcmA ABC-type transpor 99.9 9.6E-26 2.1E-30 168.9 4.5 144 1-154 23-191 (209)
329 KOG0055 Multidrug/pheromone ex 99.9 2E-25 4.4E-30 204.2 7.2 172 1-181 374-577 (1228)
330 KOG0058 Peptide exporter, ABC 99.9 5.3E-25 1.2E-29 192.2 8.1 174 1-182 489-693 (716)
331 COG4172 ABC-type uncharacteriz 99.9 8.7E-25 1.9E-29 180.1 7.8 156 1-163 308-497 (534)
332 PRK10636 putative ABC transpor 99.9 8.6E-25 1.9E-29 195.1 8.1 146 1-163 22-216 (638)
333 COG4618 ArpD ABC-type protease 99.9 7.9E-25 1.7E-29 184.5 7.2 174 1-183 357-563 (580)
334 PLN03073 ABC transporter F fam 99.9 7.9E-25 1.7E-29 196.8 7.6 143 1-163 530-694 (718)
335 TIGR00956 3a01205 Pleiotropic 99.9 4.3E-25 9.2E-30 210.2 6.0 154 1-162 784-972 (1394)
336 PRK10522 multidrug transporter 99.9 2.1E-24 4.6E-29 189.8 9.7 144 1-162 344-518 (547)
337 COG4172 ABC-type uncharacteriz 99.9 1.5E-24 3.3E-29 178.7 6.4 174 1-180 31-247 (534)
338 TIGR00954 3a01203 Peroxysomal 99.9 3.8E-24 8.2E-29 191.6 9.1 145 1-163 473-648 (659)
339 PLN03140 ABC transporter G fam 99.9 9.9E-25 2.1E-29 207.7 5.5 155 1-162 901-1089(1470)
340 TIGR01194 cyc_pep_trnsptr cycl 99.9 2.1E-24 4.5E-29 190.1 6.8 146 1-163 363-540 (555)
341 PLN03232 ABC transporter C fam 99.9 2.2E-24 4.7E-29 206.8 7.4 163 1-180 1257-1458(1495)
342 PLN03130 ABC transporter C fam 99.9 2.9E-24 6.3E-29 206.6 8.0 164 1-181 1260-1462(1622)
343 KOG0061 Transporter, ABC super 99.9 2.4E-24 5.1E-29 190.9 5.8 146 2-148 52-231 (613)
344 PTZ00265 multidrug resistance 99.9 4.8E-24 1E-28 203.5 8.1 165 1-180 1189-1452(1466)
345 PRK11147 ABC transporter ATPas 99.9 1.1E-23 2.4E-28 188.0 9.4 146 1-163 24-223 (635)
346 TIGR00956 3a01205 Pleiotropic 99.9 6.4E-24 1.4E-28 202.3 7.9 157 1-163 82-281 (1394)
347 PTZ00265 multidrug resistance 99.9 5.2E-24 1.1E-28 203.3 7.1 155 1-162 406-648 (1466)
348 TIGR00957 MRP_assoc_pro multi 99.9 9.2E-24 2E-28 202.8 8.4 172 1-190 1307-1517(1522)
349 PLN03140 ABC transporter G fam 99.9 1.9E-23 4.1E-28 199.1 9.6 156 1-163 186-408 (1470)
350 COG0488 Uup ATPase components 99.9 7.7E-24 1.7E-28 183.8 6.1 146 1-163 24-220 (530)
351 PTZ00243 ABC transporter; Prov 99.9 1.5E-23 3.3E-28 201.3 8.1 163 1-180 1331-1533(1560)
352 COG4107 PhnK ABC-type phosphon 99.9 3.7E-23 8E-28 153.7 8.1 156 1-162 27-221 (258)
353 cd03278 ABC_SMC_barmotin Barmo 99.9 5.1E-23 1.1E-27 159.1 9.1 151 1-163 18-185 (197)
354 TIGR01271 CFTR_protein cystic 99.9 7.4E-23 1.6E-27 196.2 9.4 162 1-180 1240-1440(1490)
355 COG4778 PhnL ABC-type phosphon 99.9 4E-23 8.8E-28 152.8 3.9 156 1-163 32-222 (235)
356 COG0488 Uup ATPase components 99.9 5.1E-22 1.1E-26 172.5 9.2 138 1-162 343-505 (530)
357 KOG0055 Multidrug/pheromone ex 99.9 4E-22 8.6E-27 182.8 7.0 166 1-180 1011-1213(1228)
358 COG4615 PvdE ABC-type sideroph 99.9 1.8E-22 3.9E-27 166.1 4.2 161 1-181 344-540 (546)
359 COG4138 BtuD ABC-type cobalami 99.9 5.4E-22 1.2E-26 147.6 6.0 148 2-162 21-201 (248)
360 KOG0065 Pleiotropic drug resis 99.9 3.1E-22 6.6E-27 183.9 5.3 145 3-148 814-991 (1391)
361 TIGR01271 CFTR_protein cystic 99.9 8.2E-22 1.8E-26 189.1 8.3 145 1-163 447-617 (1490)
362 PF00005 ABC_tran: ABC transpo 99.9 1.4E-22 3E-27 147.4 1.7 61 1-61 6-68 (137)
363 PLN03073 ABC transporter F fam 99.8 1.1E-21 2.5E-26 176.5 6.5 153 1-163 198-411 (718)
364 TIGR00957 MRP_assoc_pro multi 99.8 5.2E-21 1.1E-25 184.0 9.3 139 1-162 659-830 (1522)
365 cd03273 ABC_SMC2_euk Eukaryoti 99.8 1.7E-20 3.7E-25 150.1 8.2 151 6-163 25-238 (251)
366 PTZ00243 ABC transporter; Prov 99.8 7.9E-21 1.7E-25 182.7 6.6 145 1-163 681-851 (1560)
367 KOG0056 Heavy metal exporter H 99.8 9.1E-21 2E-25 159.7 6.2 174 1-181 559-762 (790)
368 PLN03130 ABC transporter C fam 99.8 4.4E-20 9.5E-25 178.0 9.8 140 1-163 638-809 (1622)
369 cd03270 ABC_UvrA_I The excisio 99.8 1.3E-20 2.9E-25 148.5 5.0 53 104-163 152-208 (226)
370 COG1129 MglA ABC-type sugar tr 99.8 2.9E-20 6.2E-25 158.9 6.7 157 1-163 280-471 (500)
371 cd03240 ABC_Rad50 The catalyti 99.8 2.7E-20 5.8E-25 144.6 6.0 150 2-162 19-191 (204)
372 PLN03232 ABC transporter C fam 99.8 5.9E-20 1.3E-24 176.5 9.2 140 1-162 638-808 (1495)
373 cd03283 ABC_MutS-like MutS-lik 99.8 1.3E-19 2.7E-24 140.3 7.7 130 1-159 20-154 (199)
374 cd03279 ABC_sbcCD SbcCD and ot 99.8 1E-19 2.3E-24 142.2 6.7 152 5-163 27-203 (213)
375 cd03272 ABC_SMC3_euk Eukaryoti 99.8 1.8E-19 3.9E-24 143.2 7.8 51 106-163 179-230 (243)
376 COG4170 SapD ABC-type antimicr 99.8 5E-19 1.1E-23 135.5 6.4 161 1-167 28-233 (330)
377 KOG0927 Predicted transporter 99.8 8.1E-19 1.7E-23 149.2 8.3 163 1-186 411-602 (614)
378 cd03274 ABC_SMC4_euk Eukaryoti 99.8 3.1E-19 6.7E-24 139.4 5.3 50 107-163 149-199 (212)
379 KOG0054 Multidrug resistance-a 99.8 1.4E-18 3.1E-23 162.4 8.2 164 1-181 1161-1363(1381)
380 cd03275 ABC_SMC1_euk Eukaryoti 99.7 4.4E-18 9.5E-23 135.8 8.4 50 107-163 177-228 (247)
381 COG1245 Predicted ATPase, RNas 99.7 2.9E-18 6.4E-23 143.5 7.6 166 2-188 363-555 (591)
382 PF03266 NTPase_1: NTPase; In 99.7 2.2E-17 4.8E-22 124.4 11.7 165 8-182 1-167 (168)
383 COG5265 ATM1 ABC-type transpor 99.7 1.4E-18 3E-23 144.2 4.5 172 1-181 284-487 (497)
384 PRK13695 putative NTPase; Prov 99.7 2.9E-16 6.3E-21 118.9 15.1 166 8-187 2-173 (174)
385 COG4178 ABC-type uncharacteriz 99.7 1.3E-17 2.8E-22 145.3 8.6 141 1-162 414-582 (604)
386 cd03243 ABC_MutS_homologs The 99.7 1.6E-17 3.5E-22 128.8 8.2 132 1-162 24-159 (202)
387 cd03280 ABC_MutS2 MutS2 homolo 99.7 2.6E-17 5.7E-22 127.4 6.9 133 1-163 22-160 (200)
388 TIGR02858 spore_III_AA stage I 99.7 3.8E-17 8.1E-22 131.6 7.6 122 7-162 112-237 (270)
389 cd03271 ABC_UvrA_II The excisi 99.7 1.7E-17 3.8E-22 133.0 4.8 52 104-162 184-240 (261)
390 KOG0054 Multidrug resistance-a 99.7 1.2E-16 2.7E-21 149.6 8.8 154 1-179 542-730 (1381)
391 COG1618 Predicted nucleotide k 99.7 2.8E-15 6.1E-20 110.0 14.0 170 6-187 5-176 (179)
392 COG3845 ABC-type uncharacteriz 99.7 2.2E-16 4.8E-21 133.4 7.1 160 1-166 279-476 (501)
393 cd03276 ABC_SMC6_euk Eukaryoti 99.6 8.4E-16 1.8E-20 118.9 8.6 52 105-163 129-185 (198)
394 KOG0062 ATPase component of AB 99.6 8.8E-17 1.9E-21 136.2 2.9 51 104-162 213-264 (582)
395 cd03282 ABC_MSH4_euk MutS4 hom 99.6 7.9E-16 1.7E-20 119.5 7.6 138 1-167 24-165 (204)
396 KOG0066 eIF2-interacting prote 99.6 9E-16 2E-20 128.5 7.2 160 2-191 609-802 (807)
397 KOG0927 Predicted transporter 99.6 6.8E-16 1.5E-20 131.6 3.6 53 104-163 236-289 (614)
398 KOG0060 Long-chain acyl-CoA tr 99.6 5.8E-15 1.3E-19 126.8 8.5 141 1-155 456-629 (659)
399 cd03281 ABC_MSH5_euk MutS5 hom 99.6 3.7E-14 8.1E-19 110.8 11.4 124 7-160 30-161 (213)
400 PRK00635 excinuclease ABC subu 99.6 2.9E-15 6.3E-20 143.6 6.1 50 106-162 829-880 (1809)
401 cd03277 ABC_SMC5_euk Eukaryoti 99.6 1.3E-14 2.8E-19 113.5 8.2 60 105-172 146-209 (213)
402 COG1245 Predicted ATPase, RNas 99.6 2.8E-15 6E-20 125.9 4.6 169 3-190 97-314 (591)
403 PRK00349 uvrA excinuclease ABC 99.5 3.7E-15 8.1E-20 137.1 5.2 52 104-162 845-901 (943)
404 cd03227 ABC_Class2 ABC-type Cl 99.5 3.2E-14 7E-19 106.6 7.6 126 4-163 19-150 (162)
405 cd03239 ABC_SMC_head The struc 99.5 6.6E-14 1.4E-18 106.5 9.4 52 105-163 114-167 (178)
406 cd03284 ABC_MutS1 MutS1 homolo 99.5 5.1E-14 1.1E-18 110.3 8.5 123 7-162 31-161 (216)
407 KOG2355 Predicted ABC-type tra 99.5 4.2E-14 9.1E-19 108.1 5.9 153 1-162 35-217 (291)
408 cd03285 ABC_MSH2_euk MutS2 hom 99.5 5.9E-14 1.3E-18 110.4 5.5 50 105-163 107-162 (222)
409 smart00534 MUTSac ATPase domai 99.5 1E-13 2.2E-18 106.1 6.6 51 105-162 76-130 (185)
410 cd03287 ABC_MSH3_euk MutS3 hom 99.4 3.4E-13 7.4E-18 105.9 8.5 127 2-157 27-158 (222)
411 KOG0064 Peroxisomal long-chain 99.4 1.2E-13 2.7E-18 117.8 6.0 53 1-62 503-555 (728)
412 COG2401 ABC-type ATPase fused 99.4 1.1E-13 2.3E-18 115.4 5.0 136 1-160 404-575 (593)
413 KOG0062 ATPase component of AB 99.4 1.1E-13 2.4E-18 117.6 5.0 145 4-170 388-560 (582)
414 TIGR01069 mutS2 MutS2 family p 99.4 2.7E-13 5.8E-18 123.2 6.8 126 2-156 317-448 (771)
415 TIGR00630 uvra excinuclease AB 99.4 4.8E-13 1E-17 123.1 8.5 49 107-162 849-899 (924)
416 KOG0065 Pleiotropic drug resis 99.4 8.7E-13 1.9E-17 122.4 8.6 144 3-147 138-321 (1391)
417 cd03241 ABC_RecN RecN ATPase i 99.3 5.3E-12 1.1E-16 102.4 9.7 49 107-162 192-241 (276)
418 cd00820 PEPCK_HprK Phosphoenol 99.3 1.2E-12 2.7E-17 90.9 4.8 66 1-73 10-77 (107)
419 cd03286 ABC_MSH6_euk MutS6 hom 99.3 8E-12 1.7E-16 97.9 8.6 56 105-166 107-166 (218)
420 cd01130 VirB11-like_ATPase Typ 99.3 7.4E-11 1.6E-15 90.3 11.5 113 2-146 21-134 (186)
421 PRK07721 fliI flagellum-specif 99.3 1.1E-11 2.3E-16 106.1 7.5 143 1-162 153-323 (438)
422 PRK08533 flagellar accessory p 99.2 5.4E-12 1.2E-16 99.8 3.9 131 3-143 21-159 (230)
423 TIGR02788 VirB11 P-type DNA tr 99.2 7.8E-11 1.7E-15 97.0 10.3 39 2-40 140-178 (308)
424 PRK00409 recombination and DNA 99.2 4.2E-11 9E-16 109.3 8.3 53 106-164 406-461 (782)
425 COG3910 Predicted ATPase [Gene 99.2 4.5E-11 9.8E-16 90.3 6.6 58 106-173 145-204 (233)
426 TIGR03238 dnd_assoc_3 dnd syst 99.2 2.8E-11 6E-16 103.4 4.2 43 1-45 27-70 (504)
427 KOG0063 RNAse L inhibitor, ABC 99.1 6.4E-11 1.4E-15 99.3 5.3 139 6-163 367-527 (592)
428 KOG0066 eIF2-interacting prote 99.1 1.2E-11 2.6E-16 104.1 0.0 51 104-162 427-478 (807)
429 PF02463 SMC_N: RecF/RecN/SMC 99.1 1.3E-10 2.9E-15 90.9 5.7 51 105-162 156-207 (220)
430 PRK00635 excinuclease ABC subu 99.0 5E-10 1.1E-14 108.4 7.1 48 108-162 1721-1770(1809)
431 PTZ00132 GTP-binding nuclear p 99.0 2.1E-10 4.6E-15 89.4 3.5 33 104-136 167-205 (215)
432 cd03242 ABC_RecF RecF is a rec 99.0 1.1E-09 2.3E-14 88.6 7.7 46 106-160 209-255 (270)
433 cd01120 RecA-like_NTPases RecA 99.0 3.3E-10 7.2E-15 83.5 3.1 34 8-41 1-34 (165)
434 cd01131 PilT Pilus retraction 99.0 4.6E-09 1E-13 81.2 9.4 34 8-41 3-37 (198)
435 COG0178 UvrA Excinuclease ATPa 98.9 1.2E-09 2.7E-14 97.6 6.3 50 106-162 842-893 (935)
436 PRK06995 flhF flagellar biosyn 98.8 1.5E-08 3.4E-13 87.6 9.1 34 3-36 253-286 (484)
437 PRK10078 ribose 1,5-bisphospho 98.8 4.8E-09 1E-13 80.2 3.5 53 6-61 2-56 (186)
438 cd01124 KaiC KaiC is a circadi 98.8 2.6E-09 5.5E-14 81.2 1.8 44 105-154 93-141 (187)
439 smart00382 AAA ATPases associa 98.8 2.9E-08 6.2E-13 70.6 7.1 30 5-34 1-30 (148)
440 PRK06002 fliI flagellum-specif 98.7 9.7E-09 2.1E-13 87.9 4.8 60 2-61 161-229 (450)
441 PRK09825 idnK D-gluconate kina 98.7 1.2E-08 2.6E-13 77.5 4.7 36 5-44 2-37 (176)
442 TIGR01420 pilT_fam pilus retra 98.7 8E-08 1.7E-12 80.3 9.7 38 4-41 120-158 (343)
443 PRK09270 nucleoside triphospha 98.7 1.1E-08 2.4E-13 80.8 4.3 39 5-43 32-74 (229)
444 PF13555 AAA_29: P-loop contai 98.7 1E-08 2.3E-13 64.1 3.2 33 2-34 18-51 (62)
445 PRK00300 gmk guanylate kinase; 98.7 1.3E-08 2.9E-13 78.7 4.5 28 4-31 3-30 (205)
446 PRK06067 flagellar accessory p 98.7 1.3E-08 2.8E-13 80.5 4.5 25 3-27 22-46 (234)
447 TIGR02524 dot_icm_DotB Dot/Icm 98.7 1.5E-07 3.3E-12 79.0 11.1 29 4-32 132-160 (358)
448 TIGR00235 udk uridine kinase. 98.7 1.5E-08 3.2E-13 78.8 4.1 29 4-32 4-32 (207)
449 TIGR03881 KaiC_arch_4 KaiC dom 98.7 1.9E-08 4E-13 79.2 4.7 58 3-60 17-76 (229)
450 TIGR00554 panK_bact pantothena 98.7 1.8E-08 3.9E-13 82.1 4.4 38 6-43 62-101 (290)
451 PF13304 AAA_21: AAA domain; P 98.7 2E-08 4.3E-13 78.5 4.6 41 109-155 259-301 (303)
452 PRK05399 DNA mismatch repair p 98.7 7.1E-08 1.5E-12 89.2 8.6 51 105-162 684-738 (854)
453 PRK10416 signal recognition pa 98.7 2.3E-08 5E-13 82.6 4.7 57 4-60 112-176 (318)
454 PRK06793 fliI flagellum-specif 98.6 1.4E-08 3.1E-13 86.6 2.6 44 1-44 151-194 (432)
455 PRK13830 conjugal transfer pro 98.6 2E-07 4.3E-12 86.1 10.0 48 104-157 649-699 (818)
456 cd02025 PanK Pantothenate kina 98.6 3.9E-08 8.5E-13 77.3 3.9 36 8-43 1-41 (220)
457 PRK07960 fliI flagellum-specif 98.6 6.5E-08 1.4E-12 82.8 5.3 62 1-62 170-239 (455)
458 PRK13898 type IV secretion sys 98.6 2.8E-07 6.1E-12 85.0 9.6 49 104-158 639-690 (800)
459 PRK07196 fliI flagellum-specif 98.6 4.9E-08 1.1E-12 83.4 4.0 35 1-35 150-184 (434)
460 KOG0063 RNAse L inhibitor, ABC 98.6 5.9E-08 1.3E-12 81.8 4.1 53 104-162 228-282 (592)
461 TIGR02322 phosphon_PhnN phosph 98.5 9.7E-08 2.1E-12 72.3 4.7 33 6-39 1-33 (179)
462 cd02026 PRK Phosphoribulokinas 98.5 4.1E-08 8.9E-13 79.5 2.2 32 8-39 1-32 (273)
463 cd00009 AAA The AAA+ (ATPases 98.5 2.1E-07 4.6E-12 66.7 5.7 27 5-31 18-44 (151)
464 PRK01889 GTPase RsgA; Reviewed 98.5 1.2E-07 2.6E-12 79.7 4.9 57 3-60 192-248 (356)
465 cd02023 UMPK Uridine monophosp 98.5 1.2E-07 2.6E-12 73.0 4.4 34 8-43 1-34 (198)
466 PRK08149 ATP synthase SpaL; Va 98.5 1.5E-07 3.2E-12 80.4 5.2 61 1-61 146-215 (428)
467 PRK03846 adenylylsulfate kinas 98.5 1.2E-07 2.6E-12 73.2 4.3 55 4-60 22-77 (198)
468 PLN02796 D-glycerate 3-kinase 98.5 1.1E-07 2.5E-12 78.8 4.1 41 4-44 93-141 (347)
469 PRK14722 flhF flagellar biosyn 98.5 2E-07 4.4E-12 78.3 5.6 30 2-31 133-162 (374)
470 TIGR00606 rad50 rad50. This fa 98.5 1.9E-07 4.1E-12 90.1 5.9 54 7-60 29-87 (1311)
471 cd01136 ATPase_flagellum-secre 98.5 1.1E-07 2.5E-12 78.5 3.7 43 1-43 64-106 (326)
472 TIGR03498 FliI_clade3 flagella 98.5 1.4E-07 3E-12 80.5 4.2 44 1-44 135-178 (418)
473 TIGR00416 sms DNA repair prote 98.4 1.2E-07 2.7E-12 81.9 3.4 42 3-44 91-133 (454)
474 PRK06893 DNA replication initi 98.4 2.1E-06 4.6E-11 67.8 9.9 75 106-186 90-174 (229)
475 TIGR03263 guanyl_kin guanylate 98.4 3.7E-07 8E-12 69.1 4.9 26 6-31 1-26 (180)
476 PRK00098 GTPase RsgA; Reviewed 98.4 3.3E-07 7.1E-12 75.2 4.7 35 5-39 163-197 (298)
477 PRK07594 type III secretion sy 98.4 1.7E-07 3.7E-12 80.1 3.0 44 1-44 150-193 (433)
478 PRK09099 type III secretion sy 98.4 2.7E-07 5.9E-12 79.1 3.9 44 1-44 158-201 (441)
479 cd01854 YjeQ_engC YjeQ/EngC. 98.4 3.3E-07 7.3E-12 74.8 4.3 34 6-39 161-194 (287)
480 cd01121 Sms Sms (bacterial rad 98.4 5.1E-07 1.1E-11 76.2 5.5 41 3-43 79-120 (372)
481 PRK13891 conjugal transfer pro 98.4 1.7E-06 3.6E-11 80.3 9.2 49 104-158 684-735 (852)
482 PRK05922 type III secretion sy 98.4 3.2E-07 6.8E-12 78.5 4.1 43 1-43 152-194 (434)
483 COG0194 Gmk Guanylate kinase [ 98.4 6.9E-06 1.5E-10 62.3 10.8 46 132-184 88-134 (191)
484 TIGR01026 fliI_yscN ATPase Fli 98.4 3.2E-07 6.9E-12 78.9 4.1 44 1-44 158-201 (440)
485 PRK05480 uridine/cytidine kina 98.4 5E-07 1.1E-11 70.2 4.7 27 4-30 4-30 (209)
486 TIGR02546 III_secr_ATP type II 98.4 3.3E-07 7E-12 78.5 3.8 43 1-43 140-182 (422)
487 PF00488 MutS_V: MutS domain V 98.4 1E-06 2.2E-11 70.0 6.3 46 105-156 120-169 (235)
488 PRK09862 putative ATP-dependen 98.4 4.7E-07 1E-11 79.0 4.7 43 2-44 206-248 (506)
489 cd01125 repA Hexameric Replica 98.3 8.9E-07 1.9E-11 70.3 5.9 23 6-28 1-23 (239)
490 TIGR01070 mutS1 DNA mismatch r 98.3 2.1E-06 4.6E-11 79.3 9.0 50 105-161 669-722 (840)
491 PRK12727 flagellar biosynthesi 98.3 5.6E-06 1.2E-10 72.4 10.9 29 3-31 347-375 (559)
492 PRK14088 dnaA chromosomal repl 98.3 4.6E-06 1E-10 72.0 10.4 74 107-185 194-275 (440)
493 PRK08084 DNA replication initi 98.3 8.4E-06 1.8E-10 64.7 11.2 128 5-187 44-181 (235)
494 PRK04863 mukB cell division pr 98.3 4.2E-07 9.2E-12 87.8 4.2 41 2-43 24-64 (1486)
495 cd04155 Arl3 Arl3 subfamily. 98.3 6.1E-07 1.3E-11 67.0 4.1 23 7-29 15-37 (173)
496 PRK04296 thymidine kinase; Pro 98.3 8.2E-06 1.8E-10 62.6 10.4 35 106-143 77-112 (190)
497 PLN03046 D-glycerate 3-kinase; 98.3 4.8E-07 1E-11 76.7 3.7 38 7-44 213-253 (460)
498 PLN02318 phosphoribulokinase/u 98.3 5.8E-07 1.3E-11 79.2 4.2 36 7-43 66-101 (656)
499 PRK14721 flhF flagellar biosyn 98.3 5.5E-07 1.2E-11 76.9 3.8 28 3-30 188-215 (420)
500 PLN03210 Resistant to P. syrin 98.3 2.5E-06 5.4E-11 81.6 8.4 40 2-41 203-243 (1153)
No 1
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=5.8e-39 Score=244.69 Aligned_cols=157 Identities=15% Similarity=0.243 Sum_probs=136.9
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEch---hhccCCceeeEEEeec--CCcccccccccCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTG---EIRQGGQRVGFEVVTL--DDRRAPLASINASS 75 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~---~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~ 75 (193)
++|.+||+++|+||||||||||||||+++.+|++|+|.++|..+. +....|+++|++||++ ++.+++++|+.+..
T Consensus 23 l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap 102 (240)
T COG1126 23 LSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAP 102 (240)
T ss_pred eeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhh
Confidence 578999999999999999999999999999999999999998753 3455678999999988 67788899977765
Q ss_pred CCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHH
Q 029421 76 PESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRIL 134 (193)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l 134 (193)
.....++..+....+.+.++++|+.+.. |+.+|+++++||| ++|||....++.++++.+
T Consensus 103 ~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~L 182 (240)
T COG1126 103 VKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDL 182 (240)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHH
Confidence 5445555555566778899999987543 9999999999999 699999999999999999
Q ss_pred hC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 135 ES-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 135 ~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
++ |.|+++| ||++.++.++|||+
T Consensus 183 A~eGmTMivV------THEM~FAr~Vadrv 206 (240)
T COG1126 183 AEEGMTMIIV------THEMGFAREVADRV 206 (240)
T ss_pred HHcCCeEEEE------echhHHHHHhhheE
Confidence 87 9999999 99999999999994
No 2
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=5.1e-37 Score=242.90 Aligned_cols=178 Identities=16% Similarity=0.217 Sum_probs=135.3
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh--hccCCceeeEEEeec--CCcccccccccCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE--IRQGGQRVGFEVVTL--DDRRAPLASINASSP 76 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~--~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~ 76 (193)
|++++|++++|+||||||||||||+|+|+++|.+|+|.++|+++.. .+...++++|+||.+ ...+++++...+...
T Consensus 23 ~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~ 102 (258)
T COG1120 23 FSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRY 102 (258)
T ss_pred EEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCC
Confidence 6799999999999999999999999999999999999999999853 345678999999986 234555554433322
Q ss_pred CCCCC---Ccccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421 77 ESYRW---PTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLR 132 (193)
Q Consensus 77 ~~~~~---~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~ 132 (193)
....+ ....+...+.+.++.+++.+++ |+++|++|+|||| +.||+..+.+++++++
T Consensus 103 p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~ 182 (258)
T COG1120 103 PHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLR 182 (258)
T ss_pred cccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHH
Confidence 11111 1222333456677777776543 8999999999999 6999999999999999
Q ss_pred HHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHHHHHHHH
Q 029421 133 ILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLKDNIYYQ 185 (193)
Q Consensus 133 ~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~~~~~~~ 185 (193)
.+. + |.|||++ .||++.+.++||++ +|.++.... +.+.+.++..+.
T Consensus 183 ~l~~~~~~tvv~v------lHDlN~A~ryad~~i~lk~G~i~a~G~-p~evlT~e~l~~ 234 (258)
T COG1120 183 DLNREKGLTVVMV------LHDLNLAARYADHLILLKDGKIVAQGT-PEEVLTEENLRE 234 (258)
T ss_pred HHHHhcCCEEEEE------ecCHHHHHHhCCEEEEEECCeEEeecC-cchhcCHHHHHH
Confidence 987 4 9999999 99999999999993 444443332 344566666443
No 3
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-36 Score=239.62 Aligned_cols=156 Identities=20% Similarity=0.253 Sum_probs=123.4
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeec-CC---cccccccccCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTL-DD---RRAPLASINASSP 76 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~-~~---~~~~~~~~~~~~~ 76 (193)
|+|++|++++|+||||||||||+|+|+|+++|.+|+|.++|+.....+. +.+|||+||.. .. ..++.+.......
T Consensus 25 l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~-~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~ 103 (254)
T COG1121 25 LSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK-RLRIGYVPQKSSVDRSFPITVKDVVLLGRY 103 (254)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc-CCeEEEcCcccccCCCCCcCHHHHHHccCc
Confidence 5789999999999999999999999999999999999999987643322 46899999965 11 2233333222211
Q ss_pred CCC---CCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421 77 ESY---RWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLR 132 (193)
Q Consensus 77 ~~~---~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~ 132 (193)
... ......+.+.+.++++++++.++. |+++|++|+|||| +|+|+.++..+.++++
T Consensus 104 ~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~ 183 (254)
T COG1121 104 GKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLK 183 (254)
T ss_pred ccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHH
Confidence 111 122223345567888888887553 8999999999999 7999999999999999
Q ss_pred HHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 133 ILES-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 133 ~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+++ |+|||+| |||+..+.+++|++
T Consensus 184 ~l~~eg~tIl~v------tHDL~~v~~~~D~v 209 (254)
T COG1121 184 ELRQEGKTVLMV------THDLGLVMAYFDRV 209 (254)
T ss_pred HHHHCCCEEEEE------eCCcHHhHhhCCEE
Confidence 9987 9999999 99999999999994
No 4
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-36 Score=236.47 Aligned_cols=156 Identities=15% Similarity=0.282 Sum_probs=133.7
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh--hccCCceeeEEEeec--CCcccccccccCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE--IRQGGQRVGFEVVTL--DDRRAPLASINASSP 76 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~--~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~ 76 (193)
|+|++||+++++|||||||||+||+|+++++|++|+|.++|+++.. ....|++|||+-|.. ++.+++.+|+.+..
T Consensus 22 l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP- 100 (309)
T COG1125 22 LTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVP- 100 (309)
T ss_pred EEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhh-
Confidence 6899999999999999999999999999999999999999999854 335578999999976 67788888865532
Q ss_pred CCCCCCcccceeeehhhhhhhcccc--cc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHH
Q 029421 77 ESYRWPTVGRYKVDVASFEAIALPE--LQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRI 133 (193)
Q Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~l~~--~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~ 133 (193)
....|.+.....+..+.+..+++.. +. |+.+|++++|||| ++|||.+|..+++.+..
T Consensus 101 ~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~ 180 (309)
T COG1125 101 KLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKE 180 (309)
T ss_pred hhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHH
Confidence 3455666555667778888888863 21 8999999999999 89999999999999988
Q ss_pred HhC--CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 134 LES--NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 134 l~~--g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
+++ |+|||+| |||++++.+++|++
T Consensus 181 lq~~l~kTivfV------THDidEA~kLadri 206 (309)
T COG1125 181 LQKELGKTIVFV------THDIDEALKLADRI 206 (309)
T ss_pred HHHHhCCEEEEE------ecCHHHHHhhhceE
Confidence 865 9999999 99999999999995
No 5
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.5e-36 Score=234.68 Aligned_cols=152 Identities=16% Similarity=0.222 Sum_probs=126.1
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeec--CCcccccccccCCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTL--DDRRAPLASINASSPES 78 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~~~ 78 (193)
|+|.+||+++|+||||||||||||+|+|+.+|++|+|.++|..+. ....+++|+||+. .+..++.+|+.+.....
T Consensus 24 L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~---~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~ 100 (248)
T COG1116 24 LSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVT---GPGPDIGYVFQEDALLPWLTVLDNVALGLELR 100 (248)
T ss_pred eEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccC---CCCCCEEEEeccCcccchhhHHhhheehhhcc
Confidence 679999999999999999999999999999999999999998872 2356789999987 56778888877765432
Q ss_pred CCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHH-HhC
Q 029421 79 YRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRI-LES 136 (193)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~-l~~ 136 (193)
. ....+....+.+.++.+|+.... ++.+|++|+|||| ++||..++..+++.+.. +++
T Consensus 101 ~-~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~ 179 (248)
T COG1116 101 G-KSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEE 179 (248)
T ss_pred c-cchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHh
Confidence 2 22222334677888888886543 8999999999999 89999999877766655 555
Q ss_pred -CCcEEEEecCCCCCCChhHHHHHhcC
Q 029421 137 -NIPVLASIPAPKSGRDIPAVARLRNH 162 (193)
Q Consensus 137 -g~tvl~~~~~~~~tHd~~~~~~~~d~ 162 (193)
++||++| |||++++..++||
T Consensus 180 ~~~TvllV------THdi~EAv~LsdR 200 (248)
T COG1116 180 TRKTVLLV------THDVDEAVYLADR 200 (248)
T ss_pred hCCEEEEE------eCCHHHHHhhhCE
Confidence 9999999 9999999999998
No 6
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=4e-36 Score=232.31 Aligned_cols=172 Identities=16% Similarity=0.274 Sum_probs=137.6
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh-----ccCCceeeEEEeec--CCcccccccccC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI-----RQGGQRVGFEVVTL--DDRRAPLASINA 73 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~-----~~~~~~ig~~~q~~--~~~~~~~~~~~~ 73 (193)
|+|++||+++|+||||||||||||+|.|+++|++|+|+++|.++... ...++++|++||+- +..+++++|..+
T Consensus 29 l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVaf 108 (263)
T COG1127 29 LDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAF 108 (263)
T ss_pred eeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhhe
Confidence 67999999999999999999999999999999999999999997433 23467899999976 567889999888
Q ss_pred CCCCCCCCCcccceeeehhhhhhhccccc---------c------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421 74 SSPESYRWPTVGRYKVDVASFEAIALPEL---------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVL 131 (193)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll 131 (193)
+..+....+.......+...++.+|+... + ++.+|+++++||| +||||.+...+.+++
T Consensus 109 plre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI 188 (263)
T COG1127 109 PLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELI 188 (263)
T ss_pred ehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHH
Confidence 77655444443333444555666666533 1 8899999999999 699999999999999
Q ss_pred HHHhC--CCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHHH
Q 029421 132 RILES--NIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLKD 180 (193)
Q Consensus 132 ~~l~~--g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~~ 180 (193)
+.+++ |.|+++| |||++.+..+||++ ++++. ..++.+++.+
T Consensus 189 ~~L~~~lg~T~i~V------THDl~s~~~i~Drv~~L~~gkv~--~~Gt~~el~~ 235 (263)
T COG1127 189 RELNDALGLTVIMV------THDLDSLLTIADRVAVLADGKVI--AEGTPEELLA 235 (263)
T ss_pred HHHHHhhCCEEEEE------ECChHHHHhhhceEEEEeCCEEE--EeCCHHHHHh
Confidence 99875 9999999 99999999999995 34443 3345555443
No 7
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=3.5e-36 Score=247.59 Aligned_cols=158 Identities=13% Similarity=0.160 Sum_probs=135.4
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeec--CCcccccccccCCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTL--DDRRAPLASINASSPES 78 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~~~ 78 (193)
|+|++||+++|+||||||||||||+|+|+..|++|+|.++|+++...+..++.+|+|||+. ++.+++.+|+.+.....
T Consensus 26 l~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~ 105 (352)
T COG3842 26 LDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVR 105 (352)
T ss_pred eeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhc
Confidence 5789999999999999999999999999999999999999999988888889999999997 78899999988876522
Q ss_pred CCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh-C
Q 029421 79 YRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE-S 136 (193)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~-~ 136 (193)
..........++.++++.+++..+. |+.+|++|||||| ++||...|..+..-++.+. +
T Consensus 106 ~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~ 185 (352)
T COG3842 106 KKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRE 185 (352)
T ss_pred CCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHh
Confidence 1122222335677888888877553 8999999999999 8999999988887777765 4
Q ss_pred -CCcEEEEecCCCCCCChhHHHHHhcCCC
Q 029421 137 -NIPVLASIPAPKSGRDIPAVARLRNHPG 164 (193)
Q Consensus 137 -g~tvl~~~~~~~~tHd~~~~~~~~d~~~ 164 (193)
|.|.|+| |||-+++..++|++.
T Consensus 186 ~giT~i~V------THDqeEAl~msDrI~ 208 (352)
T COG3842 186 LGITFVYV------THDQEEALAMSDRIA 208 (352)
T ss_pred cCCeEEEE------ECCHHHHhhhccceE
Confidence 9999999 999999999999964
No 8
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.8e-36 Score=230.86 Aligned_cols=177 Identities=14% Similarity=0.229 Sum_probs=139.6
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEch-----hhccCCceeeEEEeec--CCcccccccccC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTG-----EIRQGGQRVGFEVVTL--DDRRAPLASINA 73 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~-----~~~~~~~~ig~~~q~~--~~~~~~~~~~~~ 73 (193)
|+|++||+++|+||||||||||||+|+|+..|++|+|.++|.++. +.+..++++||+||++ .+..++++|...
T Consensus 25 l~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~ 104 (258)
T COG3638 25 LEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLL 104 (258)
T ss_pred EEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhceeEeccCCcccccHHHHHHHh
Confidence 579999999999999999999999999999999999999998763 2345578999999988 456777777544
Q ss_pred CCCC-------CCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccc
Q 029421 74 SSPE-------SYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSS 125 (193)
Q Consensus 74 ~~~~-------~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~ 125 (193)
.... ..++........+.+.|+++|+.+.+ |+++|+++|.||| ++|||.+.+
T Consensus 105 grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~ 184 (258)
T COG3638 105 GRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAK 184 (258)
T ss_pred hhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHH
Confidence 3321 12334344455677889999986543 8999999999999 799999999
Q ss_pred hHHHHHHHHhC--CCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHHHHHHHH
Q 029421 126 FFPAVLRILES--NIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLKDNIYYQ 185 (193)
Q Consensus 126 ~~~~ll~~l~~--g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~~~~~~~ 185 (193)
.++++++.+.+ |.|||++ .|+++.+.+||+|+ ++.+++..+ .+++.++....
T Consensus 185 ~Vm~~l~~in~~~g~Tvi~n------LH~vdlA~~Y~~Riigl~~G~ivfDg~--~~el~~~~~~~ 242 (258)
T COG3638 185 KVMDILKDINQEDGITVIVN------LHQVDLAKKYADRIIGLKAGRIVFDGP--ASELTDEALDE 242 (258)
T ss_pred HHHHHHHHHHHHcCCEEEEE------echHHHHHHHHhhheEecCCcEEEeCC--hhhhhHHHHHH
Confidence 99999999864 9999999 99999999999994 455555443 33354444333
No 9
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-35 Score=237.23 Aligned_cols=157 Identities=16% Similarity=0.253 Sum_probs=136.2
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEch-----hhccCCceeeEEEeecC--CcccccccccC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTG-----EIRQGGQRVGFEVVTLD--DRRAPLASINA 73 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~-----~~~~~~~~ig~~~q~~~--~~~~~~~~~~~ 73 (193)
|+|++|+++||+|.||||||||+|||+++.+|++|+|.++|.++. ..+..+++||++||+++ ...++++|+.+
T Consensus 27 L~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~ 106 (339)
T COG1135 27 LEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAF 106 (339)
T ss_pred EEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccchHHhhhhh
Confidence 579999999999999999999999999999999999999998863 34566889999999983 45688899888
Q ss_pred CCCCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421 74 SSPESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLR 132 (193)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~ 132 (193)
+.... .+++.+...++.++++.+|+++.. |+.+|++|++||| ++|||...+.+.++++
T Consensus 107 PLeia-g~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~ 185 (339)
T COG1135 107 PLELA-GVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLK 185 (339)
T ss_pred hHhhc-CCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHH
Confidence 77533 345555567788899999988653 9999999999999 6999999999999999
Q ss_pred HHhC--CCcEEEEecCCCCCCChhHHHHHhcCCC
Q 029421 133 ILES--NIPVLASIPAPKSGRDIPAVARLRNHPG 164 (193)
Q Consensus 133 ~l~~--g~tvl~~~~~~~~tHd~~~~~~~~d~~~ 164 (193)
.+.+ |.||+++ ||.++.+.++|||+.
T Consensus 186 ~In~~lglTIvlI------THEm~Vvk~ic~rVa 213 (339)
T COG1135 186 DINRELGLTIVLI------THEMEVVKRICDRVA 213 (339)
T ss_pred HHHHHcCCEEEEE------echHHHHHHHhhhhe
Confidence 9864 9999999 999999999999964
No 10
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.2e-35 Score=243.20 Aligned_cols=157 Identities=13% Similarity=0.164 Sum_probs=132.7
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeec--CCcccccccccCCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTL--DDRRAPLASINASSPES 78 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~~~ 78 (193)
|+|+.||+++|+||||||||||||+|+|+.+|++|+|.++|.++...+...++++++||++ ++.+++++|+.++....
T Consensus 24 l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~ 103 (338)
T COG3839 24 LDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLR 103 (338)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhC
Confidence 5789999999999999999999999999999999999999999987777788999999997 78889999988765422
Q ss_pred CCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHHhC-
Q 029421 79 YRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILES- 136 (193)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~- 136 (193)
..+..+..+++.+..+.+++.++. ++.+|++++|||| ++||...+..+...++.+++
T Consensus 104 -~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~ 182 (338)
T COG3839 104 -GVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHER 182 (338)
T ss_pred -CCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHh
Confidence 122333344556666777766543 8899999999999 89999999888888887765
Q ss_pred -CCcEEEEecCCCCCCChhHHHHHhcCCC
Q 029421 137 -NIPVLASIPAPKSGRDIPAVARLRNHPG 164 (193)
Q Consensus 137 -g~tvl~~~~~~~~tHd~~~~~~~~d~~~ 164 (193)
|.|+|+| |||-.++..++|++.
T Consensus 183 l~~T~IYV------THDq~EAmtladri~ 205 (338)
T COG3839 183 LGTTTIYV------THDQVEAMTLADRIV 205 (338)
T ss_pred cCCcEEEE------cCCHHHHHhhCCEEE
Confidence 9999999 999999999999953
No 11
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-34 Score=231.32 Aligned_cols=157 Identities=15% Similarity=0.207 Sum_probs=129.6
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEece---EchhhccCCceeeEEEeec--CCcccccccccCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGF---YTGEIRQGGQRVGFEVVTL--DDRRAPLASINASS 75 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~---~~~~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~ 75 (193)
++|+.||.++|+||||||||||||+|+|+..|++|.|.++|. +........++|||+||+. ++.+++.+|+.+..
T Consensus 23 l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl 102 (345)
T COG1118 23 LDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGL 102 (345)
T ss_pred eeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechhhcccchHHhhhhhcc
Confidence 578999999999999999999999999999999999999999 5555555678999999997 67789999988876
Q ss_pred CCCCCCC-cccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHH
Q 029421 76 PESYRWP-TVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRI 133 (193)
Q Consensus 76 ~~~~~~~-~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~ 133 (193)
......+ ......++.+.++.+.++.+. ++.+|++|+|||| ++||...++.+...++.
T Consensus 103 ~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~ 182 (345)
T COG1118 103 KVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRK 182 (345)
T ss_pred cccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHH
Confidence 4332222 222334455666666665443 8899999999999 79999999999999988
Q ss_pred HhC--CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 134 LES--NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 134 l~~--g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
+.+ |.|.++| |||.+++.++||++
T Consensus 183 ~~~~~~~ttvfV------THD~eea~~ladrv 208 (345)
T COG1118 183 LHDRLGVTTVFV------THDQEEALELADRV 208 (345)
T ss_pred HHHhhCceEEEE------eCCHHHHHhhcceE
Confidence 764 9999999 99999999999993
No 12
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=6.9e-35 Score=237.65 Aligned_cols=156 Identities=19% Similarity=0.193 Sum_probs=124.4
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh-hccCCceeeEEEeec--CCcccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE-IRQGGQRVGFEVVTL--DDRRAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~-~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~~ 77 (193)
|+|++|+++||+||||||||||+|+|+|+++|++|+|.++|.+... ....++++||+||++ ++.+++.+++.+....
T Consensus 26 ~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l 105 (293)
T COG1131 26 FEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARL 105 (293)
T ss_pred EEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHH
Confidence 6789999999999999999999999999999999999999998753 344567899999987 4566777765543221
Q ss_pred CCCCCcccceeeehhhhhhhcccc--------cc------------cCCCCCEEEEecC-CCccccccchHHHHHHHHhC
Q 029421 78 SYRWPTVGRYKVDVASFEAIALPE--------LQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILES 136 (193)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~l~~--------~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~ 136 (193)
..... ........++++.+++.. ++ |+.+|+++||||| +||||.++..+.++++.+++
T Consensus 106 ~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~ 184 (293)
T COG1131 106 YGLSK-EEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAK 184 (293)
T ss_pred hCCCh-hHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHh
Confidence 11111 111234556677777664 11 8899999999999 69999999999999999876
Q ss_pred -C-CcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 137 -N-IPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 137 -g-~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
| .||+++ ||.+++++.+||++
T Consensus 185 ~g~~tvlis------sH~l~e~~~~~d~v 207 (293)
T COG1131 185 EGGVTILLS------THILEEAEELCDRV 207 (293)
T ss_pred CCCcEEEEe------CCcHHHHHHhCCEE
Confidence 6 899999 99999999999984
No 13
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=9.8e-35 Score=225.83 Aligned_cols=155 Identities=16% Similarity=0.237 Sum_probs=121.1
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh------ccCCceeeEEEeec--CCccccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI------RQGGQRVGFEVVTL--DDRRAPLASIN 72 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~------~~~~~~ig~~~q~~--~~~~~~~~~~~ 72 (193)
|+|++||+++|+|||||||||||++|.|+.+|++|.|.++|.++... ..+++++||+||++ .+.+++.+|+.
T Consensus 26 l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~ 105 (226)
T COG1136 26 LEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVE 105 (226)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHH
Confidence 57999999999999999999999999999999999999999886422 23457899999987 46678888877
Q ss_pred CCCCCCCCCCcccceeeehhhhhhhccccc---------c------------cCCCCCEEEEecC-CCccccccchHHHH
Q 029421 73 ASSPESYRWPTVGRYKVDVASFEAIALPEL---------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAV 130 (193)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---------~------------l~~~p~llllDEp-~~LD~~~~~~~~~l 130 (193)
++......... .........++.+++.+. + ++.+|+++++||| ++||..+...+.++
T Consensus 106 lpl~~~~~~~~-~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~l 184 (226)
T COG1136 106 LPLLIAGKSAG-RRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLEL 184 (226)
T ss_pred hHHHHcCCChh-HHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHH
Confidence 64322111111 222334456666666522 1 8999999999999 59999999999999
Q ss_pred HHHHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 131 LRILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 131 l~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
++.+. + |+|||+| |||.. ++.+|||+
T Consensus 185 l~~~~~~~g~tii~V------THd~~-lA~~~dr~ 212 (226)
T COG1136 185 LRELNKERGKTIIMV------THDPE-LAKYADRV 212 (226)
T ss_pred HHHHHHhcCCEEEEE------cCCHH-HHHhCCEE
Confidence 99985 4 9999999 99965 55689983
No 14
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=3.1e-34 Score=214.73 Aligned_cols=155 Identities=17% Similarity=0.230 Sum_probs=129.9
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh-----hccCCceeeEEEeec--CCcccccccccC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE-----IRQGGQRVGFEVVTL--DDRRAPLASINA 73 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~-----~~~~~~~ig~~~q~~--~~~~~~~~~~~~ 73 (193)
|+|++||++.|+||||||||||||+|.+..+|++|+|+++|.++.. .+..+++||++||++ -...++++|..+
T Consensus 23 ~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~ 102 (223)
T COG2884 23 FHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVAL 102 (223)
T ss_pred EeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhh
Confidence 6799999999999999999999999999999999999999999743 344578999999997 456788999887
Q ss_pred CCCCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421 74 SSPESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLR 132 (193)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~ 132 (193)
+.... ..+......++.+.++.+|+.+.. ++.+|++||.||| ++|||.....++.++.
T Consensus 103 pL~v~-G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfe 181 (223)
T COG2884 103 PLRVI-GKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFE 181 (223)
T ss_pred hhhcc-CCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHH
Confidence 76432 223333445667888888876432 8899999999999 5999999999999999
Q ss_pred HHhC-CCcEEEEecCCCCCCChhHHHHHhcC
Q 029421 133 ILES-NIPVLASIPAPKSGRDIPAVARLRNH 162 (193)
Q Consensus 133 ~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~ 162 (193)
.+.. |.||+++ |||.+.+.++..+
T Consensus 182 einr~GtTVl~A------THd~~lv~~~~~r 206 (223)
T COG2884 182 EINRLGTTVLMA------THDLELVNRMRHR 206 (223)
T ss_pred HHhhcCcEEEEE------eccHHHHHhccCc
Confidence 9987 9999999 9999888877555
No 15
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-34 Score=219.06 Aligned_cols=177 Identities=16% Similarity=0.129 Sum_probs=130.1
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh-hccCCceeeEEEeec--CCcccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE-IRQGGQRVGFEVVTL--DDRRAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~-~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~~ 77 (193)
|++++|++++|+|||||||||+||+|++++.|++|.|.++|.+... ....++++|.++... +..++..+|+.+...
T Consensus 23 F~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~- 101 (245)
T COG4555 23 FEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFAR- 101 (245)
T ss_pred EEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHHHHHHHHHH-
Confidence 6789999999999999999999999999999999999999999743 345578899888433 334555565443211
Q ss_pred CCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHHhC
Q 029421 78 SYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILES 136 (193)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~ 136 (193)
.......+...+..++.+++++.++. ++.+|+++++||| +|||..++..+.+.++++++
T Consensus 102 L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~ 181 (245)
T COG4555 102 LNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKN 181 (245)
T ss_pred HhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhc
Confidence 01111111123333444555544332 8999999999999 79999999999999999987
Q ss_pred -CCcEEEEecCCCCCCChhHHHHHhcCCCcE--EEEeCCCChhHHHHHHHH
Q 029421 137 -NIPVLASIPAPKSGRDIPAVARLRNHPGAT--IFTLSPGNRDSLKDNIYY 184 (193)
Q Consensus 137 -g~tvl~~~~~~~~tHd~~~~~~~~d~~~~~--~~~~~~~~~~~l~~~~~~ 184 (193)
|.+||++ ||++++++.+||++... -.++..++.+.+.++...
T Consensus 182 egr~viFS------SH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r~~~ 226 (245)
T COG4555 182 EGRAVIFS------SHIMQEVEALCDRVIVLHKGEVVLEGSIEALDARTVL 226 (245)
T ss_pred CCcEEEEe------cccHHHHHHhhheEEEEecCcEEEcCCHHHHHHHHhh
Confidence 9999999 99999999999994211 114445677666665543
No 16
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=4.3e-34 Score=234.50 Aligned_cols=156 Identities=21% Similarity=0.217 Sum_probs=119.6
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh-ccCCceeeEEEeec--CCcccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI-RQGGQRVGFEVVTL--DDRRAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~-~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~~ 77 (193)
|+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ...++++||+||++ ++..++.+++.+...
T Consensus 28 l~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~- 106 (306)
T PRK13537 28 FHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGR- 106 (306)
T ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHH-
Confidence 67899999999999999999999999999999999999999987432 23457899999986 333566666543111
Q ss_pred CCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHHhC
Q 029421 78 SYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILES 136 (193)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~ 136 (193)
..............++++.+++.... ++.+|++++|||| +|||+.++..++++++.+++
T Consensus 107 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~ 186 (306)
T PRK13537 107 YFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA 186 (306)
T ss_pred HcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh
Confidence 11111111112233455555554321 8899999999999 69999999999999999876
Q ss_pred -CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 137 -NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 137 -g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
|+|||++ ||+++++.++||++
T Consensus 187 ~g~till~------sH~l~e~~~~~d~i 208 (306)
T PRK13537 187 RGKTILLT------THFMEEAERLCDRL 208 (306)
T ss_pred CCCEEEEE------CCCHHHHHHhCCEE
Confidence 9999999 99999999999984
No 17
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-34 Score=224.31 Aligned_cols=173 Identities=16% Similarity=0.198 Sum_probs=133.5
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc---cCCceeeEEEeec--CCcccccccccCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR---QGGQRVGFEVVTL--DDRRAPLASINASS 75 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~---~~~~~ig~~~q~~--~~~~~~~~~~~~~~ 75 (193)
|++++||+++|+||||||||||+++|+|.++|++|+|.++|+++...+ ..+..++--||.+ ++.+++++|+....
T Consensus 25 l~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~ 104 (250)
T COG0411 25 LEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGA 104 (250)
T ss_pred EEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeecccccccCCCcHHHHHHHHh
Confidence 678999999999999999999999999999999999999999875433 2345566678876 66788888866542
Q ss_pred CCC------CC---C--Ccccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccc
Q 029421 76 PES------YR---W--PTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFS 123 (193)
Q Consensus 76 ~~~------~~---~--~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~ 123 (193)
... .+ + ...+..+.+.++++.+++.+.. |+.+|++|+|||| +||.+..
T Consensus 105 ~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e 184 (250)
T COG0411 105 HARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEE 184 (250)
T ss_pred hhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHH
Confidence 211 11 1 0111224456778888886543 8999999999999 7999999
Q ss_pred cchHHHHHHHHhC--CCcEEEEecCCCCCCChhHHHHHhcCCCcEEE--EeCCCChhHHH
Q 029421 124 SSFFPAVLRILES--NIPVLASIPAPKSGRDIPAVARLRNHPGATIF--TLSPGNRDSLK 179 (193)
Q Consensus 124 ~~~~~~ll~~l~~--g~tvl~~~~~~~~tHd~~~~~~~~d~~~~~~~--~~~~~~~~~l~ 179 (193)
...+.++++.+++ |.||+++ .||+..+..+|||+.+..+ .+..++++++.
T Consensus 185 ~~~l~~~i~~i~~~~g~tillI------EHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV~ 238 (250)
T COG0411 185 TEELAELIRELRDRGGVTILLI------EHDMKLVMGLADRIVVLNYGEVIAEGTPEEVR 238 (250)
T ss_pred HHHHHHHHHHHHhcCCcEEEEE------EeccHHHhhhccEEEeccCCcCcccCCHHHHh
Confidence 9999999999875 6999999 9999999999999643322 45666666544
No 18
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=5.4e-34 Score=220.87 Aligned_cols=153 Identities=18% Similarity=0.224 Sum_probs=123.0
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeec--CCcccccccccCCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTL--DDRRAPLASINASSPES 78 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~~~ 78 (193)
|++++|++++++|||||||||++|+|+|+++|++|+|.|+|.++.. ..+.+|||.|.+- ++.+++.+.+.+-. ..
T Consensus 23 f~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~--~~~~rIGyLPEERGLy~k~tv~dql~yla-~L 99 (300)
T COG4152 23 FEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ--EIKNRIGYLPEERGLYPKMTVEDQLKYLA-EL 99 (300)
T ss_pred eeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh--hhhhhcccChhhhccCccCcHHHHHHHHH-Hh
Confidence 6789999999999999999999999999999999999999988743 2346799999865 45566665543321 12
Q ss_pred CCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHHhC-
Q 029421 79 YRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILES- 136 (193)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~- 136 (193)
...+..+.......+++++.+.... ++.+|+++||||| +||||.+.+.+.+.+..+++
T Consensus 100 kGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~ 179 (300)
T COG4152 100 KGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEE 179 (300)
T ss_pred cCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhc
Confidence 2233333334455677777765332 7899999999999 89999999999999999887
Q ss_pred CCcEEEEecCCCCCCChhHHHHHhcC
Q 029421 137 NIPVLASIPAPKSGRDIPAVARLRNH 162 (193)
Q Consensus 137 g~tvl~~~~~~~~tHd~~~~~~~~d~ 162 (193)
|.|||++ ||.++.++++||+
T Consensus 180 GatIifS------sH~Me~vEeLCD~ 199 (300)
T COG4152 180 GATIIFS------SHRMEHVEELCDR 199 (300)
T ss_pred CCEEEEe------cchHHHHHHHhhh
Confidence 9999999 9999999999998
No 19
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-33 Score=235.00 Aligned_cols=156 Identities=13% Similarity=0.174 Sum_probs=124.2
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeec--CCcccccccccCCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTL--DDRRAPLASINASSPES 78 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~~~ 78 (193)
|++++|++++|+||||||||||+|+|+|+.+|++|+|.++|+++......++++||+||++ ++.+++.+|+.+....
T Consensus 25 l~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~- 103 (356)
T PRK11650 25 LDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKI- 103 (356)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhh-
Confidence 5789999999999999999999999999999999999999998754433446899999987 4456778877654321
Q ss_pred CCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh-C
Q 029421 79 YRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE-S 136 (193)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~-~ 136 (193)
.............++++.+++.++. ++.+|+++||||| ++||+..+..+.+.++.+. +
T Consensus 104 ~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~ 183 (356)
T PRK11650 104 RGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRR 183 (356)
T ss_pred cCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 1111111123345667777775432 8899999999999 7999999999988888875 4
Q ss_pred -CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 137 -NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 137 -g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
|.|+|++ |||..++..+||++
T Consensus 184 ~g~tii~v------THd~~ea~~l~D~i 205 (356)
T PRK11650 184 LKTTSLYV------THDQVEAMTLADRV 205 (356)
T ss_pred cCCEEEEE------eCCHHHHHHhCCEE
Confidence 8999999 99999999999994
No 20
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=2.1e-33 Score=233.13 Aligned_cols=156 Identities=19% Similarity=0.210 Sum_probs=119.3
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh-ccCCceeeEEEeec--CCcccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI-RQGGQRVGFEVVTL--DDRRAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~-~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~~ 77 (193)
|+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ...++.+||+||++ .+..++.+++.+...
T Consensus 62 ~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~- 140 (340)
T PRK13536 62 FTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGR- 140 (340)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHH-
Confidence 67999999999999999999999999999999999999999987422 23456799999986 234556665443111
Q ss_pred CCCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHHHhC
Q 029421 78 SYRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILES 136 (193)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~ 136 (193)
..............++++.+++... + ++.+|+++||||| +|||+.++..++++++.+++
T Consensus 141 ~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~ 220 (340)
T PRK13536 141 YFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA 220 (340)
T ss_pred HcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh
Confidence 0111111111123345566665432 1 8899999999999 69999999999999999876
Q ss_pred -CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 137 -NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 137 -g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
|.|||++ ||+++++.++||++
T Consensus 221 ~g~tilis------SH~l~e~~~~~d~i 242 (340)
T PRK13536 221 RGKTILLT------THFMEEAERLCDRL 242 (340)
T ss_pred CCCEEEEE------CCCHHHHHHhCCEE
Confidence 9999999 99999999999994
No 21
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.98 E-value=2.2e-33 Score=230.03 Aligned_cols=156 Identities=18% Similarity=0.239 Sum_probs=118.7
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh-ccCCceeeEEEeec--CCcccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI-RQGGQRVGFEVVTL--DDRRAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~-~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~~ 77 (193)
|+|++|++++|+||||||||||+|+|+|+++|++|+|.++|.++... ...++++||+||++ .+..++.+++.+...
T Consensus 14 ~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~- 92 (302)
T TIGR01188 14 FKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLEMMGR- 92 (302)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHHHHHHHH-
Confidence 67899999999999999999999999999999999999999886422 22356799999986 233455555433211
Q ss_pred CCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHHhC
Q 029421 78 SYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILES 136 (193)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~ 136 (193)
..............++++.+++.... ++.+|+++||||| +|||+.++..+.++++.+++
T Consensus 93 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~ 172 (302)
T TIGR01188 93 LYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKE 172 (302)
T ss_pred HcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh
Confidence 00111111112234566666664321 8899999999999 69999999999999998876
Q ss_pred -CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 137 -NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 137 -g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
|.|||++ ||+++++.++||++
T Consensus 173 ~g~tvi~~------sH~~~~~~~~~d~v 194 (302)
T TIGR01188 173 EGVTILLT------THYMEEADKLCDRI 194 (302)
T ss_pred CCCEEEEE------CCCHHHHHHhCCEE
Confidence 9999999 99999999999984
No 22
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.98 E-value=5.7e-33 Score=218.88 Aligned_cols=156 Identities=19% Similarity=0.277 Sum_probs=124.0
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEch---hhccCCceeeEEEeecCCcc---cccccccCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTG---EIRQGGQRVGFEVVTLDDRR---APLASINAS 74 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~---~~~~~~~~ig~~~q~~~~~~---~~~~~~~~~ 74 (193)
|+|++|++++|+|+||||||||+++++|+++|++|.|.++|.+.. .....++++||+||+|..+. ++.+.+.+.
T Consensus 25 ~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg 104 (235)
T COG1122 25 LEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFG 104 (235)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCcHHHHHhhc
Confidence 578999999999999999999999999999999999999999864 24556789999999985432 333333333
Q ss_pred CCCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHH
Q 029421 75 SPESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRI 133 (193)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~ 133 (193)
.. ....+..+...++.+.++.+++.++. ++.+|++|||||| ++||+.++..+.++++.
T Consensus 105 ~~-n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~ 183 (235)
T COG1122 105 LE-NLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKK 183 (235)
T ss_pred hh-hcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHH
Confidence 22 12222222334556777777775432 8899999999999 69999999999999999
Q ss_pred HhC--CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 134 LES--NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 134 l~~--g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
+++ |+|+|++ |||++.+..+||++
T Consensus 184 L~~~~~~tii~~------tHd~~~~~~~ad~v 209 (235)
T COG1122 184 LKEEGGKTIIIV------THDLELVLEYADRV 209 (235)
T ss_pred HHhcCCCeEEEE------eCcHHHHHhhCCEE
Confidence 875 6899999 99999999999994
No 23
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.98 E-value=2.3e-33 Score=234.04 Aligned_cols=156 Identities=13% Similarity=0.177 Sum_probs=125.1
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeec--CCcccccccccCCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTL--DDRRAPLASINASSPES 78 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~~~ 78 (193)
|++++|++++|+||||||||||+|+|+|+.+|++|+|.++|+++......++++||+||++ ++.+++.+|+.+....
T Consensus 25 ~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~- 103 (353)
T TIGR03265 25 LSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKN- 103 (353)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHh-
Confidence 5789999999999999999999999999999999999999998754444457899999987 4556788876654321
Q ss_pred CCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh-C
Q 029421 79 YRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE-S 136 (193)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~-~ 136 (193)
.............++++.+++..+. |+.+|+++||||| ++||+..+..+...++.+. +
T Consensus 104 ~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~ 183 (353)
T TIGR03265 104 RGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRR 183 (353)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh
Confidence 1111111223455677777776542 8899999999999 7999999999998888874 4
Q ss_pred -CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 137 -NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 137 -g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
|.|+|++ |||.+++..+||++
T Consensus 184 ~~~tvi~v------THd~~ea~~l~d~i 205 (353)
T TIGR03265 184 LGVTTIMV------THDQEEALSMADRI 205 (353)
T ss_pred cCCEEEEE------cCCHHHHHHhCCEE
Confidence 8999999 99999999999994
No 24
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=3.4e-33 Score=232.70 Aligned_cols=156 Identities=15% Similarity=0.150 Sum_probs=124.5
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeec--CCcccccccccCCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTL--DDRRAPLASINASSPES 78 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~~~ 78 (193)
|++++|++++|+||||||||||+|+|+|+++|++|+|.++|.++......++++||+||++ ++.+++.+|+.+....
T Consensus 27 l~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~- 105 (351)
T PRK11432 27 LTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKM- 105 (351)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhH-
Confidence 5789999999999999999999999999999999999999998754444457899999987 4556778887654321
Q ss_pred CCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh-C
Q 029421 79 YRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE-S 136 (193)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~-~ 136 (193)
.............++++.+++..+. |+.+|+++||||| ++||+..+..+...++.+. +
T Consensus 106 ~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~ 185 (351)
T PRK11432 106 LGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQ 185 (351)
T ss_pred cCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh
Confidence 1111111223345566666665432 8899999999999 7999999999999998875 4
Q ss_pred -CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 137 -NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 137 -g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
|.|+|++ |||.+++..+||++
T Consensus 186 ~g~tii~v------THd~~e~~~laD~i 207 (351)
T PRK11432 186 FNITSLYV------THDQSEAFAVSDTV 207 (351)
T ss_pred cCCEEEEE------cCCHHHHHHhCCEE
Confidence 8999999 99999999999994
No 25
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.98 E-value=4.9e-33 Score=220.33 Aligned_cols=157 Identities=17% Similarity=0.278 Sum_probs=117.5
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh-----ccCCceeeEEEeec--CCcccccccccC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI-----RQGGQRVGFEVVTL--DDRRAPLASINA 73 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~-----~~~~~~ig~~~q~~--~~~~~~~~~~~~ 73 (193)
|+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ...++.++|+||++ .+..++.+++.+
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~ 100 (235)
T cd03261 21 LDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAF 100 (235)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCcHHHHHHH
Confidence 57899999999999999999999999999999999999999876422 22356799999986 233455565443
Q ss_pred CCCCCCCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421 74 SSPESYRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLR 132 (193)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~ 132 (193)
..................+.++.+++... + ++.+|+++||||| ++||+.++..+.++++
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~ 180 (235)
T cd03261 101 PLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIR 180 (235)
T ss_pred HHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHH
Confidence 21100001111111223445666666432 1 8899999999999 6999999999999998
Q ss_pred HHhC--CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 133 ILES--NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 133 ~l~~--g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+++ |.|||++ |||++++..+||++
T Consensus 181 ~~~~~~~~tvi~v------sH~~~~~~~~~d~v 207 (235)
T cd03261 181 SLKKELGLTSIMV------THDLDTAFAIADRI 207 (235)
T ss_pred HHHHhcCcEEEEE------ecCHHHHHHhcCEE
Confidence 8753 8999999 99999999999984
No 26
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.98 E-value=7.4e-33 Score=229.85 Aligned_cols=156 Identities=15% Similarity=0.231 Sum_probs=123.4
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh-----ccCCceeeEEEeec--CCcccccccccC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI-----RQGGQRVGFEVVTL--DDRRAPLASINA 73 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~-----~~~~~~ig~~~q~~--~~~~~~~~~~~~ 73 (193)
|+|++|++++|+||||||||||+|+|+|+++|++|+|.++|.++... +..++++||+||++ .+..++.+|+.+
T Consensus 26 l~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~ 105 (343)
T TIGR02314 26 LHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVAL 105 (343)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCcHHHHHHH
Confidence 67899999999999999999999999999999999999999987432 22356899999986 334566776654
Q ss_pred CCCCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421 74 SSPESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLR 132 (193)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~ 132 (193)
.... ..+..........+.++.+++.+.. |+.+|++||+||| ++||+.++..+.++++
T Consensus 106 ~~~~-~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~ 184 (343)
T TIGR02314 106 PLEL-DNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLK 184 (343)
T ss_pred HHHH-cCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 3211 1112212223455677777775432 8899999999999 6999999999999999
Q ss_pred HHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 133 ILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 133 ~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+. + |.|||++ ||+++.+.++||++
T Consensus 185 ~l~~~~g~tiili------TH~~~~v~~~~d~v 211 (343)
T TIGR02314 185 EINRRLGLTILLI------THEMDVVKRICDCV 211 (343)
T ss_pred HHHHhcCCEEEEE------eCCHHHHHHhCCEE
Confidence 885 4 9999999 99999999999994
No 27
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.98 E-value=9e-33 Score=230.45 Aligned_cols=157 Identities=16% Similarity=0.218 Sum_probs=123.8
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeec--CCcccccccccCCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTL--DDRRAPLASINASSPES 78 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~~~ 78 (193)
|+|++|++++|+||||||||||+|+|+|+++|++|+|.++|+++......++++||+||++ ++..++.+|+.+.....
T Consensus 23 l~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~ 102 (353)
T PRK10851 23 LDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVL 102 (353)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhc
Confidence 5789999999999999999999999999999999999999998754333456799999986 44567777766543211
Q ss_pred C---CCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHH
Q 029421 79 Y---RWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRIL 134 (193)
Q Consensus 79 ~---~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l 134 (193)
. ............++++.+++.++. ++.+|+++||||| ++||+..+..+.++++.+
T Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l 182 (353)
T PRK10851 103 PRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQL 182 (353)
T ss_pred ccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 0 011111123445677777775432 8899999999999 799999999999999887
Q ss_pred h-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 135 E-S-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 135 ~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
. + |.|+|++ |||.+++..+||++
T Consensus 183 ~~~~g~tii~v------THd~~ea~~~~Dri 207 (353)
T PRK10851 183 HEELKFTSVFV------THDQEEAMEVADRV 207 (353)
T ss_pred HHhcCCEEEEE------eCCHHHHHHhCCEE
Confidence 5 4 8999999 99999999999994
No 28
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.98 E-value=5.4e-33 Score=216.95 Aligned_cols=156 Identities=15% Similarity=0.198 Sum_probs=117.3
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecC--CcccccccccCCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD--DRRAPLASINASSPES 78 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~~~ 78 (193)
|++++|++++|+||||||||||+++|+|+++|++|+|.++|.++......++.++|+||++. ...+..+++.+....
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~- 99 (213)
T cd03259 21 LTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKL- 99 (213)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHHHHHhHHHH-
Confidence 67899999999999999999999999999999999999999887433333467999999862 234555554332110
Q ss_pred CCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh-C
Q 029421 79 YRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE-S 136 (193)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~-~ 136 (193)
.............+.++.+++... + ++.+|+++||||| ++||+.++..+.++++.+. +
T Consensus 100 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~ 179 (213)
T cd03259 100 RGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRE 179 (213)
T ss_pred cCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH
Confidence 001111111223455666665432 1 8899999999999 6999999999999998875 3
Q ss_pred -CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 137 -NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 137 -g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
|.|||++ |||.+++.++||++
T Consensus 180 ~~~tii~~------sH~~~~~~~~~d~v 201 (213)
T cd03259 180 LGITTIYV------THDQEEALALADRI 201 (213)
T ss_pred cCCEEEEE------ecCHHHHHHhcCEE
Confidence 8999999 99999999999983
No 29
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.98 E-value=4e-33 Score=218.12 Aligned_cols=156 Identities=17% Similarity=0.223 Sum_probs=117.5
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc-----cCCceeeEEEeecC--CcccccccccC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR-----QGGQRVGFEVVTLD--DRRAPLASINA 73 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~-----~~~~~ig~~~q~~~--~~~~~~~~~~~ 73 (193)
|++++|++++|+||||||||||+++|+|+++|++|+|.++|.++.... ..++.++|++|++. +..++.+++.+
T Consensus 24 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~ 103 (216)
T TIGR00960 24 FHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAF 103 (216)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCccccccccHHHHHHH
Confidence 578999999999999999999999999999999999999998764211 13457999999862 33455565443
Q ss_pred CCCCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421 74 SSPESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLR 132 (193)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~ 132 (193)
.... .............+.++.+++.... ++.+|+++||||| ++||+.++..+.++++
T Consensus 104 ~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~ 182 (216)
T TIGR00960 104 PLRI-IGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFE 182 (216)
T ss_pred HHHh-cCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHH
Confidence 2110 0011111112334556666664321 8899999999999 6999999999999999
Q ss_pred HHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 133 ILES-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 133 ~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+++ |.|||++ |||.+++..+||++
T Consensus 183 ~~~~~~~tii~v------sH~~~~~~~~~d~i 208 (216)
T TIGR00960 183 EFNRRGTTVLVA------THDINLVETYRHRT 208 (216)
T ss_pred HHHHCCCEEEEE------eCCHHHHHHhCCEE
Confidence 8865 8999999 99999999999983
No 30
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.98 E-value=1e-32 Score=214.30 Aligned_cols=151 Identities=19% Similarity=0.233 Sum_probs=116.7
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecC---CcccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD---DRRAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~---~~~~~~~~~~~~~~~ 77 (193)
|++++|++++|+||||||||||+++|+|+++|++|+|.++|.++.. ...++.++|++|++. ...+..+++.+....
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~ 99 (205)
T cd03226 21 LDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA-KERRKSIGYVMQDVDYQLFTDSVREELLLGLKE 99 (205)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh-HHhhcceEEEecChhhhhhhccHHHHHhhhhhh
Confidence 5789999999999999999999999999999999999999988643 223457999999852 223555554332111
Q ss_pred CCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHHhC
Q 029421 78 SYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILES 136 (193)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~ 136 (193)
. . .......+.++.+++.... ++.+|+++||||| ++||+.++..+.++++.+++
T Consensus 100 ~---~--~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 174 (205)
T cd03226 100 L---D--AGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAA 174 (205)
T ss_pred c---C--ccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH
Confidence 0 0 0112234556666664321 7889999999999 69999999999999998865
Q ss_pred -CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 137 -NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 137 -g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
|.|||++ ||+++++..+||++
T Consensus 175 ~~~tii~~------sH~~~~~~~~~d~i 196 (205)
T cd03226 175 QGKAVIVI------THDYEFLAKVCDRV 196 (205)
T ss_pred CCCEEEEE------eCCHHHHHHhCCEE
Confidence 8999999 99999999999984
No 31
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.98 E-value=1e-32 Score=213.89 Aligned_cols=157 Identities=16% Similarity=0.168 Sum_probs=120.5
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh---ccCCceeeEEEeecCCcccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI---RQGGQRVGFEVVTLDDRRAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~---~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~ 77 (193)
|+|.+||+++|+|+||||||||.|+|+|+.+|++|+|.++|+..... +...+.+.++||+|....++.........+
T Consensus 28 ~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~E 107 (252)
T COG1124 28 LEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSE 107 (252)
T ss_pred EEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhh
Confidence 67899999999999999999999999999999999999999876322 245678899999995444444322111111
Q ss_pred CCCCC-cccceeeehhhhhhhccccc---------c------------cCCCCCEEEEecC-CCccccccchHHHHHHHH
Q 029421 78 SYRWP-TVGRYKVDVASFEAIALPEL---------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRIL 134 (193)
Q Consensus 78 ~~~~~-~~~~~~~~~~~l~~~~l~~~---------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l 134 (193)
..... .....+.+.++++.+|+..- + |..+|++||+||| ++||...+.++++++..+
T Consensus 108 pl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l 187 (252)
T COG1124 108 PLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLEL 187 (252)
T ss_pred hhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHH
Confidence 11000 00111225677777777531 1 8899999999999 799999999999999988
Q ss_pred hC--CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 135 ES--NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 135 ~~--g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
++ +.|+|++ |||+..+..+|||+
T Consensus 188 ~~~~~lt~l~I------sHdl~~v~~~cdRi 212 (252)
T COG1124 188 KKERGLTYLFI------SHDLALVEHMCDRI 212 (252)
T ss_pred HHhcCceEEEE------eCcHHHHHHHhhhe
Confidence 75 8999999 99999999999995
No 32
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.98 E-value=8e-33 Score=232.12 Aligned_cols=156 Identities=13% Similarity=0.187 Sum_probs=124.3
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeec--CCcccccccccCCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTL--DDRRAPLASINASSPES 78 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~~~ 78 (193)
|++++|++++|+||||||||||||+|+|+++|++|+|.++|.++...+..++.+||+||++ ++.+++.+|+.+.....
T Consensus 35 l~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~ 114 (375)
T PRK09452 35 LTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQ 114 (375)
T ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhc
Confidence 5789999999999999999999999999999999999999998754444457899999987 45667888876543211
Q ss_pred CCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh-C
Q 029421 79 YRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE-S 136 (193)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~-~ 136 (193)
............++++.+++..+. |+.+|+++||||| ++||+..+..+...++.+. +
T Consensus 115 -~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~ 193 (375)
T PRK09452 115 -KTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRK 193 (375)
T ss_pred -CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHh
Confidence 111111122345566666765432 8899999999999 7999999999999998875 4
Q ss_pred -CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 137 -NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 137 -g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
|.|+|++ |||..++..+||++
T Consensus 194 ~g~tiI~v------THd~~ea~~laDri 215 (375)
T PRK09452 194 LGITFVFV------THDQEEALTMSDRI 215 (375)
T ss_pred cCCEEEEE------eCCHHHHHHhCCEE
Confidence 9999999 99999999999994
No 33
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.98 E-value=7e-33 Score=231.32 Aligned_cols=156 Identities=15% Similarity=0.296 Sum_probs=123.6
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc--cC----CceeeEEEeec--CCccccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR--QG----GQRVGFEVVTL--DDRRAPLASIN 72 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~--~~----~~~ig~~~q~~--~~~~~~~~~~~ 72 (193)
|+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... .. ++.++|+||++ ++..++.+|+.
T Consensus 14 ~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~TV~eNi~ 93 (363)
T TIGR01186 14 LAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMTILQNTS 93 (363)
T ss_pred EEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCCHHHHHH
Confidence 679999999999999999999999999999999999999999874321 11 56899999987 34457777765
Q ss_pred CCCCCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421 73 ASSPESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVL 131 (193)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll 131 (193)
+... ...+..........++++.+++..+. ++.+|+++||||| ++||+.++..+.+++
T Consensus 94 ~~~~-~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l 172 (363)
T TIGR01186 94 LGPE-LLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDEL 172 (363)
T ss_pred HHHH-HcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 4322 11222222233456677777776432 8899999999999 799999999999999
Q ss_pred HHHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 132 RILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 132 ~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
..+. + |+|||++ |||++++.++||++
T Consensus 173 ~~l~~~~~~Tii~v------THd~~ea~~~~drI 200 (363)
T TIGR01186 173 KKLQATLQKTIVFI------THDLDEAIRIGDRI 200 (363)
T ss_pred HHHHHhcCCEEEEE------eCCHHHHHHhCCEE
Confidence 8875 4 8999999 99999999999994
No 34
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.97 E-value=1.1e-32 Score=215.07 Aligned_cols=157 Identities=13% Similarity=0.235 Sum_probs=117.1
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh----hccCCceeeEEEeecC--CcccccccccCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE----IRQGGQRVGFEVVTLD--DRRAPLASINAS 74 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~----~~~~~~~ig~~~q~~~--~~~~~~~~~~~~ 74 (193)
|++++|++++|+||||||||||+++|+|+++|++|+|.++|.++.. ....++.++|++|++. +..+..+++.+.
T Consensus 21 ~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~ 100 (213)
T cd03262 21 LTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLA 100 (213)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCCCCcHHHHHHhH
Confidence 5789999999999999999999999999999999999999987631 1223567999999863 234555554332
Q ss_pred CCCCCCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHH
Q 029421 75 SPESYRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRI 133 (193)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~ 133 (193)
.................+.++.+++... + ++.+|+++||||| ++||+.++..+.++++.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 180 (213)
T cd03262 101 PIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKD 180 (213)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 1100011111111223445555665432 1 8899999999999 69999999999999998
Q ss_pred HhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 134 LES-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 134 l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
+++ |.|||++ ||+.+++.++||++
T Consensus 181 ~~~~~~tvi~~------sh~~~~~~~~~d~i 205 (213)
T cd03262 181 LAEEGMTMVVV------THEMGFAREVADRV 205 (213)
T ss_pred HHHcCCEEEEE------eCCHHHHHHhCCEE
Confidence 876 8999999 99999999999984
No 35
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.97 E-value=9.1e-33 Score=230.90 Aligned_cols=156 Identities=13% Similarity=0.186 Sum_probs=123.7
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCC--CCeEEeceEchhhccCCceeeEEEeec--CCcccccccccCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASN--PSLKVQGFYTGEIRQGGQRVGFEVVTL--DDRRAPLASINASSP 76 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~--G~i~~~g~~~~~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~ 76 (193)
|+|++|++++|+||||||||||||+|+|+++|++ |+|.++|.++......++.+||+||++ ++.+++.+|+.+...
T Consensus 26 l~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~ 105 (362)
T TIGR03258 26 LEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLR 105 (362)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHH
Confidence 5789999999999999999999999999999999 999999998754333456799999987 455677777655432
Q ss_pred CCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh
Q 029421 77 ESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE 135 (193)
Q Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~ 135 (193)
.. ............++++.+++.++. |+.+|+++||||| ++||+..+..+.+.++.+.
T Consensus 106 ~~-~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~ 184 (362)
T TIGR03258 106 AQ-KMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALH 184 (362)
T ss_pred Hc-CCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHH
Confidence 11 111111223355677777776432 8899999999999 7999999999999998875
Q ss_pred C---CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 136 S---NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 136 ~---g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
+ |.|+|++ |||.+++..+||++
T Consensus 185 ~~~~g~til~v------THd~~ea~~l~dri 209 (362)
T TIGR03258 185 EELPELTILCV------THDQDDALTLADKA 209 (362)
T ss_pred HhCCCCEEEEE------eCCHHHHHHhCCEE
Confidence 3 6899999 99999999999994
No 36
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=2.9e-32 Score=212.54 Aligned_cols=156 Identities=13% Similarity=0.173 Sum_probs=117.9
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecC--CcccccccccCCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD--DRRAPLASINASSPES 78 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~~~ 78 (193)
|++.+|++++|+||||||||||+++|+|+++|++|+|.++|.++......++.++|++|++. +..++.+++.+.....
T Consensus 19 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~ 98 (211)
T cd03298 19 LTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPG 98 (211)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhcccccc
Confidence 57899999999999999999999999999999999999999887433223467999999863 2345566654322110
Q ss_pred CCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh-C
Q 029421 79 YRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE-S 136 (193)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~-~ 136 (193)
... .........++++.+++... + ++.+|+++||||| ++||+.++..+.++++.++ +
T Consensus 99 ~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~ 177 (211)
T cd03298 99 LKL-TAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAE 177 (211)
T ss_pred cCc-cHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh
Confidence 000 00111223455666665432 1 7899999999999 6999999999999998875 4
Q ss_pred -CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 137 -NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 137 -g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
|.|||++ ||+++++..+||++
T Consensus 178 ~~~tii~~------sH~~~~~~~~~d~i 199 (211)
T cd03298 178 TKMTVLMV------THQPEDAKRLAQRV 199 (211)
T ss_pred cCCEEEEE------ecCHHHHHhhhCEE
Confidence 8999999 99999999999984
No 37
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=8e-34 Score=214.14 Aligned_cols=173 Identities=14% Similarity=0.189 Sum_probs=132.2
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc---cCCceeeEEEeec--CCcccccccccCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR---QGGQRVGFEVVTL--DDRRAPLASINASS 75 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~---~~~~~ig~~~q~~--~~~~~~~~~~~~~~ 75 (193)
|+|++||+++|+|||||||||.+.++.|+++|++|+|.++|.++...+ +.+..+||.||++ +..+++.+|+....
T Consensus 25 l~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~vl 104 (243)
T COG1137 25 LEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVL 104 (243)
T ss_pred EEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcccccccchHhhcCcHHHHHHHHH
Confidence 578999999999999999999999999999999999999999985433 3456799999988 44567777765433
Q ss_pred CCCCCC-Ccccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHH
Q 029421 76 PESYRW-PTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRI 133 (193)
Q Consensus 76 ~~~~~~-~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~ 133 (193)
...... ..........+.++.+.+.++. |+.+|++++|||| +|.||.+...+..+++.
T Consensus 105 E~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~ 184 (243)
T COG1137 105 EIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKH 184 (243)
T ss_pred hhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHH
Confidence 321111 1111122234666766665442 8899999999999 89999999999999999
Q ss_pred HhC-CCcEEEEecCCCCCCChhHHHHHhcCCCcEE--EEeCCCChhHHH
Q 029421 134 LES-NIPVLASIPAPKSGRDIPAVARLRNHPGATI--FTLSPGNRDSLK 179 (193)
Q Consensus 134 l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~~~~~--~~~~~~~~~~l~ 179 (193)
|++ |..|+++ .|+..+...+|||..... .++..++++++.
T Consensus 185 L~~rgiGvLIT------DHNVREtL~i~dRaYIi~~G~vla~G~p~ei~ 227 (243)
T COG1137 185 LKDRGIGVLIT------DHNVRETLDICDRAYIISDGKVLAEGSPEEIV 227 (243)
T ss_pred HHhCCceEEEc------cccHHHHHhhhheEEEEecCeEEecCCHHHHh
Confidence 988 9999999 999999999999943221 145555655443
No 38
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.97 E-value=2.1e-32 Score=213.52 Aligned_cols=156 Identities=13% Similarity=0.168 Sum_probs=117.1
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecC--CcccccccccCCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD--DRRAPLASINASSPES 78 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~~~ 78 (193)
|+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++......++.++|++|++. ...+..+++.+....
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~- 99 (213)
T cd03301 21 LDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKL- 99 (213)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHHHHHHHHh-
Confidence 57899999999999999999999999999999999999999887433333467999999862 234555554332110
Q ss_pred CCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh-C
Q 029421 79 YRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE-S 136 (193)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~-~ 136 (193)
.............++++.+++... + ++.+|+++||||| ++||+.++..+.++++.+. +
T Consensus 100 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 179 (213)
T cd03301 100 RKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQR 179 (213)
T ss_pred cCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH
Confidence 011111111223445666665432 1 7899999999999 6999999999999998875 3
Q ss_pred -CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 137 -NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 137 -g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
|.|||++ |||.+++..+||++
T Consensus 180 ~~~tvi~~------sH~~~~~~~~~d~i 201 (213)
T cd03301 180 LGTTTIYV------THDQVEAMTMADRI 201 (213)
T ss_pred cCCEEEEE------eCCHHHHHHhcCeE
Confidence 8999999 99999999999984
No 39
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.97 E-value=2e-32 Score=224.24 Aligned_cols=156 Identities=15% Similarity=0.110 Sum_probs=118.7
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh-ccCCceeeEEEeec--CCcccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI-RQGGQRVGFEVVTL--DDRRAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~-~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~~ 77 (193)
|++++|++++|+||||||||||+|+|+|+++|++|+|.++|.++... ...++.+||+||++ ++..++.+++.+...
T Consensus 23 ~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~- 101 (301)
T TIGR03522 23 FEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAG- 101 (301)
T ss_pred EEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHH-
Confidence 57899999999999999999999999999999999999999886432 23356799999986 333455665433211
Q ss_pred CCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHHhC
Q 029421 78 SYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILES 136 (193)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~ 136 (193)
..............+.++.+++.... ++.+|+++||||| +|||+.++..+.++++.+++
T Consensus 102 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~ 181 (301)
T TIGR03522 102 IYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK 181 (301)
T ss_pred HcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC
Confidence 01111111112234555666654321 8899999999999 69999999999999999877
Q ss_pred CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 137 NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 137 g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
+.|||++ ||+++++.++||++
T Consensus 182 ~~tiii~------sH~l~~~~~~~d~i 202 (301)
T TIGR03522 182 DKTIILS------THIMQEVEAICDRV 202 (301)
T ss_pred CCEEEEE------cCCHHHHHHhCCEE
Confidence 8999999 99999999999994
No 40
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=3.4e-32 Score=216.02 Aligned_cols=157 Identities=15% Similarity=0.203 Sum_probs=117.3
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecC--CcccccccccCCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD--DRRAPLASINASSPES 78 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~~~ 78 (193)
|++++|++++|+||||||||||+++|+|+++|++|+|.++|.++......++.++|++|++. +..++.+++.+.....
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~ 102 (239)
T cd03296 23 LDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVK 102 (239)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEecCCcccCCCCHHHHHhhhhhhc
Confidence 57899999999999999999999999999999999999999886433223467999999862 2345556554322110
Q ss_pred CCC---Ccccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHHH
Q 029421 79 YRW---PTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRIL 134 (193)
Q Consensus 79 ~~~---~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l 134 (193)
..+ ..........++++.+++... + ++.+|+++||||| ++||+.++..+.++++.+
T Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~ 182 (239)
T cd03296 103 PRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRL 182 (239)
T ss_pred cccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 000 000111223345666665432 1 8899999999999 699999999999999887
Q ss_pred h-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 135 E-S-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 135 ~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
+ + |.|||++ |||.+.+..+||++
T Consensus 183 ~~~~~~tvii~------sH~~~~~~~~~d~i 207 (239)
T cd03296 183 HDELHVTTVFV------THDQEEALEVADRV 207 (239)
T ss_pred HHHcCCEEEEE------eCCHHHHHHhCCEE
Confidence 5 3 8999999 99999999999984
No 41
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.97 E-value=1.9e-32 Score=214.02 Aligned_cols=156 Identities=19% Similarity=0.262 Sum_probs=116.4
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh-----ccCCceeeEEEeecC--CcccccccccC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI-----RQGGQRVGFEVVTLD--DRRAPLASINA 73 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~-----~~~~~~ig~~~q~~~--~~~~~~~~~~~ 73 (193)
|+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ...++.++|++|++. +..+..+++.+
T Consensus 23 ~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~ 102 (214)
T TIGR02673 23 LHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVAL 102 (214)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCCcHHHHHHH
Confidence 67899999999999999999999999999999999999999886422 123467999999862 23455555433
Q ss_pred CCCCCCCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421 74 SSPESYRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLR 132 (193)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~ 132 (193)
..... ............+.++.+++... + ++.+|+++||||| ++||+.++..+.++++
T Consensus 103 ~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~ 181 (214)
T TIGR02673 103 PLEVR-GKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLK 181 (214)
T ss_pred HHHHc-CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 21100 00111111223345555555422 1 8899999999999 6999999999999999
Q ss_pred HHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 133 ILES-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 133 ~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+++ |.|||++ ||+.+++..+||++
T Consensus 182 ~~~~~~~tii~~------tH~~~~~~~~~d~i 207 (214)
T TIGR02673 182 RLNKRGTTVIVA------THDLSLVDRVAHRV 207 (214)
T ss_pred HHHHcCCEEEEE------eCCHHHHHHhcCEE
Confidence 8865 9999999 99999999999984
No 42
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.97 E-value=2.9e-32 Score=213.48 Aligned_cols=155 Identities=16% Similarity=0.241 Sum_probs=115.2
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc------cCCceeeEEEeec--CCccccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR------QGGQRVGFEVVTL--DDRRAPLASIN 72 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~------~~~~~ig~~~q~~--~~~~~~~~~~~ 72 (193)
|++++|++++|+||||||||||+++|+|+++|++|+|.++|.++.... ..++.++|++|++ +...++.+++.
T Consensus 25 ~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~ 104 (218)
T cd03255 25 LSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVE 104 (218)
T ss_pred EEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHH
Confidence 578999999999999999999999999999999999999998764321 1245799999986 23345555543
Q ss_pred CCCCCCCCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421 73 ASSPESYRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVL 131 (193)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll 131 (193)
+.... .............+.++.+++... + ++.+|+++||||| ++||+.++..+.+++
T Consensus 105 ~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l 183 (218)
T cd03255 105 LPLLL-AGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELL 183 (218)
T ss_pred HHHhh-cCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 32110 011111111223455666666432 1 8899999999999 699999999999999
Q ss_pred HHHhC--CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 132 RILES--NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 132 ~~l~~--g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
+.+++ |+|||++ ||+.+++. +||++
T Consensus 184 ~~~~~~~~~tii~~------sH~~~~~~-~~d~v 210 (218)
T cd03255 184 RELNKEAGTTIVVV------THDPELAE-YADRI 210 (218)
T ss_pred HHHHHhcCCeEEEE------ECCHHHHh-hhcEE
Confidence 98754 8999999 99999886 89873
No 43
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.97 E-value=6.6e-32 Score=228.02 Aligned_cols=157 Identities=17% Similarity=0.198 Sum_probs=121.8
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh--hccCCceeeEEEeecC--CcccccccccCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE--IRQGGQRVGFEVVTLD--DRRAPLASINASSP 76 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~--~~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~ 76 (193)
|+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. .+..++++||++|++. ...++.+++.+...
T Consensus 24 ~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~ 103 (402)
T PRK09536 24 LSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRT 103 (402)
T ss_pred EEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccc
Confidence 5789999999999999999999999999999999999999998743 2334577999999862 34566666544321
Q ss_pred CCC-CCC--cccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421 77 ESY-RWP--TVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLR 132 (193)
Q Consensus 77 ~~~-~~~--~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~ 132 (193)
... .+. .........+.++.+++.++. |+++|++|||||| ++||+.++..+.++++
T Consensus 104 ~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~ 183 (402)
T PRK09536 104 PHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVR 183 (402)
T ss_pred hhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHH
Confidence 110 111 111223345666777765432 8899999999999 6999999999999999
Q ss_pred HHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 133 ILES-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 133 ~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+.+ |.|||++ |||++++.++||++
T Consensus 184 ~l~~~g~TIIiv------sHdl~~~~~~adri 209 (402)
T PRK09536 184 RLVDDGKTAVAA------IHDLDLAARYCDEL 209 (402)
T ss_pred HHHhcCCEEEEE------ECCHHHHHHhCCEE
Confidence 9876 9999999 99999999999994
No 44
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.97 E-value=2.3e-32 Score=224.15 Aligned_cols=156 Identities=18% Similarity=0.191 Sum_probs=117.1
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh-ccCCceeeEEEeecC--CcccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI-RQGGQRVGFEVVTLD--DRRAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~-~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~~ 77 (193)
|+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ...++.+||+||++. +..++.+++.+...
T Consensus 25 l~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~- 103 (303)
T TIGR01288 25 FTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGR- 103 (303)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHH-
Confidence 67999999999999999999999999999999999999999886322 223567999999862 33455555432111
Q ss_pred CCCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHHHhC
Q 029421 78 SYRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILES 136 (193)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~ 136 (193)
..............++++.+++... + ++.+|+++||||| +|||+.++..+.++++.+++
T Consensus 104 ~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~ 183 (303)
T TIGR01288 104 YFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA 183 (303)
T ss_pred HcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh
Confidence 0011111111122345555555432 1 8899999999999 69999999999999998866
Q ss_pred -CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 137 -NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 137 -g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
|.|||++ |||++++.++||++
T Consensus 184 ~g~til~~------sH~~~~~~~~~d~i 205 (303)
T TIGR01288 184 RGKTILLT------THFMEEAERLCDRL 205 (303)
T ss_pred CCCEEEEE------CCCHHHHHHhCCEE
Confidence 9999999 99999999999984
No 45
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=5e-32 Score=227.58 Aligned_cols=156 Identities=12% Similarity=0.153 Sum_probs=123.1
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeec--CCcccccccccCCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTL--DDRRAPLASINASSPES 78 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~~~ 78 (193)
|+|++|++++|+||||||||||||+|+|+.+|++|+|.++|+++......++.+||+||++ ++.+++.+|+.+.....
T Consensus 40 l~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~ 119 (377)
T PRK11607 40 LTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQD 119 (377)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHc
Confidence 5789999999999999999999999999999999999999998754444567899999987 55567888876543211
Q ss_pred CCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHH-hC
Q 029421 79 YRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRIL-ES 136 (193)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l-~~ 136 (193)
............++++.+++..+. ++.+|++|||||| ++||+..+..+.+.++.+ ++
T Consensus 120 -~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~ 198 (377)
T PRK11607 120 -KLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILER 198 (377)
T ss_pred -CCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 111111122345666777765432 8899999999999 799999998888777665 44
Q ss_pred -CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 137 -NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 137 -g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
|.|+|++ |||.+++..+||++
T Consensus 199 ~g~tii~v------THd~~ea~~laDri 220 (377)
T PRK11607 199 VGVTCVMV------THDQEEAMTMAGRI 220 (377)
T ss_pred cCCEEEEE------cCCHHHHHHhCCEE
Confidence 9999999 99999999999994
No 46
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.97 E-value=2.5e-32 Score=212.83 Aligned_cols=156 Identities=17% Similarity=0.234 Sum_probs=115.9
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeec---CCcccccccccCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTL---DDRRAPLASINASS 75 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~---~~~~~~~~~~~~~~ 75 (193)
|++++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ...++.++|++|++ ....+..+++.+..
T Consensus 22 ~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~ 101 (211)
T cd03225 22 LTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGL 101 (211)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcHHHHHHHHH
Confidence 57899999999999999999999999999999999999999876422 22346799999975 22345555543311
Q ss_pred CCCCCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHHH
Q 029421 76 PESYRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRIL 134 (193)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l 134 (193)
.. .............+.++.+++... + ++.+|+++||||| ++||+.++..+.++++.+
T Consensus 102 ~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~ 180 (211)
T cd03225 102 EN-LGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKL 180 (211)
T ss_pred HH-cCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 10 000100111223345555555421 1 8899999999999 699999999999999988
Q ss_pred hC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 135 ES-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 135 ~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
++ |.|||++ |||++++..+||++
T Consensus 181 ~~~~~tvi~~------sH~~~~~~~~~d~i 204 (211)
T cd03225 181 KAEGKTIIIV------THDLDLLLELADRV 204 (211)
T ss_pred HHcCCEEEEE------eCCHHHHHHhCCEE
Confidence 65 8999999 99999999999984
No 47
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.97 E-value=3.1e-32 Score=228.56 Aligned_cols=156 Identities=13% Similarity=0.144 Sum_probs=121.2
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeec--CCcccccccccCCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTL--DDRRAPLASINASSPES 78 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~~~ 78 (193)
|+|++|++++|+||||||||||+|+|+|+++|++|+|.++|+++......++.+||+||++ ++..++.+|+.+.....
T Consensus 24 l~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~ 103 (369)
T PRK11000 24 LDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA 103 (369)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhc
Confidence 5789999999999999999999999999999999999999998754333346799999986 34456777765432110
Q ss_pred CCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh-C
Q 029421 79 YRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE-S 136 (193)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~-~ 136 (193)
............++++.+++..+. |+.+|++|||||| ++||+.++..+.++++.+. +
T Consensus 104 -~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~ 182 (369)
T PRK11000 104 -GAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKR 182 (369)
T ss_pred -CCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHH
Confidence 111111122345566777765321 8899999999999 6999999999999998874 4
Q ss_pred -CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 137 -NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 137 -g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
|.|+|++ |||.+++..+||++
T Consensus 183 ~g~tvI~v------THd~~~~~~~~d~i 204 (369)
T PRK11000 183 LGRTMIYV------THDQVEAMTLADKI 204 (369)
T ss_pred hCCEEEEE------eCCHHHHHHhCCEE
Confidence 8999999 99999999999984
No 48
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.97 E-value=1.9e-32 Score=214.47 Aligned_cols=156 Identities=19% Similarity=0.226 Sum_probs=118.1
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh-hccCCceeeEEEeec--CCcccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE-IRQGGQRVGFEVVTL--DDRRAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~-~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~~ 77 (193)
|++++|++++|+||||||||||+++|+|+++|++|+|.++|+++.. ....++.++|++|++ ++..++.+++.+....
T Consensus 26 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~ 105 (218)
T cd03266 26 FTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGL 105 (218)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999988642 122346799999986 2334555554332110
Q ss_pred CCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHHhC
Q 029421 78 SYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILES 136 (193)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~ 136 (193)
.............++++.+++.+.. ++.+|+++||||| ++||+.++..+.++++.+++
T Consensus 106 -~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~ 184 (218)
T cd03266 106 -YGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRA 184 (218)
T ss_pred -cCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHH
Confidence 0111111122334566666665321 8899999999999 69999999999999998865
Q ss_pred -CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 137 -NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 137 -g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
|.|||++ ||+.+++..+||++
T Consensus 185 ~~~tii~~------tH~~~~~~~~~d~i 206 (218)
T cd03266 185 LGKCILFS------THIMQEVERLCDRV 206 (218)
T ss_pred CCCEEEEE------eCCHHHHHHhcCEE
Confidence 8999999 99999999999983
No 49
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.97 E-value=4.1e-32 Score=215.02 Aligned_cols=157 Identities=18% Similarity=0.231 Sum_probs=117.5
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc--c-CCceeeEEEeec--CCcccccccccCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR--Q-GGQRVGFEVVTL--DDRRAPLASINASS 75 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~--~-~~~~ig~~~q~~--~~~~~~~~~~~~~~ 75 (193)
|+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.... . .+..++|+||++ .+..++.+++.+..
T Consensus 21 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~ 100 (236)
T cd03219 21 FSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAA 100 (236)
T ss_pred EEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHHHHHHHHH
Confidence 578999999999999999999999999999999999999998864321 1 234699999986 23345555543321
Q ss_pred CCCCCC---------Ccccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccc
Q 029421 76 PESYRW---------PTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSS 125 (193)
Q Consensus 76 ~~~~~~---------~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~ 125 (193)
...... ..........+.++.+++... + ++.+|+++||||| ++||+.++.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~ 180 (236)
T cd03219 101 QARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETE 180 (236)
T ss_pred hhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 110000 001111223456666666432 1 7899999999999 699999999
Q ss_pred hHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 126 FFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 126 ~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+.++++.+++ |.|||++ |||++++..+||++
T Consensus 181 ~l~~~l~~~~~~~~tii~v------sH~~~~~~~~~d~i 213 (236)
T cd03219 181 ELAELIRELRERGITVLLV------EHDMDVVMSLADRV 213 (236)
T ss_pred HHHHHHHHHHHCCCEEEEE------ecCHHHHHHhCCEE
Confidence 99999998875 8999999 99999999999984
No 50
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.97 E-value=4e-32 Score=212.06 Aligned_cols=154 Identities=20% Similarity=0.249 Sum_probs=115.8
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecCC----cccccccccCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDD----RRAPLASINASSP 76 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~----~~~~~~~~~~~~~ 76 (193)
|+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.. .++.++|++|++.. ..++.+++.+...
T Consensus 20 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~---~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~ 96 (213)
T cd03235 20 FEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEK---ERKRIGYVPQRRSIDRDFPISVRDVVLMGLY 96 (213)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHH---HHhheEEeccccccccCCCCcHHHHHHhccc
Confidence 6789999999999999999999999999999999999999987642 24579999998631 1355555443221
Q ss_pred CCCC---CCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421 77 ESYR---WPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLR 132 (193)
Q Consensus 77 ~~~~---~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~ 132 (193)
.... ...........+.++.+++... + ++.+|+++||||| ++||+.++..+.++++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~ 176 (213)
T cd03235 97 GHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLR 176 (213)
T ss_pred cccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 1000 0011111223445555555421 1 7899999999999 6999999999999999
Q ss_pred HHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 133 ILES-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 133 ~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+++ |.|||++ |||.+++.++||++
T Consensus 177 ~~~~~~~tvi~~------sH~~~~~~~~~d~i 202 (213)
T cd03235 177 ELRREGMTILVV------THDLGLVLEYFDRV 202 (213)
T ss_pred HHHhcCCEEEEE------eCCHHHHHHhcCEE
Confidence 8875 8999999 99999999999983
No 51
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=3.2e-32 Score=212.16 Aligned_cols=154 Identities=19% Similarity=0.234 Sum_probs=115.6
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecC--CcccccccccCCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD--DRRAPLASINASSPES 78 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~~~ 78 (193)
|++.+|++++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++.++|++|++. +..+..+++.+... .
T Consensus 21 ~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~-~ 97 (210)
T cd03269 21 FSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI--AARNRIGYLPEERGLYPKMKVIDQLVYLAQ-L 97 (210)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH--HHHccEEEeccCCcCCcCCcHHHHHHHHHH-H
Confidence 5789999999999999999999999999999999999999987643 23457999999862 23455555432110 0
Q ss_pred CCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHHHhC-
Q 029421 79 YRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILES- 136 (193)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~- 136 (193)
.............+.++.+++... + ++.+|+++||||| ++||+.++..+.++++.+++
T Consensus 98 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~ 177 (210)
T cd03269 98 KGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARA 177 (210)
T ss_pred cCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC
Confidence 011111111223455566665422 1 7899999999999 69999999999999988865
Q ss_pred CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 137 NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 137 g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
|.|||++ ||+.+++.++||++
T Consensus 178 ~~tii~~------sH~~~~~~~~~d~i 198 (210)
T cd03269 178 GKTVILS------THQMELVEELCDRV 198 (210)
T ss_pred CCEEEEE------CCCHHHHHHhhhEE
Confidence 8999999 99999999999983
No 52
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.97 E-value=1.7e-31 Score=212.39 Aligned_cols=157 Identities=17% Similarity=0.252 Sum_probs=116.8
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh-----ccCCceeeEEEeec--CCcccccccccC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI-----RQGGQRVGFEVVTL--DDRRAPLASINA 73 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~-----~~~~~~ig~~~q~~--~~~~~~~~~~~~ 73 (193)
|++++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ...++.++|+||++ .+..+..+++.+
T Consensus 23 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~ 102 (243)
T TIGR02315 23 LNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLH 102 (243)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccccccHHHHHhh
Confidence 67899999999999999999999999999999999999999886421 12346799999986 233455555443
Q ss_pred CCCCCC-------CCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccc
Q 029421 74 SSPESY-------RWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSS 125 (193)
Q Consensus 74 ~~~~~~-------~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~ 125 (193)
...... ............+.++.+++... + ++.+|+++||||| ++||+.++.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~ 182 (243)
T TIGR02315 103 GRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSK 182 (243)
T ss_pred cccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 211100 00011111223455666665432 1 8899999999999 699999999
Q ss_pred hHHHHHHHHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 126 FFPAVLRILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 126 ~~~~ll~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+.++++.+. + |+|||++ ||+.+.+.++||++
T Consensus 183 ~l~~~l~~~~~~~~~tiii~------tH~~~~~~~~~d~v 216 (243)
T TIGR02315 183 QVMDYLKRINKEDGITVIIN------LHQVDLAKKYADRI 216 (243)
T ss_pred HHHHHHHHHHHHcCCEEEEE------eCCHHHHHHhcCeE
Confidence 9999998874 4 8999999 99999999999984
No 53
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.97 E-value=4e-32 Score=211.34 Aligned_cols=152 Identities=16% Similarity=0.209 Sum_probs=115.8
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeec--CCcccccccccCCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTL--DDRRAPLASINASSPES 78 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~~~ 78 (193)
|++++|++++|+||||||||||+++|+|+++|++|+|.++|.++......++.++|+||++ .+..++.+++.+.....
T Consensus 21 ~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~ 100 (208)
T cd03268 21 LHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARLL 100 (208)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCCCccCccCcHHHHHHHHHHhc
Confidence 5789999999999999999999999999999999999999987643223345799999976 22345555543321100
Q ss_pred CCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHHHhC-
Q 029421 79 YRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILES- 136 (193)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~- 136 (193)
.. ......+.++.+++... + ++.+|+++||||| ++||+.++..+.++++.+++
T Consensus 101 -~~----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 175 (208)
T cd03268 101 -GI----RKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQ 175 (208)
T ss_pred -CC----cHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHC
Confidence 00 11223345555555332 1 8899999999999 69999999999999998875
Q ss_pred CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 137 NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 137 g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
|.|+|++ |||.+++..+||++
T Consensus 176 ~~tii~~------tH~~~~~~~~~d~v 196 (208)
T cd03268 176 GITVLIS------SHLLSEIQKVADRI 196 (208)
T ss_pred CCEEEEE------cCCHHHHHHhcCEE
Confidence 8999999 99999999999983
No 54
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=5e-32 Score=216.68 Aligned_cols=164 Identities=16% Similarity=0.284 Sum_probs=135.9
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh-----hc-cCCceeeEEEeec--CCccccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE-----IR-QGGQRVGFEVVTL--DDRRAPLASIN 72 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~-----~~-~~~~~ig~~~q~~--~~~~~~~~~~~ 72 (193)
|+|++||+++|+|-||||||||+|+++++++|++|+|.++|.++.. .+ .++++++++||.+ .+..++++|..
T Consensus 49 l~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~ 128 (386)
T COG4175 49 LDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVA 128 (386)
T ss_pred eeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhh
Confidence 6799999999999999999999999999999999999999998732 22 2357899999988 57788888877
Q ss_pred CCCCCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421 73 ASSPESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVL 131 (193)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll 131 (193)
+... ....+..+..++..++++.+|+..+. |+.+|++|++||| ++|||.-+...++-+
T Consensus 129 fGLe-v~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeL 207 (386)
T COG4175 129 FGLE-VQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDEL 207 (386)
T ss_pred ccee-ecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHH
Confidence 7654 23345555666778888988887654 8999999999999 899999998887776
Q ss_pred HHHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeC
Q 029421 132 RILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLS 171 (193)
Q Consensus 132 ~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~ 171 (193)
..+. + ++||+++ |||++++.++.||+ +|.++-+.
T Consensus 208 l~Lq~~l~KTIvFi------tHDLdEAlriG~rIaimkdG~ivQ~G 247 (386)
T COG4175 208 LELQAKLKKTIVFI------THDLDEALRIGDRIAIMKDGEIVQVG 247 (386)
T ss_pred HHHHHHhCCeEEEE------ecCHHHHHhccceEEEecCCeEEEeC
Confidence 6665 4 9999999 99999999999994 56666544
No 55
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=5.3e-32 Score=212.41 Aligned_cols=153 Identities=17% Similarity=0.223 Sum_probs=115.5
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecC--CcccccccccCCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD--DRRAPLASINASSPES 78 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~~~ 78 (193)
|+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.. .++.++|++|++. +..+..+++.+....
T Consensus 25 ~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~---~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~- 100 (220)
T cd03293 25 LSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG---PGPDRGYVFQQDALLPWLTVLDNVALGLEL- 100 (220)
T ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc---ccCcEEEEecccccccCCCHHHHHHHHHHH-
Confidence 5789999999999999999999999999999999999999987642 2467999999762 234555554332110
Q ss_pred CCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh-C
Q 029421 79 YRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE-S 136 (193)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~-~ 136 (193)
.............+.++.+++.+. + ++.+|+++||||| ++||+.++..+.++++.+. +
T Consensus 101 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~ 180 (220)
T cd03293 101 QGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRE 180 (220)
T ss_pred cCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 011111111223455666665432 1 7899999999999 6999999999999998874 4
Q ss_pred -CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 137 -NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 137 -g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
|.|||++ ||+++++..+||++
T Consensus 181 ~~~tiii~------sH~~~~~~~~~d~i 202 (220)
T cd03293 181 TGKTVLLV------THDIDEAVFLADRV 202 (220)
T ss_pred cCCEEEEE------ecCHHHHHHhCCEE
Confidence 8999999 99999999999983
No 56
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.97 E-value=3.7e-32 Score=212.26 Aligned_cols=156 Identities=16% Similarity=0.241 Sum_probs=116.3
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh-----ccCCceeeEEEeec--CCcccccccccC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI-----RQGGQRVGFEVVTL--DDRRAPLASINA 73 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~-----~~~~~~ig~~~q~~--~~~~~~~~~~~~ 73 (193)
|++++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ...++.++|++|++ .+..+..+++.+
T Consensus 22 l~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~ 101 (214)
T cd03292 22 ISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAF 101 (214)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCcHHHHHHH
Confidence 57899999999999999999999999999999999999999876321 12346799999986 233455555433
Q ss_pred CCCCCCCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421 74 SSPESYRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLR 132 (193)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~ 132 (193)
.... .............+.++.+++... + ++.+|+++||||| ++||+.++..+.++++
T Consensus 102 ~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~ 180 (214)
T cd03292 102 ALEV-TGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLK 180 (214)
T ss_pred HHHH-cCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHH
Confidence 2110 001111111223345555555432 1 8899999999999 6999999999999999
Q ss_pred HHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 133 ILES-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 133 ~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+++ |.|||++ ||+.+.+..+||++
T Consensus 181 ~~~~~~~tiiiv------tH~~~~~~~~~d~i 206 (214)
T cd03292 181 KINKAGTTVVVA------THAKELVDTTRHRV 206 (214)
T ss_pred HHHHcCCEEEEE------eCCHHHHHHhCCEE
Confidence 8865 8999999 99999999999883
No 57
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.97 E-value=5.9e-32 Score=214.76 Aligned_cols=157 Identities=15% Similarity=0.190 Sum_probs=117.7
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh----ccCCceeeEEEeec--CCcccccccccCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI----RQGGQRVGFEVVTL--DDRRAPLASINAS 74 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~----~~~~~~ig~~~q~~--~~~~~~~~~~~~~ 74 (193)
|++++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ...++.++|++|++ .+..++.+++.+.
T Consensus 22 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~ 101 (240)
T PRK09493 22 LNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFG 101 (240)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcHHHHHHhH
Confidence 57899999999999999999999999999999999999999886421 22346799999986 2334555554332
Q ss_pred CCCCCCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHH
Q 029421 75 SPESYRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRI 133 (193)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~ 133 (193)
.................++++.+++... + ++.+|+++||||| ++||+.++..+.++++.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 181 (240)
T PRK09493 102 PLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQD 181 (240)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 1100011111111223456666666432 1 7899999999999 69999999999999998
Q ss_pred HhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 134 LES-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 134 l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
+++ |.|||++ ||+.+++..+||++
T Consensus 182 ~~~~~~tiii~------sH~~~~~~~~~d~i 206 (240)
T PRK09493 182 LAEEGMTMVIV------THEIGFAEKVASRL 206 (240)
T ss_pred HHHcCCEEEEE------eCCHHHHHHhCCEE
Confidence 865 8999999 99999999999984
No 58
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=8.1e-32 Score=211.35 Aligned_cols=156 Identities=19% Similarity=0.234 Sum_probs=116.0
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh-ccCCceeeEEEeecC--CcccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI-RQGGQRVGFEVVTLD--DRRAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~-~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~~ 77 (193)
|++.+|++++|+||||||||||+++|+|+++|++|+|.++|.+.... ...+++++|+||++. +..++.+++.+....
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~ 100 (220)
T cd03265 21 FRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARL 100 (220)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecCCccccccCcHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999876321 223457999999862 233455544321110
Q ss_pred CCCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh-
Q 029421 78 SYRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE- 135 (193)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~- 135 (193)
.............++++.+++... + ++.+|+++|+||| ++||+.++..+.++++.+.
T Consensus 101 -~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 179 (220)
T cd03265 101 -YGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKE 179 (220)
T ss_pred -cCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHH
Confidence 001111111223455666666432 1 8899999999999 6999999999999998875
Q ss_pred C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 136 S-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 136 ~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
+ |.|||++ |||.+++..+||++
T Consensus 180 ~~~~tvi~~------tH~~~~~~~~~d~i 202 (220)
T cd03265 180 EFGMTILLT------THYMEEAEQLCDRV 202 (220)
T ss_pred hcCCEEEEE------eCCHHHHHHhCCEE
Confidence 4 8999999 99999999999983
No 59
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=7e-32 Score=219.71 Aligned_cols=156 Identities=15% Similarity=0.205 Sum_probs=118.6
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh----ccCCceeeEEEeecC---CcccccccccC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI----RQGGQRVGFEVVTLD---DRRAPLASINA 73 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~----~~~~~~ig~~~q~~~---~~~~~~~~~~~ 73 (193)
|+|.+||+++|+||||||||||+++|+|+++|++|+|.++|+++... ...++.+||+||++. ...++.+++.+
T Consensus 28 ~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~ 107 (287)
T PRK13637 28 IEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAF 107 (287)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhccccccHHHHHHh
Confidence 57899999999999999999999999999999999999999987432 233568999999862 12355555433
Q ss_pred CCCCCCCCCcccceeeehhhhhhhccc--ccc--------------------cCCCCCEEEEecC-CCccccccchHHHH
Q 029421 74 SSPESYRWPTVGRYKVDVASFEAIALP--ELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAV 130 (193)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~l 130 (193)
.... .............++++.+++. ... ++.+|+++||||| ++||+.++..+.++
T Consensus 108 ~~~~-~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~ 186 (287)
T PRK13637 108 GPIN-LGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNK 186 (287)
T ss_pred HHHH-CCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHH
Confidence 2111 0111111122344566776764 221 8899999999999 69999999999999
Q ss_pred HHHHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 131 LRILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 131 l~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
++.++ + |.|||++ |||++++..+||++
T Consensus 187 l~~l~~~~g~tvi~v------tHd~~~~~~~~drv 215 (287)
T PRK13637 187 IKELHKEYNMTIILV------SHSMEDVAKLADRI 215 (287)
T ss_pred HHHHHHhcCCEEEEE------eCCHHHHHHhCCEE
Confidence 99885 4 8999999 99999999999994
No 60
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.97 E-value=1.4e-31 Score=209.10 Aligned_cols=156 Identities=12% Similarity=0.168 Sum_probs=117.7
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecC--CcccccccccCCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD--DRRAPLASINASSPES 78 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~~~ 78 (193)
|++++|++++|+||||||||||+++|+|+++|++|+|.++|.++......++.++|++|++. ...+..+++.+.....
T Consensus 19 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~ 98 (213)
T TIGR01277 19 LNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPG 98 (213)
T ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHhHhhcc
Confidence 57899999999999999999999999999999999999999886433334567999999873 2345666654321111
Q ss_pred CCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh-C
Q 029421 79 YRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE-S 136 (193)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~-~ 136 (193)
. ...........+.++.+++.+.. ++.+|+++||||| ++||+.++..+.++++.+. +
T Consensus 99 ~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~ 177 (213)
T TIGR01277 99 L-KLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSE 177 (213)
T ss_pred C-CccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh
Confidence 0 00101112234456666654321 7899999999999 6999999999999998875 4
Q ss_pred -CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 137 -NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 137 -g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
|.|||++ ||+.+++..+||++
T Consensus 178 ~~~tii~v------sh~~~~~~~~~d~v 199 (213)
T TIGR01277 178 RQRTLLMV------THHLSDARAIASQI 199 (213)
T ss_pred cCCEEEEE------eCCHHHHHhhcCeE
Confidence 8999999 99999999999984
No 61
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.97 E-value=8.4e-32 Score=212.74 Aligned_cols=156 Identities=15% Similarity=0.229 Sum_probs=116.1
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc--c-CCceeeEEEeec--CCcccccccccCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR--Q-GGQRVGFEVVTL--DDRRAPLASINASS 75 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~--~-~~~~ig~~~q~~--~~~~~~~~~~~~~~ 75 (193)
|++.+|++++|+||||||||||+++|+|+++|++|+|.++|++..... . .++.++|++|++ .+..++.+++.+..
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~ 100 (232)
T cd03218 21 LSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVL 100 (232)
T ss_pred eEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCcHHHHHHHHH
Confidence 578999999999999999999999999999999999999998763221 1 234699999976 23345555543321
Q ss_pred CCCCCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHHH
Q 029421 76 PESYRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRIL 134 (193)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l 134 (193)
.. .............++++.+++... + ++.+|+++||||| ++||+.++..+.++++.+
T Consensus 101 ~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~ 179 (232)
T cd03218 101 EI-RGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKIL 179 (232)
T ss_pred Hh-cCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHH
Confidence 10 011110111123345555555432 1 8899999999999 699999999999999988
Q ss_pred hC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 135 ES-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 135 ~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+ |.|||++ |||++.+.++||++
T Consensus 180 ~~~~~tii~~------sH~~~~~~~~~d~i 203 (232)
T cd03218 180 KDRGIGVLIT------DHNVRETLSITDRA 203 (232)
T ss_pred HHCCCEEEEE------eCCHHHHHHhCCEE
Confidence 76 8999999 99999999999984
No 62
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.97 E-value=6.9e-32 Score=211.65 Aligned_cols=156 Identities=12% Similarity=0.144 Sum_probs=116.0
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh-ccCCceeeEEEeecC--CcccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI-RQGGQRVGFEVVTLD--DRRAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~-~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~~ 77 (193)
|++++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ...++.++|++|++. ...+..+++.+...
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~- 101 (220)
T cd03263 23 LNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYAR- 101 (220)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHHHHHHHHH-
Confidence 57899999999999999999999999999999999999999886421 223457999999762 23445555432110
Q ss_pred CCCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHHHhC
Q 029421 78 SYRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILES 136 (193)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~ 136 (193)
..............+.++.+++... + ++.+|+++||||| ++||+.++..+.++++.+++
T Consensus 102 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~ 181 (220)
T cd03263 102 LKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK 181 (220)
T ss_pred HcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc
Confidence 0001111111223345555555432 1 8899999999999 69999999999999998876
Q ss_pred CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 137 NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 137 g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
+.|||++ ||+++.+.++||++
T Consensus 182 ~~tii~~------sH~~~~~~~~~d~i 202 (220)
T cd03263 182 GRSIILT------THSMDEAEALCDRI 202 (220)
T ss_pred CCEEEEE------cCCHHHHHHhcCEE
Confidence 8899999 99999999999984
No 63
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.8e-31 Score=210.99 Aligned_cols=156 Identities=13% Similarity=0.185 Sum_probs=117.9
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeec--CCcccccccccCCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTL--DDRRAPLASINASSPES 78 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~~~ 78 (193)
|++.+|++++|+||||||||||+++|+|+++|++|+|.++|.++.......+.++|+||++ .+..+..+++.+.....
T Consensus 20 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~ 99 (232)
T PRK10771 20 LTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPG 99 (232)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhcccccc
Confidence 5789999999999999999999999999999999999999988643322345799999986 23345566654332110
Q ss_pred CCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh-C
Q 029421 79 YRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE-S 136 (193)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~-~ 136 (193)
... .........+.++.+++... + ++.+|+++||||| ++||+.++..+.++++.+. +
T Consensus 100 ~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~ 178 (232)
T PRK10771 100 LKL-NAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQE 178 (232)
T ss_pred cCC-CHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 000 11111234456666666432 1 8899999999999 6999999999999998874 4
Q ss_pred -CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 137 -NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 137 -g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
|.|||++ |||.+++.++||++
T Consensus 179 ~~~tiii~------sH~~~~~~~~~d~i 200 (232)
T PRK10771 179 RQLTLLMV------SHSLEDAARIAPRS 200 (232)
T ss_pred cCCEEEEE------ECCHHHHHHhCCEE
Confidence 8999999 99999999999984
No 64
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=7e-32 Score=224.56 Aligned_cols=156 Identities=15% Similarity=0.253 Sum_probs=118.8
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh-----ccCCceeeEEEeecC--CcccccccccC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI-----RQGGQRVGFEVVTLD--DRRAPLASINA 73 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~-----~~~~~~ig~~~q~~~--~~~~~~~~~~~ 73 (193)
|+|++|++++|+||||||||||+|+|+|+++|++|+|.++|.++... ...++++||+||++. +..++.+++.+
T Consensus 26 l~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~ 105 (343)
T PRK11153 26 LHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVAL 105 (343)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHH
Confidence 57899999999999999999999999999999999999999986432 123567999999863 33456666543
Q ss_pred CCCCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421 74 SSPESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLR 132 (193)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~ 132 (193)
.... .............+.++.+++.... ++.+|+++||||| ++||+.++..+.++++
T Consensus 106 ~~~~-~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~ 184 (343)
T PRK11153 106 PLEL-AGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLK 184 (343)
T ss_pred HHHH-cCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 2110 1111111112334566666664321 8899999999999 6999999999999999
Q ss_pred HHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 133 ILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 133 ~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+. + |+|||++ |||++++.++||++
T Consensus 185 ~l~~~~g~tiilv------tH~~~~i~~~~d~v 211 (343)
T PRK11153 185 DINRELGLTIVLI------THEMDVVKRICDRV 211 (343)
T ss_pred HHHHhcCCEEEEE------eCCHHHHHHhCCEE
Confidence 875 4 8999999 99999999999984
No 65
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=1.2e-31 Score=212.89 Aligned_cols=157 Identities=17% Similarity=0.262 Sum_probs=116.9
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh-----ccCCceeeEEEeec--CCcccccccccC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI-----RQGGQRVGFEVVTL--DDRRAPLASINA 73 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~-----~~~~~~ig~~~q~~--~~~~~~~~~~~~ 73 (193)
|++.+|++++|+||||||||||+++|+|+++|++|+|.++|.++... ...++.++|+||++ .+..++.+++.+
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~ 101 (241)
T cd03256 22 LSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLS 101 (241)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccCcHHHHHHh
Confidence 57899999999999999999999999999999999999999876432 12346799999986 233455555443
Q ss_pred CCCCC-------CCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccc
Q 029421 74 SSPES-------YRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSS 125 (193)
Q Consensus 74 ~~~~~-------~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~ 125 (193)
..... .............+.++.+++... + ++.+|+++||||| ++||+.++.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~ 181 (241)
T cd03256 102 GRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSR 181 (241)
T ss_pred hhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHH
Confidence 22110 000001111223345566665432 1 8899999999999 699999999
Q ss_pred hHHHHHHHHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 126 FFPAVLRILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 126 ~~~~ll~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+.++++.+. + |.|||++ |||++++..+||++
T Consensus 182 ~l~~~l~~~~~~~~~tii~~------tH~~~~~~~~~d~v 215 (241)
T cd03256 182 QVMDLLKRINREEGITVIVS------LHQVDLAREYADRI 215 (241)
T ss_pred HHHHHHHHHHHhcCCEEEEE------eCCHHHHHHhCCEE
Confidence 9999998875 4 8999999 99999999999984
No 66
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.4e-31 Score=212.79 Aligned_cols=157 Identities=13% Similarity=0.189 Sum_probs=115.7
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEch--------hhccCCceeeEEEeecC--Cccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTG--------EIRQGGQRVGFEVVTLD--DRRAPLAS 70 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~--------~~~~~~~~ig~~~q~~~--~~~~~~~~ 70 (193)
|++++|++++|+||||||||||+++|+|+++|++|+|.++|.++. .....++.++|++|++. +..+..++
T Consensus 23 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~ 102 (242)
T PRK11124 23 LDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQN 102 (242)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCccccCCCcHHHH
Confidence 578999999999999999999999999999999999999998752 11123457999999762 23455555
Q ss_pred ccCCCCCCCCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHH
Q 029421 71 INASSPESYRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPA 129 (193)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ 129 (193)
+....................+.++.+++... + ++.+|+++||||| ++||+.++..+.+
T Consensus 103 i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~ 182 (242)
T PRK11124 103 LIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVS 182 (242)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHH
Confidence 43211000000110111223445555555432 1 7899999999999 6999999999999
Q ss_pred HHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 130 VLRILES-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 130 ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
+++.+++ |.|+|++ |||..++..+||++
T Consensus 183 ~l~~~~~~~~tii~~------sh~~~~~~~~~d~i 211 (242)
T PRK11124 183 IIRELAETGITQVIV------THEVEVARKTASRV 211 (242)
T ss_pred HHHHHHHcCCEEEEE------eCCHHHHHHhcCEE
Confidence 9998876 9999999 99999999999983
No 67
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=8e-32 Score=213.05 Aligned_cols=156 Identities=17% Similarity=0.273 Sum_probs=116.7
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh-----ccCCceeeEEEeecC--CcccccccccC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI-----RQGGQRVGFEVVTLD--DRRAPLASINA 73 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~-----~~~~~~ig~~~q~~~--~~~~~~~~~~~ 73 (193)
|+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ...++.++|+||++. +..+..+++.+
T Consensus 26 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~ 105 (233)
T cd03258 26 LSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVAL 105 (233)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHH
Confidence 57899999999999999999999999999999999999999886422 122467999999862 23455555433
Q ss_pred CCCCCCCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421 74 SSPESYRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLR 132 (193)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~ 132 (193)
.... .............+.++.+++.+. + ++.+|+++||||| ++||+.++..+.++++
T Consensus 106 ~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~ 184 (233)
T cd03258 106 PLEI-AGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLR 184 (233)
T ss_pred HHHH-cCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHH
Confidence 2110 011111111223455666665432 1 8899999999999 6999999999999998
Q ss_pred HHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 133 ILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 133 ~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.++ + |.|||++ ||+.+.+..+||++
T Consensus 185 ~~~~~~~~tvii~------sH~~~~~~~~~d~i 211 (233)
T cd03258 185 DINRELGLTIVLI------THEMEVVKRICDRV 211 (233)
T ss_pred HHHHHcCCEEEEE------eCCHHHHHHhCCEE
Confidence 875 4 8999999 99999999999984
No 68
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=8.4e-32 Score=217.91 Aligned_cols=156 Identities=16% Similarity=0.204 Sum_probs=117.8
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecC---CcccccccccCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLD---DRRAPLASINASS 75 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~---~~~~~~~~~~~~~ 75 (193)
|+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ...++.+||+||++. ...++.+++.+..
T Consensus 26 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~ 105 (274)
T PRK13647 26 LSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGP 105 (274)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhH
Confidence 57899999999999999999999999999999999999999886422 223457999999752 2335555554321
Q ss_pred CCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHH
Q 029421 76 PESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRIL 134 (193)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l 134 (193)
.. .............++++.+++.... ++.+|+++||||| ++||+.++..+.++++.+
T Consensus 106 ~~-~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 184 (274)
T PRK13647 106 VN-MGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRL 184 (274)
T ss_pred HH-cCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHH
Confidence 10 0111111112234556666664321 8899999999999 699999999999999988
Q ss_pred hC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 135 ES-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 135 ~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
++ |.|||++ |||++.+.++||++
T Consensus 185 ~~~g~tili~------tH~~~~~~~~~d~i 208 (274)
T PRK13647 185 HNQGKTVIVA------THDVDLAAEWADQV 208 (274)
T ss_pred HHCCCEEEEE------eCCHHHHHHhCCEE
Confidence 65 9999999 99999999999994
No 69
>PRK10908 cell division protein FtsE; Provisional
Probab=99.97 E-value=1e-31 Score=211.00 Aligned_cols=156 Identities=15% Similarity=0.155 Sum_probs=116.4
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh-----ccCCceeeEEEeecC--CcccccccccC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI-----RQGGQRVGFEVVTLD--DRRAPLASINA 73 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~-----~~~~~~ig~~~q~~~--~~~~~~~~~~~ 73 (193)
|+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ...++.++|++|++. ...+..+++.+
T Consensus 23 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~ 102 (222)
T PRK10908 23 FHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAI 102 (222)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCccccccccHHHHHHh
Confidence 57899999999999999999999999999999999999999876421 123467999999863 33455555443
Q ss_pred CCCCCCCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421 74 SSPESYRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLR 132 (193)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~ 132 (193)
.... .............++++.+++... + ++.+|+++||||| ++||+.++..+.++++
T Consensus 103 ~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~ 181 (222)
T PRK10908 103 PLII-AGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFE 181 (222)
T ss_pred HHHh-cCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHH
Confidence 2110 001111111123345566555332 1 7899999999999 6999999999999999
Q ss_pred HHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 133 ILES-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 133 ~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+++ |.|+|++ |||++++..+||++
T Consensus 182 ~~~~~~~tiii~------sH~~~~~~~~~d~i 207 (222)
T PRK10908 182 EFNRVGVTVLMA------THDIGLISRRSYRM 207 (222)
T ss_pred HHHHCCCEEEEE------eCCHHHHHHhCCEE
Confidence 8865 8999999 99999999999983
No 70
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=2e-31 Score=203.04 Aligned_cols=156 Identities=13% Similarity=0.148 Sum_probs=118.1
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCC-----CCeEEeceEchh----hccCCceeeEEEeecCCc-cccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASN-----PSLKVQGFYTGE----IRQGGQRVGFEVVTLDDR-RAPLAS 70 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~-----G~i~~~g~~~~~----~~~~~~~ig~~~q~~~~~-~~~~~~ 70 (193)
++|++++++|++||||||||||||+++.+..... |+|.++|+++.. ....|+++|++||.|+++ ++.++|
T Consensus 28 l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPFp~SIydN 107 (253)
T COG1117 28 LDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDN 107 (253)
T ss_pred eeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCCCCchHHHH
Confidence 5789999999999999999999999999977654 999999998743 234578999999988443 677888
Q ss_pred ccCCCCCCCCCCcccceeeehhhhhhhc---------------ccc---------cccCCCCCEEEEecC-CCccccccc
Q 029421 71 INASSPESYRWPTVGRYKVDVASFEAIA---------------LPE---------LQVGADTDLFVIDEV-GKMELFSSS 125 (193)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~---------------l~~---------~~l~~~p~llllDEp-~~LD~~~~~ 125 (193)
+.+......... ....+.+...++..+ ++. ..++.+|++|||||| ++|||.+..
T Consensus 108 VayG~r~~g~~~-~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~ 186 (253)
T COG1117 108 VAYGLRLHGIKD-KELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTL 186 (253)
T ss_pred HHHhHHhhccch-HHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHH
Confidence 766543211111 111111222222111 110 018899999999999 799999999
Q ss_pred hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+.+++..+++..||++| ||++..+.+++|+.
T Consensus 187 kIEeLi~eLk~~yTIviV------THnmqQAaRvSD~t 218 (253)
T COG1117 187 KIEELITELKKKYTIVIV------THNMQQAARVSDYT 218 (253)
T ss_pred HHHHHHHHHHhccEEEEE------eCCHHHHHHHhHhh
Confidence 999999999999999999 99999999999983
No 71
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.97 E-value=1.4e-31 Score=213.71 Aligned_cols=157 Identities=16% Similarity=0.190 Sum_probs=116.7
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh----------ccCCceeeEEEeec--CCccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI----------RQGGQRVGFEVVTL--DDRRAPL 68 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~----------~~~~~~ig~~~q~~--~~~~~~~ 68 (193)
|+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ...++.++|++|++ .+..+..
T Consensus 24 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 103 (250)
T PRK11264 24 LEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVL 103 (250)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCcccCCCCCHH
Confidence 67899999999999999999999999999999999999999876321 12345799999986 2234555
Q ss_pred ccccCCCCCCCCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchH
Q 029421 69 ASINASSPESYRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFF 127 (193)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~ 127 (193)
+++.+..................+.++.+++... + ++.+|+++||||| ++||+.++..+
T Consensus 104 e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l 183 (250)
T PRK11264 104 ENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEV 183 (250)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHH
Confidence 5543311000001111111223445566665432 1 7899999999999 69999999999
Q ss_pred HHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 128 PAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 128 ~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.++++.+.+ |.|||++ |||.+++.++||++
T Consensus 184 ~~~l~~~~~~~~tvi~~------tH~~~~~~~~~d~i 214 (250)
T PRK11264 184 LNTIRQLAQEKRTMVIV------THEMSFARDVADRA 214 (250)
T ss_pred HHHHHHHHhcCCEEEEE------eCCHHHHHHhcCEE
Confidence 999998876 9999999 99999999999984
No 72
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.9e-31 Score=211.99 Aligned_cols=157 Identities=14% Similarity=0.200 Sum_probs=117.0
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc---cCCceeeEEEeecC--CcccccccccCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR---QGGQRVGFEVVTLD--DRRAPLASINASS 75 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~---~~~~~ig~~~q~~~--~~~~~~~~~~~~~ 75 (193)
|++++|++++|+||||||||||+++|+|+++|++|+|.++|.++.... ..++.++|++|++. ...+..+++.+..
T Consensus 24 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~ 103 (241)
T PRK10895 24 LTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVL 103 (241)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhh
Confidence 678999999999999999999999999999999999999998864221 12457999999862 2345566654321
Q ss_pred CCCCCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHHH
Q 029421 76 PESYRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRIL 134 (193)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l 134 (193)
................+.++.+++... + ++.+|+++||||| ++||+.++..+.++++.+
T Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 183 (241)
T PRK10895 104 QIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHL 183 (241)
T ss_pred hcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 100000111111223445555555432 1 8899999999999 699999999999999888
Q ss_pred hC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 135 ES-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 135 ~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
++ |.|||++ ||+.+.+..+||++
T Consensus 184 ~~~g~tiii~------sH~~~~~~~~~d~v 207 (241)
T PRK10895 184 RDSGLGVLIT------DHNVRETLAVCERA 207 (241)
T ss_pred HhcCCEEEEE------EcCHHHHHHhcCEE
Confidence 76 9999999 99999999999984
No 73
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.97 E-value=1.7e-31 Score=209.64 Aligned_cols=154 Identities=16% Similarity=0.189 Sum_probs=113.4
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc---cCCceeeEEEeec--CCcccccccccCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR---QGGQRVGFEVVTL--DDRRAPLASINASS 75 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~---~~~~~ig~~~q~~--~~~~~~~~~~~~~~ 75 (193)
|++.+|++++|+||||||||||+++|+|+++|++|+|.++|.++.... ..++.++|+||++ .+..+..+++.+..
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~ 100 (222)
T cd03224 21 LTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGA 100 (222)
T ss_pred EEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHh
Confidence 578999999999999999999999999999999999999998764221 1245699999986 23345555543322
Q ss_pred CCCCCCCcccceeeehhhhhhh-cccc--------cc------------cCCCCCEEEEecC-CCccccccchHHHHHHH
Q 029421 76 PESYRWPTVGRYKVDVASFEAI-ALPE--------LQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRI 133 (193)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~-~l~~--------~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~ 133 (193)
... . .........+.++.+ ++.. ++ ++.+|+++||||| ++||+.++..+.++++.
T Consensus 101 ~~~-~--~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 177 (222)
T cd03224 101 YAR-R--RAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRE 177 (222)
T ss_pred hhc-C--chhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHH
Confidence 111 0 000111112233333 2221 11 8899999999999 69999999999999998
Q ss_pred HhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 134 LES-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 134 l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
+++ |.|||++ |||.+++.++||++
T Consensus 178 ~~~~~~tiii~------sH~~~~~~~~~d~i 202 (222)
T cd03224 178 LRDEGVTILLV------EQNARFALEIADRA 202 (222)
T ss_pred HHHCCCEEEEE------eCCHHHHHHhccEE
Confidence 875 8999999 99999999999983
No 74
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=9.9e-32 Score=220.35 Aligned_cols=156 Identities=15% Similarity=0.154 Sum_probs=117.9
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEch--------------------------hhccCCcee
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTG--------------------------EIRQGGQRV 54 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~--------------------------~~~~~~~~i 54 (193)
|+|.+|++++|+||||||||||+++|+|+++|++|+|.++|++.. .....++.+
T Consensus 28 l~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 107 (305)
T PRK13651 28 VEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRV 107 (305)
T ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccccccccccccccccccchHHHHHhce
Confidence 578999999999999999999999999999999999999987541 112235679
Q ss_pred eEEEeecC---CcccccccccCCCCCCCCCCcccceeeehhhhhhhccc-ccc--------------------cCCCCCE
Q 029421 55 GFEVVTLD---DRRAPLASINASSPESYRWPTVGRYKVDVASFEAIALP-ELQ--------------------VGADTDL 110 (193)
Q Consensus 55 g~~~q~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~--------------------l~~~p~l 110 (193)
||+||++. ...++.+++.+.... .............+.++.+++. .+. ++.+|++
T Consensus 108 g~v~Q~~~~~l~~~tv~e~i~~~~~~-~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~aL~~~P~l 186 (305)
T PRK13651 108 GVVFQFAEYQLFEQTIEKDIIFGPVS-MGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGILAMEPDF 186 (305)
T ss_pred EEEeeCcccccccccHHHHHHhhHHH-cCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHHhCCCE
Confidence 99999752 123455554332111 1111111123345667777774 221 8899999
Q ss_pred EEEecC-CCccccccchHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 111 FVIDEV-GKMELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 111 lllDEp-~~LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
|||||| ++||+.++..+.++++.+++ |.|||++ |||++.+.++||++
T Consensus 187 LlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiiv------tHd~~~~~~~adrv 235 (305)
T PRK13651 187 LVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILV------THDLDNVLEWTKRT 235 (305)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE------eeCHHHHHHhCCEE
Confidence 999999 69999999999999998876 9999999 99999999999994
No 75
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.97 E-value=1.4e-31 Score=216.06 Aligned_cols=157 Identities=17% Similarity=0.259 Sum_probs=116.3
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh-----ccCCceeeEEEeecC--CcccccccccC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI-----RQGGQRVGFEVVTLD--DRRAPLASINA 73 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~-----~~~~~~ig~~~q~~~--~~~~~~~~~~~ 73 (193)
|+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ...++.++|+||++. +..+..+++.+
T Consensus 28 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~ 107 (269)
T PRK11831 28 LTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAY 107 (269)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCCCCHHHHHHH
Confidence 57899999999999999999999999999999999999999876321 122456999999862 23355555433
Q ss_pred CCCCCCCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421 74 SSPESYRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLR 132 (193)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~ 132 (193)
..................+.++.+++... + ++.+|+++||||| ++||+.++..+.++++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~ 187 (269)
T PRK11831 108 PLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLIS 187 (269)
T ss_pred HHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHH
Confidence 21100001111111223345666666532 1 7899999999999 6999999999999999
Q ss_pred HHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 133 ILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 133 ~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+. + |.|||++ |||++++.++||++
T Consensus 188 ~~~~~~g~tiiiv------sH~~~~~~~~~d~v 214 (269)
T PRK11831 188 ELNSALGVTCVVV------SHDVPEVLSIADHA 214 (269)
T ss_pred HHHHhcCcEEEEE------ecCHHHHHHhhCEE
Confidence 875 4 8999999 99999999999984
No 76
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=2.6e-31 Score=213.01 Aligned_cols=152 Identities=19% Similarity=0.275 Sum_probs=115.0
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecC--CcccccccccCCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD--DRRAPLASINASSPES 78 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~~~ 78 (193)
|+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ...++|++|++. +..++.+++.+... .
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~---~~~~~~v~q~~~~~~~~tv~e~l~~~~~-~ 97 (255)
T PRK11248 22 LTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP---GAERGVVFQNEGLLPWRNVQDNVAFGLQ-L 97 (255)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC---CCcEEEEeCCCccCCCCcHHHHHHhHHH-H
Confidence 57899999999999999999999999999999999999999886431 245899999862 23455555433211 0
Q ss_pred CCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHHH-hC
Q 029421 79 YRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRIL-ES 136 (193)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l-~~ 136 (193)
.............+.++.+++... + ++.+|+++||||| ++||+.++..+.++++.+ ++
T Consensus 98 ~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~ 177 (255)
T PRK11248 98 AGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQE 177 (255)
T ss_pred cCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh
Confidence 011111111223456666665432 1 7899999999999 699999999999999887 44
Q ss_pred -CCcEEEEecCCCCCCChhHHHHHhcC
Q 029421 137 -NIPVLASIPAPKSGRDIPAVARLRNH 162 (193)
Q Consensus 137 -g~tvl~~~~~~~~tHd~~~~~~~~d~ 162 (193)
|.|||++ |||++++..+||+
T Consensus 178 ~g~tviiv------sH~~~~~~~~~d~ 198 (255)
T PRK11248 178 TGKQVLLI------THDIEEAVFMATE 198 (255)
T ss_pred cCCEEEEE------eCCHHHHHHhCCE
Confidence 8999999 9999999999998
No 77
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.97 E-value=3.5e-31 Score=208.61 Aligned_cols=157 Identities=13% Similarity=0.162 Sum_probs=114.4
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhc-----ccCCCCeEEeceEchhh----ccCCceeeEEEeecCC-ccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESL-----KASNPSLKVQGFYTGEI----RQGGQRVGFEVVTLDD-RRAPLAS 70 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~-----~~~~G~i~~~g~~~~~~----~~~~~~ig~~~q~~~~-~~~~~~~ 70 (193)
|+|++|++++|+||||||||||+++|+|++ +|++|+|.++|+++... ...++.++|++|++.. ..++.++
T Consensus 21 l~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~ 100 (227)
T cd03260 21 LDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDN 100 (227)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCchhccccHHHH
Confidence 578999999999999999999999999999 99999999999886432 2335679999998621 3455555
Q ss_pred ccCCCCCCCCCCcccceeeehhhhhhhccc----------ccc------------cCCCCCEEEEecC-CCccccccchH
Q 029421 71 INASSPESYRWPTVGRYKVDVASFEAIALP----------ELQ------------VGADTDLFVIDEV-GKMELFSSSFF 127 (193)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~------------l~~~p~llllDEp-~~LD~~~~~~~ 127 (193)
+.+..................+.++.+++. .++ ++.+|+++||||| ++||+.++..+
T Consensus 101 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l 180 (227)
T cd03260 101 VAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKI 180 (227)
T ss_pred HHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHH
Confidence 443221110000000111223344444432 122 7899999999999 69999999999
Q ss_pred HHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 128 PAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 128 ~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.++++.+++..|||++ |||++++.++||++
T Consensus 181 ~~~l~~~~~~~tii~~------sH~~~~~~~~~d~i 210 (227)
T cd03260 181 EELIAELKKEYTIVIV------THNMQQAARVADRT 210 (227)
T ss_pred HHHHHHHhhCcEEEEE------eccHHHHHHhCCEE
Confidence 9999987545899999 99999999999983
No 78
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.7e-31 Score=225.39 Aligned_cols=156 Identities=13% Similarity=0.238 Sum_probs=119.7
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc------cCCceeeEEEeec--CCccccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR------QGGQRVGFEVVTL--DDRRAPLASIN 72 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~------~~~~~ig~~~q~~--~~~~~~~~~~~ 72 (193)
|+|++|++++|+||||||||||+|+|+|+++|++|+|.++|.++.... ..++++||+||++ ++..+..+++.
T Consensus 49 l~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~ 128 (400)
T PRK10070 49 LAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTA 128 (400)
T ss_pred EEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHH
Confidence 579999999999999999999999999999999999999999864321 1235799999986 33456666654
Q ss_pred CCCCCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421 73 ASSPESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVL 131 (193)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll 131 (193)
+.... ..+..........++++.+++.... ++.+|++|||||| ++||+.++..+.+++
T Consensus 129 ~~~~~-~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L 207 (400)
T PRK10070 129 FGMEL-AGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDEL 207 (400)
T ss_pred HHHHh-cCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHH
Confidence 43211 1111111122344567777765331 8899999999999 699999999999999
Q ss_pred HHHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 132 RILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 132 ~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
..+. + |+|||++ |||++++.++||++
T Consensus 208 ~~l~~~~g~TIIiv------THd~~~~~~~~Dri 235 (400)
T PRK10070 208 VKLQAKHQRTIVFI------SHDLDEAMRIGDRI 235 (400)
T ss_pred HHHHHHCCCeEEEE------ECCHHHHHHhCCEE
Confidence 8875 4 8999999 99999999999984
No 79
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.2e-31 Score=218.37 Aligned_cols=156 Identities=13% Similarity=0.239 Sum_probs=117.4
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh------hccCCceeeEEEeecC---Ccccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE------IRQGGQRVGFEVVTLD---DRRAPLASI 71 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~------~~~~~~~ig~~~q~~~---~~~~~~~~~ 71 (193)
|+|.+|++++|+||||||||||+++|+|+++|++|+|.++|+++.. ....+..+||+||++. ...++.+++
T Consensus 28 l~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l 107 (287)
T PRK13641 28 FELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDV 107 (287)
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhccchHHHHH
Confidence 5789999999999999999999999999999999999999988632 1223457999999752 123455554
Q ss_pred cCCCCCCCCCCcccceeeehhhhhhhccc-cc--------c------------cCCCCCEEEEecC-CCccccccchHHH
Q 029421 72 NASSPESYRWPTVGRYKVDVASFEAIALP-EL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPA 129 (193)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ 129 (193)
.+.... .............++++.+++. .+ + ++.+|++|||||| ++||+.++..+.+
T Consensus 108 ~~~~~~-~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~ 186 (287)
T PRK13641 108 EFGPKN-FGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQ 186 (287)
T ss_pred HHHHHH-cCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHH
Confidence 321110 0011111112344566666664 22 1 8899999999999 6999999999999
Q ss_pred HHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 130 VLRILES-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 130 ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
+++.+++ |.|||++ |||++++.++||++
T Consensus 187 ~l~~l~~~g~tvliv------sH~~~~~~~~~d~v 215 (287)
T PRK13641 187 LFKDYQKAGHTVILV------THNMDDVAEYADDV 215 (287)
T ss_pred HHHHHHhCCCEEEEE------eCCHHHHHHhCCEE
Confidence 9998875 9999999 99999999999984
No 80
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.97 E-value=1.9e-31 Score=213.93 Aligned_cols=157 Identities=14% Similarity=0.193 Sum_probs=117.6
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh---------------hccCCceeeEEEeecC--C
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE---------------IRQGGQRVGFEVVTLD--D 63 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~---------------~~~~~~~ig~~~q~~~--~ 63 (193)
|+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.. ....++.++|++|++. +
T Consensus 26 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~ 105 (257)
T PRK10619 26 LQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWS 105 (257)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccchHHHHHhhceEEEecCcccCC
Confidence 5789999999999999999999999999999999999999987531 1123467999999863 2
Q ss_pred cccccccccCCCCCCCCCCcccceeeehhhhhhhccccc---------c------------cCCCCCEEEEecC-CCccc
Q 029421 64 RRAPLASINASSPESYRWPTVGRYKVDVASFEAIALPEL---------Q------------VGADTDLFVIDEV-GKMEL 121 (193)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---------~------------l~~~p~llllDEp-~~LD~ 121 (193)
..+..+++.+..................+.++.+++... + ++.+|+++||||| ++||+
T Consensus 106 ~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~ 185 (257)
T PRK10619 106 HMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDP 185 (257)
T ss_pred CCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 345566643311000011111111223455666665432 1 8899999999999 69999
Q ss_pred cccchHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 122 FSSSFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 122 ~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.++..+.++++.+++ |.|||++ |||.+++..+||++
T Consensus 186 ~~~~~l~~~l~~l~~~g~tiiiv------sH~~~~~~~~~d~i 222 (257)
T PRK10619 186 ELVGEVLRIMQQLAEEGKTMVVV------THEMGFARHVSSHV 222 (257)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEE------eCCHHHHHHhcCEE
Confidence 999999999998876 9999999 99999999999984
No 81
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.97 E-value=7.5e-31 Score=195.52 Aligned_cols=156 Identities=13% Similarity=0.165 Sum_probs=126.6
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeec--CCcccccccccCCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTL--DDRRAPLASINASSPES 78 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~~~ 78 (193)
++|+.||+++|+||||||||||+++|+|...|.+|+|+++|.+........+-++++||+. +...++.+|+.+.....
T Consensus 20 l~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~ 99 (231)
T COG3840 20 LTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPG 99 (231)
T ss_pred EeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCcc
Confidence 4688999999999999999999999999999999999999999765555566788999976 44567777776655433
Q ss_pred CCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHHhC-
Q 029421 79 YRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILES- 136 (193)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~- 136 (193)
..... ...+.....+.++|+..+. ++.+-++++|||| ++|||..|.++..++..++.
T Consensus 100 LkL~a-~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E 178 (231)
T COG3840 100 LKLNA-EQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDE 178 (231)
T ss_pred cccCH-HHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHh
Confidence 33222 2223445666777776442 7889999999999 89999999999999999864
Q ss_pred -CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 137 -NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 137 -g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
+.|++|| ||..+++.++++++
T Consensus 179 ~~~TllmV------TH~~~Da~~ia~~~ 200 (231)
T COG3840 179 RKMTLLMV------THHPEDAARIADRV 200 (231)
T ss_pred hCCEEEEE------eCCHHHHHHhhhce
Confidence 9999999 99999999999983
No 82
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=3e-31 Score=216.11 Aligned_cols=156 Identities=15% Similarity=0.237 Sum_probs=116.9
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh------hccCCceeeEEEeecC---Ccccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE------IRQGGQRVGFEVVTLD---DRRAPLASI 71 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~------~~~~~~~ig~~~q~~~---~~~~~~~~~ 71 (193)
|+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++.. ....++.+||+||++. ...++.+++
T Consensus 27 l~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~~~l 106 (288)
T PRK13643 27 LEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDV 106 (288)
T ss_pred EEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhcccchHHHHH
Confidence 5789999999999999999999999999999999999999998631 1233567999999752 113445554
Q ss_pred cCCCCCCCCCCcccceeeehhhhhhhccc-cc--------c------------cCCCCCEEEEecC-CCccccccchHHH
Q 029421 72 NASSPESYRWPTVGRYKVDVASFEAIALP-EL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPA 129 (193)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ 129 (193)
.+.... .............+.++.+++. .+ + ++.+|+++||||| ++||+.++..+.+
T Consensus 107 ~~~~~~-~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~ 185 (288)
T PRK13643 107 AFGPQN-FGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQ 185 (288)
T ss_pred HhHHHH-cCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHH
Confidence 332111 1111111112234556666663 22 1 8899999999999 6999999999999
Q ss_pred HHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 130 VLRILES-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 130 ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
+++.+++ |.|||++ |||++++..+||++
T Consensus 186 ~l~~l~~~g~til~v------tHd~~~~~~~~dri 214 (288)
T PRK13643 186 LFESIHQSGQTVVLV------THLMDDVADYADYV 214 (288)
T ss_pred HHHHHHHCCCEEEEE------ecCHHHHHHhCCEE
Confidence 9998876 9999999 99999999999984
No 83
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=2.3e-31 Score=210.58 Aligned_cols=154 Identities=16% Similarity=0.189 Sum_probs=114.0
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc-----cC-CceeeEEEeec--CCccccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR-----QG-GQRVGFEVVTL--DDRRAPLASIN 72 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~-----~~-~~~ig~~~q~~--~~~~~~~~~~~ 72 (193)
|+|++|++++|+||||||||||+++|+|+++|++|+|.++|+++.... .. ++.++|++|++ .+..+..+++.
T Consensus 30 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~ 109 (233)
T PRK11629 30 FSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVA 109 (233)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHH
Confidence 678999999999999999999999999999999999999998864321 11 25699999986 22345555543
Q ss_pred CCCCCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421 73 ASSPESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVL 131 (193)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll 131 (193)
+... ..............+.++.+++.+.. ++.+|+++||||| ++||+.++..+.+++
T Consensus 110 ~~~~-~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l 188 (233)
T PRK11629 110 MPLL-IGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLL 188 (233)
T ss_pred HHHH-hcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH
Confidence 3211 00111111112344566666664321 7899999999999 699999999999999
Q ss_pred HHHh-C-CCcEEEEecCCCCCCChhHHHHHhcC
Q 029421 132 RILE-S-NIPVLASIPAPKSGRDIPAVARLRNH 162 (193)
Q Consensus 132 ~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~ 162 (193)
+.++ + |.|||++ |||++++..+ ++
T Consensus 189 ~~~~~~~g~tvii~------sH~~~~~~~~-~~ 214 (233)
T PRK11629 189 GELNRLQGTAFLVV------THDLQLAKRM-SR 214 (233)
T ss_pred HHHHHhCCCEEEEE------eCCHHHHHhh-CE
Confidence 9875 3 8999999 9999988765 45
No 84
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=2.7e-31 Score=214.40 Aligned_cols=156 Identities=15% Similarity=0.273 Sum_probs=116.4
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc------cCCceeeEEEeecC--Cccccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR------QGGQRVGFEVVTLD--DRRAPLASIN 72 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~------~~~~~ig~~~q~~~--~~~~~~~~~~ 72 (193)
|+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.... ..++.++|++|++. +..++.+++.
T Consensus 45 ~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~ 124 (269)
T cd03294 45 LDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVA 124 (269)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCCcHHHHHH
Confidence 578999999999999999999999999999999999999998764221 11357999999862 2345555543
Q ss_pred CCCCCCCCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421 73 ASSPESYRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVL 131 (193)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll 131 (193)
+.... .............+.++.+++... + ++.+|+++||||| ++||+.++..+.+++
T Consensus 125 ~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l 203 (269)
T cd03294 125 FGLEV-QGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDEL 203 (269)
T ss_pred HHHHh-cCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHH
Confidence 32110 001111111223455666666432 1 8899999999999 699999999999999
Q ss_pred HHHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 132 RILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 132 ~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
..+. + |.|||++ |||++++.++||++
T Consensus 204 ~~~~~~~g~tiii~------tH~~~~~~~~~d~v 231 (269)
T cd03294 204 LRLQAELQKTIVFI------THDLDEALRLGDRI 231 (269)
T ss_pred HHHHHhcCCEEEEE------eCCHHHHHHhcCEE
Confidence 8875 4 8999999 99999999999984
No 85
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.97 E-value=1.6e-31 Score=221.25 Aligned_cols=157 Identities=15% Similarity=0.150 Sum_probs=118.1
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh-----ccCCceeeEEEeec----CCcccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI-----RQGGQRVGFEVVTL----DDRRAPLASI 71 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~-----~~~~~~ig~~~q~~----~~~~~~~~~~ 71 (193)
|+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++... +..+++++|+||++ ++..+..+++
T Consensus 42 l~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i 121 (331)
T PRK15079 42 LRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEII 121 (331)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHH
Confidence 57899999999999999999999999999999999999999986432 22346799999986 2234444544
Q ss_pred cCCCCCCC-CCCcccceeeehhhhhhhcccc-c--------c------------cCCCCCEEEEecC-CCccccccchHH
Q 029421 72 NASSPESY-RWPTVGRYKVDVASFEAIALPE-L--------Q------------VGADTDLFVIDEV-GKMELFSSSFFP 128 (193)
Q Consensus 72 ~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~-~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~ 128 (193)
.+...... ............+.++.+++.. . + ++.+|++||+||| ++||+.++..+.
T Consensus 122 ~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~ 201 (331)
T PRK15079 122 AEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVV 201 (331)
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH
Confidence 32111000 0111111223345666666631 1 1 8899999999999 699999999999
Q ss_pred HHHHHHhC--CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 129 AVLRILES--NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 129 ~ll~~l~~--g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
++++.+.+ |.|+|++ |||+..+.++||++
T Consensus 202 ~lL~~l~~~~~~til~i------THdl~~~~~~~dri 232 (331)
T PRK15079 202 NLLQQLQREMGLSLIFI------AHDLAVVKHISDRV 232 (331)
T ss_pred HHHHHHHHHcCCEEEEE------eCCHHHHHHhCCEE
Confidence 99998754 8999999 99999999999995
No 86
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=7.1e-31 Score=219.24 Aligned_cols=150 Identities=16% Similarity=0.201 Sum_probs=117.9
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh------hccCCceeeEEEeec--CCccccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE------IRQGGQRVGFEVVTL--DDRRAPLASIN 72 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~------~~~~~~~ig~~~q~~--~~~~~~~~~~~ 72 (193)
|+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.. ....++.++|+||++ ++..++.+++.
T Consensus 19 l~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~ 98 (352)
T PRK11144 19 LTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLR 98 (352)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHHHHH
Confidence 5789999999999999999999999999999999999999987632 123356799999986 33456666654
Q ss_pred CCCCCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421 73 ASSPESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVL 131 (193)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll 131 (193)
+.... .......+.++.+++..+. ++.+|+++||||| ++||+.++..+.+++
T Consensus 99 ~~~~~-------~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L 171 (352)
T PRK11144 99 YGMAK-------SMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYL 171 (352)
T ss_pred hhhhh-------hhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 42210 0112234556666664321 8899999999999 699999999999999
Q ss_pred HHHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 132 RILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 132 ~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
+.+. + |.|+|++ |||.+++..+||++
T Consensus 172 ~~l~~~~g~tii~v------THd~~~~~~~~d~i 199 (352)
T PRK11144 172 ERLAREINIPILYV------SHSLDEILRLADRV 199 (352)
T ss_pred HHHHHhcCCeEEEE------ecCHHHHHHhCCEE
Confidence 8875 4 8999999 99999999999984
No 87
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=5.9e-31 Score=202.79 Aligned_cols=155 Identities=12% Similarity=0.135 Sum_probs=119.0
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh---ccCCceeeEEEeec--CCcccccccccCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI---RQGGQRVGFEVVTL--DDRRAPLASINASS 75 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~---~~~~~~ig~~~q~~--~~~~~~~~~~~~~~ 75 (193)
|++++||+++|+||||+|||||||+|+|+.++.+|+|.++|+++... ...+..++|+||.- ++.+++.+|+....
T Consensus 24 l~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~ 103 (237)
T COG0410 24 LEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGA 103 (237)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhh
Confidence 67899999999999999999999999999999999999999998543 34467899999965 67788888876543
Q ss_pred CCCCCCCcccceeeehhhhhhhc-c--------cccc------------cCCCCCEEEEecCC-CccccccchHHHHHHH
Q 029421 76 PESYRWPTVGRYKVDVASFEAIA-L--------PELQ------------VGADTDLFVIDEVG-KMELFSSSFFPAVLRI 133 (193)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~-l--------~~~~------------l~~~p~llllDEp~-~LD~~~~~~~~~ll~~ 133 (193)
..... .........+.++.+. + ..++ |+.+|++|+||||+ ||-|.-.+++.+.++.
T Consensus 104 ~~~~~--~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~ 181 (237)
T COG0410 104 YARRD--KEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKE 181 (237)
T ss_pred hcccc--cccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHH
Confidence 21111 0000111122222221 0 0111 88999999999995 9999999999999999
Q ss_pred HhC--CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 134 LES--NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 134 l~~--g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
+++ |.||++| .++...+.+++|+.
T Consensus 182 l~~~~g~tIlLV------EQn~~~Al~iaDr~ 207 (237)
T COG0410 182 LRKEGGMTILLV------EQNARFALEIADRG 207 (237)
T ss_pred HHHcCCcEEEEE------eccHHHHHHhhCEE
Confidence 874 8899999 99999999999993
No 88
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=2.4e-31 Score=216.83 Aligned_cols=156 Identities=14% Similarity=0.207 Sum_probs=117.8
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh------hccCCceeeEEEeecC---Ccccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE------IRQGGQRVGFEVVTLD---DRRAPLASI 71 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~------~~~~~~~ig~~~q~~~---~~~~~~~~~ 71 (193)
|+|++|++++|+||||||||||+++|+|+++|++|+|.++|+++.. ....++.+||+||++. ...++.+++
T Consensus 28 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni 107 (290)
T PRK13634 28 VSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDI 107 (290)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhhhhhHHHHH
Confidence 5789999999999999999999999999999999999999998632 1233567999999752 123555554
Q ss_pred cCCCCCCCCCCcccceeeehhhhhhhccc-ccc--------------------cCCCCCEEEEecC-CCccccccchHHH
Q 029421 72 NASSPESYRWPTVGRYKVDVASFEAIALP-ELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPA 129 (193)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ 129 (193)
.+.... .............++++.+++. .+. ++.+|+++||||| ++||+.++..+.+
T Consensus 108 ~~~~~~-~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~ 186 (290)
T PRK13634 108 CFGPMN-FGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMME 186 (290)
T ss_pred HHHHHH-cCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHH
Confidence 332111 0111111112344566666764 221 8899999999999 6999999999999
Q ss_pred HHHHHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 130 VLRILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 130 ll~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
+++.+. + |.|||++ |||++++.++||++
T Consensus 187 ~L~~l~~~~g~tviii------tHd~~~~~~~~drv 216 (290)
T PRK13634 187 MFYKLHKEKGLTTVLV------THSMEDAARYADQI 216 (290)
T ss_pred HHHHHHHhcCCEEEEE------eCCHHHHHHhCCEE
Confidence 998885 4 8999999 99999999999984
No 89
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.97 E-value=3.1e-31 Score=205.90 Aligned_cols=155 Identities=14% Similarity=0.190 Sum_probs=113.6
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh------ccCCceeeEEEeecC--Cccccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI------RQGGQRVGFEVVTLD--DRRAPLASIN 72 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~------~~~~~~ig~~~q~~~--~~~~~~~~~~ 72 (193)
|++++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ...++.++|++|++. +..+..+++.
T Consensus 19 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~~~ 98 (206)
T TIGR03608 19 LTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLD 98 (206)
T ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhccCCcHHHHHH
Confidence 57899999999999999999999999999999999999999884211 123467999999862 2345555543
Q ss_pred CCCCCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421 73 ASSPESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVL 131 (193)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll 131 (193)
+.... .............+.++.+++.... ++.+|+++||||| ++||+.++..+.+++
T Consensus 99 ~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l 177 (206)
T TIGR03608 99 LGLKY-KKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLL 177 (206)
T ss_pred HHHHh-cCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHH
Confidence 32110 0011111112234556666654321 8899999999999 699999999999999
Q ss_pred HHHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 132 RILES-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 132 ~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
+.+.+ |.|||++ ||+.+.+ .+||++
T Consensus 178 ~~~~~~~~tii~~------sh~~~~~-~~~d~i 203 (206)
T TIGR03608 178 LELNDEGKTIIIV------THDPEVA-KQADRV 203 (206)
T ss_pred HHHHhcCCEEEEE------eCCHHHH-hhcCEE
Confidence 98865 8999999 9998765 578763
No 90
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=2.5e-31 Score=216.37 Aligned_cols=156 Identities=19% Similarity=0.265 Sum_probs=117.7
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh------hccCCceeeEEEeecC---Ccccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE------IRQGGQRVGFEVVTLD---DRRAPLASI 71 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~------~~~~~~~ig~~~q~~~---~~~~~~~~~ 71 (193)
|+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.. ....++.+||+||++. ...++.+++
T Consensus 28 l~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~e~i 107 (286)
T PRK13646 28 TEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREI 107 (286)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccchhhHHHHH
Confidence 5789999999999999999999999999999999999999988632 1234567999999752 112455554
Q ss_pred cCCCCCCCCCCcccceeeehhhhhhhccc-ccc--------------------cCCCCCEEEEecC-CCccccccchHHH
Q 029421 72 NASSPESYRWPTVGRYKVDVASFEAIALP-ELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPA 129 (193)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ 129 (193)
.+.... .............++++.+++. ... ++.+|+++||||| ++||+.++..+.+
T Consensus 108 ~~~~~~-~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~ 186 (286)
T PRK13646 108 IFGPKN-FKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMR 186 (286)
T ss_pred HhhHHH-cCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHH
Confidence 432111 0111111112344566666664 221 8899999999999 6999999999999
Q ss_pred HHHHHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 130 VLRILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 130 ll~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
+++.+. + |.|||++ |||++++..+||++
T Consensus 187 ~l~~l~~~~g~tvl~v------tH~~~~~~~~~dri 216 (286)
T PRK13646 187 LLKSLQTDENKTIILV------SHDMNEVARYADEV 216 (286)
T ss_pred HHHHHHHhCCCEEEEE------ecCHHHHHHhCCEE
Confidence 999875 4 8999999 99999999999984
No 91
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.97 E-value=4.4e-31 Score=207.23 Aligned_cols=154 Identities=14% Similarity=0.180 Sum_probs=112.9
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc-----cC-CceeeEEEeec--CCccccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR-----QG-GQRVGFEVVTL--DDRRAPLASIN 72 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~-----~~-~~~ig~~~q~~--~~~~~~~~~~~ 72 (193)
|+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.... .. ++.++|++|++ .+..+..+++.
T Consensus 26 l~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~ 105 (221)
T TIGR02211 26 LSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVA 105 (221)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHH
Confidence 578999999999999999999999999999999999999998864321 11 25699999986 23345555543
Q ss_pred CCCCCCCCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421 73 ASSPESYRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVL 131 (193)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll 131 (193)
+.... .............+.++.+++... + ++.+|+++||||| ++||+.++..+.+++
T Consensus 106 ~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l 184 (221)
T TIGR02211 106 MPLLI-GKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLM 184 (221)
T ss_pred HHHHh-cCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHH
Confidence 32110 001111111223455666666432 1 8899999999999 699999999999999
Q ss_pred HHHh-C-CCcEEEEecCCCCCCChhHHHHHhcC
Q 029421 132 RILE-S-NIPVLASIPAPKSGRDIPAVARLRNH 162 (193)
Q Consensus 132 ~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~ 162 (193)
+.+. + |.|||++ |||++.+.. +|+
T Consensus 185 ~~~~~~~~~tii~~------tH~~~~~~~-~d~ 210 (221)
T TIGR02211 185 LELNRELNTSFLVV------THDLELAKK-LDR 210 (221)
T ss_pred HHHHHhcCCEEEEE------eCCHHHHhh-cCE
Confidence 8875 4 8999999 999988754 676
No 92
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.97 E-value=6.2e-31 Score=209.06 Aligned_cols=157 Identities=16% Similarity=0.199 Sum_probs=117.7
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc---cCCceeeEEEeec--CCcccccccccCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR---QGGQRVGFEVVTL--DDRRAPLASINASS 75 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~---~~~~~ig~~~q~~--~~~~~~~~~~~~~~ 75 (193)
|+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++.... ..++.++|++|++ .+..++.+++.+..
T Consensus 23 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~ 102 (242)
T TIGR03411 23 LYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFENLELAL 102 (242)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhh
Confidence 678999999999999999999999999999999999999998763221 1234699999986 33345566544321
Q ss_pred CCCCC-------CCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchH
Q 029421 76 PESYR-------WPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFF 127 (193)
Q Consensus 76 ~~~~~-------~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~ 127 (193)
..... ...........+.++.+++.... ++.+|+++||||| ++||+.++..+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l 182 (242)
T TIGR03411 103 PRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKT 182 (242)
T ss_pred hcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHH
Confidence 10000 00001112234556666664321 8899999999999 69999999999
Q ss_pred HHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 128 PAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 128 ~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.++++.+.++.|||++ ||+.+++.++||++
T Consensus 183 ~~~l~~~~~~~tii~~------sH~~~~~~~~~d~i 212 (242)
T TIGR03411 183 AELLKSLAGKHSVVVV------EHDMEFVRSIADKV 212 (242)
T ss_pred HHHHHHHhcCCEEEEE------ECCHHHHHHhCCEE
Confidence 9999988768899999 99999999999984
No 93
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.97 E-value=4.8e-31 Score=207.77 Aligned_cols=157 Identities=18% Similarity=0.229 Sum_probs=114.1
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh-----ccCCceeeEEEeecC----Ccccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI-----RQGGQRVGFEVVTLD----DRRAPLASI 71 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~-----~~~~~~ig~~~q~~~----~~~~~~~~~ 71 (193)
|++++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ...++.++|++|++. +..++.+++
T Consensus 26 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl 105 (228)
T cd03257 26 FSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQI 105 (228)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCCcCCHHHHH
Confidence 57899999999999999999999999999999999999999886432 233567999999862 223444554
Q ss_pred cCCCCCCCCCCcccceee-ehhhhhhhccc-c--------cc------------cCCCCCEEEEecC-CCccccccchHH
Q 029421 72 NASSPESYRWPTVGRYKV-DVASFEAIALP-E--------LQ------------VGADTDLFVIDEV-GKMELFSSSFFP 128 (193)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~-~~~~l~~~~l~-~--------~~------------l~~~p~llllDEp-~~LD~~~~~~~~ 128 (193)
.+................ ..+.++.+++. . ++ ++.+|+++||||| ++||+.++..+.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~ 185 (228)
T cd03257 106 AEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQIL 185 (228)
T ss_pred HHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHH
Confidence 321110000000000011 12444555552 1 11 8899999999999 699999999999
Q ss_pred HHHHHHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 129 AVLRILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 129 ~ll~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
++++.+. + |.|||++ |||++.+..+||++
T Consensus 186 ~~l~~~~~~~~~tii~~------sH~~~~~~~~~d~i 216 (228)
T cd03257 186 DLLKKLQEELGLTLLFI------THDLGVVAKIADRV 216 (228)
T ss_pred HHHHHHHHHcCCEEEEE------eCCHHHHHHhcCeE
Confidence 9998875 4 8999999 99999999999984
No 94
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.97 E-value=4.6e-31 Score=212.62 Aligned_cols=157 Identities=16% Similarity=0.170 Sum_probs=115.6
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc-----cCCceeeEEEeecC----Ccccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR-----QGGQRVGFEVVTLD----DRRAPLASI 71 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~-----~~~~~ig~~~q~~~----~~~~~~~~~ 71 (193)
|+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.... ..++.++|++|++. +..++.+++
T Consensus 32 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l 111 (265)
T TIGR02769 32 LSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQII 111 (265)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHH
Confidence 678999999999999999999999999999999999999998864221 13467999999751 223444443
Q ss_pred cCCCCCCCCCCcccceeeehhhhhhhccc-cc--------c------------cCCCCCEEEEecC-CCccccccchHHH
Q 029421 72 NASSPESYRWPTVGRYKVDVASFEAIALP-EL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPA 129 (193)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ 129 (193)
.+..................+.++.+++. .+ + ++.+|++|||||| ++||+.++..+.+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~ 191 (265)
T TIGR02769 112 GEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILE 191 (265)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 22110000011111112334566666663 22 1 8899999999999 6999999999999
Q ss_pred HHHHHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 130 VLRILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 130 ll~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
+++.+. + |.|||++ |||++.+..+||++
T Consensus 192 ~l~~~~~~~g~tiiiv------sH~~~~~~~~~d~i 221 (265)
T TIGR02769 192 LLRKLQQAFGTAYLFI------THDLRLVQSFCQRV 221 (265)
T ss_pred HHHHHHHhcCcEEEEE------eCCHHHHHHHhcEE
Confidence 998875 4 8999999 99999999999984
No 95
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.97 E-value=1.9e-31 Score=204.82 Aligned_cols=148 Identities=20% Similarity=0.261 Sum_probs=107.2
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh----hccCCceeeEEEeecC---CcccccccccC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE----IRQGGQRVGFEVVTLD---DRRAPLASINA 73 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~----~~~~~~~ig~~~q~~~---~~~~~~~~~~~ 73 (193)
|+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++.. ....++.++|++|++. ...+..+++.+
T Consensus 13 l~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~~nl~~ 92 (190)
T TIGR01166 13 FAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAADVDQDVAF 92 (190)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccccHHHHHHH
Confidence 5799999999999999999999999999999999999999988631 1123457999999852 12344555433
Q ss_pred CCCCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421 74 SSPESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLR 132 (193)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~ 132 (193)
.... .............+.++.+++.... ++.+|+++||||| ++||+.++..+.++++
T Consensus 93 ~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~ 171 (190)
T TIGR01166 93 GPLN-LGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILR 171 (190)
T ss_pred HHHH-cCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence 2110 0011111111233455555554321 8899999999999 6999999999999999
Q ss_pred HHhC-CCcEEEEecCCCCCCChhH
Q 029421 133 ILES-NIPVLASIPAPKSGRDIPA 155 (193)
Q Consensus 133 ~l~~-g~tvl~~~~~~~~tHd~~~ 155 (193)
.+++ |.|||++ |||+++
T Consensus 172 ~~~~~~~tili~------sH~~~~ 189 (190)
T TIGR01166 172 RLRAEGMTVVIS------THDVDL 189 (190)
T ss_pred HHHHcCCEEEEE------eecccc
Confidence 8866 8999999 998764
No 96
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.97 E-value=5.3e-31 Score=221.08 Aligned_cols=156 Identities=17% Similarity=0.217 Sum_probs=119.7
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceE----chh-----hcc-CCceeeEEEeec--CCccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFY----TGE-----IRQ-GGQRVGFEVVTL--DDRRAPL 68 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~----~~~-----~~~-~~~~ig~~~q~~--~~~~~~~ 68 (193)
|+|++||+++|+||||||||||+|+|+|+++|++|+|.++|++ +.. .+. .+++++|+||++ ++..++.
T Consensus 45 f~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~ 124 (382)
T TIGR03415 45 LDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVE 124 (382)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHH
Confidence 6799999999999999999999999999999999999999963 211 111 235799999987 3445677
Q ss_pred ccccCCCCCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchH
Q 029421 69 ASINASSPESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFF 127 (193)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~ 127 (193)
+|+.+.... .............+.++.+++..+. ++.+|+++||||| ++||+.++..+
T Consensus 125 eNi~~~~~~-~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l 203 (382)
T TIGR03415 125 ENVAFGLEM-QGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQL 203 (382)
T ss_pred HHHHHHHHh-cCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHH
Confidence 776543211 1111111223345677777775432 8899999999999 79999999999
Q ss_pred HHHHHHHhC--CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 128 PAVLRILES--NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 128 ~~ll~~l~~--g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+++..+.+ |+|||++ |||++++.++||++
T Consensus 204 ~~~L~~l~~~~~~TII~i------THdl~e~~~l~DrI 235 (382)
T TIGR03415 204 QDELLELQAKLNKTIIFV------SHDLDEALKIGNRI 235 (382)
T ss_pred HHHHHHHHHhcCCEEEEE------eCCHHHHHHhCCEE
Confidence 998888753 8999999 99999999999994
No 97
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.97 E-value=4.7e-31 Score=210.45 Aligned_cols=157 Identities=13% Similarity=0.188 Sum_probs=115.9
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccC-----CCCeEEeceEchh----hccCCceeeEEEeecCC-ccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKAS-----NPSLKVQGFYTGE----IRQGGQRVGFEVVTLDD-RRAPLAS 70 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~-----~G~i~~~g~~~~~----~~~~~~~ig~~~q~~~~-~~~~~~~ 70 (193)
|+|++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++.. ....++.++|+||++.. ..+..++
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~e~ 101 (247)
T TIGR00972 22 LDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDN 101 (247)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccCCCCHHHH
Confidence 678999999999999999999999999999998 9999999988642 12235679999998621 1455555
Q ss_pred ccCCCCCCCCCCcccceeeehhhhhhhccc----c--------cc------------cCCCCCEEEEecC-CCccccccc
Q 029421 71 INASSPESYRWPTVGRYKVDVASFEAIALP----E--------LQ------------VGADTDLFVIDEV-GKMELFSSS 125 (193)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~--------~~------------l~~~p~llllDEp-~~LD~~~~~ 125 (193)
+.+..................+.++.+++. . ++ ++.+|+++||||| ++||+.++.
T Consensus 102 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~ 181 (247)
T TIGR00972 102 IAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATG 181 (247)
T ss_pred HHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 433211100001111112233455555553 1 11 8899999999999 699999999
Q ss_pred hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+.++++.++++.|||++ ||+++.+..+||++
T Consensus 182 ~l~~~l~~~~~~~tiiiv------sH~~~~~~~~~d~i 213 (247)
T TIGR00972 182 KIEELIQELKKKYTIVIV------THNMQQAARISDRT 213 (247)
T ss_pred HHHHHHHHHHhcCeEEEE------ecCHHHHHHhCCEE
Confidence 999999988667899999 99999999999984
No 98
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.97 E-value=1.5e-30 Score=206.27 Aligned_cols=155 Identities=16% Similarity=0.150 Sum_probs=114.0
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc-cCCceeeEEEeecC--CcccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR-QGGQRVGFEVVTLD--DRRAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~-~~~~~ig~~~q~~~--~~~~~~~~~~~~~~~ 77 (193)
|+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++.... ...+.++|++|++. ...+..+++.+....
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~ 101 (236)
T TIGR03864 22 FTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAAL 101 (236)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHh
Confidence 578999999999999999999999999999999999999998764221 22347999999762 334555554332110
Q ss_pred CCCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh-
Q 029421 78 SYRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE- 135 (193)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~- 135 (193)
.............+.++.+++... + ++.+|+++||||| ++||+.++..+.++++.+.
T Consensus 102 -~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~ 180 (236)
T TIGR03864 102 -HGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCR 180 (236)
T ss_pred -cCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHH
Confidence 011111111223455666665432 1 8899999999999 6999999999999998875
Q ss_pred C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 136 S-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 136 ~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
+ |.|+|++ ||+.+.+.. ||++
T Consensus 181 ~~~~tiii~------sH~~~~~~~-~d~i 202 (236)
T TIGR03864 181 DQGLSVLWA------THLVDEIEA-DDRL 202 (236)
T ss_pred hCCCEEEEE------ecChhhHhh-CCEE
Confidence 3 8999999 999998864 8883
No 99
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.97 E-value=5e-31 Score=208.35 Aligned_cols=154 Identities=14% Similarity=0.156 Sum_probs=114.2
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeec--CCcccccccccCCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTL--DDRRAPLASINASSPES 78 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~~~ 78 (193)
|+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.... ...+|++|++ .+..++.+++.+.....
T Consensus 6 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~---~~~~~v~q~~~l~~~~tv~e~l~~~~~~~ 82 (230)
T TIGR01184 6 LTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPG---PDRMVVFQNYSLLPWLTVRENIALAVDRV 82 (230)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCC---hhheEEecCcccCCCCCHHHHHHHHHHhc
Confidence 578999999999999999999999999999999999999998864321 1248999976 23345566544321100
Q ss_pred -CCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh-
Q 029421 79 -YRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE- 135 (193)
Q Consensus 79 -~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~- 135 (193)
.............+.++.+++... + ++.+|+++||||| ++||+.++..+.++++.+.
T Consensus 83 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~ 162 (230)
T TIGR01184 83 LPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWE 162 (230)
T ss_pred ccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHH
Confidence 011111111223455666665432 1 7899999999999 6999999999999998874
Q ss_pred C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 136 S-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 136 ~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
+ |.|||++ |||++++.++||++
T Consensus 163 ~~~~tii~~------sH~~~~~~~~~d~v 185 (230)
T TIGR01184 163 EHRVTVLMV------THDVDEALLLSDRV 185 (230)
T ss_pred hcCCEEEEE------eCCHHHHHHhcCEE
Confidence 4 8999999 99999999999983
No 100
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.97 E-value=6.8e-31 Score=219.54 Aligned_cols=154 Identities=16% Similarity=0.155 Sum_probs=119.0
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh------ccCCceeeEEEeec--CCccccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI------RQGGQRVGFEVVTL--DDRRAPLASIN 72 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~------~~~~~~ig~~~q~~--~~~~~~~~~~~ 72 (193)
|++++|++++|+||||||||||+|+|+|+++|++|+|.++|.++... ...++.++|+||++ ++..++.+++.
T Consensus 18 l~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~ 97 (354)
T TIGR02142 18 FTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNLR 97 (354)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHHHHH
Confidence 57899999999999999999999999999999999999999886321 12356799999986 33456666654
Q ss_pred CCCCCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421 73 ASSPESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVL 131 (193)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll 131 (193)
+.... ...........++++.+++..+. ++.+|+++||||| ++||+.++..+.+++
T Consensus 98 ~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L 174 (354)
T TIGR02142 98 YGMKR---ARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYL 174 (354)
T ss_pred HHhhc---cChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHH
Confidence 43211 01111112244566666665321 8899999999999 699999999999999
Q ss_pred HHHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 132 RILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 132 ~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
+.+. + |.|||++ |||++++..+||++
T Consensus 175 ~~l~~~~g~tiiiv------tH~~~~~~~~~d~i 202 (354)
T TIGR02142 175 ERLHAEFGIPILYV------SHSLQEVLRLADRV 202 (354)
T ss_pred HHHHHhcCCEEEEE------ecCHHHHHHhCCEE
Confidence 8875 4 8999999 99999999999984
No 101
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=2.7e-31 Score=207.11 Aligned_cols=155 Identities=18% Similarity=0.205 Sum_probs=114.7
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh-ccCCceeeEEEeecC--CcccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI-RQGGQRVGFEVVTLD--DRRAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~-~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~~ 77 (193)
|++++| +++|+||||||||||+++|+|+++|++|+|.++|.++... ...++.++|++|++. ...++.+++.+....
T Consensus 21 ~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~ 99 (211)
T cd03264 21 LTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWL 99 (211)
T ss_pred EEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecCCCcccccCCHHHHHHHHHHH
Confidence 578899 9999999999999999999999999999999999876322 223567999999863 233555554321100
Q ss_pred CCCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHHHhC
Q 029421 78 SYRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILES 136 (193)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~ 136 (193)
.............+.++.+++... + ++.+|+++||||| ++||+.++..+.++++.+++
T Consensus 100 -~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 178 (211)
T cd03264 100 -KGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE 178 (211)
T ss_pred -hCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC
Confidence 000111111223345555555422 1 8899999999999 69999999999999998876
Q ss_pred CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 137 NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 137 g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
+.|||++ |||.+++.++||++
T Consensus 179 ~~tii~v------sH~~~~~~~~~d~i 199 (211)
T cd03264 179 DRIVILS------THIVEDVESLCNQV 199 (211)
T ss_pred CCEEEEE------cCCHHHHHHhCCEE
Confidence 7899999 99999999999983
No 102
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=6e-31 Score=209.27 Aligned_cols=156 Identities=17% Similarity=0.293 Sum_probs=117.2
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh--hccCCceeeEEEeec--CCcccccccccCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE--IRQGGQRVGFEVVTL--DDRRAPLASINASSP 76 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~--~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~ 76 (193)
|+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.. ....+..++|+||++ .+..++.+++.+...
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~ 101 (242)
T cd03295 22 LEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPK 101 (242)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999987632 122345799999986 223455565433211
Q ss_pred CCCCCCcccceeeehhhhhhhcccc--cc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHH
Q 029421 77 ESYRWPTVGRYKVDVASFEAIALPE--LQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRI 133 (193)
Q Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~l~~--~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~ 133 (193)
..............++++.+++.. +. ++.+|+++||||| ++||+.++..+.++++.
T Consensus 102 -~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~ 180 (242)
T cd03295 102 -LLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKR 180 (242)
T ss_pred -HcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHH
Confidence 001111111122345566666653 21 8899999999999 69999999999999988
Q ss_pred Hh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 134 LE-S-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 134 l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
++ + |.|||++ ||+.+++..+||++
T Consensus 181 ~~~~~g~tvii~------sH~~~~~~~~~d~i 206 (242)
T cd03295 181 LQQELGKTIVFV------THDIDEAFRLADRI 206 (242)
T ss_pred HHHHcCCEEEEE------ecCHHHHHHhCCEE
Confidence 75 4 8999999 99999999999984
No 103
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=4.4e-31 Score=214.60 Aligned_cols=156 Identities=16% Similarity=0.203 Sum_probs=117.8
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh----hccCCceeeEEEeecC---CcccccccccC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE----IRQGGQRVGFEVVTLD---DRRAPLASINA 73 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~----~~~~~~~ig~~~q~~~---~~~~~~~~~~~ 73 (193)
|+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ....+..+||+||++. ...++.+++.+
T Consensus 27 ~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~ 106 (283)
T PRK13636 27 INIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSF 106 (283)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhccccHHHHHHh
Confidence 5789999999999999999999999999999999999999988631 1233567999999862 12355555433
Q ss_pred CCCCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421 74 SSPESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLR 132 (193)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~ 132 (193)
.... .............++++.+++.... ++.+|+++||||| ++||+.++..+.++++
T Consensus 107 ~~~~-~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~ 185 (283)
T PRK13636 107 GAVN-LKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLV 185 (283)
T ss_pred HHHH-cCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHH
Confidence 2110 0111111112344566666665321 8899999999999 6999999999999998
Q ss_pred HHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 133 ILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 133 ~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+. + |.|||++ |||++++..+||++
T Consensus 186 ~l~~~~g~tillv------sH~~~~~~~~~dri 212 (283)
T PRK13636 186 EMQKELGLTIIIA------THDIDIVPLYCDNV 212 (283)
T ss_pred HHHHhCCCEEEEE------ecCHHHHHHhCCEE
Confidence 875 4 8999999 99999999999984
No 104
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.97 E-value=5.4e-31 Score=210.67 Aligned_cols=157 Identities=15% Similarity=0.255 Sum_probs=115.7
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh---------------ccCCceeeEEEeecC--C
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI---------------RQGGQRVGFEVVTLD--D 63 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~---------------~~~~~~ig~~~q~~~--~ 63 (193)
|+|++|++++|+||||||||||+|+|+|+++|++|+|.++|.++... ...++.++|++|++. +
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 100 (252)
T TIGR03005 21 FSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFP 100 (252)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHhhCeEEEecCcccCC
Confidence 67899999999999999999999999999999999999999876321 123467999999762 2
Q ss_pred cccccccccCCCCCCCCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCcccc
Q 029421 64 RRAPLASINASSPESYRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELF 122 (193)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~ 122 (193)
..+..+++.+..................+.++.+++... + ++.+|+++||||| ++||+.
T Consensus 101 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~ 180 (252)
T TIGR03005 101 HKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPE 180 (252)
T ss_pred CCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 345555543311000000111111223455666665432 1 8899999999999 699999
Q ss_pred ccchHHHHHHHHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 123 SSSFFPAVLRILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 123 ~~~~~~~ll~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
++..+.++++.+. + |.|+|++ ||+++.+..+||++
T Consensus 181 ~~~~l~~~l~~~~~~~~~tiiiv------sH~~~~~~~~~d~i 217 (252)
T TIGR03005 181 LVGEVLNVIRRLASEHDLTMLLV------THEMGFAREFADRV 217 (252)
T ss_pred HHHHHHHHHHHHHHhcCcEEEEE------eCCHHHHHHhcCEE
Confidence 9999999998875 4 8999999 99999999999984
No 105
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.97 E-value=6.7e-31 Score=207.16 Aligned_cols=154 Identities=16% Similarity=0.196 Sum_probs=112.3
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc------cCCceeeEEEeecC--Cccccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR------QGGQRVGFEVVTLD--DRRAPLASIN 72 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~------~~~~~ig~~~q~~~--~~~~~~~~~~ 72 (193)
|+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.... ..++.++|++|++. +..+..+++.
T Consensus 31 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~ 110 (228)
T PRK10584 31 LVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVE 110 (228)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHH
Confidence 578999999999999999999999999999999999999998764221 11357999999862 2345555543
Q ss_pred CCCCCCCCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421 73 ASSPESYRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVL 131 (193)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll 131 (193)
+... ..............+.++.+++.+. + ++.+|+++||||| ++||+.++..+.+++
T Consensus 111 ~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l 189 (228)
T PRK10584 111 LPAL-LRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLL 189 (228)
T ss_pred HHHH-hcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH
Confidence 3210 0001111111223445555555422 1 8899999999999 699999999999999
Q ss_pred HHHh-C-CCcEEEEecCCCCCCChhHHHHHhcC
Q 029421 132 RILE-S-NIPVLASIPAPKSGRDIPAVARLRNH 162 (193)
Q Consensus 132 ~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~ 162 (193)
+.++ + |.|||++ |||.+.+. .||+
T Consensus 190 ~~~~~~~~~tii~~------sH~~~~~~-~~d~ 215 (228)
T PRK10584 190 FSLNREHGTTLILV------THDLQLAA-RCDR 215 (228)
T ss_pred HHHHHhcCCEEEEE------ecCHHHHH-hCCE
Confidence 8874 4 8999999 99998875 4887
No 106
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=4.6e-31 Score=218.28 Aligned_cols=157 Identities=16% Similarity=0.156 Sum_probs=116.7
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh-----ccCCceeeEEEeecC----Ccccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI-----RQGGQRVGFEVVTLD----DRRAPLASI 71 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~-----~~~~~~ig~~~q~~~----~~~~~~~~~ 71 (193)
|+|.+|++++|+|+||||||||+++|+|+++|++|+|.++|.++... ...+++++|+||++. +..+..+++
T Consensus 36 l~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l 115 (327)
T PRK11308 36 FTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQIL 115 (327)
T ss_pred EEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHH
Confidence 67899999999999999999999999999999999999999986322 233567999999862 222222222
Q ss_pred cCCCCCCCCCCcccceeeehhhhhhhcccc-c--------c------------cCCCCCEEEEecC-CCccccccchHHH
Q 029421 72 NASSPESYRWPTVGRYKVDVASFEAIALPE-L--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPA 129 (193)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ 129 (193)
....................++++.+++.. . + ++.+|++||+||| ++||+.++..+.+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~ 195 (327)
T PRK11308 116 EEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLN 195 (327)
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHH
Confidence 111000001111112233456677777642 1 1 8899999999999 6999999999999
Q ss_pred HHHHHhC--CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 130 VLRILES--NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 130 ll~~l~~--g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
+++.+++ |.|+|++ |||+..+.++||++
T Consensus 196 lL~~l~~~~g~til~i------THdl~~~~~~adrv 225 (327)
T PRK11308 196 LMMDLQQELGLSYVFI------SHDLSVVEHIADEV 225 (327)
T ss_pred HHHHHHHHcCCEEEEE------eCCHHHHHHhCCEE
Confidence 9988754 9999999 99999999999995
No 107
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=5e-31 Score=213.52 Aligned_cols=156 Identities=17% Similarity=0.229 Sum_probs=117.1
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh----hccCCceeeEEEeecC---CcccccccccC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE----IRQGGQRVGFEVVTLD---DRRAPLASINA 73 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~----~~~~~~~ig~~~q~~~---~~~~~~~~~~~ 73 (193)
|+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ....++.++|++|++. ...++.+++.+
T Consensus 23 l~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~ 102 (275)
T PRK13639 23 FKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAF 102 (275)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheEEEeeChhhhhccccHHHHHHH
Confidence 5789999999999999999999999999999999999999988631 1123467999999852 22345555432
Q ss_pred CCCCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421 74 SSPESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLR 132 (193)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~ 132 (193)
.... .............+.++.+++..+. ++.+|+++||||| ++||+.++..+.++++
T Consensus 103 ~~~~-~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~ 181 (275)
T PRK13639 103 GPLN-LGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLY 181 (275)
T ss_pred HHHH-cCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHH
Confidence 2110 0111111112334566666664321 8899999999999 6999999999999999
Q ss_pred HHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 133 ILES-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 133 ~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+.+ |.|||++ |||++.+.++||++
T Consensus 182 ~l~~~~~til~v------tH~~~~~~~~~d~i 207 (275)
T PRK13639 182 DLNKEGITIIIS------THDVDLVPVYADKV 207 (275)
T ss_pred HHHHCCCEEEEE------ecCHHHHHHhCCEE
Confidence 8865 9999999 99999999999984
No 108
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.97 E-value=1.7e-30 Score=204.25 Aligned_cols=150 Identities=14% Similarity=0.220 Sum_probs=114.6
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecC--CcccccccccCCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD--DRRAPLASINASSPES 78 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~~~ 78 (193)
|++++|++++|+||||||||||+++|+|+++|++|+|.++|.+.... ..+.++|+||++. +..+..+++.+... .
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~--~~~~~~~~~q~~~~~~~~t~~~~~~~~~~-~ 97 (223)
T TIGR03740 21 LTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRK--DLHKIGSLIESPPLYENLTARENLKVHTT-L 97 (223)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccc--ccccEEEEcCCCCccccCCHHHHHHHHHH-H
Confidence 57899999999999999999999999999999999999999876422 1247899999762 22355555432110 0
Q ss_pred CCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHHHhC-
Q 029421 79 YRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILES- 136 (193)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~- 136 (193)
... ......++++.+++... + ++.+|+++||||| ++||+.++..+.++++.+++
T Consensus 98 ~~~----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~ 173 (223)
T TIGR03740 98 LGL----PDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQ 173 (223)
T ss_pred cCC----CHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHC
Confidence 000 11223455566665432 1 7899999999999 69999999999999998865
Q ss_pred CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 137 NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 137 g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
|.|||++ |||.+++..+||++
T Consensus 174 ~~tiii~------sH~~~~~~~~~d~i 194 (223)
T TIGR03740 174 GITVILS------SHILSEVQQLADHI 194 (223)
T ss_pred CCEEEEE------cCCHHHHHHhcCEE
Confidence 8999999 99999999999984
No 109
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.97 E-value=1.8e-30 Score=204.24 Aligned_cols=154 Identities=18% Similarity=0.339 Sum_probs=115.2
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecCC----cccccccccCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDD----RRAPLASINASSP 76 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~----~~~~~~~~~~~~~ 76 (193)
|+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.. .++.++|++|++.. ..+..+++.+...
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~---~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~ 77 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGK---GWRHIGYVPQRHEFAWDFPISVAHTVMSGRT 77 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchH---hhCcEEEecccccccCCCCccHHHHHHhccc
Confidence 6899999999999999999999999999999999999999987532 24579999997621 1233444322211
Q ss_pred CC---CCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421 77 ES---YRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLR 132 (193)
Q Consensus 77 ~~---~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~ 132 (193)
.. .............+.++.+++.... ++.+|+++|+||| ++||+.++..+.++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~ 157 (223)
T TIGR03771 78 GHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFI 157 (223)
T ss_pred cccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 00 0001111112234556666664321 8899999999999 6999999999999999
Q ss_pred HHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 133 ILES-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 133 ~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+++ |.|||++ |||++++.++||++
T Consensus 158 ~~~~~~~tvii~------sH~~~~~~~~~d~i 183 (223)
T TIGR03771 158 ELAGAGTAILMT------THDLAQAMATCDRV 183 (223)
T ss_pred HHHHcCCEEEEE------eCCHHHHHHhCCEE
Confidence 8875 9999999 99999999999984
No 110
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=6.1e-31 Score=212.89 Aligned_cols=155 Identities=15% Similarity=0.204 Sum_probs=115.4
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh---ccCCceeeEEEeecC---CcccccccccCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI---RQGGQRVGFEVVTLD---DRRAPLASINAS 74 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~---~~~~~~ig~~~q~~~---~~~~~~~~~~~~ 74 (193)
|+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ...++.+||++|++. ...+..+++.+.
T Consensus 23 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~ 102 (274)
T PRK13644 23 LVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFG 102 (274)
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccchHHHHHHhh
Confidence 67899999999999999999999999999999999999999886422 223467999999862 223555554332
Q ss_pred CCCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHH
Q 029421 75 SPESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRI 133 (193)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~ 133 (193)
.... ............+.++.+++.... ++.+|+++||||| ++||+.++..+.++++.
T Consensus 103 ~~~~-~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~ 181 (274)
T PRK13644 103 PENL-CLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKK 181 (274)
T ss_pred HHHc-CCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 1110 011111112234455666654321 8899999999999 69999999999999998
Q ss_pred HhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 134 LES-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 134 l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
+++ |.|||++ |||++.+. .||++
T Consensus 182 l~~~g~til~~------tH~~~~~~-~~d~v 205 (274)
T PRK13644 182 LHEKGKTIVYI------THNLEELH-DADRI 205 (274)
T ss_pred HHhCCCEEEEE------ecCHHHHh-hCCEE
Confidence 876 9999999 99999884 69984
No 111
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=6.5e-31 Score=213.23 Aligned_cols=155 Identities=13% Similarity=0.183 Sum_probs=116.6
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh--hccCCceeeEEEeec---CCcccccccccCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE--IRQGGQRVGFEVVTL---DDRRAPLASINASS 75 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~--~~~~~~~ig~~~q~~---~~~~~~~~~~~~~~ 75 (193)
|+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.. ....++++||+||++ ....++.+++.+..
T Consensus 28 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~ 107 (279)
T PRK13650 28 FHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGL 107 (279)
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhH
Confidence 5789999999999999999999999999999999999999998742 122346799999976 22345566654322
Q ss_pred CCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHH
Q 029421 76 PESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRIL 134 (193)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l 134 (193)
.. .............++++.+++.... ++.+|++|||||| ++||+.++..+.++++.+
T Consensus 108 ~~-~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l 186 (279)
T PRK13650 108 EN-KGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGI 186 (279)
T ss_pred Hh-CCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 11 1111111112344566666665321 8899999999999 699999999999999887
Q ss_pred h-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 135 E-S-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 135 ~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
+ + |.|||++ |||++.+ ..||++
T Consensus 187 ~~~~g~tiliv------tH~~~~~-~~~dri 210 (279)
T PRK13650 187 RDDYQMTVISI------THDLDEV-ALSDRV 210 (279)
T ss_pred HHhcCCEEEEE------ecCHHHH-HhCCEE
Confidence 5 4 8999999 9999988 479983
No 112
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.97 E-value=9.2e-31 Score=206.61 Aligned_cols=153 Identities=17% Similarity=0.216 Sum_probs=112.0
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc---cCCceeeEEEeecC--CcccccccccCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR---QGGQRVGFEVVTLD--DRRAPLASINASS 75 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~---~~~~~ig~~~q~~~--~~~~~~~~~~~~~ 75 (193)
|++++|++++|+||||||||||+++|+|+++|++|+|.++|.++.... ..++.++|+||++. +..+..+++.+..
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~ 100 (230)
T TIGR03410 21 LEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGL 100 (230)
T ss_pred eEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHH
Confidence 678999999999999999999999999999999999999998864221 12457999999862 2335555543221
Q ss_pred CCCCCCCcccceeeehhhhhhhc-cc--------ccc------------cCCCCCEEEEecC-CCccccccchHHHHHHH
Q 029421 76 PESYRWPTVGRYKVDVASFEAIA-LP--------ELQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRI 133 (193)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~-l~--------~~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~ 133 (193)
... ... ......+.++.++ +. .++ ++.+|+++||||| ++||+.++..+.+++..
T Consensus 101 ~~~-~~~---~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~ 176 (230)
T TIGR03410 101 AAL-PRR---SRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRR 176 (230)
T ss_pred Hhc-Ccc---hHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHH
Confidence 110 000 0111122233332 11 111 7899999999999 69999999999999988
Q ss_pred HhC--CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 134 LES--NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 134 l~~--g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
+++ |.|||++ ||+++++..+||++
T Consensus 177 ~~~~~~~tii~~------sH~~~~~~~~~d~v 202 (230)
T TIGR03410 177 LRAEGGMAILLV------EQYLDFARELADRY 202 (230)
T ss_pred HHHcCCcEEEEE------eCCHHHHHHhCCEE
Confidence 754 8999999 99999999999984
No 113
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.97 E-value=1.2e-30 Score=204.10 Aligned_cols=152 Identities=14% Similarity=0.167 Sum_probs=113.5
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecC--CcccccccccCCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD--DRRAPLASINASSPES 78 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~~~ 78 (193)
|++++|++++|+||||||||||+++|+|+++|++|+|.++|+++... ..++.++|++|++. +..+..+++.+... .
T Consensus 32 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~-~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~-~ 109 (214)
T PRK13543 32 FHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG-DRSRFMAYLGHLPGLKADLSTLENLHFLCG-L 109 (214)
T ss_pred EEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch-hhhhceEEeecCcccccCCcHHHHHHHHHH-h
Confidence 57899999999999999999999999999999999999999887432 22456899998752 22344554332110 0
Q ss_pred CCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHHHhC-
Q 029421 79 YRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILES- 136 (193)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~- 136 (193)
.. ........+.++.+++... + ++.+|+++||||| ++||+.++..+.++++.+++
T Consensus 110 ~~---~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 186 (214)
T PRK13543 110 HG---RRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRG 186 (214)
T ss_pred cC---CcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC
Confidence 00 0011122344555554322 1 7899999999999 69999999999999988765
Q ss_pred CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 137 NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 137 g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
|.|+|++ |||..++.++|+++
T Consensus 187 ~~tiii~------sH~~~~~~~~~~~i 207 (214)
T PRK13543 187 GGAALVT------THGAYAAPPVRTRM 207 (214)
T ss_pred CCEEEEE------ecChhhhhhhcceE
Confidence 8999999 99999999999883
No 114
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=8.9e-31 Score=212.42 Aligned_cols=155 Identities=15% Similarity=0.179 Sum_probs=116.3
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeec---CCcccccccccCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTL---DDRRAPLASINASS 75 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~---~~~~~~~~~~~~~~ 75 (193)
|+|.+|++++|+||||||||||+++|+|+++|++|+|.++|+++... ...++.+||+||++ ....++.+++.+..
T Consensus 28 l~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~ 107 (279)
T PRK13635 28 FSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGL 107 (279)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhH
Confidence 57899999999999999999999999999999999999999987432 22346799999976 22345666654322
Q ss_pred CCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHH
Q 029421 76 PESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRIL 134 (193)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l 134 (193)
... ............++++.+++.... ++.+|+++||||| +|||+.++..+.++++.+
T Consensus 108 ~~~-~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l 186 (279)
T PRK13635 108 ENI-GVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQL 186 (279)
T ss_pred hhC-CCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 111 111111112234555666654321 8899999999999 699999999999999887
Q ss_pred hC--CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 135 ES--NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 135 ~~--g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+ |.|||++ |||++.+. .||++
T Consensus 187 ~~~~~~tiliv------sH~~~~~~-~~d~i 210 (279)
T PRK13635 187 KEQKGITVLSI------THDLDEAA-QADRV 210 (279)
T ss_pred HHcCCCEEEEE------ecCHHHHH-cCCEE
Confidence 64 8999999 99999886 49883
No 115
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=5.9e-31 Score=212.63 Aligned_cols=156 Identities=15% Similarity=0.122 Sum_probs=113.6
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh----hccCCceeeEEEeecC---CcccccccccC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE----IRQGGQRVGFEVVTLD---DRRAPLASINA 73 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~----~~~~~~~ig~~~q~~~---~~~~~~~~~~~ 73 (193)
|+|++|++++|+||||||||||+++|+|+++|++|+|.++|+++.. ....++.++|++|++. ...+..+++.+
T Consensus 22 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~ 101 (271)
T PRK13638 22 LDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAF 101 (271)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEEeeChhhccccccHHHHHHH
Confidence 5789999999999999999999999999999999999999988631 1123457999999752 11122333322
Q ss_pred CCCCCCCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421 74 SSPESYRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLR 132 (193)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~ 132 (193)
.... .............+.++.+++..+ + ++.+|+++||||| ++||+.++..+.++++
T Consensus 102 ~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~ 180 (271)
T PRK13638 102 SLRN-LGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIR 180 (271)
T ss_pred HHHH-cCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 1100 001111111123345555555322 1 8899999999999 6999999999999999
Q ss_pred HHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 133 ILES-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 133 ~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+++ |.|||++ |||++.+..+||++
T Consensus 181 ~~~~~g~tii~v------tH~~~~~~~~~d~i 206 (271)
T PRK13638 181 RIVAQGNHVIIS------SHDIDLIYEISDAV 206 (271)
T ss_pred HHHHCCCEEEEE------eCCHHHHHHhCCEE
Confidence 8865 8999999 99999999999984
No 116
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.2e-30 Score=209.03 Aligned_cols=157 Identities=16% Similarity=0.177 Sum_probs=116.3
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecC--CcccccccccCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLD--DRRAPLASINASSP 76 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~ 76 (193)
|++++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ...++.++|+||++. ...+..+++.+...
T Consensus 23 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~ 102 (255)
T PRK11231 23 LSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRS 102 (255)
T ss_pred eEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCccHHHHHHhccc
Confidence 57899999999999999999999999999999999999999876432 223456999999862 22345555433211
Q ss_pred CC---CCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421 77 ES---YRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLR 132 (193)
Q Consensus 77 ~~---~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~ 132 (193)
.. .............+.++.+++... + ++.+|+++||||| ++||+.++..+.++++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~ 182 (255)
T PRK11231 103 PWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMR 182 (255)
T ss_pred hhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence 00 000011111223345555555422 1 8899999999999 6999999999999998
Q ss_pred HHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 133 ILES-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 133 ~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+.+ |.|||++ ||+++++.++||++
T Consensus 183 ~l~~~~~tiii~------tH~~~~~~~~~d~i 208 (255)
T PRK11231 183 ELNTQGKTVVTV------LHDLNQASRYCDHL 208 (255)
T ss_pred HHHHCCCEEEEE------ECCHHHHHHhcCEE
Confidence 8865 8999999 99999999999984
No 117
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.6e-30 Score=214.54 Aligned_cols=156 Identities=13% Similarity=0.193 Sum_probs=117.0
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh------------------hccCCceeeEEEeecC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE------------------IRQGGQRVGFEVVTLD 62 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~------------------~~~~~~~ig~~~q~~~ 62 (193)
|+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.. ....++++||++|++.
T Consensus 47 l~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~ 126 (320)
T PRK13631 47 YTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPE 126 (320)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccccccccccccchHHHHHhcEEEEEECch
Confidence 5789999999999999999999999999999999999999987532 1233567999999762
Q ss_pred ---CcccccccccCCCCCCCCCCcccceeeehhhhhhhccc-cc--------c------------cCCCCCEEEEecC-C
Q 029421 63 ---DRRAPLASINASSPESYRWPTVGRYKVDVASFEAIALP-EL--------Q------------VGADTDLFVIDEV-G 117 (193)
Q Consensus 63 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~--------~------------l~~~p~llllDEp-~ 117 (193)
...+..+++.+.... .............+.++.+++. .+ + ++.+|+++||||| +
T Consensus 127 ~~l~~~tv~eni~~~~~~-~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPts 205 (320)
T PRK13631 127 YQLFKDTIEKDIMFGPVA-LGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTA 205 (320)
T ss_pred hccccchHHHHHHhhHHh-cCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcc
Confidence 112445554332110 0111111112334566666664 22 1 8899999999999 6
Q ss_pred CccccccchHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 118 KMELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 118 ~LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
+||+.++..+.++++.+.+ |.|||++ |||++++.++||++
T Consensus 206 gLD~~~~~~l~~~L~~l~~~g~Tiiiv------tHd~~~~~~~adri 246 (320)
T PRK13631 206 GLDPKGEHEMMQLILDAKANNKTVFVI------THTMEHVLEVADEV 246 (320)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEE------ecCHHHHHHhCCEE
Confidence 9999999999999988765 9999999 99999999999984
No 118
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.97 E-value=6.9e-31 Score=211.84 Aligned_cols=157 Identities=13% Similarity=0.162 Sum_probs=113.5
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh--hccCCceeeEEEeecC----CcccccccccCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE--IRQGGQRVGFEVVTLD----DRRAPLASINAS 74 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~--~~~~~~~ig~~~q~~~----~~~~~~~~~~~~ 74 (193)
|+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.. ....++.++|+||++. +..++.+++.+.
T Consensus 34 l~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~ 113 (267)
T PRK15112 34 FTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFP 113 (267)
T ss_pred EEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchhHHHHHHHH
Confidence 5789999999999999999999999999999999999999988642 1122356999999752 112222232211
Q ss_pred CCCCCCCCcccceeeehhhhhhhccc-c--------cc------------cCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421 75 SPESYRWPTVGRYKVDVASFEAIALP-E--------LQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVLR 132 (193)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~l~~~~l~-~--------~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~ 132 (193)
.................+.++.+++. . ++ ++.+|+++||||| ++||+.++..+.+++.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~ 193 (267)
T PRK15112 114 LRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLML 193 (267)
T ss_pred HHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence 10000011111112234556666662 2 11 7899999999999 6999999999999998
Q ss_pred HHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 133 ILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 133 ~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+. + |.|||++ ||+++.+..+||++
T Consensus 194 ~~~~~~g~tviiv------sH~~~~~~~~~d~i 220 (267)
T PRK15112 194 ELQEKQGISYIYV------TQHLGMMKHISDQV 220 (267)
T ss_pred HHHHHcCcEEEEE------eCCHHHHHHhcCEE
Confidence 875 4 8999999 99999999999984
No 119
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.96 E-value=1.9e-30 Score=208.08 Aligned_cols=147 Identities=15% Similarity=0.212 Sum_probs=114.2
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecC--CcccccccccCCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD--DRRAPLASINASSPES 78 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~~~ 78 (193)
|+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.+... .++.++|++|++. +..++.+++.+....
T Consensus 33 l~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~---~~~~i~~v~q~~~l~~~~tv~enl~~~~~~- 108 (257)
T PRK11247 33 LHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAE---AREDTRLMFQDARLLPWKKVIDNVGLGLKG- 108 (257)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHH---hhCceEEEecCccCCCCCcHHHHHHhcccc-
Confidence 5789999999999999999999999999999999999998876532 2457999999862 234556654432110
Q ss_pred CCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHHH-hC
Q 029421 79 YRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRIL-ES 136 (193)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l-~~ 136 (193)
.......+.++.+++... + ++.+|+++||||| ++||+.++..+.++++.+ ++
T Consensus 109 ------~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~ 182 (257)
T PRK11247 109 ------QWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQ 182 (257)
T ss_pred ------hHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 001223445566665432 1 8899999999999 699999999999999887 44
Q ss_pred -CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 137 -NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 137 -g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
|.|||++ |||.+++..+||++
T Consensus 183 ~~~tviiv------sHd~~~~~~~~d~i 204 (257)
T PRK11247 183 HGFTVLLV------THDVSEAVAMADRV 204 (257)
T ss_pred cCCEEEEE------eCCHHHHHHhCCEE
Confidence 8999999 99999999999984
No 120
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=7.9e-31 Score=216.83 Aligned_cols=157 Identities=15% Similarity=0.194 Sum_probs=114.8
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcc----cCCCCeEEeceEchhh-----cc-CCceeeEEEeecC----Cccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLK----ASNPSLKVQGFYTGEI-----RQ-GGQRVGFEVVTLD----DRRA 66 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~----~~~G~i~~~g~~~~~~-----~~-~~~~ig~~~q~~~----~~~~ 66 (193)
|+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++... .. .++.++|+||++. +.++
T Consensus 28 l~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~ 107 (326)
T PRK11022 28 YSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYT 107 (326)
T ss_pred EEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCC
Confidence 6899999999999999999999999999997 4899999999986322 11 2357999999863 1122
Q ss_pred ccccccCCCCCCCCCCcccceeeehhhhhhhcccc-----------cc------------cCCCCCEEEEecC-CCcccc
Q 029421 67 PLASINASSPESYRWPTVGRYKVDVASFEAIALPE-----------LQ------------VGADTDLFVIDEV-GKMELF 122 (193)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~------------l~~~p~llllDEp-~~LD~~ 122 (193)
..+++....................+.++.+++.+ ++ ++.+|++||+||| ++||+.
T Consensus 108 v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~ 187 (326)
T PRK11022 108 VGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVT 187 (326)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH
Confidence 22211110000001111112233456777777742 11 8899999999999 699999
Q ss_pred ccchHHHHHHHHhC--CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 123 SSSFFPAVLRILES--NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 123 ~~~~~~~ll~~l~~--g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
++..+.++++.+++ |.|+|++ |||+..+.++||++
T Consensus 188 ~~~~il~lL~~l~~~~g~til~i------THdl~~~~~~adri 224 (326)
T PRK11022 188 IQAQIIELLLELQQKENMALVLI------THDLALVAEAAHKI 224 (326)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEE------eCCHHHHHHhCCEE
Confidence 99999999998854 8999999 99999999999995
No 121
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=3.8e-30 Score=195.00 Aligned_cols=140 Identities=24% Similarity=0.302 Sum_probs=107.6
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh-ccCCceeeEEEeecC--CcccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI-RQGGQRVGFEVVTLD--DRRAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~-~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~~ 77 (193)
|++.+|++++|+||||||||||+++|+|+++|++|+|.++|.+.... ...++.++|++|++. +..+..+++.+
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~L---- 96 (173)
T cd03230 21 LTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKL---- 96 (173)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhhc----
Confidence 57899999999999999999999999999999999999999876322 233467999999752 22233333210
Q ss_pred CCCCCcccceeeehhhhhhhcccccccCCCCCEEEEecC-CCccccccchHHHHHHHHhC-CCcEEEEecCCCCCCChhH
Q 029421 78 SYRWPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEV-GKMELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIPA 155 (193)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~ 155 (193)
. .-..+++.+. ..++.+|+++|+||| ++||+.++..+.++++.+.+ |.|+|++ |||.++
T Consensus 97 ----S--------~G~~qrv~la-ral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~------th~~~~ 157 (173)
T cd03230 97 ----S--------GGMKQRLALA-QALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLS------SHILEE 157 (173)
T ss_pred ----C--------HHHHHHHHHH-HHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEE------CCCHHH
Confidence 0 0011122211 236889999999999 69999999999999998865 8999999 999999
Q ss_pred HHHHhcCC
Q 029421 156 VARLRNHP 163 (193)
Q Consensus 156 ~~~~~d~~ 163 (193)
+..+||++
T Consensus 158 ~~~~~d~i 165 (173)
T cd03230 158 AERLCDRV 165 (173)
T ss_pred HHHhCCEE
Confidence 98899873
No 122
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=8.5e-31 Score=212.36 Aligned_cols=156 Identities=19% Similarity=0.207 Sum_probs=115.8
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh--hccCCceeeEEEeecC---CcccccccccCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE--IRQGGQRVGFEVVTLD---DRRAPLASINASS 75 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~--~~~~~~~ig~~~q~~~---~~~~~~~~~~~~~ 75 (193)
|+|.+|++++|+||||||||||+++|+|+++|++|+|.++|+++.. ....+..++|++|++. ...++.+++.+..
T Consensus 25 l~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~ 104 (277)
T PRK13652 25 FIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGP 104 (277)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEecCcccccccccHHHHHHhHH
Confidence 5789999999999999999999999999999999999999987642 2233467899999852 1234455543211
Q ss_pred CCCCCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHHH
Q 029421 76 PESYRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRIL 134 (193)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l 134 (193)
.. .............++++.+++... + ++.+|+++||||| ++||+.++..+.++++.+
T Consensus 105 ~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l 183 (277)
T PRK13652 105 IN-LGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDL 183 (277)
T ss_pred HH-cCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 10 011111111223455566565422 1 8899999999999 699999999999999887
Q ss_pred h-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 135 E-S-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 135 ~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
. + |.|||++ ||+++++.++||++
T Consensus 184 ~~~~g~tvli~------tH~~~~~~~~~drv 208 (277)
T PRK13652 184 PETYGMTVIFS------THQLDLVPEMADYI 208 (277)
T ss_pred HHhcCCEEEEE------ecCHHHHHHhCCEE
Confidence 5 4 8999999 99999999999994
No 123
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=1.1e-30 Score=204.18 Aligned_cols=153 Identities=14% Similarity=0.194 Sum_probs=114.5
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh------hccCCceeeEEEeecC--Cccccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE------IRQGGQRVGFEVVTLD--DRRAPLASIN 72 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~------~~~~~~~ig~~~q~~~--~~~~~~~~~~ 72 (193)
|+|++ ++++|+||||||||||+++|+|+++|++|+|.++|.++.. ....++.++|++|++. +..+..+++.
T Consensus 19 l~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~ 97 (214)
T cd03297 19 FDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLA 97 (214)
T ss_pred EEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHHHHH
Confidence 57899 9999999999999999999999999999999999987531 1123467999999862 2345555543
Q ss_pred CCCCCCCCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421 73 ASSPESYRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVL 131 (193)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll 131 (193)
+..... ..........+.++.+++... + ++.+|+++||||| ++||+.++..+.+++
T Consensus 98 ~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l 174 (214)
T cd03297 98 FGLKRK---RNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPEL 174 (214)
T ss_pred HHHhhC---CHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 321110 000111223455666665431 1 8899999999999 699999999999999
Q ss_pred HHHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 132 RILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 132 ~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
+.+. + |.|||++ |||.+++..+||++
T Consensus 175 ~~~~~~~~~tiii~------sH~~~~~~~~~d~i 202 (214)
T cd03297 175 KQIKKNLNIPVIFV------THDLSEAEYLADRI 202 (214)
T ss_pred HHHHHHcCcEEEEE------ecCHHHHHHhcCEE
Confidence 8875 4 8999999 99999999999984
No 124
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.96 E-value=9.8e-31 Score=206.59 Aligned_cols=156 Identities=15% Similarity=0.201 Sum_probs=113.5
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhccc----CCCCeEEeceEchhhccCCceeeEEEeecC----Cccccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKA----SNPSLKVQGFYTGEIRQGGQRVGFEVVTLD----DRRAPLASIN 72 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~----~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~----~~~~~~~~~~ 72 (193)
|++++|++++|+||||||||||+++|+|+++| ++|+|.++|+++......++.++|++|++. +..+..++..
T Consensus 7 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~ 86 (230)
T TIGR02770 7 LSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTMGNHAI 86 (230)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCHHHHHH
Confidence 57899999999999999999999999999999 899999999887433222357999999862 1123333221
Q ss_pred CCCCCCCCCCcccceeeehhhhhhhcccc-----------cc------------cCCCCCEEEEecC-CCccccccchHH
Q 029421 73 ASSPESYRWPTVGRYKVDVASFEAIALPE-----------LQ------------VGADTDLFVIDEV-GKMELFSSSFFP 128 (193)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~------------l~~~p~llllDEp-~~LD~~~~~~~~ 128 (193)
..... .............+.++.+++.+ ++ ++.+|+++||||| ++||+.++..+.
T Consensus 87 ~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~ 165 (230)
T TIGR02770 87 ETLRS-LGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVL 165 (230)
T ss_pred HHHHH-cCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHH
Confidence 11100 00011111122344555555541 11 7899999999999 699999999999
Q ss_pred HHHHHHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 129 AVLRILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 129 ~ll~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
++++.++ + |.|||++ ||+++++..+||++
T Consensus 166 ~~l~~~~~~~~~tiii~------sH~~~~~~~~~d~i 196 (230)
T TIGR02770 166 KLLRELRQLFGTGILLI------THDLGVVARIADEV 196 (230)
T ss_pred HHHHHHHHhcCCEEEEE------eCCHHHHHHhCCEE
Confidence 9998875 3 8999999 99999999999984
No 125
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=8.8e-31 Score=212.52 Aligned_cols=156 Identities=13% Similarity=0.193 Sum_probs=114.8
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh------ccCCceeeEEEeecC---Ccccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI------RQGGQRVGFEVVTLD---DRRAPLASI 71 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~------~~~~~~ig~~~q~~~---~~~~~~~~~ 71 (193)
|+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ...++.++|++|++. ...++.+++
T Consensus 28 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l 107 (280)
T PRK13649 28 LTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDV 107 (280)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhccccHHHHH
Confidence 57899999999999999999999999999999999999999876321 223467999999751 123455554
Q ss_pred cCCCCCCCCCCcccceeeehhhhhhhcccc---------cc------------cCCCCCEEEEecC-CCccccccchHHH
Q 029421 72 NASSPESYRWPTVGRYKVDVASFEAIALPE---------LQ------------VGADTDLFVIDEV-GKMELFSSSFFPA 129 (193)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---------~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ 129 (193)
.+.... .............++++.+++.. ++ ++.+|+++||||| ++||+.++..+.+
T Consensus 108 ~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~ 186 (280)
T PRK13649 108 AFGPQN-FGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMT 186 (280)
T ss_pred HHHHHH-cCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 321110 00111011112234455555531 11 8899999999999 6999999999999
Q ss_pred HHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 130 VLRILES-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 130 ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
+++.+++ |.|||++ ||+.+++..+||++
T Consensus 187 ~l~~~~~~~~tiiiv------sH~~~~~~~~~d~i 215 (280)
T PRK13649 187 LFKKLHQSGMTIVLV------THLMDDVANYADFV 215 (280)
T ss_pred HHHHHHHCCCEEEEE------eccHHHHHHhCCEE
Confidence 9998865 8999999 99999999999983
No 126
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.96 E-value=2.4e-30 Score=197.58 Aligned_cols=144 Identities=14% Similarity=0.140 Sum_probs=108.4
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh---ccCCceeeEEEeecC-----Cccccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI---RQGGQRVGFEVVTLD-----DRRAPLASIN 72 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~---~~~~~~ig~~~q~~~-----~~~~~~~~~~ 72 (193)
|++++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ...++.++|++|++. +..+..+++.
T Consensus 21 ~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~ 100 (182)
T cd03215 21 FEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIA 100 (182)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHH
Confidence 57899999999999999999999999999999999999999886432 123467999998731 1223333322
Q ss_pred CCCCCCCCCCcccceeeehhhhhhhcccccccCCCCCEEEEecC-CCccccccchHHHHHHHHhC-CCcEEEEecCCCCC
Q 029421 73 ASSPESYRWPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEV-GKMELFSSSFFPAVLRILES-NIPVLASIPAPKSG 150 (193)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~t 150 (193)
+... .-.-..+++.+. ..++.+|+++||||| ++||+.++..+.++++.+.+ |.|+|++ |
T Consensus 101 ~~~~------------LS~G~~qrl~la-~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~------s 161 (182)
T cd03215 101 LSSL------------LSGGNQQKVVLA-RWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLI------S 161 (182)
T ss_pred HHhh------------cCHHHHHHHHHH-HHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEE------e
Confidence 2100 000011122221 236889999999999 69999999999999998865 8999999 9
Q ss_pred CChhHHHHHhcCC
Q 029421 151 RDIPAVARLRNHP 163 (193)
Q Consensus 151 Hd~~~~~~~~d~~ 163 (193)
|+.+++.++||++
T Consensus 162 h~~~~~~~~~d~v 174 (182)
T cd03215 162 SELDELLGLCDRI 174 (182)
T ss_pred CCHHHHHHhCCEE
Confidence 9999999999983
No 127
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.96 E-value=2.4e-30 Score=200.53 Aligned_cols=150 Identities=13% Similarity=0.097 Sum_probs=113.9
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh-ccCCceeeEEEeecC--CcccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI-RQGGQRVGFEVVTLD--DRRAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~-~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~~ 77 (193)
|+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+.... ...++.++|++|++. +..+..+++.+....
T Consensus 21 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~ 100 (201)
T cd03231 21 FTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHAD 100 (201)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEeccccccCCCcCHHHHHHhhccc
Confidence 57899999999999999999999999999999999999999876322 233567999998752 234555554332110
Q ss_pred CCCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHHHhC
Q 029421 78 SYRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILES 136 (193)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~ 136 (193)
. ......+.++.+++... + ++.+|+++||||| ++||+.++..+.++++.+++
T Consensus 101 ----~---~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 173 (201)
T cd03231 101 ----H---SDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCA 173 (201)
T ss_pred ----c---cHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Confidence 0 11223344555555422 1 8899999999999 69999999999999988765
Q ss_pred -CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 137 -NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 137 -g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
|.|+|++ ||+......+|++.
T Consensus 174 ~g~tiii~------sH~~~~~~~~~~~~ 195 (201)
T cd03231 174 RGGMVVLT------THQDLGLSEAGARE 195 (201)
T ss_pred CCCEEEEE------ecCchhhhhcccee
Confidence 8999999 99988888888873
No 128
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=1.4e-30 Score=206.04 Aligned_cols=156 Identities=15% Similarity=0.199 Sum_probs=116.4
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecC--CcccccccccCCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD--DRRAPLASINASSPES 78 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~~~ 78 (193)
|++++|++++|+||||||||||+++|+|+++|++|+|.++|.++......++.++|++|++. ...+..+++.+....
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~- 99 (232)
T cd03300 21 LDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRL- 99 (232)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEecccccCCCCcHHHHHHHHHHh-
Confidence 57899999999999999999999999999999999999999887543333567999999863 223455554321110
Q ss_pred CCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHHhC-
Q 029421 79 YRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILES- 136 (193)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~- 136 (193)
.............++++.+++.+.. ++.+|+++||||| +|||+.++..+.++++.+++
T Consensus 100 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~ 179 (232)
T cd03300 100 KKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKE 179 (232)
T ss_pred cCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH
Confidence 0000001111233455555554321 8899999999999 69999999999999988753
Q ss_pred -CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 137 -NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 137 -g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
|.|||++ ||+.+++.++||++
T Consensus 180 ~~~tiii~------sh~~~~~~~~~d~i 201 (232)
T cd03300 180 LGITFVFV------THDQEEALTMSDRI 201 (232)
T ss_pred cCCEEEEE------eCCHHHHHHhcCEE
Confidence 8999999 99999999999984
No 129
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.9e-30 Score=209.08 Aligned_cols=157 Identities=17% Similarity=0.139 Sum_probs=116.5
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeec--CCcccccccccCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTL--DDRRAPLASINASSP 76 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~ 76 (193)
|++++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ...++.++|++|++ ....+..+++.+...
T Consensus 32 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~ 111 (265)
T PRK10575 32 LTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRY 111 (265)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcc
Confidence 67899999999999999999999999999999999999999876321 22345799999975 233455555443211
Q ss_pred CCCC---CCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421 77 ESYR---WPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLR 132 (193)
Q Consensus 77 ~~~~---~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~ 132 (193)
.... ...........+.++.+++... + ++.+|+++||||| ++||+.++..+.+++.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~ 191 (265)
T PRK10575 112 PWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVH 191 (265)
T ss_pred cccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence 1000 0000111223455566665432 1 8899999999999 6999999999999998
Q ss_pred HHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 133 ILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 133 ~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+. + |.|||++ ||+++++.++||++
T Consensus 192 ~l~~~~~~tiii~------sH~~~~i~~~~d~i 218 (265)
T PRK10575 192 RLSQERGLTVIAV------LHDINMAARYCDYL 218 (265)
T ss_pred HHHHhcCCEEEEE------eCCHHHHHHhCCEE
Confidence 875 4 8999999 99999999999984
No 130
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.96 E-value=1.7e-30 Score=208.23 Aligned_cols=157 Identities=18% Similarity=0.232 Sum_probs=117.3
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecC--CcccccccccCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLD--DRRAPLASINASSP 76 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~ 76 (193)
|++++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ...++.++|++|++. ...+..+++.+...
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~ 101 (256)
T TIGR03873 22 VTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVVALGRI 101 (256)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCHHHHHHhcch
Confidence 57899999999999999999999999999999999999999876432 122456899999862 23455666543211
Q ss_pred CC---CCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421 77 ES---YRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLR 132 (193)
Q Consensus 77 ~~---~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~ 132 (193)
.. .............+.++.+++.+. + ++.+|+++||||| ++||+.++..+.++++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~ 181 (256)
T TIGR03873 102 PHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVR 181 (256)
T ss_pred hhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHH
Confidence 00 000111111223455566655432 1 7889999999999 6999999999999999
Q ss_pred HHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 133 ILES-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 133 ~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+++ |.|||++ ||+++.+.++||++
T Consensus 182 ~~~~~~~tiii~------sH~~~~~~~~~d~i 207 (256)
T TIGR03873 182 ELAATGVTVVAA------LHDLNLAASYCDHV 207 (256)
T ss_pred HHHhcCCEEEEE------eCCHHHHHHhCCEE
Confidence 8876 8999999 99999999999984
No 131
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.5e-30 Score=196.13 Aligned_cols=180 Identities=18% Similarity=0.266 Sum_probs=128.6
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh--hccCCceeeEEEeec--CCcccccccccCCC-
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE--IRQGGQRVGFEVVTL--DDRRAPLASINASS- 75 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~--~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~- 75 (193)
++|++|.+++++||||||||||+.+++.++++++|+|+++|.++.. .....++++..-|.. ....++.+-..+..
T Consensus 22 l~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRf 101 (252)
T COG4604 22 LDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRF 101 (252)
T ss_pred eeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHHHhhchhhheeEHHHHhhcCCC
Confidence 4689999999999999999999999999999999999999998732 223334455544433 22333333333322
Q ss_pred CCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHH
Q 029421 76 PESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRIL 134 (193)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l 134 (193)
++...+...++.....++++.+.+.+++ ++++++.++|||| ++||......++++++.+
T Consensus 102 PYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrl 181 (252)
T COG4604 102 PYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRL 181 (252)
T ss_pred cccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHH
Confidence 2233334444445556666666665543 8899999999999 899999999999999988
Q ss_pred hC--CCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCCh-hHHHHHHHHHHHH
Q 029421 135 ES--NIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNR-DSLKDNIYYQLTD 188 (193)
Q Consensus 135 ~~--g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~-~~l~~~~~~~~~~ 188 (193)
.+ |+||++| -||++++..|+|++ +|+++ ..+++ +.+...+.+.+.+
T Consensus 182 a~el~KtiviV------lHDINfAS~YsD~IVAlK~G~vv--~~G~~~eii~~~~L~eiyd 234 (252)
T COG4604 182 ADELGKTIVVV------LHDINFASCYSDHIVALKNGKVV--KQGSPDEIIQPEILSEIYD 234 (252)
T ss_pred HHHhCCeEEEE------EecccHHHhhhhheeeecCCEEE--ecCCHHHhcCHHHHHHHhc
Confidence 64 9999999 89999999999993 45543 33343 3455666555443
No 132
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=4.5e-30 Score=195.45 Aligned_cols=142 Identities=21% Similarity=0.332 Sum_probs=107.5
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh----ccCCceeeEEEeecC--CcccccccccCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI----RQGGQRVGFEVVTLD--DRRAPLASINAS 74 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~----~~~~~~ig~~~q~~~--~~~~~~~~~~~~ 74 (193)
|++++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ...++.++|++|++. ...+..++..+.
T Consensus 21 ~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~ 100 (178)
T cd03229 21 LNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG 100 (178)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeec
Confidence 57899999999999999999999999999999999999999876432 234567999998752 112333332211
Q ss_pred CCCCCCCCcccceeeehhhhhhhcccccccCCCCCEEEEecC-CCccccccchHHHHHHHHhC--CCcEEEEecCCCCCC
Q 029421 75 SPESYRWPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEV-GKMELFSSSFFPAVLRILES--NIPVLASIPAPKSGR 151 (193)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~--g~tvl~~~~~~~~tH 151 (193)
.-.-..+++.+. ..++.+|++++|||| ++||+.++..+.++++.+++ |.|+|++ ||
T Consensus 101 --------------lS~G~~qr~~la-~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~------sH 159 (178)
T cd03229 101 --------------LSGGQQQRVALA-RALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLV------TH 159 (178)
T ss_pred --------------CCHHHHHHHHHH-HHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE------eC
Confidence 000011122211 236789999999999 69999999999999988764 7999999 99
Q ss_pred ChhHHHHHhcCC
Q 029421 152 DIPAVARLRNHP 163 (193)
Q Consensus 152 d~~~~~~~~d~~ 163 (193)
|.+++..+||++
T Consensus 160 ~~~~~~~~~d~i 171 (178)
T cd03229 160 DLDEAARLADRV 171 (178)
T ss_pred CHHHHHHhcCEE
Confidence 999998899883
No 133
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.96 E-value=2.4e-30 Score=207.72 Aligned_cols=156 Identities=15% Similarity=0.205 Sum_probs=115.8
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecC--CcccccccccCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLD--DRRAPLASINASSP 76 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~ 76 (193)
|+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ...++.++|++|++. ...++.+++.+...
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~ 102 (258)
T PRK13548 23 LTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRA 102 (258)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhc
Confidence 57899999999999999999999999999999999999999876322 123457999999862 33455555443211
Q ss_pred CCCCCCcccceeeehhhhhhhccccc--------c------------cC------CCCCEEEEecC-CCccccccchHHH
Q 029421 77 ESYRWPTVGRYKVDVASFEAIALPEL--------Q------------VG------ADTDLFVIDEV-GKMELFSSSFFPA 129 (193)
Q Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~------~~p~llllDEp-~~LD~~~~~~~~~ 129 (193)
.. ............+.++.+++... + ++ .+|+++||||| ++||+.++..+.+
T Consensus 103 ~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~ 181 (258)
T PRK13548 103 PH-GLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLR 181 (258)
T ss_pred cc-CCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHH
Confidence 11 00001111223445566665432 1 55 49999999999 6999999999999
Q ss_pred HHHHHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 130 VLRILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 130 ll~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
+++.+. + |.|||++ |||++++..+||++
T Consensus 182 ~l~~~~~~~~~tiii~------sH~~~~~~~~~d~i 211 (258)
T PRK13548 182 LARQLAHERGLAVIVV------LHDLNLAARYADRI 211 (258)
T ss_pred HHHHHHHhcCCEEEEE------ECCHHHHHHhcCEE
Confidence 999876 5 8999999 99999999999984
No 134
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.96 E-value=5.4e-30 Score=215.08 Aligned_cols=157 Identities=15% Similarity=0.138 Sum_probs=126.1
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEch---hhccCCceeeEEEeec--CCcccccccccCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTG---EIRQGGQRVGFEVVTL--DDRRAPLASINASS 75 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~---~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~ 75 (193)
|+|.+||+.+|+|.||||||||+++|.|+++|++|+|.++|+.+. .....+..||+++|++ .+.+++.+|+.+..
T Consensus 25 l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~ 104 (501)
T COG3845 25 LSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGL 104 (501)
T ss_pred eeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeeccccccccchhhhhhhcC
Confidence 679999999999999999999999999999999999999999863 2234466799999998 56788899977765
Q ss_pred CCCC--CCCcccceeeehhhhhhhccc--------ccc------------cCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421 76 PESY--RWPTVGRYKVDVASFEAIALP--------ELQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVLR 132 (193)
Q Consensus 76 ~~~~--~~~~~~~~~~~~~~l~~~~l~--------~~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~ 132 (193)
.... ............+..+++|+. +++ |..+|++|||||| +-|-|.....+..+++
T Consensus 105 e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~ 184 (501)
T COG3845 105 EPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILR 184 (501)
T ss_pred ccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence 4321 111122223445566666654 111 8899999999999 4899999899999999
Q ss_pred HHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 133 ILES-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 133 ~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+++ |+|||++ ||.+.++.++||++
T Consensus 185 ~l~~~G~tIi~I------THKL~Ev~~iaDrv 210 (501)
T COG3845 185 RLAAEGKTIIFI------THKLKEVMAIADRV 210 (501)
T ss_pred HHHHCCCEEEEE------eccHHHHHHhhCee
Confidence 9887 9999999 99999999999994
No 135
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.9e-30 Score=207.73 Aligned_cols=157 Identities=13% Similarity=0.183 Sum_probs=115.6
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc---cCCceeeEEEeec--CCcccccccccCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR---QGGQRVGFEVVTL--DDRRAPLASINASS 75 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~---~~~~~ig~~~q~~--~~~~~~~~~~~~~~ 75 (193)
|++++|++++|+||||||||||+++|+|+++|++|+|.++|.++.... ..+..++|+||++ .+..++.+++.+..
T Consensus 26 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~ 105 (255)
T PRK11300 26 LEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQ 105 (255)
T ss_pred eEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhh
Confidence 578999999999999999999999999999999999999998864221 1234588999976 23345556544321
Q ss_pred CCC---------CC---CCcc--cceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCcc
Q 029421 76 PES---------YR---WPTV--GRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKME 120 (193)
Q Consensus 76 ~~~---------~~---~~~~--~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD 120 (193)
... .. .... .......+.++.+++... + ++.+|+++||||| ++||
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD 185 (255)
T PRK11300 106 HQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLN 185 (255)
T ss_pred hccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCC
Confidence 100 00 0000 001123345556665432 1 8899999999999 6999
Q ss_pred ccccchHHHHHHHHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 121 LFSSSFFPAVLRILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 121 ~~~~~~~~~ll~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
+.++..+.+++..++ + |.|||++ ||+.+++..+||++
T Consensus 186 ~~~~~~l~~~L~~~~~~~~~tii~~------sH~~~~~~~~~d~i 224 (255)
T PRK11300 186 PKETKELDELIAELRNEHNVTVLLI------EHDMKLVMGISDRI 224 (255)
T ss_pred HHHHHHHHHHHHHHHhhcCCEEEEE------eCCHHHHHHhCCEE
Confidence 999999999998875 4 8999999 99999999999984
No 136
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.96 E-value=2.1e-30 Score=208.81 Aligned_cols=157 Identities=14% Similarity=0.186 Sum_probs=116.1
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecC--CcccccccccCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLD--DRRAPLASINASSP 76 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~ 76 (193)
|++.+|++++|+||||||||||+++|+|+++|++|+|.++|+++... ...+..++|+||++. ...+..+++.+...
T Consensus 28 l~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~ 107 (265)
T PRK10253 28 VEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELVARGRY 107 (265)
T ss_pred eEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcc
Confidence 67899999999999999999999999999999999999999876432 222457999999863 22345555433211
Q ss_pred CCC---CCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421 77 ESY---RWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLR 132 (193)
Q Consensus 77 ~~~---~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~ 132 (193)
... ............+.++.+++.+. + ++.+|+++||||| ++||+.++..+.+++.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~ 187 (265)
T PRK10253 108 PHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLS 187 (265)
T ss_pred cccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHH
Confidence 000 00001111223455566665432 1 8899999999999 6999999999999998
Q ss_pred HHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 133 ILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 133 ~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+. + |.|||++ |||++++.++||++
T Consensus 188 ~l~~~~~~tiii~------tH~~~~~~~~~d~i 214 (265)
T PRK10253 188 ELNREKGYTLAAV------LHDLNQACRYASHL 214 (265)
T ss_pred HHHHhcCCEEEEE------eCCHHHHHHhCCEE
Confidence 875 3 8999999 99999999999984
No 137
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.3e-30 Score=206.60 Aligned_cols=154 Identities=12% Similarity=0.102 Sum_probs=113.0
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc---cCCceeeEEEeecC--CcccccccccCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR---QGGQRVGFEVVTLD--DRRAPLASINASS 75 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~---~~~~~ig~~~q~~~--~~~~~~~~~~~~~ 75 (193)
|+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.... ..++.++|++|++. +..++.+++.+..
T Consensus 26 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~ 105 (237)
T PRK11614 26 LHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGG 105 (237)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhh
Confidence 578999999999999999999999999999999999999998864321 23457999999762 2345555543321
Q ss_pred CCCCCCCcccceeeehhhhhhh-ccc--------ccc------------cCCCCCEEEEecC-CCccccccchHHHHHHH
Q 029421 76 PESYRWPTVGRYKVDVASFEAI-ALP--------ELQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRI 133 (193)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~-~l~--------~~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~ 133 (193)
.. .. .........+.++.+ ++. .++ ++.+|+++||||| ++||+.++..+.++++.
T Consensus 106 ~~-~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~ 182 (237)
T PRK11614 106 FF-AE--RDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQ 182 (237)
T ss_pred hc-cC--hhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHH
Confidence 10 00 000011112222333 121 111 7889999999999 69999999999999998
Q ss_pred HhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 134 LES-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 134 l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
+++ |.|||++ |||++++.++||++
T Consensus 183 ~~~~~~tiii~------sH~~~~~~~~~d~i 207 (237)
T PRK11614 183 LREQGMTIFLV------EQNANQALKLADRG 207 (237)
T ss_pred HHHCCCEEEEE------eCcHHHHHhhCCEE
Confidence 866 9999999 99999999999984
No 138
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.96 E-value=2.2e-30 Score=205.47 Aligned_cols=156 Identities=15% Similarity=0.229 Sum_probs=117.2
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeec--CCcccccccccCCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTL--DDRRAPLASINASSPES 78 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~~~ 78 (193)
|++.+|++++|+||||||||||+++|+|+++|++|+|.++|.++......++.++|+||++ ++..+..+++.+... .
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~-~ 99 (237)
T TIGR00968 21 LEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNIAFGLE-I 99 (237)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHHHHHHhHHH-h
Confidence 5789999999999999999999999999999999999999988753333356799999986 223455555433211 0
Q ss_pred CCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHHHhC-
Q 029421 79 YRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILES- 136 (193)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~- 136 (193)
.............+.++.+++... + ++.+|+++||||| ++||+.++..+.++++.+++
T Consensus 100 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~ 179 (237)
T TIGR00968 100 RKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDE 179 (237)
T ss_pred cCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh
Confidence 001111111223455666665321 1 8899999999999 69999999999999988754
Q ss_pred -CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 137 -NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 137 -g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
|.|||++ ||+.+++.++||++
T Consensus 180 ~~~tvli~------sH~~~~~~~~~d~i 201 (237)
T TIGR00968 180 VHVTTVFV------THDQEEAMEVADRI 201 (237)
T ss_pred cCCEEEEE------eCCHHHHHhhcCEE
Confidence 8999999 99999999999984
No 139
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.96 E-value=3.3e-30 Score=224.37 Aligned_cols=157 Identities=12% Similarity=0.097 Sum_probs=119.4
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh---ccCCceeeEEEeec--CCcccccccccCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI---RQGGQRVGFEVVTL--DDRRAPLASINASS 75 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~---~~~~~~ig~~~q~~--~~~~~~~~~~~~~~ 75 (193)
|+|.+|++++|+||||||||||+|+|+|+++|++|+|.++|.++... ...++.++|++|++ .+..++.+++.+..
T Consensus 25 ~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~ 104 (501)
T PRK10762 25 LNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGR 104 (501)
T ss_pred EEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhcc
Confidence 67899999999999999999999999999999999999999886321 11245699999986 33446666654432
Q ss_pred CCC--CC-CCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421 76 PES--YR-WPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVL 131 (193)
Q Consensus 76 ~~~--~~-~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll 131 (193)
... .. ...........+.++.+++.+.. ++.+|++|||||| ++||+.++..+.+++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l 184 (501)
T PRK10762 105 EFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVI 184 (501)
T ss_pred ccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHH
Confidence 110 00 01111112344567777765431 8899999999999 699999999999999
Q ss_pred HHHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 132 RILES-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 132 ~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
+.+++ |.|||++ |||++++..+||++
T Consensus 185 ~~l~~~~~tvii~------sHd~~~~~~~~d~i 211 (501)
T PRK10762 185 RELKSQGRGIVYI------SHRLKEIFEICDDV 211 (501)
T ss_pred HHHHHCCCEEEEE------eCCHHHHHHhCCEE
Confidence 98866 8999999 99999999999984
No 140
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.1e-30 Score=210.22 Aligned_cols=173 Identities=14% Similarity=0.231 Sum_probs=126.4
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcc-c----CCCCeEEeceEchhh------ccCCceeeEEEeecCCcccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLK-A----SNPSLKVQGFYTGEI------RQGGQRVGFEVVTLDDRRAPLA 69 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~-~----~~G~i~~~g~~~~~~------~~~~~~ig~~~q~~~~~~~~~~ 69 (193)
|++++||++||+|.|||||||+.+.|+|+++ | .+|+|.++|+++... +.++++|+++||++...+++..
T Consensus 26 ~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~ 105 (316)
T COG0444 26 FELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVM 105 (316)
T ss_pred EEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCchhhcCChh
Confidence 6799999999999999999999999999998 3 578999999975221 2346789999999843333332
Q ss_pred cccCCCCCCCC----C-Ccccceeeehhhhhhhcccccc-----------------------cCCCCCEEEEecC-CCcc
Q 029421 70 SINASSPESYR----W-PTVGRYKVDVASFEAIALPELQ-----------------------VGADTDLFVIDEV-GKME 120 (193)
Q Consensus 70 ~~~~~~~~~~~----~-~~~~~~~~~~~~l~~~~l~~~~-----------------------l~~~p~llllDEp-~~LD 120 (193)
.+.....+... . ...+....+.+.++.+++.+-. ++.+|++||+||| ++||
T Consensus 106 ~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALD 185 (316)
T COG0444 106 TIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALD 185 (316)
T ss_pred hHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhh
Confidence 22111111110 1 1112234566788888876431 8899999999999 6999
Q ss_pred ccccchHHHHHHHHhC--CCcEEEEecCCCCCCChhHHHHHhcCCCcEEE--EeCCCChhHHH
Q 029421 121 LFSSSFFPAVLRILES--NIPVLASIPAPKSGRDIPAVARLRNHPGATIF--TLSPGNRDSLK 179 (193)
Q Consensus 121 ~~~~~~~~~ll~~l~~--g~tvl~~~~~~~~tHd~~~~~~~~d~~~~~~~--~~~~~~~~~l~ 179 (193)
...+.++.++++.+++ |.++|++ |||+..+.++||++.+... .++.++.+++.
T Consensus 186 vt~QaqIl~Ll~~l~~e~~~aiilI------THDl~vva~~aDri~VMYaG~iVE~g~~~~i~ 242 (316)
T COG0444 186 VTVQAQILDLLKELQREKGTALILI------THDLGVVAEIADRVAVMYAGRIVEEGPVEEIF 242 (316)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEE------eCCHHHHHHhcceEEEEECcEEEEeCCHHHHh
Confidence 9999999999999874 9999999 9999999999999654332 33444444443
No 141
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.96 E-value=2e-30 Score=205.67 Aligned_cols=156 Identities=17% Similarity=0.187 Sum_probs=112.3
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh-ccCCceeeEEEee-c--CCcccccccccCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI-RQGGQRVGFEVVT-L--DDRRAPLASINASSP 76 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~-~~~~~~ig~~~q~-~--~~~~~~~~~~~~~~~ 76 (193)
|+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+.... ...++.++|++|+ + ....++.+++.+...
T Consensus 42 ~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~~ 121 (236)
T cd03267 42 FTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAA 121 (236)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999875321 2234678999843 2 223344444322111
Q ss_pred CCCCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh
Q 029421 77 ESYRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE 135 (193)
Q Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~ 135 (193)
..............+.++.+++... + ++.+|+++||||| ++||+.++..+.++++.++
T Consensus 122 -~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 200 (236)
T cd03267 122 -IYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYN 200 (236)
T ss_pred -HcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHH
Confidence 0001111111122344555555321 1 8899999999999 6999999999999999875
Q ss_pred -C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 136 -S-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 136 -~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
+ |.|||++ ||+.+++..+||++
T Consensus 201 ~~~~~tiiiv------sH~~~~~~~~~d~i 224 (236)
T cd03267 201 RERGTTVLLT------SHYMKDIEALARRV 224 (236)
T ss_pred hcCCCEEEEE------ecCHHHHHHhCCEE
Confidence 4 8999999 99999999999984
No 142
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.96 E-value=1.5e-30 Score=215.40 Aligned_cols=157 Identities=15% Similarity=0.196 Sum_probs=114.6
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccC---CCCeEEeceEchhh-----cc-CCceeeEEEeecC----Ccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKAS---NPSLKVQGFYTGEI-----RQ-GGQRVGFEVVTLD----DRRAP 67 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~---~G~i~~~g~~~~~~-----~~-~~~~ig~~~q~~~----~~~~~ 67 (193)
|+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.++... +. .++.++|+||++. +.++.
T Consensus 37 l~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v 116 (330)
T PRK09473 37 FSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRV 116 (330)
T ss_pred EEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCH
Confidence 678999999999999999999999999999996 99999999986322 11 2357999999862 22233
Q ss_pred cccccCCCCCCCCCCcccceeeehhhhhhhcccc-----------cc------------cCCCCCEEEEecC-CCccccc
Q 029421 68 LASINASSPESYRWPTVGRYKVDVASFEAIALPE-----------LQ------------VGADTDLFVIDEV-GKMELFS 123 (193)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~------------l~~~p~llllDEp-~~LD~~~ 123 (193)
.+++....................+.++.+++.+ ++ ++.+|++||+||| ++||+.+
T Consensus 117 ~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~ 196 (330)
T PRK09473 117 GEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTV 196 (330)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHH
Confidence 2222111100000111111223445566666542 11 8899999999999 6999999
Q ss_pred cchHHHHHHHHhC--CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 124 SSFFPAVLRILES--NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 124 ~~~~~~ll~~l~~--g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
+..+.++++.+++ |.|+|++ |||+..+.++||++
T Consensus 197 ~~~i~~lL~~l~~~~g~til~i------THdl~~~~~~~Dri 232 (330)
T PRK09473 197 QAQIMTLLNELKREFNTAIIMI------THDLGVVAGICDKV 232 (330)
T ss_pred HHHHHHHHHHHHHHcCCEEEEE------ECCHHHHHHhCCEE
Confidence 9999999998854 8999999 99999999999995
No 143
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.96 E-value=2.7e-30 Score=203.20 Aligned_cols=156 Identities=16% Similarity=0.277 Sum_probs=111.4
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEe--ce--Echhhc-----c-CCceeeEEEeecC--Cccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQ--GF--YTGEIR-----Q-GGQRVGFEVVTLD--DRRAPL 68 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~--g~--~~~~~~-----~-~~~~ig~~~q~~~--~~~~~~ 68 (193)
|+|.+|++++|+||||||||||+++|+|+++|++|+|.++ |. ++.... . .++.++|++|++. +..++.
T Consensus 29 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 108 (224)
T TIGR02324 29 LTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSAL 108 (224)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecccccCCCccHH
Confidence 5789999999999999999999999999999999999998 42 332111 1 2356999999862 233444
Q ss_pred ccccCCCCCCCCCCcccceeeehhhhhhhcccc---------cc------------cCCCCCEEEEecC-CCccccccch
Q 029421 69 ASINASSPESYRWPTVGRYKVDVASFEAIALPE---------LQ------------VGADTDLFVIDEV-GKMELFSSSF 126 (193)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---------~~------------l~~~p~llllDEp-~~LD~~~~~~ 126 (193)
+++.+..... ............+.++.+++.. ++ ++.+|+++||||| ++||+.++..
T Consensus 109 e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~ 187 (224)
T TIGR02324 109 EVVAEPLLER-GVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQV 187 (224)
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence 4433211100 0110011112334455555432 11 7889999999999 6999999999
Q ss_pred HHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 127 FPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 127 ~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
+.++++.+++ |.|||++ ||+.+.+..+||++
T Consensus 188 l~~~l~~~~~~g~tii~v------sH~~~~~~~~~d~i 219 (224)
T TIGR02324 188 VVELIAEAKARGAALIGI------FHDEEVRELVADRV 219 (224)
T ss_pred HHHHHHHHHhcCCEEEEE------eCCHHHHHHhccee
Confidence 9999998876 9999999 99998898999983
No 144
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.96 E-value=3.5e-30 Score=206.68 Aligned_cols=157 Identities=12% Similarity=0.129 Sum_probs=114.0
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhccc-----CCCCeEEeceEchh----hccCCceeeEEEeec--CCcccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKA-----SNPSLKVQGFYTGE----IRQGGQRVGFEVVTL--DDRRAPLA 69 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~-----~~G~i~~~g~~~~~----~~~~~~~ig~~~q~~--~~~~~~~~ 69 (193)
|+|++|++++|+||||||||||+++|+|+++| ++|+|.++|.++.. ....++.++|++|++ .+..++.+
T Consensus 25 l~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~ 104 (258)
T PRK14241 25 LNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRD 104 (258)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccccCCCCcHHH
Confidence 57899999999999999999999999999974 69999999987631 123356799999976 23345555
Q ss_pred cccCCCCCCCCCCcccceeeehhhhhhhccc------------ccc------------cCCCCCEEEEecC-CCcccccc
Q 029421 70 SINASSPESYRWPTVGRYKVDVASFEAIALP------------ELQ------------VGADTDLFVIDEV-GKMELFSS 124 (193)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------------~~~------------l~~~p~llllDEp-~~LD~~~~ 124 (193)
++.+..................++++.+++. .++ ++.+|+++||||| ++||+.++
T Consensus 105 nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~ 184 (258)
T PRK14241 105 NVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPIST 184 (258)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHH
Confidence 5433211000001111111223444444441 111 7899999999999 69999999
Q ss_pred chHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 125 SFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 125 ~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
..+.++++.++++.|||++ ||+++++.++||++
T Consensus 185 ~~l~~~l~~~~~~~tviiv------sH~~~~~~~~~d~i 217 (258)
T PRK14241 185 LAIEDLINELKQDYTIVIV------THNMQQAARVSDQT 217 (258)
T ss_pred HHHHHHHHHHhcCCEEEEE------ecCHHHHHHhCCEE
Confidence 9999999988667899999 99999999999984
No 145
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=4.5e-30 Score=204.21 Aligned_cols=152 Identities=15% Similarity=0.236 Sum_probs=114.3
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCC-cccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDD-RRAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~ 77 (193)
|+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++... ...++.++|++|++.. ..+..+++.+....
T Consensus 24 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~ 103 (241)
T PRK14250 24 VKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPML 103 (241)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCchhchhhHHHHHhcchhh
Confidence 57899999999999999999999999999999999999999886421 2234679999998621 13444443322110
Q ss_pred CCCCCcccceeeehhhhhhhccc-cc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh
Q 029421 78 SYRWPTVGRYKVDVASFEAIALP-EL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE 135 (193)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~l~-~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~ 135 (193)
. . .......+.++.+++. .+ + ++.+|+++||||| ++||+.++..+.++++.+.
T Consensus 104 -~--~--~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 178 (241)
T PRK14250 104 -K--G--EKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLK 178 (241)
T ss_pred -c--C--cHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 0 0 0011233455555553 21 1 7899999999999 6999999999999998875
Q ss_pred -C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 136 -S-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 136 -~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
+ |.|||++ |||.+++.++||++
T Consensus 179 ~~~g~tii~~------sH~~~~~~~~~d~i 202 (241)
T PRK14250 179 NKMNLTVIWI------THNMEQAKRIGDYT 202 (241)
T ss_pred HhCCCEEEEE------eccHHHHHHhCCEE
Confidence 3 8999999 99999999999984
No 146
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.9e-30 Score=211.48 Aligned_cols=156 Identities=15% Similarity=0.204 Sum_probs=114.0
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh-------hccCCceeeEEEeecC---Cccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE-------IRQGGQRVGFEVVTLD---DRRAPLAS 70 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~-------~~~~~~~ig~~~q~~~---~~~~~~~~ 70 (193)
|+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.. ....++.++|++|++. ...+..++
T Consensus 32 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~en 111 (289)
T PRK13645 32 LTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKD 111 (289)
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHHHHhccEEEEEeCcchhhhhhHHHHH
Confidence 5789999999999999999999999999999999999999987531 1223467999999852 11244444
Q ss_pred ccCCCCCCCCCCcccceeeehhhhhhhccc-cc--------c------------cCCCCCEEEEecC-CCccccccchHH
Q 029421 71 INASSPESYRWPTVGRYKVDVASFEAIALP-EL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFP 128 (193)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~ 128 (193)
+.+.... .............+.++.+++. .+ + ++.+|++|||||| ++||+.++..+.
T Consensus 112 l~~~~~~-~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~ 190 (289)
T PRK13645 112 IAFGPVN-LGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFI 190 (289)
T ss_pred HHHHHHH-cCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHH
Confidence 4322110 0011111111223455555552 21 1 7899999999999 699999999999
Q ss_pred HHHHHHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 129 AVLRILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 129 ~ll~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
++++.+. + |+|||++ ||+++++.++||++
T Consensus 191 ~~l~~~~~~~~~tiiii------sH~~~~~~~~~d~i 221 (289)
T PRK13645 191 NLFERLNKEYKKRIIMV------THNMDQVLRIADEV 221 (289)
T ss_pred HHHHHHHHhcCCEEEEE------ecCHHHHHHhCCEE
Confidence 9998875 4 8999999 99999999999984
No 147
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.96 E-value=2.1e-30 Score=201.29 Aligned_cols=151 Identities=15% Similarity=0.122 Sum_probs=112.2
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh-ccCCceeeEEEeec--CCcccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI-RQGGQRVGFEVVTL--DDRRAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~-~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~~ 77 (193)
|+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ...++.++|++|++ .+..++.+++.+....
T Consensus 22 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~ 101 (204)
T PRK13538 22 FTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRL 101 (204)
T ss_pred EEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeCCccccCcCCcHHHHHHHHHHh
Confidence 57899999999999999999999999999999999999999886422 22345789998865 2234555554332111
Q ss_pred CCCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHHHhC
Q 029421 78 SYRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILES 136 (193)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~ 136 (193)
. . . .......+.++.+++... + ++.+|+++++||| ++||+.++..+.++++.+++
T Consensus 102 ~-~--~-~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 177 (204)
T PRK13538 102 H-G--P-GDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAE 177 (204)
T ss_pred c-C--c-cHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH
Confidence 0 0 0 111223345565555422 1 8899999999999 69999999999999998865
Q ss_pred -CCcEEEEecCCCCCCChhHHHHHhc
Q 029421 137 -NIPVLASIPAPKSGRDIPAVARLRN 161 (193)
Q Consensus 137 -g~tvl~~~~~~~~tHd~~~~~~~~d 161 (193)
|.|||++ |||..++.++..
T Consensus 178 ~~~tiii~------sh~~~~i~~~~~ 197 (204)
T PRK13538 178 QGGMVILT------THQDLPVASDKV 197 (204)
T ss_pred CCCEEEEE------ecChhhhccCCc
Confidence 8999999 999988876433
No 148
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.96 E-value=8e-30 Score=206.15 Aligned_cols=156 Identities=13% Similarity=0.183 Sum_probs=112.6
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecCC--c--ccccccccCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDD--R--RAPLASINASSP 76 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~--~--~~~~~~~~~~~~ 76 (193)
|+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ..+..++|+||++.. . ....+++.+...
T Consensus 28 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~-~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~ 106 (272)
T PRK15056 28 FTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQA-LQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRY 106 (272)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHh-hccceEEEeccccccccCCCcchhhheecccc
Confidence 57899999999999999999999999999999999999999886421 123469999997521 1 111222211100
Q ss_pred C---CCCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421 77 E---SYRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLR 132 (193)
Q Consensus 77 ~---~~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~ 132 (193)
. ..............+.++.+++... + ++.+|+++||||| ++||+.++..+.++++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~ 186 (272)
T PRK15056 107 GHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLR 186 (272)
T ss_pred cccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence 0 0000001111123345566665432 1 7899999999999 6999999999999999
Q ss_pred HHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 133 ILES-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 133 ~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+++ |.|||++ |||.+++..+||++
T Consensus 187 ~~~~~g~tviiv------sH~~~~~~~~~d~v 212 (272)
T PRK15056 187 ELRDEGKTMLVS------THNLGSVTEFCDYT 212 (272)
T ss_pred HHHhCCCEEEEE------eCCHHHHHHhCCEE
Confidence 8866 9999999 99999999999983
No 149
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.96 E-value=2.4e-30 Score=203.11 Aligned_cols=156 Identities=18% Similarity=0.169 Sum_probs=114.7
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc-----cCCceeeEEEeecC--CcccccccccC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR-----QGGQRVGFEVVTLD--DRRAPLASINA 73 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~-----~~~~~ig~~~q~~~--~~~~~~~~~~~ 73 (193)
|++.+|++++|+||||||||||+++|+|+++|++|+|.++|.++.... ..++.++|++|++. ...+..+++.+
T Consensus 26 ~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~ 105 (220)
T TIGR02982 26 LEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQM 105 (220)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHH
Confidence 578999999999999999999999999999999999999998864321 23467999999862 23455555433
Q ss_pred CCCCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421 74 SSPESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLR 132 (193)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~ 132 (193)
..................+.++.+++.... ++.+|+++||||| ++||+.++..+.++++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~ 185 (220)
T TIGR02982 106 ALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQ 185 (220)
T ss_pred HHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHH
Confidence 211000011111112344566666664321 8899999999999 6999999999999998
Q ss_pred HHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 133 ILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 133 ~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+. + |.|||++ ||+.+. .++||++
T Consensus 186 ~~~~~~~~tii~~------sh~~~~-~~~~d~v 211 (220)
T TIGR02982 186 KLAREQGCTILIV------THDNRI-LDVADRI 211 (220)
T ss_pred HHHHHcCCEEEEE------eCCHHH-HhhCCEE
Confidence 875 3 8999999 999874 5788873
No 150
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=4.1e-30 Score=205.81 Aligned_cols=157 Identities=13% Similarity=0.152 Sum_probs=114.2
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhccc-----CCCCeEEeceEchh----hccCCceeeEEEeecCC-ccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKA-----SNPSLKVQGFYTGE----IRQGGQRVGFEVVTLDD-RRAPLAS 70 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~-----~~G~i~~~g~~~~~----~~~~~~~ig~~~q~~~~-~~~~~~~ 70 (193)
|+|++|++++|+||||||||||+++|+|+++| ++|+|.++|.++.. ....++.++|++|++.. ..+..++
T Consensus 28 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~en 107 (254)
T PRK14273 28 IKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFLMSIYDN 107 (254)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeeccccccCcHHHH
Confidence 67899999999999999999999999999987 48999999987631 12235679999998632 2455555
Q ss_pred ccCCCCCCCCCCcccceeeehhhhhhhccc------------ccc------------cCCCCCEEEEecC-CCccccccc
Q 029421 71 INASSPESYRWPTVGRYKVDVASFEAIALP------------ELQ------------VGADTDLFVIDEV-GKMELFSSS 125 (193)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------------~~~------------l~~~p~llllDEp-~~LD~~~~~ 125 (193)
+.+..................+.++.+++. .++ ++.+|+++||||| ++||+.++.
T Consensus 108 i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~ 187 (254)
T PRK14273 108 ISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTG 187 (254)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHH
Confidence 543221100001001112223344444431 121 7899999999999 699999999
Q ss_pred hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+.++++.++++.|||++ ||+++++..+||++
T Consensus 188 ~l~~~l~~~~~~~tvii~------sH~~~~~~~~~d~i 219 (254)
T PRK14273 188 KIEELIINLKESYTIIIV------THNMQQAGRISDRT 219 (254)
T ss_pred HHHHHHHHHhcCCEEEEE------eCCHHHHHHhCCEE
Confidence 999999988668999999 99999999999984
No 151
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=3.1e-30 Score=204.36 Aligned_cols=156 Identities=13% Similarity=0.228 Sum_probs=116.7
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecC--CcccccccccCCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD--DRRAPLASINASSPES 78 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~~~ 78 (193)
|+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++......++.++|++|++. +..+..+++.+.....
T Consensus 20 ~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~ 99 (235)
T cd03299 20 LEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKR 99 (235)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHHHHHHHc
Confidence 57899999999999999999999999999999999999999887543333567999999862 2345555543321110
Q ss_pred CCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh-C
Q 029421 79 YRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE-S 136 (193)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~-~ 136 (193)
............+.++.+++... + ++.+|+++++||| ++||+.++..+.++++.+. +
T Consensus 100 -~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~ 178 (235)
T cd03299 100 -KVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKE 178 (235)
T ss_pred -CCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHh
Confidence 00011111123345556665422 1 8899999999999 6999999999999998875 3
Q ss_pred -CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 137 -NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 137 -g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
|.|+|++ ||+++++..+||++
T Consensus 179 ~~~tili~------tH~~~~~~~~~d~i 200 (235)
T cd03299 179 FGVTVLHV------THDFEEAWALADKV 200 (235)
T ss_pred cCCEEEEE------ecCHHHHHHhCCEE
Confidence 8999999 99999999999984
No 152
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.96 E-value=3.9e-30 Score=205.79 Aligned_cols=157 Identities=12% Similarity=0.167 Sum_probs=112.5
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcc-----cCCCCeEEeceEchh----hccCCceeeEEEeecCC-ccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLK-----ASNPSLKVQGFYTGE----IRQGGQRVGFEVVTLDD-RRAPLAS 70 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~-----~~~G~i~~~g~~~~~----~~~~~~~ig~~~q~~~~-~~~~~~~ 70 (193)
|+|++|++++|+||||||||||+++|+|+++ |++|+|.++|+++.. ....++.++|++|++.. ..++.++
T Consensus 27 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~en 106 (253)
T PRK14242 27 LEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFPKSIFEN 106 (253)
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCCCcCcHHHH
Confidence 5789999999999999999999999999974 589999999987632 11234679999998621 1355555
Q ss_pred ccCCCCCCCCCCcccceeeehhhhhhhccc------------ccc------------cCCCCCEEEEecC-CCccccccc
Q 029421 71 INASSPESYRWPTVGRYKVDVASFEAIALP------------ELQ------------VGADTDLFVIDEV-GKMELFSSS 125 (193)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------------~~~------------l~~~p~llllDEp-~~LD~~~~~ 125 (193)
+.+..................+.++.+++. .++ ++.+|+++||||| ++||+.++.
T Consensus 107 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~ 186 (253)
T PRK14242 107 VAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQ 186 (253)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 433211000000000111222334444431 121 7899999999999 699999999
Q ss_pred hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+.++++.++++.|||++ |||++++.++||++
T Consensus 187 ~l~~~l~~~~~~~tvii~------tH~~~~~~~~~d~v 218 (253)
T PRK14242 187 KIEELIHELKARYTIIIV------THNMQQAARVSDVT 218 (253)
T ss_pred HHHHHHHHHhcCCeEEEE------EecHHHHHHhCCEE
Confidence 999999988668999999 99999999999984
No 153
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.96 E-value=2e-29 Score=200.97 Aligned_cols=141 Identities=15% Similarity=0.268 Sum_probs=105.9
Q ss_pred cccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecC--CcccccccccCCCCCCC
Q 029421 2 AAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD--DRRAPLASINASSPESY 79 (193)
Q Consensus 2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~~~~ 79 (193)
+|++|++++|+||||||||||+++|+|+++|++|+|.++|. .++|++|++. ...++.+++........
T Consensus 21 ~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~----------~i~~~~q~~~~~~~~tv~e~l~~~~~~~~ 90 (246)
T cd03237 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD----------TVSYKPQYIKADYEGTVRDLLSSITKDFY 90 (246)
T ss_pred CcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc----------eEEEecccccCCCCCCHHHHHHHHhhhcc
Confidence 57789999999999999999999999999999999999873 5889998763 22344444322110000
Q ss_pred CCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh-C-
Q 029421 80 RWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE-S- 136 (193)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~-~- 136 (193)
. ......++++.+++... + ++.+|+++||||| ++||+.++..+.++++.+. +
T Consensus 91 --~---~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~ 165 (246)
T cd03237 91 --T---HPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENN 165 (246)
T ss_pred --c---cHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc
Confidence 0 00112334444444321 1 8899999999999 6999999999999999875 3
Q ss_pred CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 137 NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 137 g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
|+|||++ |||++.+..+||++
T Consensus 166 ~~tiiiv------sHd~~~~~~~~d~i 186 (246)
T cd03237 166 EKTAFVV------EHDIIMIDYLADRL 186 (246)
T ss_pred CCEEEEE------eCCHHHHHHhCCEE
Confidence 8999999 99999999999984
No 154
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=7.1e-30 Score=203.96 Aligned_cols=157 Identities=11% Similarity=0.091 Sum_probs=116.1
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhccc-----CCCCeEEeceEchh--hccCCceeeEEEeec--CCcccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKA-----SNPSLKVQGFYTGE--IRQGGQRVGFEVVTL--DDRRAPLASI 71 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~-----~~G~i~~~g~~~~~--~~~~~~~ig~~~q~~--~~~~~~~~~~ 71 (193)
|+|++|++++|+||||||||||+++|+|+++| ++|+|.++|.++.. ....++.+||+||++ ....++.+++
T Consensus 24 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl 103 (250)
T PRK14247 24 LEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENV 103 (250)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCCCCcHHHHH
Confidence 67899999999999999999999999999974 79999999988642 123356799999986 2335666665
Q ss_pred cCCCCCCCCC-Ccccceeeehhhhhhhcccc------------cc------------cCCCCCEEEEecC-CCccccccc
Q 029421 72 NASSPESYRW-PTVGRYKVDVASFEAIALPE------------LQ------------VGADTDLFVIDEV-GKMELFSSS 125 (193)
Q Consensus 72 ~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~------------~~------------l~~~p~llllDEp-~~LD~~~~~ 125 (193)
.+........ ..........+.++.+++.. ++ ++.+|++++|||| ++||+.++.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~ 183 (250)
T PRK14247 104 ALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTA 183 (250)
T ss_pred HHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHH
Confidence 4322100000 00111122334555555421 11 7899999999999 699999999
Q ss_pred hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+.++++.+.+|.|+|++ ||+++++..+||++
T Consensus 184 ~l~~~l~~~~~~~tiii~------sH~~~~~~~~~d~i 215 (250)
T PRK14247 184 KIESLFLELKKDMTIVLV------THFPQQAARISDYV 215 (250)
T ss_pred HHHHHHHHHhcCCEEEEE------eCCHHHHHHhcCEE
Confidence 999999988668999999 99999999999984
No 155
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.96 E-value=1.2e-29 Score=204.10 Aligned_cols=157 Identities=15% Similarity=0.252 Sum_probs=116.3
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccC---CCCeEEeceEchhh-------ccCCceeeEEEeec--CCccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKAS---NPSLKVQGFYTGEI-------RQGGQRVGFEVVTL--DDRRAPL 68 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~---~G~i~~~g~~~~~~-------~~~~~~ig~~~q~~--~~~~~~~ 68 (193)
|++.+|++++|+||||||||||+++|+|+++|+ +|+|.++|.++... ...++.++|+||++ .+..+..
T Consensus 25 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 104 (262)
T PRK09984 25 LNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVL 104 (262)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccccccccCCcHH
Confidence 578999999999999999999999999999986 49999999876321 12245799999986 2334555
Q ss_pred ccccCCCCCCC-------CCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCcc
Q 029421 69 ASINASSPESY-------RWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKME 120 (193)
Q Consensus 69 ~~~~~~~~~~~-------~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD 120 (193)
+++.+...... .+..........+.++.+++.... ++.+|+++||||| ++||
T Consensus 105 e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 184 (262)
T PRK09984 105 ENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLD 184 (262)
T ss_pred HHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHHHHhcCCCEEEecCccccCC
Confidence 55543221000 000111112344566666664321 7899999999999 6999
Q ss_pred ccccchHHHHHHHHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 121 LFSSSFFPAVLRILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 121 ~~~~~~~~~ll~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
+.++..+.++++.++ + |.|||++ |||.+++..+||++
T Consensus 185 ~~~~~~l~~~l~~~~~~~g~tvii~------tH~~~~~~~~~d~i 223 (262)
T PRK09984 185 PESARIVMDTLRDINQNDGITVVVT------LHQVDYALRYCERI 223 (262)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEE------eCCHHHHHHhCCEE
Confidence 999999999999885 4 8999999 99999999999984
No 156
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=7.9e-30 Score=203.94 Aligned_cols=157 Identities=15% Similarity=0.187 Sum_probs=114.3
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcc--c---CCCCeEEeceEchh----hccCCceeeEEEeecC--Ccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLK--A---SNPSLKVQGFYTGE----IRQGGQRVGFEVVTLD--DRRAPLA 69 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~--~---~~G~i~~~g~~~~~----~~~~~~~ig~~~q~~~--~~~~~~~ 69 (193)
|+|++|++++|+||||||||||+++|+|+++ | ++|+|.++|.++.. ....++.++|+||++. ...+..+
T Consensus 25 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 104 (252)
T PRK14256 25 MDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYD 104 (252)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCCCCcCcHHH
Confidence 5789999999999999999999999999986 4 68999999988642 1233567999999862 2345555
Q ss_pred cccCCCCCCCCCCcccceeeehhhhhhhccc------------ccc------------cCCCCCEEEEecC-CCcccccc
Q 029421 70 SINASSPESYRWPTVGRYKVDVASFEAIALP------------ELQ------------VGADTDLFVIDEV-GKMELFSS 124 (193)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------------~~~------------l~~~p~llllDEp-~~LD~~~~ 124 (193)
++.+..................+.++.+++. .++ ++.+|+++||||| ++||+.++
T Consensus 105 nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~ 184 (252)
T PRK14256 105 NVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPIST 184 (252)
T ss_pred HHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 5433211100000111111223444444442 122 7899999999999 69999999
Q ss_pred chHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 125 SFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 125 ~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
..+.++++.+.++.|||++ ||+++++.++||++
T Consensus 185 ~~l~~~l~~~~~~~tiiiv------sH~~~~~~~~~d~i 217 (252)
T PRK14256 185 LKIEELIEELKEKYTIIIV------THNMQQAARVSDYT 217 (252)
T ss_pred HHHHHHHHHHHhCCcEEEE------ECCHHHHHhhCCEE
Confidence 9999999988767899999 99999999999984
No 157
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=8.2e-30 Score=222.14 Aligned_cols=157 Identities=13% Similarity=0.140 Sum_probs=119.0
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhccc--CCCCeEEeceEchhhc---cCCceeeEEEeec--CCcccccccccC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKA--SNPSLKVQGFYTGEIR---QGGQRVGFEVVTL--DDRRAPLASINA 73 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~--~~G~i~~~g~~~~~~~---~~~~~ig~~~q~~--~~~~~~~~~~~~ 73 (193)
|+|++|++++|+||||||||||+|+|+|+++| ++|+|.++|.++.... ..++.+||+||++ .+..++.+++.+
T Consensus 26 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~ 105 (506)
T PRK13549 26 LKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKELSVLENIFL 105 (506)
T ss_pred EEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhh
Confidence 67899999999999999999999999999996 8999999998864221 1245699999986 234566666544
Q ss_pred CCCCCC-C-CCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHH
Q 029421 74 SSPESY-R-WPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAV 130 (193)
Q Consensus 74 ~~~~~~-~-~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~l 130 (193)
...... . ...........++++.+++.... ++.+|+++||||| ++||+.++..+.++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~ 185 (506)
T PRK13549 106 GNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDI 185 (506)
T ss_pred cccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Confidence 321110 0 11111112345667777765321 8899999999999 69999999999999
Q ss_pred HHHHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 131 LRILES-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 131 l~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
+..+++ |.|||++ |||++.+..+||++
T Consensus 186 l~~l~~~~~tvi~~------tH~~~~~~~~~d~v 213 (506)
T PRK13549 186 IRDLKAHGIACIYI------SHKLNEVKAISDTI 213 (506)
T ss_pred HHHHHHCCCEEEEE------eCcHHHHHHhcCEE
Confidence 998865 8999999 99999999999983
No 158
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.96 E-value=1.5e-29 Score=191.70 Aligned_cols=138 Identities=14% Similarity=0.247 Sum_probs=104.7
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCC-cccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDD-RRAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~ 77 (193)
|++++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ...++.++|++|++.. ..+..+++
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~l------ 96 (173)
T cd03246 23 FSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENI------ 96 (173)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHC------
Confidence 57899999999999999999999999999999999999999876422 2234679999987521 11222221
Q ss_pred CCCCCcccceeeehhhhhhhcccccccCCCCCEEEEecC-CCccccccchHHHHHHHHhC-CCcEEEEecCCCCCCChhH
Q 029421 78 SYRWPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEV-GKMELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIPA 155 (193)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~ 155 (193)
.. .-..+++.+. ..++.+|+++||||| ++||+.++..+.++++.+++ |.|||++ |||.+.
T Consensus 97 ---LS--------~G~~qrv~la-~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~------sh~~~~ 158 (173)
T cd03246 97 ---LS--------GGQRQRLGLA-RALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVI------AHRPET 158 (173)
T ss_pred ---cC--------HHHHHHHHHH-HHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEE------eCCHHH
Confidence 00 0011122221 236889999999999 69999999999999998866 9999999 999987
Q ss_pred HHHHhcCC
Q 029421 156 VARLRNHP 163 (193)
Q Consensus 156 ~~~~~d~~ 163 (193)
+ .+||++
T Consensus 159 ~-~~~d~v 165 (173)
T cd03246 159 L-ASADRI 165 (173)
T ss_pred H-HhCCEE
Confidence 7 478873
No 159
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.96 E-value=8.7e-30 Score=222.17 Aligned_cols=157 Identities=11% Similarity=0.141 Sum_probs=118.9
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc---cCCceeeEEEeec--CCcccccccccCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR---QGGQRVGFEVVTL--DDRRAPLASINASS 75 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~---~~~~~ig~~~q~~--~~~~~~~~~~~~~~ 75 (193)
|+|++|++++|+||||||||||+|+|+|+++|++|+|.++|.++.... ..++.++|++|++ .+..++.+++.+..
T Consensus 26 ~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~ 105 (510)
T PRK09700 26 LTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGR 105 (510)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhcc
Confidence 678999999999999999999999999999999999999998864221 1234699999986 23345556554322
Q ss_pred CCC---CCC---Ccccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHH
Q 029421 76 PES---YRW---PTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFP 128 (193)
Q Consensus 76 ~~~---~~~---~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~ 128 (193)
... ... ..........+.++.+++.... ++.+|+++||||| ++||+.++..+.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~ 185 (510)
T PRK09700 106 HLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLF 185 (510)
T ss_pred ccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH
Confidence 100 010 0001112344566777765321 8899999999999 699999999999
Q ss_pred HHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 129 AVLRILES-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 129 ~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
++++.+++ |.|||++ |||++++..+||++
T Consensus 186 ~~l~~l~~~g~tiiiv------sHd~~~~~~~~d~v 215 (510)
T PRK09700 186 LIMNQLRKEGTAIVYI------SHKLAEIRRICDRY 215 (510)
T ss_pred HHHHHHHhCCCEEEEE------eCCHHHHHHhCCEE
Confidence 99999876 9999999 99999999999984
No 160
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.96 E-value=8.2e-30 Score=204.81 Aligned_cols=157 Identities=14% Similarity=0.154 Sum_probs=113.8
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcc-----cCCCCeEEeceEchh----hccCCceeeEEEeecCC-ccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLK-----ASNPSLKVQGFYTGE----IRQGGQRVGFEVVTLDD-RRAPLAS 70 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~-----~~~G~i~~~g~~~~~----~~~~~~~ig~~~q~~~~-~~~~~~~ 70 (193)
|+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++.. ....+++++|+||++.. ..+..++
T Consensus 34 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~n 113 (260)
T PRK10744 34 LDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSIYDN 113 (260)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccCcCcHHHH
Confidence 5789999999999999999999999999986 589999999988632 12235679999998621 1355555
Q ss_pred ccCCCCCCCCCCcccceeeehhhhhhhccc------------ccc------------cCCCCCEEEEecC-CCccccccc
Q 029421 71 INASSPESYRWPTVGRYKVDVASFEAIALP------------ELQ------------VGADTDLFVIDEV-GKMELFSSS 125 (193)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------------~~~------------l~~~p~llllDEp-~~LD~~~~~ 125 (193)
+.+..................+.++.+++. .++ ++.+|+++||||| ++||+.++.
T Consensus 114 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~ 193 (260)
T PRK10744 114 IAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTG 193 (260)
T ss_pred HhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHH
Confidence 433211000111111111233444444431 121 8899999999999 699999999
Q ss_pred hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+.++++.++++.|||++ ||+++.+..+||++
T Consensus 194 ~l~~~L~~~~~~~tiii~------sH~~~~~~~~~d~i 225 (260)
T PRK10744 194 RIEELITELKQDYTVVIV------THNMQQAARCSDYT 225 (260)
T ss_pred HHHHHHHHHhcCCeEEEE------eCCHHHHHHhCCEE
Confidence 999999988668899999 99999999999984
No 161
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.96 E-value=2.7e-29 Score=185.64 Aligned_cols=154 Identities=17% Similarity=0.218 Sum_probs=123.0
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh------ccCCceeeEEEeec--CCccccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI------RQGGQRVGFEVVTL--DDRRAPLASIN 72 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~------~~~~~~ig~~~q~~--~~~~~~~~~~~ 72 (193)
|.|++||.++|+||||||||||+-+++|+..|++|+|++.|++.... ....+++||+||.+ .+.++.++|..
T Consensus 31 L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~ 110 (228)
T COG4181 31 LVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVA 110 (228)
T ss_pred EEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhcc
Confidence 46899999999999999999999999999999999999999986432 23467899999987 56778888877
Q ss_pred CCCCCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421 73 ASSPESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVL 131 (193)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll 131 (193)
++...... ...+......+.++++|+.... ++..|++|+.||| ++||...-..+.+++
T Consensus 111 lPleL~ge-~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLl 189 (228)
T COG4181 111 LPLELRGE-SSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLL 189 (228)
T ss_pred chhhhcCC-ccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHH
Confidence 76543221 2223334466788888876432 8899999999999 599999988888888
Q ss_pred HHHh-C-CCcEEEEecCCCCCCChhHHHHHhcC
Q 029421 132 RILE-S-NIPVLASIPAPKSGRDIPAVARLRNH 162 (193)
Q Consensus 132 ~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~ 162 (193)
-.+. + |.|+++| |||...+. -|+|
T Consensus 190 F~lnre~G~TlVlV------THD~~LA~-Rc~R 215 (228)
T COG4181 190 FALNRERGTTLVLV------THDPQLAA-RCDR 215 (228)
T ss_pred HHHhhhcCceEEEE------eCCHHHHH-hhhh
Confidence 8775 4 9999999 99976555 5777
No 162
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=4.7e-30 Score=208.33 Aligned_cols=155 Identities=13% Similarity=0.179 Sum_probs=114.1
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh---ccCCceeeEEEeecCC---cccccccccCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI---RQGGQRVGFEVVTLDD---RRAPLASINAS 74 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~---~~~~~~ig~~~q~~~~---~~~~~~~~~~~ 74 (193)
|+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ...++.+||+||++.. ..++.+++.+.
T Consensus 31 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~ 110 (280)
T PRK13633 31 LEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFG 110 (280)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhhheEEEecChhhhhccccHHHHHHhh
Confidence 57899999999999999999999999999999999999999886431 2335679999998621 12333333322
Q ss_pred CCCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHH
Q 029421 75 SPESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRI 133 (193)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~ 133 (193)
... .............++++.+++.... ++.+|+++||||| +|||+.++..+.++++.
T Consensus 111 ~~~-~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~ 189 (280)
T PRK13633 111 PEN-LGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKE 189 (280)
T ss_pred Hhh-cCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 110 0111111112234556666654321 8899999999999 69999999999999998
Q ss_pred Hh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 134 LE-S-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 134 l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
++ + |.|||++ ||+++.+.. ||++
T Consensus 190 l~~~~g~tillv------tH~~~~~~~-~d~v 214 (280)
T PRK13633 190 LNKKYGITIILI------THYMEEAVE-ADRI 214 (280)
T ss_pred HHHhcCCEEEEE------ecChHHHhc-CCEE
Confidence 85 4 8999999 999998875 8884
No 163
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.96 E-value=2.2e-29 Score=189.11 Aligned_cols=127 Identities=16% Similarity=0.230 Sum_probs=102.2
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh---ccCCceeeEEEeecCCcccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI---RQGGQRVGFEVVTLDDRRAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~---~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~ 77 (193)
|++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...++.++|++| +
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q-------------L---- 83 (163)
T cd03216 21 LSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQ-------------L---- 83 (163)
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEe-------------c----
Confidence 57899999999999999999999999999999999999999886432 123456889887 0
Q ss_pred CCCCCcccceeeehhhhhhhcccccccCCCCCEEEEecC-CCccccccchHHHHHHHHhC-CCcEEEEecCCCCCCChhH
Q 029421 78 SYRWPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEV-GKMELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIPA 155 (193)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~ 155 (193)
.. + ..+++.+. ..++.+|+++|+||| ++||+.++..+.++++.+++ |.|+|++ |||.++
T Consensus 84 S~-----G-------~~qrl~la-ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~------sh~~~~ 144 (163)
T cd03216 84 SV-----G-------ERQMVEIA-RALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFI------SHRLDE 144 (163)
T ss_pred CH-----H-------HHHHHHHH-HHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEE------eCCHHH
Confidence 00 0 01111111 126789999999999 69999999999999998865 8999999 999999
Q ss_pred HHHHhcCC
Q 029421 156 VARLRNHP 163 (193)
Q Consensus 156 ~~~~~d~~ 163 (193)
+.++||++
T Consensus 145 ~~~~~d~~ 152 (163)
T cd03216 145 VFEIADRV 152 (163)
T ss_pred HHHhCCEE
Confidence 99999983
No 164
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.5e-29 Score=220.67 Aligned_cols=157 Identities=13% Similarity=0.158 Sum_probs=118.2
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh---ccCCceeeEEEeec-----CCccccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI---RQGGQRVGFEVVTL-----DDRRAPLASIN 72 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~---~~~~~~ig~~~q~~-----~~~~~~~~~~~ 72 (193)
|+|++|++++|+||||||||||+|+|+|+++|++|+|.++|.++... ...++++||+||++ .+..++.+++.
T Consensus 284 l~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~ 363 (510)
T PRK09700 284 FSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMA 363 (510)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhc
Confidence 67899999999999999999999999999999999999999876321 12235799999963 23345666654
Q ss_pred CCCCCC---C----CC-Ccccceeeehhhhhhhccc-ccc--------------------cCCCCCEEEEecC-CCcccc
Q 029421 73 ASSPES---Y----RW-PTVGRYKVDVASFEAIALP-ELQ--------------------VGADTDLFVIDEV-GKMELF 122 (193)
Q Consensus 73 ~~~~~~---~----~~-~~~~~~~~~~~~l~~~~l~-~~~--------------------l~~~p~llllDEp-~~LD~~ 122 (193)
+..... . .. ..........++++.+++. +.. ++.+|++|||||| ++||+.
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~ 443 (510)
T PRK09700 364 ISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVG 443 (510)
T ss_pred cccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHH
Confidence 322100 0 00 0111112234667777774 321 7899999999999 699999
Q ss_pred ccchHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 123 SSSFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 123 ~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
++..+.++++.+++ |.|||++ |||++++..+||++
T Consensus 444 ~~~~l~~~l~~l~~~g~tvi~v------sHd~~~~~~~~d~i 479 (510)
T PRK09700 444 AKAEIYKVMRQLADDGKVILMV------SSELPEIITVCDRI 479 (510)
T ss_pred HHHHHHHHHHHHHHCCCEEEEE------cCCHHHHHhhCCEE
Confidence 99999999998866 9999999 99999999999983
No 165
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=4.9e-30 Score=207.29 Aligned_cols=155 Identities=12% Similarity=0.170 Sum_probs=114.9
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeec---CCcccccccccCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTL---DDRRAPLASINASS 75 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~---~~~~~~~~~~~~~~ 75 (193)
|++++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ...++.++|++|++ ....++.+++.+..
T Consensus 30 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~ 109 (271)
T PRK13632 30 FEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGL 109 (271)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHH
Confidence 57899999999999999999999999999999999999999887422 23356799999985 22345666654321
Q ss_pred CCCCCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHHH
Q 029421 76 PESYRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRIL 134 (193)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l 134 (193)
.. .............+.++.+++... + ++.+|+++||||| ++||+.++..+.++++.+
T Consensus 110 ~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~ 188 (271)
T PRK13632 110 EN-KKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDL 188 (271)
T ss_pred HH-cCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 10 001111111223445566665422 1 8899999999999 699999999999999987
Q ss_pred hC--CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 135 ES--NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 135 ~~--g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
++ +.|||++ ||+.+.+. .||++
T Consensus 189 ~~~~~~tiii~------sH~~~~~~-~~d~v 212 (271)
T PRK13632 189 RKTRKKTLISI------THDMDEAI-LADKV 212 (271)
T ss_pred HHhcCcEEEEE------EechhHHh-hCCEE
Confidence 64 5899999 99998885 78884
No 166
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.1e-29 Score=220.60 Aligned_cols=157 Identities=12% Similarity=0.146 Sum_probs=118.1
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh---ccCCceeeEEEeecC--CcccccccccCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI---RQGGQRVGFEVVTLD--DRRAPLASINASS 75 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~---~~~~~~ig~~~q~~~--~~~~~~~~~~~~~ 75 (193)
|++++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ...++.++|+||++. ...++.+++.+..
T Consensus 19 ~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~ 98 (491)
T PRK10982 19 LKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVMDNMWLGR 98 (491)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCCHHHHhhccc
Confidence 57899999999999999999999999999999999999999886321 122457999999862 3345566554322
Q ss_pred CCCCCC--Ccccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421 76 PESYRW--PTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLR 132 (193)
Q Consensus 76 ~~~~~~--~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~ 132 (193)
...... ..........+.++.+++... + ++.+|++|||||| ++||+.++..+.++++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~ 178 (491)
T PRK10982 99 YPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIR 178 (491)
T ss_pred ccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 111010 111111233455666666432 1 8899999999999 6999999999999999
Q ss_pred HHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 133 ILES-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 133 ~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+++ |.|||++ |||++++..+||++
T Consensus 179 ~l~~~g~tvii~------tH~~~~~~~~~d~i 204 (491)
T PRK10982 179 KLKERGCGIVYI------SHKMEEIFQLCDEI 204 (491)
T ss_pred HHHhCCCEEEEE------ecCHHHHHHhCCEE
Confidence 8866 9999999 99999999999984
No 167
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=7.3e-30 Score=204.20 Aligned_cols=157 Identities=13% Similarity=0.136 Sum_probs=113.4
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhccc-----CCCCeEEeceEch--h--hccCCceeeEEEeecC--Ccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKA-----SNPSLKVQGFYTG--E--IRQGGQRVGFEVVTLD--DRRAPLA 69 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~-----~~G~i~~~g~~~~--~--~~~~~~~ig~~~q~~~--~~~~~~~ 69 (193)
|+|.+|++++|+||||||||||+++|+|+++| ++|+|.++|.++. . ....++.++|++|++. +..+..+
T Consensus 25 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 104 (253)
T PRK14267 25 LKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYD 104 (253)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCccCCCCcHHH
Confidence 57899999999999999999999999999987 4999999998864 1 1123457999999862 2345555
Q ss_pred cccCCCCCCC-CCCcccceeeehhhhhhhccc------------ccc------------cCCCCCEEEEecC-CCccccc
Q 029421 70 SINASSPESY-RWPTVGRYKVDVASFEAIALP------------ELQ------------VGADTDLFVIDEV-GKMELFS 123 (193)
Q Consensus 70 ~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~------------~~~------------l~~~p~llllDEp-~~LD~~~ 123 (193)
++.+...... ............+.++.+++. .++ ++.+|+++|+||| ++||+.+
T Consensus 105 nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~ 184 (253)
T PRK14267 105 NVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVG 184 (253)
T ss_pred HHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHH
Confidence 5433211000 000000111123344444431 111 7899999999999 6999999
Q ss_pred cchHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 124 SSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 124 ~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
+..+.++++.+.++.|||++ ||+++++..+||++
T Consensus 185 ~~~l~~~l~~~~~~~tiii~------sH~~~~~~~~~d~i 218 (253)
T PRK14267 185 TAKIEELLFELKKEYTIVLV------THSPAQAARVSDYV 218 (253)
T ss_pred HHHHHHHHHHHhhCCEEEEE------ECCHHHHHhhCCEE
Confidence 99999999988668899999 99999999999984
No 168
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.96 E-value=7.1e-30 Score=202.97 Aligned_cols=157 Identities=11% Similarity=0.141 Sum_probs=110.5
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhc--ccCCCCeEEeceEchhhc--c-CCceeeEEEeecC--CcccccccccC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESL--KASNPSLKVQGFYTGEIR--Q-GGQRVGFEVVTLD--DRRAPLASINA 73 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~--~~~~G~i~~~g~~~~~~~--~-~~~~ig~~~q~~~--~~~~~~~~~~~ 73 (193)
|+|++|++++|+||||||||||+++|+|++ +|++|+|.++|.++.... . .+..++|++|++. +..+..+++.+
T Consensus 21 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~ 100 (243)
T TIGR01978 21 LTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRS 100 (243)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCCcCHHHHHHH
Confidence 678999999999999999999999999995 799999999998764321 1 2345899999863 22333333222
Q ss_pred CCCCCCC------CCcccceeeehhhhhhhccc----------ccc------------cCCCCCEEEEecC-CCcccccc
Q 029421 74 SSPESYR------WPTVGRYKVDVASFEAIALP----------ELQ------------VGADTDLFVIDEV-GKMELFSS 124 (193)
Q Consensus 74 ~~~~~~~------~~~~~~~~~~~~~l~~~~l~----------~~~------------l~~~p~llllDEp-~~LD~~~~ 124 (193)
....... ...........+.++.+++. .++ ++.+|+++||||| ++||+.++
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~ 180 (243)
T TIGR01978 101 ALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDAL 180 (243)
T ss_pred HHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHH
Confidence 1100000 00000011122333433332 122 7899999999999 69999999
Q ss_pred chHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHH-hcCC
Q 029421 125 SFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARL-RNHP 163 (193)
Q Consensus 125 ~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~-~d~~ 163 (193)
..+.++++.+++ |.|||++ |||++.+..+ ||++
T Consensus 181 ~~l~~~l~~~~~~~~tvi~v------sH~~~~~~~~~~d~i 215 (243)
T TIGR01978 181 KIVAEGINRLREPDRSFLII------THYQRLLNYIKPDYV 215 (243)
T ss_pred HHHHHHHHHHHHCCcEEEEE------EecHHHHHhhcCCeE
Confidence 999999998875 8999999 9999999888 7884
No 169
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.96 E-value=1.3e-29 Score=221.08 Aligned_cols=152 Identities=13% Similarity=0.158 Sum_probs=116.9
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc---cCCceeeEEEeec--CCcccccccccCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR---QGGQRVGFEVVTL--DDRRAPLASINASS 75 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~---~~~~~ig~~~q~~--~~~~~~~~~~~~~~ 75 (193)
|+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.... ..+..+||++|++ .+..++.+++.+..
T Consensus 32 l~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~ 111 (510)
T PRK15439 32 FTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGL 111 (510)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhccc
Confidence 578999999999999999999999999999999999999998763211 1234699999986 23345555544322
Q ss_pred CCCCCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHHH
Q 029421 76 PESYRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRIL 134 (193)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l 134 (193)
.. .........+.++.+++... + ++.+|++|||||| ++||+.++..+.++++.+
T Consensus 112 ~~-----~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 186 (510)
T PRK15439 112 PK-----RQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIREL 186 (510)
T ss_pred cc-----chHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 10 00111223455666666432 1 7899999999999 699999999999999988
Q ss_pred hC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 135 ES-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 135 ~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
++ |.|||++ |||++++..+||++
T Consensus 187 ~~~g~tiiiv------tHd~~~~~~~~d~i 210 (510)
T PRK15439 187 LAQGVGIVFI------SHKLPEIRQLADRI 210 (510)
T ss_pred HHCCCEEEEE------eCCHHHHHHhCCEE
Confidence 66 9999999 99999999999984
No 170
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.96 E-value=7.2e-30 Score=201.11 Aligned_cols=156 Identities=17% Similarity=0.163 Sum_probs=113.9
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcc---cCCCCeEEeceEchhhccCCceeeEEEeec--CCcccccccccCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLK---ASNPSLKVQGFYTGEIRQGGQRVGFEVVTL--DDRRAPLASINASS 75 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~---~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~ 75 (193)
|+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++.. ...++.++|++|++ .+..++.+++.+..
T Consensus 28 l~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~-~~~~~~i~~~~q~~~~~~~~tv~enl~~~~ 106 (226)
T cd03234 28 LHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKP-DQFQKCVAYVRQDDILLPGLTVRETLTYTA 106 (226)
T ss_pred EEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECCh-HHhcccEEEeCCCCccCcCCcHHHHHHHHH
Confidence 5789999999999999999999999999999 999999999987642 23456799999976 23345556554321
Q ss_pred CCCC-CC-Ccccceeeehh-hhhhhcccc--------cc------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421 76 PESY-RW-PTVGRYKVDVA-SFEAIALPE--------LQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVL 131 (193)
Q Consensus 76 ~~~~-~~-~~~~~~~~~~~-~l~~~~l~~--------~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll 131 (193)
.... .. ..........+ .++.+++.. ++ ++.+|+++|+||| ++||+.++..+.+++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l 186 (226)
T cd03234 107 ILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTL 186 (226)
T ss_pred HhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHH
Confidence 1000 00 00000011112 444444332 11 7889999999999 699999999999999
Q ss_pred HHHhC-CCcEEEEecCCCCCCCh-hHHHHHhcCC
Q 029421 132 RILES-NIPVLASIPAPKSGRDI-PAVARLRNHP 163 (193)
Q Consensus 132 ~~l~~-g~tvl~~~~~~~~tHd~-~~~~~~~d~~ 163 (193)
+.+.+ |.|+|++ ||+. .++.++||++
T Consensus 187 ~~~~~~~~tiii~------sh~~~~~~~~~~d~i 214 (226)
T cd03234 187 SQLARRNRIVILT------IHQPRSDLFRLFDRI 214 (226)
T ss_pred HHHHHCCCEEEEE------ecCCCHHHHHhCCEE
Confidence 98865 8999999 9998 5889999984
No 171
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=2.1e-29 Score=190.53 Aligned_cols=138 Identities=14% Similarity=0.241 Sum_probs=104.2
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCC-cccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDD-RRAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~ 77 (193)
|++++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ...++.++|++|++.. ..+..+++
T Consensus 23 ~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~l------ 96 (171)
T cd03228 23 LTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI------ 96 (171)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHh------
Confidence 57899999999999999999999999999999999999999876422 2234578999987521 11222221
Q ss_pred CCCCCcccceeeehhhhhhhcccccccCCCCCEEEEecC-CCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChhHH
Q 029421 78 SYRWPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEV-GKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAV 156 (193)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~ 156 (193)
.. .-..+++.+. ..++.+|+++||||| ++||+.++..+.++++.+.++.|+|++ ||+.+++
T Consensus 97 ---LS--------~G~~~rl~la-~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~------sh~~~~~ 158 (171)
T cd03228 97 ---LS--------GGQRQRIAIA-RALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVI------AHRLSTI 158 (171)
T ss_pred ---hC--------HHHHHHHHHH-HHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEE------ecCHHHH
Confidence 00 0011122221 126789999999999 699999999999999988668999999 9999988
Q ss_pred HHHhcCC
Q 029421 157 ARLRNHP 163 (193)
Q Consensus 157 ~~~~d~~ 163 (193)
.. ||++
T Consensus 159 ~~-~d~~ 164 (171)
T cd03228 159 RD-ADRI 164 (171)
T ss_pred Hh-CCEE
Confidence 76 8873
No 172
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=6.4e-30 Score=205.20 Aligned_cols=156 Identities=14% Similarity=0.148 Sum_probs=113.4
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhccc-----CCCCeEEeceEchhh----ccCCceeeEEEeecCC-ccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKA-----SNPSLKVQGFYTGEI----RQGGQRVGFEVVTLDD-RRAPLAS 70 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~-----~~G~i~~~g~~~~~~----~~~~~~ig~~~q~~~~-~~~~~~~ 70 (193)
|+|++|++++|+||||||||||+++|+|+++| ++|+|.++|.++... ...++.++|++|++.. ..+..++
T Consensus 33 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~en 112 (258)
T PRK14268 33 MQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDN 112 (258)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCccCcccHHHH
Confidence 57899999999999999999999999999985 799999999876321 1234679999997621 1455555
Q ss_pred ccCCCCCCCCCCcccceeeehhhhhhhccc------------ccc------------cCCCCCEEEEecC-CCccccccc
Q 029421 71 INASSPESYRWPTVGRYKVDVASFEAIALP------------ELQ------------VGADTDLFVIDEV-GKMELFSSS 125 (193)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------------~~~------------l~~~p~llllDEp-~~LD~~~~~ 125 (193)
+.+.... .............++++.+++. .++ ++.+|+++||||| ++||+.++.
T Consensus 113 l~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~ 191 (258)
T PRK14268 113 VAYGPRI-HGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTA 191 (258)
T ss_pred HHHHHHH-cCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHH
Confidence 4332110 0111100111123344444431 111 7899999999999 699999999
Q ss_pred hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+.++++.+++|.|||++ |||++++.++||++
T Consensus 192 ~l~~~l~~l~~~~tiiiv------sH~~~~~~~~~d~i 223 (258)
T PRK14268 192 RIEDLIMNLKKDYTIVIV------THNMQQAARISDYT 223 (258)
T ss_pred HHHHHHHHHhhCCEEEEE------ECCHHHHHHhCCEE
Confidence 999999988668999999 99999999999984
No 173
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=7.3e-30 Score=211.52 Aligned_cols=157 Identities=15% Similarity=0.215 Sum_probs=115.5
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcc----cCCCCeEEeceEchhhc------cCCceeeEEEeecCC----ccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLK----ASNPSLKVQGFYTGEIR------QGGQRVGFEVVTLDD----RRA 66 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~----~~~G~i~~~g~~~~~~~------~~~~~ig~~~q~~~~----~~~ 66 (193)
|+|.+||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.... ..++.++|+||++.. ..+
T Consensus 28 l~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~t 107 (330)
T PRK15093 28 MTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSER 107 (330)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcchhcCcccc
Confidence 6799999999999999999999999999996 58999999999863211 123579999998632 222
Q ss_pred ccccccCCCCC--C-CCC-Cc-ccceeeehhhhhhhcccc-----------cc------------cCCCCCEEEEecC-C
Q 029421 67 PLASINASSPE--S-YRW-PT-VGRYKVDVASFEAIALPE-----------LQ------------VGADTDLFVIDEV-G 117 (193)
Q Consensus 67 ~~~~~~~~~~~--~-~~~-~~-~~~~~~~~~~l~~~~l~~-----------~~------------l~~~p~llllDEp-~ 117 (193)
..+++...... . ..+ .. ........+.++.+++.. ++ ++.+|++||+||| +
T Consensus 108 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts 187 (330)
T PRK15093 108 VGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTN 187 (330)
T ss_pred HHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 22222111000 0 000 00 011223456777777752 11 8899999999999 6
Q ss_pred CccccccchHHHHHHHHhC--CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 118 KMELFSSSFFPAVLRILES--NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 118 ~LD~~~~~~~~~ll~~l~~--g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
+||+.++..+.++++.+.+ |.|||++ |||+..+.++||++
T Consensus 188 ~LD~~~~~~i~~lL~~l~~~~g~tii~i------tHdl~~v~~~~dri 229 (330)
T PRK15093 188 AMEPTTQAQIFRLLTRLNQNNNTTILLI------SHDLQMLSQWADKI 229 (330)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEE------ECCHHHHHHhCCEE
Confidence 9999999999999998864 8999999 99999999999995
No 174
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.96 E-value=1.4e-29 Score=204.39 Aligned_cols=157 Identities=15% Similarity=0.205 Sum_probs=113.4
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh-----ccCCceeeEEEeecC----Ccccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI-----RQGGQRVGFEVVTLD----DRRAPLASI 71 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~-----~~~~~~ig~~~q~~~----~~~~~~~~~ 71 (193)
|+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ...++.++|++|++. +..+..+++
T Consensus 33 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l 112 (268)
T PRK10419 33 LSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREII 112 (268)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHH
Confidence 57899999999999999999999999999999999999999876422 123567999999752 112333332
Q ss_pred cCCCCCCCCCCcccceeeehhhhhhhccc-cc--------c------------cCCCCCEEEEecC-CCccccccchHHH
Q 029421 72 NASSPESYRWPTVGRYKVDVASFEAIALP-EL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPA 129 (193)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ 129 (193)
.+..................+.++.+++. .. + ++.+|+++||||| ++||+.++..+.+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~ 192 (268)
T PRK10419 113 REPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIR 192 (268)
T ss_pred HHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHH
Confidence 11110000000111111234455555553 11 1 8899999999999 6999999999999
Q ss_pred HHHHHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 130 VLRILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 130 ll~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
+++.+. + |.|+|++ ||+.+++..+||++
T Consensus 193 ~l~~~~~~~~~tiiiv------sH~~~~i~~~~d~i 222 (268)
T PRK10419 193 LLKKLQQQFGTACLFI------THDLRLVERFCQRV 222 (268)
T ss_pred HHHHHHHHcCcEEEEE------ECCHHHHHHhCCEE
Confidence 998875 4 8999999 99999999999983
No 175
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=9.3e-30 Score=206.75 Aligned_cols=155 Identities=14% Similarity=0.181 Sum_probs=115.8
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCC---CCeEEeceEchhh--ccCCceeeEEEeec---CCccccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASN---PSLKVQGFYTGEI--RQGGQRVGFEVVTL---DDRRAPLASIN 72 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~---G~i~~~g~~~~~~--~~~~~~ig~~~q~~---~~~~~~~~~~~ 72 (193)
|+|++|++++|+||||||||||+++|+|+++|++ |+|.++|.++... ...++++||+||++ ....++.+++.
T Consensus 28 l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~ 107 (282)
T PRK13640 28 FSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVA 107 (282)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccCCHHHHHH
Confidence 5789999999999999999999999999999987 8999999987421 22346799999986 22345666654
Q ss_pred CCCCCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421 73 ASSPESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVL 131 (193)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll 131 (193)
+.... .............++++.+++.... ++.+|+++||||| +|||+.++..+.+++
T Consensus 108 ~~~~~-~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l 186 (282)
T PRK13640 108 FGLEN-RAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLI 186 (282)
T ss_pred hhHHh-CCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHH
Confidence 32111 1111111112234556666664321 8899999999999 699999999999999
Q ss_pred HHHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 132 RILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 132 ~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
+.+. + |.|||++ ||+++.+. .||++
T Consensus 187 ~~l~~~~g~tvli~------tH~~~~~~-~~d~i 213 (282)
T PRK13640 187 RKLKKKNNLTVISI------THDIDEAN-MADQV 213 (282)
T ss_pred HHHHHhcCCEEEEE------ecCHHHHH-hCCEE
Confidence 8875 4 8999999 99999884 79984
No 176
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1e-29 Score=205.26 Aligned_cols=155 Identities=12% Similarity=0.159 Sum_probs=111.8
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh--hccCCceeeEEEeecC---CcccccccccCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE--IRQGGQRVGFEVVTLD---DRRAPLASINASS 75 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~--~~~~~~~ig~~~q~~~---~~~~~~~~~~~~~ 75 (193)
|+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.. ....++.++|++|++. ...+..+++.+..
T Consensus 30 l~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~ 109 (269)
T PRK13648 30 FNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGL 109 (269)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhH
Confidence 5789999999999999999999999999999999999999988632 1233567999999752 1222333332211
Q ss_pred CCCCCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHHH
Q 029421 76 PESYRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRIL 134 (193)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l 134 (193)
.. .............+.++.+++... + ++.+|+++||||| ++||+.++..+.++++.+
T Consensus 110 ~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~ 188 (269)
T PRK13648 110 EN-HAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKV 188 (269)
T ss_pred Hh-cCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 10 001110111123345555555322 1 8899999999999 699999999999999887
Q ss_pred h-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 135 E-S-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 135 ~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
. + |.|||++ ||+.+++.. ||++
T Consensus 189 ~~~~~~tiiiv------tH~~~~~~~-~d~i 212 (269)
T PRK13648 189 KSEHNITIISI------THDLSEAME-ADHV 212 (269)
T ss_pred HHhcCCEEEEE------ecCchHHhc-CCEE
Confidence 5 4 8999999 999998875 8884
No 177
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.96 E-value=1e-29 Score=203.99 Aligned_cols=157 Identities=15% Similarity=0.103 Sum_probs=111.5
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceE-----chhhc--c----CCceeeEEEeecC----Ccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFY-----TGEIR--Q----GGQRVGFEVVTLD----DRR 65 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~-----~~~~~--~----~~~~ig~~~q~~~----~~~ 65 (193)
|+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ +.... . .++.++|++|++. ...
T Consensus 27 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 106 (258)
T PRK11701 27 FDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQV 106 (258)
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeCcccccCccc
Confidence 5789999999999999999999999999999999999999987 43211 1 2456999999862 111
Q ss_pred cccccccCCCCCCCCCCcccceeeehhhhhhhcccc-c--------c------------cCCCCCEEEEecC-CCccccc
Q 029421 66 APLASINASSPESYRWPTVGRYKVDVASFEAIALPE-L--------Q------------VGADTDLFVIDEV-GKMELFS 123 (193)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~--------~------------l~~~p~llllDEp-~~LD~~~ 123 (193)
+..+++....................+.++.+++.. . + ++.+|+++||||| ++||+.+
T Consensus 107 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~ 186 (258)
T PRK11701 107 SAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSV 186 (258)
T ss_pred cHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 222232111000000000001112334555555531 1 1 8899999999999 6999999
Q ss_pred cchHHHHHHHHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 124 SSFFPAVLRILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 124 ~~~~~~ll~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
+..+.++++.+. + |.|||++ ||+.+.+..+||++
T Consensus 187 ~~~l~~~l~~~~~~~~~tii~i------sH~~~~~~~~~d~i 222 (258)
T PRK11701 187 QARLLDLLRGLVRELGLAVVIV------THDLAVARLLAHRL 222 (258)
T ss_pred HHHHHHHHHHHHHhcCcEEEEE------eCCHHHHHHhcCEE
Confidence 999999988875 4 8999999 99999999999984
No 178
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.8e-29 Score=202.70 Aligned_cols=157 Identities=13% Similarity=0.202 Sum_probs=112.5
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcc--c---CCCCeEEeceEchh----hccCCceeeEEEeecCC-ccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLK--A---SNPSLKVQGFYTGE----IRQGGQRVGFEVVTLDD-RRAPLAS 70 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~--~---~~G~i~~~g~~~~~----~~~~~~~ig~~~q~~~~-~~~~~~~ 70 (193)
|+|++|++++|+||||||||||+++|+|+++ | ++|+|.++|+++.. ....++.++|+||++.. ..+..++
T Consensus 33 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~en 112 (259)
T PRK14274 33 LSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPFPQSIFDN 112 (259)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCcccccCHHHH
Confidence 5789999999999999999999999999987 3 58999999988632 11234679999998621 1255555
Q ss_pred ccCCCCCCCCCCcccceeeehhhhhhhccc------------ccc------------cCCCCCEEEEecC-CCccccccc
Q 029421 71 INASSPESYRWPTVGRYKVDVASFEAIALP------------ELQ------------VGADTDLFVIDEV-GKMELFSSS 125 (193)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------------~~~------------l~~~p~llllDEp-~~LD~~~~~ 125 (193)
+.+..................+.++.+++. .++ ++.+|+++||||| ++||+.++.
T Consensus 113 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~ 192 (259)
T PRK14274 113 VAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTR 192 (259)
T ss_pred HHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 433211000000000011122334444432 111 7899999999999 699999999
Q ss_pred hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+.++++.++++.|+|++ ||+.+.+.++||++
T Consensus 193 ~l~~~l~~~~~~~tiiiv------tH~~~~~~~~~d~i 224 (259)
T PRK14274 193 KIEELILKLKEKYTIVIV------THNMQQAARVSDQT 224 (259)
T ss_pred HHHHHHHHHhcCCEEEEE------EcCHHHHHHhCCEE
Confidence 999999988768899999 99999999999984
No 179
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.7e-29 Score=203.69 Aligned_cols=157 Identities=13% Similarity=0.172 Sum_probs=114.5
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhccc-----CCCCeEEeceEchh----hccCCceeeEEEeecCCc-cccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKA-----SNPSLKVQGFYTGE----IRQGGQRVGFEVVTLDDR-RAPLAS 70 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~-----~~G~i~~~g~~~~~----~~~~~~~ig~~~q~~~~~-~~~~~~ 70 (193)
|+|++|++++|+||||||||||+++|+|+++| ++|+|.++|.++.. ....++.++|++|++... .+..++
T Consensus 40 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~en 119 (267)
T PRK14235 40 LDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPKSIYEN 119 (267)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCCCCCcHHHH
Confidence 57899999999999999999999999999975 89999999988642 122356799999986311 255555
Q ss_pred ccCCCCCCCCC-Ccccceeeehhhhhhhcccc------------cc------------cCCCCCEEEEecC-CCcccccc
Q 029421 71 INASSPESYRW-PTVGRYKVDVASFEAIALPE------------LQ------------VGADTDLFVIDEV-GKMELFSS 124 (193)
Q Consensus 71 ~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~------------~~------------l~~~p~llllDEp-~~LD~~~~ 124 (193)
+.+........ ..........+.++.+++.. ++ ++.+|++|||||| ++||+.++
T Consensus 120 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~ 199 (267)
T PRK14235 120 VAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIAT 199 (267)
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHH
Confidence 43321100000 01111112234455555421 11 8899999999999 69999999
Q ss_pred chHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 125 SFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 125 ~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
..+.++++.+.++.|||++ ||+++.+..+||++
T Consensus 200 ~~l~~~L~~l~~~~tiiiv------tH~~~~~~~~~d~v 232 (267)
T PRK14235 200 AKVEELIDELRQNYTIVIV------THSMQQAARVSQRT 232 (267)
T ss_pred HHHHHHHHHHhcCCeEEEE------EcCHHHHHhhCCEE
Confidence 9999999988668899999 99999999999984
No 180
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=2e-29 Score=203.56 Aligned_cols=155 Identities=14% Similarity=0.204 Sum_probs=112.6
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcc-----cCCCCeEEeceEchh----hccCCceeeEEEeecCC-ccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLK-----ASNPSLKVQGFYTGE----IRQGGQRVGFEVVTLDD-RRAPLAS 70 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~-----~~~G~i~~~g~~~~~----~~~~~~~ig~~~q~~~~-~~~~~~~ 70 (193)
|+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++.. ....++.++|+||++.. ..++.++
T Consensus 34 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~en 113 (269)
T PRK14259 34 CDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYEN 113 (269)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCccchhhHHHH
Confidence 6789999999999999999999999999987 689999999987631 12234579999998621 1355555
Q ss_pred ccCCCCCCCCCCcccceeeehhhhhhhccc------------ccc------------cCCCCCEEEEecC-CCccccccc
Q 029421 71 INASSPESYRWPTVGRYKVDVASFEAIALP------------ELQ------------VGADTDLFVIDEV-GKMELFSSS 125 (193)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------------~~~------------l~~~p~llllDEp-~~LD~~~~~ 125 (193)
+.+..... .... .......+.++.+++. .++ ++.+|+++||||| ++||+.++.
T Consensus 114 l~~~~~~~-~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~ 191 (269)
T PRK14259 114 IAFGARIN-GYTG-DMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTL 191 (269)
T ss_pred Hhhhhhhc-CCcH-HHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHH
Confidence 54322110 0000 0011122233333321 121 8899999999999 699999999
Q ss_pred hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+.++++.++++.|||++ ||+++++..+||++
T Consensus 192 ~l~~~l~~~~~~~tiiiv------tH~~~~~~~~~d~i 223 (269)
T PRK14259 192 KIEETMHELKKNFTIVIV------THNMQQAVRVSDMT 223 (269)
T ss_pred HHHHHHHHHhcCCEEEEE------eCCHHHHHHhcCEE
Confidence 999999988668899999 99999999999984
No 181
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=3.1e-29 Score=188.89 Aligned_cols=152 Identities=18% Similarity=0.236 Sum_probs=120.0
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeec--CCcccccccccCCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTL--DDRRAPLASINASSPES 78 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~~~ 78 (193)
++|.+||.++++||||||||||+++++|+.+|+.|+|.++|..+... ...-|.+||+. .+.++..+|..+....
T Consensus 26 L~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gP---gaergvVFQ~~~LlPWl~~~dNvafgL~l- 101 (259)
T COG4525 26 LTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGP---GAERGVVFQNEALLPWLNVIDNVAFGLQL- 101 (259)
T ss_pred eeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCC---CccceeEeccCccchhhHHHHHHHHHHHh-
Confidence 47899999999999999999999999999999999999999987432 22347889986 5666777776665431
Q ss_pred CCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHH-HhC
Q 029421 79 YRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRI-LES 136 (193)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~-l~~ 136 (193)
....+..+...+.+.+..+|+.+.. |+.+|++|+|||| +.||...++.++.++-. ++.
T Consensus 102 ~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~ 181 (259)
T COG4525 102 RGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQE 181 (259)
T ss_pred cCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHH
Confidence 2223333334455666666665432 8899999999999 89999999988877765 566
Q ss_pred -CCcEEEEecCCCCCCChhHHHHHhcC
Q 029421 137 -NIPVLASIPAPKSGRDIPAVARLRNH 162 (193)
Q Consensus 137 -g~tvl~~~~~~~~tHd~~~~~~~~d~ 162 (193)
|+.++++ |||++++.-++++
T Consensus 182 tgk~~lli------TH~ieEAlflatr 202 (259)
T COG4525 182 TGKQVLLI------THDIEEALFLATR 202 (259)
T ss_pred hCCeEEEE------eccHHHHHhhhhe
Confidence 9999999 9999999999988
No 182
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.96 E-value=1.3e-29 Score=196.23 Aligned_cols=149 Identities=13% Similarity=0.055 Sum_probs=110.3
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh-ccCCceeeEEEeecC--CcccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI-RQGGQRVGFEVVTLD--DRRAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~-~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~~ 77 (193)
|++++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ...++.++|++|++. +..++.+++.+....
T Consensus 22 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~ 101 (200)
T PRK13540 22 FHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHF 101 (200)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEeccccccCcCCCHHHHHHHHHhc
Confidence 57899999999999999999999999999999999999999876321 223467999998752 334556654432110
Q ss_pred CCCCCcccceeeehhhhhhhcccc--------cc------------cCCCCCEEEEecC-CCccccccchHHHHHHHHhC
Q 029421 78 SYRWPTVGRYKVDVASFEAIALPE--------LQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILES 136 (193)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~l~~--------~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~ 136 (193)
.. . .....+.++.+++.. ++ ++.+|+++|+||| ++||+.++..+.++++.+++
T Consensus 102 ----~~-~-~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~ 175 (200)
T PRK13540 102 ----SP-G-AVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRA 175 (200)
T ss_pred ----Cc-c-hHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHH
Confidence 00 0 112234444444432 11 8899999999999 69999999999999998765
Q ss_pred -CCcEEEEecCCCCCCChhHHHHHhcC
Q 029421 137 -NIPVLASIPAPKSGRDIPAVARLRNH 162 (193)
Q Consensus 137 -g~tvl~~~~~~~~tHd~~~~~~~~d~ 162 (193)
|.|||++ ||+...+.. ||.
T Consensus 176 ~~~tiii~------sh~~~~~~~-~d~ 195 (200)
T PRK13540 176 KGGAVLLT------SHQDLPLNK-ADY 195 (200)
T ss_pred cCCEEEEE------eCCchhccc-cch
Confidence 8999999 999776643 665
No 183
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.96 E-value=1.5e-29 Score=201.99 Aligned_cols=154 Identities=19% Similarity=0.222 Sum_probs=112.7
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeec--CCcccccccccCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTL--DDRRAPLASINASSP 76 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~ 76 (193)
|++++|++++|+||||||||||+++|+|++++ +|+|.++|+++... ...++.++|+||++ ....+..+++.+...
T Consensus 17 l~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~ 95 (248)
T PRK03695 17 AEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQYLTLHQP 95 (248)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHHHHHhcCc
Confidence 57899999999999999999999999999865 89999999886421 12234689999975 223455555443211
Q ss_pred CCCCCCcccceeeehhhhhhhccccc--------c------------cCC-------CCCEEEEecC-CCccccccchHH
Q 029421 77 ESYRWPTVGRYKVDVASFEAIALPEL--------Q------------VGA-------DTDLFVIDEV-GKMELFSSSFFP 128 (193)
Q Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~-------~p~llllDEp-~~LD~~~~~~~~ 128 (193)
. ............+.++.+++... + ++. +|+++||||| ++||+.++..+.
T Consensus 96 ~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~ 173 (248)
T PRK03695 96 D--KTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALD 173 (248)
T ss_pred c--CCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHH
Confidence 1 01111111223455555555432 1 554 6799999999 699999999999
Q ss_pred HHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 129 AVLRILES-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 129 ~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
++++.+++ |.|||++ ||+++++.++||++
T Consensus 174 ~~L~~~~~~~~tvi~~------sH~~~~~~~~~d~i 203 (248)
T PRK03695 174 RLLSELCQQGIAVVMS------SHDLNHTLRHADRV 203 (248)
T ss_pred HHHHHHHhCCCEEEEE------ecCHHHHHHhCCEE
Confidence 99998865 8999999 99999999999984
No 184
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.7e-29 Score=201.83 Aligned_cols=157 Identities=13% Similarity=0.191 Sum_probs=112.0
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhccc-----CCCCeEEeceEchh----hccCCceeeEEEeecCC-ccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKA-----SNPSLKVQGFYTGE----IRQGGQRVGFEVVTLDD-RRAPLAS 70 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~-----~~G~i~~~g~~~~~----~~~~~~~ig~~~q~~~~-~~~~~~~ 70 (193)
|+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.. ....++.++|++|++.. ..+..++
T Consensus 24 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~t~~~n 103 (250)
T PRK14240 24 LDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFPMSIYDN 103 (250)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccCcccHHHH
Confidence 57899999999999999999999999999763 68999999988642 12235679999998621 1455555
Q ss_pred ccCCCCCCCCCCcccceeeehhhhhhhcc------------cccc------------cCCCCCEEEEecC-CCccccccc
Q 029421 71 INASSPESYRWPTVGRYKVDVASFEAIAL------------PELQ------------VGADTDLFVIDEV-GKMELFSSS 125 (193)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l------------~~~~------------l~~~p~llllDEp-~~LD~~~~~ 125 (193)
+.+..................+.++.+++ ..++ ++.+|+++||||| ++||+.++.
T Consensus 104 i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~ 183 (250)
T PRK14240 104 VAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTL 183 (250)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHH
Confidence 43321100000000011112223333332 1122 8899999999999 699999999
Q ss_pred hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+.++++.++++.|||++ ||+++.+.++||++
T Consensus 184 ~l~~~l~~~~~~~tiii~------sH~~~~~~~~~d~v 215 (250)
T PRK14240 184 KIEELIQELKKDYTIVIV------THNMQQASRISDKT 215 (250)
T ss_pred HHHHHHHHHhcCCeEEEE------EeCHHHHHhhCCEE
Confidence 999999988668899999 99999999999984
No 185
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.96 E-value=2.3e-29 Score=219.10 Aligned_cols=157 Identities=13% Similarity=0.074 Sum_probs=118.9
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh---ccCCceeeEEEeec--CCcccccccccCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI---RQGGQRVGFEVVTL--DDRRAPLASINASS 75 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~---~~~~~~ig~~~q~~--~~~~~~~~~~~~~~ 75 (193)
|++++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ...++.+||++|++ .+..++.+++.+..
T Consensus 25 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~ 104 (501)
T PRK11288 25 FDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQ 104 (501)
T ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcc
Confidence 57899999999999999999999999999999999999999886321 12346799999986 23345666654432
Q ss_pred CC-CCC-CCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421 76 PE-SYR-WPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLR 132 (193)
Q Consensus 76 ~~-~~~-~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~ 132 (193)
.. ... ...........+.++.+++... + ++.+|+++||||| ++||+.++..+.++++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~ 184 (501)
T PRK11288 105 LPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIR 184 (501)
T ss_pred cccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHH
Confidence 10 001 0111111234456666766432 1 7899999999999 6999999999999999
Q ss_pred HHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 133 ILES-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 133 ~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+++ |.|||++ |||++++..+||++
T Consensus 185 ~~~~~g~tiiii------tHd~~~~~~~~d~i 210 (501)
T PRK11288 185 ELRAEGRVILYV------SHRMEEIFALCDAI 210 (501)
T ss_pred HHHhCCCEEEEE------eCCHHHHHHhCCEE
Confidence 8866 9999999 99999999999984
No 186
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=2.1e-29 Score=199.22 Aligned_cols=155 Identities=15% Similarity=0.224 Sum_probs=110.4
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecC-CcccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLD-DRRAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~-~~~~~~~~~~~~~~~ 77 (193)
|++++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ...++.++|++|++. ...++.+++.+....
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~ 102 (234)
T cd03251 23 LDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPG 102 (234)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeeccccHHHHhhccCCC
Confidence 57899999999999999999999999999999999999999876422 123467999999762 123555554432211
Q ss_pred CCCCCccc---ceeeehhhhhhh--ccc--------ccc------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421 78 SYRWPTVG---RYKVDVASFEAI--ALP--------ELQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVL 131 (193)
Q Consensus 78 ~~~~~~~~---~~~~~~~~l~~~--~l~--------~~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll 131 (193)
. ...... ......+.++.+ ++. .++ ++.+|+++||||| ++||+.++..+.+++
T Consensus 103 ~-~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l 181 (234)
T cd03251 103 A-TREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAAL 181 (234)
T ss_pred C-CHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHH
Confidence 0 000000 000111222222 111 122 8899999999999 699999999999999
Q ss_pred HHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 132 RILESNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 132 ~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
+.+.++.|||++ ||+++++.. ||++
T Consensus 182 ~~~~~~~tii~~------sh~~~~~~~-~d~v 206 (234)
T cd03251 182 ERLMKNRTTFVI------AHRLSTIEN-ADRI 206 (234)
T ss_pred HHhcCCCEEEEE------ecCHHHHhh-CCEE
Confidence 988678999999 999998865 8883
No 187
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=2.1e-29 Score=200.85 Aligned_cols=156 Identities=15% Similarity=0.183 Sum_probs=114.7
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcc---cCCCCeEEeceEchhh--ccCCceeeEEEeecCC-cccccccccCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLK---ASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDD-RRAPLASINAS 74 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~---~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~-~~~~~~~~~~~ 74 (193)
|++++|++++|+||||||||||+++|+|+++ |++|+|.++|+++... ...++.++|+||++.. ..+..+++.+.
T Consensus 23 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~~tv~eni~~~ 102 (246)
T PRK14269 23 MQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFVKSIYENISYA 102 (246)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCccccccHHHHhhhH
Confidence 5789999999999999999999999999974 6899999999986422 2335679999998621 23555554332
Q ss_pred CCCCCCC--Ccccceeeehhhhhhhccc------------ccc------------cCCCCCEEEEecC-CCccccccchH
Q 029421 75 SPESYRW--PTVGRYKVDVASFEAIALP------------ELQ------------VGADTDLFVIDEV-GKMELFSSSFF 127 (193)
Q Consensus 75 ~~~~~~~--~~~~~~~~~~~~l~~~~l~------------~~~------------l~~~p~llllDEp-~~LD~~~~~~~ 127 (193)
... ... ..........+.++.+++. .++ ++.+|+++||||| ++||+.++..+
T Consensus 103 ~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l 181 (246)
T PRK14269 103 PKL-HGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVI 181 (246)
T ss_pred Hhh-cCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 110 010 0011111223455555552 111 8899999999999 69999999999
Q ss_pred HHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 128 PAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 128 ~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+++..+.+|+|||++ ||+.+++.++||++
T Consensus 182 ~~~l~~~~~~~tiii~------tH~~~~~~~~~d~i 211 (246)
T PRK14269 182 EELLKELSHNLSMIMV------THNMQQGKRVADYT 211 (246)
T ss_pred HHHHHHHhCCCEEEEE------ecCHHHHHhhCcEE
Confidence 9999887668999999 99999999999984
No 188
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.7e-29 Score=201.78 Aligned_cols=157 Identities=13% Similarity=0.186 Sum_probs=112.6
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhh---ccc--CCCCeEEeceEchhh----ccCCceeeEEEeecCC-ccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLES---LKA--SNPSLKVQGFYTGEI----RQGGQRVGFEVVTLDD-RRAPLAS 70 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl---~~~--~~G~i~~~g~~~~~~----~~~~~~ig~~~q~~~~-~~~~~~~ 70 (193)
|+|++|++++|+||||||||||+++|+|+ ++| ++|+|.++|.++... ...++.++|+||++.. ..+..++
T Consensus 24 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~n 103 (250)
T PRK14245 24 MEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFEN 103 (250)
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCccCcccHHHH
Confidence 57899999999999999999999999997 455 589999999886421 2234679999998621 1344555
Q ss_pred ccCCCCCCCCCCcccceeeehhhhhhhcccc------------cc------------cCCCCCEEEEecC-CCccccccc
Q 029421 71 INASSPESYRWPTVGRYKVDVASFEAIALPE------------LQ------------VGADTDLFVIDEV-GKMELFSSS 125 (193)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------------~~------------l~~~p~llllDEp-~~LD~~~~~ 125 (193)
+.+..................+.++.+++.. ++ ++.+|+++||||| ++||+.++.
T Consensus 104 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~ 183 (250)
T PRK14245 104 VAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTA 183 (250)
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHH
Confidence 4322110000000001112234455555421 11 8899999999999 699999999
Q ss_pred hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+.++++.++++.|||++ |||++.+.++||++
T Consensus 184 ~l~~~l~~~~~~~tiiiv------tH~~~~~~~~~d~v 215 (250)
T PRK14245 184 KVEELIHELKKDYTIVIV------THNMQQAARVSDKT 215 (250)
T ss_pred HHHHHHHHHhcCCeEEEE------eCCHHHHHhhCCEE
Confidence 999999988668999999 99999999999983
No 189
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.96 E-value=1.4e-29 Score=197.07 Aligned_cols=146 Identities=17% Similarity=0.204 Sum_probs=108.3
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecC--CcccccccccCCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD--DRRAPLASINASSPES 78 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~~~ 78 (193)
|+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+..... .++.++|++|+.. +..+..+++.+... .
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~tv~~~l~~~~~-~ 100 (207)
T PRK13539 23 FTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPD-VAEACHYLGHRNAMKPALTVAENLEFWAA-F 100 (207)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchh-hHhhcEEecCCCcCCCCCcHHHHHHHHHH-h
Confidence 578999999999999999999999999999999999999998753211 4557899987642 23455555432111 0
Q ss_pred CCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHHHhC-
Q 029421 79 YRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILES- 136 (193)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~- 136 (193)
... ......+.++.+++... + ++.+|+++||||| ++||+.++..+.++++.+++
T Consensus 101 ~~~----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 176 (207)
T PRK13539 101 LGG----EELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQ 176 (207)
T ss_pred cCC----cHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHC
Confidence 000 01123445555555321 1 7899999999999 69999999999999988755
Q ss_pred CCcEEEEecCCCCCCChhHHHH
Q 029421 137 NIPVLASIPAPKSGRDIPAVAR 158 (193)
Q Consensus 137 g~tvl~~~~~~~~tHd~~~~~~ 158 (193)
|.|||++ ||+.+++..
T Consensus 177 ~~tiii~------sH~~~~~~~ 192 (207)
T PRK13539 177 GGIVIAA------THIPLGLPG 192 (207)
T ss_pred CCEEEEE------eCCchhhcc
Confidence 9999999 999888765
No 190
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.96 E-value=1.2e-29 Score=202.86 Aligned_cols=157 Identities=16% Similarity=0.114 Sum_probs=111.3
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceE-----chhhc------cCCceeeEEEeecCC----cc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFY-----TGEIR------QGGQRVGFEVVTLDD----RR 65 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~-----~~~~~------~~~~~ig~~~q~~~~----~~ 65 (193)
|+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ +.... ..++.++|++|++.. ..
T Consensus 24 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 103 (253)
T TIGR02323 24 FDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRV 103 (253)
T ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHHhhhcceEEEEeCcccccCccc
Confidence 6789999999999999999999999999999999999999876 42211 123568999997521 11
Q ss_pred cccccccCCCCCCCCCCcccceeeehhhhhhhcccc-c--------c------------cCCCCCEEEEecC-CCccccc
Q 029421 66 APLASINASSPESYRWPTVGRYKVDVASFEAIALPE-L--------Q------------VGADTDLFVIDEV-GKMELFS 123 (193)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~--------~------------l~~~p~llllDEp-~~LD~~~ 123 (193)
+..+++....................++++.+++.. . + ++.+|+++||||| ++||+.+
T Consensus 104 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~ 183 (253)
T TIGR02323 104 SAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSV 183 (253)
T ss_pred cHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHH
Confidence 222232110000000000011122345566666531 1 1 8899999999999 6999999
Q ss_pred cchHHHHHHHHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 124 SSFFPAVLRILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 124 ~~~~~~ll~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
+..+.++++.+. + |.|||++ ||+.+.+..+||++
T Consensus 184 ~~~l~~~l~~~~~~~~~tii~v------sH~~~~~~~~~d~~ 219 (253)
T TIGR02323 184 QARLLDLLRGLVRDLGLAVIIV------THDLGVARLLAQRL 219 (253)
T ss_pred HHHHHHHHHHHHHhcCCEEEEE------eCCHHHHHHhcCEE
Confidence 999999998764 4 8999999 99999999999983
No 191
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=2.1e-29 Score=201.26 Aligned_cols=157 Identities=15% Similarity=0.161 Sum_probs=112.3
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhccc-----CCCCeEEeceEchh----hccCCceeeEEEeecC-Cccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKA-----SNPSLKVQGFYTGE----IRQGGQRVGFEVVTLD-DRRAPLAS 70 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~-----~~G~i~~~g~~~~~----~~~~~~~ig~~~q~~~-~~~~~~~~ 70 (193)
|++++|++++|+||||||||||+++|+|+++| ++|+|.++|.++.. ....++.++|++|++. ...+..++
T Consensus 24 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~ 103 (250)
T PRK14262 24 MKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFPMSIYDN 103 (250)
T ss_pred EeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCccCcccHHHH
Confidence 67899999999999999999999999999874 89999999987632 1223567999999862 12445555
Q ss_pred ccCCCCCCCCCCcccceeeehhhhhhhccc------------ccc------------cCCCCCEEEEecC-CCccccccc
Q 029421 71 INASSPESYRWPTVGRYKVDVASFEAIALP------------ELQ------------VGADTDLFVIDEV-GKMELFSSS 125 (193)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------------~~~------------l~~~p~llllDEp-~~LD~~~~~ 125 (193)
+.+..................+.++.+++. .++ ++.+|+++||||| ++||+.++.
T Consensus 104 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~ 183 (250)
T PRK14262 104 VAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQ 183 (250)
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHH
Confidence 433211000000000011122333333331 111 7899999999999 699999999
Q ss_pred hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+.+++..+.++.|||++ ||+.+.+..+||++
T Consensus 184 ~l~~~l~~~~~~~tili~------sH~~~~~~~~~d~i 215 (250)
T PRK14262 184 RIEKLLEELSENYTIVIV------THNIGQAIRIADYI 215 (250)
T ss_pred HHHHHHHHHhcCcEEEEE------eCCHHHHHHhCCEE
Confidence 999999988668899999 99999999999984
No 192
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.96 E-value=1.6e-28 Score=186.42 Aligned_cols=146 Identities=16% Similarity=0.252 Sum_probs=107.1
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecCCcccccccccCCCCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPLASINASSPESYR 80 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~ 80 (193)
|++++|++++|+||||||||||+|+|+|+++|++|+|.++|. .++|++|.+. + ..
T Consensus 20 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~----------~i~~~~q~~~----------L----Sg- 74 (177)
T cd03222 20 GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGI----------TPVYKPQYID----------L----SG- 74 (177)
T ss_pred cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCE----------EEEEEcccCC----------C----CH-
Confidence 578999999999999999999999999999999999999884 3678877432 0 00
Q ss_pred CCcccceeeehhhhhhhcccccccCCCCCEEEEecC-CCccccccchHHHHHHHHhC-C-CcEEEEecCCCCCCChhHHH
Q 029421 81 WPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEV-GKMELFSSSFFPAVLRILES-N-IPVLASIPAPKSGRDIPAVA 157 (193)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~-g-~tvl~~~~~~~~tHd~~~~~ 157 (193)
+ ..+++.+. ..++.+|+++++||| ++||+.++..+.+++..+++ + .|||++ ||+++.+.
T Consensus 75 ----G-------q~qrv~la-ral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiiv------sH~~~~~~ 136 (177)
T cd03222 75 ----G-------ELQRVAIA-AALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVV------EHDLAVLD 136 (177)
T ss_pred ----H-------HHHHHHHH-HHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEE------ECCHHHHH
Confidence 0 01111211 236789999999999 69999999999999988754 4 899999 99999999
Q ss_pred HHhcCCC----c-EEEEeCCCChhHHHHHHHHHHHHHh
Q 029421 158 RLRNHPG----A-TIFTLSPGNRDSLKDNIYYQLTDAV 190 (193)
Q Consensus 158 ~~~d~~~----~-~~~~~~~~~~~~l~~~~~~~~~~~~ 190 (193)
.+||++. . .+..+. +++...++.+...+..++
T Consensus 137 ~~~d~i~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 173 (177)
T cd03222 137 YLSDRIHVFEGEPGVYGIA-SQPKGTREGINRFLRGYL 173 (177)
T ss_pred HhCCEEEEEcCCCccceec-cCCcchhHHHHHHHHhhc
Confidence 9999831 1 111111 233355666666666554
No 193
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.5e-29 Score=205.03 Aligned_cols=155 Identities=12% Similarity=0.157 Sum_probs=114.6
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh--hccCCceeeEEEeec---CCcccccccccCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE--IRQGGQRVGFEVVTL---DDRRAPLASINASS 75 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~--~~~~~~~ig~~~q~~---~~~~~~~~~~~~~~ 75 (193)
|+|.+|++++|+|+||||||||+++|+|+++|++|+|.++|+++.. ....++.+||++|++ ....++.+++.+..
T Consensus 28 l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~ 107 (277)
T PRK13642 28 FSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGM 107 (277)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhH
Confidence 5789999999999999999999999999999999999999988642 223356799999985 22345555554321
Q ss_pred CCCCCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHHH
Q 029421 76 PESYRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRIL 134 (193)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l 134 (193)
.. .............++++.+++..+ + ++.+|+++||||| ++||+.++..+.++++.+
T Consensus 108 ~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l 186 (277)
T PRK13642 108 EN-QGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEI 186 (277)
T ss_pred HH-cCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 10 011111111223345555555322 1 8899999999999 699999999999999887
Q ss_pred h-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 135 E-S-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 135 ~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
. + |.|||++ ||+++++. .||++
T Consensus 187 ~~~~g~tiil~------sH~~~~~~-~~d~i 210 (277)
T PRK13642 187 KEKYQLTVLSI------THDLDEAA-SSDRI 210 (277)
T ss_pred HHhcCCEEEEE------eCCHHHHH-hCCEE
Confidence 5 4 8999999 99999986 59884
No 194
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=2.4e-29 Score=201.03 Aligned_cols=157 Identities=13% Similarity=0.138 Sum_probs=113.1
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhccc-----CCCCeEEeceEchhh----ccCCceeeEEEeecCC-ccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKA-----SNPSLKVQGFYTGEI----RQGGQRVGFEVVTLDD-RRAPLAS 70 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~-----~~G~i~~~g~~~~~~----~~~~~~ig~~~q~~~~-~~~~~~~ 70 (193)
|+|++|++++|+||||||||||+++|+|+.+| ++|+|.++|.++... ...++.++|+||++.. ..+..++
T Consensus 25 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~tv~en 104 (251)
T PRK14270 25 LPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFPMSIYDN 104 (251)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCcCCCcHHHH
Confidence 57899999999999999999999999999875 789999999886421 1235679999998621 2455555
Q ss_pred ccCCCCCCCCCCcccceeeehhhhhhhccc------------ccc------------cCCCCCEEEEecC-CCccccccc
Q 029421 71 INASSPESYRWPTVGRYKVDVASFEAIALP------------ELQ------------VGADTDLFVIDEV-GKMELFSSS 125 (193)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------------~~~------------l~~~p~llllDEp-~~LD~~~~~ 125 (193)
+.+..................+.++.+++. .++ ++.+|+++||||| ++||+.++.
T Consensus 105 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~ 184 (251)
T PRK14270 105 VAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTL 184 (251)
T ss_pred HHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 433211000000001111222344444431 111 7889999999999 699999999
Q ss_pred hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+.++++.+.++.|||++ ||+.+++.++||++
T Consensus 185 ~l~~~L~~~~~~~tiiiv------sH~~~~~~~~~d~v 216 (251)
T PRK14270 185 KIEDLMVELKKEYTIVIV------THNMQQASRVSDYT 216 (251)
T ss_pred HHHHHHHHHHhCCeEEEE------EcCHHHHHHhcCEE
Confidence 999999888667899999 99999999999984
No 195
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.96 E-value=2.6e-29 Score=201.26 Aligned_cols=154 Identities=16% Similarity=0.222 Sum_probs=112.4
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhccc----CCCCeEEeceEchhhccCCceeeEEEeecC----Cccccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKA----SNPSLKVQGFYTGEIRQGGQRVGFEVVTLD----DRRAPLASIN 72 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~----~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~----~~~~~~~~~~ 72 (193)
|+|.+|++++|+||||||||||+++|+|+++| ++|+|.++|.++......++.++|++|++. +..+..++..
T Consensus 24 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~ 103 (254)
T PRK10418 24 LTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHAR 103 (254)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCccccHHHHHH
Confidence 57899999999999999999999999999999 999999999887432222457999999852 1112222211
Q ss_pred CCCCCCCCCCcccceeeehhhhhhhcccc-----------cc------------cCCCCCEEEEecC-CCccccccchHH
Q 029421 73 ASSPESYRWPTVGRYKVDVASFEAIALPE-----------LQ------------VGADTDLFVIDEV-GKMELFSSSFFP 128 (193)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~------------l~~~p~llllDEp-~~LD~~~~~~~~ 128 (193)
.... ...... ......+.++.+++.. ++ ++.+|++|||||| ++||+.++..+.
T Consensus 104 ~~~~-~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~ 180 (254)
T PRK10418 104 ETCL-ALGKPA--DDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARIL 180 (254)
T ss_pred HHHH-HcCCCh--HHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHH
Confidence 1000 000010 1122344555666543 11 8899999999999 699999999999
Q ss_pred HHHHHHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 129 AVLRILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 129 ~ll~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
++++.+. + |.|||++ ||+.+++..+||++
T Consensus 181 ~~L~~~~~~~g~til~~------sH~~~~~~~~~d~v 211 (254)
T PRK10418 181 DLLESIVQKRALGMLLV------THDMGVVARLADDV 211 (254)
T ss_pred HHHHHHHHhcCcEEEEE------ecCHHHHHHhCCEE
Confidence 9998874 4 8999999 99999999999984
No 196
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=3.6e-29 Score=201.26 Aligned_cols=155 Identities=10% Similarity=0.112 Sum_probs=114.1
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhccc-----CCCCeEEeceEchh----hccCCceeeEEEeecCC-ccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKA-----SNPSLKVQGFYTGE----IRQGGQRVGFEVVTLDD-RRAPLAS 70 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~-----~~G~i~~~g~~~~~----~~~~~~~ig~~~q~~~~-~~~~~~~ 70 (193)
|++++|++++|+||||||||||+++|+|+++| ++|+|.++|.++.. ....++.++|++|++.. ..+..++
T Consensus 29 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~en 108 (261)
T PRK14263 29 VPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPFSMSIFDN 108 (261)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCccccccHHHH
Confidence 67899999999999999999999999999986 79999999988632 11235679999998632 3455555
Q ss_pred ccCCCCCCCCCCcccceeeehhhhhhhccc------------ccc------------cCCCCCEEEEecC-CCccccccc
Q 029421 71 INASSPESYRWPTVGRYKVDVASFEAIALP------------ELQ------------VGADTDLFVIDEV-GKMELFSSS 125 (193)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------------~~~------------l~~~p~llllDEp-~~LD~~~~~ 125 (193)
+.+...... .. ........+.++.+++. .++ ++.+|+++||||| +|||+.++.
T Consensus 109 l~~~~~~~~-~~-~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~ 186 (261)
T PRK14263 109 VAFGLRLNR-YK-GDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATR 186 (261)
T ss_pred HHHHHhhcC-ch-HHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHH
Confidence 443211100 00 00011223344444431 122 7899999999999 699999999
Q ss_pred hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+.++++.++++.|+|++ ||+++++.++||++
T Consensus 187 ~l~~~l~~~~~~~tii~i------sH~~~~i~~~~d~v 218 (261)
T PRK14263 187 RVEELMVELKKDYTIALV------THNMQQAIRVADTT 218 (261)
T ss_pred HHHHHHHHHhcCCeEEEE------eCCHHHHHHhCCEE
Confidence 999999988668899999 99999999999984
No 197
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=2.6e-29 Score=202.67 Aligned_cols=157 Identities=13% Similarity=0.179 Sum_probs=111.2
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcc-----cCCCCeEEeceEchhh----ccCCceeeEEEeecCC-ccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLK-----ASNPSLKVQGFYTGEI----RQGGQRVGFEVVTLDD-RRAPLAS 70 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~-----~~~G~i~~~g~~~~~~----~~~~~~ig~~~q~~~~-~~~~~~~ 70 (193)
|+|++|++++|+||||||||||+++|+|+++ |++|+|.++|+++... ...++.++|++|++.. ..+..++
T Consensus 42 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~en 121 (268)
T PRK14248 42 MDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNN 121 (268)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCccCcccHHHH
Confidence 5789999999999999999999999999865 6899999999886321 1235679999998621 1244555
Q ss_pred ccCCCCCCCCCCcccceeeehhhhhhhcc------------cccc------------cCCCCCEEEEecC-CCccccccc
Q 029421 71 INASSPESYRWPTVGRYKVDVASFEAIAL------------PELQ------------VGADTDLFVIDEV-GKMELFSSS 125 (193)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l------------~~~~------------l~~~p~llllDEp-~~LD~~~~~ 125 (193)
+.+..................+.++.+++ ..++ ++.+|+++||||| ++||+.++.
T Consensus 122 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~ 201 (268)
T PRK14248 122 ITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNA 201 (268)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHH
Confidence 43321100000000000111222333322 1122 7899999999999 699999999
Q ss_pred hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+.++++.++++.|||++ |||++++.++||++
T Consensus 202 ~l~~~l~~~~~~~tiii~------tH~~~~~~~~~d~v 233 (268)
T PRK14248 202 KIEELITELKEEYSIIIV------THNMQQALRVSDRT 233 (268)
T ss_pred HHHHHHHHHhcCCEEEEE------EeCHHHHHHhCCEE
Confidence 999999988667899999 99999999999984
No 198
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=3.7e-29 Score=199.96 Aligned_cols=156 Identities=15% Similarity=0.165 Sum_probs=112.5
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccC-----CCCeEEeceEchhh----ccCCceeeEEEeecCC-ccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKAS-----NPSLKVQGFYTGEI----RQGGQRVGFEVVTLDD-RRAPLAS 70 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~-----~G~i~~~g~~~~~~----~~~~~~ig~~~q~~~~-~~~~~~~ 70 (193)
|+|.+|++++|+||||||||||+++|+|+++|+ +|+|.++|.++... ...++.++|+||++.. ..+..++
T Consensus 25 ~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~en 104 (251)
T PRK14249 25 MDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDN 104 (251)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCccCcCcHHHH
Confidence 578999999999999999999999999999997 69999999876321 1335679999998631 1255555
Q ss_pred ccCCCCCCCCCCccc-ceeeehhhhhhhccc------------ccc------------cCCCCCEEEEecC-CCcccccc
Q 029421 71 INASSPESYRWPTVG-RYKVDVASFEAIALP------------ELQ------------VGADTDLFVIDEV-GKMELFSS 124 (193)
Q Consensus 71 ~~~~~~~~~~~~~~~-~~~~~~~~l~~~~l~------------~~~------------l~~~p~llllDEp-~~LD~~~~ 124 (193)
+.+.... ....... ......+.++.+++. .++ ++.+|+++||||| ++||+.++
T Consensus 105 l~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~ 183 (251)
T PRK14249 105 VAFGPRM-LGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVST 183 (251)
T ss_pred HhhHHHh-cCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHH
Confidence 4432110 0000000 001112222333321 121 8899999999999 69999999
Q ss_pred chHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 125 SFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 125 ~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
..+.++++.++++.|||++ ||+++.+..+||++
T Consensus 184 ~~l~~~l~~~~~~~tiliv------sh~~~~~~~~~d~i 216 (251)
T PRK14249 184 MRIEELMQELKQNYTIAIV------THNMQQAARASDWT 216 (251)
T ss_pred HHHHHHHHHHhcCCEEEEE------eCCHHHHHhhCCEE
Confidence 9999999988668999999 99999999999984
No 199
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.96 E-value=1.8e-29 Score=216.31 Aligned_cols=158 Identities=17% Similarity=0.186 Sum_probs=121.0
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEc--h--hhccCCceeeEEEeecC----Cccccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYT--G--EIRQGGQRVGFEVVTLD----DRRAPLASIN 72 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~--~--~~~~~~~~ig~~~q~~~----~~~~~~~~~~ 72 (193)
|++.+||+++|+|+||||||||.|+|+|+++|++|+|.++|.+. . ..+..++++-++||+++ +..++.+.+.
T Consensus 312 f~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~ 391 (539)
T COG1123 312 FDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILA 391 (539)
T ss_pred eEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHH
Confidence 67899999999999999999999999999999999999999873 1 12234567888999884 3344444433
Q ss_pred CCCCCCCCCCcccceeeehhhhhhhccccc---------c------------cCCCCCEEEEecC-CCccccccchHHHH
Q 029421 73 ASSPESYRWPTVGRYKVDVASFEAIALPEL---------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAV 130 (193)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---------~------------l~~~p~llllDEp-~~LD~~~~~~~~~l 130 (193)
.+..............+..+.++.+++..- + |+.+|+++++||| +.||+..+..+.++
T Consensus 392 epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnL 471 (539)
T COG1123 392 EPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNL 471 (539)
T ss_pred hHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHH
Confidence 322211111111222345567777777631 1 8999999999999 79999999999999
Q ss_pred HHHHhC--CCcEEEEecCCCCCCChhHHHHHhcCCC
Q 029421 131 LRILES--NIPVLASIPAPKSGRDIPAVARLRNHPG 164 (193)
Q Consensus 131 l~~l~~--g~tvl~~~~~~~~tHd~~~~~~~~d~~~ 164 (193)
++.+++ |.|+|++ |||+..+..+||++.
T Consensus 472 l~~lq~e~g~t~lfI------SHDl~vV~~i~drv~ 501 (539)
T COG1123 472 LKDLQEELGLTYLFI------SHDLAVVRYIADRVA 501 (539)
T ss_pred HHHHHHHhCCEEEEE------eCCHHHHHhhCceEE
Confidence 999875 9999999 999999999999954
No 200
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=3.6e-29 Score=218.10 Aligned_cols=157 Identities=11% Similarity=0.131 Sum_probs=117.2
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcc-cCCCCeEEeceEchhh---ccCCceeeEEEeec-----CCcccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLK-ASNPSLKVQGFYTGEI---RQGGQRVGFEVVTL-----DDRRAPLASI 71 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~-~~~G~i~~~g~~~~~~---~~~~~~ig~~~q~~-----~~~~~~~~~~ 71 (193)
|+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|+++... ...+..++|++|++ ....++.+++
T Consensus 283 l~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l 362 (506)
T PRK13549 283 FSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNI 362 (506)
T ss_pred eEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHh
Confidence 6899999999999999999999999999998 5999999999876321 12245699999974 2234555554
Q ss_pred cCCCCC-CCC---CCcccceeeehhhhhhhccc-cc--------c------------cCCCCCEEEEecC-CCccccccc
Q 029421 72 NASSPE-SYR---WPTVGRYKVDVASFEAIALP-EL--------Q------------VGADTDLFVIDEV-GKMELFSSS 125 (193)
Q Consensus 72 ~~~~~~-~~~---~~~~~~~~~~~~~l~~~~l~-~~--------~------------l~~~p~llllDEp-~~LD~~~~~ 125 (193)
.+.... ... ...........++++.+++. .. + ++.+|++|||||| ++||+.++.
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~ 442 (506)
T PRK13549 363 TLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKY 442 (506)
T ss_pred hhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHH
Confidence 432110 000 01111112345667777764 22 1 7889999999999 699999999
Q ss_pred hHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 126 FFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 126 ~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+.++++.+++ |.|||++ |||++++.++||++
T Consensus 443 ~l~~~l~~l~~~g~tvi~~------sHd~~~~~~~~d~v 475 (506)
T PRK13549 443 EIYKLINQLVQQGVAIIVI------SSELPEVLGLSDRV 475 (506)
T ss_pred HHHHHHHHHHHCCCEEEEE------CCCHHHHHHhCCEE
Confidence 99999998876 9999999 99999999999983
No 201
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.96 E-value=3.2e-29 Score=202.17 Aligned_cols=157 Identities=15% Similarity=0.183 Sum_probs=113.3
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcc-----cCCCCeEEeceEchh----hccCCceeeEEEeecCC-ccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLK-----ASNPSLKVQGFYTGE----IRQGGQRVGFEVVTLDD-RRAPLAS 70 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~-----~~~G~i~~~g~~~~~----~~~~~~~ig~~~q~~~~-~~~~~~~ 70 (193)
|++.+|++++|+||||||||||+++|+|+++ |++|+|.++|.++.. ....++.++|+||++.. ..+..++
T Consensus 41 l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~en 120 (267)
T PRK14237 41 MQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPFAKSIYEN 120 (267)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCccccccHHHH
Confidence 5789999999999999999999999999986 589999999988632 12235679999997621 2355555
Q ss_pred ccCCCCCCCCCCcccceeeehhhhhhhccc------------ccc------------cCCCCCEEEEecC-CCccccccc
Q 029421 71 INASSPESYRWPTVGRYKVDVASFEAIALP------------ELQ------------VGADTDLFVIDEV-GKMELFSSS 125 (193)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------------~~~------------l~~~p~llllDEp-~~LD~~~~~ 125 (193)
+.+..................+.++.+++. .++ ++.+|+++||||| ++||+.++.
T Consensus 121 i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~ 200 (267)
T PRK14237 121 ITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTM 200 (267)
T ss_pred HHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 543211100000000111122334444431 111 7899999999999 699999999
Q ss_pred hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+.++++.++++.|||++ ||+.+++.++||++
T Consensus 201 ~l~~~l~~~~~~~tiii~------tH~~~~~~~~~d~i 232 (267)
T PRK14237 201 QLEETMFELKKNYTIIIV------THNMQQAARASDYT 232 (267)
T ss_pred HHHHHHHHHhcCCEEEEE------ecCHHHHHHhcCEE
Confidence 999999988668899999 99999999999984
No 202
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.96 E-value=2.3e-29 Score=198.13 Aligned_cols=156 Identities=12% Similarity=0.108 Sum_probs=111.0
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecC-CcccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLD-DRRAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~-~~~~~~~~~~~~~~~ 77 (193)
|+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ...++.++|++|++. ...+..+++.+....
T Consensus 35 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~~nl~~~~~~ 114 (226)
T cd03248 35 FTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQS 114 (226)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhEEEEecccHHHhhhHHHHhccccCC
Confidence 57899999999999999999999999999999999999999876422 223467999999862 123455554432211
Q ss_pred CCCC--Ccccceeeehhhhhhh--cccc--------cc------------cCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421 78 SYRW--PTVGRYKVDVASFEAI--ALPE--------LQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVLR 132 (193)
Q Consensus 78 ~~~~--~~~~~~~~~~~~l~~~--~l~~--------~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~ 132 (193)
.... ..........+.++.+ ++.. ++ ++.+|+++||||| ++||+.++..+.++++
T Consensus 115 ~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~ 194 (226)
T cd03248 115 CSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALY 194 (226)
T ss_pred CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 0000 0000001122333444 3332 11 8899999999999 6999999999999999
Q ss_pred HHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 133 ILESNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 133 ~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+.++.|+|++ |||.+++. .||++
T Consensus 195 ~~~~~~tii~~------sh~~~~~~-~~d~i 218 (226)
T cd03248 195 DWPERRTVLVI------AHRLSTVE-RADQI 218 (226)
T ss_pred HHcCCCEEEEE------ECCHHHHH-hCCEE
Confidence 88667899999 99999885 48873
No 203
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.96 E-value=2.9e-29 Score=223.29 Aligned_cols=157 Identities=17% Similarity=0.175 Sum_probs=117.6
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh-----ccCCceeeEEEeec----CCcccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI-----RQGGQRVGFEVVTL----DDRRAPLASI 71 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~-----~~~~~~ig~~~q~~----~~~~~~~~~~ 71 (193)
|+|.+|++++|+||||||||||+|+|+|+++|++|+|.++|.++... +..+++++|+||++ ++..++.+++
T Consensus 345 ~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l 424 (623)
T PRK10261 345 FDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSI 424 (623)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHH
Confidence 67899999999999999999999999999999999999999876321 12356799999985 2233444443
Q ss_pred cCCCCCCCCCCcccceeeehhhhhhhccc-cc--------c------------cCCCCCEEEEecC-CCccccccchHHH
Q 029421 72 NASSPESYRWPTVGRYKVDVASFEAIALP-EL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPA 129 (193)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ 129 (193)
....................++++.+++. .. + ++.+|++|||||| ++||+.++..+.+
T Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ 504 (623)
T PRK10261 425 MEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIIN 504 (623)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 32111000001111112344667777774 22 1 8899999999999 6999999999999
Q ss_pred HHHHHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 130 VLRILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 130 ll~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
+++.++ + |.|||++ |||++.+..+||++
T Consensus 505 ll~~l~~~~g~tvi~i------sHdl~~v~~~~dri 534 (623)
T PRK10261 505 LLLDLQRDFGIAYLFI------SHDMAVVERISHRV 534 (623)
T ss_pred HHHHHHHhcCCEEEEE------eCCHHHHHHhCCEE
Confidence 998875 4 8999999 99999999999994
No 204
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.96 E-value=1.6e-29 Score=192.78 Aligned_cols=144 Identities=17% Similarity=0.288 Sum_probs=102.8
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCCcccccccccCCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDDRRAPLASINASSPES 78 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~ 78 (193)
|++.+|++++|+||||||||||+++|+|+++|++|+|.++|.++... ...+..++|++|- .+...+. ..
T Consensus 20 ~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~-------l~~~gl~--~~ 90 (180)
T cd03214 20 LSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQA-------LELLGLA--HL 90 (180)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHH-------HHHcCCH--hH
Confidence 57899999999999999999999999999999999999999876421 1223457888771 1111110 00
Q ss_pred CCCCcccceeeehhhhhhhcccccccCCCCCEEEEecC-CCccccccchHHHHHHHHhC--CCcEEEEecCCCCCCChhH
Q 029421 79 YRWPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEV-GKMELFSSSFFPAVLRILES--NIPVLASIPAPKSGRDIPA 155 (193)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~--g~tvl~~~~~~~~tHd~~~ 155 (193)
.... .. ..-.-..+++.+. ..++.+|+++||||| ++||+.++..+.++++.+++ |.|+|++ ||+.++
T Consensus 91 ~~~~-~~--~LS~G~~qrl~la-ral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~------sh~~~~ 160 (180)
T cd03214 91 ADRP-FN--ELSGGERQRVLLA-RALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMV------LHDLNL 160 (180)
T ss_pred hcCC-cc--cCCHHHHHHHHHH-HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEE------eCCHHH
Confidence 0000 00 0000111222221 236889999999999 69999999999999988754 8999999 999999
Q ss_pred HHHHhcCC
Q 029421 156 VARLRNHP 163 (193)
Q Consensus 156 ~~~~~d~~ 163 (193)
+.++||++
T Consensus 161 ~~~~~d~~ 168 (180)
T cd03214 161 AARYADRV 168 (180)
T ss_pred HHHhCCEE
Confidence 98999983
No 205
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=2.9e-29 Score=200.56 Aligned_cols=157 Identities=13% Similarity=0.109 Sum_probs=112.4
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcc-----cCCCCeEEeceEchh----hccCCceeeEEEeecCC-ccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLK-----ASNPSLKVQGFYTGE----IRQGGQRVGFEVVTLDD-RRAPLAS 70 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~-----~~~G~i~~~g~~~~~----~~~~~~~ig~~~q~~~~-~~~~~~~ 70 (193)
|+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++.. ....++.++|++|++.. ..++.++
T Consensus 25 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~en 104 (251)
T PRK14251 25 LDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFPFSVYDN 104 (251)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCccCCCcHHHH
Confidence 5789999999999999999999999999997 479999999987632 12235679999998621 2355555
Q ss_pred ccCCCCCCCCCCcccceeeehhhhhhhccc------------ccc------------cCCCCCEEEEecC-CCccccccc
Q 029421 71 INASSPESYRWPTVGRYKVDVASFEAIALP------------ELQ------------VGADTDLFVIDEV-GKMELFSSS 125 (193)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------------~~~------------l~~~p~llllDEp-~~LD~~~~~ 125 (193)
+.+..................+.++.+++. .++ ++.+|+++||||| ++||+.++.
T Consensus 105 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~ 184 (251)
T PRK14251 105 VAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSS 184 (251)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHH
Confidence 433211000000000011122334444431 111 7899999999999 699999999
Q ss_pred hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+.++++.++++.|||++ ||+++++.++||++
T Consensus 185 ~l~~~l~~~~~~~tiiii------sH~~~~~~~~~d~i 216 (251)
T PRK14251 185 EIEETLMELKHQYTFIMV------THNLQQAGRISDQT 216 (251)
T ss_pred HHHHHHHHHHcCCeEEEE------ECCHHHHHhhcCEE
Confidence 999999988668899999 99999999999984
No 206
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.96 E-value=4.6e-29 Score=195.59 Aligned_cols=149 Identities=17% Similarity=0.204 Sum_probs=108.2
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCC-cccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDD-RRAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~ 77 (193)
|+|++|++++|+||||||||||+++|+|+.+|++|+|.++|.++... ...++.++|++|++.. ..+..+++.+....
T Consensus 25 ~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~ 104 (220)
T cd03245 25 LTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPL 104 (220)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCccccchHHHHhhcCCCC
Confidence 57899999999999999999999999999999999999999876321 1224579999998621 23444544332110
Q ss_pred CCCCCcccceeeehhhhhhhcc-------------------cccc------------cCCCCCEEEEecC-CCccccccc
Q 029421 78 SYRWPTVGRYKVDVASFEAIAL-------------------PELQ------------VGADTDLFVIDEV-GKMELFSSS 125 (193)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~l-------------------~~~~------------l~~~p~llllDEp-~~LD~~~~~ 125 (193)
. .. ....+.++.+++ ..++ ++.+|+++||||| ++||+.++.
T Consensus 105 ~---~~----~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~ 177 (220)
T cd03245 105 A---DD----ERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEE 177 (220)
T ss_pred C---CH----HHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHH
Confidence 0 00 001111111111 1222 7899999999999 699999999
Q ss_pred hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+.++++.++++.|||++ |||.+.+ ++||++
T Consensus 178 ~l~~~l~~~~~~~tii~~------sH~~~~~-~~~d~v 208 (220)
T cd03245 178 RLKERLRQLLGDKTLIII------THRPSLL-DLVDRI 208 (220)
T ss_pred HHHHHHHHhcCCCEEEEE------eCCHHHH-HhCCEE
Confidence 999999988666899999 9999876 689883
No 207
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.96 E-value=5.7e-29 Score=189.33 Aligned_cols=141 Identities=11% Similarity=0.148 Sum_probs=104.8
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh-ccCCceeeEEEeecCC-cccccccccCCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI-RQGGQRVGFEVVTLDD-RRAPLASINASSPES 78 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~-~~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~~ 78 (193)
|++++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ...++.++|++|++.. ..+..+++ .
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i----~-- 96 (178)
T cd03247 23 LELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNL----G-- 96 (178)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhh----c--
Confidence 57899999999999999999999999999999999999999876432 2234678999997521 12222221 0
Q ss_pred CCCCcccceeeehhhhhhhcccccccCCCCCEEEEecC-CCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChhHHH
Q 029421 79 YRWPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEV-GKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVA 157 (193)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~ 157 (193)
... -.-..+++.+. .+++.+|+++||||| ++||+.++..+.++++.+.++.|||++ ||+.+++.
T Consensus 97 ~~L--------S~G~~qrv~la-ral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~------sh~~~~~~ 161 (178)
T cd03247 97 RRF--------SGGERQRLALA-RILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWI------THHLTGIE 161 (178)
T ss_pred ccC--------CHHHHHHHHHH-HHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEE------ecCHHHHH
Confidence 000 00111222221 236899999999999 699999999999999888668999999 99998875
Q ss_pred HHhcCC
Q 029421 158 RLRNHP 163 (193)
Q Consensus 158 ~~~d~~ 163 (193)
.||++
T Consensus 162 -~~d~~ 166 (178)
T cd03247 162 -HMDKI 166 (178)
T ss_pred -hCCEE
Confidence 58773
No 208
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.96 E-value=2.9e-29 Score=200.57 Aligned_cols=157 Identities=13% Similarity=0.122 Sum_probs=111.3
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhc--cc---CCCCeEEeceEchh----hccCCceeeEEEeecCC-ccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESL--KA---SNPSLKVQGFYTGE----IRQGGQRVGFEVVTLDD-RRAPLAS 70 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~--~~---~~G~i~~~g~~~~~----~~~~~~~ig~~~q~~~~-~~~~~~~ 70 (193)
|+|++|++++|+||||||||||+++|+|+. +| ++|+|.++|.++.. ....++.++|+||++.. ..+..++
T Consensus 26 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~en 105 (252)
T PRK14239 26 LDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFPMSIYEN 105 (252)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCccCcCcHHHH
Confidence 578999999999999999999999999985 36 48999999987632 11234679999998621 2455555
Q ss_pred ccCCCCCCCCCCcccceeeehhhhhhhccc------------ccc------------cCCCCCEEEEecC-CCccccccc
Q 029421 71 INASSPESYRWPTVGRYKVDVASFEAIALP------------ELQ------------VGADTDLFVIDEV-GKMELFSSS 125 (193)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------------~~~------------l~~~p~llllDEp-~~LD~~~~~ 125 (193)
+.+..................+.++.+++. .++ ++.+|+++||||| ++||+.++.
T Consensus 106 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~ 185 (252)
T PRK14239 106 VVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAG 185 (252)
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHH
Confidence 433211000000000011122233333321 111 7899999999999 699999999
Q ss_pred hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+.++++.+.++.|||++ |||++++.++||++
T Consensus 186 ~l~~~l~~~~~~~tii~~------sH~~~~~~~~~d~i 217 (252)
T PRK14239 186 KIEETLLGLKDDYTMLLV------TRSMQQASRISDRT 217 (252)
T ss_pred HHHHHHHHHhhCCeEEEE------ECCHHHHHHhCCEE
Confidence 999999988667899999 99999999999984
No 209
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.96 E-value=3.7e-29 Score=192.88 Aligned_cols=146 Identities=14% Similarity=0.150 Sum_probs=108.6
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhc--ccCCCCeEEeceEchhhccCCceeeEEEeecC--CcccccccccCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESL--KASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD--DRRAPLASINASSP 76 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~--~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~ 76 (193)
|++++|++++|+||||||||||+++|+|++ +|++|+|.++|+++... ..++.++|++|++. +..+..+++.+...
T Consensus 30 ~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~-~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~ 108 (194)
T cd03213 30 GKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKR-SFRKIIGYVPQDDILHPTLTVRETLMFAAK 108 (194)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchH-hhhheEEEccCcccCCCCCcHHHHHHHHHH
Confidence 578999999999999999999999999999 99999999999987532 34567999999752 22344444322100
Q ss_pred CCCCCCcccceeeehhhhhhhcccccccCCCCCEEEEecC-CCccccccchHHHHHHHHhC-CCcEEEEecCCCCCCChh
Q 029421 77 ESYRWPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEV-GKMELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIP 154 (193)
Q Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~ 154 (193)
. . ..-.-..+++.+. ..++.+|+++|+||| ++||+.++..+.++++.+.+ |.|+|++ ||+.+
T Consensus 109 ~----~-----~LS~G~~qrv~la-ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~------sh~~~ 172 (194)
T cd03213 109 L----R-----GLSGGERKRVSIA-LELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICS------IHQPS 172 (194)
T ss_pred h----c-----cCCHHHHHHHHHH-HHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEE------ecCch
Confidence 0 0 0000011122221 127889999999999 69999999999999998875 9999999 99986
Q ss_pred -HHHHHhcCC
Q 029421 155 -AVARLRNHP 163 (193)
Q Consensus 155 -~~~~~~d~~ 163 (193)
++..+||++
T Consensus 173 ~~~~~~~d~v 182 (194)
T cd03213 173 SEIFELFDKL 182 (194)
T ss_pred HHHHHhcCEE
Confidence 688899984
No 210
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.96 E-value=3e-29 Score=202.70 Aligned_cols=157 Identities=12% Similarity=0.176 Sum_probs=111.4
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcc-----cCCCCeEEeceEchh----hccCCceeeEEEeecCC-ccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLK-----ASNPSLKVQGFYTGE----IRQGGQRVGFEVVTLDD-RRAPLAS 70 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~-----~~~G~i~~~g~~~~~----~~~~~~~ig~~~q~~~~-~~~~~~~ 70 (193)
|+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|.++.. ....++.++|+||++.. ..+..++
T Consensus 45 l~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~en 124 (271)
T PRK14238 45 LDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNPFPKSIYDN 124 (271)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCccccccHHHH
Confidence 5789999999999999999999999999997 699999999987632 12335679999998621 1355555
Q ss_pred ccCCCCCCCCCCcccceeeehhhhhhhc------------ccccc------------cCCCCCEEEEecC-CCccccccc
Q 029421 71 INASSPESYRWPTVGRYKVDVASFEAIA------------LPELQ------------VGADTDLFVIDEV-GKMELFSSS 125 (193)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~------------l~~~~------------l~~~p~llllDEp-~~LD~~~~~ 125 (193)
+.+..................+.++.++ ...++ ++.+|+++||||| ++||+.++.
T Consensus 125 i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~ 204 (271)
T PRK14238 125 VTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTL 204 (271)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHH
Confidence 4321110000000000011112222221 11122 7899999999999 699999999
Q ss_pred hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+.++++.+.++.|||++ |||++++.++||++
T Consensus 205 ~l~~~l~~~~~~~tiiiv------sH~~~~i~~~~d~i 236 (271)
T PRK14238 205 KVEELVQELKKDYSIIIV------THNMQQAARISDKT 236 (271)
T ss_pred HHHHHHHHHHcCCEEEEE------EcCHHHHHHhCCEE
Confidence 999999988768999999 99999999999984
No 211
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.96 E-value=4.2e-29 Score=217.41 Aligned_cols=157 Identities=13% Similarity=0.142 Sum_probs=116.9
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhccc--CCCCeEEeceEchhhc---cCCceeeEEEeec--CCcccccccccC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKA--SNPSLKVQGFYTGEIR---QGGQRVGFEVVTL--DDRRAPLASINA 73 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~--~~G~i~~~g~~~~~~~---~~~~~ig~~~q~~--~~~~~~~~~~~~ 73 (193)
|++++|++++|+||||||||||+++|+|+++| ++|+|.++|.++.... ..++.+||+||++ .+..++.+++.+
T Consensus 22 l~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~ 101 (500)
T TIGR02633 22 LEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFL 101 (500)
T ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCCCcHHHHHHh
Confidence 57899999999999999999999999999987 7999999998864211 1235699999986 233455565443
Q ss_pred CCCCCC---CCCcccceeeehhhhhhhccccc---------c------------cCCCCCEEEEecC-CCccccccchHH
Q 029421 74 SSPESY---RWPTVGRYKVDVASFEAIALPEL---------Q------------VGADTDLFVIDEV-GKMELFSSSFFP 128 (193)
Q Consensus 74 ~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~---------~------------l~~~p~llllDEp-~~LD~~~~~~~~ 128 (193)
...... ............+.++.+++... + ++.+|+++||||| ++||+.++..+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~ 181 (500)
T TIGR02633 102 GNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILL 181 (500)
T ss_pred hccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Confidence 221100 00111111223455666665421 1 7889999999999 699999999999
Q ss_pred HHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 129 AVLRILES-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 129 ~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
++++.+++ |.|||++ |||++++..+||++
T Consensus 182 ~~l~~l~~~g~tviii------tHd~~~~~~~~d~i 211 (500)
T TIGR02633 182 DIIRDLKAHGVACVYI------SHKLNEVKAVCDTI 211 (500)
T ss_pred HHHHHHHhCCCEEEEE------eCcHHHHHHhCCEE
Confidence 99998876 9999999 99999999999983
No 212
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.96 E-value=3.6e-29 Score=197.12 Aligned_cols=153 Identities=18% Similarity=0.223 Sum_probs=112.5
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecC-CcccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLD-DRRAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~-~~~~~~~~~~~~~~~ 77 (193)
|+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ...+..++|++|++. ...+..+++.+...
T Consensus 28 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~- 106 (225)
T PRK10247 28 FSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQ- 106 (225)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEEecccccccccHHHHHHhHHh-
Confidence 67899999999999999999999999999999999999999876322 123467899999862 12355555433111
Q ss_pred CCCCCcccceeeehhhhhhhcccc-c--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh
Q 029421 78 SYRWPTVGRYKVDVASFEAIALPE-L--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE 135 (193)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~l~~-~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~ 135 (193)
... .........+.++.+++.. . + ++.+|+++||||| ++||+.++..+.++++.+.
T Consensus 107 ~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 184 (225)
T PRK10247 107 IRN--QQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYV 184 (225)
T ss_pred hcC--CChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 000 0001122335566666631 1 1 8899999999999 6999999999999998874
Q ss_pred -C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 136 -S-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 136 -~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
+ |.|||++ ||+.+.+. .||++
T Consensus 185 ~~~~~tvii~------sh~~~~~~-~~d~i 207 (225)
T PRK10247 185 REQNIAVLWV------THDKDEIN-HADKV 207 (225)
T ss_pred HhcCCEEEEE------ECChHHHH-hCCEE
Confidence 4 8999999 99998885 68873
No 213
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.96 E-value=3.5e-29 Score=217.88 Aligned_cols=157 Identities=10% Similarity=0.106 Sum_probs=116.6
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhccc-CCCCeEEeceEchh---hccCCceeeEEEeec-----CCcccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKA-SNPSLKVQGFYTGE---IRQGGQRVGFEVVTL-----DDRRAPLASI 71 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~-~~G~i~~~g~~~~~---~~~~~~~ig~~~q~~-----~~~~~~~~~~ 71 (193)
|+|.+|++++|+||||||||||+|+|+|+++| ++|+|.++|+++.. ....++++||++|++ .+..++.+++
T Consensus 281 ~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~ 360 (500)
T TIGR02633 281 FSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNI 360 (500)
T ss_pred eEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHh
Confidence 67899999999999999999999999999985 89999999987632 122345799999984 2223444544
Q ss_pred cCCCCC-CCC---CCcccceeeehhhhhhhcccc-c--------c------------cCCCCCEEEEecC-CCccccccc
Q 029421 72 NASSPE-SYR---WPTVGRYKVDVASFEAIALPE-L--------Q------------VGADTDLFVIDEV-GKMELFSSS 125 (193)
Q Consensus 72 ~~~~~~-~~~---~~~~~~~~~~~~~l~~~~l~~-~--------~------------l~~~p~llllDEp-~~LD~~~~~ 125 (193)
.+.... ... ...........++++.+++.. . + ++.+|++|||||| ++||+.++.
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~ 440 (500)
T TIGR02633 361 TLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKY 440 (500)
T ss_pred cchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHH
Confidence 332110 000 011111123445667777642 1 1 7889999999999 699999999
Q ss_pred hHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 126 FFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 126 ~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+.++++.+++ |.|||++ |||++++.++||++
T Consensus 441 ~l~~~l~~l~~~g~tviiv------sHd~~~~~~~~d~v 473 (500)
T TIGR02633 441 EIYKLINQLAQEGVAIIVV------SSELAEVLGLSDRV 473 (500)
T ss_pred HHHHHHHHHHhCCCEEEEE------CCCHHHHHHhCCEE
Confidence 99999998876 9999999 99999999999983
No 214
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.96 E-value=5.3e-29 Score=216.81 Aligned_cols=157 Identities=9% Similarity=0.140 Sum_probs=117.5
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh---ccCCceeeEEEeecC-----Cccccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI---RQGGQRVGFEVVTLD-----DRRAPLASIN 72 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~---~~~~~~ig~~~q~~~-----~~~~~~~~~~ 72 (193)
|+|.+|++++|+||||||||||+|+|+|+++|++|+|.++|+++... ...++++||++|++. ...++.+++.
T Consensus 273 l~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~ 352 (501)
T PRK10762 273 FTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMS 352 (501)
T ss_pred EEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhh
Confidence 57899999999999999999999999999999999999999876321 122456999999851 2345555543
Q ss_pred CCCCCCC-C----CCcccceeeehhhhhhhccc-ccc--------------------cCCCCCEEEEecC-CCccccccc
Q 029421 73 ASSPESY-R----WPTVGRYKVDVASFEAIALP-ELQ--------------------VGADTDLFVIDEV-GKMELFSSS 125 (193)
Q Consensus 73 ~~~~~~~-~----~~~~~~~~~~~~~l~~~~l~-~~~--------------------l~~~p~llllDEp-~~LD~~~~~ 125 (193)
+...... . ...........++++.+++. ... ++.+|+++||||| ++||+.++.
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~ 432 (501)
T PRK10762 353 LTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKK 432 (501)
T ss_pred hhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHH
Confidence 3211000 0 00011112344566777773 221 7889999999999 699999999
Q ss_pred hHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 126 FFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 126 ~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+.++++.+++ |.|||++ |||++++.++||++
T Consensus 433 ~l~~~l~~~~~~g~tviiv------tHd~~~~~~~~d~v 465 (501)
T PRK10762 433 EIYQLINQFKAEGLSIILV------SSEMPEVLGMSDRI 465 (501)
T ss_pred HHHHHHHHHHHCCCEEEEE------cCCHHHHHhhCCEE
Confidence 99999999875 9999999 99999999999983
No 215
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.96 E-value=3.3e-29 Score=198.56 Aligned_cols=155 Identities=14% Similarity=0.126 Sum_probs=109.8
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecC-CcccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLD-DRRAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~-~~~~~~~~~~~~~~~ 77 (193)
|++++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ...++.++|+||++. ...++.+++.+....
T Consensus 23 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~ 102 (237)
T cd03252 23 LRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPG 102 (237)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhccchHHHHhhccCCC
Confidence 57899999999999999999999999999999999999999876422 123467999999862 123455554332110
Q ss_pred CCCCCccc---ceeeehhhhhhh--cc--------cccc------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421 78 SYRWPTVG---RYKVDVASFEAI--AL--------PELQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVL 131 (193)
Q Consensus 78 ~~~~~~~~---~~~~~~~~l~~~--~l--------~~~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll 131 (193)
. ...... ......+.++.+ ++ ..++ ++.+|+++||||| ++||+.++..+.+++
T Consensus 103 ~-~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l 181 (237)
T cd03252 103 M-SMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNM 181 (237)
T ss_pred C-CHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 0 000000 000111222222 11 1222 7899999999999 699999999999999
Q ss_pred HHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 132 RILESNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 132 ~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
+.+.+|.|||++ |||++++. .||++
T Consensus 182 ~~~~~~~tiii~------sH~~~~~~-~~d~v 206 (237)
T cd03252 182 HDICAGRTVIII------AHRLSTVK-NADRI 206 (237)
T ss_pred HHhcCCCEEEEE------eCCHHHHH-hCCEE
Confidence 988668999999 99999885 58883
No 216
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=4.4e-29 Score=199.54 Aligned_cols=156 Identities=15% Similarity=0.204 Sum_probs=111.0
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccC-----CCCeEEeceEchh----hccCCceeeEEEeecC--Ccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKAS-----NPSLKVQGFYTGE----IRQGGQRVGFEVVTLD--DRRAPLA 69 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~-----~G~i~~~g~~~~~----~~~~~~~ig~~~q~~~--~~~~~~~ 69 (193)
|+|++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++.. ....+..++|++|++. ...+..+
T Consensus 25 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e 104 (252)
T PRK14272 25 LDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFD 104 (252)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCccCcCCCHHH
Confidence 578999999999999999999999999999874 8999999988642 1133567999999862 2235555
Q ss_pred cccCCCCCCCCCCccc-ceeeehhhhhhhcc------------cccc------------cCCCCCEEEEecC-CCccccc
Q 029421 70 SINASSPESYRWPTVG-RYKVDVASFEAIAL------------PELQ------------VGADTDLFVIDEV-GKMELFS 123 (193)
Q Consensus 70 ~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~l------------~~~~------------l~~~p~llllDEp-~~LD~~~ 123 (193)
++.+.... ....... ......+.++.+++ ..++ ++.+|+++||||| ++||+.+
T Consensus 105 nl~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~ 183 (252)
T PRK14272 105 NVVAGLKL-AGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPAS 183 (252)
T ss_pred HHHHHHHh-cCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHH
Confidence 54321110 0000000 00111111111211 1122 8899999999999 6999999
Q ss_pred cchHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 124 SSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 124 ~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
+..+.++++.++++.|||++ ||+.+.+..+||++
T Consensus 184 ~~~l~~~l~~~~~~~tiii~------sH~~~~~~~~~d~i 217 (252)
T PRK14272 184 TARIEDLMTDLKKVTTIIIV------THNMHQAARVSDTT 217 (252)
T ss_pred HHHHHHHHHHHhcCCeEEEE------eCCHHHHHHhCCEE
Confidence 99999999988668999999 99999999999984
No 217
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=4.6e-29 Score=199.13 Aligned_cols=156 Identities=15% Similarity=0.179 Sum_probs=111.5
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhccc-----CCCCeEEeceEchh---hccCCceeeEEEeecCC-cccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKA-----SNPSLKVQGFYTGE---IRQGGQRVGFEVVTLDD-RRAPLASI 71 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~-----~~G~i~~~g~~~~~---~~~~~~~ig~~~q~~~~-~~~~~~~~ 71 (193)
|+|++|++++|+||||||||||+++|+|+++| ++|+|.++|.++.. ....++.++|++|++.. ..+..+++
T Consensus 24 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~l 103 (249)
T PRK14253 24 LPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFPMSIYENV 103 (249)
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCcCcccHHHHH
Confidence 57899999999999999999999999999986 58999999987631 22335679999998621 13445554
Q ss_pred cCCCCCCCCCCcc-cceeeehhhhhhhcc------------cccc------------cCCCCCEEEEecC-CCccccccc
Q 029421 72 NASSPESYRWPTV-GRYKVDVASFEAIAL------------PELQ------------VGADTDLFVIDEV-GKMELFSSS 125 (193)
Q Consensus 72 ~~~~~~~~~~~~~-~~~~~~~~~l~~~~l------------~~~~------------l~~~p~llllDEp-~~LD~~~~~ 125 (193)
.+..... ..... .......+.++.+++ ..++ ++.+|+++||||| ++||+.++.
T Consensus 104 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~ 182 (249)
T PRK14253 104 AYGLRAQ-GIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATH 182 (249)
T ss_pred HhHHHhc-CCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHH
Confidence 3321100 00000 000111222232222 1121 7899999999999 699999999
Q ss_pred hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+.++++.++++.|||++ ||+.+++..+||++
T Consensus 183 ~l~~~l~~~~~~~tii~~------sh~~~~~~~~~d~i 214 (249)
T PRK14253 183 KIEELMEELKKNYTIVIV------THSMQQARRISDRT 214 (249)
T ss_pred HHHHHHHHHhcCCeEEEE------ecCHHHHHHhCCEE
Confidence 999999998767899999 99999999999984
No 218
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.96 E-value=3.9e-29 Score=217.65 Aligned_cols=157 Identities=13% Similarity=0.107 Sum_probs=117.5
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh---hccCCceeeEEEeec-----CCccccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE---IRQGGQRVGFEVVTL-----DDRRAPLASIN 72 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~---~~~~~~~ig~~~q~~-----~~~~~~~~~~~ 72 (193)
|+|++|++++|+||||||||||+|+|+|+++|++|+|.++|+++.. ....++.++|++|++ .+..+..+++.
T Consensus 274 l~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~ 353 (501)
T PRK11288 274 FSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNIN 353 (501)
T ss_pred EEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhc
Confidence 5789999999999999999999999999999999999999987632 112245789999974 22345555543
Q ss_pred CCCCCCC---C-C-Ccccceeeehhhhhhhccc-cc--------c------------cCCCCCEEEEecC-CCccccccc
Q 029421 73 ASSPESY---R-W-PTVGRYKVDVASFEAIALP-EL--------Q------------VGADTDLFVIDEV-GKMELFSSS 125 (193)
Q Consensus 73 ~~~~~~~---~-~-~~~~~~~~~~~~l~~~~l~-~~--------~------------l~~~p~llllDEp-~~LD~~~~~ 125 (193)
+...... . + ..........+.++.+++. +. + ++.+|++|||||| +|||+.++.
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~ 433 (501)
T PRK11288 354 ISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKH 433 (501)
T ss_pred cccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHH
Confidence 3211100 0 0 1111112344567777763 22 1 7889999999999 699999999
Q ss_pred hHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 126 FFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 126 ~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+.++++.+++ |.|||++ |||++++.++||++
T Consensus 434 ~l~~~l~~l~~~g~tviiv------sHd~~~~~~~~d~i 466 (501)
T PRK11288 434 EIYNVIYELAAQGVAVLFV------SSDLPEVLGVADRI 466 (501)
T ss_pred HHHHHHHHHHhCCCEEEEE------CCCHHHHHhhCCEE
Confidence 99999998876 9999999 99999999999993
No 219
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.95 E-value=4.4e-29 Score=201.79 Aligned_cols=157 Identities=15% Similarity=0.121 Sum_probs=114.5
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccC--------CCCeEEeceEchhh--ccCCceeeEEEeecC--Cccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKAS--------NPSLKVQGFYTGEI--RQGGQRVGFEVVTLD--DRRAPL 68 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~--------~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~--~~~~~~ 68 (193)
|+|++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++... ...++.++|++|++. ...+..
T Consensus 22 l~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~ 101 (272)
T PRK13547 22 LRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAR 101 (272)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCCCCCCCcHH
Confidence 578999999999999999999999999999998 89999999876421 222345899999752 234555
Q ss_pred ccccCCCCCCC---CCCcccceeeehhhhhhhccccc--------c------------cC---------CCCCEEEEecC
Q 029421 69 ASINASSPESY---RWPTVGRYKVDVASFEAIALPEL--------Q------------VG---------ADTDLFVIDEV 116 (193)
Q Consensus 69 ~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~---------~~p~llllDEp 116 (193)
+++.+...... ............+.++.+++... + ++ .+|+++|||||
T Consensus 102 e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEP 181 (272)
T PRK13547 102 EIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEP 181 (272)
T ss_pred HHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCc
Confidence 55443211100 00000111223345555655432 1 55 59999999999
Q ss_pred -CCccccccchHHHHHHHHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 117 -GKMELFSSSFFPAVLRILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 117 -~~LD~~~~~~~~~ll~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
++||+.++..+.++++.+. + |.|||++ |||++.+.++||++
T Consensus 182 t~~LD~~~~~~l~~~l~~~~~~~~~tviii------sH~~~~~~~~~d~i 225 (272)
T PRK13547 182 TAALDLAHQHRLLDTVRRLARDWNLGVLAI------VHDPNLAARHADRI 225 (272)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEE------ECCHHHHHHhCCEE
Confidence 6999999999999998875 4 8999999 99999999999984
No 220
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.95 E-value=2.8e-29 Score=241.60 Aligned_cols=156 Identities=17% Similarity=0.147 Sum_probs=119.4
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEch-hhccCCceeeEEEeec--CCcccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTG-EIRQGGQRVGFEVVTL--DDRRAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~-~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~~ 77 (193)
|+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++. .....++.+||+||+. .+..++.+++.+...
T Consensus 1960 f~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~- 2038 (2272)
T TIGR01257 1960 VGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYAR- 2038 (2272)
T ss_pred EEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHH-
Confidence 578999999999999999999999999999999999999999873 2223456799999975 334566665433111
Q ss_pred CCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHHhC
Q 029421 78 SYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILES 136 (193)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~ 136 (193)
....+.........+.++.+++.+.. ++.+|++++|||| +|||+.++..++++++.+++
T Consensus 2039 l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~ 2118 (2272)
T TIGR01257 2039 LRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIR 2118 (2272)
T ss_pred hcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh
Confidence 01111111112233556666664321 7899999999999 69999999999999998865
Q ss_pred -CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 137 -NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 137 -g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
|+|||++ ||++++++++||++
T Consensus 2119 ~g~TIILt------TH~mee~e~lcDrV 2140 (2272)
T TIGR01257 2119 EGRAVVLT------SHSMEECEALCTRL 2140 (2272)
T ss_pred CCCEEEEE------eCCHHHHHHhCCEE
Confidence 9999999 99999999999984
No 221
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=3.7e-29 Score=200.93 Aligned_cols=157 Identities=13% Similarity=0.195 Sum_probs=112.4
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhccc-----CCCCeEEeceEchhh----ccCCceeeEEEeecCC-ccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKA-----SNPSLKVQGFYTGEI----RQGGQRVGFEVVTLDD-RRAPLAS 70 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~-----~~G~i~~~g~~~~~~----~~~~~~ig~~~q~~~~-~~~~~~~ 70 (193)
|+|++|++++|+|+||||||||+++|+|+++| ++|+|.++|+++... ...+..++|++|++.. ..+..++
T Consensus 28 l~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~en 107 (259)
T PRK14260 28 MDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYEN 107 (259)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecccccCCccHHHH
Confidence 57899999999999999999999999999985 489999999876321 2234579999998621 2455555
Q ss_pred ccCCCCCCCCCCcccceeeehhhhhhhccc------------ccc------------cCCCCCEEEEecC-CCccccccc
Q 029421 71 INASSPESYRWPTVGRYKVDVASFEAIALP------------ELQ------------VGADTDLFVIDEV-GKMELFSSS 125 (193)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------------~~~------------l~~~p~llllDEp-~~LD~~~~~ 125 (193)
+.+..................+.++.+++. .++ ++.+|+++||||| ++||+.++.
T Consensus 108 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~ 187 (259)
T PRK14260 108 VAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATM 187 (259)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHH
Confidence 432211000001001111122333433331 111 7899999999999 699999999
Q ss_pred hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+.++++.++++.|||++ ||+++++..+||++
T Consensus 188 ~l~~~l~~~~~~~tiii~------tH~~~~i~~~~d~i 219 (259)
T PRK14260 188 KVEELIHSLRSELTIAIV------THNMQQATRVSDFT 219 (259)
T ss_pred HHHHHHHHHhcCCEEEEE------eCCHHHHHHhcCeE
Confidence 999999988667899999 99999999999983
No 222
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.95 E-value=6.1e-29 Score=211.75 Aligned_cols=157 Identities=12% Similarity=0.167 Sum_probs=124.7
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEch---hhccCCceeeEEEeec--CCcccccccccCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTG---EIRQGGQRVGFEVVTL--DDRRAPLASINASS 75 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~---~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~ 75 (193)
|++.+||+++|+|.||||||||+|+|+|.++|++|+|.++|+... ........|+.++|++ .+.+++.+|+.+..
T Consensus 29 l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgr 108 (500)
T COG1129 29 LTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGR 108 (500)
T ss_pred eEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEeechhccCCccHHHHhhccc
Confidence 678999999999999999999999999999999999999999863 2223346688999987 57788888876654
Q ss_pred CCCCC---CCcccceeeehhhhhhhccc--------ccc------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421 76 PESYR---WPTVGRYKVDVASFEAIALP--------ELQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVL 131 (193)
Q Consensus 76 ~~~~~---~~~~~~~~~~~~~l~~~~l~--------~~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll 131 (193)
..... ...........+.+.++++. +++ +..+++++||||| ++|+......+.+++
T Consensus 109 e~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~i 188 (500)
T COG1129 109 EPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLI 188 (500)
T ss_pred ccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 32221 11122233445566666552 111 7789999999999 599999999999999
Q ss_pred HHHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 132 RILES-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 132 ~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
+.+++ |.+||++ ||.++++.++||++
T Consensus 189 r~Lk~~Gv~ii~I------SHrl~Ei~~i~Dri 215 (500)
T COG1129 189 RRLKAQGVAIIYI------SHRLDEVFEIADRI 215 (500)
T ss_pred HHHHhCCCEEEEE------cCcHHHHHHhcCEE
Confidence 99987 9999999 99999999999994
No 223
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=4.3e-29 Score=199.61 Aligned_cols=157 Identities=11% Similarity=0.176 Sum_probs=113.6
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcc-----cCCCCeEEeceEchhh----ccCCceeeEEEeecCC-ccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLK-----ASNPSLKVQGFYTGEI----RQGGQRVGFEVVTLDD-RRAPLAS 70 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~-----~~~G~i~~~g~~~~~~----~~~~~~ig~~~q~~~~-~~~~~~~ 70 (193)
|+|.+|++++|+||||||||||+++|+|+.+ |++|+|.++|+++... ...++.++|+||++.. ..+..++
T Consensus 26 ~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~n 105 (251)
T PRK14244 26 LDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPKSIYDN 105 (251)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCcccccCCHHHH
Confidence 5789999999999999999999999999986 4799999999876422 1235679999998621 1244555
Q ss_pred ccCCCCCCCCC-Ccccceeeehhhhhhhcccc------------cc------------cCCCCCEEEEecC-CCcccccc
Q 029421 71 INASSPESYRW-PTVGRYKVDVASFEAIALPE------------LQ------------VGADTDLFVIDEV-GKMELFSS 124 (193)
Q Consensus 71 ~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~------------~~------------l~~~p~llllDEp-~~LD~~~~ 124 (193)
+.+........ ..........+.++.+++.. ++ ++.+|+++||||| ++||+.++
T Consensus 106 i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~ 185 (251)
T PRK14244 106 VAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVAT 185 (251)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHH
Confidence 43221000000 00011112234455555532 11 7899999999999 69999999
Q ss_pred chHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 125 SFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 125 ~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
..+.++++.+++|.|||++ ||+++++.++||++
T Consensus 186 ~~l~~~l~~~~~~~tiiii------sH~~~~~~~~~d~i 218 (251)
T PRK14244 186 NVIENLIQELKKNFTIIVV------THSMKQAKKVSDRV 218 (251)
T ss_pred HHHHHHHHHHhcCCeEEEE------eCCHHHHHhhcCEE
Confidence 9999999888668999999 99999999999984
No 224
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.95 E-value=3.9e-29 Score=198.28 Aligned_cols=155 Identities=12% Similarity=0.153 Sum_probs=109.1
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecC-CcccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLD-DRRAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~-~~~~~~~~~~~~~~~ 77 (193)
|++++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ...++.++|++|++. ...+..+++.+....
T Consensus 24 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~ 103 (238)
T cd03249 24 LTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPD 103 (238)
T ss_pred EEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhhhhHHHHhhccCCC
Confidence 57899999999999999999999999999999999999999876422 122456999999762 123445554332111
Q ss_pred CCCCCcccc---eeeehhhhhhh--cc--------cccc------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421 78 SYRWPTVGR---YKVDVASFEAI--AL--------PELQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVL 131 (193)
Q Consensus 78 ~~~~~~~~~---~~~~~~~l~~~--~l--------~~~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll 131 (193)
. ....... .....+.+..+ ++ ..++ ++.+|+++||||| ++||+.++..+.+++
T Consensus 104 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l 182 (238)
T cd03249 104 A-TDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEAL 182 (238)
T ss_pred C-CHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHH
Confidence 0 0000000 00011111111 11 1122 7899999999999 699999999999999
Q ss_pred HHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 132 RILESNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 132 ~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
+.+++|.|||++ ||+++++. +||++
T Consensus 183 ~~~~~g~~vi~~------sh~~~~~~-~~d~v 207 (238)
T cd03249 183 DRAMKGRTTIVI------AHRLSTIR-NADLI 207 (238)
T ss_pred HHhcCCCEEEEE------eCCHHHHh-hCCEE
Confidence 887678999999 99999886 79984
No 225
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=7e-29 Score=198.58 Aligned_cols=157 Identities=12% Similarity=0.161 Sum_probs=112.2
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcc--c---CCCCeEEeceEchhh----ccCCceeeEEEeecCC-ccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLK--A---SNPSLKVQGFYTGEI----RQGGQRVGFEVVTLDD-RRAPLAS 70 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~--~---~~G~i~~~g~~~~~~----~~~~~~ig~~~q~~~~-~~~~~~~ 70 (193)
|++++|++++|+||||||||||+++|+|+++ | ++|+|.++|.++... ...++.++|++|++.. ..++.++
T Consensus 27 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~en 106 (253)
T PRK14261 27 ISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPKSIYEN 106 (253)
T ss_pred EEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCccCcccHHHH
Confidence 5789999999999999999999999999975 3 489999999886422 2335679999998621 1355555
Q ss_pred ccCCCCCCCCCCcccceeeehhhhhhhccc------------ccc------------cCCCCCEEEEecC-CCccccccc
Q 029421 71 INASSPESYRWPTVGRYKVDVASFEAIALP------------ELQ------------VGADTDLFVIDEV-GKMELFSSS 125 (193)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------------~~~------------l~~~p~llllDEp-~~LD~~~~~ 125 (193)
+.+..................+.++.+++. .++ ++.+|+++||||| +|||+.++.
T Consensus 107 i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~ 186 (253)
T PRK14261 107 VAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATA 186 (253)
T ss_pred HHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 443211100000000011122333333331 111 8899999999999 699999999
Q ss_pred hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+.++++.++++.|||++ ||+.+.+.++||++
T Consensus 187 ~l~~~l~~~~~~~tvii~------sh~~~~~~~~~d~v 218 (253)
T PRK14261 187 KIEDLIEDLKKEYTVIIV------THNMQQAARVSDYT 218 (253)
T ss_pred HHHHHHHHHhhCceEEEE------EcCHHHHHhhCCEE
Confidence 999999988767899999 99999999999984
No 226
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.95 E-value=2.7e-29 Score=194.10 Aligned_cols=145 Identities=18% Similarity=0.228 Sum_probs=106.0
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh-ccCCceeeEEEeecC--CcccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI-RQGGQRVGFEVVTLD--DRRAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~-~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~~ 77 (193)
|+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++... ...++.++|++|+.. +..+..+++.+...
T Consensus 21 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~- 99 (198)
T TIGR01189 21 FTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSALENLHFWAA- 99 (198)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEeccCcccccCCcHHHHHHHHHH-
Confidence 57899999999999999999999999999999999999999876322 223467899998652 22445555432111
Q ss_pred CCCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHHHhC
Q 029421 78 SYRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILES 136 (193)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~ 136 (193)
... .......+.++.+++... + ++.+|++++|||| ++||+.++..+.+++..+++
T Consensus 100 ~~~----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 175 (198)
T TIGR01189 100 IHG----GAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLA 175 (198)
T ss_pred HcC----CcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh
Confidence 000 011123345555555422 1 7899999999999 69999999999999988755
Q ss_pred -CCcEEEEecCCCCCCChhHH
Q 029421 137 -NIPVLASIPAPKSGRDIPAV 156 (193)
Q Consensus 137 -g~tvl~~~~~~~~tHd~~~~ 156 (193)
|.|+|++ ||+...+
T Consensus 176 ~~~tii~~------sH~~~~~ 190 (198)
T TIGR01189 176 RGGIVLLT------THQDLGL 190 (198)
T ss_pred CCCEEEEE------Ecccccc
Confidence 8999999 8986433
No 227
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=5.2e-29 Score=196.44 Aligned_cols=155 Identities=14% Similarity=0.203 Sum_probs=108.7
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecC-CcccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLD-DRRAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~-~~~~~~~~~~~~~~~ 77 (193)
|++++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ...++.++|++|++. ...+..+++.+....
T Consensus 24 l~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~~~~~~~~ 103 (229)
T cd03254 24 FSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPN 103 (229)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhhHHHHHHhccCCC
Confidence 57899999999999999999999999999999999999999876432 223566999999762 112444544332111
Q ss_pred CCCCCcccc---eeeehhhhhhh--cc--------cccc------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421 78 SYRWPTVGR---YKVDVASFEAI--AL--------PELQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVL 131 (193)
Q Consensus 78 ~~~~~~~~~---~~~~~~~l~~~--~l--------~~~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll 131 (193)
. ....... .....+.++.+ ++ ..++ ++.+|+++||||| ++||+.++..+.+++
T Consensus 104 ~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l 182 (229)
T cd03254 104 A-TDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEAL 182 (229)
T ss_pred C-CHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHH
Confidence 0 0000000 00001111111 11 1222 8899999999999 699999999999999
Q ss_pred HHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 132 RILESNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 132 ~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
+.+++|.|||++ ||+.+.+. .||++
T Consensus 183 ~~~~~~~tii~~------sh~~~~~~-~~d~i 207 (229)
T cd03254 183 EKLMKGRTSIII------AHRLSTIK-NADKI 207 (229)
T ss_pred HHhcCCCEEEEE------ecCHHHHh-hCCEE
Confidence 888668999999 99998875 48873
No 228
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.95 E-value=6.4e-29 Score=216.68 Aligned_cols=156 Identities=13% Similarity=0.162 Sum_probs=114.8
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc---cCCceeeEEEeec-----CCccccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR---QGGQRVGFEVVTL-----DDRRAPLASIN 72 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~---~~~~~ig~~~q~~-----~~~~~~~~~~~ 72 (193)
|+|++|++++|+||||||||||+|+|+|+++|++|+|.++|.++.... ..+..++|+||++ ++..++.+++.
T Consensus 284 l~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~ 363 (510)
T PRK15439 284 LEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVC 363 (510)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHH
Confidence 578999999999999999999999999999999999999998763211 1235689999863 22233444432
Q ss_pred CCC-CC-CCCCCcccceeeehhhhhhhccc-ccc--------------------cCCCCCEEEEecC-CCccccccchHH
Q 029421 73 ASS-PE-SYRWPTVGRYKVDVASFEAIALP-ELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFP 128 (193)
Q Consensus 73 ~~~-~~-~~~~~~~~~~~~~~~~l~~~~l~-~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~ 128 (193)
... .. ..............++++.+++. ... ++.+|++|||||| +|||+.++..+.
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~ 443 (510)
T PRK15439 364 ALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIY 443 (510)
T ss_pred hhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHH
Confidence 110 00 00000111112234566677764 221 7889999999999 699999999999
Q ss_pred HHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcC
Q 029421 129 AVLRILES-NIPVLASIPAPKSGRDIPAVARLRNH 162 (193)
Q Consensus 129 ~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~ 162 (193)
++++.+++ |.|||++ |||++++.++||+
T Consensus 444 ~~l~~l~~~g~tiIiv------sHd~~~i~~~~d~ 472 (510)
T PRK15439 444 QLIRSIAAQNVAVLFI------SSDLEEIEQMADR 472 (510)
T ss_pred HHHHHHHhCCCEEEEE------CCCHHHHHHhCCE
Confidence 99999876 9999999 9999999999998
No 229
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=6.3e-29 Score=202.27 Aligned_cols=157 Identities=11% Similarity=0.135 Sum_probs=111.9
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcc-----cCCCCeEEeceEchhh----ccCCceeeEEEeecCC-ccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLK-----ASNPSLKVQGFYTGEI----RQGGQRVGFEVVTLDD-RRAPLAS 70 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~-----~~~G~i~~~g~~~~~~----~~~~~~ig~~~q~~~~-~~~~~~~ 70 (193)
|+|.+|++++|+||||||||||+++|+|+.+ |++|+|.++|.++... ...++.++|++|++.. ..+..++
T Consensus 60 l~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~en 139 (286)
T PRK14275 60 ADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPFPKSIFDN 139 (286)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCCCCccCHHHH
Confidence 5789999999999999999999999999864 4999999999876321 1235679999998621 1255555
Q ss_pred ccCCCCCCCCCCcccceeeehhhhhhhccc------------ccc------------cCCCCCEEEEecC-CCccccccc
Q 029421 71 INASSPESYRWPTVGRYKVDVASFEAIALP------------ELQ------------VGADTDLFVIDEV-GKMELFSSS 125 (193)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------------~~~------------l~~~p~llllDEp-~~LD~~~~~ 125 (193)
+.+..................+.++.+++. .++ ++.+|+++||||| ++||+.++.
T Consensus 140 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~ 219 (286)
T PRK14275 140 IAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATA 219 (286)
T ss_pred HHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHH
Confidence 443211000000000011122333333321 111 8899999999999 699999999
Q ss_pred hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+.++++.++.+.|||++ |||.+++.++||++
T Consensus 220 ~l~~~L~~~~~~~tvIiv------sH~~~~~~~~~d~i 251 (286)
T PRK14275 220 KIEDLIQELRGSYTIMIV------THNMQQASRVSDYT 251 (286)
T ss_pred HHHHHHHHHhcCCeEEEE------eCCHHHHHHhCCEE
Confidence 999999888667899999 99999999999984
No 230
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=2.2e-28 Score=192.96 Aligned_cols=149 Identities=18% Similarity=0.215 Sum_probs=118.4
Q ss_pred cccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh------hccCCceeeEEEeec--CCcccccccccC
Q 029421 2 AAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE------IRQGGQRVGFEVVTL--DDRRAPLASINA 73 (193)
Q Consensus 2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~------~~~~~~~ig~~~q~~--~~~~~~~~~~~~ 73 (193)
+.+..-+++|.|+||||||||+++|+|+.+|+.|.|.++|..... .+..++++||+||+. ++.+++..|+.+
T Consensus 20 ~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgNL~Y 99 (352)
T COG4148 20 TLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRY 99 (352)
T ss_pred cCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecchhh
Confidence 334436999999999999999999999999999999999987521 234578999999987 677777777665
Q ss_pred CCCCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421 74 SSPESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLR 132 (193)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~ 132 (193)
..... ......+....+|+.++. |+..|++|+|||| ++||..-+.++.-+++
T Consensus 100 G~~~~-------~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylE 172 (352)
T COG4148 100 GMWKS-------MRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLE 172 (352)
T ss_pred hhccc-------chHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHH
Confidence 43211 111122344455555442 8899999999999 8999999999999999
Q ss_pred HHhC--CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 133 ILES--NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 133 ~l~~--g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+.+ +..|++| ||.++++.++||++
T Consensus 173 RL~~e~~IPIlYV------SHS~~Ev~RLAd~v 199 (352)
T COG4148 173 RLRDEINIPILYV------SHSLDEVLRLADRV 199 (352)
T ss_pred HHHHhcCCCEEEE------ecCHHHHHhhhheE
Confidence 8865 9999999 99999999999994
No 231
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.95 E-value=9.1e-29 Score=194.07 Aligned_cols=147 Identities=13% Similarity=0.209 Sum_probs=107.6
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh--hccCCceeeEEEeecC-CcccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE--IRQGGQRVGFEVVTLD-DRRAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~--~~~~~~~ig~~~q~~~-~~~~~~~~~~~~~~~ 77 (193)
|++++|++++|+||||||||||+++|+|+++|++|+|.++|.++.. ....++.++|++|++. ...+..+++.....
T Consensus 25 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~- 103 (221)
T cd03244 25 FSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGE- 103 (221)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEEECCCCccccchHHHHhCcCCC-
Confidence 5789999999999999999999999999999999999999988643 2233567999999863 12244454432110
Q ss_pred CCCCCcccceeeehhhhhhhcc-------------------cccc------------cCCCCCEEEEecC-CCccccccc
Q 029421 78 SYRWPTVGRYKVDVASFEAIAL-------------------PELQ------------VGADTDLFVIDEV-GKMELFSSS 125 (193)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~l-------------------~~~~------------l~~~p~llllDEp-~~LD~~~~~ 125 (193)
... ....+.++.+++ ..++ ++.+|+++||||| ++||+.++.
T Consensus 104 ----~~~---~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~ 176 (221)
T cd03244 104 ----YSD---EELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDA 176 (221)
T ss_pred ----CCH---HHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHH
Confidence 000 001111111111 1111 8899999999999 699999999
Q ss_pred hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcC
Q 029421 126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNH 162 (193)
Q Consensus 126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~ 162 (193)
.+.++++.+.++.|||++ ||+.+++.. ||+
T Consensus 177 ~l~~~l~~~~~~~tii~~------sh~~~~~~~-~d~ 206 (221)
T cd03244 177 LIQKTIREAFKDCTVLTI------AHRLDTIID-SDR 206 (221)
T ss_pred HHHHHHHHhcCCCEEEEE------eCCHHHHhh-CCE
Confidence 999999988668899999 999988865 877
No 232
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=6.5e-29 Score=199.31 Aligned_cols=157 Identities=16% Similarity=0.204 Sum_probs=112.5
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceE------chh--hccCCceeeEEEeecC--Cccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFY------TGE--IRQGGQRVGFEVVTLD--DRRAPLAS 70 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~------~~~--~~~~~~~ig~~~q~~~--~~~~~~~~ 70 (193)
|++.+|++++|+||||||||||+++|+|+++|++|+|.++|.. ... ....+..++|++|++. +..+..++
T Consensus 31 ~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~n 110 (257)
T PRK14246 31 IKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDN 110 (257)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCccCCCCcHHHH
Confidence 5789999999999999999999999999999999888887743 211 1123467999999863 23455555
Q ss_pred ccCCCCCCCCCCcccceeeehhhhhhhcccc------------cc------------cCCCCCEEEEecC-CCccccccc
Q 029421 71 INASSPESYRWPTVGRYKVDVASFEAIALPE------------LQ------------VGADTDLFVIDEV-GKMELFSSS 125 (193)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------------~~------------l~~~p~llllDEp-~~LD~~~~~ 125 (193)
+.+..................+.++.+++.. ++ ++.+|+++||||| ++||+.++.
T Consensus 111 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~ 190 (257)
T PRK14246 111 IAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQ 190 (257)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHH
Confidence 4432111000111111112234444444421 11 8899999999999 699999999
Q ss_pred hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+.+++..++++.|||++ ||+...+..+||++
T Consensus 191 ~l~~~l~~~~~~~tiilv------sh~~~~~~~~~d~v 222 (257)
T PRK14246 191 AIEKLITELKNEIAIVIV------SHNPQQVARVADYV 222 (257)
T ss_pred HHHHHHHHHhcCcEEEEE------ECCHHHHHHhCCEE
Confidence 999999888668999999 99999999999984
No 233
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.95 E-value=5.9e-29 Score=183.28 Aligned_cols=162 Identities=20% Similarity=0.263 Sum_probs=123.0
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh--hccCCceeeEEEeecCC-cccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE--IRQGGQRVGFEVVTLDD-RRAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~--~~~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~ 77 (193)
|++.+||+++|+||||||||||+|+++.+++|++|.+.|.|+++.. ....+.+++|+.|.+.. ..++.+|+-++...
T Consensus 24 l~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVeDNlifP~~~ 103 (223)
T COG4619 24 LSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQI 103 (223)
T ss_pred eeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchhhccccchHH
Confidence 5789999999999999999999999999999999999999999753 33567889999998732 24666675554322
Q ss_pred CCCCCcccceeeehhhhhhhcccccc---------------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh
Q 029421 78 SYRWPTVGRYKVDVASFEAIALPELQ---------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE 135 (193)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~l~~~~---------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~ 135 (193)
....+ +.....+.+.++++.+.. |..-|++|+|||| +.||+.++..+.+++..+.
T Consensus 104 r~rr~---dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v 180 (223)
T COG4619 104 RNRRP---DRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYV 180 (223)
T ss_pred hccCC---ChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHh
Confidence 11111 122334556666654321 7788999999999 6999999999999888764
Q ss_pred -C-CCcEEEEecCCCCCCChhHHHHHhcCCCcEEEEeCCCCh
Q 029421 136 -S-NIPVLASIPAPKSGRDIPAVARLRNHPGATIFTLSPGNR 175 (193)
Q Consensus 136 -~-g~tvl~~~~~~~~tHd~~~~~~~~d~~~~~~~~~~~~~~ 175 (193)
+ ..+++++ |||-+++.+.+++ ++.+.++..
T Consensus 181 ~~q~vAv~Wi------THd~dqa~rha~k----~itl~~G~~ 212 (223)
T COG4619 181 REQNVAVLWI------THDKDQAIRHADK----VITLQPGHA 212 (223)
T ss_pred hhhceEEEEE------ecChHHHhhhhhe----EEEeccCcc
Confidence 4 8999999 9999998888887 344555433
No 234
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.95 E-value=1.1e-28 Score=197.45 Aligned_cols=140 Identities=19% Similarity=0.237 Sum_probs=105.2
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecCCcc----cccccccCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRR----APLASINASSP 76 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~~~----~~~~~~~~~~~ 76 (193)
|+|++|++++|+||||||||||+++|+|+++|++|+|.++| +..++|++|++.... +..++..+.
T Consensus 25 ~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~---------~~~i~~v~q~~~~~~~l~~~~~~~~~~~-- 93 (251)
T PRK09544 25 LELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG---------KLRIGYVPQKLYLDTTLPLTVNRFLRLR-- 93 (251)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC---------ccCEEEeccccccccccChhHHHHHhcc--
Confidence 57899999999999999999999999999999999999876 235899999762111 111111110
Q ss_pred CCCCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh
Q 029421 77 ESYRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE 135 (193)
Q Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~ 135 (193)
... ......+.++.+++.+. + ++.+|+++||||| ++||+.++..+.++++.+.
T Consensus 94 --~~~----~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~ 167 (251)
T PRK09544 94 --PGT----KKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLR 167 (251)
T ss_pred --ccc----cHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH
Confidence 000 01122344555554322 1 7899999999999 6999999999999998875
Q ss_pred -C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 136 -S-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 136 -~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
+ |.|||++ ||+.+++.++||++
T Consensus 168 ~~~g~tiiiv------sH~~~~i~~~~d~i 191 (251)
T PRK09544 168 RELDCAVLMV------SHDLHLVMAKTDEV 191 (251)
T ss_pred HhcCCEEEEE------ecCHHHHHHhCCEE
Confidence 4 8999999 99999999999984
No 235
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.95 E-value=5.2e-29 Score=192.15 Aligned_cols=144 Identities=14% Similarity=0.166 Sum_probs=104.4
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecC--CcccccccccCCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD--DRRAPLASINASSPES 78 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~~~ 78 (193)
|+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.... .+.++|++|++. ...++.+++.+.....
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~--~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~ 98 (195)
T PRK13541 21 ITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA--KPYCTYIGHNLGLKLEMTVFENLKFWSEIY 98 (195)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh--hhhEEeccCCcCCCccCCHHHHHHHHHHhc
Confidence 578999999999999999999999999999999999999998764322 345789888652 2344555543211100
Q ss_pred CCCCcccceeeehhhhhhhcccc--------cc------------cCCCCCEEEEecC-CCccccccchHHHHHHHHhC-
Q 029421 79 YRWPTVGRYKVDVASFEAIALPE--------LQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILES- 136 (193)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~l~~--------~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~- 136 (193)
. ......+.++.+++.. ++ ++.+|+++|+||| ++||+.++..+.++++...+
T Consensus 99 -~-----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~ 172 (195)
T PRK13541 99 -N-----SAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANS 172 (195)
T ss_pred -c-----cHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC
Confidence 0 0111223334444322 11 7899999999999 69999999999999976555
Q ss_pred CCcEEEEecCCCCCCChhHHHH
Q 029421 137 NIPVLASIPAPKSGRDIPAVAR 158 (193)
Q Consensus 137 g~tvl~~~~~~~~tHd~~~~~~ 158 (193)
|.|+|++ ||+.+.+..
T Consensus 173 ~~tiii~------sh~~~~i~~ 188 (195)
T PRK13541 173 GGIVLLS------SHLESSIKS 188 (195)
T ss_pred CCEEEEE------eCCccccch
Confidence 8999999 999876654
No 236
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.95 E-value=7e-29 Score=220.85 Aligned_cols=157 Identities=13% Similarity=0.224 Sum_probs=116.7
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEch----------h-----hcc-CCceeeEEEeec---
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTG----------E-----IRQ-GGQRVGFEVVTL--- 61 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~----------~-----~~~-~~~~ig~~~q~~--- 61 (193)
|+|++|++++|+||||||||||+|+|+|+++|++|+|.++|..+. . ... .++.+||++|++
T Consensus 37 ~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~ 116 (623)
T PRK10261 37 FSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTS 116 (623)
T ss_pred EEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEEEEEeCchhh
Confidence 678999999999999999999999999999999999999886331 0 011 134799999975
Q ss_pred -CCcccccccccCCCCCCCCCCcccceeeehhhhhhhcccc-----------cc------------cCCCCCEEEEecC-
Q 029421 62 -DDRRAPLASINASSPESYRWPTVGRYKVDVASFEAIALPE-----------LQ------------VGADTDLFVIDEV- 116 (193)
Q Consensus 62 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~------------l~~~p~llllDEp- 116 (193)
.+..++.+++.+..................++++.+++.. ++ ++.+|++||||||
T Consensus 117 l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt 196 (623)
T PRK10261 117 LNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPT 196 (623)
T ss_pred cCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 2334555554432110001111111233456677777742 11 8899999999999
Q ss_pred CCccccccchHHHHHHHHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 117 GKMELFSSSFFPAVLRILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 117 ~~LD~~~~~~~~~ll~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
++||+.++..+.++++.+. + |+|||++ |||++.+.++||++
T Consensus 197 ~~LD~~~~~~l~~ll~~l~~~~g~tvi~i------tHdl~~~~~~adri 239 (623)
T PRK10261 197 TALDVTIQAQILQLIKVLQKEMSMGVIFI------THDMGVVAEIADRV 239 (623)
T ss_pred CccCHHHHHHHHHHHHHHHHhcCCEEEEE------cCCHHHHHHhCCEE
Confidence 6999999999999999985 4 8999999 99999999999994
No 237
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.1e-28 Score=196.99 Aligned_cols=157 Identities=13% Similarity=0.164 Sum_probs=112.0
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcc-----cCCCCeEEeceEchh----hccCCceeeEEEeecCC-ccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLK-----ASNPSLKVQGFYTGE----IRQGGQRVGFEVVTLDD-RRAPLAS 70 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~-----~~~G~i~~~g~~~~~----~~~~~~~ig~~~q~~~~-~~~~~~~ 70 (193)
|+|.+|++++|+||||||||||+++|+|+.+ |++|+|.++|.++.. ....++.++|+||++.. ..+..++
T Consensus 24 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~t~~~n 103 (250)
T PRK14266 24 LDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDN 103 (250)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCccCcchHHHH
Confidence 5789999999999999999999999999874 489999999988632 12335679999998621 1245555
Q ss_pred ccCCCCCCCCCCcccceeeehhhhhhhccc------------ccc------------cCCCCCEEEEecC-CCccccccc
Q 029421 71 INASSPESYRWPTVGRYKVDVASFEAIALP------------ELQ------------VGADTDLFVIDEV-GKMELFSSS 125 (193)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------------~~~------------l~~~p~llllDEp-~~LD~~~~~ 125 (193)
+.+..................+.++.+++. .++ ++.+|+++||||| ++||+.++.
T Consensus 104 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~ 183 (250)
T PRK14266 104 VAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTT 183 (250)
T ss_pred HHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHH
Confidence 433211000000000111122333333331 122 7899999999999 699999999
Q ss_pred hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+.++++.++++.|||++ ||+.+++..+|+++
T Consensus 184 ~l~~~l~~~~~~~tiii~------sh~~~~~~~~~~~i 215 (250)
T PRK14266 184 KIEDLIHKLKEDYTIVIV------THNMQQATRVSKYT 215 (250)
T ss_pred HHHHHHHHHhcCCeEEEE------ECCHHHHHhhcCEE
Confidence 999999988668899999 99999999999884
No 238
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=1.2e-28 Score=195.16 Aligned_cols=156 Identities=14% Similarity=0.191 Sum_probs=108.9
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecC-CcccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLD-DRRAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~-~~~~~~~~~~~~~~~ 77 (193)
|+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ...++.++|++|++. ...+..+++.+....
T Consensus 22 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~ 101 (236)
T cd03253 22 FTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPD 101 (236)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhcchHHHHHhhcCCC
Confidence 57899999999999999999999999999999999999999886432 223456999999862 123455554332111
Q ss_pred CCCCCccc--ceeeehhhhhhh--cc--------cccc------------cCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421 78 SYRWPTVG--RYKVDVASFEAI--AL--------PELQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVLR 132 (193)
Q Consensus 78 ~~~~~~~~--~~~~~~~~l~~~--~l--------~~~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~ 132 (193)
........ ......+.+..+ ++ ..++ ++.+|+++||||| ++||+.++..+.+++.
T Consensus 102 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~ 181 (236)
T cd03253 102 ATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALR 181 (236)
T ss_pred CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 00000000 000011111111 11 1222 8899999999999 6999999999999998
Q ss_pred HHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 133 ILESNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 133 ~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+++|.|||++ ||+.+.+.. ||++
T Consensus 182 ~~~~~~tiii~------sh~~~~~~~-~d~~ 205 (236)
T cd03253 182 DVSKGRTTIVI------AHRLSTIVN-ADKI 205 (236)
T ss_pred HhcCCCEEEEE------cCCHHHHHh-CCEE
Confidence 87668999999 999998864 8883
No 239
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.95 E-value=4.2e-28 Score=195.22 Aligned_cols=168 Identities=16% Similarity=0.142 Sum_probs=112.4
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeec--CCcccccccccCCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTL--DDRRAPLASINASSPES 78 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~~~ 78 (193)
|+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. ++++|.. .+..+..+++.+....
T Consensus 45 ~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~-----------~~~~~~~~~~~~~tv~enl~~~~~~- 112 (264)
T PRK13546 45 LKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEV-----------SVIAISAGLSGQLTGIENIEFKMLC- 112 (264)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEE-----------eEEecccCCCCCCcHHHHHHHHHHH-
Confidence 5789999999999999999999999999999999999998852 2333322 1223444443221000
Q ss_pred CCCCcccceeeehhhhhhhcccc--------cc------------cCCCCCEEEEecC-CCccccccchHHHHHHHHhC-
Q 029421 79 YRWPTVGRYKVDVASFEAIALPE--------LQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILES- 136 (193)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~l~~--------~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~- 136 (193)
...............++.+++.. ++ ++.+|+++||||| ++||+.++..+.+++..+++
T Consensus 113 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~ 192 (264)
T PRK13546 113 MGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQ 192 (264)
T ss_pred cCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHC
Confidence 00110000011112222223221 11 7889999999999 69999999999999988865
Q ss_pred CCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHHHHHHHHHHH
Q 029421 137 NIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLKDNIYYQLTD 188 (193)
Q Consensus 137 g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~~~~~~~~~~ 188 (193)
|.|||++ ||+...+..+||++ ++.+.. .++.+++..++...+.+
T Consensus 193 g~tiIii------sH~~~~i~~~~d~i~~l~~G~i~~--~g~~~~~~~~~~~~~~~ 240 (264)
T PRK13546 193 NKTIFFV------SHNLGQVRQFCTKIAWIEGGKLKD--YGELDDVLPKYEAFLND 240 (264)
T ss_pred CCEEEEE------cCCHHHHHHHcCEEEEEECCEEEE--eCCHHHHHHHhHHHHHH
Confidence 9999999 99999999999984 344432 34566666666554444
No 240
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.1e-28 Score=199.98 Aligned_cols=157 Identities=17% Similarity=0.205 Sum_probs=113.0
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhccc-----CCCCeEEeceEchhh---ccCCceeeEEEeecCC-cccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKA-----SNPSLKVQGFYTGEI---RQGGQRVGFEVVTLDD-RRAPLASI 71 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~-----~~G~i~~~g~~~~~~---~~~~~~ig~~~q~~~~-~~~~~~~~ 71 (193)
|+|++|++++|+||||||||||+++|+|+++| ++|+|.++|.++... ...+..++|++|++.. ..+..+++
T Consensus 42 ~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~~~tv~eni 121 (276)
T PRK14271 42 MGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFPMSIMDNV 121 (276)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCccCCccHHHHH
Confidence 57899999999999999999999999999986 699999999876421 2335679999998621 14555554
Q ss_pred cCCCCCCCCCCcccceeeehhhhhhhccc------------ccc------------cCCCCCEEEEecC-CCccccccch
Q 029421 72 NASSPESYRWPTVGRYKVDVASFEAIALP------------ELQ------------VGADTDLFVIDEV-GKMELFSSSF 126 (193)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------------~~~------------l~~~p~llllDEp-~~LD~~~~~~ 126 (193)
.+..................+.++.+++. .++ ++.+|+++||||| ++||+.++..
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~ 201 (276)
T PRK14271 122 LAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEK 201 (276)
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence 33211000000000001112334444442 122 7899999999999 6999999999
Q ss_pred HHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 127 FPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 127 ~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
+.++++.++++.|||++ ||+++++..+||++
T Consensus 202 l~~~L~~~~~~~tiiiv------sH~~~~~~~~~dri 232 (276)
T PRK14271 202 IEEFIRSLADRLTVIIV------THNLAQAARISDRA 232 (276)
T ss_pred HHHHHHHHhcCCEEEEE------eCCHHHHHHhCCEE
Confidence 99999888667899999 99999999999984
No 241
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.95 E-value=1.6e-28 Score=214.74 Aligned_cols=155 Identities=16% Similarity=0.223 Sum_probs=114.1
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEe-ceE---chhh-----ccCCceeeEEEeec--CCcccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQ-GFY---TGEI-----RQGGQRVGFEVVTL--DDRRAPLA 69 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~-g~~---~~~~-----~~~~~~ig~~~q~~--~~~~~~~~ 69 (193)
|+|++|++++|+||||||||||+|+|+|+++|++|+|.++ |.. +... ...++++||+||++ .+..++.+
T Consensus 305 ~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e 384 (520)
T TIGR03269 305 LEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLD 384 (520)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHH
Confidence 5789999999999999999999999999999999999996 532 2111 12245699999975 23345555
Q ss_pred cccCCCCCCCCCCcccceeeehhhhhhhcccc-------------cc------------cCCCCCEEEEecC-CCccccc
Q 029421 70 SINASSPESYRWPTVGRYKVDVASFEAIALPE-------------LQ------------VGADTDLFVIDEV-GKMELFS 123 (193)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------------~~------------l~~~p~llllDEp-~~LD~~~ 123 (193)
++.+.... ............++++.+++.. ++ ++.+|++|||||| ++||+.+
T Consensus 385 ~l~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~ 462 (520)
T TIGR03269 385 NLTEAIGL--ELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPIT 462 (520)
T ss_pred HHHHHHHc--CCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 54322110 1111111122345666666642 11 7899999999999 6999999
Q ss_pred cchHHHHHHHHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 124 SSFFPAVLRILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 124 ~~~~~~ll~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
+..+.++++.++ + |.|||++ |||++++.++||++
T Consensus 463 ~~~l~~~l~~l~~~~g~tvi~v------sHd~~~~~~~~d~i 498 (520)
T TIGR03269 463 KVDVTHSILKAREEMEQTFIIV------SHDMDFVLDVCDRA 498 (520)
T ss_pred HHHHHHHHHHHHHHcCcEEEEE------eCCHHHHHHhCCEE
Confidence 999999998875 4 8999999 99999999999984
No 242
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=9.7e-29 Score=190.26 Aligned_cols=145 Identities=13% Similarity=0.138 Sum_probs=106.6
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhc--ccCCCCeEEeceEchhhccCCceeeEEEeecC--CcccccccccCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESL--KASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD--DRRAPLASINASSP 76 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~--~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~ 76 (193)
|++++|++++|+||||||||||+++|+|+. +|++|+|.++|+++. ...++.++|++|++. ...+..+++.+...
T Consensus 28 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~--~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~ 105 (192)
T cd03232 28 GYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD--KNFQRSTGYVEQQDVHSPNLTVREALRFSAL 105 (192)
T ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH--HHhhhceEEecccCccccCCcHHHHHHHHHH
Confidence 578999999999999999999999999986 489999999998874 233467999999752 22344444332100
Q ss_pred CCCCCCcccceeeehhhhhhhcccccccCCCCCEEEEecC-CCccccccchHHHHHHHHhC-CCcEEEEecCCCCCCChh
Q 029421 77 ESYRWPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEV-GKMELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIP 154 (193)
Q Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~ 154 (193)
.. ..-.-..+++.+. ..++.+|+++|+||| ++||+.++..+.++++.+++ |.|+|++ ||+.+
T Consensus 106 --~~-------~LSgGe~qrv~la-~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiiv------tH~~~ 169 (192)
T cd03232 106 --LR-------GLSVEQRKRLTIG-VELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCT------IHQPS 169 (192)
T ss_pred --Hh-------cCCHHHhHHHHHH-HHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEE------EcCCh
Confidence 00 0000011122221 127889999999999 69999999999999998876 8999999 99988
Q ss_pred -HHHHHhcCC
Q 029421 155 -AVARLRNHP 163 (193)
Q Consensus 155 -~~~~~~d~~ 163 (193)
.+..+||++
T Consensus 170 ~~~~~~~d~i 179 (192)
T cd03232 170 ASIFEKFDRL 179 (192)
T ss_pred HHHHhhCCEE
Confidence 477889883
No 243
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.5e-28 Score=199.96 Aligned_cols=155 Identities=15% Similarity=0.206 Sum_probs=112.9
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcc-----cCCCCeEEeceEchh----hccCCceeeEEEeecCC-ccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLK-----ASNPSLKVQGFYTGE----IRQGGQRVGFEVVTLDD-RRAPLAS 70 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~-----~~~G~i~~~g~~~~~----~~~~~~~ig~~~q~~~~-~~~~~~~ 70 (193)
|+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++.. ....++.++|++|++.. ..++.++
T Consensus 60 ~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~en 139 (285)
T PRK14254 60 MDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPKSIYDN 139 (285)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCcCCHHHH
Confidence 6789999999999999999999999999987 689999999988632 12335679999998621 1244444
Q ss_pred ccCCCCCCCCCCcccceeeehhhhhhhccc------------ccc------------cCCCCCEEEEecC-CCccccccc
Q 029421 71 INASSPESYRWPTVGRYKVDVASFEAIALP------------ELQ------------VGADTDLFVIDEV-GKMELFSSS 125 (193)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------------~~~------------l~~~p~llllDEp-~~LD~~~~~ 125 (193)
+.+.... ..... .......+.++.+++. .++ ++.+|++|||||| ++||+.++.
T Consensus 140 l~~~~~~-~~~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~ 217 (285)
T PRK14254 140 VAYGLKI-QGYDG-DIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATS 217 (285)
T ss_pred HHHHHHH-cCCcH-HHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHH
Confidence 4321110 00110 1111223444444432 111 7899999999999 699999999
Q ss_pred hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+.++++.++++.|||++ |||.+++..+||++
T Consensus 218 ~l~~~L~~~~~~~tiii~------tH~~~~i~~~~dri 249 (285)
T PRK14254 218 KIEDLIEELAEEYTVVIV------THNMQQAARISDKT 249 (285)
T ss_pred HHHHHHHHHhcCCEEEEE------eCCHHHHHhhcCEE
Confidence 999999988666799999 99999999999983
No 244
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.95 E-value=2.1e-28 Score=197.04 Aligned_cols=155 Identities=13% Similarity=0.186 Sum_probs=111.2
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcc-----cCCCCeEEeceEchh----hccCCceeeEEEeecCCc-cccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLK-----ASNPSLKVQGFYTGE----IRQGGQRVGFEVVTLDDR-RAPLAS 70 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~-----~~~G~i~~~g~~~~~----~~~~~~~ig~~~q~~~~~-~~~~~~ 70 (193)
|+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++.. ....++.++|++|++... .+..++
T Consensus 31 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~en 110 (264)
T PRK14243 31 LDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFPKSIYDN 110 (264)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCccccccHHHH
Confidence 5789999999999999999999999999986 479999999987631 122356799999986211 255555
Q ss_pred ccCCCCCCCCCCcccceeeehhhhhhhcc------------cccc------------cCCCCCEEEEecC-CCccccccc
Q 029421 71 INASSPESYRWPTVGRYKVDVASFEAIAL------------PELQ------------VGADTDLFVIDEV-GKMELFSSS 125 (193)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l------------~~~~------------l~~~p~llllDEp-~~LD~~~~~ 125 (193)
+.+..... .... .......+.++.+++ ..++ ++.+|+++||||| ++||+.++.
T Consensus 111 l~~~~~~~-~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~ 188 (264)
T PRK14243 111 IAYGARIN-GYKG-DMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTL 188 (264)
T ss_pred HHhhhhhc-Ccch-HHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHH
Confidence 44322110 0000 000111122222222 1122 7899999999999 699999999
Q ss_pred hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+.++++.+.++.|||++ ||+++++.++||++
T Consensus 189 ~l~~~L~~~~~~~tvi~v------tH~~~~~~~~~d~v 220 (264)
T PRK14243 189 RIEELMHELKEQYTIIIV------THNMQQAARVSDMT 220 (264)
T ss_pred HHHHHHHHHhcCCEEEEE------ecCHHHHHHhCCEE
Confidence 999999988767899999 99999999999984
No 245
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.5e-28 Score=198.74 Aligned_cols=157 Identities=15% Similarity=0.171 Sum_probs=112.1
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcc-----cCCCCeEEeceEchh----hccCCceeeEEEeecCC-ccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLK-----ASNPSLKVQGFYTGE----IRQGGQRVGFEVVTLDD-RRAPLAS 70 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~-----~~~G~i~~~g~~~~~----~~~~~~~ig~~~q~~~~-~~~~~~~ 70 (193)
|+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++.. ....++.++|++|++.. ..+..++
T Consensus 46 ~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~en 125 (272)
T PRK14236 46 MRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPKSIYEN 125 (272)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCccCcccHHHH
Confidence 6789999999999999999999999999987 489999999988642 12235679999997621 1255555
Q ss_pred ccCCCCCCCCCCcccceeeehhhhhhhccc------------ccc------------cCCCCCEEEEecC-CCccccccc
Q 029421 71 INASSPESYRWPTVGRYKVDVASFEAIALP------------ELQ------------VGADTDLFVIDEV-GKMELFSSS 125 (193)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------------~~~------------l~~~p~llllDEp-~~LD~~~~~ 125 (193)
+.+..................+.++.+++. .++ ++.+|+++||||| ++||+.++.
T Consensus 126 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~ 205 (272)
T PRK14236 126 VVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTL 205 (272)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHH
Confidence 433211000000000011122233333331 121 7899999999999 699999999
Q ss_pred hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+.++++.++++.|||++ ||+.+++.++||++
T Consensus 206 ~l~~~L~~~~~~~tiiiv------tH~~~~~~~~~d~i 237 (272)
T PRK14236 206 KIEELITELKSKYTIVIV------THNMQQAARVSDYT 237 (272)
T ss_pred HHHHHHHHHHhCCeEEEE------eCCHHHHHhhCCEE
Confidence 999999988668899999 99999999999984
No 246
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.95 E-value=5.2e-29 Score=195.87 Aligned_cols=152 Identities=16% Similarity=0.157 Sum_probs=106.3
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc-cCCceeeEEEeecCCcccccccccCCCCCC-
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR-QGGQRVGFEVVTLDDRRAPLASINASSPES- 78 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~-~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~- 78 (193)
|+|++|++++++|||||||||++|++.|++.|++|.|.++|+++...+ ..-+++++++-+ ...+.+ .++....
T Consensus 45 f~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gq----k~ql~W-dlp~~ds~ 119 (325)
T COG4586 45 FEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQ----KLQLWW-DLPALDSL 119 (325)
T ss_pred eecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhh----hheeee-echhhhhH
Confidence 689999999999999999999999999999999999999999875422 233456665431 111111 1111000
Q ss_pred ------CCCCcccceeeehhhhhhhccc--------cc------------ccCCCCCEEEEecCC-CccccccchHHHHH
Q 029421 79 ------YRWPTVGRYKVDVASFEAIALP--------EL------------QVGADTDLFVIDEVG-KMELFSSSFFPAVL 131 (193)
Q Consensus 79 ------~~~~~~~~~~~~~~~l~~~~l~--------~~------------~l~~~p~llllDEp~-~LD~~~~~~~~~ll 131 (193)
+..+...-.++....-+-+++. .+ +|+.+|++|+||||+ |||..++..+.+.+
T Consensus 120 ~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Fl 199 (325)
T COG4586 120 EVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFL 199 (325)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHH
Confidence 0011100001111111222222 11 188999999999997 99999999999999
Q ss_pred HHHhC--CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 132 RILES--NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 132 ~~l~~--g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
++..+ +.||+++ ||+++.+.++|+++
T Consensus 200 ke~n~~~~aTVllT------TH~~~di~~lc~rv 227 (325)
T COG4586 200 KEYNEERQATVLLT------THIFDDIATLCDRV 227 (325)
T ss_pred HHHHHhhCceEEEE------ecchhhHHHhhhhe
Confidence 98864 9999999 99999999999994
No 247
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.95 E-value=6.8e-29 Score=212.78 Aligned_cols=176 Identities=18% Similarity=0.259 Sum_probs=127.8
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccC----CCCeEEeceEchhh------ccCCceeeEEEeecCCccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKAS----NPSLKVQGFYTGEI------RQGGQRVGFEVVTLDDRRAPLAS 70 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~----~G~i~~~g~~~~~~------~~~~~~ig~~~q~~~~~~~~~~~ 70 (193)
|+|.+||++||+|.|||||||+.+.|.|++++. +|+|.++|.++... ...+++|+|+||++...+++...
T Consensus 30 f~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~t 109 (539)
T COG1123 30 FEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMT 109 (539)
T ss_pred EEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchhhcCchhh
Confidence 689999999999999999999999999999987 79999999875221 23457899999998433333211
Q ss_pred ccCCCCC----CCCCCcccceeeehhhhhhhccccc----------------------ccCCCCCEEEEecC-CCccccc
Q 029421 71 INASSPE----SYRWPTVGRYKVDVASFEAIALPEL----------------------QVGADTDLFVIDEV-GKMELFS 123 (193)
Q Consensus 71 ~~~~~~~----~~~~~~~~~~~~~~~~l~~~~l~~~----------------------~l~~~p~llllDEp-~~LD~~~ 123 (193)
+.....+ .......+......+.|+.+++++- +++++|++||+||| ++||+..
T Consensus 110 Ig~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~ 189 (539)
T COG1123 110 IGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTT 189 (539)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHH
Confidence 1111100 0001122233455677777777431 18899999999999 6999999
Q ss_pred cchHHHHHHHHhC--CCcEEEEecCCCCCCChhHHHHHhcCCCcEE--EEeCCCChhHHHHHH
Q 029421 124 SSFFPAVLRILES--NIPVLASIPAPKSGRDIPAVARLRNHPGATI--FTLSPGNRDSLKDNI 182 (193)
Q Consensus 124 ~~~~~~ll~~l~~--g~tvl~~~~~~~~tHd~~~~~~~~d~~~~~~--~~~~~~~~~~l~~~~ 182 (193)
+.++.++++.+.+ |.++|++ |||+..+.++||++.+.. ..+..+..+++..+-
T Consensus 190 q~qIL~llk~l~~e~g~a~l~I------THDl~Vva~~aDrv~Vm~~G~iVE~G~~~~i~~~p 246 (539)
T COG1123 190 QAQILDLLKDLQRELGMAVLFI------THDLGVVAELADRVVVMYKGEIVETGPTEEILSNP 246 (539)
T ss_pred HHHHHHHHHHHHHHcCcEEEEE------cCCHHHHHHhcCeEEEEECCEEEEecCHHHHHhcc
Confidence 9999999999864 9999999 999999999999953322 134445555555443
No 248
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.95 E-value=9.9e-29 Score=216.38 Aligned_cols=157 Identities=14% Similarity=0.205 Sum_probs=113.6
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhccc-----CCCCeEEeceEchhh-----c-cCCceeeEEEeecC----Ccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKA-----SNPSLKVQGFYTGEI-----R-QGGQRVGFEVVTLD----DRR 65 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~-----~~G~i~~~g~~~~~~-----~-~~~~~ig~~~q~~~----~~~ 65 (193)
|+|.+||+++|+||||||||||+|+|+|+++| ++|+|.++|.++... . ..++++||+||++. +..
T Consensus 30 l~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~ 109 (529)
T PRK15134 30 LQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLH 109 (529)
T ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCchhhcCchh
Confidence 67899999999999999999999999999986 799999999886321 1 12357999999852 112
Q ss_pred cccccccCCCCCCCCCCcccceeeehhhhhhhcccc-----------cc------------cCCCCCEEEEecC-CCccc
Q 029421 66 APLASINASSPESYRWPTVGRYKVDVASFEAIALPE-----------LQ------------VGADTDLFVIDEV-GKMEL 121 (193)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~------------l~~~p~llllDEp-~~LD~ 121 (193)
+..++.....................+.++.+++.+ ++ ++.+|++|||||| ++||+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~ 189 (529)
T PRK15134 110 TLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDV 189 (529)
T ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCH
Confidence 222222110000001111111233445666666642 11 8899999999999 69999
Q ss_pred cccchHHHHHHHHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 122 FSSSFFPAVLRILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 122 ~~~~~~~~ll~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.++..+.++++.++ + |.|||++ |||++.+..+||++
T Consensus 190 ~~~~~l~~~l~~l~~~~g~tvi~v------tHd~~~~~~~~dri 227 (529)
T PRK15134 190 SVQAQILQLLRELQQELNMGLLFI------THNLSIVRKLADRV 227 (529)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEE------cCcHHHHHHhcCEE
Confidence 99999999998875 4 8999999 99999999999984
No 249
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.95 E-value=1.1e-28 Score=214.37 Aligned_cols=156 Identities=15% Similarity=0.148 Sum_probs=111.6
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCCcc-ccccc-ccCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDDRR-APLAS-INASSP 76 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~~~-~~~~~-~~~~~~ 76 (193)
|+|++|++++|+||||||||||+|+|+|+++|++|+|.++|.+.... ...++.++|++|++.... +...+ ......
T Consensus 24 l~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~ 103 (490)
T PRK10938 24 LTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTA 103 (490)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhceeccCcchhhcccchhhccccHH
Confidence 67899999999999999999999999999999999999988765221 122346899999752111 11000 000000
Q ss_pred CCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh
Q 029421 77 ESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE 135 (193)
Q Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~ 135 (193)
...... ........+.++.+++.+.. ++.+|+++||||| ++||+.++..+.++++.++
T Consensus 104 ~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~ 182 (490)
T PRK10938 104 EIIQDE-VKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLH 182 (490)
T ss_pred Hhcccc-hhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 000000 01112234556666664321 7899999999999 6999999999999999887
Q ss_pred C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 136 S-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 136 ~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
+ |.|||++ |||++.+.++||++
T Consensus 183 ~~g~tvii~------tH~~~~~~~~~d~v 205 (490)
T PRK10938 183 QSGITLVLV------LNRFDEIPDFVQFA 205 (490)
T ss_pred hcCCeEEEE------eCCHHHHHhhCCEE
Confidence 6 8999999 99999999999984
No 250
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=3.8e-28 Score=184.98 Aligned_cols=157 Identities=14% Similarity=0.144 Sum_probs=113.4
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh--hccCCceeeEEEeecC--CcccccccccCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE--IRQGGQRVGFEVVTLD--DRRAPLASINASSP 76 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~--~~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~ 76 (193)
|++.+||+.+|+||||||||||||.|+|.+.|++|++.++|.+... .....+.-+.+||+.. ..+++.+...+...
T Consensus 22 l~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~ 101 (259)
T COG4559 22 LDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRI 101 (259)
T ss_pred eeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEHHHHHHhccc
Confidence 5688999999999999999999999999999999999999998643 2233455578888652 11233333333221
Q ss_pred CCC-CCCcccceeeehhhhhhhcccccc--------------------------cCCCCCEEEEecC-CCccccccchHH
Q 029421 77 ESY-RWPTVGRYKVDVASFEAIALPELQ--------------------------VGADTDLFVIDEV-GKMELFSSSFFP 128 (193)
Q Consensus 77 ~~~-~~~~~~~~~~~~~~l~~~~l~~~~--------------------------l~~~p~llllDEp-~~LD~~~~~~~~ 128 (193)
... .....+..+.....+...++..+. -..+++.|+|||| ++||+..+....
T Consensus 102 p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl 181 (259)
T COG4559 102 PHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTL 181 (259)
T ss_pred ccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHH
Confidence 111 011112223344555555544332 3356689999999 699999999999
Q ss_pred HHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 129 AVLRILES-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 129 ~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+.++++. |..|+.+ -||++.+..|||++
T Consensus 182 ~laR~la~~g~~V~~V------LHDLNLAA~YaDri 211 (259)
T COG4559 182 RLARQLAREGGAVLAV------LHDLNLAAQYADRI 211 (259)
T ss_pred HHHHHHHhcCCcEEEE------EccchHHHHhhhee
Confidence 99999987 9999999 99999999999994
No 251
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=2e-28 Score=196.87 Aligned_cols=157 Identities=13% Similarity=0.146 Sum_probs=111.8
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccC-----CCCeEEeceEchhh----ccCCceeeEEEeecCC-ccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKAS-----NPSLKVQGFYTGEI----RQGGQRVGFEVVTLDD-RRAPLAS 70 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~-----~G~i~~~g~~~~~~----~~~~~~ig~~~q~~~~-~~~~~~~ 70 (193)
|++++|++++|+||||||||||+++|+|+++|+ +|+|.++|+++... ...++.++|++|++.. ..+..++
T Consensus 28 ~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l~~~tv~en 107 (261)
T PRK14258 28 MEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDN 107 (261)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCccCcccHHHH
Confidence 678999999999999999999999999999985 79999999875311 2235679999997521 1344454
Q ss_pred ccCCCCCCCCCCcccceeeehhhhhhhccc------------ccc------------cCCCCCEEEEecC-CCccccccc
Q 029421 71 INASSPESYRWPTVGRYKVDVASFEAIALP------------ELQ------------VGADTDLFVIDEV-GKMELFSSS 125 (193)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------------~~~------------l~~~p~llllDEp-~~LD~~~~~ 125 (193)
+.+..................+.++.+++. .++ ++.+|+++||||| ++||+.++.
T Consensus 108 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~ 187 (261)
T PRK14258 108 VAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASM 187 (261)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHH
Confidence 432110000001101111223344444431 121 8899999999999 699999999
Q ss_pred hHHHHHHHHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 126 FFPAVLRILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 126 ~~~~ll~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+.++++.++ + |.|||++ |||+.++.++||++
T Consensus 188 ~l~~~l~~l~~~~~~tiiiv------sH~~~~i~~~~d~i 221 (261)
T PRK14258 188 KVESLIQSLRLRSELTMVIV------SHNLHQVSRLSDFT 221 (261)
T ss_pred HHHHHHHHHHHhCCCEEEEE------ECCHHHHHHhcCEE
Confidence 9999998874 3 8999999 99999999999983
No 252
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=5.3e-28 Score=187.57 Aligned_cols=154 Identities=10% Similarity=0.094 Sum_probs=107.5
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcc---cCCCCeEEeceEchhh-ccCCceeeEEEeec--CCcccccccccCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLK---ASNPSLKVQGFYTGEI-RQGGQRVGFEVVTL--DDRRAPLASINAS 74 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~---~~~G~i~~~g~~~~~~-~~~~~~ig~~~q~~--~~~~~~~~~~~~~ 74 (193)
|+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++... ...++.++|++|+. .+..++.+++.+.
T Consensus 28 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~ 107 (202)
T cd03233 28 GVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFA 107 (202)
T ss_pred EEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCCcHHHHHhhh
Confidence 5789999999999999999999999999999 8999999999886432 23456799999975 2334555554432
Q ss_pred CCCCCCCCcccceeeehhhhhhhcccccccCCCCCEEEEecC-CCccccccchHHHHHHHHhC--CCcEEEEecCCCCCC
Q 029421 75 SPESYRWPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEV-GKMELFSSSFFPAVLRILES--NIPVLASIPAPKSGR 151 (193)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~--g~tvl~~~~~~~~tH 151 (193)
...... .... ..-.-..+++.+. ..++.+|+++||||| ++||+.++..+.++++.+.+ +.|+|+++ +|
T Consensus 108 ~~~~~~-~~~~--~LS~Ge~qrl~la-ral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~-----~h 178 (202)
T cd03233 108 LRCKGN-EFVR--GISGGERKRVSIA-EALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSL-----YQ 178 (202)
T ss_pred hhhccc-cchh--hCCHHHHHHHHHH-HHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEE-----cC
Confidence 110000 0000 0000011122221 237889999999999 69999999999999998754 56666551 56
Q ss_pred ChhHHHHHhcCC
Q 029421 152 DIPAVARLRNHP 163 (193)
Q Consensus 152 d~~~~~~~~d~~ 163 (193)
+.+.+.++||++
T Consensus 179 ~~~~~~~~~d~i 190 (202)
T cd03233 179 ASDEIYDLFDKV 190 (202)
T ss_pred CHHHHHHhCCeE
Confidence 667888899983
No 253
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=2.3e-28 Score=195.46 Aligned_cols=156 Identities=13% Similarity=0.164 Sum_probs=109.9
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcc--c---CCCCeEEeceEchh----hccCCceeeEEEeecCC-ccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLK--A---SNPSLKVQGFYTGE----IRQGGQRVGFEVVTLDD-RRAPLAS 70 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~--~---~~G~i~~~g~~~~~----~~~~~~~ig~~~q~~~~-~~~~~~~ 70 (193)
|+|.+|++++|+||||||||||+++|+|+.+ | ++|+|.++|.++.. ....++.++|++|++.. ..+..++
T Consensus 26 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~n 105 (252)
T PRK14255 26 LDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFPFSIYEN 105 (252)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCccCCCcHHHH
Confidence 5789999999999999999999999999875 4 58999999987632 11234679999998621 1344555
Q ss_pred ccCCCCCCCCCCcccc-eeeehhhhhhhcc------------cccc------------cCCCCCEEEEecC-CCcccccc
Q 029421 71 INASSPESYRWPTVGR-YKVDVASFEAIAL------------PELQ------------VGADTDLFVIDEV-GKMELFSS 124 (193)
Q Consensus 71 ~~~~~~~~~~~~~~~~-~~~~~~~l~~~~l------------~~~~------------l~~~p~llllDEp-~~LD~~~~ 124 (193)
+.+.... ........ .....+.++.+++ ..++ ++.+|+++||||| ++||+.++
T Consensus 106 l~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~ 184 (252)
T PRK14255 106 VIYGLRL-AGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISS 184 (252)
T ss_pred HHHHHHH-cCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHH
Confidence 4322110 00000000 0111122222222 1121 8899999999999 69999999
Q ss_pred chHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 125 SFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 125 ~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
..+.++++.+.++.|||++ ||+.+.+.++||++
T Consensus 185 ~~l~~~l~~~~~~~tii~v------sH~~~~~~~~~d~i 217 (252)
T PRK14255 185 TQIENMLLELRDQYTIILV------THSMHQASRISDKT 217 (252)
T ss_pred HHHHHHHHHHHhCCEEEEE------ECCHHHHHHhCCEE
Confidence 9999999888667899999 99999999999984
No 254
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.95 E-value=9.9e-29 Score=204.36 Aligned_cols=146 Identities=12% Similarity=0.151 Sum_probs=110.4
Q ss_pred EEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeec--CCcccccccccCCCCCCCCCCccccee
Q 029421 11 VTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTL--DDRRAPLASINASSPESYRWPTVGRYK 88 (193)
Q Consensus 11 l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (193)
|+||||||||||+|+|+|+++|++|+|.++|+++......+++++|+||++ ++..++.+|+.+.... ..........
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~-~~~~~~~~~~ 79 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKM-RKVPRAEIKP 79 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhh-cCCCHHHHHH
Confidence 689999999999999999999999999999998744333356799999986 3345666665543211 0111111112
Q ss_pred eehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh-C-CCcEEEEec
Q 029421 89 VDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE-S-NIPVLASIP 145 (193)
Q Consensus 89 ~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~-~-g~tvl~~~~ 145 (193)
...++++.+++..+. ++.+|+++||||| ++||+.++..+.++++.+. + |.|+|++
T Consensus 80 ~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiiv-- 157 (325)
T TIGR01187 80 RVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFV-- 157 (325)
T ss_pred HHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEE--
Confidence 334566666664321 8899999999999 7999999999999998875 4 8999999
Q ss_pred CCCCCCChhHHHHHhcCC
Q 029421 146 APKSGRDIPAVARLRNHP 163 (193)
Q Consensus 146 ~~~~tHd~~~~~~~~d~~ 163 (193)
|||++++.++||++
T Consensus 158 ----THd~~e~~~~~d~i 171 (325)
T TIGR01187 158 ----THDQEEAMTMSDRI 171 (325)
T ss_pred ----eCCHHHHHHhCCEE
Confidence 99999999999984
No 255
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.95 E-value=2.1e-28 Score=214.35 Aligned_cols=156 Identities=18% Similarity=0.218 Sum_probs=115.7
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc-----cCCceeeEEEeec----CCcccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR-----QGGQRVGFEVVTL----DDRRAPLASI 71 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~-----~~~~~ig~~~q~~----~~~~~~~~~~ 71 (193)
|+|++|++++|+||||||||||+|+|+|+++ ++|+|+++|.++.... ..+++++|+||++ .+..++.+++
T Consensus 307 l~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l 385 (529)
T PRK15134 307 FTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQII 385 (529)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHH
Confidence 6789999999999999999999999999985 8999999998764221 1245799999985 2234555554
Q ss_pred cCCCCCCC-CCCcccceeeehhhhhhhccc-cc--------c------------cCCCCCEEEEecC-CCccccccchHH
Q 029421 72 NASSPESY-RWPTVGRYKVDVASFEAIALP-EL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFP 128 (193)
Q Consensus 72 ~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~-~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~ 128 (193)
.+...... ............++++.+++. .. + ++.+|++|||||| ++||+.++..+.
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~ 465 (529)
T PRK15134 386 EEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQIL 465 (529)
T ss_pred HHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHH
Confidence 33211000 011111112344566666764 21 1 7899999999999 699999999999
Q ss_pred HHHHHHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 129 AVLRILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 129 ~ll~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
++++.++ + |.|||++ |||++++..+||++
T Consensus 466 ~~l~~~~~~~~~tvi~v------sHd~~~~~~~~d~i 496 (529)
T PRK15134 466 ALLKSLQQKHQLAYLFI------SHDLHVVRALCHQV 496 (529)
T ss_pred HHHHHHHHhhCCEEEEE------eCCHHHHHHhcCeE
Confidence 9999875 4 8999999 99999999999994
No 256
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.95 E-value=7.6e-28 Score=186.38 Aligned_cols=145 Identities=12% Similarity=0.117 Sum_probs=105.0
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhh--cccCCCCeEEeceEchhhc---cCCceeeEEEeecCC--cccccccccC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLES--LKASNPSLKVQGFYTGEIR---QGGQRVGFEVVTLDD--RRAPLASINA 73 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl--~~~~~G~i~~~g~~~~~~~---~~~~~ig~~~q~~~~--~~~~~~~~~~ 73 (193)
|++.+|++++|+||||||||||+++|+|+ ++|++|+|.++|.++.... ..+..++|++|++.. ..+..++...
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~~ 100 (200)
T cd03217 21 LTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLRY 100 (200)
T ss_pred eEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHHhh
Confidence 67899999999999999999999999999 5799999999999874321 123459999997521 1111111100
Q ss_pred CCCCCCCCCcccceeeehhhhhhhcccccccCCCCCEEEEecC-CCccccccchHHHHHHHHhC-CCcEEEEecCCCCCC
Q 029421 74 SSPESYRWPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEV-GKMELFSSSFFPAVLRILES-NIPVLASIPAPKSGR 151 (193)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tH 151 (193)
.. ...-.-..+++.+. ..++.+|+++||||| ++||+.++..+.+++..+++ |.|||++ ||
T Consensus 101 -------~~----~~LS~G~~qrv~la-ral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~------sh 162 (200)
T cd03217 101 -------VN----EGFSGGEKKRNEIL-QLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLII------TH 162 (200)
T ss_pred -------cc----ccCCHHHHHHHHHH-HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEE------ec
Confidence 00 00000111222221 237889999999999 69999999999999988866 8999999 99
Q ss_pred ChhHHHH-HhcCC
Q 029421 152 DIPAVAR-LRNHP 163 (193)
Q Consensus 152 d~~~~~~-~~d~~ 163 (193)
+++.+.+ +||++
T Consensus 163 ~~~~~~~~~~d~i 175 (200)
T cd03217 163 YQRLLDYIKPDRV 175 (200)
T ss_pred CHHHHHHhhCCEE
Confidence 9998887 79984
No 257
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.95 E-value=4.6e-28 Score=188.41 Aligned_cols=148 Identities=14% Similarity=0.200 Sum_probs=107.1
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecC-CcccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLD-DRRAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~-~~~~~~~~~~~~~~~ 77 (193)
|+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ...++.++|++|++. ...+..+++.+...
T Consensus 29 l~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~~l~~~~~- 107 (207)
T cd03369 29 FKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDE- 107 (207)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccCccHHHHhcccCC-
Confidence 57899999999999999999999999999999999999999886422 123567999999862 12244444322110
Q ss_pred CCCCCcccceeeehhhhh-hhccccc------------ccCCCCCEEEEecC-CCccccccchHHHHHHHHhCCCcEEEE
Q 029421 78 SYRWPTVGRYKVDVASFE-AIALPEL------------QVGADTDLFVIDEV-GKMELFSSSFFPAVLRILESNIPVLAS 143 (193)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~-~~~l~~~------------~l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~g~tvl~~ 143 (193)
... ....+.++ ......+ .++.+|+++||||| ++||+.++..+.++++.+.+|.|+|++
T Consensus 108 ---~~~----~~~~~~l~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~ 180 (207)
T cd03369 108 ---YSD----EEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTI 180 (207)
T ss_pred ---CCH----HHHHHHhhccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 000 00111111 0001111 17889999999999 699999999999999887668999999
Q ss_pred ecCCCCCCChhHHHHHhcCC
Q 029421 144 IPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 144 ~~~~~~tHd~~~~~~~~d~~ 163 (193)
||+.+.+.. ||++
T Consensus 181 ------th~~~~~~~-~d~v 193 (207)
T cd03369 181 ------AHRLRTIID-YDKI 193 (207)
T ss_pred ------eCCHHHHhh-CCEE
Confidence 999988865 8873
No 258
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.95 E-value=2.1e-28 Score=235.59 Aligned_cols=156 Identities=15% Similarity=0.060 Sum_probs=121.6
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh-hccCCceeeEEEeec--CCcccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE-IRQGGQRVGFEVVTL--DDRRAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~-~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~~ 77 (193)
|++.+|++++|+||||||||||+++|+|+++|++|+|.++|.++.. ....++.+||+||+. .+..++.+++.+....
T Consensus 951 l~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~l 1030 (2272)
T TIGR01257 951 ITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQL 1030 (2272)
T ss_pred EEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHh
Confidence 5789999999999999999999999999999999999999998742 233456799999986 3445666665442111
Q ss_pred CCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHHhC
Q 029421 78 SYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILES 136 (193)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~ 136 (193)
.............+.++.+++.+.. ++.+|+++||||| +|||+.++..+.++++.+++
T Consensus 1031 -kg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~ 1109 (2272)
T TIGR01257 1031 -KGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRS 1109 (2272)
T ss_pred -cCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhC
Confidence 1111111122345567777765431 8899999999999 69999999999999999867
Q ss_pred CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 137 NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 137 g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
|.|||++ ||+++++..+||++
T Consensus 1110 g~TIIlt------THdmdea~~laDrI 1130 (2272)
T TIGR01257 1110 GRTIIMS------THHMDEADLLGDRI 1130 (2272)
T ss_pred CCEEEEE------ECCHHHHHHhCCEE
Confidence 9999999 99999999999994
No 259
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.95 E-value=3.2e-28 Score=211.45 Aligned_cols=157 Identities=7% Similarity=0.046 Sum_probs=111.9
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc---cCCceeeEEEeecC-----Cccccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR---QGGQRVGFEVVTLD-----DRRAPLASIN 72 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~---~~~~~ig~~~q~~~-----~~~~~~~~~~ 72 (193)
|+|++|++++|+||||||||||+|+|+|+++|++|+|.++|.++...+ ..++.++|++|+.. +..+..++..
T Consensus 269 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~ 348 (491)
T PRK10982 269 FDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSL 348 (491)
T ss_pred EEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHhee
Confidence 578999999999999999999999999999999999999998764221 12455899998641 2222222211
Q ss_pred CCCCC-C---CCC-Ccccceeeehhhhhhhccc-cc--------c------------cCCCCCEEEEecC-CCccccccc
Q 029421 73 ASSPE-S---YRW-PTVGRYKVDVASFEAIALP-EL--------Q------------VGADTDLFVIDEV-GKMELFSSS 125 (193)
Q Consensus 73 ~~~~~-~---~~~-~~~~~~~~~~~~l~~~~l~-~~--------~------------l~~~p~llllDEp-~~LD~~~~~ 125 (193)
..... . ... ..........+.++.+++. .. + ++.+|++|||||| +|||+.++.
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~ 428 (491)
T PRK10982 349 ISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKF 428 (491)
T ss_pred hhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHH
Confidence 11000 0 000 0000111223445555552 11 1 7899999999999 699999999
Q ss_pred hHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 126 FFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 126 ~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+.++++.+.+ |.|||++ |||++++.++||++
T Consensus 429 ~~~~~l~~l~~~~~tvi~v------sHd~~~~~~~~d~v 461 (491)
T PRK10982 429 EIYQLIAELAKKDKGIIII------SSEMPELLGITDRI 461 (491)
T ss_pred HHHHHHHHHHHCCCEEEEE------CCChHHHHhhCCEE
Confidence 99999998876 9999999 99999999999993
No 260
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.95 E-value=8.2e-28 Score=192.91 Aligned_cols=176 Identities=8% Similarity=0.111 Sum_probs=116.3
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCC-cccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDD-RRAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~ 77 (193)
|+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++... ...++.++|++|++.. ..+..++......
T Consensus 42 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~- 120 (257)
T cd03288 42 AYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECK- 120 (257)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEEEECCCCcccccHHHHhcCcCCC-
Confidence 57899999999999999999999999999999999999999886432 2335679999997621 1233333221100
Q ss_pred CCCCCcccc---eeeehhhhhhh--ccc--------ccc------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421 78 SYRWPTVGR---YKVDVASFEAI--ALP--------ELQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVL 131 (193)
Q Consensus 78 ~~~~~~~~~---~~~~~~~l~~~--~l~--------~~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll 131 (193)
. ....... .....+.++.+ ++. .++ ++.+|+++||||| ++||+.++..+.+++
T Consensus 121 ~-~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l 199 (257)
T cd03288 121 C-TDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVV 199 (257)
T ss_pred C-CHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence 0 0000000 00011112221 111 111 8899999999999 699999998899988
Q ss_pred HHHhCCCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHHHHHHHHHH
Q 029421 132 RILESNIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLKDNIYYQLT 187 (193)
Q Consensus 132 ~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~~~~~~~~~ 187 (193)
+.+.++.|||++ ||+++.+.. ||++ ++.++. .++.+++.+.....+.
T Consensus 200 ~~~~~~~tiii~------sh~~~~~~~-~dri~~l~~G~i~~--~g~~~~~~~~~~~~~~ 250 (257)
T cd03288 200 MTAFADRTVVTI------AHRVSTILD-ADLVLVLSRGILVE--CDTPENLLAQEDGVFA 250 (257)
T ss_pred HHhcCCCEEEEE------ecChHHHHh-CCEEEEEECCEEEE--eCCHHHHHhccchHHH
Confidence 887668999999 999998875 8884 344432 2445555444333333
No 261
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.95 E-value=5e-28 Score=211.59 Aligned_cols=156 Identities=13% Similarity=0.158 Sum_probs=113.3
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhc--ccCCCCeEEec-----------------------eEch-------h--
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESL--KASNPSLKVQG-----------------------FYTG-------E-- 46 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~--~~~~G~i~~~g-----------------------~~~~-------~-- 46 (193)
|++.+|++++|+||||||||||+|+|+|++ +|++|+|.++| .++. .
T Consensus 21 ~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~ 100 (520)
T TIGR03269 21 FTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLS 100 (520)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccccccccccccccccchhhhccC
Confidence 578999999999999999999999999997 79999999972 2110 0
Q ss_pred ---hccCCceeeEEEeec---CCcccccccccCCCCCCCCCCcccceeeehhhhhhhcccccc-----------------
Q 029421 47 ---IRQGGQRVGFEVVTL---DDRRAPLASINASSPESYRWPTVGRYKVDVASFEAIALPELQ----------------- 103 (193)
Q Consensus 47 ---~~~~~~~ig~~~q~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------------- 103 (193)
....++.++|+||++ .+..++.+++.+.... .............++++.+++.+..
T Consensus 101 ~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~i 179 (520)
T TIGR03269 101 DKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEE-IGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGGEKQRVVL 179 (520)
T ss_pred HHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCChhhhhcCcccCCHHHHHHHHH
Confidence 012245699999962 2334555554332110 1111111122344566777764321
Q ss_pred ---cCCCCCEEEEecC-CCccccccchHHHHHHHH-hC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 104 ---VGADTDLFVIDEV-GKMELFSSSFFPAVLRIL-ES-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 104 ---l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l-~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
++.+|++|||||| ++||+.++..+.++++.+ ++ |.|||++ |||++.+.++||++
T Consensus 180 A~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviiv------tHd~~~~~~~~d~i 239 (520)
T TIGR03269 180 ARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLT------SHWPEVIEDLSDKA 239 (520)
T ss_pred HHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEE------eCCHHHHHHhcCEE
Confidence 8899999999999 699999999999999887 44 8999999 99999999999984
No 262
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.95 E-value=9.8e-28 Score=186.15 Aligned_cols=143 Identities=15% Similarity=0.201 Sum_probs=101.0
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecC-CcccccccccCCCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD-DRRAPLASINASSPESY 79 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~-~~~~~~~~~~~~~~~~~ 79 (193)
|+|++|++++|+||||||||||+++|+|+++|++|+|.++| +++|++|++. ...+..+++.+....
T Consensus 26 ~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-----------~i~~~~q~~~l~~~t~~enl~~~~~~-- 92 (204)
T cd03250 26 LEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-----------SIAYVSQEPWIQNGTIRENILFGKPF-- 92 (204)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-----------EEEEEecCchhccCcHHHHhccCCCc--
Confidence 57899999999999999999999999999999999999988 5899999872 233555665442211
Q ss_pred CCCcccce--e-eehhhhhhh--c--------ccccc------------cCCCCCEEEEecC-CCccccccchHHH-HHH
Q 029421 80 RWPTVGRY--K-VDVASFEAI--A--------LPELQ------------VGADTDLFVIDEV-GKMELFSSSFFPA-VLR 132 (193)
Q Consensus 80 ~~~~~~~~--~-~~~~~l~~~--~--------l~~~~------------l~~~p~llllDEp-~~LD~~~~~~~~~-ll~ 132 (193)
........ . ...+.+... + ...++ ++.+|+++|+||| ++||+.++..+.+ +++
T Consensus 93 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~ 172 (204)
T cd03250 93 DEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCIL 172 (204)
T ss_pred CHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 00000000 0 001111111 0 01121 8899999999999 6999999877766 566
Q ss_pred HHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 133 ILES-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 133 ~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+.+ |.|||++ ||+...+.. ||++
T Consensus 173 ~~~~~~~tvi~~------sh~~~~~~~-~d~i 197 (204)
T cd03250 173 GLLLNNKTRILV------THQLQLLPH-ADQI 197 (204)
T ss_pred HhccCCCEEEEE------eCCHHHHhh-CCEE
Confidence 6544 8999999 999988876 8873
No 263
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=3.9e-28 Score=196.50 Aligned_cols=155 Identities=14% Similarity=0.187 Sum_probs=110.5
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhccc-----CCCCeEEeceEchh----hccCCceeeEEEeecCC-ccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKA-----SNPSLKVQGFYTGE----IRQGGQRVGFEVVTLDD-RRAPLAS 70 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~-----~~G~i~~~g~~~~~----~~~~~~~ig~~~q~~~~-~~~~~~~ 70 (193)
|+|++|++++|+||||||||||+++|+|+++| ++|+|.++|.++.. ....++.++|+||++.. ..++.++
T Consensus 41 ~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~tv~~n 120 (274)
T PRK14265 41 LKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPKSIYEN 120 (274)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCccccccHHHH
Confidence 67899999999999999999999999999863 68999999987632 12235679999998621 1244555
Q ss_pred ccCCCCCCCCCCcccceeeehhhhhhhcc------------cccc------------cCCCCCEEEEecC-CCccccccc
Q 029421 71 INASSPESYRWPTVGRYKVDVASFEAIAL------------PELQ------------VGADTDLFVIDEV-GKMELFSSS 125 (193)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l------------~~~~------------l~~~p~llllDEp-~~LD~~~~~ 125 (193)
+.+..... .... .......+.++.+++ ..++ ++.+|+++||||| ++||+.++.
T Consensus 121 l~~~~~~~-~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~ 198 (274)
T PRK14265 121 IAFAPRAN-GYKG-NLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTR 198 (274)
T ss_pred HHhHHHhc-CchH-HHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHH
Confidence 43321100 0000 000111122222222 1111 7899999999999 699999999
Q ss_pred hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+.++++.++++.|||++ |||.+++.++||++
T Consensus 199 ~l~~~L~~~~~~~tiii~------sH~~~~~~~~~d~i 230 (274)
T PRK14265 199 QVEELCLELKEQYTIIMV------THNMQQASRVADWT 230 (274)
T ss_pred HHHHHHHHHhcCCEEEEE------eCCHHHHHHhCCEE
Confidence 999999988768899999 99999999999984
No 264
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.95 E-value=1e-27 Score=180.64 Aligned_cols=134 Identities=15% Similarity=0.195 Sum_probs=99.2
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecC-CcccccccccCCCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD-DRRAPLASINASSPESY 79 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~-~~~~~~~~~~~~~~~~~ 79 (193)
|++.+|++++|+||||||||||+++|+|+++|++|+|.++|. +.++|++|++. ...+..+++.+.
T Consensus 22 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~---------~~i~~~~q~~~~~~~tv~~nl~~~----- 87 (166)
T cd03223 22 FEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG---------EDLLFLPQRPYLPLGTLREQLIYP----- 87 (166)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC---------ceEEEECCCCccccccHHHHhhcc-----
Confidence 578999999999999999999999999999999999998762 57899999762 223445554321
Q ss_pred CCCcccceeeehhhhhhhcccccccCCCCCEEEEecC-CCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChhHHHH
Q 029421 80 RWPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEV-GKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVAR 158 (193)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~ 158 (193)
.. . ..-.-..+++.+. ..++.+|+++|+||| ++||+.++..+.++++.+ +.|+|++ |||.+.. .
T Consensus 88 -~~--~--~LS~G~~~rv~la-ral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiiv------sh~~~~~-~ 152 (166)
T cd03223 88 -WD--D--VLSGGEQQRLAFA-RLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISV------GHRPSLW-K 152 (166)
T ss_pred -CC--C--CCCHHHHHHHHHH-HHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEE------eCChhHH-h
Confidence 00 0 0000111222221 236789999999999 699999998888888766 6899999 9998754 5
Q ss_pred HhcCC
Q 029421 159 LRNHP 163 (193)
Q Consensus 159 ~~d~~ 163 (193)
+||++
T Consensus 153 ~~d~i 157 (166)
T cd03223 153 FHDRV 157 (166)
T ss_pred hCCEE
Confidence 88873
No 265
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.95 E-value=4.8e-28 Score=193.55 Aligned_cols=157 Identities=10% Similarity=0.118 Sum_probs=108.8
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhh--cccCCCCeEEeceEchhhc--cCC-ceeeEEEeecC--CcccccccccC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLES--LKASNPSLKVQGFYTGEIR--QGG-QRVGFEVVTLD--DRRAPLASINA 73 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl--~~~~~G~i~~~g~~~~~~~--~~~-~~ig~~~q~~~--~~~~~~~~~~~ 73 (193)
|++++|++++|+||||||||||+++|+|+ ++|++|+|.++|.++.... ... ..++|++|++. +..+..++..+
T Consensus 28 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~ 107 (252)
T CHL00131 28 LSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRL 107 (252)
T ss_pred eEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEEEEeccccccccccHHHHHHH
Confidence 67899999999999999999999999998 5799999999998764321 112 24778888752 22223333221
Q ss_pred CCCC---CCCCCcc---cceeeehhhhhhhccc----------ccc------------cCCCCCEEEEecC-CCcccccc
Q 029421 74 SSPE---SYRWPTV---GRYKVDVASFEAIALP----------ELQ------------VGADTDLFVIDEV-GKMELFSS 124 (193)
Q Consensus 74 ~~~~---~~~~~~~---~~~~~~~~~l~~~~l~----------~~~------------l~~~p~llllDEp-~~LD~~~~ 124 (193)
.... ....... .......+.++.+++. .++ ++.+|+++||||| ++||+.++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~ 187 (252)
T CHL00131 108 AYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDAL 187 (252)
T ss_pred hhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHH
Confidence 1100 0000000 0001123344444443 122 7899999999999 69999999
Q ss_pred chHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHH-hcCC
Q 029421 125 SFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARL-RNHP 163 (193)
Q Consensus 125 ~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~-~d~~ 163 (193)
..+.++++.+.+ |.|||++ |||.+.+..+ ||++
T Consensus 188 ~~l~~~l~~~~~~g~tii~~------tH~~~~~~~~~~d~i 222 (252)
T CHL00131 188 KIIAEGINKLMTSENSIILI------THYQRLLDYIKPDYV 222 (252)
T ss_pred HHHHHHHHHHHhCCCEEEEE------ecCHHHHHhhhCCEE
Confidence 999999988866 8999999 9999988876 7873
No 266
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.95 E-value=1.5e-28 Score=183.09 Aligned_cols=157 Identities=14% Similarity=0.191 Sum_probs=121.7
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh---------------hccCCceeeEEEeecC--C
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE---------------IRQGGQRVGFEVVTLD--D 63 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~---------------~~~~~~~ig~~~q~~~--~ 63 (193)
++.+.|+++.|+|.|||||||+||||+-+..|+.|.|.++|+.+.- ....+.+.|++||+++ .
T Consensus 27 L~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWs 106 (256)
T COG4598 27 LQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWS 106 (256)
T ss_pred eecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchhH
Confidence 3567899999999999999999999999999999999999986521 1122457899999874 3
Q ss_pred cccccccccCCCCCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCcccc
Q 029421 64 RRAPLASINASSPESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELF 122 (193)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~ 122 (193)
.++.++|............+.+....+...+.++|+.+.. |+.+|+++++||| ++|||.
T Consensus 107 HmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPE 186 (256)
T COG4598 107 HMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPE 186 (256)
T ss_pred HHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHH
Confidence 4566666432221122233333334556677777776432 8999999999999 699999
Q ss_pred ccchHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 123 SSSFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 123 ~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
...++..+++.+++ |.|++++ ||.+.++...++++
T Consensus 187 lVgEVLkv~~~LAeEgrTMv~V------THEM~FAR~Vss~v 222 (256)
T COG4598 187 LVGEVLKVMQDLAEEGRTMVVV------THEMGFARDVSSHV 222 (256)
T ss_pred HHHHHHHHHHHHHHhCCeEEEE------eeehhHHHhhhhhe
Confidence 99999999999987 9999999 99999999998883
No 267
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.95 E-value=4e-28 Score=193.48 Aligned_cols=157 Identities=12% Similarity=0.167 Sum_probs=107.3
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhc--ccCCCCeEEeceEchhhc---cCCceeeEEEeecCCc--ccccccccC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESL--KASNPSLKVQGFYTGEIR---QGGQRVGFEVVTLDDR--RAPLASINA 73 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~--~~~~G~i~~~g~~~~~~~---~~~~~ig~~~q~~~~~--~~~~~~~~~ 73 (193)
|+|++|++++|+||||||||||+++|+|++ +|++|+|.++|.++.... ..+..++|++|++... .+.......
T Consensus 22 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~ 101 (248)
T PRK09580 22 LEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQT 101 (248)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCchhccchhHHHHHHH
Confidence 578999999999999999999999999995 699999999998763221 1234689999976211 111111000
Q ss_pred CCC--CCCCC----Ccccceeeehhhhhhhccc----------ccc------------cCCCCCEEEEecC-CCcccccc
Q 029421 74 SSP--ESYRW----PTVGRYKVDVASFEAIALP----------ELQ------------VGADTDLFVIDEV-GKMELFSS 124 (193)
Q Consensus 74 ~~~--~~~~~----~~~~~~~~~~~~l~~~~l~----------~~~------------l~~~p~llllDEp-~~LD~~~~ 124 (193)
... ..... ..........+.++.+++. .++ ++.+|+++||||| ++||+.++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~ 181 (248)
T PRK09580 102 ALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDAL 181 (248)
T ss_pred hhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHH
Confidence 000 00000 0000011122333433432 233 8899999999999 69999999
Q ss_pred chHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHH-hcCC
Q 029421 125 SFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARL-RNHP 163 (193)
Q Consensus 125 ~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~-~d~~ 163 (193)
..+.++++.+++ |.|||++ |||...+..+ ||++
T Consensus 182 ~~l~~~l~~l~~~~~tiii~------sH~~~~~~~~~~d~i 216 (248)
T PRK09580 182 KIVADGVNSLRDGKRSFIIV------THYQRILDYIKPDYV 216 (248)
T ss_pred HHHHHHHHHHHhCCCEEEEE------eCCHHHHHhhhCCEE
Confidence 999999988876 8999999 9999988877 7873
No 268
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=6.6e-28 Score=197.89 Aligned_cols=157 Identities=16% Similarity=0.207 Sum_probs=112.8
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcc-----cCCCCeEEeceEchh----hccCCceeeEEEeecC-Cccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLK-----ASNPSLKVQGFYTGE----IRQGGQRVGFEVVTLD-DRRAPLAS 70 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~-----~~~G~i~~~g~~~~~----~~~~~~~ig~~~q~~~-~~~~~~~~ 70 (193)
|+|.+|++++|+||||||||||+++|+|+++ |++|+|.++|.++.. ....++.++|++|++. ...++.++
T Consensus 66 ~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~en 145 (305)
T PRK14264 66 MDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFPKSIREN 145 (305)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCCccccccHHHH
Confidence 5789999999999999999999999999986 689999999987642 1223467999999862 11355555
Q ss_pred ccCCCCCCC-----------CCCc-ccceeeehhhhhhhccc------------ccc------------cCCCCCEEEEe
Q 029421 71 INASSPESY-----------RWPT-VGRYKVDVASFEAIALP------------ELQ------------VGADTDLFVID 114 (193)
Q Consensus 71 ~~~~~~~~~-----------~~~~-~~~~~~~~~~l~~~~l~------------~~~------------l~~~p~llllD 114 (193)
+.+...... .... ........++++.+++. .++ ++.+|++||||
T Consensus 146 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLD 225 (305)
T PRK14264 146 ISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMD 225 (305)
T ss_pred HHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 443211000 0000 00011122334444331 111 88999999999
Q ss_pred cC-CCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 115 EV-GKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 115 Ep-~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
|| +|||+.++..+.++++.++++.|||++ ||+++.+..+||++
T Consensus 226 EPtsgLD~~~~~~l~~~L~~~~~~~tiiiv------tH~~~~i~~~~d~i 269 (305)
T PRK14264 226 EPASALDPIATSKIEDLIEELAEEYTVVVV------THNMQQAARISDQT 269 (305)
T ss_pred CCcccCCHHHHHHHHHHHHHHhcCCEEEEE------EcCHHHHHHhcCEE
Confidence 99 699999999999999988767899999 99999999999983
No 269
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=4.8e-28 Score=195.03 Aligned_cols=156 Identities=12% Similarity=0.141 Sum_probs=109.9
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhccc-----CCCCeEEeceEchh------hccCCceeeEEEeecCC-ccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKA-----SNPSLKVQGFYTGE------IRQGGQRVGFEVVTLDD-RRAPL 68 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~-----~~G~i~~~g~~~~~------~~~~~~~ig~~~q~~~~-~~~~~ 68 (193)
|+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+... ....++.++|++|++.. ..+..
T Consensus 37 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~ 116 (265)
T PRK14252 37 MMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPKSIF 116 (265)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccCCcCCcchHH
Confidence 57899999999999999999999999999875 79999999876421 11235679999997621 12445
Q ss_pred ccccCCCCCCCCCCc-ccceeeehhhhhhhcc------------cccc------------cCCCCCEEEEecC-CCcccc
Q 029421 69 ASINASSPESYRWPT-VGRYKVDVASFEAIAL------------PELQ------------VGADTDLFVIDEV-GKMELF 122 (193)
Q Consensus 69 ~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l------------~~~~------------l~~~p~llllDEp-~~LD~~ 122 (193)
+++.+..... .... ........+.++.+++ ..++ ++.+|+++||||| ++||+.
T Consensus 117 eni~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~ 195 (265)
T PRK14252 117 ENVAYGLRIR-GVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPI 195 (265)
T ss_pred HHHHhHHHHc-CCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHH
Confidence 5543321100 0000 0000111222232222 1111 7899999999999 699999
Q ss_pred ccchHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 123 SSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 123 ~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
++..+.++++.++++.|||++ ||+++++.++||++
T Consensus 196 ~~~~l~~~l~~l~~~~tiiiv------th~~~~~~~~~d~i 230 (265)
T PRK14252 196 ATASIEELISDLKNKVTILIV------THNMQQAARVSDYT 230 (265)
T ss_pred HHHHHHHHHHHHHhCCEEEEE------ecCHHHHHHhCCEE
Confidence 999999999988668899999 99999999999984
No 270
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.95 E-value=3.1e-28 Score=191.73 Aligned_cols=148 Identities=18% Similarity=0.184 Sum_probs=103.6
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecCCcccccccccCCCCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPLASINASSPESYR 80 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~ 80 (193)
|+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+.... ....++. +..++.+++.+.... ..
T Consensus 43 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~---~~~~~~~-----~~~tv~enl~~~~~~-~~ 113 (224)
T cd03220 43 FEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLL---GLGGGFN-----PELTGRENIYLNGRL-LG 113 (224)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhh---cccccCC-----CCCcHHHHHHHHHHH-cC
Confidence 67899999999999999999999999999999999999999875311 1111221 123444443221110 00
Q ss_pred CCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHHHhC-CC
Q 029421 81 WPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILES-NI 138 (193)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~-g~ 138 (193)
...........+.++.+++... + ++.+|+++||||| ++||+.++..+.++++.+++ |.
T Consensus 114 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~ 193 (224)
T cd03220 114 LSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGK 193 (224)
T ss_pred CCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCC
Confidence 0000001112233444444321 1 7899999999999 69999999999999988765 89
Q ss_pred cEEEEecCCCCCCChhHHHHHhcCC
Q 029421 139 PVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 139 tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
|||++ ||+.+++..+||++
T Consensus 194 tiii~------sH~~~~~~~~~d~i 212 (224)
T cd03220 194 TVILV------SHDPSSIKRLCDRA 212 (224)
T ss_pred EEEEE------eCCHHHHHHhCCEE
Confidence 99999 99999999999983
No 271
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.95 E-value=1.4e-27 Score=187.05 Aligned_cols=147 Identities=14% Similarity=0.211 Sum_probs=105.0
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh------ccCCceeeEEEeecC-CcccccccccC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI------RQGGQRVGFEVVTLD-DRRAPLASINA 73 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~------~~~~~~ig~~~q~~~-~~~~~~~~~~~ 73 (193)
|+|++|++++|+||||||||||+++|+|+++|++|+|.++|+++... ...++.++|++|++. ...+..+++.+
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~t~~~nl~~ 101 (218)
T cd03290 22 IRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLNATVEENITF 101 (218)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceEEEEcCCCccccccHHHHHhh
Confidence 57899999999999999999999999999999999999999875321 122456999999862 12344555433
Q ss_pred CCCCCCCCCcccceeeehhhhhhhc-------------------ccccc------------cCCCCCEEEEecC-CCccc
Q 029421 74 SSPESYRWPTVGRYKVDVASFEAIA-------------------LPELQ------------VGADTDLFVIDEV-GKMEL 121 (193)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~l~~~~-------------------l~~~~------------l~~~p~llllDEp-~~LD~ 121 (193)
.... .. .. ..+.++.++ ...++ ++.+|+++||||| ++||+
T Consensus 102 ~~~~----~~-~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~ 173 (218)
T cd03290 102 GSPF----NK-QR---YKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDI 173 (218)
T ss_pred cCcC----CH-HH---HHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCH
Confidence 2110 00 00 001111111 11122 8899999999999 69999
Q ss_pred cccchHHH--HHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcC
Q 029421 122 FSSSFFPA--VLRILES-NIPVLASIPAPKSGRDIPAVARLRNH 162 (193)
Q Consensus 122 ~~~~~~~~--ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~ 162 (193)
.++..+.+ +++.+++ |.|+|++ ||+.+.+. .||+
T Consensus 174 ~~~~~l~~~~ll~~~~~~~~tii~~------sH~~~~~~-~~d~ 210 (218)
T cd03290 174 HLSDHLMQEGILKFLQDDKRTLVLV------THKLQYLP-HADW 210 (218)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEE------eCChHHHh-hCCE
Confidence 99887776 7777766 8999999 99998774 5776
No 272
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.1e-27 Score=198.15 Aligned_cols=156 Identities=13% Similarity=0.194 Sum_probs=113.2
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcc-----cCCCCeEEeceEchhh----ccCCceeeEEEeecCC-ccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLK-----ASNPSLKVQGFYTGEI----RQGGQRVGFEVVTLDD-RRAPLAS 70 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~-----~~~G~i~~~g~~~~~~----~~~~~~ig~~~q~~~~-~~~~~~~ 70 (193)
|+|++|++++|+||||||||||+++|+|+.+ |++|+|.++|.++... ...+..++|+||++.. ..+..+|
T Consensus 103 ~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~~ti~eN 182 (329)
T PRK14257 103 LDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDN 182 (329)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCCCcHHHH
Confidence 5799999999999999999999999999986 5799999999987421 2345679999998732 2455566
Q ss_pred ccCCCCCCCCCCcccc-eeeehhhhhhhccc------------ccc------------cCCCCCEEEEecC-CCcccccc
Q 029421 71 INASSPESYRWPTVGR-YKVDVASFEAIALP------------ELQ------------VGADTDLFVIDEV-GKMELFSS 124 (193)
Q Consensus 71 ~~~~~~~~~~~~~~~~-~~~~~~~l~~~~l~------------~~~------------l~~~p~llllDEp-~~LD~~~~ 124 (193)
+.+... ......... .....+.++.+++. .++ ++.+|+++||||| ++||+.+.
T Consensus 183 i~~~~~-~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~ 261 (329)
T PRK14257 183 VAYGPR-NNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIAT 261 (329)
T ss_pred HHhHHH-hcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHH
Confidence 543211 000000000 00112223333321 111 7899999999999 69999999
Q ss_pred chHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 125 SFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 125 ~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
..+.+.++.+.+++|||++ ||+++.+.++||++
T Consensus 262 ~~i~~~i~~l~~~~Tii~i------TH~l~~i~~~~Dri 294 (329)
T PRK14257 262 AKIEELILELKKKYSIIIV------THSMAQAQRISDET 294 (329)
T ss_pred HHHHHHHHHHhcCCEEEEE------eCCHHHHHHhCCEE
Confidence 8899999888778999999 99999999999994
No 273
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.94 E-value=1.8e-27 Score=212.32 Aligned_cols=179 Identities=13% Similarity=0.165 Sum_probs=126.6
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh--hccCCceeeEEEeecCC-cccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE--IRQGGQRVGFEVVTLDD-RRAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~--~~~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~ 77 (193)
|+|++||.+||+|+||||||||+|+|+|+++|++|+|.+||.+... ....|+++||++|++.. ..+..+|+.+..+.
T Consensus 494 L~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~ 573 (709)
T COG2274 494 LEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPE 573 (709)
T ss_pred EEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCC
Confidence 5799999999999999999999999999999999999999999854 34567899999998732 34566676554332
Q ss_pred CCCCCcc---cceeeehhhhhhh--ccc--------cc------------ccCCCCCEEEEecC-CCccccccchHHHHH
Q 029421 78 SYRWPTV---GRYKVDVASFEAI--ALP--------EL------------QVGADTDLFVIDEV-GKMELFSSSFFPAVL 131 (193)
Q Consensus 78 ~~~~~~~---~~~~~~~~~l~~~--~l~--------~~------------~l~~~p~llllDEp-~~LD~~~~~~~~~ll 131 (193)
.. .... ....-..+....+ |.. .+ ++..+|++|||||| ++||+.+.+.+.+-+
T Consensus 574 ~~-~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L 652 (709)
T COG2274 574 AT-DEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNL 652 (709)
T ss_pred CC-HHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHH
Confidence 11 0000 0000011111111 110 01 18899999999999 699999999999999
Q ss_pred HHHhCCCcEEEEecCCCCCCChhHHHHHhcCCCc--EEEEeCCCChhHHHHHHHHHHHH
Q 029421 132 RILESNIPVLASIPAPKSGRDIPAVARLRNHPGA--TIFTLSPGNRDSLKDNIYYQLTD 188 (193)
Q Consensus 132 ~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~~~--~~~~~~~~~~~~l~~~~~~~~~~ 188 (193)
..+..|+|+|++ +|+...+ +.||++-+ ....+..++.+++.+. ...+.+
T Consensus 653 ~~~~~~~T~I~I------aHRl~ti-~~adrIiVl~~Gkiv~~gs~~ell~~-~g~y~~ 703 (709)
T COG2274 653 LQILQGRTVIII------AHRLSTI-RSADRIIVLDQGKIVEQGSHEELLAQ-GGLYAR 703 (709)
T ss_pred HHHhcCCeEEEE------EccchHh-hhccEEEEccCCceeccCCHHHHHHh-cChHHH
Confidence 998889999999 9998766 46888421 1225566777777776 333333
No 274
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.94 E-value=2.3e-27 Score=191.86 Aligned_cols=162 Identities=15% Similarity=0.205 Sum_probs=114.7
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCCc-ccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDDR-RAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~~-~~~~~~~~~~~~~ 77 (193)
|+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++... ...+++++|+||++..+ .+..+|+....
T Consensus 25 l~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~tv~~nl~~~~-- 101 (275)
T cd03289 25 FSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYG-- 101 (275)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEEEECCCcccchhhHHHHhhhcc--
Confidence 5789999999999999999999999999998 789999999987432 23356899999987321 24445542110
Q ss_pred CCCCCcccceeeehhhhhhhcccc-------------------cc------------cCCCCCEEEEecC-CCccccccc
Q 029421 78 SYRWPTVGRYKVDVASFEAIALPE-------------------LQ------------VGADTDLFVIDEV-GKMELFSSS 125 (193)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~l~~-------------------~~------------l~~~p~llllDEp-~~LD~~~~~ 125 (193)
.... ....+.++.+++.. ++ ++.+|+++||||| ++||+.++.
T Consensus 102 --~~~~----~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~ 175 (275)
T cd03289 102 --KWSD----EEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQ 175 (275)
T ss_pred --CCCH----HHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHH
Confidence 0000 11122223333211 22 8899999999999 699999999
Q ss_pred hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHHH
Q 029421 126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLKD 180 (193)
Q Consensus 126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~~ 180 (193)
.+.++++.+..++|||++ ||+++.+.. ||++ ++.+. ..+..+++.+
T Consensus 176 ~l~~~l~~~~~~~tii~i------sH~~~~i~~-~dri~vl~~G~i~--~~g~~~~l~~ 225 (275)
T cd03289 176 VIRKTLKQAFADCTVILS------EHRIEAMLE-CQRFLVIEENKVR--QYDSIQKLLN 225 (275)
T ss_pred HHHHHHHHhcCCCEEEEE------ECCHHHHHh-CCEEEEecCCeEe--ecCCHHHHhh
Confidence 999999887668999999 999988764 8984 23333 3345555554
No 275
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.94 E-value=3.3e-27 Score=173.87 Aligned_cols=116 Identities=17% Similarity=0.206 Sum_probs=94.3
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecCCcccccccccCCCCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPLASINASSPESYR 80 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~ 80 (193)
|++++||+++|+||||||||||+++|+|+++|++|+|.++|. ..++|++| + ..
T Consensus 21 ~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~---------~~i~~~~~-------------l----S~- 73 (144)
T cd03221 21 LTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST---------VKIGYFEQ-------------L----SG- 73 (144)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe---------EEEEEEcc-------------C----CH-
Confidence 578999999999999999999999999999999999999883 36788876 0 00
Q ss_pred CCcccceeeehhhhhhhcccccccCCCCCEEEEecC-CCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHH
Q 029421 81 WPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEV-GKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARL 159 (193)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~ 159 (193)
-..+++.+ ...++.+|+++++||| ++||+.++..+.++++.+ +.|+|++ ||+.+++..+
T Consensus 74 -----------G~~~rv~l-aral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~------th~~~~~~~~ 133 (144)
T cd03221 74 -----------GEKMRLAL-AKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILV------SHDRYFLDQV 133 (144)
T ss_pred -----------HHHHHHHH-HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEE------ECCHHHHHHh
Confidence 00111121 1236789999999999 699999998888888776 4799999 9999999999
Q ss_pred hcCC
Q 029421 160 RNHP 163 (193)
Q Consensus 160 ~d~~ 163 (193)
||++
T Consensus 134 ~d~v 137 (144)
T cd03221 134 ATKI 137 (144)
T ss_pred CCEE
Confidence 9884
No 276
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.94 E-value=3.2e-27 Score=183.58 Aligned_cols=171 Identities=18% Similarity=0.168 Sum_probs=116.6
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecCCcccccccccCCCCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPLASINASSPESYR 80 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~ 80 (193)
|++.+||.+||+|+||||||||+|+|+|.++|++|+|.++|+..+-. .-..||.| ..+..+|+.+... ...
T Consensus 48 f~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li---~lg~Gf~p-----elTGreNi~l~~~-~~G 118 (249)
T COG1134 48 FEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLI---ELGAGFDP-----ELTGRENIYLRGL-ILG 118 (249)
T ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhh---hcccCCCc-----ccchHHHHHHHHH-HhC
Confidence 68999999999999999999999999999999999999999765322 12344443 3555555433211 111
Q ss_pred CCcccceeeehhhhh---------------------hhcccccccCCCCCEEEEecC-CCccccccchHHHHHHHHh-CC
Q 029421 81 WPTVGRYKVDVASFE---------------------AIALPELQVGADTDLFVIDEV-GKMELFSSSFFPAVLRILE-SN 137 (193)
Q Consensus 81 ~~~~~~~~~~~~~l~---------------------~~~l~~~~l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~-~g 137 (193)
....+......+..+ +++++ .+...+|++||+||. +--|+.-++...+.+..+. ++
T Consensus 119 ~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFs-ia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~ 197 (249)
T COG1134 119 LTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFS-VATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKN 197 (249)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHh-hhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcC
Confidence 111111111111111 11111 126689999999999 8889988888888888874 49
Q ss_pred CcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHHHHHHHHHHHH
Q 029421 138 IPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLKDNIYYQLTDA 189 (193)
Q Consensus 138 ~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~~~~~~~~~~~ 189 (193)
.|+|+| |||++.+.++||+. +|.+... ++.+++.+.+.......
T Consensus 198 ~tiv~V------SHd~~~I~~~Cd~~i~l~~G~i~~~--G~~~~vi~~Y~~~~~~~ 245 (249)
T COG1134 198 KTIVLV------SHDLGAIKQYCDRAIWLEHGQIRME--GSPEEVIPAYEEDLADR 245 (249)
T ss_pred CEEEEE------ECCHHHHHHhcCeeEEEeCCEEEEc--CCHHHHHHHHHHhhhhh
Confidence 999999 99999999999993 3444333 46666776666655443
No 277
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.94 E-value=6.6e-28 Score=181.59 Aligned_cols=173 Identities=16% Similarity=0.196 Sum_probs=129.7
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEec-eEchhh---ccCCceeeEEEeec--CCcccccccccCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQG-FYTGEI---RQGGQRVGFEVVTL--DDRRAPLASINAS 74 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g-~~~~~~---~~~~~~ig~~~q~~--~~~~~~~~~~~~~ 74 (193)
|++.+||.-+|+|||||||||+|-.|+|-.+|+.|+++++| .++... ...+..||-=||.| +...++++|+.+.
T Consensus 26 ~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA 105 (249)
T COG4674 26 FSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELA 105 (249)
T ss_pred EEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccCccccCCeehhhccHHHHHHHH
Confidence 67899999999999999999999999999999999999999 665433 33355677667876 5567888887665
Q ss_pred CCCCCCC-------Ccccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccch
Q 029421 75 SPESYRW-------PTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSF 126 (193)
Q Consensus 75 ~~~~~~~-------~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~ 126 (193)
......+ .......+..+.+...++.+.. ++++|++|++||| +||--.....
T Consensus 106 ~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~ 185 (249)
T COG4674 106 LNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEK 185 (249)
T ss_pred hcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHH
Confidence 4322111 1112223455667766665432 7899999999999 7998888888
Q ss_pred HHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCCCcEE--EEeCCCChhHHH
Q 029421 127 FPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHPGATI--FTLSPGNRDSLK 179 (193)
Q Consensus 127 ~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~~~~~--~~~~~~~~~~l~ 179 (193)
.-++++.++...+|+++ .||+.++.++|+++.+.- -++..++.++++
T Consensus 186 taeLl~~la~~hsilVV------EHDM~Fvr~~A~~VTVlh~G~VL~EGsld~v~ 234 (249)
T COG4674 186 TAELLKSLAGKHSILVV------EHDMGFVREIADKVTVLHEGSVLAEGSLDEVQ 234 (249)
T ss_pred HHHHHHHHhcCceEEEE------eccHHHHHHhhheeEEEeccceeecccHHHhh
Confidence 99999999988999999 999999999999853221 144555555544
No 278
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.94 E-value=2.4e-27 Score=189.93 Aligned_cols=149 Identities=17% Similarity=0.192 Sum_probs=106.5
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeE-----------EeceEchhhc----cCCceeeEEEeecCCcc-c
Q 029421 3 AGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLK-----------VQGFYTGEIR----QGGQRVGFEVVTLDDRR-A 66 (193)
Q Consensus 3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~-----------~~g~~~~~~~----~~~~~ig~~~q~~~~~~-~ 66 (193)
+.+|++++|+||||||||||+++|+|+++|++|+|+ ++|.+..... .....++|++|.+.... .
T Consensus 23 i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 102 (255)
T cd03236 23 PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVKPQYVDLIPKA 102 (255)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHhhhcccceeeecchhccCchH
Confidence 689999999999999999999999999999999996 6777653221 11224678877652111 1
Q ss_pred ccccccCCCCCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccc
Q 029421 67 PLASINASSPESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSS 125 (193)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~ 125 (193)
...++.... ..........+.++.+++.... ++.+|+++|+||| ++||+.++.
T Consensus 103 ~~~~i~~~l------~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~~~~ 176 (255)
T cd03236 103 VKGKVGELL------KKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRL 176 (255)
T ss_pred HHHHHHHHh------chhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHH
Confidence 111111100 0001112234555555554321 7889999999999 699999999
Q ss_pred hHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 126 FFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 126 ~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+.++++.+++ |+|||++ |||++.+.++||++
T Consensus 177 ~l~~~l~~l~~~~~tIIii------SHd~~~~~~~ad~i 209 (255)
T cd03236 177 NAARLIRELAEDDNYVLVV------EHDLAVLDYLSDYI 209 (255)
T ss_pred HHHHHHHHHHhcCCEEEEE------ECCHHHHHHhCCEE
Confidence 99999998876 8999999 99999999999983
No 279
>PRK13409 putative ATPase RIL; Provisional
Probab=99.94 E-value=1.1e-26 Score=205.01 Aligned_cols=140 Identities=15% Similarity=0.244 Sum_probs=107.7
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecC--CcccccccccCCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD--DRRAPLASINASSPES 78 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~~~ 78 (193)
|+|.+||+++|+||||||||||+|+|+|+++|++|+|.++ .+++|+||++. ...++.+++..... .
T Consensus 360 ~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-----------~~i~y~~Q~~~~~~~~tv~e~l~~~~~-~ 427 (590)
T PRK13409 360 GEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-----------LKISYKPQYIKPDYDGTVEDLLRSITD-D 427 (590)
T ss_pred eEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-----------eeEEEecccccCCCCCcHHHHHHHHhh-h
Confidence 5689999999999999999999999999999999999875 15899999763 23344444332110 0
Q ss_pred CCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHHHhC-
Q 029421 79 YRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILES- 136 (193)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~- 136 (193)
.. ......++++.+++... + ++.+|+++||||| ++||+.++..+.++++.+.+
T Consensus 428 --~~---~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~ 502 (590)
T PRK13409 428 --LG---SSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEE 502 (590)
T ss_pred --cC---hHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHh
Confidence 00 01123355666665432 1 7899999999999 69999999999999998853
Q ss_pred -CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 137 -NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 137 -g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
|.|||++ |||+.++..+||++
T Consensus 503 ~g~tviiv------sHD~~~~~~~aDrv 524 (590)
T PRK13409 503 REATALVV------DHDIYMIDYISDRL 524 (590)
T ss_pred CCCEEEEE------eCCHHHHHHhCCEE
Confidence 8999999 99999999999983
No 280
>PLN03211 ABC transporter G-25; Provisional
Probab=99.94 E-value=3.4e-27 Score=210.67 Aligned_cols=155 Identities=15% Similarity=0.171 Sum_probs=116.2
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccC--CCCeEEeceEchhhccCCceeeEEEeec--CCcccccccccCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKAS--NPSLKVQGFYTGEIRQGGQRVGFEVVTL--DDRRAPLASINASSP 76 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~--~G~i~~~g~~~~~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~ 76 (193)
+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|++... ...+++||++|+. .+..++.+++.+...
T Consensus 89 ~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~--~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~ 166 (659)
T PLN03211 89 GMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK--QILKRTGFVTQDDILYPHLTVRETLVFCSL 166 (659)
T ss_pred EEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECch--hhccceEEECcccccCCcCCHHHHHHHHHH
Confidence 468999999999999999999999999999885 8999999988642 2235699999986 334566666544211
Q ss_pred CCC--CCCcccceeeehhhhhhhcccc-------------cc------------cCCCCCEEEEecC-CCccccccchHH
Q 029421 77 ESY--RWPTVGRYKVDVASFEAIALPE-------------LQ------------VGADTDLFVIDEV-GKMELFSSSFFP 128 (193)
Q Consensus 77 ~~~--~~~~~~~~~~~~~~l~~~~l~~-------------~~------------l~~~p~llllDEp-~~LD~~~~~~~~ 128 (193)
... ............+.++.+++.+ ++ ++.+|++++|||| +|||+.++..+.
T Consensus 167 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~ 246 (659)
T PLN03211 167 LRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLV 246 (659)
T ss_pred hCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHH
Confidence 100 0011111123345566666632 22 7899999999999 699999999999
Q ss_pred HHHHHHhC-CCcEEEEecCCCCCCChh-HHHHHhcCC
Q 029421 129 AVLRILES-NIPVLASIPAPKSGRDIP-AVARLRNHP 163 (193)
Q Consensus 129 ~ll~~l~~-g~tvl~~~~~~~~tHd~~-~~~~~~d~~ 163 (193)
++++.+++ |.|||++ +|+++ .+.+++|++
T Consensus 247 ~~L~~l~~~g~TvI~~------sH~~~~~i~~~~D~i 277 (659)
T PLN03211 247 LTLGSLAQKGKTIVTS------MHQPSSRVYQMFDSV 277 (659)
T ss_pred HHHHHHHhCCCEEEEE------ecCCCHHHHHhhceE
Confidence 99999876 9999999 99987 578899984
No 281
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=1.5e-26 Score=172.58 Aligned_cols=127 Identities=22% Similarity=0.311 Sum_probs=100.5
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh--hccCCceeeEEEeecCCcccccccccCCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE--IRQGGQRVGFEVVTLDDRRAPLASINASSPES 78 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~--~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~ 78 (193)
|++++|++++|+||||||||||+++|+|+++|++|+|.++|..... .......++|++| + .
T Consensus 20 ~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~q-------------l----S 82 (157)
T cd00267 20 LTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQ-------------L----S 82 (157)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEee-------------C----C
Confidence 5789999999999999999999999999999999999999987642 1223456888887 0 0
Q ss_pred CCCCcccceeeehhhhhhhcccccccCCCCCEEEEecC-CCccccccchHHHHHHHHhC-CCcEEEEecCCCCCCChhHH
Q 029421 79 YRWPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEV-GKMELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIPAV 156 (193)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~ 156 (193)
. +. .+++.+ ...++.+|+++++||| ++||+.++..+.+++..+.+ +.|++++ ||+..++
T Consensus 83 ~-----G~-------~~r~~l-~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~------sh~~~~~ 143 (157)
T cd00267 83 G-----GQ-------RQRVAL-ARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIV------THDPELA 143 (157)
T ss_pred H-----HH-------HHHHHH-HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEE------eCCHHHH
Confidence 0 00 011111 1125678999999999 69999999999999988766 7899999 9999999
Q ss_pred HHHhcCC
Q 029421 157 ARLRNHP 163 (193)
Q Consensus 157 ~~~~d~~ 163 (193)
..+||++
T Consensus 144 ~~~~d~i 150 (157)
T cd00267 144 ELAADRV 150 (157)
T ss_pred HHhCCEE
Confidence 9988873
No 282
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.94 E-value=1e-26 Score=200.04 Aligned_cols=165 Identities=12% Similarity=0.127 Sum_probs=111.7
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecCCcccccccccCCCCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPLASINASSPESYR 80 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~ 80 (193)
|+|++|++++|+||||||||||+++|+|+++|++|+|.++|.... +++.+ ...+..++.+++.+.... ..
T Consensus 45 fsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~--------i~~~~-~l~~~lTV~EnL~l~~~~-~~ 114 (549)
T PRK13545 45 FEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAAL--------IAISS-GLNGQLTGIENIELKGLM-MG 114 (549)
T ss_pred EEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeee--------EEecc-ccCCCCcHHHHHHhhhhh-cC
Confidence 578999999999999999999999999999999999999986521 11111 112234455554321110 01
Q ss_pred CCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHHHhC-CC
Q 029421 81 WPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILES-NI 138 (193)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~-g~ 138 (193)
...........++++.+++... + ++.+|+++||||| ++||+.++..+.++++.+++ |.
T Consensus 115 ~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~ 194 (549)
T PRK13545 115 LTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGK 194 (549)
T ss_pred CCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCC
Confidence 1111111112234444444321 1 7899999999999 69999999999999988866 89
Q ss_pred cEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHHHHHH
Q 029421 139 PVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLKDNIY 183 (193)
Q Consensus 139 tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~~~~~ 183 (193)
|||++ |||++++.++||++ ++.+.. .+..+++..++.
T Consensus 195 TIIIV------SHdl~~i~~l~DrIivL~~GkIv~--~G~~~el~~~~~ 235 (549)
T PRK13545 195 TIFFI------SHSLSQVKSFCTKALWLHYGQVKE--YGDIKEVVDHYD 235 (549)
T ss_pred EEEEE------ECCHHHHHHhCCEEEEEECCEEEE--ECCHHHHHhhHH
Confidence 99999 99999999999984 344332 244555555543
No 283
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.94 E-value=5.8e-27 Score=185.16 Aligned_cols=139 Identities=17% Similarity=0.234 Sum_probs=101.3
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccC--C-------ceeeEEEeecCCcccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQG--G-------QRVGFEVVTLDDRRAPLASI 71 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~--~-------~~ig~~~q~~~~~~~~~~~~ 71 (193)
|+|++||+++|+|+||||||||-|+|+|+++|++|+|.++|+++...... . ..+|. +++. . .
T Consensus 34 f~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl-~~~~------~--~ 104 (268)
T COG4608 34 FSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGL-PEEF------L--Y 104 (268)
T ss_pred EEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCC-CHHH------h--h
Confidence 68999999999999999999999999999999999999999886432210 0 11120 0000 0 0
Q ss_pred cCCCCCCCCCCcccceeeehhhhhhhcccccccCCCCCEEEEecC-CCccccccchHHHHHHHHhC--CCcEEEEecCCC
Q 029421 72 NASSPESYRWPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEV-GKMELFSSSFFPAVLRILES--NIPVLASIPAPK 148 (193)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~--g~tvl~~~~~~~ 148 (193)
.++..-.. --.+++++. .+++.+|+++++||| ++||...+.++.+++..+++ |.|.+++
T Consensus 105 ryPhelSG------------GQrQRi~IA-RALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFI----- 166 (268)
T COG4608 105 RYPHELSG------------GQRQRIGIA-RALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFI----- 166 (268)
T ss_pred cCCcccCc------------hhhhhHHHH-HHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEE-----
Confidence 01100000 011222221 236789999999999 79999999999999999875 9999999
Q ss_pred CCCChhHHHHHhcCCCcEE
Q 029421 149 SGRDIPAVARLRNHPGATI 167 (193)
Q Consensus 149 ~tHd~~~~~~~~d~~~~~~ 167 (193)
|||+..+..+||++.+..
T Consensus 167 -sHDL~vv~~isdri~VMy 184 (268)
T COG4608 167 -SHDLSVVRYISDRIAVMY 184 (268)
T ss_pred -EEEHHhhhhhcccEEEEe
Confidence 999999999999965443
No 284
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.94 E-value=7.4e-27 Score=207.03 Aligned_cols=162 Identities=12% Similarity=0.157 Sum_probs=117.3
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCCc-ccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDDR-RAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~~-~~~~~~~~~~~~~ 77 (193)
|++++|+.++|+|+||||||||+++|+|+++|++|+|.++|.++... ...+++++|++|++.-+ .+..+|+.+...
T Consensus 362 l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~- 440 (592)
T PRK10790 362 LSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRD- 440 (592)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCCC-
Confidence 57899999999999999999999999999999999999999987543 34568899999998322 355666554321
Q ss_pred CCCCCcccceeeehhhhhhhccc-----------c--------cc------------cCCCCCEEEEecC-CCccccccc
Q 029421 78 SYRWPTVGRYKVDVASFEAIALP-----------E--------LQ------------VGADTDLFVIDEV-GKMELFSSS 125 (193)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~l~-----------~--------~~------------l~~~p~llllDEp-~~LD~~~~~ 125 (193)
. . .....+.++..++. . ++ ++.+|+++||||| ++||+.+..
T Consensus 441 ~---~----d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~ 513 (592)
T PRK10790 441 I---S----EEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQ 513 (592)
T ss_pred C---C----HHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHH
Confidence 0 0 00111222222111 0 11 7899999999999 699999998
Q ss_pred hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHH
Q 029421 126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLK 179 (193)
Q Consensus 126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~ 179 (193)
.+.+.++.+.+++|+|++ ||++..+. .||++ +|.+. ..++.+++.
T Consensus 514 ~i~~~l~~~~~~~tvIiv------tHr~~~l~-~~D~ii~l~~G~i~--~~G~~~~L~ 562 (592)
T PRK10790 514 AIQQALAAVREHTTLVVI------AHRLSTIV-EADTILVLHRGQAV--EQGTHQQLL 562 (592)
T ss_pred HHHHHHHHHhCCCEEEEE------ecchHHHH-hCCEEEEEECCEEE--EEcCHHHHH
Confidence 888888887778999999 99987655 58883 34443 334555554
No 285
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.94 E-value=6.8e-27 Score=206.84 Aligned_cols=171 Identities=16% Similarity=0.217 Sum_probs=117.3
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCC-cccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDD-RRAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~ 77 (193)
|+|++|+.++|+||||||||||+++|+|+++|++|+|.++|.+.... ...++.++|+||++.- ..+..+|+.+....
T Consensus 364 l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~ 443 (582)
T PRK11176 364 FKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTE 443 (582)
T ss_pred EEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCC
Confidence 57899999999999999999999999999999999999999987543 2346789999999732 23556666543211
Q ss_pred CCCCCccc---ceeeehhhhhhh--ccc--------ccc------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421 78 SYRWPTVG---RYKVDVASFEAI--ALP--------ELQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVL 131 (193)
Q Consensus 78 ~~~~~~~~---~~~~~~~~l~~~--~l~--------~~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll 131 (193)
........ ......+.++.+ |+. .++ ++.+|+++||||| ++||+.+...+.+.+
T Consensus 444 ~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l 523 (582)
T PRK11176 444 QYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAAL 523 (582)
T ss_pred CCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHH
Confidence 00000000 000001111111 111 111 7899999999999 699999998888888
Q ss_pred HHHhCCCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHHH
Q 029421 132 RILESNIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLKD 180 (193)
Q Consensus 132 ~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~~ 180 (193)
..+.+++|+|++ ||+...+ +.||++ ++.+. ..++.+++.+
T Consensus 524 ~~~~~~~tvI~V------tHr~~~~-~~~D~Ii~l~~g~i~--e~g~~~~l~~ 567 (582)
T PRK11176 524 DELQKNRTSLVI------AHRLSTI-EKADEILVVEDGEIV--ERGTHAELLA 567 (582)
T ss_pred HHHhCCCEEEEE------ecchHHH-HhCCEEEEEECCEEE--EeCCHHHHHh
Confidence 887778999999 9998655 468984 23333 3445555554
No 286
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=2.4e-26 Score=201.39 Aligned_cols=146 Identities=17% Similarity=0.256 Sum_probs=105.6
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecC--CcccccccccCCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD--DRRAPLASINASSPES 78 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~~~ 78 (193)
|+|++|++++|+||||||||||+|+|+|+++|++|+|.++|. ..+||++|++. ...++.+++.+.....
T Consensus 22 l~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~i~~~~q~~~~~~~~tv~e~l~~~~~~~ 92 (530)
T PRK15064 22 VKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN---------ERLGKLRQDQFAFEEFTVLDTVIMGHTEL 92 (530)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC---------CEEEEEeccCCcCCCCcHHHHHHHhhHHH
Confidence 678999999999999999999999999999999999999862 35899999752 2234444332211000
Q ss_pred ----------CCCC---------------------cccceeeehhhhhhhcccc---------cc------------cCC
Q 029421 79 ----------YRWP---------------------TVGRYKVDVASFEAIALPE---------LQ------------VGA 106 (193)
Q Consensus 79 ----------~~~~---------------------~~~~~~~~~~~l~~~~l~~---------~~------------l~~ 106 (193)
.... .........+.++.+++.. ++ ++.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq~qrv~lA~aL~~ 172 (530)
T PRK15064 93 WEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFS 172 (530)
T ss_pred HHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHHHHHHHHHHHHhc
Confidence 0000 0000112334555566532 11 789
Q ss_pred CCCEEEEecC-CCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 107 DTDLFVIDEV-GKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 107 ~p~llllDEp-~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
+|++|||||| ++||+.++..+.++++. .|.|||++ |||.+.+.++||++
T Consensus 173 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiiiv------sHd~~~~~~~~d~i 222 (530)
T PRK15064 173 NPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMIII------SHDRHFLNSVCTHM 222 (530)
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEEE------eCCHHHHHhhcceE
Confidence 9999999999 69999999888888753 38999999 99999999999983
No 287
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.93 E-value=1.1e-26 Score=205.63 Aligned_cols=169 Identities=17% Similarity=0.227 Sum_probs=118.3
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCC-cccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDD-RRAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~ 77 (193)
|+|++|+.++|+||||||||||+++|+|++ |++|+|.++|.++.+. ...++.++|++|++.- ..+..+|+.+..+.
T Consensus 371 l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~ 449 (588)
T PRK11174 371 FTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPD 449 (588)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCC
Confidence 578999999999999999999999999999 9999999999987543 3446789999999832 24666776554221
Q ss_pred CCCCCccc---ceeeehhhhhhh--cccc--------cc------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421 78 SYRWPTVG---RYKVDVASFEAI--ALPE--------LQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVL 131 (193)
Q Consensus 78 ~~~~~~~~---~~~~~~~~l~~~--~l~~--------~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll 131 (193)
.. ..... +.....+..+.+ |+.. ++ ++.+|+++||||| ++||+.+...+.+.+
T Consensus 450 ~~-~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l 528 (588)
T PRK11174 450 AS-DEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQAL 528 (588)
T ss_pred CC-HHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence 10 00000 000001111111 1111 11 8899999999999 699999998888888
Q ss_pred HHHhCCCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHHH
Q 029421 132 RILESNIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLKD 180 (193)
Q Consensus 132 ~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~~ 180 (193)
..+.+++|+|++ ||+++.+. .||++ +|.+ +..++.+++.+
T Consensus 529 ~~~~~~~TvIiI------tHrl~~i~-~aD~Iivl~~G~i--~e~G~~~eL~~ 572 (588)
T PRK11174 529 NAASRRQTTLMV------THQLEDLA-QWDQIWVMQDGQI--VQQGDYAELSQ 572 (588)
T ss_pred HHHhCCCEEEEE------ecChHHHH-hCCEEEEEeCCeE--eecCCHHHHHh
Confidence 887778999999 99987664 58883 2333 34566666654
No 288
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.93 E-value=1e-26 Score=209.46 Aligned_cols=172 Identities=16% Similarity=0.185 Sum_probs=120.8
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCC-cccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDD-RRAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~ 77 (193)
|+|++|+.++|+||||||||||+++|+|+++|++|+|.++|.++... ...++.++|++|++.. ..+..+|+.+....
T Consensus 486 l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~ 565 (694)
T TIGR03375 486 LTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPY 565 (694)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCC
Confidence 57899999999999999999999999999999999999999987543 3456789999998732 23566676543221
Q ss_pred CCCCCccc---ceeeehhhhhhh--ccc--------ccc------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421 78 SYRWPTVG---RYKVDVASFEAI--ALP--------ELQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVL 131 (193)
Q Consensus 78 ~~~~~~~~---~~~~~~~~l~~~--~l~--------~~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll 131 (193)
. ...... +.....+.++.+ |+. .++ ++.+|+++||||| ++||+.+...+.+.+
T Consensus 566 ~-~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l 644 (694)
T TIGR03375 566 A-DDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRL 644 (694)
T ss_pred C-CHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH
Confidence 0 000000 000001111111 111 111 7899999999999 699999999999888
Q ss_pred HHHhCCCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHHHHH
Q 029421 132 RILESNIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLKDNI 182 (193)
Q Consensus 132 ~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~~~~ 182 (193)
..+.+++|+|++ ||+++.+ +.||++ +|.+ +..++.+++.++.
T Consensus 645 ~~~~~~~T~iiI------tHrl~~~-~~~D~iivl~~G~i--~e~G~~~eLl~~~ 690 (694)
T TIGR03375 645 KRWLAGKTLVLV------THRTSLL-DLVDRIIVMDNGRI--VADGPKDQVLEAL 690 (694)
T ss_pred HHHhCCCEEEEE------ecCHHHH-HhCCEEEEEeCCEE--EeeCCHHHHHHHh
Confidence 888778999999 9998766 578883 2333 3445677776654
No 289
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.93 E-value=9.1e-27 Score=202.31 Aligned_cols=156 Identities=15% Similarity=0.243 Sum_probs=109.5
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhccc-CCCCeEEeceEchh---hccCCceeeEEEeecCC--c--cccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKA-SNPSLKVQGFYTGE---IRQGGQRVGFEVVTLDD--R--RAPLASIN 72 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~-~~G~i~~~g~~~~~---~~~~~~~ig~~~q~~~~--~--~~~~~~~~ 72 (193)
|+|++|++++|+||||||||||+|+|+|+.++ ++|+|.++|++... ....++.+||++|++.. . .+..+...
T Consensus 281 l~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~ 360 (490)
T PRK10938 281 WQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVIL 360 (490)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHH
Confidence 57899999999999999999999999998876 69999999976421 11234679999997521 1 11111111
Q ss_pred CCCCC---CCCCCcccceeeehhhhhhhcccc-cc--------------------cCCCCCEEEEecC-CCccccccchH
Q 029421 73 ASSPE---SYRWPTVGRYKVDVASFEAIALPE-LQ--------------------VGADTDLFVIDEV-GKMELFSSSFF 127 (193)
Q Consensus 73 ~~~~~---~~~~~~~~~~~~~~~~l~~~~l~~-~~--------------------l~~~p~llllDEp-~~LD~~~~~~~ 127 (193)
..... ..............+.++.+++.. .. ++.+|+++||||| +|||+.++..+
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l 440 (490)
T PRK10938 361 SGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLV 440 (490)
T ss_pred hccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHH
Confidence 11000 000000111123445666777654 21 8899999999999 69999999999
Q ss_pred HHHHHHHhC-C-CcEEEEecCCCCCCChhHHHH-HhcC
Q 029421 128 PAVLRILES-N-IPVLASIPAPKSGRDIPAVAR-LRNH 162 (193)
Q Consensus 128 ~~ll~~l~~-g-~tvl~~~~~~~~tHd~~~~~~-~~d~ 162 (193)
.++++.+++ + .|||++ |||++++.+ +||+
T Consensus 441 ~~~L~~l~~~~~~tviiv------sHd~~~~~~~~~d~ 472 (490)
T PRK10938 441 RRFVDVLISEGETQLLFV------SHHAEDAPACITHR 472 (490)
T ss_pred HHHHHHHHhcCCcEEEEE------ecchhhhhhhhhee
Confidence 999998865 5 569999 999999987 5787
No 290
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.93 E-value=1.5e-26 Score=208.12 Aligned_cols=161 Identities=14% Similarity=0.225 Sum_probs=115.8
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCC-cccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDD-RRAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~ 77 (193)
|+|++|+.++|+||||||||||+|+|+|+++|++|+|.+||.++.+. ...++.+||++|++.- ..+..+|+.+...
T Consensus 474 l~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~- 552 (686)
T TIGR03797 474 LQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAP- 552 (686)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCC-
Confidence 57899999999999999999999999999999999999999997533 3456789999999832 2355666654321
Q ss_pred CCCCCcccceeeehhhhhhhccc-------------------ccc------------cCCCCCEEEEecC-CCccccccc
Q 029421 78 SYRWPTVGRYKVDVASFEAIALP-------------------ELQ------------VGADTDLFVIDEV-GKMELFSSS 125 (193)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~l~-------------------~~~------------l~~~p~llllDEp-~~LD~~~~~ 125 (193)
. . .+...+.++..++. .++ ++.+|+++||||| ++||+.+.+
T Consensus 553 ~---~----~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~ 625 (686)
T TIGR03797 553 L---T----LDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQA 625 (686)
T ss_pred C---C----HHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHH
Confidence 0 0 00111112211111 111 8899999999999 699999988
Q ss_pred hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHHH
Q 029421 126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLKD 180 (193)
Q Consensus 126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~~ 180 (193)
.+.+.++.+ ++|+|++ ||+++.+. .||++ +|.++ ..++.+++.+
T Consensus 626 ~i~~~L~~~--~~T~IiI------tHr~~~i~-~~D~Iivl~~G~iv--~~G~~~~Ll~ 673 (686)
T TIGR03797 626 IVSESLERL--KVTRIVI------AHRLSTIR-NADRIYVLDAGRVV--QQGTYDELMA 673 (686)
T ss_pred HHHHHHHHh--CCeEEEE------ecChHHHH-cCCEEEEEECCEEE--EECCHHHHHh
Confidence 887777665 6899999 99987765 58884 34433 3456666654
No 291
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.93 E-value=9.1e-27 Score=181.05 Aligned_cols=156 Identities=19% Similarity=0.221 Sum_probs=112.5
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEch--hh-ccCCceeeEEEeecC----CcccccccccC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTG--EI-RQGGQRVGFEVVTLD----DRRAPLASINA 73 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~--~~-~~~~~~ig~~~q~~~----~~~~~~~~~~~ 73 (193)
++|++||..+|+||||||||||+++++|..+|++|.+.+.|+... .. .+.+++||++..... ...++.+.+.-
T Consensus 52 W~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlS 131 (257)
T COG1119 52 WQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLS 131 (257)
T ss_pred eeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCccCHHHHhhcccccccceeeee
Confidence 579999999999999999999999999999999999999998863 22 556788999865431 11222222111
Q ss_pred CCCCCCCC----Ccccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHH
Q 029421 74 SSPESYRW----PTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFP 128 (193)
Q Consensus 74 ~~~~~~~~----~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~ 128 (193)
........ ........+..+++.+++.++. ++.+|++|||||| +|||..+++.+.
T Consensus 132 g~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll 211 (257)
T COG1119 132 GFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLL 211 (257)
T ss_pred cccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHH
Confidence 11111111 1112223445566777765442 8899999999999 799999998888
Q ss_pred HHHHHHhC---CCcEEEEecCCCCCCChhHHHHHhcC
Q 029421 129 AVLRILES---NIPVLASIPAPKSGRDIPAVARLRNH 162 (193)
Q Consensus 129 ~ll~~l~~---g~tvl~~~~~~~~tHd~~~~~~~~d~ 162 (193)
+.+..+.. +.++|+| ||..+++....++
T Consensus 212 ~~l~~~~~~~~~~~ll~V------tHh~eEi~~~~th 242 (257)
T COG1119 212 NRLEELAASPGAPALLFV------THHAEEIPPCFTH 242 (257)
T ss_pred HHHHHHhcCCCCceEEEE------Ecchhhcccccce
Confidence 88887753 7899999 9998888776665
No 292
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.93 E-value=1.6e-26 Score=206.53 Aligned_cols=154 Identities=16% Similarity=0.182 Sum_probs=114.9
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc------cCCceeeEEEeecC--Cccccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR------QGGQRVGFEVVTLD--DRRAPLASIN 72 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~------~~~~~ig~~~q~~~--~~~~~~~~~~ 72 (193)
|++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... ..++.++|++|++. +..+..+++.
T Consensus 29 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~ 108 (648)
T PRK10535 29 LDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVE 108 (648)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHH
Confidence 578999999999999999999999999999999999999999864321 12467999999873 2234455543
Q ss_pred CCCCCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421 73 ASSPESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVL 131 (193)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll 131 (193)
+... ..............+.++.+++.+.. ++.+|+++|+||| ++||+.+++.+.+++
T Consensus 109 ~~~~-~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll 187 (648)
T PRK10535 109 VPAV-YAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAIL 187 (648)
T ss_pred HHHH-HcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 3111 00111111122334556666654321 8899999999999 699999999999999
Q ss_pred HHHhC-CCcEEEEecCCCCCCChhHHHHHhcC
Q 029421 132 RILES-NIPVLASIPAPKSGRDIPAVARLRNH 162 (193)
Q Consensus 132 ~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~ 162 (193)
+.+++ |.|+|++ ||+.+.+. .||+
T Consensus 188 ~~l~~~g~tiliv------sH~~~~~~-~~d~ 212 (648)
T PRK10535 188 HQLRDRGHTVIIV------THDPQVAA-QAER 212 (648)
T ss_pred HHHHhcCCEEEEE------CCCHHHHH-hCCE
Confidence 98876 9999999 99998775 6888
No 293
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.93 E-value=2.1e-26 Score=203.94 Aligned_cols=155 Identities=15% Similarity=0.210 Sum_probs=110.4
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCC-cccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDD-RRAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~ 77 (193)
|++++|+.++|+|+||||||||+++|+|+++|++|+|.++|.++... ...++.++|+||++.- ..+..+|+.+....
T Consensus 356 l~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~ 435 (588)
T PRK13657 356 FEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPD 435 (588)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCC
Confidence 57899999999999999999999999999999999999999987543 2446789999999832 23556665543211
Q ss_pred CCCCCcccc---eeeehhhhhhh--ccc--------ccc------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421 78 SYRWPTVGR---YKVDVASFEAI--ALP--------ELQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVL 131 (193)
Q Consensus 78 ~~~~~~~~~---~~~~~~~l~~~--~l~--------~~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll 131 (193)
. ....... .....+.+..+ |+. .++ ++.+|+++||||| ++||+.+...+.+.+
T Consensus 436 ~-~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l 514 (588)
T PRK13657 436 A-TDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAAL 514 (588)
T ss_pred C-CHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence 0 0000000 00000111111 111 111 8899999999999 699999998888888
Q ss_pred HHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 132 RILESNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 132 ~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
..+.+++|+|++ ||+...+ +.||++
T Consensus 515 ~~~~~~~tvIii------tHr~~~~-~~~D~i 539 (588)
T PRK13657 515 DELMKGRTTFII------AHRLSTV-RNADRI 539 (588)
T ss_pred HHHhcCCEEEEE------EecHHHH-HhCCEE
Confidence 877668999999 9998765 568983
No 294
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.93 E-value=7.8e-27 Score=214.18 Aligned_cols=158 Identities=13% Similarity=0.153 Sum_probs=119.8
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh---hccCCceeeEEEeec--CCcccccccccCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE---IRQGGQRVGFEVVTL--DDRRAPLASINASS 75 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~---~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~ 75 (193)
|.|++||+.|++|+|||||||++++|.|..+|++|++.+.|.++.. ....++.+||+||.. .+.++..+.+.+-.
T Consensus 586 ~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~a 665 (885)
T KOG0059|consen 586 FAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYA 665 (885)
T ss_pred EEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccHHHHHHHHH
Confidence 4689999999999999999999999999999999999999988743 223578899999974 33445544432211
Q ss_pred CCCCCCCcccceeeehhhhhhhccccc--------------------ccCCCCCEEEEecC-CCccccccchHHHHHHHH
Q 029421 76 PESYRWPTVGRYKVDVASFEAIALPEL--------------------QVGADTDLFVIDEV-GKMELFSSSFFPAVLRIL 134 (193)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~l~~~--------------------~l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l 134 (193)
. ..+.+..+..+.+...++.+++... +++.+|++++|||| +|+||.+|..+++++..+
T Consensus 666 r-lrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~ 744 (885)
T KOG0059|consen 666 R-LRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARL 744 (885)
T ss_pred H-HcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHH
Confidence 1 1111221222234445555555432 18899999999999 799999999999999998
Q ss_pred hC-CCcEEEEecCCCCCCChhHHHHHhcCCCc
Q 029421 135 ES-NIPVLASIPAPKSGRDIPAVARLRNHPGA 165 (193)
Q Consensus 135 ~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~~~ 165 (193)
++ |+++|++ ||.+++++.+|+|.+.
T Consensus 745 ~k~g~aiiLT------SHsMeE~EaLCtR~aI 770 (885)
T KOG0059|consen 745 RKNGKAIILT------SHSMEEAEALCTRTAI 770 (885)
T ss_pred HhcCCEEEEE------cCCHHHHHHHhhhhhe
Confidence 87 6799999 9999999999999543
No 295
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.93 E-value=2e-26 Score=208.08 Aligned_cols=162 Identities=14% Similarity=0.171 Sum_probs=115.4
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCC-cccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDD-RRAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~ 77 (193)
|+|++|+.++|+||||||||||+++|+|+++|++|+|.+||.++.+. ...++.+||++|++.- ..+..+|+.+....
T Consensus 500 l~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~ 579 (710)
T TIGR03796 500 LTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPT 579 (710)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCC
Confidence 57899999999999999999999999999999999999999998543 3457889999999732 23556665543211
Q ss_pred CCCCCcccceeeehhhhhhhc-----------cc--------ccc------------cCCCCCEEEEecC-CCccccccc
Q 029421 78 SYRWPTVGRYKVDVASFEAIA-----------LP--------ELQ------------VGADTDLFVIDEV-GKMELFSSS 125 (193)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~-----------l~--------~~~------------l~~~p~llllDEp-~~LD~~~~~ 125 (193)
. . . +...+.++..+ +. .++ ++.+|+++||||| ++||+.+..
T Consensus 580 ~---~---~-~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~ 652 (710)
T TIGR03796 580 I---P---D-ADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEK 652 (710)
T ss_pred C---C---H-HHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHH
Confidence 0 0 0 00111111111 11 011 7899999999999 699999988
Q ss_pred hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHHH
Q 029421 126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLKD 180 (193)
Q Consensus 126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~~ 180 (193)
.+.+.++. .++|+|++ ||++..+. .||++ +|.++ ..++.+++.+
T Consensus 653 ~i~~~l~~--~~~T~Iii------tHrl~~i~-~~D~Iivl~~G~i~--~~G~~~~Ll~ 700 (710)
T TIGR03796 653 IIDDNLRR--RGCTCIIV------AHRLSTIR-DCDEIIVLERGKVV--QRGTHEELWA 700 (710)
T ss_pred HHHHHHHh--cCCEEEEE------ecCHHHHH-hCCEEEEEeCCEEE--EecCHHHHHH
Confidence 77777764 48999999 99987765 58983 33333 3456666654
No 296
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.93 E-value=1.8e-26 Score=202.16 Aligned_cols=140 Identities=18% Similarity=0.235 Sum_probs=104.6
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh-ccCCceeeEEEeecCC-cccccccccCCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI-RQGGQRVGFEVVTLDD-RRAPLASINASSPES 78 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~-~~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~~ 78 (193)
|++++|+.++|+||||||||||+++|+|+++|++|+|.++|.++.+. ...++.++|+||++.- ..+..+|+.+..+..
T Consensus 356 l~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~ 435 (529)
T TIGR02868 356 LDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDTTVRDNLRLGRPDA 435 (529)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCcccccccHHHHHhccCCCC
Confidence 57899999999999999999999999999999999999999987543 3346789999999842 235667765532211
Q ss_pred CCCCcccceeeehhhhhhhcc-----------c--------ccc------------cCCCCCEEEEecC-CCccccccch
Q 029421 79 YRWPTVGRYKVDVASFEAIAL-----------P--------ELQ------------VGADTDLFVIDEV-GKMELFSSSF 126 (193)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~l-----------~--------~~~------------l~~~p~llllDEp-~~LD~~~~~~ 126 (193)
. + +...+.++..++ . .++ ++.+|+++||||| ++||+.+...
T Consensus 436 ~------~-e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~ 508 (529)
T TIGR02868 436 T------D-EELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESE 508 (529)
T ss_pred C------H-HHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 0 0 001111111111 1 011 8899999999999 6999999988
Q ss_pred HHHHHHHHhCCCcEEEEecCCCCCCCh
Q 029421 127 FPAVLRILESNIPVLASIPAPKSGRDI 153 (193)
Q Consensus 127 ~~~ll~~l~~g~tvl~~~~~~~~tHd~ 153 (193)
+.+.+..+.+++|+|++ ||++
T Consensus 509 I~~~l~~~~~~~TvIiI------tHrl 529 (529)
T TIGR02868 509 LLEDLLAALSGKTVVVI------THHL 529 (529)
T ss_pred HHHHHHHhcCCCEEEEE------ecCC
Confidence 88888877678999999 8873
No 297
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.93 E-value=1.1e-25 Score=198.10 Aligned_cols=165 Identities=15% Similarity=0.166 Sum_probs=115.8
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeec---CCcccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTL---DDRRAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~---~~~~~~~~~~~~~~~~ 77 (193)
|+|++|++++|+||||||||||+++|+|+++|++|+|.+++ . ..+||++|++ .+..++.+++.+....
T Consensus 343 l~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~--------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~ 413 (552)
T TIGR03719 343 FKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-T--------VKLAYVDQSRDALDPNKTVWEEISGGLDI 413 (552)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-c--------eEEEEEeCCccccCCCCcHHHHHHhhccc
Confidence 57899999999999999999999999999999999998843 1 2589999974 2334566654432211
Q ss_pred CCCCCcccceeeehhhhhhhcccc---------cc------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh
Q 029421 78 SYRWPTVGRYKVDVASFEAIALPE---------LQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE 135 (193)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~l~~---------~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~ 135 (193)
. ..... .....+.++.+++.. ++ ++.+|+++||||| ++||+.++..+.++++.+.
T Consensus 414 ~-~~~~~--~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~ 490 (552)
T TIGR03719 414 I-QLGKR--EVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA 490 (552)
T ss_pred c-ccCcc--hHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC
Confidence 0 00100 111224556666532 11 8899999999999 6999999999999888774
Q ss_pred CCCcEEEEecCCCCCCChhHHHHHhcCC----C-cEEEEeCCCChhHHHHHHHHHH
Q 029421 136 SNIPVLASIPAPKSGRDIPAVARLRNHP----G-ATIFTLSPGNRDSLKDNIYYQL 186 (193)
Q Consensus 136 ~g~tvl~~~~~~~~tHd~~~~~~~~d~~----~-~~~~~~~~~~~~~l~~~~~~~~ 186 (193)
.|||++ |||++++.++||++ + +.+.. ..++.++..+......
T Consensus 491 --~~viiv------sHd~~~~~~~~d~i~~l~~~~~~~~-~~g~~~~~~~~~~~~~ 537 (552)
T TIGR03719 491 --GCAVVI------SHDRWFLDRIATHILAFEGDSHVEW-FEGNYSEYEEDKKRRL 537 (552)
T ss_pred --CeEEEE------eCCHHHHHHhCCEEEEEECCCeEEE-eCCCHHHHHHHHHHHH
Confidence 389999 99999999999983 2 23322 2345555554444333
No 298
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.93 E-value=9.1e-26 Score=183.16 Aligned_cols=145 Identities=20% Similarity=0.244 Sum_probs=98.3
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecC-CcccccccccCCCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD-DRRAPLASINASSPESY 79 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~-~~~~~~~~~~~~~~~~~ 79 (193)
|+|.+|++++|+||||||||||+++|+|+++|++|+|.++| .++|++|++. ...+..+++.+......
T Consensus 58 ~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g-----------~i~yv~q~~~l~~~tv~enl~~~~~~~~ 126 (282)
T cd03291 58 LKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG-----------RISFSSQFSWIMPGTIKENIIFGVSYDE 126 (282)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-----------EEEEEeCcccccccCHHHHhhcccccCH
Confidence 57899999999999999999999999999999999999987 3889998762 11244455433211000
Q ss_pred -CCCcccceeeehhhhhhhc----------ccccc------------cCCCCCEEEEecC-CCccccccchHHH-HHHHH
Q 029421 80 -RWPTVGRYKVDVASFEAIA----------LPELQ------------VGADTDLFVIDEV-GKMELFSSSFFPA-VLRIL 134 (193)
Q Consensus 80 -~~~~~~~~~~~~~~l~~~~----------l~~~~------------l~~~p~llllDEp-~~LD~~~~~~~~~-ll~~l 134 (193)
............+.+..+. ...++ ++.+|+++||||| ++||+.++..+.+ +++.+
T Consensus 127 ~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~ 206 (282)
T cd03291 127 YRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKL 206 (282)
T ss_pred HHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHh
Confidence 0000000000011111110 01222 7899999999999 6999999887765 44566
Q ss_pred hCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 135 ESNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 135 ~~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
+++.|||++ ||++..+ ..||++
T Consensus 207 ~~~~tIiii------sH~~~~~-~~~d~i 228 (282)
T cd03291 207 MANKTRILV------TSKMEHL-KKADKI 228 (282)
T ss_pred hCCCEEEEE------eCChHHH-HhCCEE
Confidence 568999999 9999887 478883
No 299
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=3.2e-26 Score=196.09 Aligned_cols=149 Identities=17% Similarity=0.232 Sum_probs=112.0
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc--cCCceeeEEEeecCC-cccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR--QGGQRVGFEVVTLDD-RRAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~--~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~ 77 (193)
|++++|+.++|+|+||||||||+++|+|+.+|++|+|.+||.+..+.. ..+++++|++|+|.- ..+..+|+.+....
T Consensus 342 ~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~ 421 (559)
T COG4988 342 LTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPD 421 (559)
T ss_pred eEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCc
Confidence 688999999999999999999999999999999999999999875443 346889999999842 23555665543321
Q ss_pred CCCCCcccceeeehhhhhhhc----------ccc--------c------------ccCCCCCEEEEecC-CCccccccch
Q 029421 78 SYRWPTVGRYKVDVASFEAIA----------LPE--------L------------QVGADTDLFVIDEV-GKMELFSSSF 126 (193)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~----------l~~--------~------------~l~~~p~llllDEp-~~LD~~~~~~ 126 (193)
. . .+...+++++.+ ++. + .+..+++++|+||| ++||.++.+.
T Consensus 422 ~------s-~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~ 494 (559)
T COG4988 422 A------S-DEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQI 494 (559)
T ss_pred C------C-HHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHH
Confidence 0 0 011111111111 110 1 17789999999999 5999999999
Q ss_pred HHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 127 FPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 127 ~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
+.+.+..+.+++|++++ ||++..+. -+|++
T Consensus 495 i~~~l~~l~~~ktvl~i------tHrl~~~~-~~D~I 524 (559)
T COG4988 495 ILQALQELAKQKTVLVI------THRLEDAA-DADRI 524 (559)
T ss_pred HHHHHHHHHhCCeEEEE------EcChHHHh-cCCEE
Confidence 99999999889999999 99987665 46773
No 300
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.93 E-value=2.7e-26 Score=200.94 Aligned_cols=156 Identities=17% Similarity=0.188 Sum_probs=111.0
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecC-CcccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLD-DRRAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~-~~~~~~~~~~~~~~~ 77 (193)
|+|++|+.++|+||||||||||+++|+|+++|++|+|.++|.++.+. ...++.++|++|++. ...+..+|+.+....
T Consensus 343 l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~ 422 (529)
T TIGR02857 343 FTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPD 422 (529)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHHHhccCCC
Confidence 57899999999999999999999999999999999999999987533 344678999999973 224566665543221
Q ss_pred CCCC--Ccccceeeehhhhhhh--ccc--------ccc------------cCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421 78 SYRW--PTVGRYKVDVASFEAI--ALP--------ELQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVLR 132 (193)
Q Consensus 78 ~~~~--~~~~~~~~~~~~l~~~--~l~--------~~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~ 132 (193)
.... ...-+.....+.++.+ |++ .++ ++.+|++++|||| +++|+.+.+.+.+.+.
T Consensus 423 ~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~ 502 (529)
T TIGR02857 423 ASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALR 502 (529)
T ss_pred CCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHH
Confidence 1000 0000000001111111 010 111 8899999999999 6999999998888888
Q ss_pred HHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 133 ILESNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 133 ~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+.+++|+|++ ||++..+ +.||++
T Consensus 503 ~~~~~~t~i~i------tH~~~~~-~~~d~i 526 (529)
T TIGR02857 503 ALAQGRTVLLV------THRLALA-ERADRI 526 (529)
T ss_pred HhcCCCEEEEE------ecCHHHH-HhCCEE
Confidence 87678999999 9998776 468873
No 301
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.93 E-value=3e-26 Score=202.50 Aligned_cols=164 Identities=15% Similarity=0.197 Sum_probs=118.0
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCC-cccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDD-RRAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~ 77 (193)
|++++|++++|+||||||||||+++|+|+++|++|+|.++|.++.+. ...++.++|++|++.- ..+..+|+.+....
T Consensus 361 ~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~ 440 (574)
T PRK11160 361 LQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPN 440 (574)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCc
Confidence 57899999999999999999999999999999999999999987543 2346789999998732 23555665543221
Q ss_pred CCCCCcccceeeehhhhhhhccc------------------ccc------------cCCCCCEEEEecC-CCccccccch
Q 029421 78 SYRWPTVGRYKVDVASFEAIALP------------------ELQ------------VGADTDLFVIDEV-GKMELFSSSF 126 (193)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~l~------------------~~~------------l~~~p~llllDEp-~~LD~~~~~~ 126 (193)
. . .+...+.++..++. .++ ++.+|+++||||| ++||+.+++.
T Consensus 441 ~---~----~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~ 513 (574)
T PRK11160 441 A---S----DEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQ 513 (574)
T ss_pred c---C----HHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 0 0 00111112211111 111 8899999999999 6999999999
Q ss_pred HHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHHH
Q 029421 127 FPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLKD 180 (193)
Q Consensus 127 ~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~~ 180 (193)
+.+.+..+.+++|+|++ ||+...+. .||++ ++.+. ..++.+++.+
T Consensus 514 i~~~l~~~~~~~tviii------tHr~~~~~-~~d~i~~l~~G~i~--~~g~~~~l~~ 562 (574)
T PRK11160 514 ILELLAEHAQNKTVLMI------THRLTGLE-QFDRICVMDNGQII--EQGTHQELLA 562 (574)
T ss_pred HHHHHHHHcCCCEEEEE------ecChhHHH-hCCEEEEEeCCeEE--EeCCHHHHHh
Confidence 99888887778999999 99988775 48883 33333 3455555543
No 302
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=5.8e-26 Score=198.97 Aligned_cols=140 Identities=16% Similarity=0.209 Sum_probs=105.0
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecC----CcccccccccCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD----DRRAPLASINASSP 76 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~----~~~~~~~~~~~~~~ 76 (193)
|+|++|++++|+||||||||||+|+|+|+++|++|+|.++|. .++||++|++. +..++.+++....
T Consensus 340 ~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~---------~~i~~~~q~~~~~~~~~~t~~~~~~~~~- 409 (530)
T PRK15064 340 LLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN---------ANIGYYAQDHAYDFENDLTLFDWMSQWR- 409 (530)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc---------eEEEEEcccccccCCCCCcHHHHHHHhc-
Confidence 578999999999999999999999999999999999998762 46999999752 1233444322100
Q ss_pred CCCCCCcccceeeehhhhhhhccc-cc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHHH
Q 029421 77 ESYRWPTVGRYKVDVASFEAIALP-EL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRIL 134 (193)
Q Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~l~-~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l 134 (193)
. .. .......+.++.+++. .. + ++.+|++|||||| ++||+.++..+.++++.+
T Consensus 410 ---~-~~-~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 484 (530)
T PRK15064 410 ---Q-EG-DDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY 484 (530)
T ss_pred ---c-CC-ccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC
Confidence 0 00 0111233455555552 11 1 7899999999999 699999998888888766
Q ss_pred hCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 135 ESNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 135 ~~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
+.|||++ |||.+++..+||++
T Consensus 485 --~~tvi~v------sHd~~~~~~~~d~i 505 (530)
T PRK15064 485 --EGTLIFV------SHDREFVSSLATRI 505 (530)
T ss_pred --CCEEEEE------eCCHHHHHHhCCEE
Confidence 4599999 99999999999984
No 303
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.93 E-value=3.3e-26 Score=201.99 Aligned_cols=150 Identities=14% Similarity=0.152 Sum_probs=110.3
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCC-cccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDD-RRAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~ 77 (193)
|++++|+.++|+|+||||||||+++|+|+++|++|+|.++|.++... ...++.++|+||++.- ..+..+|+.+....
T Consensus 353 l~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~ 432 (571)
T TIGR02203 353 LVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTE 432 (571)
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCC
Confidence 57899999999999999999999999999999999999999987533 3446789999999832 23555665443210
Q ss_pred CCCCCcccceeeehhhhhhhcc-----------c--------ccc------------cCCCCCEEEEecC-CCccccccc
Q 029421 78 SYRWPTVGRYKVDVASFEAIAL-----------P--------ELQ------------VGADTDLFVIDEV-GKMELFSSS 125 (193)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~l-----------~--------~~~------------l~~~p~llllDEp-~~LD~~~~~ 125 (193)
.. . .....+.++.+++ + .++ ++.+|++++|||| ++||+.+.+
T Consensus 433 ~~--~----~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~ 506 (571)
T TIGR02203 433 QA--D----RAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESER 506 (571)
T ss_pred CC--C----HHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHH
Confidence 00 0 0011111111111 1 011 7899999999999 699999999
Q ss_pred hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+.+.+..+.+++|+|++ ||+...+ +.||++
T Consensus 507 ~i~~~L~~~~~~~tiIii------tH~~~~~-~~~D~i 537 (571)
T TIGR02203 507 LVQAALERLMQGRTTLVI------AHRLSTI-EKADRI 537 (571)
T ss_pred HHHHHHHHHhCCCEEEEE------ehhhHHH-HhCCEE
Confidence 889888887778999999 9997654 568883
No 304
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.93 E-value=2.5e-26 Score=166.76 Aligned_cols=149 Identities=16% Similarity=0.232 Sum_probs=118.0
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccC---CCCeEEeceEchhhccCCceeeEEEeec--CCcccccccccCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKAS---NPSLKVQGFYTGEIRQGGQRVGFEVVTL--DDRRAPLASINASS 75 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~---~G~i~~~g~~~~~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~ 75 (193)
|+|.+||++.|+||||||||||+..+.|.+.++ +|+++++++++...+...+.+|+.||+. ++..++.+|+.+..
T Consensus 23 ~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphlsVg~Nl~fAl 102 (213)
T COG4136 23 FTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLSVGQNLLFAL 102 (213)
T ss_pred EEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeecccccccccccccceEEec
Confidence 589999999999999999999999999999875 7999999999877777788999999997 67778888877655
Q ss_pred CCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHH-HH
Q 029421 76 PESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVL-RI 133 (193)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll-~~ 133 (193)
.....- ..+.......+++.++.... ++..|+.++|||| +.||...+.++.+.. .+
T Consensus 103 p~~~KG--~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~ 180 (213)
T COG4136 103 PATLKG--NARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSE 180 (213)
T ss_pred Cccccc--HHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHH
Confidence 432211 11223345667777765432 7889999999999 899999997776665 45
Q ss_pred HhC-CCcEEEEecCCCCCCChhHHH
Q 029421 134 LES-NIPVLASIPAPKSGRDIPAVA 157 (193)
Q Consensus 134 l~~-g~tvl~~~~~~~~tHd~~~~~ 157 (193)
+.+ |...++| |||..++.
T Consensus 181 ~r~agiPtv~V------THD~~Dvp 199 (213)
T COG4136 181 VRAAGIPTVQV------THDLQDVP 199 (213)
T ss_pred HHhcCCCeEEE------ecccccCC
Confidence 666 9999999 99977654
No 305
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.93 E-value=5.2e-26 Score=200.77 Aligned_cols=155 Identities=13% Similarity=0.174 Sum_probs=109.7
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCC-cccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDD-RRAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~ 77 (193)
|++++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ...++.++|++|++.- ..+..+|+.+....
T Consensus 336 ~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~ 415 (569)
T PRK10789 336 FTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPD 415 (569)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCCC
Confidence 57899999999999999999999999999999999999999987432 2346779999998732 23555665443211
Q ss_pred CCCCCcccc-ee--eehhhhhhh--ccc--------ccc------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421 78 SYRWPTVGR-YK--VDVASFEAI--ALP--------ELQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVL 131 (193)
Q Consensus 78 ~~~~~~~~~-~~--~~~~~l~~~--~l~--------~~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll 131 (193)
.. ...... .+ ...+....+ |+. .++ ++.+|+++||||| ++||+.++..+.+.+
T Consensus 416 ~~-~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l 494 (569)
T PRK10789 416 AT-QQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNL 494 (569)
T ss_pred CC-HHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHH
Confidence 00 000000 00 000011111 111 111 8899999999999 699999999898888
Q ss_pred HHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 132 RILESNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 132 ~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
+.+.+|+|+|++ ||+.+.+. .||++
T Consensus 495 ~~~~~~~tii~i------tH~~~~~~-~~d~i 519 (569)
T PRK10789 495 RQWGEGRTVIIS------AHRLSALT-EASEI 519 (569)
T ss_pred HHHhCCCEEEEE------ecchhHHH-cCCEE
Confidence 887679999999 99987664 58883
No 306
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.93 E-value=6.3e-26 Score=169.63 Aligned_cols=157 Identities=11% Similarity=0.162 Sum_probs=119.4
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEch--hhccCCceeeEEEeecCCccccccc----ccCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTG--EIRQGGQRVGFEVVTLDDRRAPLAS----INAS 74 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~--~~~~~~~~ig~~~q~~~~~~~~~~~----~~~~ 74 (193)
|++++|+.++++|.||||||||.|+|+|+++|++|+|.+||.... ......++|-++||+++...++.-+ +..+
T Consensus 34 FtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~P 113 (267)
T COG4167 34 FTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFP 113 (267)
T ss_pred EEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccccChhhhhhhHhcch
Confidence 678999999999999999999999999999999999999998863 2333457788999998543333322 2222
Q ss_pred CCCCCCCCcccceeeehhhhhhhcccc-c--------------------ccCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421 75 SPESYRWPTVGRYKVDVASFEAIALPE-L--------------------QVGADTDLFVIDEV-GKMELFSSSFFPAVLR 132 (193)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~l~~~~l~~-~--------------------~l~~~p~llllDEp-~~LD~~~~~~~~~ll~ 132 (193)
......+....+.+++.+.+..+|+-. . +|..+|+++|.||. ++||...+.++.+++-
T Consensus 114 L~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~L 193 (267)
T COG4167 114 LRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLML 193 (267)
T ss_pred hhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHH
Confidence 222222333333344555666666531 1 17889999999999 8999999988888888
Q ss_pred HHhC--CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 133 ILES--NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 133 ~l~~--g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+.+ |.+.|.| ++++..+..++|.+
T Consensus 194 eLQek~GiSyiYV------~QhlG~iKHi~D~v 220 (267)
T COG4167 194 ELQEKQGISYIYV------TQHIGMIKHISDQV 220 (267)
T ss_pred HHHHHhCceEEEE------echhhHhhhhcccE
Confidence 8765 9999999 99999999999984
No 307
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.93 E-value=5.5e-26 Score=201.17 Aligned_cols=170 Identities=15% Similarity=0.178 Sum_probs=116.7
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecC-CcccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLD-DRRAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~-~~~~~~~~~~~~~~~ 77 (193)
|++++|++++|+||||||||||+++|+|+++|++|+|.++|.+.... ...++.++|++|++. ...+..+|+.+....
T Consensus 356 ~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~ 435 (585)
T TIGR01192 356 FEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREG 435 (585)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCC
Confidence 57899999999999999999999999999999999999999987432 234578999999873 223555665443211
Q ss_pred CCCCCccc---ceeeehhhhhhh--ccc--------ccc------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421 78 SYRWPTVG---RYKVDVASFEAI--ALP--------ELQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVL 131 (193)
Q Consensus 78 ~~~~~~~~---~~~~~~~~l~~~--~l~--------~~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll 131 (193)
. ...... ......+.+..+ ++. .++ ++.+|+++||||| ++||+.++..+.+.+
T Consensus 436 ~-~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l 514 (585)
T TIGR01192 436 A-TDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAI 514 (585)
T ss_pred C-CHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHH
Confidence 0 000000 000000111111 111 111 8899999999999 699999999999988
Q ss_pred HHHhCCCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHHH
Q 029421 132 RILESNIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLKD 180 (193)
Q Consensus 132 ~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~~ 180 (193)
..+.+++|+|++ ||+.+.+. .||++ ++.+. ..++.+++.+
T Consensus 515 ~~~~~~~tvI~i------sH~~~~~~-~~d~i~~l~~G~i~--~~g~~~~l~~ 558 (585)
T TIGR01192 515 DALRKNRTTFII------AHRLSTVR-NADLVLFLDQGRLI--EKGSFQELIQ 558 (585)
T ss_pred HHHhCCCEEEEE------EcChHHHH-cCCEEEEEECCEEE--EECCHHHHHH
Confidence 887679999999 99998774 58883 23333 3345555543
No 308
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.93 E-value=1e-25 Score=176.12 Aligned_cols=144 Identities=11% Similarity=0.020 Sum_probs=95.3
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeE-EeceEchhhccCCceeeEEEeecCCcccccccccCCCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLK-VQGFYTGEIRQGGQRVGFEVVTLDDRRAPLASINASSPESY 79 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~-~~g~~~~~~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~ 79 (193)
|+|++|++++|+||||||||||+++|+|+++|++|+|. ++|.... +++.+. ..+..++.+++.+.....
T Consensus 8 ~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~--------~~~~~~-l~~~ltv~enl~~~~~~~- 77 (213)
T PRK15177 8 FVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALP--------LGANSF-ILPGLTGEENARMMASLY- 77 (213)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceec--------cccccc-cCCcCcHHHHHHHHHHHc-
Confidence 67999999999999999999999999999999999997 6664321 121111 122344555543321100
Q ss_pred CCCcccceeeehhhhhhhccc--------cc------------ccCCCCCEEEEecC-CCccccccchHHHHHHHHhCCC
Q 029421 80 RWPTVGRYKVDVASFEAIALP--------EL------------QVGADTDLFVIDEV-GKMELFSSSFFPAVLRILESNI 138 (193)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~l~--------~~------------~l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~g~ 138 (193)
...... ......+..++. .+ .++.+|+++|+||| +++|+.++..+..++....++.
T Consensus 78 ~~~~~~---~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~~~ 154 (213)
T PRK15177 78 GLDGDE---FSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQQK 154 (213)
T ss_pred CCCHHH---HHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhhCC
Confidence 011000 000111111111 11 17889999999999 7999999887777665433456
Q ss_pred cEEEEecCCCCCCChhHHHHHhcCC
Q 029421 139 PVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 139 tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
++|++ ||++..+..+||++
T Consensus 155 ~ii~v------sH~~~~~~~~~d~i 173 (213)
T PRK15177 155 GLIVL------THNPRLIKEHCHAF 173 (213)
T ss_pred cEEEE------ECCHHHHHHhcCee
Confidence 89999 99999999999984
No 309
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.93 E-value=1.9e-25 Score=196.77 Aligned_cols=143 Identities=13% Similarity=0.166 Sum_probs=106.6
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeec---CCcccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTL---DDRRAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~---~~~~~~~~~~~~~~~~ 77 (193)
|+|++|++++|+||||||||||+++|+|+++|++|+|.+++ . .++||++|++ .+..++.+++.+....
T Consensus 345 l~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~--------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~ 415 (556)
T PRK11819 345 FSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-T--------VKLAYVDQSRDALDPNKTVWEEISGGLDI 415 (556)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-c--------eEEEEEeCchhhcCCCCCHHHHHHhhccc
Confidence 57899999999999999999999999999999999998843 1 2589999974 2334566654432211
Q ss_pred CCCCCcccceeeehhhhhhhcccc---------cc------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh
Q 029421 78 SYRWPTVGRYKVDVASFEAIALPE---------LQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE 135 (193)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~l~~---------~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~ 135 (193)
. ..... .......++.+++.. ++ ++.+|+++||||| ++||+.++..+.+++..+.
T Consensus 416 ~-~~~~~--~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~ 492 (556)
T PRK11819 416 I-KVGNR--EIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP 492 (556)
T ss_pred c-ccccc--HHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC
Confidence 0 00000 011224555666531 11 7899999999999 6999999999999888764
Q ss_pred CCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 136 SNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 136 ~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
| |||++ |||++++..+||++
T Consensus 493 -~-tvi~v------tHd~~~~~~~~d~i 512 (556)
T PRK11819 493 -G-CAVVI------SHDRWFLDRIATHI 512 (556)
T ss_pred -C-eEEEE------ECCHHHHHHhCCEE
Confidence 4 89999 99999999999983
No 310
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=4.8e-26 Score=175.34 Aligned_cols=176 Identities=13% Similarity=0.108 Sum_probs=115.1
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhh--cccCCCCeEEeceEchhhc---cCCceeeEEEeecCCcccccccccCC-
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLES--LKASNPSLKVQGFYTGEIR---QGGQRVGFEVVTLDDRRAPLASINAS- 74 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl--~~~~~G~i~~~g~~~~~~~---~~~~~ig~~~q~~~~~~~~~~~~~~~- 74 (193)
|+|++||+.+|+||||||||||.+.|+|. +++++|+|.++|+++.... +.+..+...||.|.. .....+..+-
T Consensus 25 L~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~e-i~GV~~~~fLr 103 (251)
T COG0396 25 LTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVE-IPGVTNSDFLR 103 (251)
T ss_pred eeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCcc-CCCeeHHHHHH
Confidence 57999999999999999999999999998 4789999999999975432 334556777887732 1222211110
Q ss_pred --CCCCCCC-C-cccceeeehhhhhhhccccc----------c------------cCCCCCEEEEecC-CCccccccchH
Q 029421 75 --SPESYRW-P-TVGRYKVDVASFEAIALPEL----------Q------------VGADTDLFVIDEV-GKMELFSSSFF 127 (193)
Q Consensus 75 --~~~~~~~-~-~~~~~~~~~~~l~~~~l~~~----------~------------l~~~p~llllDEp-~~LD~~~~~~~ 127 (193)
....... . .........+.++.+++... + ++.+|++.||||| +|||..+-+.+
T Consensus 104 ~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V 183 (251)
T COG0396 104 AAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIV 183 (251)
T ss_pred HHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHH
Confidence 0000000 0 00111222334444444321 1 7889999999999 89999999999
Q ss_pred HHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHh--cCCCcEE--EEeCCCChhHHHHHHHHH
Q 029421 128 PAVLRILES-NIPVLASIPAPKSGRDIPAVARLR--NHPGATI--FTLSPGNRDSLKDNIYYQ 185 (193)
Q Consensus 128 ~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~--d~~~~~~--~~~~~~~~~~l~~~~~~~ 185 (193)
.+.+..+++ |.+++++ ||.-+.+ .+. |++++.+ .++..+.. ++.+++.+.
T Consensus 184 ~~~i~~lr~~~~~~liI------THy~rll-~~i~pD~vhvl~~GrIv~sG~~-el~~~le~~ 238 (251)
T COG0396 184 AEGINALREEGRGVLII------THYQRLL-DYIKPDKVHVLYDGRIVKSGDP-ELAEELEEK 238 (251)
T ss_pred HHHHHHHhcCCCeEEEE------ecHHHHH-hhcCCCEEEEEECCEEEecCCH-HHHHHHHHh
Confidence 999999987 9999999 8885444 444 4432221 13444555 566655544
No 311
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.93 E-value=4e-26 Score=201.00 Aligned_cols=146 Identities=18% Similarity=0.190 Sum_probs=107.2
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecC--CcccccccccCCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD--DRRAPLASINASSPES 78 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~~~ 78 (193)
|+|++|++++|+||||||||||+++|+|+++|++|+|.+++ ...+||++|++. +..++.+++.+.....
T Consensus 28 ~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~---------~~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~ 98 (556)
T PRK11819 28 LSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP---------GIKVGYLPQEPQLDPEKTVRENVEEGVAEV 98 (556)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC---------CCEEEEEecCCCCCCCCcHHHHHHHhhHHH
Confidence 67999999999999999999999999999999999999864 246999999862 3345566544321100
Q ss_pred -------------CCCCcc----------------------cceeeehhhhhhhcccc-------cc------------c
Q 029421 79 -------------YRWPTV----------------------GRYKVDVASFEAIALPE-------LQ------------V 104 (193)
Q Consensus 79 -------------~~~~~~----------------------~~~~~~~~~l~~~~l~~-------~~------------l 104 (193)
...... .......+.++.+++.. ++ +
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~la~al 178 (556)
T PRK11819 99 KAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTKLSGGERRRVALCRLL 178 (556)
T ss_pred HHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCcccCchhhcCHHHHHHHHHHHHH
Confidence 000000 00112234455555532 21 8
Q ss_pred CCCCCEEEEecC-CCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 105 GADTDLFVIDEV-GKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 105 ~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
+.+|+++||||| ++||+.++..+.++++.+. .|||++ |||.+++..+||++
T Consensus 179 ~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~--~tviii------sHd~~~~~~~~d~i 230 (556)
T PRK11819 179 LEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP--GTVVAV------THDRYFLDNVAGWI 230 (556)
T ss_pred hCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC--CeEEEE------eCCHHHHHhhcCeE
Confidence 899999999999 6999999998888888763 599999 99999999999984
No 312
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.93 E-value=4.2e-26 Score=205.50 Aligned_cols=170 Identities=15% Similarity=0.189 Sum_probs=117.9
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecC-CcccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLD-DRRAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~-~~~~~~~~~~~~~~~ 77 (193)
|+|++|+.++|+|+||||||||+++|+|+++|++|+|.++|.++.+. ...++.++|++|++. ...+..+|+.+....
T Consensus 478 l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~ 557 (694)
T TIGR01846 478 LDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPG 557 (694)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCC
Confidence 57899999999999999999999999999999999999999987533 234678999999873 223556665543211
Q ss_pred CCCCCccc---ceeeehhhhhhh--ccc--------ccc------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421 78 SYRWPTVG---RYKVDVASFEAI--ALP--------ELQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVL 131 (193)
Q Consensus 78 ~~~~~~~~---~~~~~~~~l~~~--~l~--------~~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll 131 (193)
. ...... +.....+.++.+ |+. .++ ++.+|+++||||| ++||+.++..+.+.+
T Consensus 558 ~-~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l 636 (694)
T TIGR01846 558 A-PFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNM 636 (694)
T ss_pred C-CHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHH
Confidence 0 000000 000001111111 111 111 7899999999999 699999999999999
Q ss_pred HHHhCCCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHHH
Q 029421 132 RILESNIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLKD 180 (193)
Q Consensus 132 ~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~~ 180 (193)
+.+..++|+|++ ||+++.+. .||++ +|.+. ..++.+++.+
T Consensus 637 ~~~~~~~t~i~i------tH~~~~~~-~~d~ii~l~~G~i~--~~g~~~~l~~ 680 (694)
T TIGR01846 637 REICRGRTVIII------AHRLSTVR-ACDRIIVLEKGQIA--ESGRHEELLA 680 (694)
T ss_pred HHHhCCCEEEEE------eCChHHHH-hCCEEEEEeCCEEE--EeCCHHHHHH
Confidence 888678999999 99988775 58983 33333 3345555543
No 313
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.93 E-value=2.4e-25 Score=195.99 Aligned_cols=146 Identities=18% Similarity=0.198 Sum_probs=105.6
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecC--CcccccccccCCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD--DRRAPLASINASSPES 78 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~~~ 78 (193)
|+|++|++++|+||||||||||+++|+|+++|++|+|.+++ ...+||++|++. +..++.+++.+.....
T Consensus 26 ~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~---------~~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~ 96 (552)
T TIGR03719 26 LSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP---------GIKVGYLPQEPQLDPTKTVRENVEEGVAEI 96 (552)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC---------CCEEEEEeccCCCCCCCcHHHHHHHhhHHH
Confidence 67899999999999999999999999999999999998864 246999999862 3345556544321100
Q ss_pred -------------CCCCccc----------------------ceeeehhhhhhhccc-------ccc------------c
Q 029421 79 -------------YRWPTVG----------------------RYKVDVASFEAIALP-------ELQ------------V 104 (193)
Q Consensus 79 -------------~~~~~~~----------------------~~~~~~~~l~~~~l~-------~~~------------l 104 (193)
....... ......+.++.+++. .++ +
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkqrv~la~al 176 (552)
T TIGR03719 97 KDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLL 176 (552)
T ss_pred HHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcccCchhhcCHHHHHHHHHHHHH
Confidence 0000000 001112234444442 122 7
Q ss_pred CCCCCEEEEecC-CCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 105 GADTDLFVIDEV-GKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 105 ~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
+.+|++|||||| ++||+.++..+.++++.+ +.|||++ |||.+.+..+||++
T Consensus 177 ~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~--~~tvIii------sHd~~~~~~~~d~v 228 (552)
T TIGR03719 177 LSKPDMLLLDEPTNHLDAESVAWLEQHLQEY--PGTVVAV------THDRYFLDNVAGWI 228 (552)
T ss_pred hcCCCEEEEcCCCCCCChHHHHHHHHHHHhC--CCeEEEE------eCCHHHHHhhcCeE
Confidence 899999999999 699999998888888765 3599999 99999999999983
No 314
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.93 E-value=4.7e-26 Score=167.32 Aligned_cols=157 Identities=11% Similarity=0.163 Sum_probs=121.6
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEc--h------hhccCCceeeEEEeec--CCccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYT--G------EIRQGGQRVGFEVVTL--DDRRAPLAS 70 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~--~------~~~~~~~~ig~~~q~~--~~~~~~~~~ 70 (193)
|+.++|+.++++||||+|||||+|.+.-+.-|.+|+..+.|... + .....++++|++||.. -+.+++.+|
T Consensus 23 l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~en 102 (242)
T COG4161 23 LDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQEN 102 (242)
T ss_pred ecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhhhhhhhhccCchhHHHHH
Confidence 45689999999999999999999999999999999999977542 1 2234578899999976 345566666
Q ss_pred ccCCCCCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHH
Q 029421 71 INASSPESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPA 129 (193)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ 129 (193)
+....................+.++++.+..+. ++.+|+++++||| +.|||.-..++..
T Consensus 103 lieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~ 182 (242)
T COG4161 103 LIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVS 182 (242)
T ss_pred HHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHH
Confidence 433222222233333334456677777665443 8899999999999 5999999999999
Q ss_pred HHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 130 VLRILES-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 130 ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
+++++.. |.|-+++ ||..+.+.+.+.++
T Consensus 183 iikel~~tgitqviv------thev~va~k~as~v 211 (242)
T COG4161 183 IIKELAETGITQVIV------THEVEVARKTASRV 211 (242)
T ss_pred HHHHHHhcCceEEEE------EeehhHHHhhhhhe
Confidence 9999998 9999999 99999999999883
No 315
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=3e-26 Score=194.17 Aligned_cols=164 Identities=13% Similarity=0.194 Sum_probs=122.3
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhcc--CCceeeEEEeecCCc-ccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQ--GGQRVGFEVVTLDDR-RAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~--~~~~ig~~~q~~~~~-~~~~~~~~~~~~~ 77 (193)
|++++||.++|+|++|||||||+.+|+|.++|++|+|.++|.++...++ .++.+++++|...-+ -+..+|+.+..+.
T Consensus 359 l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~ 438 (573)
T COG4987 359 LTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPD 438 (573)
T ss_pred eeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCC
Confidence 6789999999999999999999999999999999999999998865544 466788999876322 2444555443321
Q ss_pred CCCCCcccceeeehhhhhhhcccccc-------------------------------cCCCCCEEEEecCC-Cccccccc
Q 029421 78 SYRWPTVGRYKVDVASFEAIALPELQ-------------------------------VGADTDLFVIDEVG-KMELFSSS 125 (193)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~l~~~~-------------------------------l~~~p~llllDEp~-~LD~~~~~ 125 (193)
. ..+...+.+++++++++. ++.|++++|||||+ |||+.+..
T Consensus 439 ------A-sDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~ 511 (573)
T COG4987 439 ------A-SDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITER 511 (573)
T ss_pred ------C-CHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHH
Confidence 1 112223445555544321 77899999999995 99999999
Q ss_pred hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHHH
Q 029421 126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLKD 180 (193)
Q Consensus 126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~~ 180 (193)
++.+++..-.+|+|+|++ ||++..++ .||++ +|+ .+..++.+++.+
T Consensus 512 ~vL~ll~~~~~~kTll~v------THrL~~le-~~drIivl~~Gk--iie~G~~~~Ll~ 561 (573)
T COG4987 512 QVLALLFEHAEGKTLLMV------THRLRGLE-RMDRIIVLDNGK--IIEEGTHAELLA 561 (573)
T ss_pred HHHHHHHHHhcCCeEEEE------ecccccHh-hcCEEEEEECCe--eeecCCHHhhhc
Confidence 999999887779999999 99998876 57884 233 344456666655
No 316
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.92 E-value=6.8e-26 Score=204.56 Aligned_cols=171 Identities=14% Similarity=0.189 Sum_probs=116.7
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCC-cccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDD-RRAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~ 77 (193)
|+|++|+.++|+||||||||||+++|+|+++|++|+|.++|.++.+. ...++.+||++|++.- ..+..+|+.+....
T Consensus 495 l~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~ 574 (708)
T TIGR01193 495 LTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKE 574 (708)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCC
Confidence 57899999999999999999999999999999999999999997543 3446789999999732 23566676553110
Q ss_pred CCCCCccc---ceeeehhhhhhh--ccc--------ccc------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421 78 SYRWPTVG---RYKVDVASFEAI--ALP--------ELQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVL 131 (193)
Q Consensus 78 ~~~~~~~~---~~~~~~~~l~~~--~l~--------~~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll 131 (193)
........ +.....+..+.+ |+. .++ ++.+|+++||||| ++||+.+.+.+.+.+
T Consensus 575 ~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L 654 (708)
T TIGR01193 575 NVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNL 654 (708)
T ss_pred CCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHH
Confidence 00000000 000001111111 111 111 7899999999999 699999988888877
Q ss_pred HHHhCCCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHHHH
Q 029421 132 RILESNIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLKDN 181 (193)
Q Consensus 132 ~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~~~ 181 (193)
+.+ +|+|+|++ ||+++.+ +.||++ +|.++ ..++.+++.++
T Consensus 655 ~~~-~~~T~Iii------tHr~~~~-~~~D~i~~l~~G~i~--~~G~~~~L~~~ 698 (708)
T TIGR01193 655 LNL-QDKTIIFV------AHRLSVA-KQSDKIIVLDHGKII--EQGSHDELLDR 698 (708)
T ss_pred HHh-cCCEEEEE------ecchHHH-HcCCEEEEEECCEEE--EECCHHHHHhc
Confidence 765 47999999 9998766 568884 33333 34556666543
No 317
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.92 E-value=7e-26 Score=204.42 Aligned_cols=169 Identities=11% Similarity=0.133 Sum_probs=113.5
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCC-cccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDD-RRAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~ 77 (193)
|+|++|+.++|+||||||||||+++|+|+++|++|+|.+||.++.+. ...+++++|++|++.- ..+..+|+.+....
T Consensus 502 l~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~ 581 (711)
T TIGR00958 502 FTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTD 581 (711)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCC
Confidence 57899999999999999999999999999999999999999997543 3446789999999832 34566676554221
Q ss_pred CCCCCccc---ceeeehhhhhhh--ccc--------ccc------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421 78 SYRWPTVG---RYKVDVASFEAI--ALP--------ELQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVL 131 (193)
Q Consensus 78 ~~~~~~~~---~~~~~~~~l~~~--~l~--------~~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll 131 (193)
.. ..... +.....+.++.+ |+. .++ ++.+|+++||||| ++||+.+...+.+
T Consensus 582 ~~-~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-- 658 (711)
T TIGR00958 582 TP-DEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-- 658 (711)
T ss_pred CC-HHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH--
Confidence 10 00000 000000111111 111 111 7899999999999 6999988777766
Q ss_pred HHHhCCCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHHHH
Q 029421 132 RILESNIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLKDN 181 (193)
Q Consensus 132 ~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~~~ 181 (193)
....+++|+|++ ||+++.+. .||++ +|.+ +..++.+++.++
T Consensus 659 ~~~~~~~TvIiI------tHrl~~i~-~aD~IivL~~G~i--ve~Gt~~eL~~~ 703 (711)
T TIGR00958 659 SRSRASRTVLLI------AHRLSTVE-RADQILVLKKGSV--VEMGTHKQLMED 703 (711)
T ss_pred hhccCCCeEEEE------eccHHHHH-hCCEEEEEECCEE--EEeeCHHHHHhC
Confidence 222248999999 99987764 58883 3333 334566666543
No 318
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.92 E-value=5.5e-26 Score=173.53 Aligned_cols=163 Identities=12% Similarity=0.162 Sum_probs=117.3
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc--cCCceeeEEEeec----CCcccccccccCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR--QGGQRVGFEVVTL----DDRRAPLASINAS 74 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~--~~~~~ig~~~q~~----~~~~~~~~~~~~~ 74 (193)
++|.+|+++.++|.||||||||++.|+|-++|++|+|.++|.++...+ .....++-+||+| ++.++..+|+.+.
T Consensus 27 L~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~lTieENl~la 106 (263)
T COG1101 27 LEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALA 106 (263)
T ss_pred eeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccccHHHHHHHH
Confidence 578999999999999999999999999999999999999999985433 2335577789998 4556777775543
Q ss_pred CCC--CCCCCcc---cceeeehhhhhhhc--cccc--------c------------cCCCCCEEEEecC-CCccccccch
Q 029421 75 SPE--SYRWPTV---GRYKVDVASFEAIA--LPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSF 126 (193)
Q Consensus 75 ~~~--~~~~~~~---~~~~~~~~~l~~~~--l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~ 126 (193)
... ...+... .......+.+..++ ++.. + .+..|++++|||- ++|||....+
T Consensus 107 ~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~ 186 (263)
T COG1101 107 ESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEF 186 (263)
T ss_pred HhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHH
Confidence 221 1111110 00011111222222 1111 1 5689999999999 5999999999
Q ss_pred HHHHHHHHh-C-CCcEEEEecCCCCCCChhHHHHHhcC----CCcEEEE
Q 029421 127 FPAVLRILE-S-NIPVLASIPAPKSGRDIPAVARLRNH----PGATIFT 169 (193)
Q Consensus 127 ~~~ll~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~----~~~~~~~ 169 (193)
++++-..+. + +.|.+|| ||+++.+..|.+| ..|.++.
T Consensus 187 vm~lT~kiV~~~klTtlMV------THnm~~Al~yG~RlImLh~G~Ivl 229 (263)
T COG1101 187 VMELTAKIVEEHKLTTLMV------THNMEDALDYGNRLIMLHSGKIVL 229 (263)
T ss_pred HHHHHHHHHHhcCCceEEE------eccHHHHHhhCCeEEEEeCCeEEE
Confidence 999988764 4 8999999 9999999999999 3566653
No 319
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.92 E-value=6.8e-26 Score=200.20 Aligned_cols=155 Identities=15% Similarity=0.206 Sum_probs=110.2
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCC-cccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDD-RRAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~ 77 (193)
|++++||.++|+||||||||||+++|+|+++|++|+|.++|.++.+. ...++.++|+||++.- ..+..+|+.+..+.
T Consensus 361 l~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~ 440 (576)
T TIGR02204 361 LTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPD 440 (576)
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCC
Confidence 57899999999999999999999999999999999999999987532 2345679999999832 23556665543221
Q ss_pred CCCCCcccc---eeeehhhhhhh--ccc--------ccc------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421 78 SYRWPTVGR---YKVDVASFEAI--ALP--------ELQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVL 131 (193)
Q Consensus 78 ~~~~~~~~~---~~~~~~~l~~~--~l~--------~~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll 131 (193)
.. ...... .....+.++.+ |+. .++ ++.+|+++|+||| ++||+.+++.+.+.+
T Consensus 441 ~~-~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l 519 (576)
T TIGR02204 441 AT-DEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQAL 519 (576)
T ss_pred CC-HHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHH
Confidence 10 000000 00001111111 111 111 7789999999999 699999998888888
Q ss_pred HHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 132 RILESNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 132 ~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
+.+.+++|+|++ ||+.+.+ ..+|++
T Consensus 520 ~~~~~~~t~Iii------tH~~~~~-~~~d~v 544 (576)
T TIGR02204 520 ETLMKGRTTLII------AHRLATV-LKADRI 544 (576)
T ss_pred HHHhCCCEEEEE------ecchHHH-HhCCEE
Confidence 887668999999 9998665 568883
No 320
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.92 E-value=2.9e-25 Score=168.47 Aligned_cols=138 Identities=14% Similarity=0.176 Sum_probs=92.5
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecCCcccccccccCCCCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPLASINASSPESYR 80 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~ 80 (193)
|++++|++++|+||||||||||+|++++ ++|++.++|.... ..+..++|++|. ..+....+... ...
T Consensus 16 l~i~~G~~~~l~G~nG~GKSTLl~~il~----~~G~v~~~~~~~~---~~~~~~~~~~q~-----~~l~~~~L~~~-~~~ 82 (176)
T cd03238 16 VSIPLNVLVVVTGVSGSGKSTLVNEGLY----ASGKARLISFLPK---FSRNKLIFIDQL-----QFLIDVGLGYL-TLG 82 (176)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhh----cCCcEEECCcccc---cccccEEEEhHH-----HHHHHcCCCcc-ccC
Confidence 6899999999999999999999999863 6899998876321 112347787761 11111111100 000
Q ss_pred CCcccceeeehhhhhhhcccccccCCC--CCEEEEecC-CCccccccchHHHHHHHHhC-CCcEEEEecCCCCCCChhHH
Q 029421 81 WPTVGRYKVDVASFEAIALPELQVGAD--TDLFVIDEV-GKMELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIPAV 156 (193)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~l~~~~l~~~--p~llllDEp-~~LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~ 156 (193)
. ... ....-...++.+. ..++.+ |+++|+||| ++||+.++..+.++++.+++ |.|||++ ||+.+++
T Consensus 83 ~-~~~--~LSgGq~qrl~la-ral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIiv------SH~~~~~ 152 (176)
T cd03238 83 Q-KLS--TLSGGELQRVKLA-SELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILI------EHNLDVL 152 (176)
T ss_pred C-CcC--cCCHHHHHHHHHH-HHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEE------eCCHHHH
Confidence 0 000 0000111222222 126788 999999999 69999999999999988875 9999999 9999876
Q ss_pred HHHhcC
Q 029421 157 ARLRNH 162 (193)
Q Consensus 157 ~~~~d~ 162 (193)
+.||+
T Consensus 153 -~~~d~ 157 (176)
T cd03238 153 -SSADW 157 (176)
T ss_pred -HhCCE
Confidence 57887
No 321
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.92 E-value=1e-25 Score=197.99 Aligned_cols=155 Identities=15% Similarity=0.195 Sum_probs=109.8
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCC-cccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDD-RRAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~ 77 (193)
|++++|+.++|+||||||||||+++|+|+++|++|+|.++|.++... ...++.++|++|++.- ..+..+|+.+....
T Consensus 339 ~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~ 418 (544)
T TIGR01842 339 FRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGEN 418 (544)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccccccHHHHHhccCCC
Confidence 57899999999999999999999999999999999999999987432 2346789999998732 23555565422110
Q ss_pred CCCCCccc---ceeeehhhhhhh--cccc--------cc------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421 78 SYRWPTVG---RYKVDVASFEAI--ALPE--------LQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVL 131 (193)
Q Consensus 78 ~~~~~~~~---~~~~~~~~l~~~--~l~~--------~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll 131 (193)
. ...... +.....+.++.+ |+.. ++ ++.+|+++||||| ++||+.++..+.+.+
T Consensus 419 ~-~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l 497 (544)
T TIGR01842 419 A-DPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAI 497 (544)
T ss_pred C-CHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHH
Confidence 0 000000 000011222222 1111 11 7899999999999 699999999999988
Q ss_pred HHHh-CCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 132 RILE-SNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 132 ~~l~-~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
..+. +|+|+|++ ||+...+ +.||++
T Consensus 498 ~~~~~~~~tvi~i------th~~~~~-~~~d~i 523 (544)
T TIGR01842 498 KALKARGITVVVI------THRPSLL-GCVDKI 523 (544)
T ss_pred HHHhhCCCEEEEE------eCCHHHH-HhCCEE
Confidence 8876 48999999 9998765 568883
No 322
>PRK13409 putative ATPase RIL; Provisional
Probab=99.92 E-value=9.9e-26 Score=199.06 Aligned_cols=146 Identities=18% Similarity=0.198 Sum_probs=106.0
Q ss_pred cccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeE-----------EeceEchhh----ccCCceeeEEEeecCCc--
Q 029421 2 AAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLK-----------VQGFYTGEI----RQGGQRVGFEVVTLDDR-- 64 (193)
Q Consensus 2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~-----------~~g~~~~~~----~~~~~~ig~~~q~~~~~-- 64 (193)
++++|++++|+||||||||||+|+|+|+++|++|+|. ++|.++... .....++++.+|.....
T Consensus 95 ~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~q~~~~~p~ 174 (590)
T PRK13409 95 IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHKPQYVDLIPK 174 (590)
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeecccchhhhhh
Confidence 4689999999999999999999999999999999997 888876322 11223456666643211
Q ss_pred c---cccccccCCCCCCCCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCcc
Q 029421 65 R---APLASINASSPESYRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKME 120 (193)
Q Consensus 65 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD 120 (193)
. ++.+++.. ........+.++.+++... + ++.+|+++||||| ++||
T Consensus 175 ~~~~tv~e~l~~----------~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD 244 (590)
T PRK13409 175 VFKGKVRELLKK----------VDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLD 244 (590)
T ss_pred hhcchHHHHHHh----------hhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCC
Confidence 1 22222110 0011123345555555322 1 7899999999999 6999
Q ss_pred ccccchHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 121 LFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 121 ~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
+..+..+.++++.+++|.|||++ |||++.+..+||++
T Consensus 245 ~~~~~~l~~~i~~l~~g~tvIiv------sHd~~~l~~~~D~v 281 (590)
T PRK13409 245 IRQRLNVARLIRELAEGKYVLVV------EHDLAVLDYLADNV 281 (590)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEE------eCCHHHHHHhCCEE
Confidence 99999999999987558999999 99999999999984
No 323
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.92 E-value=1.8e-25 Score=197.36 Aligned_cols=172 Identities=14% Similarity=0.223 Sum_probs=123.9
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCCc-ccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDDR-RAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~~-~~~~~~~~~~~~~ 77 (193)
|++++|+.+||+|||||||||++++|+|+++|++|+|.+||.++... ...++.++|+||++..+ .+..+|+.+..+.
T Consensus 350 ~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~ 429 (567)
T COG1132 350 FSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPD 429 (567)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCC
Confidence 57899999999999999999999999999999999999999998643 34578899999998322 4667776665432
Q ss_pred CCC--CCcccceeeehhhhhhh--cccc--------cc------------cCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421 78 SYR--WPTVGRYKVDVASFEAI--ALPE--------LQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVLR 132 (193)
Q Consensus 78 ~~~--~~~~~~~~~~~~~l~~~--~l~~--------~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~ 132 (193)
... ....-+.....+..+.+ |+.. ++ ++.+|++++|||| +++|+.+...+.+.+.
T Consensus 430 at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~ 509 (567)
T COG1132 430 ATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALK 509 (567)
T ss_pred CCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHH
Confidence 100 00000000011112222 1110 11 8899999999999 6999999998888888
Q ss_pred HHhCCCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHHHH
Q 029421 133 ILESNIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLKDN 181 (193)
Q Consensus 133 ~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~~~ 181 (193)
.+.+|+|++++ +|.+..+.. ||++ +|. .+..++.++|.++
T Consensus 510 ~l~~~rT~iiI------aHRlsti~~-aD~IiVl~~G~--i~e~G~h~eLl~~ 553 (567)
T COG1132 510 KLLKGRTTLII------AHRLSTIKN-ADRIIVLDNGR--IVERGTHEELLAK 553 (567)
T ss_pred HHhcCCEEEEE------eccHhHHHh-CCEEEEEECCE--EEEecCHHHHHHc
Confidence 77778899999 999988876 8984 233 4556778888775
No 324
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=4.3e-25 Score=187.46 Aligned_cols=163 Identities=15% Similarity=0.161 Sum_probs=118.9
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCC-cccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDD-RRAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~ 77 (193)
|+|++||-+||+|+|||||||++|+|.+... .+|+|++||.+++.. ...|+-|||+||+... ..+.+.|+.+....
T Consensus 373 f~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~s 451 (591)
T KOG0057|consen 373 FTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPS 451 (591)
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCC
Confidence 6899999999999999999999999999999 899999999998654 3457889999998632 23566666554432
Q ss_pred CCCCCcccceeeehhhhhhhccccc-------------------------------ccCCCCCEEEEecC-CCccccccc
Q 029421 78 SYRWPTVGRYKVDVASFEAIALPEL-------------------------------QVGADTDLFVIDEV-GKMELFSSS 125 (193)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~l~~~-------------------------------~l~~~p~llllDEp-~~LD~~~~~ 125 (193)
.. .+.+.+..++.++.+. .++.+|+++++||| +.||..+..
T Consensus 452 as-------~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~ 524 (591)
T KOG0057|consen 452 AS-------DEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETER 524 (591)
T ss_pred cC-------HHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHH
Confidence 11 1112222233222211 17899999999999 699999987
Q ss_pred hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHHH
Q 029421 126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLKD 180 (193)
Q Consensus 126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~~ 180 (193)
.+.+.+.....|+|+|++ -|++..+. -||++ ++.+.. .++.+++.+
T Consensus 525 ~i~~~i~~~~~~rTvI~I------vH~l~ll~-~~DkI~~l~nG~v~e--~gth~ell~ 574 (591)
T KOG0057|consen 525 EILDMIMDVMSGRTVIMI------VHRLDLLK-DFDKIIVLDNGTVKE--YGTHSELLA 574 (591)
T ss_pred HHHHHHHHhcCCCeEEEE------EecchhHh-cCCEEEEEECCeeEE--eccHHHHhh
Confidence 777777775569999999 88877665 47883 344333 346667776
No 325
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.92 E-value=1.3e-25 Score=199.70 Aligned_cols=156 Identities=16% Similarity=0.130 Sum_probs=116.1
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccC---CCCeEEeceEchhhccCCceeeEEEeec--CCcccccccccCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKAS---NPSLKVQGFYTGEIRQGGQRVGFEVVTL--DDRRAPLASINASS 75 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~---~G~i~~~g~~~~~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~ 75 (193)
+++++||+++|+||||||||||+++|+|..++. +|+|.++|.+... ...++.+||++|++ .+..++.+++.+..
T Consensus 46 ~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~-~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~ 124 (617)
T TIGR00955 46 GVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDA-KEMRAISAYVQQDDLFIPTLTVREHLMFQA 124 (617)
T ss_pred EEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCH-HHHhhhceeeccccccCccCcHHHHHHHHH
Confidence 468999999999999999999999999998875 7999999988642 23456799999986 34457777665432
Q ss_pred CCCC--CCCcccceeeehhhhhhhcccc--------------cc------------cCCCCCEEEEecC-CCccccccch
Q 029421 76 PESY--RWPTVGRYKVDVASFEAIALPE--------------LQ------------VGADTDLFVIDEV-GKMELFSSSF 126 (193)
Q Consensus 76 ~~~~--~~~~~~~~~~~~~~l~~~~l~~--------------~~------------l~~~p~llllDEp-~~LD~~~~~~ 126 (193)
.... ..........+.+.++.+++.+ ++ ++.+|+++++||| +|||+.++..
T Consensus 125 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~ 204 (617)
T TIGR00955 125 HLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYS 204 (617)
T ss_pred hcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHH
Confidence 1110 0011111122344555544422 22 7899999999999 6999999999
Q ss_pred HHHHHHHHhC-CCcEEEEecCCCCCCChh-HHHHHhcCC
Q 029421 127 FPAVLRILES-NIPVLASIPAPKSGRDIP-AVARLRNHP 163 (193)
Q Consensus 127 ~~~ll~~l~~-g~tvl~~~~~~~~tHd~~-~~~~~~d~~ 163 (193)
+.+.++.+++ |+|||++ +|+.. ++.+++|++
T Consensus 205 l~~~L~~l~~~g~tvi~~------~hq~~~~i~~~~D~i 237 (617)
T TIGR00955 205 VVQVLKGLAQKGKTIICT------IHQPSSELFELFDKI 237 (617)
T ss_pred HHHHHHHHHhCCCEEEEE------eCCCCHHHHHHhceE
Confidence 9999999876 9999999 99985 678899983
No 326
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.92 E-value=2.5e-25 Score=198.60 Aligned_cols=142 Identities=19% Similarity=0.263 Sum_probs=103.9
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeec---CCcccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTL---DDRRAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~---~~~~~~~~~~~~~~~~ 77 (193)
|+|.+|++++|+||||||||||+|+|+|+++|++|+|.+ |.. .++||++|+. .+..++.+++......
T Consensus 340 l~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~--------~~i~y~~q~~~~l~~~~tv~e~l~~~~~~ 410 (635)
T PRK11147 340 AQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTK--------LEVAYFDQHRAELDPEKTVMDNLAEGKQE 410 (635)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCC--------cEEEEEeCcccccCCCCCHHHHHHhhccc
Confidence 578999999999999999999999999999999999988 432 2589999864 2334556554332110
Q ss_pred CCCCCcccceeeehhhhhhhccc---------ccc------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh
Q 029421 78 SYRWPTVGRYKVDVASFEAIALP---------ELQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE 135 (193)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~l~---------~~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~ 135 (193)
. ... .......+.+..+++. .++ ++.+|++|||||| ++||+.++..+.++++.+
T Consensus 411 ~-~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~- 486 (635)
T PRK11147 411 V-MVN--GRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY- 486 (635)
T ss_pred c-ccc--chHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC-
Confidence 0 000 0011223444444442 111 7889999999999 699999988777777765
Q ss_pred CCCcEEEEecCCCCCCChhHHHHHhcC
Q 029421 136 SNIPVLASIPAPKSGRDIPAVARLRNH 162 (193)
Q Consensus 136 ~g~tvl~~~~~~~~tHd~~~~~~~~d~ 162 (193)
+.|||+| |||..++..+||+
T Consensus 487 -~~tvi~v------SHd~~~~~~~~d~ 506 (635)
T PRK11147 487 -QGTVLLV------SHDRQFVDNTVTE 506 (635)
T ss_pred -CCeEEEE------ECCHHHHHHhcCE
Confidence 4599999 9999999999998
No 327
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=2.1e-25 Score=198.98 Aligned_cols=139 Identities=14% Similarity=0.173 Sum_probs=102.5
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecCCc----ccccccccCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDR----RAPLASINASSP 76 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~~----~~~~~~~~~~~~ 76 (193)
|+|.+|++++|+||||||||||+|+|+|+++|++|+|.+++ ..++||++|+.... .++.++...
T Consensus 333 l~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------~~~igy~~Q~~~~~l~~~~~~~~~~~~--- 400 (638)
T PRK10636 333 LNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAK---------GIKLGYFAQHQLEFLRADESPLQHLAR--- 400 (638)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECC---------CEEEEEecCcchhhCCccchHHHHHHH---
Confidence 57899999999999999999999999999999999999863 13689999864111 122221100
Q ss_pred CCCCCCcccceeeehhhhhhhcccc---------cc------------cCCCCCEEEEecC-CCccccccchHHHHHHHH
Q 029421 77 ESYRWPTVGRYKVDVASFEAIALPE---------LQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRIL 134 (193)
Q Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~l~~---------~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l 134 (193)
...........+.+..+++.. ++ ++.+|++|||||| ++||+.++..+.+++..+
T Consensus 401 ----~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~ 476 (638)
T PRK10636 401 ----LAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF 476 (638)
T ss_pred ----hCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc
Confidence 000001112334555555531 11 7899999999999 699999999999988877
Q ss_pred hCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 135 ESNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 135 ~~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
+.|||+| |||..++.++||++
T Consensus 477 --~gtvi~v------SHd~~~~~~~~d~i 497 (638)
T PRK10636 477 --EGALVVV------SHDRHLLRSTTDDL 497 (638)
T ss_pred --CCeEEEE------eCCHHHHHHhCCEE
Confidence 3499999 99999999999983
No 328
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=9.6e-26 Score=168.85 Aligned_cols=144 Identities=18% Similarity=0.187 Sum_probs=104.4
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhcc-CCceeeEEEeec--CCcccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQ-GGQRVGFEVVTL--DDRRAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~-~~~~ig~~~q~~--~~~~~~~~~~~~~~~~ 77 (193)
|++.+||++.|.||||||||||+|+|+|+++|++|+|.++|..+...+. ..+.+-|+-..+ -..+++++|+.+....
T Consensus 23 f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa~ENL~F~~~~ 102 (209)
T COG4133 23 FTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFWQRF 102 (209)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhccccccchhhHHHHHHHHHHH
Confidence 6789999999999999999999999999999999999999987743332 223344443333 3456777776553211
Q ss_pred CCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHHhC
Q 029421 78 SYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILES 136 (193)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~ 136 (193)
.. ........+.++.+++..+. +++.+++.||||| +++|......+..++..-..
T Consensus 103 ~~----~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~ 178 (209)
T COG4133 103 HG----SGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAA 178 (209)
T ss_pred hC----CCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhc
Confidence 10 01112234556666654332 6789999999999 79999999999999988665
Q ss_pred -CCcEEEEecCCCCCCChh
Q 029421 137 -NIPVLASIPAPKSGRDIP 154 (193)
Q Consensus 137 -g~tvl~~~~~~~~tHd~~ 154 (193)
|--||++ ||...
T Consensus 179 ~GGiVllt------tHq~l 191 (209)
T COG4133 179 QGGIVLLT------THQPL 191 (209)
T ss_pred CCCEEEEe------cCCcc
Confidence 8888999 78743
No 329
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.92 E-value=2e-25 Score=204.21 Aligned_cols=172 Identities=13% Similarity=0.198 Sum_probs=123.3
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh--hccCCceeeEEEeecCC-cccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE--IRQGGQRVGFEVVTLDD-RRAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~--~~~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~ 77 (193)
|+|++|+.++|+|||||||||++++|.+++.|++|+|.+||.++.. .+..+.++|.|.|+|.. ..+..+|+.+..+.
T Consensus 374 l~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~d 453 (1228)
T KOG0055|consen 374 LKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPD 453 (1228)
T ss_pred EEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCc
Confidence 5789999999999999999999999999999999999999999743 34557799999999832 34566776654432
Q ss_pred CCCCCccc------ceeeehhh---hhh-hc-----cc---------ccccCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421 78 SYRWPTVG------RYKVDVAS---FEA-IA-----LP---------ELQVGADTDLFVIDEV-GKMELFSSSFFPAVLR 132 (193)
Q Consensus 78 ~~~~~~~~------~~~~~~~~---l~~-~~-----l~---------~~~l~~~p~llllDEp-~~LD~~~~~~~~~ll~ 132 (193)
.....-.+ ........ ++. +| |+ ..+++.+|++|||||| ++||+.++..+++.++
T Consensus 454 at~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd 533 (1228)
T KOG0055|consen 454 ATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALD 533 (1228)
T ss_pred ccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHH
Confidence 11000000 00000000 000 00 00 0118899999999999 6999999999999999
Q ss_pred HHhCCCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHHHH
Q 029421 133 ILESNIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLKDN 181 (193)
Q Consensus 133 ~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~~~ 181 (193)
....|.|.|++ +|++..+.+ +|++ +|+ .+..++.++|.+.
T Consensus 534 ~~~~grTTivV------aHRLStIrn-aD~I~v~~~G~--IvE~G~h~ELi~~ 577 (1228)
T KOG0055|consen 534 KASKGRTTIVV------AHRLSTIRN-ADKIAVMEEGK--IVEQGTHDELIAL 577 (1228)
T ss_pred HhhcCCeEEEE------eeehhhhhc-cCEEEEEECCE--EEEecCHHHHHhc
Confidence 98889999999 999999987 8884 333 3445667766554
No 330
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=5.3e-25 Score=192.15 Aligned_cols=174 Identities=13% Similarity=0.142 Sum_probs=122.2
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCCc-ccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDDR-RAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~~-~~~~~~~~~~~~~ 77 (193)
|+|++||++||+||||+||||+.++|..++.|++|+|.+||.++.+. ...+++||+|-|+|..+ .+..+|+.+....
T Consensus 489 fti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~ 568 (716)
T KOG0058|consen 489 FTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDN 568 (716)
T ss_pred eeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCC
Confidence 68999999999999999999999999999999999999999998543 34468899999998332 3566777665431
Q ss_pred CCCCCccc---ceeeehhhhhh--------hccc--------------ccccCCCCCEEEEecC-CCccccccchHHHHH
Q 029421 78 SYRWPTVG---RYKVDVASFEA--------IALP--------------ELQVGADTDLFVIDEV-GKMELFSSSFFPAVL 131 (193)
Q Consensus 78 ~~~~~~~~---~~~~~~~~l~~--------~~l~--------------~~~l~~~p~llllDEp-~~LD~~~~~~~~~ll 131 (193)
. ...... +..-..+.... +|-. ..+|+.||++|||||. ++||.++...+.+.+
T Consensus 569 ~-t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL 647 (716)
T KOG0058|consen 569 A-TDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEAL 647 (716)
T ss_pred C-CHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHH
Confidence 0 000000 00000000000 0100 0118899999999999 699999999999999
Q ss_pred HHHhCCCcEEEEecCCCCCCChhHHHHHhcCCCcE--EEEeCCCChhHHHHHH
Q 029421 132 RILESNIPVLASIPAPKSGRDIPAVARLRNHPGAT--IFTLSPGNRDSLKDNI 182 (193)
Q Consensus 132 ~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~~~~--~~~~~~~~~~~l~~~~ 182 (193)
..+.++.|||++ .|.+..++ -||++.+. -.+...++.+++.++-
T Consensus 648 ~~~~~~rTVlvI------AHRLSTV~-~Ad~Ivvi~~G~V~E~G~h~eLl~~~ 693 (716)
T KOG0058|consen 648 DRLMQGRTVLVI------AHRLSTVR-HADQIVVIDKGRVVEMGTHDELLSKP 693 (716)
T ss_pred HHhhcCCeEEEE------ehhhhHhh-hccEEEEEcCCeEEecccHHHHhhCc
Confidence 988888999999 99998886 47763211 1134445666666544
No 331
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.91 E-value=8.7e-25 Score=180.12 Aligned_cols=156 Identities=17% Similarity=0.225 Sum_probs=121.5
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEch-----hhccCCceeeEEEeecCCcccc----cccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTG-----EIRQGGQRVGFEVVTLDDRRAP----LASI 71 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~-----~~~~~~~~ig~~~q~~~~~~~~----~~~~ 71 (193)
|++.+|+.++|+|.||||||||-++|.++++++ |+|+|+|.++. ..+..++++-.+||+|++..++ .+.+
T Consensus 308 l~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII 386 (534)
T COG4172 308 LTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQII 386 (534)
T ss_pred eEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHh
Confidence 578899999999999999999999999999987 99999999873 3345577889999999654433 2222
Q ss_pred cCCCCCC-CCCCcccceeeehhhhhhhcccccc---------------------cCCCCCEEEEecC-CCccccccchHH
Q 029421 72 NASSPES-YRWPTVGRYKVDVASFEAIALPELQ---------------------VGADTDLFVIDEV-GKMELFSSSFFP 128 (193)
Q Consensus 72 ~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~---------------------l~~~p~llllDEp-~~LD~~~~~~~~ 128 (193)
.....-. ......+..+++.+.++.+|+..-. ++.+|++++|||| ++||...+.++.
T Consensus 387 ~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv 466 (534)
T COG4172 387 EEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVL 466 (534)
T ss_pred hhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHH
Confidence 2221110 0112223345566788888875321 8899999999999 699999999999
Q ss_pred HHHHHHhC--CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 129 AVLRILES--NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 129 ~ll~~l~~--g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
++++.+.+ |.+-+++ |||+..+..+|+++
T Consensus 467 ~LLr~LQ~k~~LsYLFI------SHDL~VvrAl~~~v 497 (534)
T COG4172 467 DLLRDLQQKHGLSYLFI------SHDLAVVRALCHRV 497 (534)
T ss_pred HHHHHHHHHhCCeEEEE------eccHHHHHHhhceE
Confidence 99999865 9999999 99999999999994
No 332
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=8.6e-25 Score=195.08 Aligned_cols=146 Identities=12% Similarity=0.172 Sum_probs=99.9
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecCCc-ccccccccC------
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDR-RAPLASINA------ 73 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~~-~~~~~~~~~------ 73 (193)
|+|.+|++++|+||||||||||+|+|+|+++|++|+|.++|.. .++|++|+.... .+....+..
T Consensus 22 ~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~---------~i~~~~q~~~~~~~~~~~~v~~~~~~~~ 92 (638)
T PRK10636 22 ATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW---------QLAWVNQETPALPQPALEYVIDGDREYR 92 (638)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC---------EEEEEecCCCCCCCCHHHHHHHhhHHHH
Confidence 6799999999999999999999999999999999999998732 355655532110 111100000
Q ss_pred ------------CC-CCC---CC----CCcccceeeehhhhhhhcccc---------cc------------cCCCCCEEE
Q 029421 74 ------------SS-PES---YR----WPTVGRYKVDVASFEAIALPE---------LQ------------VGADTDLFV 112 (193)
Q Consensus 74 ------------~~-~~~---~~----~~~~~~~~~~~~~l~~~~l~~---------~~------------l~~~p~lll 112 (193)
.. ... .. ...........+.++.+++.. ++ |+.+|++||
T Consensus 93 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA~aL~~~P~lLL 172 (638)
T PRK10636 93 QLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLL 172 (638)
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHHHHHHccCCCEEE
Confidence 00 000 00 000001123345666777641 11 889999999
Q ss_pred EecC-CCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 113 IDEV-GKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 113 lDEp-~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
|||| ++||+.++..+.++++.+ +.|||+| |||..++.++||++
T Consensus 173 LDEPtn~LD~~~~~~L~~~L~~~--~~tviiv------sHd~~~l~~~~d~i 216 (638)
T PRK10636 173 LDEPTNHLDLDAVIWLEKWLKSY--QGTLILI------SHDRDFLDPIVDKI 216 (638)
T ss_pred EcCCCCcCCHHHHHHHHHHHHhC--CCeEEEE------eCCHHHHHHhcCEE
Confidence 9999 699999988777777654 5799999 99999999999983
No 333
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.91 E-value=7.9e-25 Score=184.48 Aligned_cols=174 Identities=16% Similarity=0.164 Sum_probs=116.4
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEch--hhccCCceeeEEEeecCCc-ccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTG--EIRQGGQRVGFEVVTLDDR-RAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~--~~~~~~~~ig~~~q~~~~~-~~~~~~~~~~~~~ 77 (193)
|++.+|+.++|+||||||||||.|+|.|..+|.+|.|++||-++. +.....+.+||.||+...+ -+.-+|+.-....
T Consensus 357 F~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~ 436 (580)
T COG4618 357 FALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEE 436 (580)
T ss_pred eEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhcccc
Confidence 689999999999999999999999999999999999999998874 4456689999999987322 2444453211000
Q ss_pred CCCC--Ccccceeeehhhhhhh--ccc--------cc------------ccCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421 78 SYRW--PTVGRYKVDVASFEAI--ALP--------EL------------QVGADTDLFVIDEV-GKMELFSSSFFPAVLR 132 (193)
Q Consensus 78 ~~~~--~~~~~~~~~~~~l~~~--~l~--------~~------------~l~~~p~llllDEp-~~LD~~~~~~~~~ll~ 132 (193)
.... ....+...+.+..-++ |.+ .+ .+..+|.+++|||| ++||.....-+.+.+.
T Consensus 437 ~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~ 516 (580)
T COG4618 437 ADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAIL 516 (580)
T ss_pred CCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHH
Confidence 0000 0000000011111111 000 00 17789999999999 6999999887777777
Q ss_pred HHhC-CCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHHHHHH
Q 029421 133 ILES-NIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLKDNIY 183 (193)
Q Consensus 133 ~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~~~~~ 183 (193)
..++ |.|+|++ +|... +...+|++ +|. .-..++++++.+++.
T Consensus 517 ~~k~rG~~vvvi------aHRPs-~L~~~Dkilvl~~G~--~~~FG~r~eVLa~~~ 563 (580)
T COG4618 517 AAKARGGTVVVI------AHRPS-ALASVDKILVLQDGR--IAAFGPREEVLAKVL 563 (580)
T ss_pred HHHHcCCEEEEE------ecCHH-HHhhcceeeeecCCh--HHhcCCHHHHHHHhc
Confidence 7766 9999999 99965 55678883 122 123356667766654
No 334
>PLN03073 ABC transporter F family; Provisional
Probab=99.91 E-value=7.9e-25 Score=196.78 Aligned_cols=143 Identities=15% Similarity=0.137 Sum_probs=100.7
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecCCcccccccccCCCCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPLASINASSPESYR 80 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~ 80 (193)
|+|.+|++++|+||||||||||+|+|+|+++|++|+|.+++ +.++||++|++....+...+........
T Consensus 530 l~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~---------~~~igyv~Q~~~~~l~~~~~~~~~~~~~-- 598 (718)
T PLN03073 530 FGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA---------KVRMAVFSQHHVDGLDLSSNPLLYMMRC-- 598 (718)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC---------ceeEEEEeccccccCCcchhHHHHHHHh--
Confidence 57899999999999999999999999999999999998754 2468999997522222222111000000
Q ss_pred CCcccceeeehhhhhhhcccc---------cc------------cCCCCCEEEEecC-CCccccccchHHHHHHHHhCCC
Q 029421 81 WPTVGRYKVDVASFEAIALPE---------LQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILESNI 138 (193)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~l~~---------~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~g~ 138 (193)
.... ......+.++.+++.. ++ ++.+|++|||||| ++||+.++..+.+.+... +.
T Consensus 599 ~~~~-~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~g 675 (718)
T PLN03073 599 FPGV-PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--QG 675 (718)
T ss_pred cCCC-CHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC
Confidence 0000 0122334555555531 11 7899999999999 699999887666655543 34
Q ss_pred cEEEEecCCCCCCChhHHHHHhcCC
Q 029421 139 PVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 139 tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
|||++ |||..++..+||++
T Consensus 676 tvIiv------SHd~~~i~~~~drv 694 (718)
T PLN03073 676 GVLMV------SHDEHLISGSVDEL 694 (718)
T ss_pred EEEEE------ECCHHHHHHhCCEE
Confidence 99999 99999999999983
No 335
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.91 E-value=4.3e-25 Score=210.23 Aligned_cols=154 Identities=15% Similarity=0.114 Sum_probs=113.7
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcc---cCCCCeEEeceEchhhccCCceeeEEEeec--CCcccccccccCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLK---ASNPSLKVQGFYTGEIRQGGQRVGFEVVTL--DDRRAPLASINASS 75 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~---~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~ 75 (193)
+++++|++++|+||||||||||+++|+|..+ |++|+|.++|++... ..++.+||++|+. .+..++.+++.+..
T Consensus 784 ~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~--~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a 861 (1394)
T TIGR00956 784 GWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS--SFQRSIGYVQQQDLHLPTSTVRESLRFSA 861 (1394)
T ss_pred EEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh--hhhcceeeecccccCCCCCCHHHHHHHHH
Confidence 4689999999999999999999999999997 788999999998742 3456799999975 34456666654421
Q ss_pred CCCC--CCCcccceeeehhhhhhhcccc------------cc------------cCCCCC-EEEEecC-CCccccccchH
Q 029421 76 PESY--RWPTVGRYKVDVASFEAIALPE------------LQ------------VGADTD-LFVIDEV-GKMELFSSSFF 127 (193)
Q Consensus 76 ~~~~--~~~~~~~~~~~~~~l~~~~l~~------------~~------------l~~~p~-llllDEp-~~LD~~~~~~~ 127 (193)
.... ............+.++.+++.+ ++ ++.+|+ +|+|||| +|||+.++..+
T Consensus 862 ~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i 941 (1394)
T TIGR00956 862 YLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSI 941 (1394)
T ss_pred HhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHH
Confidence 1000 0111111122344555555432 22 788997 9999999 69999999999
Q ss_pred HHHHHHHhC-CCcEEEEecCCCCCCChhH-HHHHhcC
Q 029421 128 PAVLRILES-NIPVLASIPAPKSGRDIPA-VARLRNH 162 (193)
Q Consensus 128 ~~ll~~l~~-g~tvl~~~~~~~~tHd~~~-~~~~~d~ 162 (193)
.++++.+++ |.|||++ +|+++. +.+.+|+
T Consensus 942 ~~~L~~la~~g~tvI~t------~H~~~~~~~~~~D~ 972 (1394)
T TIGR00956 942 CKLMRKLADHGQAILCT------IHQPSAILFEEFDR 972 (1394)
T ss_pred HHHHHHHHHcCCEEEEE------ecCCCHHHHHhcCE
Confidence 999999866 9999999 999876 4567888
No 336
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.91 E-value=2.1e-24 Score=189.80 Aligned_cols=144 Identities=14% Similarity=0.125 Sum_probs=101.4
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCCc-ccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDDR-RAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~~-~~~~~~~~~~~~~ 77 (193)
|+|++|+.++|+||||||||||+++|+|+++|++|+|.++|.+.... ...++.++|++|++.-+ .+..+|. ...
T Consensus 344 ~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~-~~~-- 420 (547)
T PRK10522 344 LTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPEG-KPA-- 420 (547)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhcccc-Cch--
Confidence 57899999999999999999999999999999999999999987532 23467899999987311 1111220 000
Q ss_pred CCCCCcccceeeehhhhhhhccc-------------cc------------ccCCCCCEEEEecC-CCccccccchHHHHH
Q 029421 78 SYRWPTVGRYKVDVASFEAIALP-------------EL------------QVGADTDLFVIDEV-GKMELFSSSFFPAVL 131 (193)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~l~-------------~~------------~l~~~p~llllDEp-~~LD~~~~~~~~~ll 131 (193)
. .....+.++.+++. .+ .++.+|+++||||| ++||+.+...+.+.+
T Consensus 421 ----~----~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l 492 (547)
T PRK10522 421 ----N----PALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVL 492 (547)
T ss_pred ----H----HHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 0 00000111111110 11 17899999999999 699999988776666
Q ss_pred HH-HhC-CCcEEEEecCCCCCCChhHHHHHhcC
Q 029421 132 RI-LES-NIPVLASIPAPKSGRDIPAVARLRNH 162 (193)
Q Consensus 132 ~~-l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~ 162 (193)
.. ++. |+|+|++ ||+.+.+ +.||+
T Consensus 493 ~~~~~~~~~tvi~i------tH~~~~~-~~~d~ 518 (547)
T PRK10522 493 LPLLQEMGKTIFAI------SHDDHYF-IHADR 518 (547)
T ss_pred HHHHHhCCCEEEEE------EechHHH-HhCCE
Confidence 54 444 8999999 9998654 57888
No 337
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.90 E-value=1.5e-24 Score=178.68 Aligned_cols=174 Identities=18% Similarity=0.284 Sum_probs=129.2
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhccc-----CCCCeEEeceEch-----hhc-cCCceeeEEEeecCCcccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKA-----SNPSLKVQGFYTG-----EIR-QGGQRVGFEVVTLDDRRAPLA 69 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~-----~~G~i~~~g~~~~-----~~~-~~~~~ig~~~q~~~~~~~~~~ 69 (193)
|+|.+||.++|+|.||||||-..+.|+++++. -+|+|.|+|.++- ..+ ..+.+|+++||+|....+++.
T Consensus 31 f~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~ 110 (534)
T COG4172 31 FDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLH 110 (534)
T ss_pred eeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEecccccccCcHh
Confidence 67899999999999999999999999999975 3689999999862 122 235689999999854444443
Q ss_pred cccCCCCC----CCCCCcccceeeehhhhhhhcccccc-----------------------cCCCCCEEEEecC-CCccc
Q 029421 70 SINASSPE----SYRWPTVGRYKVDVASFEAIALPELQ-----------------------VGADTDLFVIDEV-GKMEL 121 (193)
Q Consensus 70 ~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~l~~~~-----------------------l~~~p~llllDEp-~~LD~ 121 (193)
.+.-...+ ...........+..++++.+|+.+-. ++++|++||.||| ++||.
T Consensus 111 tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDV 190 (534)
T COG4172 111 TIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDV 190 (534)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhh
Confidence 32211111 11112223335567788888876432 8899999999999 69999
Q ss_pred cccchHHHHHHHHhC--CCcEEEEecCCCCCCChhHHHHHhcCCCcEE--EEeCCCChhHHHH
Q 029421 122 FSSSFFPAVLRILES--NIPVLASIPAPKSGRDIPAVARLRNHPGATI--FTLSPGNRDSLKD 180 (193)
Q Consensus 122 ~~~~~~~~ll~~l~~--g~tvl~~~~~~~~tHd~~~~~~~~d~~~~~~--~~~~~~~~~~l~~ 180 (193)
..+.++.++++.++. |.+++++ |||+..+.++||++.+.- ..++.+..+.++.
T Consensus 191 tvQaQIL~Ll~~Lq~~~gMa~lfI------THDL~iVr~~ADrV~VM~~G~ivE~~~t~~lF~ 247 (534)
T COG4172 191 TVQAQILDLLKELQAELGMAILFI------THDLGIVRKFADRVYVMQHGEIVETGTTETLFA 247 (534)
T ss_pred hhHHHHHHHHHHHHHHhCcEEEEE------eccHHHHHHhhhhEEEEeccEEeecCcHHHHhh
Confidence 999999999999875 9999999 999999999999975432 2455555555443
No 338
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.90 E-value=3.8e-24 Score=191.55 Aligned_cols=145 Identities=12% Similarity=0.090 Sum_probs=101.8
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecC-CcccccccccCCCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD-DRRAPLASINASSPESY 79 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~-~~~~~~~~~~~~~~~~~ 79 (193)
|+|++|++++|+||||||||||+++|+|+++|++|+|.+++ +++++|++|++. ...+..+++.+......
T Consensus 473 l~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~---------~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~ 543 (659)
T TIGR00954 473 FEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA---------KGKLFYVPQRPYMTLGTLRDQIIYPDSSED 543 (659)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC---------CCcEEEECCCCCCCCcCHHHHHhcCCChhh
Confidence 57899999999999999999999999999999999998753 457999999872 22255566544321000
Q ss_pred CCCcccceeeehhhhhhhccc-----------------ccc------------cCCCCCEEEEecC-CCccccccchHHH
Q 029421 80 RWPTVGRYKVDVASFEAIALP-----------------ELQ------------VGADTDLFVIDEV-GKMELFSSSFFPA 129 (193)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~l~-----------------~~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ 129 (193)
............+.++.+++. .++ ++.+|+++||||| ++||+.++..+.+
T Consensus 544 ~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~ 623 (659)
T TIGR00954 544 MKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYR 623 (659)
T ss_pred hhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHH
Confidence 000000011122333333332 122 7899999999999 6999998877777
Q ss_pred HHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 130 VLRILESNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 130 ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.++.. |.|+|++ ||+.+.+ ++||++
T Consensus 624 ~l~~~--~~tvI~i------sH~~~~~-~~~d~i 648 (659)
T TIGR00954 624 LCREF--GITLFSV------SHRKSLW-KYHEYL 648 (659)
T ss_pred HHHHc--CCEEEEE------eCchHHH-HhCCEE
Confidence 66543 8999999 9998865 678873
No 339
>PLN03140 ABC transporter G family member; Provisional
Probab=99.90 E-value=9.9e-25 Score=207.74 Aligned_cols=155 Identities=14% Similarity=0.111 Sum_probs=113.3
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhccc--CCCCeEEeceEchhhccCCceeeEEEeec--CCcccccccccCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKA--SNPSLKVQGFYTGEIRQGGQRVGFEVVTL--DDRRAPLASINASSP 76 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~--~~G~i~~~g~~~~~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~ 76 (193)
+++++|++++|+|||||||||||++|+|..++ .+|+|.++|.+.... ..++.+||++|+. .+..++.+++.+...
T Consensus 901 ~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~-~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~ 979 (1470)
T PLN03140 901 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQE-TFARISGYCEQNDIHSPQVTVRESLIYSAF 979 (1470)
T ss_pred EEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChH-HhhhheEEEccccccCCCCcHHHHHHHHHH
Confidence 46889999999999999999999999999763 689999999875322 2345689999975 344566666544221
Q ss_pred CCC--CCCcccceeeehhhhhhhcccc-------------cc------------cCCCCCEEEEecC-CCccccccchHH
Q 029421 77 ESY--RWPTVGRYKVDVASFEAIALPE-------------LQ------------VGADTDLFVIDEV-GKMELFSSSFFP 128 (193)
Q Consensus 77 ~~~--~~~~~~~~~~~~~~l~~~~l~~-------------~~------------l~~~p~llllDEp-~~LD~~~~~~~~ 128 (193)
... ..........+.+.++.+++.+ ++ |+.+|++|+|||| +|||+.++..+.
T Consensus 980 lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~ 1059 (1470)
T PLN03140 980 LRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1059 (1470)
T ss_pred hCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Confidence 000 0011111122334555544432 22 8899999999999 699999999999
Q ss_pred HHHHHHhC-CCcEEEEecCCCCCCChh-HHHHHhcC
Q 029421 129 AVLRILES-NIPVLASIPAPKSGRDIP-AVARLRNH 162 (193)
Q Consensus 129 ~ll~~l~~-g~tvl~~~~~~~~tHd~~-~~~~~~d~ 162 (193)
++++.+++ |.|||++ +|+.+ .+.+++|+
T Consensus 1060 ~~L~~l~~~g~tVI~t------~Hq~~~~i~~~~D~ 1089 (1470)
T PLN03140 1060 RTVRNTVDTGRTVVCT------IHQPSIDIFEAFDE 1089 (1470)
T ss_pred HHHHHHHHCCCEEEEE------eCCCCHHHHHhCCE
Confidence 99999876 9999999 99987 46788998
No 340
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.90 E-value=2.1e-24 Score=190.13 Aligned_cols=146 Identities=12% Similarity=0.103 Sum_probs=103.5
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCCc-ccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDDR-RAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~~-~~~~~~~~~~~~~ 77 (193)
|++++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ...++.++|++|++.-+ .+..+|..
T Consensus 363 ~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~----- 437 (555)
T TIGR01194 363 LRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEG----- 437 (555)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhcccc-----
Confidence 57899999999999999999999999999999999999999987532 23456799999986311 12222210
Q ss_pred CCCCCcccceeeehhhhhhhccc--------------ccc------------cCCCCCEEEEecC-CCccccccchHHH-
Q 029421 78 SYRWPTVGRYKVDVASFEAIALP--------------ELQ------------VGADTDLFVIDEV-GKMELFSSSFFPA- 129 (193)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~l~--------------~~~------------l~~~p~llllDEp-~~LD~~~~~~~~~- 129 (193)
+.. ......+.++.+++. .++ ++.+|+++||||| ++||+.++..+.+
T Consensus 438 ----~~~-~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~ 512 (555)
T TIGR01194 438 ----EHA-SLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEE 512 (555)
T ss_pred ----cch-hHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHH
Confidence 000 001111222222221 121 7899999999999 6999999887765
Q ss_pred HHHHHh-CCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 130 VLRILE-SNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 130 ll~~l~-~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
+++.++ .|+|+|++ ||+.+.+ +.||++
T Consensus 513 l~~~~~~~~~tiiii------sH~~~~~-~~~d~i 540 (555)
T TIGR01194 513 LLPDLKRQGKTIIII------SHDDQYF-ELADQI 540 (555)
T ss_pred HHHHHHhCCCEEEEE------eccHHHH-HhCCEE
Confidence 555554 48999999 9998755 578883
No 341
>PLN03232 ABC transporter C family member; Provisional
Probab=99.90 E-value=2.2e-24 Score=206.84 Aligned_cols=163 Identities=10% Similarity=0.112 Sum_probs=119.0
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCCc-ccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDDR-RAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~~-~~~~~~~~~~~~~ 77 (193)
|+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++.+. ...+++++|+||++.-+ .+..+|+.....
T Consensus 1257 l~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~- 1335 (1495)
T PLN03232 1257 FFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSE- 1335 (1495)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCCC-
Confidence 57899999999999999999999999999999999999999998543 34578899999998322 355566543211
Q ss_pred CCCCCcccceeeehhhhhhhc-----------cc--------ccc------------cCCCCCEEEEecC-CCccccccc
Q 029421 78 SYRWPTVGRYKVDVASFEAIA-----------LP--------ELQ------------VGADTDLFVIDEV-GKMELFSSS 125 (193)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~-----------l~--------~~~------------l~~~p~llllDEp-~~LD~~~~~ 125 (193)
... +...+.++..+ +. .++ ++.+|++|||||| +++|+.+..
T Consensus 1336 ---~sd----eei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~ 1408 (1495)
T PLN03232 1336 ---HND----ADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDS 1408 (1495)
T ss_pred ---CCH----HHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHH
Confidence 000 01111122111 11 111 7899999999999 699999998
Q ss_pred hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHHH
Q 029421 126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLKD 180 (193)
Q Consensus 126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~~ 180 (193)
.+.+.++...+++|+|++ +|+++.+.. ||++ +|.++ +.+++++|.+
T Consensus 1409 ~Iq~~L~~~~~~~TvI~I------AHRl~ti~~-~DrIlVL~~G~iv--E~Gt~~eLl~ 1458 (1495)
T PLN03232 1409 LIQRTIREEFKSCTMLVI------AHRLNTIID-CDKILVLSSGQVL--EYDSPQELLS 1458 (1495)
T ss_pred HHHHHHHHHcCCCEEEEE------eCCHHHHHh-CCEEEEEECCEEE--EECCHHHHHh
Confidence 899998887678999999 999988765 8884 34443 3456666654
No 342
>PLN03130 ABC transporter C family member; Provisional
Probab=99.90 E-value=2.9e-24 Score=206.62 Aligned_cols=164 Identities=10% Similarity=0.130 Sum_probs=120.2
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCCc-ccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDDR-RAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~~-~~~~~~~~~~~~~ 77 (193)
|+|++||.+||+|++|||||||+++|+|+++|++|+|.+||.++... ...|++++++||++..+ .+..+|+......
T Consensus 1260 ~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~ 1339 (1622)
T PLN03130 1260 FEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEH 1339 (1622)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCCCC
Confidence 67999999999999999999999999999999999999999998543 34578899999998322 3555665432110
Q ss_pred CCCCCcccceeeehhhhhhhcc-----------c--------ccc------------cCCCCCEEEEecC-CCccccccc
Q 029421 78 SYRWPTVGRYKVDVASFEAIAL-----------P--------ELQ------------VGADTDLFVIDEV-GKMELFSSS 125 (193)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~l-----------~--------~~~------------l~~~p~llllDEp-~~LD~~~~~ 125 (193)
. .....++++..++ . .++ ++.+|++|||||| +++|..+..
T Consensus 1340 ----t----deei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~ 1411 (1622)
T PLN03130 1340 ----N----DADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDA 1411 (1622)
T ss_pred ----C----HHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHH
Confidence 0 0111122222111 1 111 7899999999999 699999999
Q ss_pred hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHHHH
Q 029421 126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLKDN 181 (193)
Q Consensus 126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~~~ 181 (193)
.+.+.++...+++|+|++ +|+++.+.. ||++ +|.+ +..+++++|.++
T Consensus 1412 ~Iq~~I~~~~~~~TvI~I------AHRL~tI~~-~DrIlVLd~G~I--vE~Gt~~eLl~~ 1462 (1622)
T PLN03130 1412 LIQKTIREEFKSCTMLII------AHRLNTIID-CDRILVLDAGRV--VEFDTPENLLSN 1462 (1622)
T ss_pred HHHHHHHHHCCCCEEEEE------eCChHHHHh-CCEEEEEECCEE--EEeCCHHHHHhC
Confidence 999999887679999999 999998865 8984 3443 344566666543
No 343
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.90 E-value=2.4e-24 Score=190.88 Aligned_cols=146 Identities=18% Similarity=0.213 Sum_probs=110.8
Q ss_pred cccCCCEEEEEcCCCCcHHHHHHHHHhhccc---CCCCeEEeceEchhhccCCceeeEEEeec--CCcccccccccCCCC
Q 029421 2 AAGAGKCFLVTGPPGVGKTTLIMRVLESLKA---SNPSLKVQGFYTGEIRQGGQRVGFEVVTL--DDRRAPLASINASSP 76 (193)
Q Consensus 2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~---~~G~i~~~g~~~~~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~ 76 (193)
.+++||+.||+||+||||||||++|+|-... .+|+|.+||+... .+..++.+||+.|+. .+..++.+.+.+...
T Consensus 52 ~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~-~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~ 130 (613)
T KOG0061|consen 52 TAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRD-SRSFRKISGYVQQDDVLLPTLTVRETLRFSAL 130 (613)
T ss_pred EEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCc-hhhhhheeEEEcccccccccccHHHHHHHHHH
Confidence 4789999999999999999999999999874 6899999995542 334567899999975 456666665544322
Q ss_pred CCCC--CCcccceeeehhhhhhhcccccc-------------------------cCCCCCEEEEecC-CCccccccchHH
Q 029421 77 ESYR--WPTVGRYKVDVASFEAIALPELQ-------------------------VGADTDLFVIDEV-GKMELFSSSFFP 128 (193)
Q Consensus 77 ~~~~--~~~~~~~~~~~~~l~~~~l~~~~-------------------------l~~~p~llllDEp-~~LD~~~~~~~~ 128 (193)
.... ....++..++.+.++.+++.... ++.||.++++||| +|||..+..++.
T Consensus 131 lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv 210 (613)
T KOG0061|consen 131 LRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVV 210 (613)
T ss_pred hcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHH
Confidence 1111 12223334556666666665322 8899999999999 699999999999
Q ss_pred HHHHHHhC-CCcEEEEecCCC
Q 029421 129 AVLRILES-NIPVLASIPAPK 148 (193)
Q Consensus 129 ~ll~~l~~-g~tvl~~~~~~~ 148 (193)
++++.+++ |+|||+++|.|.
T Consensus 211 ~~Lk~lA~~grtVi~tIHQPs 231 (613)
T KOG0061|consen 211 QLLKRLARSGRTVICTIHQPS 231 (613)
T ss_pred HHHHHHHhCCCEEEEEEeCCc
Confidence 99999987 999999987653
No 344
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.90 E-value=4.8e-24 Score=203.53 Aligned_cols=165 Identities=10% Similarity=0.165 Sum_probs=120.0
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhccc------------------------------------------------
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKA------------------------------------------------ 32 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~------------------------------------------------ 32 (193)
|+|++|+.+||+||||||||||+++|+|+++|
T Consensus 1189 l~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1268 (1466)
T PTZ00265 1189 FSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGE 1268 (1466)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 57999999999999999999999999999998
Q ss_pred ------CCCCeEEeceEchhh--ccCCceeeEEEeecCC-cccccccccCCCCCCCCCCcccceeeehhhhhhhcc----
Q 029421 33 ------SNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDD-RRAPLASINASSPESYRWPTVGRYKVDVASFEAIAL---- 99 (193)
Q Consensus 33 ------~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l---- 99 (193)
++|+|.++|.++... ...++.+|||+|++.. ..+..+|+.+..... .. +...++++..++
T Consensus 1269 ~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~a------t~-eeI~~A~k~A~l~~fI 1341 (1466)
T PTZ00265 1269 DSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDA------TR-EDVKRACKFAAIDEFI 1341 (1466)
T ss_pred ccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCC------CH-HHHHHHHHHcCCHHHH
Confidence 699999999998543 3557889999999843 346677766643211 00 011111111111
Q ss_pred -------c--------cc------------ccCCCCCEEEEecC-CCccccccchHHHHHHHHh--CCCcEEEEecCCCC
Q 029421 100 -------P--------EL------------QVGADTDLFVIDEV-GKMELFSSSFFPAVLRILE--SNIPVLASIPAPKS 149 (193)
Q Consensus 100 -------~--------~~------------~l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~--~g~tvl~~~~~~~~ 149 (193)
. .+ +++.+|++|||||| ++||+.+.+.+.+.+..+. +++|+|++
T Consensus 1342 ~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiI------ 1415 (1466)
T PTZ00265 1342 ESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITI------ 1415 (1466)
T ss_pred HhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEE------
Confidence 1 01 18899999999999 6999999988888888874 48999999
Q ss_pred CCChhHHHHHhcCCC--------cEEEEeCCCChhHHHH
Q 029421 150 GRDIPAVARLRNHPG--------ATIFTLSPGNRDSLKD 180 (193)
Q Consensus 150 tHd~~~~~~~~d~~~--------~~~~~~~~~~~~~l~~ 180 (193)
+|++..+. .||++- |.+ +...+..++|.+
T Consensus 1416 aHRlsti~-~aD~Ivvl~~~~~~G~i-v~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1416 AHRIASIK-RSDKIVVFNNPDRTGSF-VQAHGTHEELLS 1452 (1466)
T ss_pred echHHHHH-hCCEEEEEeCCCCCCCE-EEEecCHHHHHh
Confidence 99997765 589841 222 224566677764
No 345
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.90 E-value=1.1e-23 Score=187.99 Aligned_cols=146 Identities=10% Similarity=0.116 Sum_probs=97.4
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecCCc--ccccccc-------
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDR--RAPLASI------- 71 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~~--~~~~~~~------- 71 (193)
|+|++|++++|+||||||||||+|+|+|+++|++|+|.++|.. .++|++|.+... .+.++..
T Consensus 24 ~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~---------~~~~l~q~~~~~~~~~v~~~~~~~~~~~ 94 (635)
T PRK11147 24 LHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDL---------IVARLQQDPPRNVEGTVYDFVAEGIEEQ 94 (635)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCC---------EEEEeccCCCCCCCCCHHHHHHHhhHHH
Confidence 6789999999999999999999999999999999999987631 123333321000 0000000
Q ss_pred ----------cC--CC---CCC----------CC-CCcccceeeehhhhhhhccc------ccc------------cCCC
Q 029421 72 ----------NA--SS---PES----------YR-WPTVGRYKVDVASFEAIALP------ELQ------------VGAD 107 (193)
Q Consensus 72 ----------~~--~~---~~~----------~~-~~~~~~~~~~~~~l~~~~l~------~~~------------l~~~ 107 (193)
.. .. ... .. ...........++++.+++. .++ |+.+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~LSgGekqRv~LAraL~~~ 174 (635)
T PRK11147 95 AEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDPDAALSSLSGGWLRKAALGRALVSN 174 (635)
T ss_pred HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCCCCchhhcCHHHHHHHHHHHHHhcC
Confidence 00 00 000 00 00000112234455666653 122 8899
Q ss_pred CCEEEEecC-CCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 108 TDLFVIDEV-GKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 108 p~llllDEp-~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
|++|||||| ++||+.++..+.++++.+. .|||+| |||..++..+||++
T Consensus 175 P~lLLLDEPt~~LD~~~~~~L~~~L~~~~--~tvliv------sHd~~~l~~~~d~i 223 (635)
T PRK11147 175 PDVLLLDEPTNHLDIETIEWLEGFLKTFQ--GSIIFI------SHDRSFIRNMATRI 223 (635)
T ss_pred CCEEEEcCCCCccCHHHHHHHHHHHHhCC--CEEEEE------eCCHHHHHHhcCeE
Confidence 999999999 6999999988888887763 599999 99999999999984
No 346
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.89 E-value=6.4e-24 Score=202.25 Aligned_cols=157 Identities=12% Similarity=0.065 Sum_probs=115.4
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhc----ccCCCCeEEeceEchhh-ccCCceeeEEEeec--CCcccccccccC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESL----KASNPSLKVQGFYTGEI-RQGGQRVGFEVVTL--DDRRAPLASINA 73 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~----~~~~G~i~~~g~~~~~~-~~~~~~ig~~~q~~--~~~~~~~~~~~~ 73 (193)
+++++||+++|+||||||||||||+|+|.. +|++|+|.++|.+.... ...++.++|++|+. .+..++.+++.+
T Consensus 82 ~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f 161 (1394)
T TIGR00956 82 GLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDF 161 (1394)
T ss_pred EEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHH
Confidence 468899999999999999999999999986 57899999999887432 23456799999975 444566666544
Q ss_pred CCCCCC------CCCcccce-eeehhhhhhhccccc-------------c------------cCCCCCEEEEecC-CCcc
Q 029421 74 SSPESY------RWPTVGRY-KVDVASFEAIALPEL-------------Q------------VGADTDLFVIDEV-GKME 120 (193)
Q Consensus 74 ~~~~~~------~~~~~~~~-~~~~~~l~~~~l~~~-------------~------------l~~~p~llllDEp-~~LD 120 (193)
...... .....+.. ......++.+++.+. + ++.+|+++++||| +|||
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD 241 (1394)
T TIGR00956 162 AARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLD 241 (1394)
T ss_pred HHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcC
Confidence 321000 00111111 112335666666432 1 7899999999999 6999
Q ss_pred ccccchHHHHHHHHh-C-CCcEEEEecCCCCCCCh-hHHHHHhcCC
Q 029421 121 LFSSSFFPAVLRILE-S-NIPVLASIPAPKSGRDI-PAVARLRNHP 163 (193)
Q Consensus 121 ~~~~~~~~~ll~~l~-~-g~tvl~~~~~~~~tHd~-~~~~~~~d~~ 163 (193)
+.++..+.++++.++ + |.|||++ +|+. +.+.+++|++
T Consensus 242 ~~~~~~i~~~L~~la~~~g~tvii~------~Hq~~~~i~~l~D~v 281 (1394)
T TIGR00956 242 SATALEFIRALKTSANILDTTPLVA------IYQCSQDAYELFDKV 281 (1394)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEE------ecCCCHHHHHhhceE
Confidence 999999999999986 3 8999999 8986 6788899983
No 347
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.89 E-value=5.2e-24 Score=203.32 Aligned_cols=155 Identities=13% Similarity=0.158 Sum_probs=109.9
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEe-ceEchhh--ccCCceeeEEEeecCC-cccccccccCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQ-GFYTGEI--RQGGQRVGFEVVTLDD-RRAPLASINASSP 76 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~-g~~~~~~--~~~~~~ig~~~q~~~~-~~~~~~~~~~~~~ 76 (193)
|+|++|++++|+||||||||||+++|+|+++|++|+|.++ |.++... ...++.+||++|++.. ..+..+|+.+...
T Consensus 406 l~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~ 485 (1466)
T PTZ00265 406 FTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLY 485 (1466)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCC
Confidence 5789999999999999999999999999999999999995 5665322 2345779999998732 2356666655321
Q ss_pred CCC---------CC---------C--------------------------------cccceeeehhhhhhhccc------
Q 029421 77 ESY---------RW---------P--------------------------------TVGRYKVDVASFEAIALP------ 100 (193)
Q Consensus 77 ~~~---------~~---------~--------------------------------~~~~~~~~~~~l~~~~l~------ 100 (193)
... .. . .........++++.+++.
T Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~l 565 (1466)
T PTZ00265 486 SLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSAL 565 (1466)
T ss_pred CccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhC
Confidence 000 00 0 000001112222222221
Q ss_pred -------------ccc------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh--CCCcEEEEecCCCCCCC
Q 029421 101 -------------ELQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE--SNIPVLASIPAPKSGRD 152 (193)
Q Consensus 101 -------------~~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~--~g~tvl~~~~~~~~tHd 152 (193)
.++ ++.+|++|||||| ++||+.++..+.+.++.+. .|.|+|++ +|+
T Consensus 566 p~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiI------sHr 639 (1466)
T PTZ00265 566 PDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIII------AHR 639 (1466)
T ss_pred ccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEE------eCC
Confidence 111 8899999999999 6999999999999998885 38999999 999
Q ss_pred hhHHHHHhcC
Q 029421 153 IPAVARLRNH 162 (193)
Q Consensus 153 ~~~~~~~~d~ 162 (193)
+..+ +.||+
T Consensus 640 ls~i-~~aD~ 648 (1466)
T PTZ00265 640 LSTI-RYANT 648 (1466)
T ss_pred HHHH-HhCCE
Confidence 9877 57887
No 348
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.89 E-value=9.2e-24 Score=202.82 Aligned_cols=172 Identities=12% Similarity=0.167 Sum_probs=122.6
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCCc-ccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDDR-RAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~~-~~~~~~~~~~~~~ 77 (193)
|+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++... ...+++++++||++.-+ .+..+|+... ..
T Consensus 1307 ~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~-~~ 1385 (1522)
T TIGR00957 1307 VTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPF-SQ 1385 (1522)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcc-cC
Confidence 57999999999999999999999999999999999999999998543 34578899999998322 3555565321 00
Q ss_pred CCCCCcccceeeehhhhhhhcc-----------c--------ccc------------cCCCCCEEEEecC-CCccccccc
Q 029421 78 SYRWPTVGRYKVDVASFEAIAL-----------P--------ELQ------------VGADTDLFVIDEV-GKMELFSSS 125 (193)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~l-----------~--------~~~------------l~~~p~llllDEp-~~LD~~~~~ 125 (193)
... +...++++..++ . .++ ++.+|++|||||| +++|..+..
T Consensus 1386 ---~sd----eei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~ 1458 (1522)
T TIGR00957 1386 ---YSD----EEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDN 1458 (1522)
T ss_pred ---CCH----HHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHH
Confidence 000 001112221111 1 011 7899999999999 699999998
Q ss_pred hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHHHHHHHHHHHHh
Q 029421 126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLKDNIYYQLTDAV 190 (193)
Q Consensus 126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~ 190 (193)
.+.+.++...+++|||++ +|+++.+.. ||++ +|.+ ++.+++++|.++ ...+++.+
T Consensus 1459 ~Iq~~l~~~~~~~TvI~I------AHRl~ti~~-~DrIlVld~G~I--vE~G~~~eLl~~-~~~f~~l~ 1517 (1522)
T TIGR00957 1459 LIQSTIRTQFEDCTVLTI------AHRLNTIMD-YTRVIVLDKGEV--AEFGAPSNLLQQ-RGIFYSMA 1517 (1522)
T ss_pred HHHHHHHHHcCCCEEEEE------ecCHHHHHh-CCEEEEEECCEE--EEECCHHHHHhC-CCHHHHHH
Confidence 899988887678999999 999987764 7884 3444 344566777664 23444443
No 349
>PLN03140 ABC transporter G family member; Provisional
Probab=99.89 E-value=1.9e-23 Score=199.08 Aligned_cols=156 Identities=15% Similarity=0.156 Sum_probs=115.3
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccC---CCCeEEeceEchhhccCCceeeEEEeec--CCcccccccccCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKAS---NPSLKVQGFYTGEIRQGGQRVGFEVVTL--DDRRAPLASINASS 75 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~---~G~i~~~g~~~~~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~ 75 (193)
+.|++|++++|+||||||||||||+|+|.++|+ +|+|.++|.+..+.. .++.++|++|+. .+..++.+++.+..
T Consensus 186 ~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~-~~~~i~yv~Q~d~~~~~lTV~EtL~f~a 264 (1470)
T PLN03140 186 GIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV-PRKTSAYISQNDVHVGVMTVKETLDFSA 264 (1470)
T ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhc-ccceeEEecccccCCCcCcHHHHHHHHH
Confidence 468999999999999999999999999999998 999999998874332 256799999975 34556666654422
Q ss_pred CCC--C-------CCCcccce------------------------eeehhhhhhhccccc-------------c------
Q 029421 76 PES--Y-------RWPTVGRY------------------------KVDVASFEAIALPEL-------------Q------ 103 (193)
Q Consensus 76 ~~~--~-------~~~~~~~~------------------------~~~~~~l~~~~l~~~-------------~------ 103 (193)
... . .....++. ......++.+|+.+. +
T Consensus 265 ~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkR 344 (1470)
T PLN03140 265 RCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKR 344 (1470)
T ss_pred HhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCccccee
Confidence 100 0 00000000 012345666666531 1
Q ss_pred ------cCCCCCEEEEecC-CCccccccchHHHHHHHHhC--CCcEEEEecCCCCCCCh-hHHHHHhcCC
Q 029421 104 ------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILES--NIPVLASIPAPKSGRDI-PAVARLRNHP 163 (193)
Q Consensus 104 ------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~--g~tvl~~~~~~~~tHd~-~~~~~~~d~~ 163 (193)
++.+|+++++||| +|||+.++..+.+.++.+++ |.|+|++ +|+. +++..++|++
T Consensus 345 Vsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis------~Hqp~~~i~~lfD~v 408 (1470)
T PLN03140 345 VTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMS------LLQPAPETFDLFDDI 408 (1470)
T ss_pred eeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEE------ecCCCHHHHHHhheE
Confidence 7899999999999 69999999999999998853 8999999 8885 5788999983
No 350
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.89 E-value=7.7e-24 Score=183.81 Aligned_cols=146 Identities=18% Similarity=0.239 Sum_probs=101.1
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecCC--cccccccccCCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDD--RRAPLASINASSPES 78 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~--~~~~~~~~~~~~~~~ 78 (193)
|++.+|+.+||+|+||||||||||+|+|.+.|++|+|...+ ..+++|++|++.. ..++++.+.......
T Consensus 24 l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~---------~~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~ 94 (530)
T COG0488 24 LTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPK---------GLRVGYLSQEPPLDPEKTVLDYVIEGFGEL 94 (530)
T ss_pred ceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecC---------CceEEEeCCCCCcCCCccHHHHHHhhhHHH
Confidence 57899999999999999999999999999999999997643 3578999998732 223322211111000
Q ss_pred CC-----------------------------CCcccceeeehhhhhhhcccc-------cc------------cCCCCCE
Q 029421 79 YR-----------------------------WPTVGRYKVDVASFEAIALPE-------LQ------------VGADTDL 110 (193)
Q Consensus 79 ~~-----------------------------~~~~~~~~~~~~~l~~~~l~~-------~~------------l~~~p~l 110 (193)
.. ...-.....+..++..+++.. ++ |+.+|++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~LSGG~r~Rv~LA~aL~~~pDl 174 (530)
T COG0488 95 RELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDL 174 (530)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhcCHHHHHHHHHHHHHhcCCCE
Confidence 00 000000011223333344432 11 8899999
Q ss_pred EEEecC-CCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 111 FVIDEV-GKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 111 lllDEp-~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
|||||| +.||..+...+.+.++... | |||+| |||-.++.++|+++
T Consensus 175 LLLDEPTNHLD~~~i~WLe~~L~~~~-g-tviiV------SHDR~FLd~V~t~I 220 (530)
T COG0488 175 LLLDEPTNHLDLESIEWLEDYLKRYP-G-TVIVV------SHDRYFLDNVATHI 220 (530)
T ss_pred EEEcCCCcccCHHHHHHHHHHHHhCC-C-cEEEE------eCCHHHHHHHhhhe
Confidence 999999 5999999887777777543 5 99999 99999999999984
No 351
>PTZ00243 ABC transporter; Provisional
Probab=99.89 E-value=1.5e-23 Score=201.27 Aligned_cols=163 Identities=14% Similarity=0.146 Sum_probs=118.4
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh--hccCCceeeEEEeecCCc-ccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE--IRQGGQRVGFEVVTLDDR-RAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~--~~~~~~~ig~~~q~~~~~-~~~~~~~~~~~~~ 77 (193)
|+|++||.+||+|++|||||||+++|+|+++|++|+|.+||.++.. ....++.++|+||++..+ .+..+|+.....
T Consensus 1331 f~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~- 1409 (1560)
T PTZ00243 1331 FRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLE- 1409 (1560)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccC-
Confidence 6799999999999999999999999999999999999999999853 345578899999998422 355566533110
Q ss_pred CCCCCcccceeeehhhhhhhcccc-------------------cc------------cCCC-CCEEEEecC-CCcccccc
Q 029421 78 SYRWPTVGRYKVDVASFEAIALPE-------------------LQ------------VGAD-TDLFVIDEV-GKMELFSS 124 (193)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~l~~-------------------~~------------l~~~-p~llllDEp-~~LD~~~~ 124 (193)
.. .+...++++..++.+ ++ ++.+ |++|||||| +++|+.+.
T Consensus 1410 ---~s----deeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te 1482 (1560)
T PTZ00243 1410 ---AS----SAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALD 1482 (1560)
T ss_pred ---CC----HHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHH
Confidence 00 011112222222211 11 6674 899999999 69999999
Q ss_pred chHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHHH
Q 029421 125 SFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLKD 180 (193)
Q Consensus 125 ~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~~ 180 (193)
..+.+.++...+++|||++ +|+++.+. .||++ +|.+ +..++.++|.+
T Consensus 1483 ~~Iq~~L~~~~~~~TvI~I------AHRl~ti~-~~DrIlVLd~G~V--vE~Gt~~eLl~ 1533 (1560)
T PTZ00243 1483 RQIQATVMSAFSAYTVITI------AHRLHTVA-QYDKIIVMDHGAV--AEMGSPRELVM 1533 (1560)
T ss_pred HHHHHHHHHHCCCCEEEEE------eccHHHHH-hCCEEEEEECCEE--EEECCHHHHHh
Confidence 9999999887668999999 99998775 58884 2333 34456666654
No 352
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.89 E-value=3.7e-23 Score=153.75 Aligned_cols=156 Identities=15% Similarity=0.101 Sum_probs=107.0
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceE-----chhhc------cCCceeeEEEeecCCc--ccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFY-----TGEIR------QGGQRVGFEVVTLDDR--RAP 67 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~-----~~~~~------~~~~~ig~~~q~~~~~--~~~ 67 (193)
|++.+||+.+|+|+||||||||++||++-+.|++|+|.+.-.+ +.... ..+..-||+.|+|... +.+
T Consensus 27 F~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm~V 106 (258)
T COG4107 27 FDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQV 106 (258)
T ss_pred eeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHHHhhhccceeecCccccceeee
Confidence 6789999999999999999999999999999999999885432 11111 1234568999987321 111
Q ss_pred --cccccCCCCCCCCCCcccceeeehhhhhhhccccc---------------------ccCCCCCEEEEecC-CCccccc
Q 029421 68 --LASINASSPESYRWPTVGRYKVDVASFEAIALPEL---------------------QVGADTDLFVIDEV-GKMELFS 123 (193)
Q Consensus 68 --~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---------------------~l~~~p~llllDEp-~~LD~~~ 123 (193)
-.|+.........+.--.......++++++.+... -+...|+++++||| +|||...
T Consensus 107 SAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSV 186 (258)
T COG4107 107 SAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSV 186 (258)
T ss_pred ccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhh
Confidence 11211111000000000001223345555443311 18899999999999 6999999
Q ss_pred cchHHHHHHHHh-C-CCcEEEEecCCCCCCChhHHHHHhcC
Q 029421 124 SSFFPAVLRILE-S-NIPVLASIPAPKSGRDIPAVARLRNH 162 (193)
Q Consensus 124 ~~~~~~ll~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~ 162 (193)
+..+.++++.+. + |.+++++ |||+..+.-++++
T Consensus 187 QARLLDllrgLv~~l~la~viV------THDl~VarLla~r 221 (258)
T COG4107 187 QARLLDLLRGLVRELGLAVVIV------THDLAVARLLADR 221 (258)
T ss_pred HHHHHHHHHHHHHhcCceEEEE------echhHHHHHhhhc
Confidence 999999999875 5 9999999 9999988888988
No 353
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.89 E-value=5.1e-23 Score=159.07 Aligned_cols=151 Identities=16% Similarity=0.153 Sum_probs=94.8
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCC---------CeEEeceEchhhccCCceeeEEEeecCCcccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNP---------SLKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPLASI 71 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G---------~i~~~g~~~~~~~~~~~~ig~~~q~~~~~~~~~~~~ 71 (193)
|++.+| +++|+||||||||||+++|+|++++..| ++.+.|.+... ....++++|+||++..+.......
T Consensus 18 l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~vfq~~~~~~~~~~~~ 95 (197)
T cd03278 18 IPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRK-PANFAEVTLTFDNSDGRYSIISQG 95 (197)
T ss_pred eecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCC-CCceEEEEEEEEcCCCceeEEehh
Confidence 467889 9999999999999999999999876633 45555554422 223468999999874331110000
Q ss_pred cCCCCCCCCCCc-ccc--eeeehhhhhhhccccccc----CCCCCEEEEecC-CCccccccchHHHHHHHHhCCCcEEEE
Q 029421 72 NASSPESYRWPT-VGR--YKVDVASFEAIALPELQV----GADTDLFVIDEV-GKMELFSSSFFPAVLRILESNIPVLAS 143 (193)
Q Consensus 72 ~~~~~~~~~~~~-~~~--~~~~~~~l~~~~l~~~~l----~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~g~tvl~~ 143 (193)
.. ........ ... .....-...++.+... + ..+|+++++||| ++||+..+..+.++++.+.++.|||++
T Consensus 96 ~~--~~~l~~~~~~~~~~~~LS~G~kqrl~la~~-l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~~~tiIii 172 (197)
T cd03278 96 DV--SEIIEAPGKKVQRLSLLSGGEKALTALALL-FAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSKETQFIVI 172 (197)
T ss_pred hH--HHHHhCCCccccchhhcCHHHHHHHHHHHH-HHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhccCCEEEEE
Confidence 00 00000000 000 0000000111111111 2 256799999999 699999999999999988668899999
Q ss_pred ecCCCCCCChhHHHHHhcCC
Q 029421 144 IPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 144 ~~~~~~tHd~~~~~~~~d~~ 163 (193)
||+++.+ .+||++
T Consensus 173 ------tH~~~~~-~~~d~v 185 (197)
T cd03278 173 ------THRKGTM-EAADRL 185 (197)
T ss_pred ------ECCHHHH-hhcceE
Confidence 9998865 578874
No 354
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.88 E-value=7.4e-23 Score=196.22 Aligned_cols=162 Identities=15% Similarity=0.210 Sum_probs=117.0
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCCc-ccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDDR-RAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~~-~~~~~~~~~~~~~ 77 (193)
|+|++|+.+||+|+||||||||+++|+|+++ ++|+|.+||.++... ...+++++|+||++..+ .+..+|+.....
T Consensus 1240 ~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~- 1317 (1490)
T TIGR01271 1240 FSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQ- 1317 (1490)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccC-
Confidence 5799999999999999999999999999997 789999999998543 34578899999998422 355556532110
Q ss_pred CCCCCcccceeeehhhhhhhccc-------------------ccc------------cCCCCCEEEEecC-CCccccccc
Q 029421 78 SYRWPTVGRYKVDVASFEAIALP-------------------ELQ------------VGADTDLFVIDEV-GKMELFSSS 125 (193)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~l~-------------------~~~------------l~~~p~llllDEp-~~LD~~~~~ 125 (193)
.. .....++++.+++. .++ ++.+|++|||||| +++|+.+..
T Consensus 1318 ---~t----deei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~ 1390 (1490)
T TIGR01271 1318 ---WS----DEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQ 1390 (1490)
T ss_pred ---CC----HHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHH
Confidence 00 01111222222211 011 8899999999999 699999998
Q ss_pred hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHHH
Q 029421 126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLKD 180 (193)
Q Consensus 126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~~ 180 (193)
.+.+.++...+++|||++ +|+++.+.. ||++ +|.++ ..+++++|.+
T Consensus 1391 ~I~~~L~~~~~~~TvI~I------aHRl~ti~~-~DrIlvL~~G~iv--E~g~p~~Ll~ 1440 (1490)
T TIGR01271 1391 IIRKTLKQSFSNCTVILS------EHRVEALLE-CQQFLVIEGSSVK--QYDSIQKLLN 1440 (1490)
T ss_pred HHHHHHHHHcCCCEEEEE------ecCHHHHHh-CCEEEEEECCEEE--EeCCHHHHHc
Confidence 899999887678999999 999987764 8884 34443 3345566654
No 355
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.87 E-value=4e-23 Score=152.84 Aligned_cols=156 Identities=16% Similarity=0.231 Sum_probs=112.4
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEc---------hhhc-cCCceeeEEEeec--CCccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYT---------GEIR-QGGQRVGFEVVTL--DDRRAPL 68 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~---------~~~~-~~~~~ig~~~q~~--~~~~~~~ 68 (193)
|+++.||+++|-||||||||||||++-|-+.|++|+|++....- ++.- -.++.+||+.|.. .+....+
T Consensus 32 lsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aL 111 (235)
T COG4778 32 LSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSAL 111 (235)
T ss_pred EEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHHhccCcchH
Confidence 67899999999999999999999999999999999999854331 1111 1246789998854 3333333
Q ss_pred ccccCCCCCCCCCCcccceeeehhhhhhhcccccc---------------------cCCCCCEEEEecC-CCccccccch
Q 029421 69 ASINASSPESYRWPTVGRYKVDVASFEAIALPELQ---------------------VGADTDLFVIDEV-GKMELFSSSF 126 (193)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---------------------l~~~p~llllDEp-~~LD~~~~~~ 126 (193)
+....+.. ...++...........+.++++.+.. ++.+-++|+|||| ++||..++..
T Consensus 112 dVvaePll-~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~v 190 (235)
T COG4778 112 DVVAEPLL-ARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAV 190 (235)
T ss_pred HHHHhHHH-HcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEEecCCcccccccchHH
Confidence 32221111 11222222333445566666655321 7788999999999 5999999999
Q ss_pred HHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 127 FPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 127 ~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
+.+++...+. |.+++-+ -||-+.-+.+|||.
T Consensus 191 Vveli~e~Ka~GaAlvGI------FHDeevre~vadR~ 222 (235)
T COG4778 191 VVELIREAKARGAALVGI------FHDEEVREAVADRL 222 (235)
T ss_pred HHHHHHHHHhcCceEEEe------eccHHHHHHHhhhe
Confidence 9999999877 9999999 89977778889983
No 356
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.86 E-value=5.1e-22 Score=172.47 Aligned_cols=138 Identities=19% Similarity=0.269 Sum_probs=98.2
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecCC---cccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDD---RRAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~---~~~~~~~~~~~~~~ 77 (193)
|.|.+|+.++|+||||+|||||||+|+|.+.|.+|+|.+.- .-++||..|+... ..++++++.-....
T Consensus 343 ~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~---------~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~ 413 (530)
T COG0488 343 FRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGE---------TVKIGYFDQHRDELDPDKTVLEELSEGFPD 413 (530)
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCC---------ceEEEEEEehhhhcCccCcHHHHHHhhCcc
Confidence 57899999999999999999999999999999999987632 3468999997622 12233322111100
Q ss_pred CCCCCcccceeeehhhhhhhcccc---------cc------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh
Q 029421 78 SYRWPTVGRYKVDVASFEAIALPE---------LQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE 135 (193)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~l~~---------~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~ 135 (193)
. ........+.++++.. ++ ++.+|.+|||||| +.||..+...+.+.+..+
T Consensus 414 ~-------~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f- 485 (530)
T COG0488 414 G-------DEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF- 485 (530)
T ss_pred c-------cHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC-
Confidence 0 0112223344444321 11 6789999999999 599999877666666555
Q ss_pred CCCcEEEEecCCCCCCChhHHHHHhcC
Q 029421 136 SNIPVLASIPAPKSGRDIPAVARLRNH 162 (193)
Q Consensus 136 ~g~tvl~~~~~~~~tHd~~~~~~~~d~ 162 (193)
.-|||+| |||..++.++|++
T Consensus 486 -~Gtvl~V------SHDr~Fl~~va~~ 505 (530)
T COG0488 486 -EGTVLLV------SHDRYFLDRVATR 505 (530)
T ss_pred -CCeEEEE------eCCHHHHHhhcce
Confidence 5699999 9999999999987
No 357
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.86 E-value=4e-22 Score=182.79 Aligned_cols=166 Identities=13% Similarity=0.148 Sum_probs=124.5
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh--hccCCceeeEEEeecCCc-ccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE--IRQGGQRVGFEVVTLDDR-RAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~--~~~~~~~ig~~~q~~~~~-~~~~~~~~~~~~~ 77 (193)
|+|++|+.+||+|||||||||.+.+|-..+.|++|.|.+||.++.. .+..|+++|.|.|+|..+ .+..+|+.+....
T Consensus 1011 l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~ 1090 (1228)
T KOG0055|consen 1011 LSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEE 1090 (1228)
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCC
Confidence 5789999999999999999999999999999999999999999853 445678999999998433 4566776665211
Q ss_pred CCCCCcccceeeehhhhhhhcccc-------------------------------cccCCCCCEEEEecC-CCccccccc
Q 029421 78 SYRWPTVGRYKVDVASFEAIALPE-------------------------------LQVGADTDLFVIDEV-GKMELFSSS 125 (193)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~l~~-------------------------------~~l~~~p~llllDEp-~~LD~~~~~ 125 (193)
. ......++++..+..+ .+++.||++|||||. ++||.++.+
T Consensus 1091 -v------s~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSEr 1163 (1228)
T KOG0055|consen 1091 -V------SEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESER 1163 (1228)
T ss_pred -C------CHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHH
Confidence 0 0111112221111100 018899999999999 699999999
Q ss_pred hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCCCcE--EEEeCCCChhHHHH
Q 029421 126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHPGAT--IFTLSPGNRDSLKD 180 (193)
Q Consensus 126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~~~~--~~~~~~~~~~~l~~ 180 (193)
.+++.++....|.|+|++ .|.+..+. -||.+.+. -.+++.++.++|.+
T Consensus 1164 vVQeALd~a~~gRT~IvI------AHRLSTIq-naD~I~Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1164 VVQEALDRAMEGRTTIVI------AHRLSTIQ-NADVIAVLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred HHHHHHHHhhcCCcEEEE------ecchhhhh-cCCEEEEEECCEEEecccHHHHHh
Confidence 999999999889999999 99988775 47874321 13566778887776
No 358
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.86 E-value=1.8e-22 Score=166.13 Aligned_cols=161 Identities=15% Similarity=0.180 Sum_probs=108.1
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEch--hhccCCceeeEEEeecC--CcccccccccCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTG--EIRQGGQRVGFEVVTLD--DRRAPLASINASSP 76 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~--~~~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~ 76 (193)
++|++||++.|+|.||||||||++++.|+++|++|+|.+||+++. ...+.|+-++-+|.+.. +..-..++ ..
T Consensus 344 l~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~~e~--~a-- 419 (546)
T COG4615 344 LTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEG--KA-- 419 (546)
T ss_pred eEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhCCcc--CC--
Confidence 478999999999999999999999999999999999999999874 23344444555554431 11100010 00
Q ss_pred CCCCCCcccceeeehhhhhhhcccc-------------------------cccCCCCCEEEEecC-CCccccccchHH-H
Q 029421 77 ESYRWPTVGRYKVDVASFEAIALPE-------------------------LQVGADTDLFVIDEV-GKMELFSSSFFP-A 129 (193)
Q Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~l~~-------------------------~~l~~~p~llllDEp-~~LD~~~~~~~~-~ 129 (193)
..+.+..+++++.+.+ ..++.+-+++++||= +--||.-|..++ .
T Consensus 420 ---------s~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~ 490 (546)
T COG4615 420 ---------SPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQV 490 (546)
T ss_pred ---------ChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHH
Confidence 0011112222222111 116789999999999 699999987655 5
Q ss_pred HHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcC----CCcEEEEeCCCChhHHHHH
Q 029421 130 VLRILES-NIPVLASIPAPKSGRDIPAVARLRNH----PGATIFTLSPGNRDSLKDN 181 (193)
Q Consensus 130 ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~----~~~~~~~~~~~~~~~l~~~ 181 (193)
++-.+++ |+||+.+ |||- ---..||| .+|++...++.++.+....
T Consensus 491 lLp~LK~qGKTI~aI------sHDd-~YF~~ADrll~~~~G~~~e~tge~~~etA~~ 540 (546)
T COG4615 491 LLPLLKEQGKTIFAI------SHDD-HYFIHADRLLEMRNGQLSELTGEERDETARD 540 (546)
T ss_pred HhHHHHHhCCeEEEE------ecCc-hhhhhHHHHHHHhcCceeeccccccchhhhh
Confidence 5667777 9999999 8873 33345666 5788888877776654443
No 359
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.86 E-value=5.4e-22 Score=147.58 Aligned_cols=148 Identities=18% Similarity=0.238 Sum_probs=99.7
Q ss_pred cccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh--hccCCceeeEEEeecC--CcccccccccCCCCC
Q 029421 2 AAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE--IRQGGQRVGFEVVTLD--DRRAPLASINASSPE 77 (193)
Q Consensus 2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~--~~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~~ 77 (193)
++..||++-++||||||||||+-.++|+++- +|+|.++|.+... .....+.-+|..|+.. ..+.++..+.+..+.
T Consensus 21 qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~-sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~L~qP~ 99 (248)
T COG4138 21 EVRAGEILHLVGPNGAGKSTLLARMAGMTSG-SGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTLHQPD 99 (248)
T ss_pred ccccceEEEEECCCCccHHHHHHHHhCCCCC-CceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhhhhcCch
Confidence 5788999999999999999999999999654 7999999998732 2222334456665432 122333322221111
Q ss_pred CCCCCcccceeeehhhhhhhcccccc---------------------------cCCCCCEEEEecC-CCccccccchHHH
Q 029421 78 SYRWPTVGRYKVDVASFEAIALPELQ---------------------------VGADTDLFVIDEV-GKMELFSSSFFPA 129 (193)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~l~~~~---------------------------l~~~p~llllDEp-~~LD~~~~~~~~~ 129 (193)
........+....+++.+.. +-...+++++||| ++||...+..+..
T Consensus 100 ------~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdr 173 (248)
T COG4138 100 ------KTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDR 173 (248)
T ss_pred ------HHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHH
Confidence 00001111122222222110 3345579999999 7999998888999
Q ss_pred HHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcC
Q 029421 130 VLRILES-NIPVLASIPAPKSGRDIPAVARLRNH 162 (193)
Q Consensus 130 ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~ 162 (193)
++..++. |.+|||+ +||++--.+.||+
T Consensus 174 ll~~~c~~G~~vims------~HDLNhTLrhA~~ 201 (248)
T COG4138 174 LLSALCQQGLAIVMS------SHDLNHTLRHAHR 201 (248)
T ss_pred HHHHHHhCCcEEEEe------ccchhhHHHHHHH
Confidence 9999887 9999999 9999988888887
No 360
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.85 E-value=3.1e-22 Score=183.85 Aligned_cols=145 Identities=18% Similarity=0.216 Sum_probs=109.9
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHhhcc--cCCCCeEEeceEchhhccCCceeeEEEeec--CCcccccccccCCCCC-
Q 029421 3 AGAGKCFLVTGPPGVGKTTLIMRVLESLK--ASNPSLKVQGFYTGEIRQGGQRVGFEVVTL--DDRRAPLASINASSPE- 77 (193)
Q Consensus 3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~--~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~~- 77 (193)
+.+|..+||+|+|||||||||++|+|-.. -.+|+|.++|.+..+ ...++.+||+-|+. .+..++.+.+.+....
T Consensus 814 ~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q-~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LR 892 (1391)
T KOG0065|consen 814 FKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ-ETFARVSGYVEQQDIHSPELTVRESLRFSAALR 892 (1391)
T ss_pred ecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch-hhhccccceeecccccCcccchHHHHHHHHHHc
Confidence 57999999999999999999999999753 246899999998764 34577899999875 3456666665543311
Q ss_pred -CCCCCcccceeeehhhhhhhcccccc------------------------cCCCC-CEEEEecC-CCccccccchHHHH
Q 029421 78 -SYRWPTVGRYKVDVASFEAIALPELQ------------------------VGADT-DLFVIDEV-GKMELFSSSFFPAV 130 (193)
Q Consensus 78 -~~~~~~~~~~~~~~~~l~~~~l~~~~------------------------l~~~p-~llllDEp-~~LD~~~~~~~~~l 130 (193)
....+..++.+.+.+.++.++|.+++ |+.+| .+|+|||| +|||..+...+..+
T Consensus 893 lp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~ 972 (1391)
T KOG0065|consen 893 LPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRF 972 (1391)
T ss_pred CCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHH
Confidence 11112223334455666666665432 88999 89999999 69999999999999
Q ss_pred HHHHhC-CCcEEEEecCCC
Q 029421 131 LRILES-NIPVLASIPAPK 148 (193)
Q Consensus 131 l~~l~~-g~tvl~~~~~~~ 148 (193)
++.++. |.|||.+||.|+
T Consensus 973 lrkla~tGqtIlCTIHQPS 991 (1391)
T KOG0065|consen 973 LRKLADTGQTILCTIHQPS 991 (1391)
T ss_pred HHHHHhcCCeEEEEecCCc
Confidence 999987 999999988775
No 361
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.85 E-value=8.2e-22 Score=189.07 Aligned_cols=145 Identities=19% Similarity=0.164 Sum_probs=101.2
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecCC-cccccccccCCCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDD-RRAPLASINASSPESY 79 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~~~ 79 (193)
|+|++|++++|+||||||||||+++|+|+++|++|+|.++| .++|++|++.. ..+..+|+.+......
T Consensus 447 l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g-----------~iayv~Q~~~l~~~Ti~eNI~~g~~~~~ 515 (1490)
T TIGR01271 447 FKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG-----------RISFSPQTSWIMPGTIKDNIIFGLSYDE 515 (1490)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-----------EEEEEeCCCccCCccHHHHHHhccccch
Confidence 57899999999999999999999999999999999999987 48999998721 2366677654321100
Q ss_pred CCCccccee-eehhhhhhhcc----------cccc------------cCCCCCEEEEecC-CCccccccchHHH-HHHHH
Q 029421 80 RWPTVGRYK-VDVASFEAIAL----------PELQ------------VGADTDLFVIDEV-GKMELFSSSFFPA-VLRIL 134 (193)
Q Consensus 80 ~~~~~~~~~-~~~~~l~~~~l----------~~~~------------l~~~p~llllDEp-~~LD~~~~~~~~~-ll~~l 134 (193)
.+....... ...+.++.+.. ..++ +..+|+++||||| ++||+..+..+.+ ++..+
T Consensus 516 ~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~ 595 (1490)
T TIGR01271 516 YRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKL 595 (1490)
T ss_pred HHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 000000000 00111111110 0111 7799999999999 7999999877765 55665
Q ss_pred hCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 135 ESNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 135 ~~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+|+|+|++ ||++..+. .||++
T Consensus 596 ~~~~tvilv------tH~~~~~~-~ad~i 617 (1490)
T TIGR01271 596 MSNKTRILV------TSKLEHLK-KADKI 617 (1490)
T ss_pred hcCCeEEEE------eCChHHHH-hCCEE
Confidence 568999999 99998875 48873
No 362
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.85 E-value=1.4e-22 Score=147.41 Aligned_cols=61 Identities=23% Similarity=0.397 Sum_probs=54.1
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh--hccCCceeeEEEeec
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE--IRQGGQRVGFEVVTL 61 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~--~~~~~~~ig~~~q~~ 61 (193)
|+|++|++++|+|+||||||||+++|+|..+|++|+|.++|.++.. ....++.++|++|+.
T Consensus 6 ~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~ 68 (137)
T PF00005_consen 6 LEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDP 68 (137)
T ss_dssp EEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSH
T ss_pred EEEcCCCEEEEEccCCCccccceeeeccccccccccccccccccccccccccccccccccccc
Confidence 5789999999999999999999999999999999999999999854 334467899999974
No 363
>PLN03073 ABC transporter F family; Provisional
Probab=99.85 E-value=1.1e-21 Score=176.45 Aligned_cols=153 Identities=9% Similarity=0.061 Sum_probs=96.9
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhc---ccCCCCeEEeceEch-----h-------h----ccCCceeeEEEeec
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESL---KASNPSLKVQGFYTG-----E-------I----RQGGQRVGFEVVTL 61 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~---~~~~G~i~~~g~~~~-----~-------~----~~~~~~ig~~~q~~ 61 (193)
|+|.+|+++||+||||||||||||+|+|.. .|++|+|.+.++... . . ....+.++|++|.+
T Consensus 198 l~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~ 277 (718)
T PLN03073 198 VTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCVLNTDIERTQLLEEEAQLVAQQR 277 (718)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 679999999999999999999999999864 578899976554320 0 0 00112345555543
Q ss_pred CCc-ccccccccCCCCCCCCCCcc-------------------cceeeehhhhhhhccc---------ccc---------
Q 029421 62 DDR-RAPLASINASSPESYRWPTV-------------------GRYKVDVASFEAIALP---------ELQ--------- 103 (193)
Q Consensus 62 ~~~-~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~l~~~~l~---------~~~--------- 103 (193)
... .....+..... ....+.. ....+..+.+..+++. .++
T Consensus 278 ~l~~~~~~~~~~~~~--~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~~~~~~~~~LSgG~k~rv~L 355 (718)
T PLN03073 278 ELEFETETGKGKGAN--KDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEMQVKATKTFSGGWRMRIAL 355 (718)
T ss_pred Hhhhccccccccccc--ccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCChHHHhCchhhCCHHHHHHHHH
Confidence 110 01111100000 0000000 0011222344444542 111
Q ss_pred ---cCCCCCEEEEecC-CCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 104 ---VGADTDLFVIDEV-GKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 104 ---l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
++.+|++|||||| ++||+.++..+.++++.+ +.|||++ |||..++..+||++
T Consensus 356 A~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~~tviiv------sHd~~~l~~~~d~i 411 (718)
T PLN03073 356 ARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW--PKTFIVV------SHAREFLNTVVTDI 411 (718)
T ss_pred HHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc--CCEEEEE------ECCHHHHHHhCCEE
Confidence 7899999999999 699999988888888765 6899999 99999999999983
No 364
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.84 E-value=5.2e-21 Score=183.98 Aligned_cols=139 Identities=14% Similarity=0.185 Sum_probs=99.4
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecC-CcccccccccCCCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD-DRRAPLASINASSPESY 79 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~-~~~~~~~~~~~~~~~~~ 79 (193)
|+|++|++++|+||||||||||+++|+|+++|++|+|.++| .++|++|++. ...+..+|+.+....
T Consensus 659 l~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-----------~i~yv~Q~~~l~~~Ti~eNI~~g~~~-- 725 (1522)
T TIGR00957 659 FSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG-----------SVAYVPQQAWIQNDSLRENILFGKAL-- 725 (1522)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC-----------EEEEEcCCccccCCcHHHHhhcCCcc--
Confidence 57899999999999999999999999999999999999876 5899999872 234566665543211
Q ss_pred CCCcccceeeeh------hhhhhh--cc--------ccc------------ccCCCCCEEEEecC-CCccccccchHHHH
Q 029421 80 RWPTVGRYKVDV------ASFEAI--AL--------PEL------------QVGADTDLFVIDEV-GKMELFSSSFFPAV 130 (193)
Q Consensus 80 ~~~~~~~~~~~~------~~l~~~--~l--------~~~------------~l~~~p~llllDEp-~~LD~~~~~~~~~l 130 (193)
. ...+.... +.++.+ |. ..+ ++..+|++++|||| ++||+.....+.+.
T Consensus 726 --~-~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~ 802 (1522)
T TIGR00957 726 --N-EKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEH 802 (1522)
T ss_pred --C-HHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHH
Confidence 0 00111000 111111 00 011 17899999999999 79999998777666
Q ss_pred HHH---HhCCCcEEEEecCCCCCCChhHHHHHhcC
Q 029421 131 LRI---LESNIPVLASIPAPKSGRDIPAVARLRNH 162 (193)
Q Consensus 131 l~~---l~~g~tvl~~~~~~~~tHd~~~~~~~~d~ 162 (193)
+.. +.+|+|+|++ ||+++.+.. ||+
T Consensus 803 l~~~~~~~~~~tvIlv------TH~~~~l~~-~D~ 830 (1522)
T TIGR00957 803 VIGPEGVLKNKTRILV------THGISYLPQ-VDV 830 (1522)
T ss_pred HhhhhhhhcCCEEEEE------eCChhhhhh-CCE
Confidence 643 3348999999 999987765 887
No 365
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.83 E-value=1.7e-20 Score=150.05 Aligned_cols=151 Identities=12% Similarity=0.111 Sum_probs=98.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhhcccC-CCCeEEece-Echhh----ccCCceeeEEEeecCC-----------ccccc
Q 029421 6 GKCFLVTGPPGVGKTTLIMRVLESLKAS-NPSLKVQGF-YTGEI----RQGGQRVGFEVVTLDD-----------RRAPL 68 (193)
Q Consensus 6 Ge~~~l~GpnGsGKSTLl~~i~gl~~~~-~G~i~~~g~-~~~~~----~~~~~~ig~~~q~~~~-----------~~~~~ 68 (193)
..+++|+||||||||||+++|++++.++ .|++++.+. +.... .....++++++|++.. ..++.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 4589999999999999999999999886 457887765 32111 1223578899997521 12222
Q ss_pred ccccCCCCCCCCCC-cccceeeehhhhhhhccc--------------------c--------cc------------cC--
Q 029421 69 ASINASSPESYRWP-TVGRYKVDVASFEAIALP--------------------E--------LQ------------VG-- 105 (193)
Q Consensus 69 ~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~--------------------~--------~~------------l~-- 105 (193)
.++........... .........+.++.+++. . ++ ++
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~ 184 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALL 184 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHh
Confidence 22222111000000 111112334556666653 0 11 32
Q ss_pred --CCCCEEEEecC-CCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 106 --ADTDLFVIDEV-GKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 106 --~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+|+++++||| ++||+..+..+.++++.+.+|.++|++ ||+ .++.+.||++
T Consensus 185 ~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~i------SH~-~~~~~~~d~v 238 (251)
T cd03273 185 LFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVV------SLK-EGMFNNANVL 238 (251)
T ss_pred hccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEE------ECC-HHHHHhCCEE
Confidence 57899999999 699999999999999888668899999 999 5666679884
No 366
>PTZ00243 ABC transporter; Provisional
Probab=99.82 E-value=7.9e-21 Score=182.74 Aligned_cols=145 Identities=15% Similarity=0.144 Sum_probs=97.1
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecC-CcccccccccCCCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD-DRRAPLASINASSPESY 79 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~-~~~~~~~~~~~~~~~~~ 79 (193)
|+|++|++++|+||||||||||+++|+|+++|++|+|.+. .+++|++|++. ...+..+|+.+......
T Consensus 681 l~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~-----------~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~ 749 (1560)
T PTZ00243 681 VSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE-----------RSIAYVPQQAWIMNATVRGNILFFDEEDA 749 (1560)
T ss_pred EEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC-----------CeEEEEeCCCccCCCcHHHHHHcCChhhH
Confidence 5789999999999999999999999999999999999752 46999999872 22355666544221000
Q ss_pred CCCcc-cceeeehhhhhhh--ccc--------ccc------------cCCCCCEEEEecC-CCccccccchHH-HHHHHH
Q 029421 80 RWPTV-GRYKVDVASFEAI--ALP--------ELQ------------VGADTDLFVIDEV-GKMELFSSSFFP-AVLRIL 134 (193)
Q Consensus 80 ~~~~~-~~~~~~~~~l~~~--~l~--------~~~------------l~~~p~llllDEp-~~LD~~~~~~~~-~ll~~l 134 (193)
..... -......+.++.+ |+. .++ +..+|+++||||| ++||+.....+. .++...
T Consensus 750 ~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~ 829 (1560)
T PTZ00243 750 ARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGA 829 (1560)
T ss_pred HHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHh
Confidence 00000 0000001112222 111 111 7899999999999 799998865544 444433
Q ss_pred hCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 135 ESNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 135 ~~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+|+|+|++ ||+++.+ ..||++
T Consensus 830 ~~~~TvIlv------TH~~~~~-~~ad~i 851 (1560)
T PTZ00243 830 LAGKTRVLA------THQVHVV-PRADYV 851 (1560)
T ss_pred hCCCEEEEE------eCCHHHH-HhCCEE
Confidence 358999999 9999877 468883
No 367
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.82 E-value=9.1e-21 Score=159.74 Aligned_cols=174 Identities=13% Similarity=0.194 Sum_probs=117.6
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCC-cccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDD-RRAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~ 77 (193)
|++.+|+.++|+||||+||||+||++......++|.|.+||+++... ...+..||.+||+... ..+.+.|+.+....
T Consensus 559 F~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~ 638 (790)
T KOG0056|consen 559 FTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPS 638 (790)
T ss_pred EEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCC
Confidence 67899999999999999999999999999999999999999998543 3456789999998622 23445555443321
Q ss_pred CCCCCc--ccc-eeeehhhh-------hhhccccc--------------ccCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421 78 SYRWPT--VGR-YKVDVASF-------EAIALPEL--------------QVGADTDLFVIDEV-GKMELFSSSFFPAVLR 132 (193)
Q Consensus 78 ~~~~~~--~~~-~~~~~~~l-------~~~~l~~~--------------~l~~~p~llllDEp-~~LD~~~~~~~~~ll~ 132 (193)
...... ..+ .......+ .++|-..+ .++.+|.+++|||. ++||......+++.+.
T Consensus 639 AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~ 718 (790)
T KOG0056|consen 639 ASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALA 718 (790)
T ss_pred CChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHH
Confidence 110000 000 00000000 11221111 17899999999999 6999999999999999
Q ss_pred HHhCCCcEEEEecCCCCCCChhHHHHHhcCCCc--EEEEeCCCChhHHHHH
Q 029421 133 ILESNIPVLASIPAPKSGRDIPAVARLRNHPGA--TIFTLSPGNRDSLKDN 181 (193)
Q Consensus 133 ~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~~~--~~~~~~~~~~~~l~~~ 181 (193)
.++.+.|-|++ .|.+..+.. ||.+-+ ....++.++.+++.++
T Consensus 719 rlca~RTtIVv------AHRLSTivn-AD~ILvi~~G~IvErG~HeeLl~r 762 (790)
T KOG0056|consen 719 RLCANRTTIVV------AHRLSTIVN-ADLILVISNGRIVERGRHEELLKR 762 (790)
T ss_pred HHhcCCceEEE------eeeehheec-ccEEEEEeCCeEeecCcHHHHHhc
Confidence 99987777777 788776643 454210 1124566777777766
No 368
>PLN03130 ABC transporter C family member; Provisional
Probab=99.81 E-value=4.4e-20 Score=178.00 Aligned_cols=140 Identities=15% Similarity=0.210 Sum_probs=99.4
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCC-CCeEEeceEchhhccCCceeeEEEeecC-CcccccccccCCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASN-PSLKVQGFYTGEIRQGGQRVGFEVVTLD-DRRAPLASINASSPES 78 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~-G~i~~~g~~~~~~~~~~~~ig~~~q~~~-~~~~~~~~~~~~~~~~ 78 (193)
|+|++|+.++|+||+|||||||+++|+|.++|++ |+|.+ +..++|++|++. ...+..+|+.+.....
T Consensus 638 l~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l-----------~~~Iayv~Q~p~LfngTIreNI~fg~~~d 706 (1622)
T PLN03130 638 LDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI-----------RGTVAYVPQVSWIFNATVRDNILFGSPFD 706 (1622)
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE-----------cCeEEEEcCccccCCCCHHHHHhCCCccc
Confidence 5789999999999999999999999999999999 89875 347999999983 2346677766543210
Q ss_pred CCCCcccceeeeh------hhhhhh--ccc--------cc------------ccCCCCCEEEEecC-CCccccccc-hHH
Q 029421 79 YRWPTVGRYKVDV------ASFEAI--ALP--------EL------------QVGADTDLFVIDEV-GKMELFSSS-FFP 128 (193)
Q Consensus 79 ~~~~~~~~~~~~~------~~l~~~--~l~--------~~------------~l~~~p~llllDEp-~~LD~~~~~-~~~ 128 (193)
.+.+..+. +.++.+ |.. .+ ++..+|+++||||| ++||+...+ .+.
T Consensus 707 -----~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~ 781 (1622)
T PLN03130 707 -----PERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFD 781 (1622)
T ss_pred -----HHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHH
Confidence 01111110 111111 000 01 17899999999999 799998765 456
Q ss_pred HHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 129 AVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 129 ~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
++++.+.+|+|+|++ ||++..+ ..||++
T Consensus 782 ~~l~~~l~~kTvIlV------TH~l~~l-~~aD~I 809 (1622)
T PLN03130 782 KCIKDELRGKTRVLV------TNQLHFL-SQVDRI 809 (1622)
T ss_pred HHhhHHhcCCEEEEE------ECCHhHH-HhCCEE
Confidence 677665568999999 9998765 458873
No 369
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.81 E-value=1.3e-20 Score=148.49 Aligned_cols=53 Identities=23% Similarity=0.292 Sum_probs=46.2
Q ss_pred cCCCC--CEEEEecC-CCccccccchHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 104 VGADT--DLFVIDEV-GKMELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 104 l~~~p--~llllDEp-~~LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
++.+| +++|+||| ++||+..+..+.++++.+++ |.|+|++ |||++++ .+||++
T Consensus 152 l~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~i------tH~~~~~-~~~d~i 208 (226)
T cd03270 152 IGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVV------EHDEDTI-RAADHV 208 (226)
T ss_pred HHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEE------EeCHHHH-HhCCEE
Confidence 66777 69999999 69999999999999988865 9999999 9999876 588873
No 370
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.81 E-value=2.9e-20 Score=158.85 Aligned_cols=157 Identities=14% Similarity=0.162 Sum_probs=117.5
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh---hccCCceeeEEEeec-----CCccccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE---IRQGGQRVGFEVVTL-----DDRRAPLASIN 72 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~---~~~~~~~ig~~~q~~-----~~~~~~~~~~~ 72 (193)
|++.+||+++|.|--|||+|-|+++|.|..++++|+|.++|+++.. ....+..++|+|.+- ....+..+|+.
T Consensus 280 f~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~ 359 (500)
T COG1129 280 FTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENIT 359 (500)
T ss_pred eEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHhee
Confidence 6899999999999999999999999999999999999999998632 223345789998765 23345556655
Q ss_pred CCCC-CCCC--C-Ccccceeeehhhhhhhcccc---------cc------------cCCCCCEEEEecCC-Cccccccch
Q 029421 73 ASSP-ESYR--W-PTVGRYKVDVASFEAIALPE---------LQ------------VGADTDLFVIDEVG-KMELFSSSF 126 (193)
Q Consensus 73 ~~~~-~~~~--~-~~~~~~~~~~~~l~~~~l~~---------~~------------l~~~p~llllDEp~-~LD~~~~~~ 126 (193)
+... .... + ..........++.+.+.+.. ++ |..+|++||||||+ |+|..++.+
T Consensus 360 l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~e 439 (500)
T COG1129 360 LASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAE 439 (500)
T ss_pred hHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHH
Confidence 5421 1111 1 11111122333444444332 11 88999999999996 999999999
Q ss_pred HHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 127 FPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 127 ~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
++.+++.+++ |++||++ |-+++++..+|||+
T Consensus 440 Iy~li~~lA~~G~ail~i------SSElpEll~~~DRI 471 (500)
T COG1129 440 IYRLIRELAAEGKAILMI------SSELPELLGLSDRI 471 (500)
T ss_pred HHHHHHHHHHCCCEEEEE------eCChHHHHhhCCEE
Confidence 9999999987 9999999 99999999999995
No 371
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.81 E-value=2.7e-20 Score=144.62 Aligned_cols=150 Identities=15% Similarity=0.152 Sum_probs=91.6
Q ss_pred cccCCCEEEEEcCCCCcHHHHHHHHH----hhcccCCCCeEEeceEchhhccCCceeeEEEeec-CCccc------cccc
Q 029421 2 AAGAGKCFLVTGPPGVGKTTLIMRVL----ESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTL-DDRRA------PLAS 70 (193)
Q Consensus 2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~----gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~-~~~~~------~~~~ 70 (193)
++.+| +++|+||||||||||+++|. |..+|++|.+..+. ...........++++||+. ...+. .+++
T Consensus 19 ~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~-~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~~~ 96 (204)
T cd03240 19 EFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDP-KLIREGEVRAQVKLAFENANGKKYTITRSLAILEN 96 (204)
T ss_pred ecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchH-HHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHhhc
Confidence 46677 99999999999999999995 87788777665211 1111223456788888876 22222 2222
Q ss_pred ccCCCCCCCCCCcccce--eeehhhhhh------hcccccccCCCCCEEEEecC-CCccccccc-hHHHHHHHHhC--CC
Q 029421 71 INASSPESYRWPTVGRY--KVDVASFEA------IALPELQVGADTDLFVIDEV-GKMELFSSS-FFPAVLRILES--NI 138 (193)
Q Consensus 71 ~~~~~~~~~~~~~~~~~--~~~~~~l~~------~~l~~~~l~~~p~llllDEp-~~LD~~~~~-~~~~ll~~l~~--g~ 138 (193)
+.+........ ..... ..-.....+ +.+. ..++.+|+++++||| ++||+..+. .+.+++..+++ |.
T Consensus 97 ~~~~~~~~~~~-~~~~~~~~LS~G~~~~~~la~rlala-~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~ 174 (204)
T cd03240 97 VIFCHQGESNW-PLLDMRGRCSGGEKVLASLIIRLALA-ETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNF 174 (204)
T ss_pred eeeechHHHHH-HHhcCccccCccHHHHHHHHHHHHHH-HHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCC
Confidence 21110000000 00000 000000011 1111 125789999999999 699999998 99999988764 88
Q ss_pred cEEEEecCCCCCCChhHHHHHhcC
Q 029421 139 PVLASIPAPKSGRDIPAVARLRNH 162 (193)
Q Consensus 139 tvl~~~~~~~~tHd~~~~~~~~d~ 162 (193)
+||++ ||+.+.+ ..||+
T Consensus 175 ~iiii------tH~~~~~-~~~d~ 191 (204)
T cd03240 175 QLIVI------THDEELV-DAADH 191 (204)
T ss_pred EEEEE------EecHHHH-hhCCE
Confidence 99999 9997765 46775
No 372
>PLN03232 ABC transporter C family member; Provisional
Probab=99.81 E-value=5.9e-20 Score=176.54 Aligned_cols=140 Identities=15% Similarity=0.169 Sum_probs=98.1
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecC-CcccccccccCCCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD-DRRAPLASINASSPESY 79 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~-~~~~~~~~~~~~~~~~~ 79 (193)
|+|++|+.++|+||+|||||||+++|+|.++|++|.+. ..+..++|++|++. ...+..+|+.+....
T Consensus 638 l~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~----------~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~-- 705 (1495)
T PLN03232 638 LEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV----------VIRGSVAYVPQVSWIFNATVRENILFGSDF-- 705 (1495)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE----------EecCcEEEEcCccccccccHHHHhhcCCcc--
Confidence 57899999999999999999999999999999998763 12557999999983 234667776654321
Q ss_pred CCCcccceeeeh------hhhhhh--ccc--------cc------------ccCCCCCEEEEecC-CCccccccc-hHHH
Q 029421 80 RWPTVGRYKVDV------ASFEAI--ALP--------EL------------QVGADTDLFVIDEV-GKMELFSSS-FFPA 129 (193)
Q Consensus 80 ~~~~~~~~~~~~------~~l~~~--~l~--------~~------------~l~~~p~llllDEp-~~LD~~~~~-~~~~ 129 (193)
..+.+..+. +.++.+ |.. .+ ++..+|+++||||| ++||+...+ .+.+
T Consensus 706 ---~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~ 782 (1495)
T PLN03232 706 ---ESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDS 782 (1495)
T ss_pred ---CHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHH
Confidence 001111110 111111 000 01 17899999999999 799999875 4456
Q ss_pred HHHHHhCCCcEEEEecCCCCCCChhHHHHHhcC
Q 029421 130 VLRILESNIPVLASIPAPKSGRDIPAVARLRNH 162 (193)
Q Consensus 130 ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~ 162 (193)
+++...+|+|+|++ ||++..+ ..||+
T Consensus 783 ~l~~~l~~kT~Ilv------TH~~~~l-~~aD~ 808 (1495)
T PLN03232 783 CMKDELKGKTRVLV------TNQLHFL-PLMDR 808 (1495)
T ss_pred HhhhhhcCCEEEEE------ECChhhH-HhCCE
Confidence 66655568999999 9998765 46887
No 373
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.80 E-value=1.3e-19 Score=140.28 Aligned_cols=130 Identities=18% Similarity=0.165 Sum_probs=80.6
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeec--CCcccccccccCCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTL--DDRRAPLASINASSPES 78 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~~~ 78 (193)
+++..|++++|+||||||||||+|+|+|... +...|.++... .+++|.. ....+..+++.....
T Consensus 20 i~l~~g~~~~ltGpNg~GKSTllr~i~~~~~-----l~~~G~~v~a~-------~~~~q~~~l~~~~~~~d~l~~~~s-- 85 (199)
T cd03283 20 IDMEKKNGILITGSNMSGKSTFLRTIGVNVI-----LAQAGAPVCAS-------SFELPPVKIFTSIRVSDDLRDGIS-- 85 (199)
T ss_pred EEEcCCcEEEEECCCCCChHHHHHHHHHHHH-----HHHcCCEEecC-------ccCcccceEEEeccchhccccccC--
Confidence 3577899999999999999999999998753 12244433211 1233311 112222333222110
Q ss_pred CCCCcccceeeehhhhhhhcccccccCCCCCEEEEecC-CCccccccchH-HHHHHHHhC-CCcEEEEecCCCCCCChhH
Q 029421 79 YRWPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEV-GKMELFSSSFF-PAVLRILES-NIPVLASIPAPKSGRDIPA 155 (193)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp-~~LD~~~~~~~-~~ll~~l~~-g~tvl~~~~~~~~tHd~~~ 155 (193)
... .......+.++.++. .+|+++|+||| +|+|+..+..+ ..+++.+.+ |.++|++ ||+.+.
T Consensus 86 --~~~-~e~~~~~~iL~~~~~------~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~tiiiv------TH~~~~ 150 (199)
T cd03283 86 --YFY-AELRRLKEIVEKAKK------GEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTIGIIS------THDLEL 150 (199)
T ss_pred --hHH-HHHHHHHHHHHhccC------CCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCEEEEE------cCcHHH
Confidence 000 011223344444432 58999999999 69999987644 567777766 8999999 999988
Q ss_pred HHHH
Q 029421 156 VARL 159 (193)
Q Consensus 156 ~~~~ 159 (193)
+..+
T Consensus 151 ~~~~ 154 (199)
T cd03283 151 ADLL 154 (199)
T ss_pred HHhh
Confidence 7665
No 374
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.79 E-value=1e-19 Score=142.16 Aligned_cols=152 Identities=16% Similarity=0.137 Sum_probs=88.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhhc-ccCCCCeEEec-eEchhhccCCceeeEEEeecCCcccccccccCCCCCCCCCC
Q 029421 5 AGKCFLVTGPPGVGKTTLIMRVLESL-KASNPSLKVQG-FYTGEIRQGGQRVGFEVVTLDDRRAPLASINASSPESYRWP 82 (193)
Q Consensus 5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~-~~~~G~i~~~g-~~~~~~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~ 82 (193)
+|++++|+||||||||||+++|++.+ -+..+....+. ............++++||.......................
T Consensus 27 ~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~r~~gl~~~~~~~~~ 106 (213)
T cd03279 27 NNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKYRVERSRGLDYDQFTRIV 106 (213)
T ss_pred ccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEEEEEEECCeEEEEEEecCCCHHHHHHhh
Confidence 47899999999999999999999644 33334333221 01111123345688888876322221111101000000000
Q ss_pred --cccce-e--------eehhhhhhhcccccccC----------CCCCEEEEecC-CCccccccchHHHHHHHHhC-CCc
Q 029421 83 --TVGRY-K--------VDVASFEAIALPELQVG----------ADTDLFVIDEV-GKMELFSSSFFPAVLRILES-NIP 139 (193)
Q Consensus 83 --~~~~~-~--------~~~~~l~~~~l~~~~l~----------~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~-g~t 139 (193)
..... . .......++.+.. .++ .+|+++++||| +++|+..+..+.++++.+++ |.|
T Consensus 107 ~l~~g~l~~~l~~~~~~lS~G~~~r~~la~-al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~t 185 (213)
T cd03279 107 LLPQGEFDRFLARPVSTLSGGETFLASLSL-ALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRM 185 (213)
T ss_pred hhhhcchHHHhcCCccccCHHHHHHHHHHH-HHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCE
Confidence 00000 0 0000001111110 132 36899999999 69999999989999988876 899
Q ss_pred EEEEecCCCCCCChhHHHHHhcCC
Q 029421 140 VLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 140 vl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
||++ ||+.+.+..+|+++
T Consensus 186 ii~i------tH~~~~~~~~~~~i 203 (213)
T cd03279 186 VGVI------SHVEELKERIPQRL 203 (213)
T ss_pred EEEE------ECchHHHHhhCcEE
Confidence 9999 99999898888873
No 375
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.79 E-value=1.8e-19 Score=143.21 Aligned_cols=51 Identities=8% Similarity=0.243 Sum_probs=43.1
Q ss_pred CCCCEEEEecC-CCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 106 ADTDLFVIDEV-GKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 106 ~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+|+++++||| ++||+.++..+.+.++.+.++.++|++ +|+ .++.++||++
T Consensus 179 ~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~------~h~-~~~~~~~d~i 230 (243)
T cd03272 179 DPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITT------TFR-PELLEVADKF 230 (243)
T ss_pred CCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEE------ecC-HHHHhhCCEE
Confidence 46899999999 699999999999999888667788888 787 4577899984
No 376
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.77 E-value=5e-19 Score=135.45 Aligned_cols=161 Identities=14% Similarity=0.198 Sum_probs=111.4
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhccc----CCCCeEEeceEchh------hccCCceeeEEEeecCCccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKA----SNPSLKVQGFYTGE------IRQGGQRVGFEVVTLDDRRAPLAS 70 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~----~~G~i~~~g~~~~~------~~~~~~~ig~~~q~~~~~~~~~~~ 70 (193)
+++++||+-+|+|.||||||-..|.|+|..+- +....++++.+.-. .+..++.++++||++..-..+-+.
T Consensus 28 ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP~sCLDPS~~ 107 (330)
T COG4170 28 MTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSER 107 (330)
T ss_pred eeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcCchhhcChHHH
Confidence 47889999999999999999999999998753 34456666665421 112346778999987211111111
Q ss_pred c------cCCCCCC--CCCCcc-cceeeehhhhhhhccccc-----------------------ccCCCCCEEEEecC-C
Q 029421 71 I------NASSPES--YRWPTV-GRYKVDVASFEAIALPEL-----------------------QVGADTDLFVIDEV-G 117 (193)
Q Consensus 71 ~------~~~~~~~--~~~~~~-~~~~~~~~~l~~~~l~~~-----------------------~l~~~p~llllDEp-~ 117 (193)
+ ..+...+ ..|... .+.+++.+.+-++|+.+- +++.+|++||.||| +
T Consensus 108 iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN 187 (330)
T COG4170 108 VGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALANQPRLLIADEPTN 187 (330)
T ss_pred HHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccCcceeeeeehhhccCCceEeccCCCc
Confidence 0 1111111 111111 122445566667766432 17889999999999 5
Q ss_pred CccccccchHHHHHHHHhC--CCcEEEEecCCCCCCChhHHHHHhcCCCcEE
Q 029421 118 KMELFSSSFFPAVLRILES--NIPVLASIPAPKSGRDIPAVARLRNHPGATI 167 (193)
Q Consensus 118 ~LD~~~~~~~~~ll~~l~~--g~tvl~~~~~~~~tHd~~~~~~~~d~~~~~~ 167 (193)
.+|+..+.++..++..+.+ |.||+++ +||+..+.+.||++++.+
T Consensus 188 ~~e~~Tq~QifRLLs~mNQn~~TtILL~------s~Dl~~is~W~d~i~VlY 233 (330)
T COG4170 188 SMEPTTQAQIFRLLSRLNQNSNTTILLI------SHDLQMISQWADKINVLY 233 (330)
T ss_pred ccCccHHHHHHHHHHHhhccCCceEEEE------cccHHHHHHHhhheEEEE
Confidence 9999999999999999875 8999999 999999999999975443
No 377
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.77 E-value=8.1e-19 Score=149.22 Aligned_cols=163 Identities=13% Similarity=0.186 Sum_probs=100.0
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecCC----cccccccccCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDD----RRAPLASINASSP 76 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~----~~~~~~~~~~~~~ 76 (193)
|-|+.++.++++||||+|||||||++.|.+.|+.|.|.-.- .-.+++.-|+... ..++.++.. .
T Consensus 411 fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~---------H~~~~~y~Qh~~e~ldl~~s~le~~~---~ 478 (614)
T KOG0927|consen 411 FGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHS---------HNKLPRYNQHLAEQLDLDKSSLEFMM---P 478 (614)
T ss_pred cccCcccceeEecCCCCchhhhHHHHhhccccccccccccc---------cccchhhhhhhHhhcCcchhHHHHHH---H
Confidence 45778999999999999999999999999999999874321 1122322232210 111111110 0
Q ss_pred CCCCCCcccceeeehhhhhhhcccccc---------------------cCCCCCEEEEecC-CCccccccchHHHHHHHH
Q 029421 77 ESYRWPTVGRYKVDVASFEAIALPELQ---------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRIL 134 (193)
Q Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~l~~~~---------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l 134 (193)
.++.....+.....+.++|+.... +...|.+|+|||| ++||........+.+..+
T Consensus 479 ---~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~ 555 (614)
T KOG0927|consen 479 ---KFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF 555 (614)
T ss_pred ---hccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc
Confidence 011111122233455555554211 6789999999999 699988754444444433
Q ss_pred hCCCcEEEEecCCCCCCChhHHHHHhcCCC---cEEEEeCCCChhHHHHHHHHHH
Q 029421 135 ESNIPVLASIPAPKSGRDIPAVARLRNHPG---ATIFTLSPGNRDSLKDNIYYQL 186 (193)
Q Consensus 135 ~~g~tvl~~~~~~~~tHd~~~~~~~~d~~~---~~~~~~~~~~~~~l~~~~~~~~ 186 (193)
..+||++ |||...+.++++++= -..+...++....-.+....++
T Consensus 556 --~Ggvv~v------SHDfrlI~qVaeEi~~c~~~~~~~~~G~i~~yk~~l~~~~ 602 (614)
T KOG0927|consen 556 --PGGVVLV------SHDFRLISQVAEEIWVCENGTVTKWDGDIEIYKEHLKKKR 602 (614)
T ss_pred --CCceeee------echhhHHHHHHHHhHhhccCceeecCccHHHHHHHHHHHH
Confidence 5689999 999999999999831 1123455566555555554443
No 378
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.77 E-value=3.1e-19 Score=139.41 Aligned_cols=50 Identities=16% Similarity=0.261 Sum_probs=43.8
Q ss_pred CCCEEEEecC-CCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 107 DTDLFVIDEV-GKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 107 ~p~llllDEp-~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
+|+++++||| ++||+.++..+.++++.++++.++|++ ||+ +++.++||++
T Consensus 149 ~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iiv------s~~-~~~~~~~d~v 199 (212)
T cd03274 149 PTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVI------SLR-NNMFELADRL 199 (212)
T ss_pred CCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEE------ECc-HHHHHhCCEE
Confidence 5799999999 699999999999999998777788888 898 5677899984
No 379
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.76 E-value=1.4e-18 Score=162.42 Aligned_cols=164 Identities=13% Similarity=0.167 Sum_probs=117.5
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCCc-ccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDDR-RAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~~-~~~~~~~~~~~~~ 77 (193)
|+|++||.+||+|..|||||||+.+|.++..|.+|+|.+||.++.+. .+.|.+++.+||+|..+ -+...|++--...
T Consensus 1161 ~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~e~ 1240 (1381)
T KOG0054|consen 1161 FTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPFDEY 1240 (1381)
T ss_pred EEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCccccc
Confidence 57999999999999999999999999999999999999999998643 45678999999998422 2333332211110
Q ss_pred CCCCCcccceeeehhhhhhhc-----------ccc--------------------cccCCCCCEEEEecC-CCccccccc
Q 029421 78 SYRWPTVGRYKVDVASFEAIA-----------LPE--------------------LQVGADTDLFVIDEV-GKMELFSSS 125 (193)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~-----------l~~--------------------~~l~~~p~llllDEp-~~LD~~~~~ 125 (193)
. . +..=+++++.. +.. .+++.++++|+|||+ +++|+.+-.
T Consensus 1241 s----D----~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~ 1312 (1381)
T KOG0054|consen 1241 S----D----DEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDA 1312 (1381)
T ss_pred C----H----HHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHH
Confidence 0 0 00001111111 110 018899999999999 599999999
Q ss_pred hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHHHH
Q 029421 126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLKDN 181 (193)
Q Consensus 126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~~~ 181 (193)
.+++.++.--+++|||.+ .|.++.+.. ||++ +|++ ++.+.+.+|.++
T Consensus 1313 lIQ~tIR~~F~dcTVltI------AHRl~TVmd-~DrVlVld~G~v--~EfdsP~~Ll~~ 1363 (1381)
T KOG0054|consen 1313 LIQKTIREEFKDCTVLTI------AHRLNTVMD-SDRVLVLDAGRV--VEFDSPAELLSD 1363 (1381)
T ss_pred HHHHHHHHHhcCCeEEEE------eeccchhhh-cCeEEEeeCCeE--eecCChHHHHhC
Confidence 999999886568999999 999998875 6884 3333 344556666655
No 380
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.74 E-value=4.4e-18 Score=135.83 Aligned_cols=50 Identities=14% Similarity=0.154 Sum_probs=43.7
Q ss_pred CCCEEEEecC-CCccccccchHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 107 DTDLFVIDEV-GKMELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 107 ~p~llllDEp-~~LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
+|+++|+||| ++||+..+..+.++++.+++ |.+||++ ||+.+ ...+||++
T Consensus 177 ~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~i------sH~~~-~~~~~d~i 228 (247)
T cd03275 177 PAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVI------SLKEE-FFSKADAL 228 (247)
T ss_pred CCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEE------ECCHH-HHhhCCeE
Confidence 5899999999 69999999999999998876 9999999 99955 45689884
No 381
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.74 E-value=2.9e-18 Score=143.51 Aligned_cols=166 Identities=16% Similarity=0.250 Sum_probs=103.2
Q ss_pred cccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecCCc--ccccccccCCCCC--
Q 029421 2 AAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDR--RAPLASINASSPE-- 77 (193)
Q Consensus 2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~~--~~~~~~~~~~~~~-- 77 (193)
+|..||+++++||||.|||||+++|+|.++|++|. .. .-+++|=||-..+. .++.+.+.-....
T Consensus 363 ~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~-~~-----------~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~ 430 (591)
T COG1245 363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS-EE-----------DLKVSYKPQYISPDYDGTVEDLLRSAIRSAF 430 (591)
T ss_pred eeecceEEEEECCCCcchHHHHHHHhccccCCCCC-Cc-----------cceEeecceeecCCCCCcHHHHHHHhhhhhc
Confidence 46789999999999999999999999999999997 11 23456666644211 1111111000000
Q ss_pred CCCCCccc--ceeeehhhh------------hhhcccccccCCCCCEEEEecC-CCccccccchHHHHHHHHhC--CCcE
Q 029421 78 SYRWPTVG--RYKVDVASF------------EAIALPELQVGADTDLFVIDEV-GKMELFSSSFFPAVLRILES--NIPV 140 (193)
Q Consensus 78 ~~~~~~~~--~~~~~~~~l------------~~~~l~~~~l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~--g~tv 140 (193)
...+...+ +-......+ +++.+. ..|..++++++|||| +-||...|..+.+.++.+.+ ++|.
T Consensus 431 ~~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIa-a~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta 509 (591)
T COG1245 431 GSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIA-AALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTA 509 (591)
T ss_pred ccchhHHhhcCccchHHHHhcccccCCchhHHHHHHH-HHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceE
Confidence 00010000 000011111 122111 117899999999999 59999999888899988754 8999
Q ss_pred EEEecCCCCCCChhHHHHHhcCCCcEEEEeCCC------ChhHHHHHHHHHHHH
Q 029421 141 LASIPAPKSGRDIPAVARLRNHPGATIFTLSPG------NRDSLKDNIYYQLTD 188 (193)
Q Consensus 141 l~~~~~~~~tHd~~~~~~~~d~~~~~~~~~~~~------~~~~l~~~~~~~~~~ 188 (193)
++| .||+..+..++|+. .++.-.|+ .+..+.+-.+.+++.
T Consensus 510 ~vV------dHDi~~~dyvsDr~--ivF~GePg~~g~a~~P~~mr~GMN~FLk~ 555 (591)
T COG1245 510 LVV------DHDIYMIDYVSDRL--IVFEGEPGKHGHASPPMSMREGMNRFLKN 555 (591)
T ss_pred EEE------ecceehhhhhhceE--EEEecCCCccCcCCCCccHHHHHHHHHHH
Confidence 999 99999999999984 22221221 233577766666553
No 382
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=99.74 E-value=2.2e-17 Score=124.37 Aligned_cols=165 Identities=45% Similarity=0.771 Sum_probs=116.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeec-CCcccccccccCCCCCCCCCCcccc
Q 029421 8 CFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTL-DDRRAPLASINASSPESYRWPTVGR 86 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (193)
.+.|+|+.|+|||||++-+...++.. .+.+.|+.....+...+++||-..+. .+....+.... ....+..+.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~--~~~v~Gf~t~evr~~g~r~GF~iv~l~~g~~~~la~~~-----~~~~~~vgk 73 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKK--GLPVGGFYTEEVRENGRRIGFDIVDLNSGEEAILARVD-----FRSGPRVGK 73 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHT--CGGEEEEEEEEEETTSSEEEEEEEET-TS-EEEEEETT-----SS-SCECTT
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhcc--CCccceEEeecccCCCceEEEEEEECcCCCcccccccc-----ccccccCCC
Confidence 37899999999999999999888643 35678877666666678899877665 33222222211 122344556
Q ss_pred eeeehhhhhhhccccccc-CCCCCEEEEecCCCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCCCc
Q 029421 87 YKVDVASFEAIALPELQV-GADTDLFVIDEVGKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHPGA 165 (193)
Q Consensus 87 ~~~~~~~l~~~~l~~~~l-~~~p~llllDEp~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~~~ 165 (193)
+....+.++.+++..+.- ..+++++++||.+.|+..+..+..++.+.+..++.+|.|+|. .++.+.+.+++.+.++
T Consensus 74 y~v~~e~fe~~~~~~L~~~~~~~~liviDEIG~mEl~~~~F~~~v~~~l~s~~~vi~vv~~---~~~~~~l~~i~~~~~~ 150 (168)
T PF03266_consen 74 YFVDLESFEEIGLPALRNALSSSDLIVIDEIGKMELKSPGFREAVEKLLDSNKPVIGVVHK---RSDNPFLEEIKRRPDV 150 (168)
T ss_dssp CEE-HHHHHCCCCCCCHHHHHCCHEEEE---STTCCC-CHHHHHHHHHHCTTSEEEEE--S---S--SCCHHHHHTTTTS
T ss_pred EEEcHHHHHHHHHHHHHhhcCCCCEEEEeccchhhhcCHHHHHHHHHHHcCCCcEEEEEec---CCCcHHHHHHHhCCCc
Confidence 667778888888776542 278999999999999999999888888888878999999885 3366789999999999
Q ss_pred EEEEeCCCChhHHHHHH
Q 029421 166 TIFTLSPGNRDSLKDNI 182 (193)
Q Consensus 166 ~~~~~~~~~~~~l~~~~ 182 (193)
.++.++..|++.+.+++
T Consensus 151 ~i~~vt~~NRd~l~~~i 167 (168)
T PF03266_consen 151 KIFEVTEENRDALPEEI 167 (168)
T ss_dssp EEEE--TTTCCCHHHHH
T ss_pred EEEEeChhHHhhHhhhh
Confidence 99999999999998876
No 383
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=1.4e-18 Score=144.24 Aligned_cols=172 Identities=12% Similarity=0.191 Sum_probs=115.9
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCCc-ccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDDR-RAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~~-~~~~~~~~~~~~~ 77 (193)
|+++.|+.++++||+|+||||+++++...+.+++|.|.++|++++.. ...++-||.+||+-..+ .+.+.|+.+..+.
T Consensus 284 f~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~ 363 (497)
T COG5265 284 FTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPD 363 (497)
T ss_pred ccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCcc
Confidence 67899999999999999999999999999999999999999998643 23467899999976222 2333444333221
Q ss_pred CCCCCc--ccceeeehhhhh--------hhccccc--------------ccCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421 78 SYRWPT--VGRYKVDVASFE--------AIALPEL--------------QVGADTDLFVIDEV-GKMELFSSSFFPAVLR 132 (193)
Q Consensus 78 ~~~~~~--~~~~~~~~~~l~--------~~~l~~~--------------~l~~~p~llllDEp-~~LD~~~~~~~~~ll~ 132 (193)
...... ..+........+ .+|...+ .++.+|+++++||. ++||....+.+++-++
T Consensus 364 at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~ 443 (497)
T COG5265 364 ATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALR 443 (497)
T ss_pred ccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHH
Confidence 110000 000000000011 1111111 17899999999999 6999999999999999
Q ss_pred HHhCCCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHHHH
Q 029421 133 ILESNIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLKDN 181 (193)
Q Consensus 133 ~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~~~ 181 (193)
....|.|-+++ .|.+..+.. ||++ +|. .++.+..++|.++
T Consensus 444 ~~~~~rttlvi------ahrlsti~~-adeiivl~~g~--i~erg~h~~ll~~ 487 (497)
T COG5265 444 EVSAGRTTLVI------AHRLSTIID-ADEIIVLDNGR--IVERGTHEELLAA 487 (497)
T ss_pred HHhCCCeEEEE------eehhhhccC-CceEEEeeCCE--EEecCcHHHHHHc
Confidence 98888888888 898877643 5652 222 3455666777665
No 384
>PRK13695 putative NTPase; Provisional
Probab=99.72 E-value=2.9e-16 Score=118.93 Aligned_cols=166 Identities=41% Similarity=0.722 Sum_probs=99.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecC-CcccccccccCCCCCCCCCCcccc
Q 029421 8 CFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD-DRRAPLASINASSPESYRWPTVGR 86 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 86 (193)
.++|+|+||||||||++.+++.+.+ .| +.+.|..........+..+|...+.. +....+..... ........
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~-~G-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~~ 74 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKE-EG-YKVGGFYTEEVREGGKRIGFKIIDLDTGEEGILARVGF-----PSRPRVGK 74 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CC-CeEEEEEcHHHHhcCCccceEEEEcCCCCeEEccccCC-----CCCCceee
Confidence 5899999999999999999988766 46 45555443322223344555444321 11111111000 01111112
Q ss_pred eeeehhhhhhhccccc-ccCCCCCEEEEecCCCccccccchHHHHHHH-HhCCCcEEEEecCCCCCCChh---HHHHHhc
Q 029421 87 YKVDVASFEAIALPEL-QVGADTDLFVIDEVGKMELFSSSFFPAVLRI-LESNIPVLASIPAPKSGRDIP---AVARLRN 161 (193)
Q Consensus 87 ~~~~~~~l~~~~l~~~-~l~~~p~llllDEp~~LD~~~~~~~~~ll~~-l~~g~tvl~~~~~~~~tHd~~---~~~~~~d 161 (193)
.....+.++.+..... ..+.+|+++++|||+.++..... +.+.+.. ++.|.++|++ +|+.. .+.++..
T Consensus 75 ~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~-~~~~l~~~~~~~~~~i~v------~h~~~~~~~~~~i~~ 147 (174)
T PRK13695 75 YVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPK-FVKAVEEVLDSEKPVIAT------LHRRSVHPFVQEIKS 147 (174)
T ss_pred EEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHH-HHHHHHHHHhCCCeEEEE------ECchhhHHHHHHHhc
Confidence 2223344444443221 14568999999998666555533 3444444 4449999999 77732 3444555
Q ss_pred CCCcEEEEeCCCChhHHHHHHHHHHH
Q 029421 162 HPGATIFTLSPGNRDSLKDNIYYQLT 187 (193)
Q Consensus 162 ~~~~~~~~~~~~~~~~l~~~~~~~~~ 187 (193)
+.++.++.+++.|++++.+++.+.++
T Consensus 148 ~~~~~i~~~~~~~r~~~~~~~~~~~~ 173 (174)
T PRK13695 148 RPGGRVYELTPENRDSLPFEILNRLK 173 (174)
T ss_pred cCCcEEEEEcchhhhhHHHHHHHHHh
Confidence 57889999999999999999988764
No 385
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.72 E-value=1.3e-17 Score=145.26 Aligned_cols=141 Identities=13% Similarity=0.165 Sum_probs=101.4
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecC-CcccccccccCCCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD-DRRAPLASINASSPESY 79 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~-~~~~~~~~~~~~~~~~~ 79 (193)
|++++|+.+.|.||||||||||+|+|+|+.|--+|+|.+- ...++-|+||.|+ +.-+..+.+.++.....
T Consensus 414 ~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P---------~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~ 484 (604)
T COG4178 414 FEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMP---------ADSALLFLPQRPYLPQGTLREALCYPNAAPD 484 (604)
T ss_pred eeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecC---------CCCceEEecCCCCCCCccHHHHHhCCCCCCC
Confidence 5789999999999999999999999999999988888653 2345789999873 33344444444432210
Q ss_pred CCCcccceeeehhhhhhhcccccc--------------------------cCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421 80 RWPTVGRYKVDVASFEAIALPELQ--------------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLR 132 (193)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~l~~~~--------------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~ 132 (193)
. ..+...+.+.++++.++. ++.+|++++|||. ++||+.+...++++++
T Consensus 485 -~----~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~ 559 (604)
T COG4178 485 -F----SDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLK 559 (604)
T ss_pred -C----ChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHH
Confidence 1 112234556666665442 7899999999999 6999999988888888
Q ss_pred HHhCCCcEEEEecCCCCCCChhHHHHHhcC
Q 029421 133 ILESNIPVLASIPAPKSGRDIPAVARLRNH 162 (193)
Q Consensus 133 ~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~ 162 (193)
.-..+.|||-| +|.. .+..+.++
T Consensus 560 ~~lp~~tvISV------~Hr~-tl~~~h~~ 582 (604)
T COG4178 560 EELPDATVISV------GHRP-TLWNFHSR 582 (604)
T ss_pred hhCCCCEEEEe------ccch-hhHHHHhh
Confidence 74458999999 7763 34444443
No 386
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.72 E-value=1.6e-17 Score=128.78 Aligned_cols=132 Identities=19% Similarity=0.146 Sum_probs=76.8
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhh-cccCCCCeEEeceEchhhccCCceeeEEEeecCCcccccccccCCCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLES-LKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPLASINASSPESY 79 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl-~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~ 79 (193)
+++..|++++|+||||||||||+++|++. +.+..|.... ..+..+++..+... .....+....
T Consensus 24 ~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~---------~~~~~i~~~dqi~~-~~~~~d~i~~------ 87 (202)
T cd03243 24 INLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVP---------AESASIPLVDRIFT-RIGAEDSISD------ 87 (202)
T ss_pred EEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCcc---------ccccccCCcCEEEE-EecCcccccC------
Confidence 35788999999999999999999999954 3334443211 11223343222110 0000000000
Q ss_pred CCCcccceeeehhhhhhhcccccccCCCCCEEEEecC-CCccccccchH-HHHHHHHhC-CCcEEEEecCCCCCCChhHH
Q 029421 80 RWPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEV-GKMELFSSSFF-PAVLRILES-NIPVLASIPAPKSGRDIPAV 156 (193)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp-~~LD~~~~~~~-~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~ 156 (193)
... ....+. .++.. .+..+.+|+++|+||| +|+|+..+..+ ..+++.+.+ +.++|++ ||+.+.+
T Consensus 88 ---~~s--~~~~e~-~~l~~-i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~------tH~~~~~ 154 (202)
T cd03243 88 ---GRS--TFMAEL-LELKE-ILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFA------THFHELA 154 (202)
T ss_pred ---Cce--eHHHHH-HHHHH-HHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEE------CChHHHH
Confidence 000 001111 11110 0124579999999999 69999887654 566777665 8999999 9997655
Q ss_pred HHHhcC
Q 029421 157 ARLRNH 162 (193)
Q Consensus 157 ~~~~d~ 162 (193)
. .+++
T Consensus 155 ~-~~~~ 159 (202)
T cd03243 155 D-LPEQ 159 (202)
T ss_pred H-Hhhc
Confidence 4 5665
No 387
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.70 E-value=2.6e-17 Score=127.41 Aligned_cols=133 Identities=17% Similarity=0.187 Sum_probs=78.1
Q ss_pred CcccCCC-EEEEEcCCCCcHHHHHHHHH-hhcccCCCC-eEEeceEchhhccCCceeeEEEeecCCcccccccccCCCCC
Q 029421 1 MAAGAGK-CFLVTGPPGVGKTTLIMRVL-ESLKASNPS-LKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge-~~~l~GpnGsGKSTLl~~i~-gl~~~~~G~-i~~~g~~~~~~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~ 77 (193)
|++.+|+ +++|+||||||||||+|.|+ +.+.+..|. +... ....++|..|... .....+....
T Consensus 22 ~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~---------~~~~~~~~~~~~~-~lg~~~~l~~---- 87 (200)
T cd03280 22 IQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAA---------EGSSLPVFENIFA-DIGDEQSIEQ---- 87 (200)
T ss_pred EEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCcccc---------ccccCcCccEEEE-ecCchhhhhc----
Confidence 4678885 89999999999999999998 333344441 1110 0112344333221 0000000000
Q ss_pred CCCCCcccceeeehhhhhhhcccccccCCCCCEEEEecC-CCccccccchH-HHHHHHHhC-CCcEEEEecCCCCCCChh
Q 029421 78 SYRWPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEV-GKMELFSSSFF-PAVLRILES-NIPVLASIPAPKSGRDIP 154 (193)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp-~~LD~~~~~~~-~~ll~~l~~-g~tvl~~~~~~~~tHd~~ 154 (193)
. .... .....+...+. ..+.+|+++++||| +++|+..+..+ ..+++.+.+ |.++|++ ||+ .
T Consensus 88 ~-----~s~f--s~g~~~~~~i~--~~~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~------tH~-~ 151 (200)
T cd03280 88 S-----LSTF--SSHMKNIARIL--QHADPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIAT------THY-G 151 (200)
T ss_pred C-----cchH--HHHHHHHHHHH--HhCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEE------CCH-H
Confidence 0 0000 00111111111 12479999999999 69999998766 467777766 8999999 998 5
Q ss_pred HHHHHhcCC
Q 029421 155 AVARLRNHP 163 (193)
Q Consensus 155 ~~~~~~d~~ 163 (193)
.+..+||+.
T Consensus 152 ~l~~~~d~~ 160 (200)
T cd03280 152 ELKAYAYKR 160 (200)
T ss_pred HHHHHHhcC
Confidence 677889884
No 388
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.70 E-value=3.8e-17 Score=131.63 Aligned_cols=122 Identities=22% Similarity=0.251 Sum_probs=80.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh---hccCCceeeEEEeecCC-cccccccccCCCCCCCCCC
Q 029421 7 KCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE---IRQGGQRVGFEVVTLDD-RRAPLASINASSPESYRWP 82 (193)
Q Consensus 7 e~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~---~~~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~~~~~~ 82 (193)
..++|+||||||||||+++|+|+++|++|++.++|+++.. .+.....++++||.... ...++++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~------------ 179 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDG------------ 179 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhccccccccccccccccc------------
Confidence 5689999999999999999999999999999999998742 12223345566664311 1111111
Q ss_pred cccceeeehhhhhhhcccccccCCCCCEEEEecCCCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcC
Q 029421 83 TVGRYKVDVASFEAIALPELQVGADTDLFVIDEVGKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNH 162 (193)
Q Consensus 83 ~~~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~ 162 (193)
.... + ++..+..+.+|+++++|||+. .+.+.++++.+.+|.++|++ +|+. .+...+++
T Consensus 180 ----~~k~-~-----~~~~~i~~~~P~villDE~~~-----~e~~~~l~~~~~~G~~vI~t------tH~~-~~~~~~~r 237 (270)
T TIGR02858 180 ----CPKA-E-----GMMMLIRSMSPDVIVVDEIGR-----EEDVEALLEALHAGVSIIAT------AHGR-DVEDLYKR 237 (270)
T ss_pred ----chHH-H-----HHHHHHHhCCCCEEEEeCCCc-----HHHHHHHHHHHhCCCEEEEE------echh-HHHHHHhC
Confidence 0001 0 112222457999999999852 34466777776679999999 9974 34444443
No 389
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.69 E-value=1.7e-17 Score=133.02 Aligned_cols=52 Identities=13% Similarity=0.248 Sum_probs=45.3
Q ss_pred cCCC---CCEEEEecC-CCccccccchHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcC
Q 029421 104 VGAD---TDLFVIDEV-GKMELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNH 162 (193)
Q Consensus 104 l~~~---p~llllDEp-~~LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~ 162 (193)
++.+ |+++||||| +|||+..+..+.++++.+.+ |.|||++ ||+++.+. .||+
T Consensus 184 L~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIii------tH~~~~i~-~aD~ 240 (261)
T cd03271 184 LSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVI------EHNLDVIK-CADW 240 (261)
T ss_pred HhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE------eCCHHHHH-hCCE
Confidence 5554 799999999 69999999999999998876 9999999 99998775 6886
No 390
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.67 E-value=1.2e-16 Score=149.61 Aligned_cols=154 Identities=20% Similarity=0.321 Sum_probs=108.9
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeec-CCcccccccccCCCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTL-DDRRAPLASINASSPESY 79 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~-~~~~~~~~~~~~~~~~~~ 79 (193)
|+|++|+.++|+||-|||||+||.+|+|.++..+|++.++|. ++|++|.+ ....+..+|+.+..+...
T Consensus 542 ~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs-----------iaYv~Q~pWI~ngTvreNILFG~~~d~ 610 (1381)
T KOG0054|consen 542 FEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS-----------VAYVPQQPWIQNGTVRENILFGSPYDE 610 (1381)
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe-----------EEEeccccHhhCCcHHHhhhcCccccH
Confidence 578999999999999999999999999999999999999873 89999987 334567777766543211
Q ss_pred CCCcccceeeehh------hhhhhccccc----------------------ccCCCCCEEEEecC-CCcccccc-chHHH
Q 029421 80 RWPTVGRYKVDVA------SFEAIALPEL----------------------QVGADTDLFVIDEV-GKMELFSS-SFFPA 129 (193)
Q Consensus 80 ~~~~~~~~~~~~~------~l~~~~l~~~----------------------~l~~~p~llllDEp-~~LD~~~~-~~~~~ 129 (193)
++++.+.+ .++.+.-.+. ++-+++++++||+| +++|.... ..+.+
T Consensus 611 -----~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ 685 (1381)
T KOG0054|consen 611 -----ERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEE 685 (1381)
T ss_pred -----HHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHH
Confidence 11211111 1111111111 16689999999999 89998885 57778
Q ss_pred HHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHH
Q 029421 130 VLRILESNIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLK 179 (193)
Q Consensus 130 ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~ 179 (193)
.++.+-+++|+|+| ||.++.+. -||.+ +|++ ...++.+++.
T Consensus 686 ci~~~L~~KT~ILV------THql~~L~-~ad~Iivl~~G~I--~~~Gty~el~ 730 (1381)
T KOG0054|consen 686 CIRGLLRGKTVILV------THQLQFLP-HADQIIVLKDGKI--VESGTYEELL 730 (1381)
T ss_pred HHHhhhcCCEEEEE------eCchhhhh-hCCEEEEecCCeE--ecccCHHHHH
Confidence 88666668999999 99876654 57773 3333 3334555555
No 391
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=99.67 E-value=2.8e-15 Score=110.03 Aligned_cols=170 Identities=39% Similarity=0.698 Sum_probs=124.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecC-CcccccccccCCCCCCCCCCcc
Q 029421 6 GKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD-DRRAPLASINASSPESYRWPTV 84 (193)
Q Consensus 6 Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~-~~~~~~~~~~~~~~~~~~~~~~ 84 (193)
-.-++|+|++|+||||++.-|+..+.-. | ..+.|.-..+.+...+++||--.+.. +....+... ....+..
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~-g-~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~------~~~~~rv 76 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREK-G-YKVGGFITPEVREGGKRIGFKIVDLATGEEGILARV------GFSRPRV 76 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhc-C-ceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEc------CCCCccc
Confidence 3468999999999999999999888654 4 77888888778888899999776653 222222221 1134666
Q ss_pred cceeeehhhhhhhcccccc-cCCCCCEEEEecCCCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 85 GRYKVDVASFEAIALPELQ-VGADTDLFVIDEVGKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 85 ~~~~~~~~~l~~~~l~~~~-l~~~p~llllDEp~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
+++....+.++++.+..+. -...+++++.||.+.|+..++++...+-..++.++.+|.++|.- |.+ +.+.++...-
T Consensus 77 GkY~V~v~~le~i~~~al~rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~~kpliatlHrr--sr~-P~v~~ik~~~ 153 (179)
T COG1618 77 GKYGVNVEGLEEIAIPALRRALEEADVIIIDEIGPMELKSKKFREAVEEVLKSGKPLIATLHRR--SRH-PLVQRIKKLG 153 (179)
T ss_pred ceEEeeHHHHHHHhHHHHHHHhhcCCEEEEecccchhhccHHHHHHHHHHhcCCCcEEEEEecc--cCC-hHHHHhhhcC
Confidence 7888888888888777655 23457999999999999999888887777787889999997631 122 4566665443
Q ss_pred CcEEEEeCCCChhHHHHHHHHHHH
Q 029421 164 GATIFTLSPGNRDSLKDNIYYQLT 187 (193)
Q Consensus 164 ~~~~~~~~~~~~~~l~~~~~~~~~ 187 (193)
...+ ++++.|++.+..++...+.
T Consensus 154 ~v~v-~lt~~NR~~i~~~Il~~L~ 176 (179)
T COG1618 154 GVYV-FLTPENRNRILNEILSVLK 176 (179)
T ss_pred CEEE-EEccchhhHHHHHHHHHhc
Confidence 3333 3999999988888776654
No 392
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.65 E-value=2.2e-16 Score=133.39 Aligned_cols=160 Identities=13% Similarity=0.125 Sum_probs=116.8
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEc-h---hhccCCceeeEEEeecC-----Ccccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYT-G---EIRQGGQRVGFEVVTLD-----DRRAPLASI 71 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~-~---~~~~~~~~ig~~~q~~~-----~~~~~~~~~ 71 (193)
|+|.+|||++|.|-.|.|-+.|+.+|+|+.++.+|+|.++|+++ . ........++|+|.+-. ..++..+|.
T Consensus 279 ~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~ 358 (501)
T COG3845 279 FEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENL 358 (501)
T ss_pred eEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHh
Confidence 68999999999999999999999999999998889999999986 2 22233456889998752 334555554
Q ss_pred cCCCCC---CCCCCc---ccceeeehhhhhhhccccc---------c------------cCCCCCEEEEecCC-Cccccc
Q 029421 72 NASSPE---SYRWPT---VGRYKVDVASFEAIALPEL---------Q------------VGADTDLFVIDEVG-KMELFS 123 (193)
Q Consensus 72 ~~~~~~---~~~~~~---~~~~~~~~~~l~~~~l~~~---------~------------l~~~p~llllDEp~-~LD~~~ 123 (193)
.+.... +..+.. ........+..+++++... + +..+|++||+.+|+ |||..+
T Consensus 359 vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA 438 (501)
T COG3845 359 VLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGA 438 (501)
T ss_pred hhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHH
Confidence 433221 111110 1111223344555544311 1 77999999999996 999999
Q ss_pred cchHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcCCCcE
Q 029421 124 SSFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNHPGAT 166 (193)
Q Consensus 124 ~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~~~~ 166 (193)
.+++.+.+...++ |++|+++ |-|++++..+||++.+.
T Consensus 439 ~~~I~~~l~e~r~~G~AVLLi------S~dLDEil~lsDrIaVi 476 (501)
T COG3845 439 IEFIHERLLELRDAGKAVLLI------SEDLDEILELSDRIAVI 476 (501)
T ss_pred HHHHHHHHHHHHhcCCEEEEE------ehhHHHHHHhhheeeee
Confidence 9888888877766 9999999 99999999999996543
No 393
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.64 E-value=8.4e-16 Score=118.86 Aligned_cols=52 Identities=13% Similarity=0.151 Sum_probs=43.6
Q ss_pred CCCCCEEEEecC-CCccccccchHHHHHHHHh-C---CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 105 GADTDLFVIDEV-GKMELFSSSFFPAVLRILE-S---NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 105 ~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~-~---g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
+.+|+++|+||| +++|+..+..+.+++..+. + +.+|+++ ||+++.+..+ |++
T Consensus 129 ~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~------th~~~~i~~~-d~v 185 (198)
T cd03276 129 VMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFIT------PQDISGLASS-DDV 185 (198)
T ss_pred ccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEE------CCcccccccc-cce
Confidence 589999999999 6999999988888887753 2 3589999 9999988776 775
No 394
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=8.8e-17 Score=136.22 Aligned_cols=51 Identities=18% Similarity=0.311 Sum_probs=43.8
Q ss_pred cCCCCCEEEEecC-CCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcC
Q 029421 104 VGADTDLFVIDEV-GKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNH 162 (193)
Q Consensus 104 l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~ 162 (193)
+..+|++|||||| +-||..+...+.+.+..+. .|+|+| |||-.++..+|..
T Consensus 213 lf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~--~T~liV------SHDr~FLn~V~td 264 (582)
T KOG0062|consen 213 LFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWK--ITSLIV------SHDRNFLNTVCTD 264 (582)
T ss_pred HhcCCCEEeecCCcccchhHHHHHHHHHHhhCC--ceEEEE------eccHHHHHHHHHH
Confidence 7899999999999 5899988777777777664 799999 9999999888864
No 395
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.63 E-value=7.9e-16 Score=119.47 Aligned_cols=138 Identities=16% Similarity=0.150 Sum_probs=79.6
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceee-EEEeecCCcccccccccCCCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVG-FEVVTLDDRRAPLASINASSPESY 79 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig-~~~q~~~~~~~~~~~~~~~~~~~~ 79 (193)
|++++|++++|+||||+||||++++++++.-- .++| |+|-.. ...+.++++........
T Consensus 24 ~~~~~~~~~~l~G~n~~GKstll~~i~~~~~l-------------------a~~G~~vpa~~-~~l~~~d~I~~~~~~~d 83 (204)
T cd03282 24 LTRGSSRFHIITGPNMSGKSTYLKQIALLAIM-------------------AQIGCFVPAEY-ATLPIFNRLLSRLSNDD 83 (204)
T ss_pred EeeCCCcEEEEECCCCCCHHHHHHHHHHHHHH-------------------HHcCCCcchhh-cCccChhheeEecCCcc
Confidence 35678899999999999999999999987411 0112 222111 11222222211110000
Q ss_pred CCCcccceeeehhhhhhhcccccccCCCCCEEEEecC-CCcccccc-chHHHHHHHHhC-CCcEEEEecCCCCCCChhHH
Q 029421 80 RWPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEV-GKMELFSS-SFFPAVLRILES-NIPVLASIPAPKSGRDIPAV 156 (193)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp-~~LD~~~~-~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~ 156 (193)
... ........+ +.++. ..+.++.+|+++++||| .|+|+... ....++++.+.+ |.++|++ ||+.+.+
T Consensus 84 ~~~-~~~S~fs~e-~~~~~-~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~------TH~~~l~ 154 (204)
T cd03282 84 SME-RNLSTFASE-MSETA-YILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFA------THFRDIA 154 (204)
T ss_pred ccc-hhhhHHHHH-HHHHH-HHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEE------CChHHHH
Confidence 000 000000011 11111 11225678999999999 69999764 456677887776 9999999 9998888
Q ss_pred HHHhcCCCcEE
Q 029421 157 ARLRNHPGATI 167 (193)
Q Consensus 157 ~~~~d~~~~~~ 167 (193)
..+++..+...
T Consensus 155 ~~~~~~~~v~~ 165 (204)
T cd03282 155 AILGNKSCVVH 165 (204)
T ss_pred HHhhcCCCeEE
Confidence 77766544433
No 396
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=9e-16 Score=128.53 Aligned_cols=160 Identities=17% Similarity=0.342 Sum_probs=91.9
Q ss_pred cccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecCCcc----cccccccCCCCC
Q 029421 2 AAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRR----APLASINASSPE 77 (193)
Q Consensus 2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~~~----~~~~~~~~~~~~ 77 (193)
-|.--..++|+||||.||||||+++.|-+.|+.|+.+- .++-+||+.-|+....+ ++.+.+-.
T Consensus 609 GiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RK---------nhrL~iG~FdQh~~E~L~~Eetp~EyLqr---- 675 (807)
T KOG0066|consen 609 GIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRK---------NHRLRIGWFDQHANEALNGEETPVEYLQR---- 675 (807)
T ss_pred cccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhc---------cceeeeechhhhhHHhhccccCHHHHHHH----
Confidence 34555789999999999999999999999999997643 23556887766542221 22111100
Q ss_pred CCCCCcccceeeehhhhhhhcccc---------cc------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh
Q 029421 78 SYRWPTVGRYKVDVASFEAIALPE---------LQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE 135 (193)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~l~~---------~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~ 135 (193)
.++.+ ++.+...+-.+|+.. ++ -+..|++|||||| ++||..+...+. ..+.
T Consensus 676 ~FNlp----yq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALa---EAIn 748 (807)
T KOG0066|consen 676 KFNLP----YQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALA---EAIN 748 (807)
T ss_pred hcCCC----hHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHH---HHHH
Confidence 00001 111112222222211 11 3578999999999 599988744333 4444
Q ss_pred C-CCcEEEEecCCCCCCChhHHHHHhcCCCcEEEEeCC-------CChhHHHHHHHHHHHHHhh
Q 029421 136 S-NIPVLASIPAPKSGRDIPAVARLRNHPGATIFTLSP-------GNRDSLKDNIYYQLTDAVS 191 (193)
Q Consensus 136 ~-g~tvl~~~~~~~~tHd~~~~~~~~d~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~~ 191 (193)
+ ...||+| |||-..+ .+.+....++.. +..+.-.+++...+-+.+.
T Consensus 749 ey~GgVi~V------sHDeRLi----~eT~C~LwVvE~Q~i~eIdGdFeDYkkEVLdaLGEv~v 802 (807)
T KOG0066|consen 749 EYNGGVIMV------SHDERLI----VETDCNLWVVENQGIDEIDGDFEDYKKEVLDALGEVLV 802 (807)
T ss_pred hccCcEEEE------eccccee----eecCceEEEEccCChhhccccHHHHHHHHHHHHHHHhh
Confidence 4 5689999 9996554 233333433333 2333445555555555443
No 397
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.59 E-value=6.8e-16 Score=131.57 Aligned_cols=53 Identities=11% Similarity=0.151 Sum_probs=44.8
Q ss_pred cCCCCCEEEEecC-CCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 104 VGADTDLFVIDEV-GKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 104 l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
|..+|++|+|||| ++||+.+...+.+.+.....+ +++++ +|+-+++-.+|.++
T Consensus 236 Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~-~lVi~------sh~QDfln~vCT~I 289 (614)
T KOG0927|consen 236 LFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRI-ILVIV------SHSQDFLNGVCTNI 289 (614)
T ss_pred HhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCc-eEEEE------ecchhhhhhHhhhh
Confidence 8899999999999 599999988777777765544 78888 89988999999873
No 398
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.58 E-value=5.8e-15 Score=126.77 Aligned_cols=141 Identities=15% Similarity=0.098 Sum_probs=93.4
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecC-CcccccccccCCCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD-DRRAPLASINASSPESY 79 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~-~~~~~~~~~~~~~~~~~ 79 (193)
|+|++|+.+.|+||||||||+|+|.++|+.+-.+|++..-... ..+.+-|+||.|+ ..-+..+.+.++.....
T Consensus 456 ~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~------~~~~lfflPQrPYmt~GTLRdQvIYP~~~~~ 529 (659)
T KOG0060|consen 456 LEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDG------GPKDLFFLPQRPYMTLGTLRDQVIYPLKAED 529 (659)
T ss_pred eEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccC------CCCceEEecCCCCccccchhheeeccCcccc
Confidence 5789999999999999999999999999999999988653211 1145789999873 22233344444422111
Q ss_pred CCCcccceeeehhhhhhhcccccc-------------------------------cCCCCCEEEEecC-CCccccccchH
Q 029421 80 RWPTVGRYKVDVASFEAIALPELQ-------------------------------VGADTDLFVIDEV-GKMELFSSSFF 127 (193)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~l~~~~-------------------------------l~~~p~llllDEp-~~LD~~~~~~~ 127 (193)
.+..........+.++.+++.++. +..+|++-+|||. +++|......+
T Consensus 530 ~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~ 609 (659)
T KOG0060|consen 530 MDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGAL 609 (659)
T ss_pred ccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHH
Confidence 111111122334455555554332 6689999999999 58887765555
Q ss_pred HHHHHHHhCCCcEEEEecCCCCCCChhH
Q 029421 128 PAVLRILESNIPVLASIPAPKSGRDIPA 155 (193)
Q Consensus 128 ~~ll~~l~~g~tvl~~~~~~~~tHd~~~ 155 (193)
.+.+++. |.|.|-| +|.-..
T Consensus 610 Yr~~r~~--giT~iSV------gHRkSL 629 (659)
T KOG0060|consen 610 YRKCREM--GITFISV------GHRKSL 629 (659)
T ss_pred HHHHHHc--CCeEEEe------ccHHHH
Confidence 5444432 8999999 998543
No 399
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.56 E-value=3.7e-14 Score=110.83 Aligned_cols=124 Identities=18% Similarity=0.194 Sum_probs=74.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHh--hcccCCCCeEEeceEchhhccCCceeeEEEeecCCcccccccccCCCCCCCCCCcc
Q 029421 7 KCFLVTGPPGVGKTTLIMRVLE--SLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPLASINASSPESYRWPTV 84 (193)
Q Consensus 7 e~~~l~GpnGsGKSTLl~~i~g--l~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (193)
.+++|+||||+|||||||.++. .+ +..|.+.... .-.++|..|... .....+... . ..
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~---------~~~~~~~d~i~~-~l~~~~si~----~-----~~ 89 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD---------SATIGLVDKIFT-RMSSRESVS----S-----GQ 89 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC---------CcEEeeeeeeee-eeCCccChh----h-----cc
Confidence 6899999999999999999984 34 5566553321 234556555321 110000000 0 00
Q ss_pred cceeeehhhhhhhcccccccCCCCCEEEEecC-CCccccc-cchHHHHHHHHhC-C---CcEEEEecCCCCCCChhHHHH
Q 029421 85 GRYKVDVASFEAIALPELQVGADTDLFVIDEV-GKMELFS-SSFFPAVLRILES-N---IPVLASIPAPKSGRDIPAVAR 158 (193)
Q Consensus 85 ~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp-~~LD~~~-~~~~~~ll~~l~~-g---~tvl~~~~~~~~tHd~~~~~~ 158 (193)
. ....-++++.. .+.++.+|+++|+||| .|+|+.. .....++++.+.+ | .++|++ ||+.+.+..
T Consensus 90 S---~f~~el~~l~~-~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~------TH~~~l~~~ 159 (213)
T cd03281 90 S---AFMIDLYQVSK-ALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVS------THFHELFNR 159 (213)
T ss_pred c---hHHHHHHHHHH-HHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEE------cChHHHHHh
Confidence 0 01111222221 1124678999999999 6999876 4566677777643 2 478999 999888776
Q ss_pred Hh
Q 029421 159 LR 160 (193)
Q Consensus 159 ~~ 160 (193)
..
T Consensus 160 ~~ 161 (213)
T cd03281 160 SL 161 (213)
T ss_pred hh
Confidence 54
No 400
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.56 E-value=2.9e-15 Score=143.64 Aligned_cols=50 Identities=18% Similarity=0.254 Sum_probs=46.3
Q ss_pred CCCCEEEEecC-CCccccccchHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcC
Q 029421 106 ADTDLFVIDEV-GKMELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNH 162 (193)
Q Consensus 106 ~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~ 162 (193)
.+|+++||||| +|||+..+..+.++++.+++ |.|||++ ||+++.+ ++||+
T Consensus 829 ~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiI------sHdl~~i-~~aDr 880 (1809)
T PRK00635 829 KKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVII------EHNMHVV-KVADY 880 (1809)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEE------eCCHHHH-HhCCE
Confidence 69999999999 69999999999999998876 9999999 9999988 78998
No 401
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.56 E-value=1.3e-14 Score=113.48 Aligned_cols=60 Identities=10% Similarity=0.015 Sum_probs=48.6
Q ss_pred CCCCCEEEEecC-CCccccccchHHHHHHHHh-C-C-CcEEEEecCCCCCCChhHHHHHhcCCCcEEEEeCC
Q 029421 105 GADTDLFVIDEV-GKMELFSSSFFPAVLRILE-S-N-IPVLASIPAPKSGRDIPAVARLRNHPGATIFTLSP 172 (193)
Q Consensus 105 ~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~-~-g-~tvl~~~~~~~~tHd~~~~~~~~d~~~~~~~~~~~ 172 (193)
+.+|+++++||| ++||+..+..+.+++..+. + | .++|++ ||++....+++|+. .+.++..
T Consensus 146 ~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viii------th~~~~~~~~~~~~--~v~~l~~ 209 (213)
T cd03277 146 LTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLI------TPKLLPGLNYHEKM--TVLCVYN 209 (213)
T ss_pred ccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEE------chhhccCCcccCce--EEEEEec
Confidence 579999999999 6999999998888887764 4 5 479999 99988888888876 4444443
No 402
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.56 E-value=2.8e-15 Score=125.87 Aligned_cols=169 Identities=17% Similarity=0.165 Sum_probs=103.3
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh--hccCC---------------ceeeEEEeecCCcc
Q 029421 3 AGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE--IRQGG---------------QRVGFEVVTLDDRR 65 (193)
Q Consensus 3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~--~~~~~---------------~~ig~~~q~~~~~~ 65 (193)
..+|.+++|+||||.||||.+|+|+|.+.|.-|+. ++.+-|. .+.++ .++..=+|-.
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~--~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYV---- 170 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELKPNLGRY--EDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYV---- 170 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCC--CCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHH----
Confidence 46899999999999999999999999999988763 3322221 01110 0111111100
Q ss_pred cccccccCCCCCCCC-----CCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCc
Q 029421 66 APLASINASSPESYR-----WPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKM 119 (193)
Q Consensus 66 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~L 119 (193)
+. ++. .... ....+......+..+++++... + ++.+++++++||| +.|
T Consensus 171 ---d~--iPk-~~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyL 244 (591)
T COG1245 171 ---DL--IPK-VVKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYL 244 (591)
T ss_pred ---HH--HHH-HhcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccc
Confidence 00 000 0000 0000111122334444444322 1 7899999999999 699
Q ss_pred cccccchHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcCCCcEE-----EEeCCCChhHHHHHHHHHHHHHh
Q 029421 120 ELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNHPGATI-----FTLSPGNRDSLKDNIYYQLTDAV 190 (193)
Q Consensus 120 D~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~ 190 (193)
|...|-....+++.+.+ +++||+| .||+..+.-++|-+++.. +-+.. .+-....-|+..++-++
T Consensus 245 Di~qRl~~ar~Irel~~~~k~ViVV------EHDLavLD~lsD~vhI~YG~pg~YGvvs-~p~svr~gIN~yL~Gyl 314 (591)
T COG1245 245 DIRQRLNAARVIRELAEDGKYVIVV------EHDLAVLDYLSDFVHILYGEPGVYGVVS-KPKSVRVGINEYLKGYL 314 (591)
T ss_pred cHHHHHHHHHHHHHHhccCCeEEEE------echHHHHHHhhheeEEEecCCccceEec-cchHHHHHHHHHHhccC
Confidence 99999888999999987 8999999 999999999999753221 22222 23346666666665443
No 403
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.55 E-value=3.7e-15 Score=137.08 Aligned_cols=52 Identities=13% Similarity=0.222 Sum_probs=46.5
Q ss_pred cCCCC---CEEEEecC-CCccccccchHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcC
Q 029421 104 VGADT---DLFVIDEV-GKMELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNH 162 (193)
Q Consensus 104 l~~~p---~llllDEp-~~LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~ 162 (193)
++.+| +++||||| +|||+..+..+.++++.+.+ |.|||++ +|+++.+. .||+
T Consensus 845 L~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIii------tH~~~~i~-~aD~ 901 (943)
T PRK00349 845 LSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVI------EHNLDVIK-TADW 901 (943)
T ss_pred HhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE------ecCHHHHH-hCCE
Confidence 67788 99999999 69999999999999998876 9999999 99998874 6887
No 404
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.52 E-value=3.2e-14 Score=106.62 Aligned_cols=126 Identities=17% Similarity=0.251 Sum_probs=72.9
Q ss_pred cCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeE-EEeecCCcccccccccCCCCCCCCCC
Q 029421 4 GAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGF-EVVTLDDRRAPLASINASSPESYRWP 82 (193)
Q Consensus 4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~-~~q~~~~~~~~~~~~~~~~~~~~~~~ 82 (193)
.++.+++|+|||||||||+++.+....-..+|...... ..+.|+ ++...... .+... ...
T Consensus 19 ~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~---------~~~~g~~~~~~~~~~--i~~~~--------~lS 79 (162)
T cd03227 19 GEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRS---------GVKAGCIVAAVSAEL--IFTRL--------QLS 79 (162)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccC---------cccCCCcceeeEEEE--ehhee--------ecc
Confidence 34569999999999999999998877655554433210 001121 11110000 00000 000
Q ss_pred cccceeeehhhhhhhccccc-cc--CCCCCEEEEecC-CCccccccchHHHHHHHHh-CCCcEEEEecCCCCCCChhHHH
Q 029421 83 TVGRYKVDVASFEAIALPEL-QV--GADTDLFVIDEV-GKMELFSSSFFPAVLRILE-SNIPVLASIPAPKSGRDIPAVA 157 (193)
Q Consensus 83 ~~~~~~~~~~~l~~~~l~~~-~l--~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~-~g~tvl~~~~~~~~tHd~~~~~ 157 (193)
. + ..+++.+... .. ..+|+++++||| .++|+..+..+...+..+. +|.++|++ ||+.+...
T Consensus 80 ~-G-------~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~------TH~~~~~~ 145 (162)
T cd03227 80 G-G-------EKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVI------THLPELAE 145 (162)
T ss_pred c-c-------HHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEE------cCCHHHHH
Confidence 0 0 0011111110 01 138999999999 6999999877777776654 37899999 99987664
Q ss_pred HHhcCC
Q 029421 158 RLRNHP 163 (193)
Q Consensus 158 ~~~d~~ 163 (193)
.+|+.
T Consensus 146 -~~d~~ 150 (162)
T cd03227 146 -LADKL 150 (162)
T ss_pred -hhhhE
Confidence 57773
No 405
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.52 E-value=6.6e-14 Score=106.53 Aligned_cols=52 Identities=6% Similarity=0.110 Sum_probs=44.1
Q ss_pred CCCCCEEEEecC-CCccccccchHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 105 GADTDLFVIDEV-GKMELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 105 ~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
..+|+++++||| +++|+..+..+.+++..+.+ |.++|++ ||+.+.+ ..+|++
T Consensus 114 ~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIii------SH~~~~~-~~adrv 167 (178)
T cd03239 114 IKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVI------TLKKEMF-ENADKL 167 (178)
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE------ECCHHHH-hhCCeE
Confidence 368999999999 69999999988888888766 7999999 9997655 467773
No 406
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.52 E-value=5.1e-14 Score=110.31 Aligned_cols=123 Identities=18% Similarity=0.238 Sum_probs=68.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhhccc-CCCCeEEeceEchhhccCCceeeEEEeecCCcccccccccCCCCCCCCCCccc
Q 029421 7 KCFLVTGPPGVGKTTLIMRVLESLKA-SNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPLASINASSPESYRWPTVG 85 (193)
Q Consensus 7 e~~~l~GpnGsGKSTLl~~i~gl~~~-~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (193)
++++|+||||||||||+|.+++..-. ..|. .+ +.....++++.+-+ ...+..++....
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~------~v---p~~~~~i~~~~~i~-~~~~~~~~ls~g----------- 89 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVALIALLAQIGS------FV---PASKAEIGVVDRIF-TRIGASDDLAGG----------- 89 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHhccCC------ee---ccccceecceeeEe-ccCCchhhhccC-----------
Confidence 79999999999999999999875321 1221 11 11233456554422 122222221110
Q ss_pred ceeeehhhhhhhcccc-cccCCCCCEEEEecC---C-CccccccchHHHHHHHHh-C-CCcEEEEecCCCCCCChhHHHH
Q 029421 86 RYKVDVASFEAIALPE-LQVGADTDLFVIDEV---G-KMELFSSSFFPAVLRILE-S-NIPVLASIPAPKSGRDIPAVAR 158 (193)
Q Consensus 86 ~~~~~~~~l~~~~l~~-~~l~~~p~llllDEp---~-~LD~~~~~~~~~ll~~l~-~-g~tvl~~~~~~~~tHd~~~~~~ 158 (193)
.... ..+...+.. +..+.+|+++|+||| + ++|..+ ....+++.+. . +.++|++ ||+. ++.+
T Consensus 90 ~s~f---~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~--~~~~il~~l~~~~~~~vi~~------TH~~-~l~~ 157 (216)
T cd03284 90 RSTF---MVEMVETANILNNATERSLVLLDEIGRGTSTYDGLS--IAWAIVEYLHEKIGAKTLFA------THYH-ELTE 157 (216)
T ss_pred cchH---HHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHH--HHHHHHHHHHhccCCcEEEE------eCcH-HHHH
Confidence 0000 111111111 113578999999999 3 455432 3455666554 4 7899999 9995 5566
Q ss_pred HhcC
Q 029421 159 LRNH 162 (193)
Q Consensus 159 ~~d~ 162 (193)
++++
T Consensus 158 l~~~ 161 (216)
T cd03284 158 LEGK 161 (216)
T ss_pred Hhhc
Confidence 7776
No 407
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.49 E-value=4.2e-14 Score=108.11 Aligned_cols=153 Identities=11% Similarity=0.120 Sum_probs=91.9
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc--cCCceeeEEEeecCCcccccccccCCCC--
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR--QGGQRVGFEVVTLDDRRAPLASINASSP-- 76 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~--~~~~~ig~~~q~~~~~~~~~~~~~~~~~-- 76 (193)
++++.|..+.++|.||||||||+|+++|---.-.|.|.+.|.+..... .......|.-.+... .... +-..+..
T Consensus 35 ldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl~YLGgeW~~-~~~~-agevplq~D 112 (291)
T KOG2355|consen 35 LDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGDLSYLGGEWSK-TVGI-AGEVPLQGD 112 (291)
T ss_pred eccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCceeEecccccc-cccc-ccccccccc
Confidence 467899999999999999999999999975555589999998763211 111223443322110 0000 0000000
Q ss_pred ----CC-CCCCcccceeeehhhhhhhc------cccc------------ccCCCCCEEEEecCC-CccccccchHHHHHH
Q 029421 77 ----ES-YRWPTVGRYKVDVASFEAIA------LPEL------------QVGADTDLFVIDEVG-KMELFSSSFFPAVLR 132 (193)
Q Consensus 77 ----~~-~~~~~~~~~~~~~~~l~~~~------l~~~------------~l~~~p~llllDEp~-~LD~~~~~~~~~ll~ 132 (193)
.. ..... ....+.......++ +... -|+..-++|+|||.+ -||..++..+.++++
T Consensus 113 ~sae~mifgV~g-~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlk 191 (291)
T KOG2355|consen 113 ISAEHMIFGVGG-DDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLK 191 (291)
T ss_pred ccHHHHHhhccC-CChhHhhhhhhheeccceEEEeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHH
Confidence 00 00000 00000111111111 1111 156677999999996 999999998888888
Q ss_pred HHhC--CCcEEEEecCCCCCCChhHHHHHhcC
Q 029421 133 ILES--NIPVLASIPAPKSGRDIPAVARLRNH 162 (193)
Q Consensus 133 ~l~~--g~tvl~~~~~~~~tHd~~~~~~~~d~ 162 (193)
.-.+ |.||+.+ ||..+-++.+..+
T Consensus 192 eEce~RgatIVYA------THIFDGLe~Wpth 217 (291)
T KOG2355|consen 192 EECEQRGATIVYA------THIFDGLETWPTH 217 (291)
T ss_pred HHHhhcCcEEEEE------eeeccchhhcchh
Confidence 7543 9999999 8888888888777
No 408
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.47 E-value=5.9e-14 Score=110.38 Aligned_cols=50 Identities=16% Similarity=0.209 Sum_probs=37.6
Q ss_pred CCCCCEEEEecC---C-CccccccchHHHHHHHHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 105 GADTDLFVIDEV---G-KMELFSSSFFPAVLRILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 105 ~~~p~llllDEp---~-~LD~~~~~~~~~ll~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
+.+|+++|+||| + ++|+.+.. ..+++.+. + |.++|++ ||+ .++.++||+.
T Consensus 107 ~~~~sLvLLDEp~~gT~~lD~~~~~--~~il~~l~~~~~~~vlis------TH~-~el~~~~~~~ 162 (222)
T cd03285 107 ATENSLIIIDELGRGTSTYDGFGLA--WAIAEYIATQIKCFCLFA------THF-HELTALADEV 162 (222)
T ss_pred CCCCeEEEEecCcCCCChHHHHHHH--HHHHHHHHhcCCCeEEEE------ech-HHHHHHhhcC
Confidence 578999999999 4 68877653 33434443 3 8899999 996 7788899874
No 409
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.47 E-value=1e-13 Score=106.06 Aligned_cols=51 Identities=18% Similarity=0.265 Sum_probs=40.4
Q ss_pred CCCCCEEEEecC-CCccccccc-hHHHHHHHHh-C-CCcEEEEecCCCCCCChhHHHHHhcC
Q 029421 105 GADTDLFVIDEV-GKMELFSSS-FFPAVLRILE-S-NIPVLASIPAPKSGRDIPAVARLRNH 162 (193)
Q Consensus 105 ~~~p~llllDEp-~~LD~~~~~-~~~~ll~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~ 162 (193)
+.+|+++|+||| +|+|+.... ....+++.+. + +.++|++ ||+. ++.+++++
T Consensus 76 ~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~------TH~~-~l~~~~~~ 130 (185)
T smart00534 76 ATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFA------THYH-ELTKLADE 130 (185)
T ss_pred CCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEE------ecHH-HHHHHhhc
Confidence 458999999999 699998764 4567777664 3 7899999 9997 46677775
No 410
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.45 E-value=3.4e-13 Score=105.92 Aligned_cols=127 Identities=21% Similarity=0.168 Sum_probs=74.3
Q ss_pred cccCCCEEEEEcCCCCcHHHHHHHHHh-hcccCCCCeEEeceEchhhccCCceeeEEEeecCCcccccccccCCCCCCCC
Q 029421 2 AAGAGKCFLVTGPPGVGKTTLIMRVLE-SLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPLASINASSPESYR 80 (193)
Q Consensus 2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~g-l~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~ 80 (193)
++.+|++++|+||||+||||+++++++ .+.++.|..... .. -.++|..+-.. ....-+.+..
T Consensus 27 ~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a-~~--------~~~~~~~~i~~-~~~~~d~~~~------- 89 (222)
T cd03287 27 SAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPA-SS--------ATLSIFDSVLT-RMGASDSIQH------- 89 (222)
T ss_pred EecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEc-Cc--------eEEeccceEEE-EecCcccccc-------
Confidence 567899999999999999999999999 667888875432 11 12333222100 0000000000
Q ss_pred CCcccceeeehhhhhhhcccccccCCCCCEEEEecC-CCccccccc-hHHHHHHHHhC--CCcEEEEecCCCCCCChhHH
Q 029421 81 WPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEV-GKMELFSSS-FFPAVLRILES--NIPVLASIPAPKSGRDIPAV 156 (193)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp-~~LD~~~~~-~~~~ll~~l~~--g~tvl~~~~~~~~tHd~~~~ 156 (193)
... ....++.+.-.+ +.-+.++.++|+||| .|.++.... ....+++.+.+ +.++|++ ||+.+..
T Consensus 90 --~~S--tF~~e~~~~~~i--l~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~------TH~~~l~ 157 (222)
T cd03287 90 --GMS--TFMVELSETSHI--LSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFV------THYPSLG 157 (222)
T ss_pred --ccc--hHHHHHHHHHHH--HHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEE------cccHHHH
Confidence 000 000011100000 113567999999999 588876654 45677777654 7899999 9997655
Q ss_pred H
Q 029421 157 A 157 (193)
Q Consensus 157 ~ 157 (193)
.
T Consensus 158 ~ 158 (222)
T cd03287 158 E 158 (222)
T ss_pred H
Confidence 3
No 411
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.44 E-value=1.2e-13 Score=117.78 Aligned_cols=53 Identities=21% Similarity=0.239 Sum_probs=43.3
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD 62 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~ 62 (193)
|+|++|.+..|+||||||||+|+|+|.|+.|.-.|...+ ....++.|+||.|+
T Consensus 503 f~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~---------P~~~~mFYIPQRPY 555 (728)
T KOG0064|consen 503 FQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSI---------PRPNNIFYIPQRPY 555 (728)
T ss_pred EEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeec---------CCCcceEeccCCCc
Confidence 578999999999999999999999999999886664432 12345899999873
No 412
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.43 E-value=1.1e-13 Score=115.38 Aligned_cols=136 Identities=17% Similarity=0.271 Sum_probs=85.9
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhh--------cccCCCCeEEeceEchhhccCCceeeEEEeecCCcc---cccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLES--------LKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRR---APLA 69 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl--------~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~~~---~~~~ 69 (193)
|++++|++++++|+|||||||++++|+|. ++|++|.|.+--..+. +.+|....+.. +.++
T Consensus 404 L~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~---------a~iPge~Ep~f~~~tile 474 (593)
T COG2401 404 LEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVS---------ALIPGEYEPEFGEVTILE 474 (593)
T ss_pred eEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchh---------hccCcccccccCchhHHH
Confidence 57899999999999999999999999996 4678887766322211 12222111111 1111
Q ss_pred cccCCCCCCCCCCcccceeeehhhhhhhcccc----------cc------------cCCCCCEEEEecC-CCccccccch
Q 029421 70 SINASSPESYRWPTVGRYKVDVASFEAIALPE----------LQ------------VGADTDLFVIDEV-GKMELFSSSF 126 (193)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~------------l~~~p~llllDEp-~~LD~~~~~~ 126 (193)
.+ +...++...+.+.+.+.|+.+ ++ ++..|.+++.||- +-||+.+...
T Consensus 475 hl---------~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~r 545 (593)
T COG2401 475 HL---------RSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVR 545 (593)
T ss_pred HH---------hhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHH
Confidence 00 000111111223333333321 11 6789999999999 7999999876
Q ss_pred HHHHHHHHh-C-CCcEEEEecCCCCCCChhHHHHHh
Q 029421 127 FPAVLRILE-S-NIPVLASIPAPKSGRDIPAVARLR 160 (193)
Q Consensus 127 ~~~ll~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~ 160 (193)
+..-+..++ + |.|++++ ||+.+...+++
T Consensus 546 VArkiselaRe~giTlivv------ThrpEv~~AL~ 575 (593)
T COG2401 546 VARKISELAREAGITLIVV------THRPEVGNALR 575 (593)
T ss_pred HHHHHHHHHHHhCCeEEEE------ecCHHHHhccC
Confidence 666666665 4 9999999 99988777663
No 413
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=1.1e-13 Score=117.56 Aligned_cols=145 Identities=16% Similarity=0.162 Sum_probs=94.1
Q ss_pred cCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecCCccccccc-ccCCCCCCCCCC
Q 029421 4 GAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPLAS-INASSPESYRWP 82 (193)
Q Consensus 4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~~~~~~~~-~~~~~~~~~~~~ 82 (193)
+.-+.++++|+||+||||+++++.|-+.|..|.+.+.+ +.+++|.+|.-........+ +.+... ..+
T Consensus 388 e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~---------r~ri~~f~Qhhvd~l~~~v~~vd~~~~---~~p 455 (582)
T KOG0062|consen 388 ESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP---------RLRIKYFAQHHVDFLDKNVNAVDFMEK---SFP 455 (582)
T ss_pred chhhhhheeccCchhHHHHHHHHhccCCcccceeeecc---------cceecchhHhhhhHHHHHhHHHHHHHH---hCC
Confidence 33457899999999999999999999999999765432 56788888754322111111 000000 001
Q ss_pred cccceeeehhhhhhhcccc---------cc------------cCCCCCEEEEecC-CCccccccchHHHHHHHHhC-CCc
Q 029421 83 TVGRYKVDVASFEAIALPE---------LQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILES-NIP 139 (193)
Q Consensus 83 ~~~~~~~~~~~l~~~~l~~---------~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~-g~t 139 (193)
.. ..+.....+..+|++. ++ ...+|.+|+|||| +-||..+ +.++.+.++. +..
T Consensus 456 G~-~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~ds---l~AL~~Al~~F~GG 531 (582)
T KOG0062|consen 456 GK-TEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDS---LGALAKALKNFNGG 531 (582)
T ss_pred CC-CHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHH---HHHHHHHHHhcCCc
Confidence 10 0111223444444431 11 5689999999999 5899665 5666677776 778
Q ss_pred EEEEecCCCCCCChhHHHHHhcC----CCcEEEEe
Q 029421 140 VLASIPAPKSGRDIPAVARLRNH----PGATIFTL 170 (193)
Q Consensus 140 vl~~~~~~~~tHd~~~~~~~~d~----~~~~~~~~ 170 (193)
||+| |||.+++..+|++ .++.+.-+
T Consensus 532 Vv~V------SHd~~fi~~~c~E~Wvve~g~vt~i 560 (582)
T KOG0062|consen 532 VVLV------SHDEEFISSLCKELWVVEDGKVTPI 560 (582)
T ss_pred EEEE------ECcHHHHhhcCceeEEEcCCcEEee
Confidence 9999 9999999999998 34555443
No 414
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.42 E-value=2.7e-13 Score=123.18 Aligned_cols=126 Identities=16% Similarity=0.127 Sum_probs=72.6
Q ss_pred cccCC-CEEEEEcCCCCcHHHHHHHHHhh-cccCCCC-eEEeceEchhhccCCceeeEEEeecCCcccccccccCCCCCC
Q 029421 2 AAGAG-KCFLVTGPPGVGKTTLIMRVLES-LKASNPS-LKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPLASINASSPES 78 (193)
Q Consensus 2 ~i~~G-e~~~l~GpnGsGKSTLl~~i~gl-~~~~~G~-i~~~g~~~~~~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~ 78 (193)
++..+ ++++|+||||+|||||||.|+|. +.+..|. |.... ...++|..+... ....-+++.- .
T Consensus 317 ~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~---------~~~~~~~d~i~~-~i~~~~si~~----~ 382 (771)
T TIGR01069 317 NLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANE---------HSEIPYFEEIFA-DIGDEQSIEQ----N 382 (771)
T ss_pred EeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCc---------cccccchhheee-ecChHhHHhh----h
Confidence 45555 89999999999999999999998 5566662 21110 112233222110 0000000000 0
Q ss_pred CCCCcccceeeehhhhhhhcccccccCCCCCEEEEecC-CCccccccchH-HHHHHHHhC-CCcEEEEecCCCCCCChhH
Q 029421 79 YRWPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEV-GKMELFSSSFF-PAVLRILES-NIPVLASIPAPKSGRDIPA 155 (193)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp-~~LD~~~~~~~-~~ll~~l~~-g~tvl~~~~~~~~tHd~~~ 155 (193)
. ..+ .........+ +..+.+|.++|+||| +|+|+.....+ ..+++.+.+ |.++|++ ||+.+.
T Consensus 383 L-----Stf--S~~m~~~~~i--l~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viit------TH~~eL 447 (771)
T TIGR01069 383 L-----STF--SGHMKNISAI--LSKTTENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLIT------THYKEL 447 (771)
T ss_pred h-----hHH--HHHHHHHHHH--HHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEE------CChHHH
Confidence 0 000 0001011111 112358999999999 69999998655 688888876 9999999 999664
Q ss_pred H
Q 029421 156 V 156 (193)
Q Consensus 156 ~ 156 (193)
.
T Consensus 448 ~ 448 (771)
T TIGR01069 448 K 448 (771)
T ss_pred H
Confidence 3
No 415
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.42 E-value=4.8e-13 Score=123.10 Aligned_cols=49 Identities=14% Similarity=0.209 Sum_probs=44.2
Q ss_pred CCCEEEEecC-CCccccccchHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcC
Q 029421 107 DTDLFVIDEV-GKMELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNH 162 (193)
Q Consensus 107 ~p~llllDEp-~~LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~ 162 (193)
+|+++||||| +|||+..+..+.++++.+.+ |.|||++ +|+++.+. .||+
T Consensus 849 ~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi------~H~~~~i~-~aD~ 899 (924)
T TIGR00630 849 GRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVI------EHNLDVIK-TADY 899 (924)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE------eCCHHHHH-hCCE
Confidence 6999999999 69999999999999998876 9999999 99998774 6887
No 416
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.39 E-value=8.7e-13 Score=122.40 Aligned_cols=144 Identities=20% Similarity=0.246 Sum_probs=104.6
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHhhccc---CCCCeEEeceEchhhccCCceeeEEEeec--CCcccccccccCCCCC
Q 029421 3 AGAGKCFLVTGPPGVGKTTLIMRVLESLKA---SNPSLKVQGFYTGEIRQGGQRVGFEVVTL--DDRRAPLASINASSPE 77 (193)
Q Consensus 3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~---~~G~i~~~g~~~~~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~~ 77 (193)
+++|+.+.++||.|||||||+++++|-+.- ..|+|.++|.+..+... ++.++|.+|+- .+.+++.+.+.+...-
T Consensus 138 ~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~-~~~~aY~~e~DvH~p~lTVreTldFa~rc 216 (1391)
T KOG0065|consen 138 IKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP-KKTVAYNSEQDVHFPELTVRETLDFAARC 216 (1391)
T ss_pred EcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc-CceEEeccccccccceeEEeehhhHHHhc
Confidence 689999999999999999999999998653 35689999998765444 66789998865 5667777766554321
Q ss_pred CCC---CCccccee----eehhhhhhhcccccc-------------------------cCCCCCEEEEecC-CCcccccc
Q 029421 78 SYR---WPTVGRYK----VDVASFEAIALPELQ-------------------------VGADTDLFVIDEV-GKMELFSS 124 (193)
Q Consensus 78 ~~~---~~~~~~~~----~~~~~l~~~~l~~~~-------------------------l~~~p~llllDEp-~~LD~~~~ 124 (193)
... .+...+.+ .....++.+|+.... ++.+++++.+||+ +|||..+.
T Consensus 217 k~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~GLDSsTa 296 (1391)
T KOG0065|consen 217 KGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGLDSSTA 296 (1391)
T ss_pred cCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecccccccHHHH
Confidence 110 11111111 223456666765432 7899999999999 59999998
Q ss_pred chHHHHHHHHhC--CCcEEEEecCC
Q 029421 125 SFFPAVLRILES--NIPVLASIPAP 147 (193)
Q Consensus 125 ~~~~~ll~~l~~--g~tvl~~~~~~ 147 (193)
-++.+.++.+.+ +.|+++++++|
T Consensus 297 l~iik~lr~~a~~~~~t~~vsi~Q~ 321 (1391)
T KOG0065|consen 297 FQIIKALRQLAHITGATALVSILQP 321 (1391)
T ss_pred HHHHHHHHHHHhhhcceEEEEeccC
Confidence 888888888765 89999997653
No 417
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.35 E-value=5.3e-12 Score=102.39 Aligned_cols=49 Identities=14% Similarity=0.102 Sum_probs=43.6
Q ss_pred CCCEEEEecC-CCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcC
Q 029421 107 DTDLFVIDEV-GKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNH 162 (193)
Q Consensus 107 ~p~llllDEp-~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~ 162 (193)
+|+++++||| ++||+..+..+.++++.+..+.++|++ ||+... ..+||+
T Consensus 192 ~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~i------sH~~~~-~~~~d~ 241 (276)
T cd03241 192 AVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCI------THLPQV-AAMADN 241 (276)
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEE------echHHH-HHhcCc
Confidence 9999999999 699999999898888887668899999 999874 568887
No 418
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.34 E-value=1.2e-12 Score=90.91 Aligned_cols=66 Identities=21% Similarity=0.188 Sum_probs=49.4
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc--cCCceeeEEEeecCCcccccccccC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR--QGGQRVGFEVVTLDDRRAPLASINA 73 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~--~~~~~ig~~~q~~~~~~~~~~~~~~ 73 (193)
|++++|++++|+||||||||||++++. +|++.++|.+..... ...+..++.+|+.. ..+..+|+.+
T Consensus 10 l~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~lf-~~ti~~Ni~~ 77 (107)
T cd00820 10 VDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPELGL-EIRLRLNIFL 77 (107)
T ss_pred EEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechhcc-hhhHHhhcee
Confidence 568899999999999999999999986 789999999874332 33455677777632 3344555544
No 419
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.32 E-value=8e-12 Score=97.90 Aligned_cols=56 Identities=20% Similarity=0.210 Sum_probs=43.5
Q ss_pred CCCCCEEEEecC-CCccccccc-hHHHHHHHHhC--CCcEEEEecCCCCCCChhHHHHHhcCCCcE
Q 029421 105 GADTDLFVIDEV-GKMELFSSS-FFPAVLRILES--NIPVLASIPAPKSGRDIPAVARLRNHPGAT 166 (193)
Q Consensus 105 ~~~p~llllDEp-~~LD~~~~~-~~~~ll~~l~~--g~tvl~~~~~~~~tHd~~~~~~~~d~~~~~ 166 (193)
+.+|.++|+||| .|.++.... ....+++.+.+ +.++|++ ||+.+.+..++.+.+..
T Consensus 107 ~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~------TH~~el~~~~~~~~~v~ 166 (218)
T cd03286 107 ATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFS------THYHSLCDEFHEHGGVR 166 (218)
T ss_pred CCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEE------eccHHHHHHhhcCcceE
Confidence 578999999999 599998864 44454676654 8999999 99998888877654433
No 420
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=99.27 E-value=7.4e-11 Score=90.29 Aligned_cols=113 Identities=19% Similarity=0.207 Sum_probs=68.6
Q ss_pred cccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecCCcccccccccCCCCCCCCC
Q 029421 2 AAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPLASINASSPESYRW 81 (193)
Q Consensus 2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
.+++|+.++|+||||||||||+++|+|+++|+.|.+.+.+..-... .....+++.++...... .
T Consensus 21 ~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~-~~~~~~~~~~~~~~~~~---------------~ 84 (186)
T cd01130 21 AVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQL-PHPNWVRLVTRPGNVEG---------------S 84 (186)
T ss_pred HHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCC-CCCCEEEEEEecCCCCC---------------C
Confidence 4678999999999999999999999999999999888865322111 11223444433211000 0
Q ss_pred CcccceeeehhhhhhhcccccccCCCCCEEEEecCCCccccccchHHHHHHHHhCCCc-EEEEecC
Q 029421 82 PTVGRYKVDVASFEAIALPELQVGADTDLFVIDEVGKMELFSSSFFPAVLRILESNIP-VLASIPA 146 (193)
Q Consensus 82 ~~~~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp~~LD~~~~~~~~~ll~~l~~g~t-vl~~~~~ 146 (193)
... ...+.++ ..+-.+|+.++++|..+-+ ..++++....|.. ++.++|.
T Consensus 85 ~~~----~~~~~l~------~~lR~~pd~i~igEir~~e------a~~~~~a~~tGh~g~~~T~Ha 134 (186)
T cd01130 85 GEV----TMADLLR------SALRMRPDRIIVGEVRGGE------ALDLLQAMNTGHPGGMTTIHA 134 (186)
T ss_pred Ccc----CHHHHHH------HHhccCCCEEEEEccCcHH------HHHHHHHHhcCCCCceeeecC
Confidence 000 0011111 1134689999999984311 2345555545777 8888774
No 421
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.27 E-value=1.1e-11 Score=106.14 Aligned_cols=143 Identities=18% Similarity=0.221 Sum_probs=84.7
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc----------cCCceeeEEEeecCCccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR----------QGGQRVGFEVVTLDDRRAPLAS 70 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~----------~~~~~ig~~~q~~~~~~~~~~~ 70 (193)
|++.+|++++|+|+||+|||||+++|+|..+++.|.|.+.|+...+.. ..++.+.|+.+... ++..+
T Consensus 153 ~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~---~~~~r 229 (438)
T PRK07721 153 LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQ---PALMR 229 (438)
T ss_pred eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCC---CHHHH
Confidence 578999999999999999999999999999999999988765532111 12345666654211 11111
Q ss_pred ccCCC-----CCCCCCCcccceeeehhhhhhhcc--cccccCCCCCEEEEecC--C-CccccccchHHHHHHHHh--C-C
Q 029421 71 INASS-----PESYRWPTVGRYKVDVASFEAIAL--PELQVGADTDLFVIDEV--G-KMELFSSSFFPAVLRILE--S-N 137 (193)
Q Consensus 71 ~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~l--~~~~l~~~p~llllDEp--~-~LD~~~~~~~~~ll~~l~--~-g 137 (193)
..... .+.+.... .+--...+.+-++.. .+++ +.+.|| + |+|+.....+.++++.+. + |
T Consensus 230 ~~~~~~a~~iAEyfr~~g-~~Vll~~Dsltr~A~A~rEis-------l~~ge~P~~~G~dp~~~~~l~~ller~~~~~~G 301 (438)
T PRK07721 230 IKGAYTATAIAEYFRDQG-LNVMLMMDSVTRVAMAQREIG-------LAVGEPPTTKGYTPSVFAILPKLLERTGTNASG 301 (438)
T ss_pred HHHHHHHHHHHHHHHHCC-CcEEEEEeChHHHHHHHHHHH-------HhcCCCCccccCCHHHHHHHHHHHHHhcCCCCC
Confidence 00000 00000000 000001111111110 0111 123477 3 999999999999998876 3 7
Q ss_pred C-----cEEEEecCCCCCCChhHHHHHhcC
Q 029421 138 I-----PVLASIPAPKSGRDIPAVARLRNH 162 (193)
Q Consensus 138 ~-----tvl~~~~~~~~tHd~~~~~~~~d~ 162 (193)
. ||++. +||+++ .+||+
T Consensus 302 sIT~~~TVlv~------~hdm~e--~i~d~ 323 (438)
T PRK07721 302 SITAFYTVLVD------GDDMNE--PIADT 323 (438)
T ss_pred CeeeEEEEEEE------CCCCCc--hhhhh
Confidence 5 88999 999874 67886
No 422
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.24 E-value=5.4e-12 Score=99.76 Aligned_cols=131 Identities=17% Similarity=0.135 Sum_probs=68.6
Q ss_pred ccCCCEEEEEcCCCCcHHHH-HHHHHhhcccCCCCeEEeceEch-hhccCCceeeEEEeecCCcccccccccCCCCCCCC
Q 029421 3 AGAGKCFLVTGPPGVGKTTL-IMRVLESLKASNPSLKVQGFYTG-EIRQGGQRVGFEVVTLDDRRAPLASINASSPESYR 80 (193)
Q Consensus 3 i~~Ge~~~l~GpnGsGKSTL-l~~i~gl~~~~~G~i~~~g~~~~-~~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~ 80 (193)
+++|++++|+|+|||||||| ++.+++..++....+++...... ........+|+..+..... ..+...... +...
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~-~~l~~~~~~-~~~~- 97 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLIS-GKLLYIPVY-PLLS- 97 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhc-CcEEEEEec-cccc-
Confidence 67899999999999999999 68889887765555555543321 1111112344422211000 000000000 0000
Q ss_pred CCcccceeeehhhhhhhcccccccCCCCCEEEEecCC-Cc----cccccchHHHHHHHHhC-CCcEEEE
Q 029421 81 WPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEVG-KM----ELFSSSFFPAVLRILES-NIPVLAS 143 (193)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp~-~L----D~~~~~~~~~ll~~l~~-g~tvl~~ 143 (193)
............++.. -..+|+++++|||+ .+ |+.....+.++++.+++ |.|++++
T Consensus 98 -~~~~~~~~l~~il~~~------~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tvi~t 159 (230)
T PRK08533 98 -GNSEKRKFLKKLMNTR------RFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVIILT 159 (230)
T ss_pred -ChHHHHHHHHHHHHHH------HhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEEEEE
Confidence 0000000011111111 12579999999994 66 55555667777777766 8876665
No 423
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.23 E-value=7.8e-11 Score=97.01 Aligned_cols=39 Identities=21% Similarity=0.474 Sum_probs=34.7
Q ss_pred cccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEe
Q 029421 2 AAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQ 40 (193)
Q Consensus 2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~ 40 (193)
.+..|+.++|+||+|||||||+++|++.++++.|.+.+.
T Consensus 140 ~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ie 178 (308)
T TIGR02788 140 AIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIE 178 (308)
T ss_pred HhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEc
Confidence 356799999999999999999999999999988877664
No 424
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.20 E-value=4.2e-11 Score=109.25 Aligned_cols=53 Identities=17% Similarity=0.227 Sum_probs=42.8
Q ss_pred CCCCEEEEecC-CCccccccchH-HHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcCCC
Q 029421 106 ADTDLFVIDEV-GKMELFSSSFF-PAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNHPG 164 (193)
Q Consensus 106 ~~p~llllDEp-~~LD~~~~~~~-~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~~ 164 (193)
.+|.++|+||| .|+|+.....+ ..++..+.+ |.++|++ ||+.+.....+++..
T Consensus 406 ~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIit------TH~~el~~~~~~~~~ 461 (782)
T PRK00409 406 DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIAT------THYKELKALMYNREG 461 (782)
T ss_pred CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEE------CChHHHHHHHhcCCC
Confidence 68999999999 69999987544 667777766 8999999 999877776666644
No 425
>COG3910 Predicted ATPase [General function prediction only]
Probab=99.19 E-value=4.5e-11 Score=90.25 Aligned_cols=58 Identities=19% Similarity=0.320 Sum_probs=44.2
Q ss_pred CCCCEEEEecC-CCccccccchHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcCCCcEEEEeCCC
Q 029421 106 ADTDLFVIDEV-GKMELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNHPGATIFTLSPG 173 (193)
Q Consensus 106 ~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~~~~~~~~~~~ 173 (193)
.+.-+.+|||| ++|.|.-+-.+...++.+.+ |.-+|++ ||..- +.. .++..++.+..+
T Consensus 145 ~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiA------THSPi-LlA---iP~A~I~~~~~~ 204 (233)
T COG3910 145 NGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIA------THSPI-LLA---IPGAEIYEISES 204 (233)
T ss_pred ccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEE------ecChh-hee---CCCcEEEEEecC
Confidence 46679999999 89999988889999999987 9999999 88743 322 255555554443
No 426
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=99.15 E-value=2.8e-11 Score=103.44 Aligned_cols=43 Identities=14% Similarity=0.163 Sum_probs=39.1
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCC-CeEEeceEch
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNP-SLKVQGFYTG 45 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G-~i~~~g~~~~ 45 (193)
|++++||+++|+|||||||||||+ +|+..|++| +|.++|.++.
T Consensus 27 l~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~ 70 (504)
T TIGR03238 27 KELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSF 70 (504)
T ss_pred eeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECC
Confidence 578999999999999999999999 788888888 6999999874
No 427
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.13 E-value=6.4e-11 Score=99.25 Aligned_cols=139 Identities=19% Similarity=0.292 Sum_probs=80.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhhcccCCC-CeEEeceEchhhccCCceeeEEEeecCCccccccc------c--cCCCC
Q 029421 6 GKCFLVTGPPGVGKTTLIMRVLESLKASNP-SLKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPLAS------I--NASSP 76 (193)
Q Consensus 6 Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G-~i~~~g~~~~~~~~~~~~ig~~~q~~~~~~~~~~~------~--~~~~~ 76 (193)
.|++..+|.||.|||||+++++|.++|+.| +|... .++|=||...+......+ + .+...
T Consensus 367 SeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~l------------nVSykpqkispK~~~tvR~ll~~kIr~ay~~p 434 (592)
T KOG0063|consen 367 SEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPVL------------NVSYKPQKISPKREGTVRQLLHTKIRDAYMHP 434 (592)
T ss_pred ceeEEEEccCCcchhHHHHHHhcCCCCCccCccccc------------ceeccccccCccccchHHHHHHHHhHhhhcCH
Confidence 468999999999999999999999999876 33222 233333332111110000 0 00000
Q ss_pred CCCC---CCcccceeeeh-------hhhhhhcccccccCCCCCEEEEecC-CCccccccchHHHHHHHH--hCCCcEEEE
Q 029421 77 ESYR---WPTVGRYKVDV-------ASFEAIALPELQVGADTDLFVIDEV-GKMELFSSSFFPAVLRIL--ESNIPVLAS 143 (193)
Q Consensus 77 ~~~~---~~~~~~~~~~~-------~~l~~~~l~~~~l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l--~~g~tvl~~ 143 (193)
.+.. .+.......+. .-++++.+. +-+-..+++++.||| .-||...+......++.. +.++|-.+|
T Consensus 435 qF~~dvmkpL~ie~i~dqevq~lSggelQRval~-KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfilhakktafvV 513 (592)
T KOG0063|consen 435 QFVNDVMKPLQIENIIDQEVQGLSGGELQRVALA-LCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVV 513 (592)
T ss_pred HHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHH-HhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHhccchhhhh
Confidence 0000 00000000000 011111111 115577899999999 599999887777777663 448899999
Q ss_pred ecCCCCCCChhHHHHHhcCC
Q 029421 144 IPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 144 ~~~~~~tHd~~~~~~~~d~~ 163 (193)
.||+-.+..++|++
T Consensus 514 ------EhdfImaTYladrv 527 (592)
T KOG0063|consen 514 ------EHDFIMATYLADRV 527 (592)
T ss_pred ------hhHHHHHHhhccee
Confidence 99988888889984
No 428
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=1.2e-11 Score=104.11 Aligned_cols=51 Identities=14% Similarity=0.195 Sum_probs=45.6
Q ss_pred cCCCCCEEEEecC-CCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcC
Q 029421 104 VGADTDLFVIDEV-GKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNH 162 (193)
Q Consensus 104 l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~ 162 (193)
|..+|.+|+|||| +.||..+...+.+.++-|+ +|+++| |||-.++..+|..
T Consensus 427 LflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk--KTLLIV------SHDQgFLD~VCtd 478 (807)
T KOG0066|consen 427 LFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK--KTLLIV------SHDQGFLDSVCTD 478 (807)
T ss_pred HhcCceeeeecCCccccccceeeehhhHHhhhh--heeEEE------ecccchHHHHHHH
Confidence 6789999999999 5999998888888888886 499999 9999999999986
No 429
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.10 E-value=1.3e-10 Score=90.91 Aligned_cols=51 Identities=10% Similarity=0.175 Sum_probs=37.4
Q ss_pred CCCCCEEEEecC-CCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcC
Q 029421 105 GADTDLFVIDEV-GKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNH 162 (193)
Q Consensus 105 ~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~ 162 (193)
..++++++|||+ ++||...+..+..+++.+.++.-+|++ ||+. .....||+
T Consensus 156 ~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~------Th~~-~~~~~a~~ 207 (220)
T PF02463_consen 156 YKPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIIT------THNP-EMFEDADK 207 (220)
T ss_dssp CS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-------S-H-HHHTT-SE
T ss_pred cccccccccccccccccccccccccccccccccccccccc------cccc-cccccccc
Confidence 357899999999 799999999999999988767889999 9995 45556665
No 430
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.02 E-value=5e-10 Score=108.35 Aligned_cols=48 Identities=23% Similarity=0.293 Sum_probs=43.1
Q ss_pred CCEEEEecC-CCccccccchHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcC
Q 029421 108 TDLFVIDEV-GKMELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNH 162 (193)
Q Consensus 108 p~llllDEp-~~LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~ 162 (193)
+.+++|||| +||++.....+..+++.+.+ |.|||++ +||++.+.. ||+
T Consensus 1721 ~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~~g~tvivi------eH~~~~i~~-aD~ 1770 (1809)
T PRK00635 1721 PTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHSVIYI------DHDPALLKQ-ADY 1770 (1809)
T ss_pred CcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEE------eCCHHHHHh-CCE
Confidence 689999999 69999999999999998877 9999999 999887765 887
No 431
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.01 E-value=2.1e-10 Score=89.45 Aligned_cols=33 Identities=9% Similarity=0.090 Sum_probs=29.2
Q ss_pred cCCCCCEEEEecCC------CccccccchHHHHHHHHhC
Q 029421 104 VGADTDLFVIDEVG------KMELFSSSFFPAVLRILES 136 (193)
Q Consensus 104 l~~~p~llllDEp~------~LD~~~~~~~~~ll~~l~~ 136 (193)
++.+|+++++|||+ +||+..++.+.++++.++.
T Consensus 167 l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 167 LTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred HhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 77899999999995 6999999999999988764
No 432
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.01 E-value=1.1e-09 Score=88.64 Aligned_cols=46 Identities=11% Similarity=0.216 Sum_probs=35.5
Q ss_pred CCCCEEEEecC-CCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHh
Q 029421 106 ADTDLFVIDEV-GKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLR 160 (193)
Q Consensus 106 ~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~ 160 (193)
.+|+++++||| ++||+..+..+...++.+ + .++++ +|+...+..+|
T Consensus 209 ~~~~illlDEp~a~LD~~~~~~l~~~l~~~--~-q~ii~------~~~~~~~~~~~ 255 (270)
T cd03242 209 GEYPVLLLDDVLAELDLGRQAALLDAIEGR--V-QTFVT------TTDLADFDALW 255 (270)
T ss_pred CCCcEEEEcCcchhcCHHHHHHHHHHhhcC--C-CEEEE------eCCchhccchh
Confidence 69999999999 699999887777766654 3 46666 66767777766
No 433
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.97 E-value=3.3e-10 Score=83.52 Aligned_cols=34 Identities=29% Similarity=0.444 Sum_probs=28.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEec
Q 029421 8 CFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQG 41 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g 41 (193)
+++|.||||+||||+++.+++...+..+.+.+..
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 34 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 4789999999999999999999877666665544
No 434
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.96 E-value=4.6e-09 Score=81.18 Aligned_cols=34 Identities=26% Similarity=0.480 Sum_probs=27.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcccC-CCCeEEec
Q 029421 8 CFLVTGPPGVGKTTLIMRVLESLKAS-NPSLKVQG 41 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl~~~~-~G~i~~~g 41 (193)
++.|+||+||||||+++.+++.+.+. .|.|...+
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e 37 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIE 37 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEc
Confidence 78999999999999999999888653 45655443
No 435
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.95 E-value=1.2e-09 Score=97.58 Aligned_cols=50 Identities=14% Similarity=0.241 Sum_probs=42.8
Q ss_pred CCCCEEEEecC-CCccccccchHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcC
Q 029421 106 ADTDLFVIDEV-GKMELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNH 162 (193)
Q Consensus 106 ~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~ 162 (193)
....++||||| +||-....+.+.+++..+.. |-|||++ .|+++.+ +-||+
T Consensus 842 tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVI------EHNLdVI-k~AD~ 893 (935)
T COG0178 842 TGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVI------EHNLDVI-KTADW 893 (935)
T ss_pred CCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE------ecccceE-eecCE
Confidence 34589999999 69999988888899988876 9999999 9998755 46887
No 436
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.84 E-value=1.5e-08 Score=87.56 Aligned_cols=34 Identities=29% Similarity=0.462 Sum_probs=30.6
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCC
Q 029421 3 AGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPS 36 (193)
Q Consensus 3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~ 36 (193)
++.|.+++++||||+||||++..|++.+....|.
T Consensus 253 ~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~ 286 (484)
T PRK06995 253 LDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGA 286 (484)
T ss_pred ccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCC
Confidence 5678999999999999999999999998777764
No 437
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.78 E-value=4.8e-09 Score=80.19 Aligned_cols=53 Identities=21% Similarity=0.350 Sum_probs=37.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc--cCCceeeEEEeec
Q 029421 6 GKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR--QGGQRVGFEVVTL 61 (193)
Q Consensus 6 Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~--~~~~~ig~~~q~~ 61 (193)
|++++|+||||||||||+++|++...+ .+.+.+..+.... .....+++.+|++
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYITRPASAGSENHIALSEQEF 56 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEECCCccchhHHhheeEcHHHH
Confidence 789999999999999999999998765 4666665543221 1123455655543
No 438
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.77 E-value=2.6e-09 Score=81.23 Aligned_cols=44 Identities=18% Similarity=0.151 Sum_probs=34.5
Q ss_pred CCCCCEEEEecC-CCcc---ccccchHHHHHHHHhC-CCcEEEEecCCCCCCChh
Q 029421 105 GADTDLFVIDEV-GKME---LFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIP 154 (193)
Q Consensus 105 ~~~p~llllDEp-~~LD---~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~ 154 (193)
..+|+++++||| +.+| ...+..+..+++.+++ |.|+|++ +|+..
T Consensus 93 ~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v------~~~~~ 141 (187)
T cd01124 93 EFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLT------SEQSG 141 (187)
T ss_pred HhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEE------ecccc
Confidence 358999999999 4777 5555667778888776 9999999 77654
No 439
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.76 E-value=2.9e-08 Score=70.57 Aligned_cols=30 Identities=40% Similarity=0.717 Sum_probs=26.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhhcccCC
Q 029421 5 AGKCFLVTGPPGVGKTTLIMRVLESLKASN 34 (193)
Q Consensus 5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~ 34 (193)
.+..+.|+||+|+||||+++.++..+....
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~ 30 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPG 30 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCC
Confidence 367899999999999999999999876654
No 440
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.75 E-value=9.7e-09 Score=87.87 Aligned_cols=60 Identities=18% Similarity=0.149 Sum_probs=47.8
Q ss_pred cccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEec---eEchhh------ccCCceeeEEEeec
Q 029421 2 AAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQG---FYTGEI------RQGGQRVGFEVVTL 61 (193)
Q Consensus 2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g---~~~~~~------~~~~~~ig~~~q~~ 61 (193)
+|.+|++++|+||||||||||+++|+++.+|+.|.|.+.| .++... ...++.++|++|..
T Consensus 161 ~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd 229 (450)
T PRK06002 161 PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSD 229 (450)
T ss_pred eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCC
Confidence 5789999999999999999999999999999999888865 443211 11245789999854
No 441
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.74 E-value=1.2e-08 Score=77.51 Aligned_cols=36 Identities=22% Similarity=0.378 Sum_probs=31.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEc
Q 029421 5 AGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYT 44 (193)
Q Consensus 5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~ 44 (193)
+|++++|+|+|||||||++++|++++.+ +.++|.+.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~ 37 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDL 37 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCccc
Confidence 6999999999999999999999999866 57777665
No 442
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.73 E-value=8e-08 Score=80.33 Aligned_cols=38 Identities=24% Similarity=0.407 Sum_probs=30.0
Q ss_pred cCCCEEEEEcCCCCcHHHHHHHHHhhccc-CCCCeEEec
Q 029421 4 GAGKCFLVTGPPGVGKTTLIMRVLESLKA-SNPSLKVQG 41 (193)
Q Consensus 4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~-~~G~i~~~g 41 (193)
.++..+.|.||+||||||+++.+.+.+.+ ..+.|...+
T Consensus 120 ~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiE 158 (343)
T TIGR01420 120 RPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIE 158 (343)
T ss_pred hcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEc
Confidence 45779999999999999999999987763 456655443
No 443
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.73 E-value=1.1e-08 Score=80.81 Aligned_cols=39 Identities=28% Similarity=0.451 Sum_probs=33.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhhcccCCCC----eEEeceE
Q 029421 5 AGKCFLVTGPPGVGKTTLIMRVLESLKASNPS----LKVQGFY 43 (193)
Q Consensus 5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~----i~~~g~~ 43 (193)
+..+++|.||||||||||++.|+++++++.|. +.++++.
T Consensus 32 ~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~ 74 (229)
T PRK09270 32 RRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFH 74 (229)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEeccccc
Confidence 46799999999999999999999999999998 5555543
No 444
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.73 E-value=1e-08 Score=64.08 Aligned_cols=33 Identities=33% Similarity=0.530 Sum_probs=27.0
Q ss_pred cccC-CCEEEEEcCCCCcHHHHHHHHHhhcccCC
Q 029421 2 AAGA-GKCFLVTGPPGVGKTTLIMRVLESLKASN 34 (193)
Q Consensus 2 ~i~~-Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~ 34 (193)
++.+ |+++.|+|||||||||++.+|.=++-+..
T Consensus 18 ~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~~~ 51 (62)
T PF13555_consen 18 DFDPRGDVTLITGPNGSGKSTLLDAIQTVLYGNT 51 (62)
T ss_pred eecCCCcEEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence 3443 67999999999999999999987776543
No 445
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.72 E-value=1.3e-08 Score=78.66 Aligned_cols=28 Identities=36% Similarity=0.623 Sum_probs=26.4
Q ss_pred cCCCEEEEEcCCCCcHHHHHHHHHhhcc
Q 029421 4 GAGKCFLVTGPPGVGKTTLIMRVLESLK 31 (193)
Q Consensus 4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~~ 31 (193)
++|++++|+||||||||||+++|++.++
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5899999999999999999999999875
No 446
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.72 E-value=1.3e-08 Score=80.52 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=23.1
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHH
Q 029421 3 AGAGKCFLVTGPPGVGKTTLIMRVL 27 (193)
Q Consensus 3 i~~Ge~~~l~GpnGsGKSTLl~~i~ 27 (193)
+++|.++.|.|++|||||||...++
T Consensus 22 ~~~g~~~~i~G~~GsGKt~l~~~~~ 46 (234)
T PRK06067 22 IPFPSLILIEGDHGTGKSVLSQQFV 46 (234)
T ss_pred CcCCcEEEEECCCCCChHHHHHHHH
Confidence 5789999999999999999999884
No 447
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=98.72 E-value=1.5e-07 Score=78.95 Aligned_cols=29 Identities=28% Similarity=0.517 Sum_probs=26.3
Q ss_pred cCCCEEEEEcCCCCcHHHHHHHHHhhccc
Q 029421 4 GAGKCFLVTGPPGVGKTTLIMRVLESLKA 32 (193)
Q Consensus 4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~ 32 (193)
.+|..++|+||+||||||++++|++.+.+
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~ 160 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAE 160 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 46889999999999999999999999853
No 448
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.70 E-value=1.5e-08 Score=78.82 Aligned_cols=29 Identities=31% Similarity=0.429 Sum_probs=27.4
Q ss_pred cCCCEEEEEcCCCCcHHHHHHHHHhhccc
Q 029421 4 GAGKCFLVTGPPGVGKTTLIMRVLESLKA 32 (193)
Q Consensus 4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~ 32 (193)
++|++++|+||||||||||++.|++++++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 67999999999999999999999999876
No 449
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.70 E-value=1.9e-08 Score=79.24 Aligned_cols=58 Identities=24% Similarity=0.387 Sum_probs=36.3
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHH-hhcccCCCCeEEeceEc-hhhccCCceeeEEEee
Q 029421 3 AGAGKCFLVTGPPGVGKTTLIMRVL-ESLKASNPSLKVQGFYT-GEIRQGGQRVGFEVVT 60 (193)
Q Consensus 3 i~~Ge~~~l~GpnGsGKSTLl~~i~-gl~~~~~G~i~~~g~~~-~~~~~~~~~ig~~~q~ 60 (193)
+++|++++|.||+|||||||...++ ..+.+..+.+++..... .......+.+|+.++.
T Consensus 17 i~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~~~~~i~~~~~~~g~~~~~ 76 (229)
T TIGR03881 17 IPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEESRESIIRQAAQFGMDFEK 76 (229)
T ss_pred CcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccCCHHHHHHHHHHhCCCHHH
Confidence 6789999999999999999998665 23344444466655433 1222223345555543
No 450
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.69 E-value=1.8e-08 Score=82.12 Aligned_cols=38 Identities=16% Similarity=0.128 Sum_probs=32.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhhcc--cCCCCeEEeceE
Q 029421 6 GKCFLVTGPPGVGKTTLIMRVLESLK--ASNPSLKVQGFY 43 (193)
Q Consensus 6 Ge~~~l~GpnGsGKSTLl~~i~gl~~--~~~G~i~~~g~~ 43 (193)
-.++||.||||||||||+++|.+++. |++|.+.+.+.+
T Consensus 62 p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D 101 (290)
T TIGR00554 62 PYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTD 101 (290)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecc
Confidence 46899999999999999999999998 778887764443
No 451
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.69 E-value=2e-08 Score=78.52 Aligned_cols=41 Identities=20% Similarity=0.220 Sum_probs=34.9
Q ss_pred CEEEEecC-CCccccccchHHHHHHHHhC-CCcEEEEecCCCCCCChhH
Q 029421 109 DLFVIDEV-GKMELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIPA 155 (193)
Q Consensus 109 ~llllDEp-~~LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~ 155 (193)
.++++||| .+|.|..+..+.+++..... +.-||++ ||+...
T Consensus 259 ~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~Qviit------THSp~i 301 (303)
T PF13304_consen 259 SILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIIT------THSPFI 301 (303)
T ss_dssp SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEE------ES-GGG
T ss_pred eEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEe------Cccchh
Confidence 99999999 79999998888888888776 8999999 887543
No 452
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.68 E-value=7.1e-08 Score=89.18 Aligned_cols=51 Identities=18% Similarity=0.231 Sum_probs=37.9
Q ss_pred CCCCCEEEEecC-CCccccc-cchHHHHHHHHhC--CCcEEEEecCCCCCCChhHHHHHhcC
Q 029421 105 GADTDLFVIDEV-GKMELFS-SSFFPAVLRILES--NIPVLASIPAPKSGRDIPAVARLRNH 162 (193)
Q Consensus 105 ~~~p~llllDEp-~~LD~~~-~~~~~~ll~~l~~--g~tvl~~~~~~~~tHd~~~~~~~~d~ 162 (193)
+.++.++|+||| .|-++.. .....++++.+.+ +.++|++ ||+ .++..++++
T Consensus 684 at~~sLvllDE~GrGTs~~dg~aia~aile~l~~~~~~~~l~a------TH~-~el~~l~~~ 738 (854)
T PRK05399 684 ATERSLVLLDEIGRGTSTYDGLSIAWAVAEYLHDKIGAKTLFA------THY-HELTELEEK 738 (854)
T ss_pred CCCCcEEEEecCCCCCCcchhHHHHHHHHHHHHhcCCceEEEE------ech-HHHHHHhhh
Confidence 568899999999 3655544 3567788888765 5889999 888 556667664
No 453
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.67 E-value=2.3e-08 Score=82.61 Aligned_cols=57 Identities=25% Similarity=0.126 Sum_probs=44.3
Q ss_pred cCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--------ccCCceeeEEEee
Q 029421 4 GAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--------RQGGQRVGFEVVT 60 (193)
Q Consensus 4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--------~~~~~~ig~~~q~ 60 (193)
.+|++++++|||||||||++..|++.+.+..++|.+.+.+.... +..+..+.++++.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~ 176 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQK 176 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeC
Confidence 36899999999999999999999999998888999887765211 1223456677663
No 454
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.64 E-value=1.4e-08 Score=86.61 Aligned_cols=44 Identities=25% Similarity=0.328 Sum_probs=39.5
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYT 44 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~ 44 (193)
|++.+|+.++|+|+||+|||||+++|++..+++.|.|.+.|+..
T Consensus 151 l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg 194 (432)
T PRK06793 151 LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERG 194 (432)
T ss_pred ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCc
Confidence 57889999999999999999999999999999999887776553
No 455
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=98.63 E-value=2e-07 Score=86.05 Aligned_cols=48 Identities=17% Similarity=0.246 Sum_probs=41.5
Q ss_pred cCCCCCEEEEecC-CCc-cccccchHHHHHHHHhC-CCcEEEEecCCCCCCChhHHH
Q 029421 104 VGADTDLFVIDEV-GKM-ELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIPAVA 157 (193)
Q Consensus 104 l~~~p~llllDEp-~~L-D~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~ 157 (193)
+..+|.++++||| .+| |+..+..+.+.++.+++ |.+++++ ||++..+.
T Consensus 649 l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~------Tq~~~d~~ 699 (818)
T PRK13830 649 LTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLA------TQSISDAE 699 (818)
T ss_pred cCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEE------eCCHHHHh
Confidence 3579999999999 699 68888899999998876 9999999 99988775
No 456
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=98.60 E-value=3.9e-08 Score=77.26 Aligned_cols=36 Identities=25% Similarity=0.440 Sum_probs=29.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhccc--CCCCeEE---eceE
Q 029421 8 CFLVTGPPGVGKTTLIMRVLESLKA--SNPSLKV---QGFY 43 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl~~~--~~G~i~~---~g~~ 43 (193)
++||.||||||||||++.|++++.+ .++.+.+ +|+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~ 41 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL 41 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence 5899999999999999999999975 4566655 6554
No 457
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=98.59 E-value=6.5e-08 Score=82.81 Aligned_cols=62 Identities=16% Similarity=0.218 Sum_probs=49.0
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCC---CCeEEeceEchh-----hccCCceeeEEEeecC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASN---PSLKVQGFYTGE-----IRQGGQRVGFEVVTLD 62 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~---G~i~~~g~~~~~-----~~~~~~~ig~~~q~~~ 62 (193)
|++.+|++++|+|+||+|||||+++|+++.+++. |.|.+.|.++.. .....+..+++++...
T Consensus 170 l~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~~d~iv~g~Igerg~ev~e~~~~~~~~~~~~~tvVv~~~a 239 (455)
T PRK07960 170 LTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKDFIENILGAEGRARSVVIAAPA 239 (455)
T ss_pred ccccCCcEEEEECCCCCCccHHHHHHhCCCCCCEEEEEEEEECCeEHHHHHHhhcCcCCCceEEEEEECC
Confidence 5789999999999999999999999999999875 778788877633 1222355677887653
No 458
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.58 E-value=2.8e-07 Score=84.98 Aligned_cols=49 Identities=14% Similarity=0.284 Sum_probs=40.9
Q ss_pred cCCCCCEEEEecC-CCcc-ccccchHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHH
Q 029421 104 VGADTDLFVIDEV-GKME-LFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIPAVAR 158 (193)
Q Consensus 104 l~~~p~llllDEp-~~LD-~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~ 158 (193)
+..+|.++++||| ..+| +.....+.+.++.+++ |..++++ ||++.++..
T Consensus 639 ~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~------TQ~~~d~~~ 690 (800)
T PRK13898 639 LDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFA------TQSVEDASK 690 (800)
T ss_pred hcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEE------eCCHHHHHh
Confidence 4568999999999 6888 6667788899988876 8899999 899877654
No 459
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.57 E-value=4.9e-08 Score=83.42 Aligned_cols=35 Identities=23% Similarity=0.318 Sum_probs=32.1
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNP 35 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G 35 (193)
|++.+|++++|+|+||+|||||+++|+|..+++.+
T Consensus 150 l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~ 184 (434)
T PRK07196 150 LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVV 184 (434)
T ss_pred EeEecceEEEEECCCCCCccHHHHHHhcccCCCeE
Confidence 57899999999999999999999999999988753
No 460
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.56 E-value=5.9e-08 Score=81.78 Aligned_cols=53 Identities=13% Similarity=0.224 Sum_probs=45.6
Q ss_pred cCCCCCEEEEecC-CCccccccchHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcC
Q 029421 104 VGADTDLFVIDEV-GKMELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNH 162 (193)
Q Consensus 104 l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~ 162 (193)
.++++++.++||| +.||...+......++.+-. +.=||+| .||+..+..++|-
T Consensus 228 ~vq~advyMFDEpSsYLDVKQRLkaA~~IRsl~~p~~YiIVV------EHDLsVLDylSDF 282 (592)
T KOG0063|consen 228 CVQKADVYMFDEPSSYLDVKQRLKAAITIRSLINPDRYIIVV------EHDLSVLDYLSDF 282 (592)
T ss_pred hhhhcceeEecCCcccchHHHhhhHHHHHHHhhCCCCeEEEE------EeechHHHhhhcc
Confidence 5689999999999 69999988777788888766 8888999 9999988888875
No 461
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.55 E-value=9.7e-08 Score=72.32 Aligned_cols=33 Identities=33% Similarity=0.606 Sum_probs=28.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEE
Q 029421 6 GKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKV 39 (193)
Q Consensus 6 Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~ 39 (193)
|++++|+||||||||||++.|++.+.+. |.+.+
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~-~~~~~ 33 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGD-PRVHF 33 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcC-CcEEE
Confidence 6789999999999999999999987654 55554
No 462
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.52 E-value=4.1e-08 Score=79.54 Aligned_cols=32 Identities=22% Similarity=0.330 Sum_probs=27.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcccCCCCeEE
Q 029421 8 CFLVTGPPGVGKTTLIMRVLESLKASNPSLKV 39 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~ 39 (193)
+++|+|+||||||||++.|++++++..|.+..
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~ 32 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVIC 32 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEE
Confidence 58999999999999999999999988665433
No 463
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.52 E-value=2.1e-07 Score=66.71 Aligned_cols=27 Identities=44% Similarity=0.664 Sum_probs=24.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhhcc
Q 029421 5 AGKCFLVTGPPGVGKTTLIMRVLESLK 31 (193)
Q Consensus 5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~~ 31 (193)
.+..+.|+||+|+||||+++.++..+.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 477899999999999999999998875
No 464
>PRK01889 GTPase RsgA; Reviewed
Probab=98.51 E-value=1.2e-07 Score=79.68 Aligned_cols=57 Identities=18% Similarity=0.179 Sum_probs=44.3
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEee
Q 029421 3 AGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVT 60 (193)
Q Consensus 3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~ 60 (193)
+.+|++++|+|+||+|||||++.|+|...++.|+|.+++...... ...+.++++++.
T Consensus 192 L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~t-t~~~~l~~l~~~ 248 (356)
T PRK01889 192 LSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHT-TTHRELHPLPSG 248 (356)
T ss_pred hhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcch-hhhccEEEecCC
Confidence 567999999999999999999999999999999999876432111 123456666654
No 465
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.51 E-value=1.2e-07 Score=73.01 Aligned_cols=34 Identities=29% Similarity=0.455 Sum_probs=27.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceE
Q 029421 8 CFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFY 43 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~ 43 (193)
+++|+||||||||||+++|++++ ..|.+.+.+.+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D 34 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQD 34 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEec
Confidence 58999999999999999999998 34556555444
No 466
>PRK08149 ATP synthase SpaL; Validated
Probab=98.50 E-value=1.5e-07 Score=80.39 Aligned_cols=61 Identities=21% Similarity=0.285 Sum_probs=47.3
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCC---CCeEEeceEchhh----c--cCCceeeEEEeec
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASN---PSLKVQGFYTGEI----R--QGGQRVGFEVVTL 61 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~---G~i~~~g~~~~~~----~--~~~~~ig~~~q~~ 61 (193)
+++.+|++++|+|+||+|||||+++|++...++. |.|-..|.++... . ...+++++++...
T Consensus 146 l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~s 215 (428)
T PRK08149 146 LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATS 215 (428)
T ss_pred eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECC
Confidence 4688999999999999999999999999988876 6677777765321 1 1236778887654
No 467
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.50 E-value=1.2e-07 Score=73.16 Aligned_cols=55 Identities=22% Similarity=0.236 Sum_probs=40.4
Q ss_pred cCCCEEEEEcCCCCcHHHHHHHHHhhcccC-CCCeEEeceEchhhccCCceeeEEEee
Q 029421 4 GAGKCFLVTGPPGVGKTTLIMRVLESLKAS-NPSLKVQGFYTGEIRQGGQRVGFEVVT 60 (193)
Q Consensus 4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~-~G~i~~~g~~~~~~~~~~~~ig~~~q~ 60 (193)
.+|.+++|+|+||||||||.+.|++.+.+. .|.+.++|.++.... ...++|.+|+
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~--~~~~~~~~~~ 77 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGL--CSDLGFSDAD 77 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhh--hhcCCcCccc
Confidence 578999999999999999999999987654 357888886653211 1235666554
No 468
>PLN02796 D-glycerate 3-kinase
Probab=98.49 E-value=1.1e-07 Score=78.79 Aligned_cols=41 Identities=32% Similarity=0.575 Sum_probs=35.1
Q ss_pred cCCCE-----EEEEcCCCCcHHHHHHHHHhhcccC---CCCeEEeceEc
Q 029421 4 GAGKC-----FLVTGPPGVGKTTLIMRVLESLKAS---NPSLKVQGFYT 44 (193)
Q Consensus 4 ~~Ge~-----~~l~GpnGsGKSTLl~~i~gl~~~~---~G~i~~~g~~~ 44 (193)
++|+. ++|+|+||||||||++.|.+++++. .|.|.++|+..
T Consensus 93 ~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYL 141 (347)
T PLN02796 93 KDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYL 141 (347)
T ss_pred ccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCccc
Confidence 35665 9999999999999999999999874 57788888875
No 469
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.49 E-value=2e-07 Score=78.35 Aligned_cols=30 Identities=33% Similarity=0.507 Sum_probs=26.7
Q ss_pred cccCCCEEEEEcCCCCcHHHHHHHHHhhcc
Q 029421 2 AAGAGKCFLVTGPPGVGKTTLIMRVLESLK 31 (193)
Q Consensus 2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~ 31 (193)
.+++|.+++++||||+||||++..|++.+.
T Consensus 133 ~~~~g~ii~lvGptGvGKTTtiakLA~~~~ 162 (374)
T PRK14722 133 LMERGGVFALMGPTGVGKTTTTAKLAARCV 162 (374)
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357899999999999999999999998753
No 470
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.48 E-value=1.9e-07 Score=90.11 Aligned_cols=54 Identities=17% Similarity=0.215 Sum_probs=38.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHH----hhcccC-CCCeEEeceEchhhccCCceeeEEEee
Q 029421 7 KCFLVTGPPGVGKTTLIMRVL----ESLKAS-NPSLKVQGFYTGEIRQGGQRVGFEVVT 60 (193)
Q Consensus 7 e~~~l~GpnGsGKSTLl~~i~----gl~~~~-~G~i~~~g~~~~~~~~~~~~ig~~~q~ 60 (193)
.+++|+|||||||||++.+|. |..+|. .|.+.+.+..+.........+.+.|++
T Consensus 29 ~~~~I~G~NGaGKTTil~ai~~al~G~~~~~~~g~~~i~~~~~~~~~~~~a~V~l~F~~ 87 (1311)
T TIGR00606 29 PLTILVGPNGAGKTTIIECLKYICTGDFPPGTKGNTFVHDPKVAQETDVRAQIRLQFRD 87 (1311)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCceEecCCCcCccHhhhheeEEEEEc
Confidence 499999999999999999994 999985 688777665432222223445555543
No 471
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=98.47 E-value=1.1e-07 Score=78.51 Aligned_cols=43 Identities=23% Similarity=0.329 Sum_probs=38.1
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceE
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFY 43 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~ 43 (193)
|.+.+|+.++|+|+||+|||||+++|+|...++.|.+...|+.
T Consensus 64 ~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGer 106 (326)
T cd01136 64 LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGER 106 (326)
T ss_pred eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEecC
Confidence 4688999999999999999999999999999988877766643
No 472
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.47 E-value=1.4e-07 Score=80.52 Aligned_cols=44 Identities=20% Similarity=0.244 Sum_probs=40.6
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYT 44 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~ 44 (193)
|++.+|+.++|+|+||+|||||+++|++..+|+.|.|.+.|...
T Consensus 135 ~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~~~~gvi~~iGer~ 178 (418)
T TIGR03498 135 LPLCRGQRLGIFAGSGVGKSTLLSMLARNTDADVVVIALVGERG 178 (418)
T ss_pred ccccCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEeeec
Confidence 57899999999999999999999999999999999888888764
No 473
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=98.45 E-value=1.2e-07 Score=81.92 Aligned_cols=42 Identities=33% Similarity=0.520 Sum_probs=33.7
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCC-eEEeceEc
Q 029421 3 AGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPS-LKVQGFYT 44 (193)
Q Consensus 3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~-i~~~g~~~ 44 (193)
+.+|+++.|.|++|+|||||+..++.......+. +++.++..
T Consensus 91 i~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs 133 (454)
T TIGR00416 91 IVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEES 133 (454)
T ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCC
Confidence 5789999999999999999999998876655455 46666543
No 474
>PRK06893 DNA replication initiation factor; Validated
Probab=98.43 E-value=2.1e-06 Score=67.81 Aligned_cols=75 Identities=12% Similarity=0.076 Sum_probs=43.8
Q ss_pred CCCCEEEEecCCC--ccccccchHHHHHHHHhC-CCcEEEEecCCCCCCCh--hHH----HHHhcCCC-cEEEEeCCCCh
Q 029421 106 ADTDLFVIDEVGK--MELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDI--PAV----ARLRNHPG-ATIFTLSPGNR 175 (193)
Q Consensus 106 ~~p~llllDEp~~--LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~--~~~----~~~~d~~~-~~~~~~~~~~~ 175 (193)
.++++|++||+.. -+......+..++....+ |++++++ |++. ... ..++.|.. +.++.+.+++.
T Consensus 90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illi------ts~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~ 163 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLI------SADCSPHALSIKLPDLASRLTWGEIYQLNDLTD 163 (229)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEE------eCCCChHHccccchhHHHHHhcCCeeeCCCCCH
Confidence 4678999999943 244334567777777665 7777665 3432 111 24455532 45666777776
Q ss_pred hHHHHHHHHHH
Q 029421 176 DSLKDNIYYQL 186 (193)
Q Consensus 176 ~~l~~~~~~~~ 186 (193)
++..+-+.+..
T Consensus 164 e~~~~iL~~~a 174 (229)
T PRK06893 164 EQKIIVLQRNA 174 (229)
T ss_pred HHHHHHHHHHH
Confidence 65555544433
No 475
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.41 E-value=3.7e-07 Score=69.08 Aligned_cols=26 Identities=42% Similarity=0.755 Sum_probs=24.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhhcc
Q 029421 6 GKCFLVTGPPGVGKTTLIMRVLESLK 31 (193)
Q Consensus 6 Ge~~~l~GpnGsGKSTLl~~i~gl~~ 31 (193)
|++++|+||||||||||++.|++..+
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCc
Confidence 78999999999999999999999764
No 476
>PRK00098 GTPase RsgA; Reviewed
Probab=98.41 E-value=3.3e-07 Score=75.24 Aligned_cols=35 Identities=31% Similarity=0.511 Sum_probs=32.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEE
Q 029421 5 AGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKV 39 (193)
Q Consensus 5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~ 39 (193)
.|.+++++|+||+|||||++.|+|...+..|+|..
T Consensus 163 ~gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~ 197 (298)
T PRK00098 163 AGKVTVLAGQSGVGKSTLLNALAPDLELKTGEISE 197 (298)
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcCCCCcceec
Confidence 58899999999999999999999999999999876
No 477
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=98.40 E-value=1.7e-07 Score=80.13 Aligned_cols=44 Identities=27% Similarity=0.383 Sum_probs=39.2
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYT 44 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~ 44 (193)
|++.+|+.++|+|+||+|||||+++|++..+++.|.+.+.|..-
T Consensus 150 l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGeRg 193 (433)
T PRK07594 150 ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERG 193 (433)
T ss_pred eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECCCc
Confidence 57899999999999999999999999999999988777777643
No 478
>PRK09099 type III secretion system ATPase; Provisional
Probab=98.38 E-value=2.7e-07 Score=79.12 Aligned_cols=44 Identities=25% Similarity=0.355 Sum_probs=39.9
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYT 44 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~ 44 (193)
|++.+|++++|+|+||+|||||+++|++...++.|.+.+.|+..
T Consensus 158 ~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d~~vi~~iGer~ 201 (441)
T PRK09099 158 MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQCDVNVIALIGERG 201 (441)
T ss_pred eeecCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccCh
Confidence 46889999999999999999999999999999988888888653
No 479
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.38 E-value=3.3e-07 Score=74.79 Aligned_cols=34 Identities=35% Similarity=0.552 Sum_probs=31.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEE
Q 029421 6 GKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKV 39 (193)
Q Consensus 6 Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~ 39 (193)
+++++++|+||+|||||++.|.|...++.|++..
T Consensus 161 ~k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~ 194 (287)
T cd01854 161 GKTSVLVGQSGVGKSTLINALLPDLDLATGEISE 194 (287)
T ss_pred cceEEEECCCCCCHHHHHHHHhchhhccccceec
Confidence 6899999999999999999999999999998875
No 480
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=98.38 E-value=5.1e-07 Score=76.19 Aligned_cols=41 Identities=32% Similarity=0.528 Sum_probs=33.3
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCe-EEeceE
Q 029421 3 AGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSL-KVQGFY 43 (193)
Q Consensus 3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i-~~~g~~ 43 (193)
+.+|+++.|.|++|+|||||+..++..+....+.+ ++.++.
T Consensus 79 i~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EE 120 (372)
T cd01121 79 LVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEE 120 (372)
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCc
Confidence 56899999999999999999999998877665565 445544
No 481
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.38 E-value=1.7e-06 Score=80.31 Aligned_cols=49 Identities=16% Similarity=0.228 Sum_probs=42.1
Q ss_pred cCCCCCEEEEecC-CCc-cccccchHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHH
Q 029421 104 VGADTDLFVIDEV-GKM-ELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIPAVAR 158 (193)
Q Consensus 104 l~~~p~llllDEp-~~L-D~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~ 158 (193)
+..+|.++++||| .++ |+..+..+.+.++.+++ |.+++++ ||++.++..
T Consensus 684 l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~------TQs~~d~~~ 735 (852)
T PRK13891 684 LKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMA------TQSLSDAAN 735 (852)
T ss_pred hcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEE------eCCHHHHhh
Confidence 5679999999999 688 68888889999988876 8999999 999887754
No 482
>PRK05922 type III secretion system ATPase; Validated
Probab=98.38 E-value=3.2e-07 Score=78.47 Aligned_cols=43 Identities=23% Similarity=0.380 Sum_probs=38.0
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceE
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFY 43 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~ 43 (193)
+++.+|+.++|+|+||+|||||+++|++..+++.|.+...|..
T Consensus 152 l~I~~GqrigI~G~nG~GKSTLL~~Ia~~~~~d~gvi~liGer 194 (434)
T PRK05922 152 LTLGKGQRIGVFSEPGSGKSSLLSTIAKGSKSTINVIALIGER 194 (434)
T ss_pred EEEcCCcEEEEECCCCCChHHHHHHHhccCCCCceEEEEeCCC
Confidence 4688999999999999999999999999999988877665543
No 483
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=98.38 E-value=6.9e-06 Score=62.28 Aligned_cols=46 Identities=15% Similarity=0.274 Sum_probs=35.1
Q ss_pred HHHhCCCcEEEEecCCCCCCChhHHHHHhcC-CCcEEEEeCCCChhHHHHHHHH
Q 029421 132 RILESNIPVLASIPAPKSGRDIPAVARLRNH-PGATIFTLSPGNRDSLKDNIYY 184 (193)
Q Consensus 132 ~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~-~~~~~~~~~~~~~~~l~~~~~~ 184 (193)
..+++|..||+- -|+.-+.++.++ +++..+++.|++.++|.+++..
T Consensus 88 ~~~~~G~~vild-------Id~qGa~qvk~~~p~~v~IFi~pPs~eeL~~RL~~ 134 (191)
T COG0194 88 QALAEGKDVILD-------IDVQGALQVKKKMPNAVSIFILPPSLEELERRLKG 134 (191)
T ss_pred HHHhcCCeEEEE-------EehHHHHHHHHhCCCeEEEEEcCCCHHHHHHHHHc
Confidence 445568888886 377778877776 4677889999999999888754
No 484
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.37 E-value=3.2e-07 Score=78.88 Aligned_cols=44 Identities=23% Similarity=0.318 Sum_probs=38.7
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYT 44 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~ 44 (193)
|++.+|+.++|+|+||+|||||+++|++..+++.|.+...|+..
T Consensus 158 ~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~ 201 (440)
T TIGR01026 158 LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERG 201 (440)
T ss_pred cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeecc
Confidence 57899999999999999999999999999999888776666543
No 485
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.36 E-value=5e-07 Score=70.18 Aligned_cols=27 Identities=30% Similarity=0.373 Sum_probs=25.3
Q ss_pred cCCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421 4 GAGKCFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
.++.+++|.|+||||||||.+.|++.+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999999987
No 486
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=98.36 E-value=3.3e-07 Score=78.53 Aligned_cols=43 Identities=23% Similarity=0.328 Sum_probs=38.6
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceE
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFY 43 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~ 43 (193)
|++.+|+.++|+|+||+|||||+++|++...++.|.+...|..
T Consensus 140 ~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~~ 182 (422)
T TIGR02546 140 LTCGEGQRIGIFAGAGVGKSTLLGMIARGASADVNVIALIGER 182 (422)
T ss_pred ccccCCCEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEccC
Confidence 5788999999999999999999999999999998888776554
No 487
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=98.35 E-value=1e-06 Score=69.96 Aligned_cols=46 Identities=17% Similarity=0.133 Sum_probs=31.7
Q ss_pred CCCCCEEEEecC-CCcccccc-chHHHHHHHHhC--CCcEEEEecCCCCCCChhHH
Q 029421 105 GADTDLFVIDEV-GKMELFSS-SFFPAVLRILES--NIPVLASIPAPKSGRDIPAV 156 (193)
Q Consensus 105 ~~~p~llllDEp-~~LD~~~~-~~~~~ll~~l~~--g~tvl~~~~~~~~tHd~~~~ 156 (193)
+.+..++|+||+ .|-++... .....+++.+.+ +..++++ ||+.+..
T Consensus 120 ~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~------TH~~~l~ 169 (235)
T PF00488_consen 120 ATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIA------THFHELA 169 (235)
T ss_dssp --TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEE------ES-GGGG
T ss_pred cccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEE------eccchhH
Confidence 345679999999 58887775 567778877753 7888999 7776543
No 488
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.35 E-value=4.7e-07 Score=79.00 Aligned_cols=43 Identities=30% Similarity=0.444 Sum_probs=39.2
Q ss_pred cccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEc
Q 029421 2 AAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYT 44 (193)
Q Consensus 2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~ 44 (193)
.+..|++++++||||||||||++.|.|+++|.+|+..+.+..+
T Consensus 206 aa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i 248 (506)
T PRK09862 206 TAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAI 248 (506)
T ss_pred eccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchh
Confidence 5678999999999999999999999999999999998877655
No 489
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.35 E-value=8.9e-07 Score=70.27 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=20.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHh
Q 029421 6 GKCFLVTGPPGVGKTTLIMRVLE 28 (193)
Q Consensus 6 Ge~~~l~GpnGsGKSTLl~~i~g 28 (193)
|.+..|+||+|+|||||.-.++-
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~ 23 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLAL 23 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHH
Confidence 67889999999999999998863
No 490
>TIGR01070 mutS1 DNA mismatch repair protein MutS.
Probab=98.34 E-value=2.1e-06 Score=79.31 Aligned_cols=50 Identities=14% Similarity=0.240 Sum_probs=36.5
Q ss_pred CCCCCEEEEecC-CCcccccc-chHHHHHHHHhC--CCcEEEEecCCCCCCChhHHHHHhc
Q 029421 105 GADTDLFVIDEV-GKMELFSS-SFFPAVLRILES--NIPVLASIPAPKSGRDIPAVARLRN 161 (193)
Q Consensus 105 ~~~p~llllDEp-~~LD~~~~-~~~~~ll~~l~~--g~tvl~~~~~~~~tHd~~~~~~~~d 161 (193)
+.++.++|+||+ .|.++..- ....++++.+.+ |..++++ ||..+ +..+++
T Consensus 669 at~~sLvllDE~GrGT~~~dg~aia~ai~e~l~~~~~~~~~~~------TH~~e-L~~l~~ 722 (840)
T TIGR01070 669 ATENSLVLFDEIGRGTSTYDGLALAWAIAEYLHEHIRAKTLFA------THYFE-LTALEE 722 (840)
T ss_pred CCCCEEEEEccCCCCCChhHHHHHHHHHHHHHHhcCCCEEEEE------cCchH-HHHHhh
Confidence 567899999999 48887775 456777777654 7889999 78754 334544
No 491
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.34 E-value=5.6e-06 Score=72.35 Aligned_cols=29 Identities=31% Similarity=0.560 Sum_probs=25.9
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHhhcc
Q 029421 3 AGAGKCFLVTGPPGVGKTTLIMRVLESLK 31 (193)
Q Consensus 3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~ 31 (193)
+++|++++|+||+|+||||++..|+..+.
T Consensus 347 l~~G~vIaLVGPtGvGKTTtaakLAa~la 375 (559)
T PRK12727 347 LERGGVIALVGPTGAGKTTTIAKLAQRFA 375 (559)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46799999999999999999999988654
No 492
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.34 E-value=4.6e-06 Score=72.01 Aligned_cols=74 Identities=12% Similarity=0.151 Sum_probs=46.9
Q ss_pred CCCEEEEecC-CCccccc-cchHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcC----C-CcEEEEeCCCChhHH
Q 029421 107 DTDLFVIDEV-GKMELFS-SSFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNH----P-GATIFTLSPGNRDSL 178 (193)
Q Consensus 107 ~p~llllDEp-~~LD~~~-~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~----~-~~~~~~~~~~~~~~l 178 (193)
++++|++||+ ..++... +..+..++..+.+ |+.+|++. .|+...+..+.++ . .+.++.+.+++.+..
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIits-----d~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r 268 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICS-----DREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETR 268 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEEC-----CCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHH
Confidence 6899999999 4555443 4567777777765 77888871 3676666555544 2 355667777666544
Q ss_pred HHHHHHH
Q 029421 179 KDNIYYQ 185 (193)
Q Consensus 179 ~~~~~~~ 185 (193)
.+-+.++
T Consensus 269 ~~IL~~~ 275 (440)
T PRK14088 269 KKIARKM 275 (440)
T ss_pred HHHHHHH
Confidence 4444333
No 493
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.34 E-value=8.4e-06 Score=64.65 Aligned_cols=128 Identities=14% Similarity=0.153 Sum_probs=74.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecCCcccccccccCCCCCCCCCCcc
Q 029421 5 AGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPLASINASSPESYRWPTV 84 (193)
Q Consensus 5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (193)
.+..+.|.||+|||||+|++.++...... | .++.|++-+. ... .
T Consensus 44 ~~~~l~l~Gp~G~GKThLl~a~~~~~~~~-~----------------~~v~y~~~~~------~~~-----------~-- 87 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLLHAACAELSQR-G----------------RAVGYVPLDK------RAW-----------F-- 87 (235)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhC-C----------------CeEEEEEHHH------Hhh-----------h--
Confidence 45688999999999999999988653211 1 1233432210 000 0
Q ss_pred cceeeehhhhhhhcccccccCCCCCEEEEecCC--CccccccchHHHHHHHHhC-CC-cEEEEecCCCCCCChhH-----
Q 029421 85 GRYKVDVASFEAIALPELQVGADTDLFVIDEVG--KMELFSSSFFPAVLRILES-NI-PVLASIPAPKSGRDIPA----- 155 (193)
Q Consensus 85 ~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp~--~LD~~~~~~~~~ll~~l~~-g~-tvl~~~~~~~~tHd~~~----- 155 (193)
..+.++. ..+.+++++||.. .-++.....+..++..+.+ |+ ++|++ ++....
T Consensus 88 -----~~~~~~~--------~~~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~t------s~~~p~~l~~~ 148 (235)
T PRK08084 88 -----VPEVLEG--------MEQLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLIT------GDRPPRQLNLG 148 (235)
T ss_pred -----hHHHHHH--------hhhCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEe------CCCChHHcCcc
Confidence 0011111 1234799999993 4455555667777777655 64 78888 554321
Q ss_pred HHHHhcCC-CcEEEEeCCCChhHHHHHHHHHHH
Q 029421 156 VARLRNHP-GATIFTLSPGNRDSLKDNIYYQLT 187 (193)
Q Consensus 156 ~~~~~d~~-~~~~~~~~~~~~~~l~~~~~~~~~ 187 (193)
...+..|. .+.++.+.+++.+++.+.+.++..
T Consensus 149 ~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~ 181 (235)
T PRK08084 149 LPDLASRLDWGQIYKLQPLSDEEKLQALQLRAR 181 (235)
T ss_pred cHHHHHHHhCCceeeecCCCHHHHHHHHHHHHH
Confidence 24555663 456777777777766666654343
No 494
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.33 E-value=4.2e-07 Score=87.75 Aligned_cols=41 Identities=17% Similarity=0.178 Sum_probs=36.1
Q ss_pred cccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceE
Q 029421 2 AAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFY 43 (193)
Q Consensus 2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~ 43 (193)
.+.+| +++|+|+|||||||+|++|++++.|+.|.+.+++..
T Consensus 24 ~f~~~-~~~l~G~NGaGKSTll~ai~~~l~~~~~~~~f~~~~ 64 (1486)
T PRK04863 24 DLDEL-VTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTT 64 (1486)
T ss_pred EecCC-eEEEECCCCCCHHHHHHHHHccccCCCCeEEECCcc
Confidence 45554 999999999999999999999999999999888754
No 495
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=98.32 E-value=6.1e-07 Score=67.04 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=21.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhh
Q 029421 7 KCFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 7 e~~~l~GpnGsGKSTLl~~i~gl 29 (193)
-.++|+|+||||||||++.+.|.
T Consensus 15 ~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 15 PRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred cEEEEEccCCCCHHHHHHHHhcC
Confidence 35999999999999999999986
No 496
>PRK04296 thymidine kinase; Provisional
Probab=98.32 E-value=8.2e-06 Score=62.63 Aligned_cols=35 Identities=23% Similarity=0.385 Sum_probs=26.5
Q ss_pred CCCCEEEEecCCCccccccchHHHHHHHHhC-CCcEEEE
Q 029421 106 ADTDLFVIDEVGKMELFSSSFFPAVLRILES-NIPVLAS 143 (193)
Q Consensus 106 ~~p~llllDEp~~LD~~~~~~~~~ll~~l~~-g~tvl~~ 143 (193)
.+++++++||..-++. .++.++++.++. |++|+++
T Consensus 77 ~~~dvviIDEaq~l~~---~~v~~l~~~l~~~g~~vi~t 112 (190)
T PRK04296 77 EKIDCVLIDEAQFLDK---EQVVQLAEVLDDLGIPVICY 112 (190)
T ss_pred CCCCEEEEEccccCCH---HHHHHHHHHHHHcCCeEEEE
Confidence 4689999999844442 346677787665 9999999
No 497
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=98.31 E-value=4.8e-07 Score=76.72 Aligned_cols=38 Identities=26% Similarity=0.503 Sum_probs=33.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhhcccC---CCCeEEeceEc
Q 029421 7 KCFLVTGPPGVGKTTLIMRVLESLKAS---NPSLKVQGFYT 44 (193)
Q Consensus 7 e~~~l~GpnGsGKSTLl~~i~gl~~~~---~G~i~~~g~~~ 44 (193)
-++||.|++|||||||++.|.+++++. .|.|.+||+..
T Consensus 213 lIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfYL 253 (460)
T PLN03046 213 LVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFYL 253 (460)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCccC
Confidence 589999999999999999999999876 67788888875
No 498
>PLN02318 phosphoribulokinase/uridine kinase
Probab=98.31 E-value=5.8e-07 Score=79.16 Aligned_cols=36 Identities=28% Similarity=0.451 Sum_probs=32.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceE
Q 029421 7 KCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFY 43 (193)
Q Consensus 7 e~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~ 43 (193)
-+++|.||||||||||++.|++.+ |..|.|.+||+.
T Consensus 66 iIIGIaGpSGSGKTTLAk~LaglL-p~vgvIsmDdy~ 101 (656)
T PLN02318 66 ILVGVAGPSGAGKTVFTEKVLNFM-PSIAVISMDNYN 101 (656)
T ss_pred EEEEEECCCCCcHHHHHHHHHhhC-CCcEEEEEccee
Confidence 489999999999999999999997 567889999875
No 499
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.30 E-value=5.5e-07 Score=76.88 Aligned_cols=28 Identities=32% Similarity=0.563 Sum_probs=25.5
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421 3 AGAGKCFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
+++|++++++||||+||||+++.|++..
T Consensus 188 ~~~g~vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 188 IEQGGVYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4679999999999999999999999864
No 500
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.29 E-value=2.5e-06 Score=81.64 Aligned_cols=40 Identities=20% Similarity=0.297 Sum_probs=32.4
Q ss_pred cccCCCEEEEEcCCCCcHHHHHHHHHhhcc-cCCCCeEEec
Q 029421 2 AAGAGKCFLVTGPPGVGKTTLIMRVLESLK-ASNPSLKVQG 41 (193)
Q Consensus 2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~-~~~G~i~~~g 41 (193)
..+++++++|+|++|+|||||++.+++.+. ..+|.+++++
T Consensus 203 ~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~ 243 (1153)
T PLN03210 203 ESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDR 243 (1153)
T ss_pred ccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeec
Confidence 346788999999999999999999966654 4467777765
Done!