Query 029421
Match_columns 193
No_of_seqs 223 out of 1302
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 20:48:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029421.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029421hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fvq_A Fe(3+) IONS import ATP- 100.0 1.2E-35 4.1E-40 246.4 8.2 156 1-163 25-209 (359)
2 3tui_C Methionine import ATP-b 100.0 1.2E-35 4E-40 246.7 5.4 156 1-163 49-234 (366)
3 3rlf_A Maltose/maltodextrin im 100.0 1.2E-35 4E-40 248.1 4.7 156 1-163 24-204 (381)
4 2olj_A Amino acid ABC transpor 100.0 9.8E-36 3.4E-40 238.3 3.8 157 1-163 45-229 (263)
5 2yyz_A Sugar ABC transporter, 100.0 5.3E-35 1.8E-39 242.9 7.4 156 1-163 24-204 (359)
6 1v43_A Sugar-binding transport 100.0 1E-34 3.4E-39 242.3 8.3 156 1-163 32-212 (372)
7 1b0u_A Histidine permease; ABC 100.0 1.3E-35 4.4E-40 237.6 2.7 157 1-163 27-223 (262)
8 1oxx_K GLCV, glucose, ABC tran 100.0 6.5E-35 2.2E-39 242.2 6.9 156 1-163 26-211 (353)
9 1z47_A CYSA, putative ABC-tran 100.0 3.8E-35 1.3E-39 243.4 5.4 156 1-163 36-216 (355)
10 3gfo_A Cobalt import ATP-bindi 100.0 1E-35 3.5E-40 239.5 2.0 156 1-163 29-214 (275)
11 1g6h_A High-affinity branched- 100.0 2.9E-35 9.9E-40 235.0 3.5 157 1-163 28-223 (257)
12 2it1_A 362AA long hypothetical 100.0 7.7E-35 2.6E-39 242.2 4.6 156 1-163 24-204 (362)
13 3tif_A Uncharacterized ABC tra 100.0 6E-35 2.1E-39 230.3 3.7 156 1-163 26-215 (235)
14 2onk_A Molybdate/tungstate ABC 100.0 1.7E-34 5.7E-39 228.4 5.8 153 1-163 20-197 (240)
15 2pcj_A ABC transporter, lipopr 100.0 5.3E-35 1.8E-39 229.1 2.9 155 1-163 25-209 (224)
16 1ji0_A ABC transporter; ATP bi 100.0 1.4E-34 4.8E-39 228.8 5.3 155 1-163 27-209 (240)
17 2yz2_A Putative ABC transporte 100.0 1.9E-34 6.4E-39 231.3 5.7 154 1-163 28-208 (266)
18 1g29_1 MALK, maltose transport 100.0 1.1E-34 3.8E-39 242.2 4.2 156 1-163 24-210 (372)
19 1vpl_A ABC transporter, ATP-bi 100.0 5.6E-35 1.9E-39 233.1 2.1 156 1-163 36-216 (256)
20 4g1u_C Hemin import ATP-bindin 100.0 1.7E-34 6E-39 231.5 4.7 154 1-163 32-218 (266)
21 3d31_A Sulfate/molybdate ABC t 100.0 1.1E-34 3.7E-39 240.2 3.6 153 1-163 21-198 (348)
22 1sgw_A Putative ABC transporte 100.0 2.2E-34 7.6E-39 223.9 2.2 151 1-163 30-203 (214)
23 2ihy_A ABC transporter, ATP-bi 100.0 9E-34 3.1E-38 228.7 1.9 157 1-163 42-233 (279)
24 2qi9_C Vitamin B12 import ATP- 100.0 3.1E-33 1E-37 222.2 4.6 150 1-163 21-203 (249)
25 1mv5_A LMRA, multidrug resista 100.0 5.5E-32 1.9E-36 214.3 9.6 165 1-180 23-226 (243)
26 2ixe_A Antigen peptide transpo 100.0 2E-32 6.7E-37 220.1 5.1 156 1-163 40-226 (271)
27 2ff7_A Alpha-hemolysin translo 100.0 2.7E-32 9.2E-37 216.6 5.8 149 1-163 30-213 (247)
28 2nq2_C Hypothetical ABC transp 100.0 2.5E-32 8.5E-37 217.5 5.3 146 1-163 26-199 (253)
29 2d2e_A SUFC protein; ABC-ATPas 100.0 2.2E-32 7.6E-37 217.4 0.6 157 1-163 24-214 (250)
30 3nh6_A ATP-binding cassette SU 100.0 9E-32 3.1E-36 219.3 3.0 170 1-180 75-277 (306)
31 2zu0_C Probable ATP-dependent 100.0 6.5E-32 2.2E-36 216.7 1.5 157 1-163 41-235 (267)
32 2pjz_A Hypothetical protein ST 100.0 1.3E-31 4.4E-36 214.4 2.2 146 1-162 26-195 (263)
33 2ghi_A Transport protein; mult 100.0 1.2E-30 4.1E-35 208.5 4.0 148 1-163 41-223 (260)
34 2cbz_A Multidrug resistance-as 100.0 1.9E-30 6.5E-35 204.8 2.8 143 1-163 26-198 (237)
35 2pze_A Cystic fibrosis transme 100.0 5E-30 1.7E-34 201.4 2.8 145 1-163 29-199 (229)
36 3b5x_A Lipid A export ATP-bind 100.0 6.2E-29 2.1E-33 218.6 9.0 165 1-180 364-567 (582)
37 3gd7_A Fusion complex of cysti 100.0 1.4E-29 4.7E-34 212.4 2.5 147 1-163 42-223 (390)
38 3b60_A Lipid A export ATP-bind 99.9 6.2E-29 2.1E-33 218.6 4.5 165 1-180 364-567 (582)
39 3qf4_B Uncharacterized ABC tra 99.9 8.2E-29 2.8E-33 218.4 5.2 170 1-180 376-578 (598)
40 2i3b_A HCR-ntpase, human cance 99.9 7.5E-27 2.6E-31 178.2 14.5 179 6-189 1-187 (189)
41 2yl4_A ATP-binding cassette SU 99.9 1.8E-28 6.1E-33 216.2 6.3 152 1-163 365-551 (595)
42 4a82_A Cystic fibrosis transme 99.9 8.2E-29 2.8E-33 217.7 3.1 164 1-180 362-564 (578)
43 3qf4_A ABC transporter, ATP-bi 99.9 2.2E-28 7.6E-33 215.3 5.7 170 1-180 364-566 (587)
44 3ozx_A RNAse L inhibitor; ATP 99.9 4.9E-28 1.7E-32 210.8 7.3 143 1-163 289-456 (538)
45 2bbs_A Cystic fibrosis transme 99.9 9.4E-29 3.2E-33 200.3 1.9 142 1-163 59-228 (290)
46 1yqt_A RNAse L inhibitor; ATP- 99.9 1.4E-27 4.9E-32 208.1 6.0 141 1-163 307-472 (538)
47 3bk7_A ABC transporter ATP-bin 99.9 1.5E-27 5.1E-32 210.2 5.8 141 1-163 377-542 (607)
48 1yqt_A RNAse L inhibitor; ATP- 99.9 6.7E-27 2.3E-31 203.8 6.6 146 2-163 43-228 (538)
49 3bk7_A ABC transporter ATP-bin 99.9 9.8E-27 3.4E-31 205.0 6.1 146 2-163 113-298 (607)
50 3j16_B RLI1P; ribosome recycli 99.9 1.4E-25 4.7E-30 197.6 10.3 139 3-163 375-538 (608)
51 1ye8_A Protein THEP1, hypothet 99.9 2.6E-25 8.7E-30 168.2 10.3 164 8-186 2-176 (178)
52 3g5u_A MCG1178, multidrug resi 99.9 2.4E-26 8.2E-31 216.9 4.6 170 1-180 1054-1258(1284)
53 3ozx_A RNAse L inhibitor; ATP 99.9 6.1E-26 2.1E-30 197.6 5.3 150 3-163 22-207 (538)
54 3j16_B RLI1P; ribosome recycli 99.9 3.5E-26 1.2E-30 201.4 3.7 155 2-163 99-291 (608)
55 4f4c_A Multidrug resistance pr 99.9 5.9E-26 2E-30 214.8 2.5 167 1-181 1100-1305(1321)
56 3g5u_A MCG1178, multidrug resi 99.9 1.3E-25 4.4E-30 212.0 2.0 154 1-162 411-593 (1284)
57 3b85_A Phosphate starvation-in 99.9 8.2E-26 2.8E-30 174.9 0.1 136 3-158 19-163 (208)
58 4f4c_A Multidrug resistance pr 99.9 1.3E-24 4.4E-29 205.6 5.3 163 1-179 439-640 (1321)
59 3ux8_A Excinuclease ABC, A sub 99.9 1.1E-23 3.6E-28 188.0 6.6 154 1-163 39-273 (670)
60 2npi_A Protein CLP1; CLP1-PCF1 99.9 1.3E-23 4.5E-28 179.7 6.5 142 1-162 133-313 (460)
61 2iw3_A Elongation factor 3A; a 99.9 6.8E-24 2.3E-28 193.9 3.2 41 1-41 694-734 (986)
62 1znw_A Guanylate kinase, GMP k 99.9 3.2E-25 1.1E-29 171.0 -5.0 152 2-163 16-198 (207)
63 2iw3_A Elongation factor 3A; a 99.9 1.8E-22 6.1E-27 184.6 6.5 135 1-163 456-615 (986)
64 4gp7_A Metallophosphoesterase; 99.8 3.9E-23 1.3E-27 155.0 -2.3 129 1-159 4-165 (171)
65 2ehv_A Hypothetical protein PH 99.8 1.8E-22 6.1E-27 158.6 0.7 154 2-163 26-202 (251)
66 1tq4_A IIGP1, interferon-induc 99.8 9E-22 3.1E-26 166.1 -0.1 132 8-162 71-246 (413)
67 3b9q_A Chloroplast SRP recepto 99.8 1.4E-20 4.8E-25 153.2 4.1 161 1-170 95-279 (302)
68 3ux8_A Excinuclease ABC, A sub 99.8 3.5E-21 1.2E-25 171.7 0.5 53 104-163 558-615 (670)
69 1tf7_A KAIC; homohexamer, hexa 99.8 3.1E-21 1.1E-25 167.7 0.0 143 2-162 35-203 (525)
70 2pt7_A CAG-ALFA; ATPase, prote 99.8 8.7E-20 3E-24 150.2 6.1 118 1-163 166-284 (330)
71 2eyu_A Twitching motility prot 99.8 1.4E-19 4.7E-24 144.5 6.7 120 2-162 21-141 (261)
72 4aby_A DNA repair protein RECN 99.8 2E-20 6.7E-25 157.8 1.3 52 104-162 310-364 (415)
73 2vf7_A UVRA2, excinuclease ABC 99.8 1.2E-20 4E-25 170.9 -2.4 52 104-162 745-801 (842)
74 2og2_A Putative signal recogni 99.8 3.5E-19 1.2E-23 147.9 4.6 136 1-143 152-310 (359)
75 2r6f_A Excinuclease ABC subuni 99.7 2.2E-19 7.6E-24 163.4 2.9 52 104-162 860-916 (972)
76 3sop_A Neuronal-specific septi 99.7 3.1E-18 1.1E-22 137.2 6.6 133 8-145 4-148 (270)
77 2ygr_A Uvrabc system protein A 99.7 7.3E-19 2.5E-23 160.5 3.2 52 104-162 878-934 (993)
78 3pih_A Uvrabc system protein A 99.7 7.4E-18 2.5E-22 153.8 8.8 53 104-163 820-877 (916)
79 1s96_A Guanylate kinase, GMP k 99.7 5E-18 1.7E-22 132.1 5.8 125 3-158 13-145 (219)
80 4a74_A DNA repair and recombin 99.7 3.8E-19 1.3E-23 137.9 -2.7 145 3-162 22-193 (231)
81 1e69_A Chromosome segregation 99.7 4.8E-18 1.6E-22 139.2 3.0 51 106-163 240-291 (322)
82 2o8b_B DNA mismatch repair pro 99.7 2.1E-17 7.2E-22 152.8 7.4 131 6-165 789-924 (1022)
83 2w0m_A SSO2452; RECA, SSPF, un 99.7 6.5E-18 2.2E-22 130.9 3.1 149 2-162 19-185 (235)
84 3szr_A Interferon-induced GTP- 99.7 1.5E-17 5.2E-22 146.8 4.4 133 8-154 47-197 (608)
85 1z6g_A Guanylate kinase; struc 99.7 3E-18 1E-22 133.1 -0.3 151 1-162 18-203 (218)
86 2ewv_A Twitching motility prot 99.7 1.1E-16 3.8E-21 133.6 8.0 120 2-162 132-252 (372)
87 1rj9_A FTSY, signal recognitio 99.7 4.9E-17 1.7E-21 132.3 4.3 137 5-145 101-256 (304)
88 3jvv_A Twitching mobility prot 99.6 3.6E-16 1.2E-20 129.8 7.6 119 3-162 120-239 (356)
89 1cr0_A DNA primase/helicase; R 99.6 7.5E-17 2.6E-21 130.3 2.7 42 1-42 30-72 (296)
90 3qf7_A RAD50; ABC-ATPase, ATPa 99.6 1.6E-16 5.6E-21 132.3 4.8 50 106-162 302-353 (365)
91 3aez_A Pantothenate kinase; tr 99.6 4.6E-16 1.6E-20 127.0 7.1 102 3-121 87-209 (312)
92 3thx_A DNA mismatch repair pro 99.6 3.6E-16 1.2E-20 143.2 6.1 52 105-163 739-794 (934)
93 3asz_A Uridine kinase; cytidin 99.6 3.1E-17 1.1E-21 126.0 -1.8 31 2-32 2-32 (211)
94 1wb9_A DNA mismatch repair pro 99.6 4.6E-16 1.6E-20 140.8 5.2 129 4-162 605-738 (800)
95 2dpy_A FLII, flagellum-specifi 99.6 3.6E-17 1.2E-21 139.2 -1.9 147 1-162 152-324 (438)
96 1ewq_A DNA mismatch repair pro 99.6 3E-16 1E-20 141.3 4.0 124 3-160 574-704 (765)
97 1sxj_E Activator 1 40 kDa subu 99.6 3.7E-15 1.3E-19 122.7 10.0 160 7-186 37-206 (354)
98 1htw_A HI0065; nucleotide-bind 99.6 5.8E-16 2E-20 114.6 3.8 57 1-61 28-84 (158)
99 3thx_B DNA mismatch repair pro 99.6 3.9E-16 1.3E-20 142.6 3.4 133 1-163 668-805 (918)
100 2kjq_A DNAA-related protein; s 99.6 2E-15 7E-20 110.6 6.0 85 5-143 35-121 (149)
101 3ec2_A DNA replication protein 99.6 4.7E-16 1.6E-20 116.7 2.2 107 1-153 33-143 (180)
102 2jeo_A Uridine-cytidine kinase 99.6 2.5E-15 8.5E-20 118.4 6.4 49 1-61 20-68 (245)
103 2gza_A Type IV secretion syste 99.6 1.9E-15 6.6E-20 125.6 6.0 124 1-162 170-295 (361)
104 1tf7_A KAIC; homohexamer, hexa 99.5 1E-15 3.6E-20 133.0 1.7 140 2-162 277-436 (525)
105 1pzn_A RAD51, DNA repair and r 99.5 6.1E-16 2.1E-20 128.1 -0.4 137 2-156 127-289 (349)
106 2obl_A ESCN; ATPase, hydrolase 99.5 2.7E-16 9.1E-21 130.2 -2.8 145 1-162 66-235 (347)
107 3e70_C DPA, signal recognition 99.5 1.6E-15 5.5E-20 124.6 1.7 42 4-45 127-168 (328)
108 1lw7_A Transcriptional regulat 99.5 1.2E-16 4.1E-21 132.9 -5.8 147 1-162 163-337 (365)
109 1n0w_A DNA repair protein RAD5 99.5 1.6E-15 5.4E-20 118.4 -0.1 41 3-43 21-68 (243)
110 1nlf_A Regulatory protein REPA 99.5 1.4E-14 4.6E-19 116.2 4.1 137 3-156 27-184 (279)
111 2yhs_A FTSY, cell division pro 99.5 1.2E-14 4.1E-19 124.5 3.7 61 1-61 288-356 (503)
112 3qkt_A DNA double-strand break 99.5 8.9E-14 3.1E-18 114.6 6.9 52 104-162 269-322 (339)
113 2qnr_A Septin-2, protein NEDD5 99.4 6.7E-14 2.3E-18 113.6 4.7 130 9-154 21-168 (301)
114 2cvh_A DNA repair and recombin 99.4 1.4E-13 4.8E-18 105.7 2.9 38 3-42 17-54 (220)
115 2bbw_A Adenylate kinase 4, AK4 99.4 2.5E-15 8.5E-20 118.3 -7.4 38 5-42 26-66 (246)
116 1u0l_A Probable GTPase ENGC; p 99.4 3.6E-13 1.2E-17 109.2 4.4 60 2-61 165-229 (301)
117 2bdt_A BH3686; alpha-beta prot 99.3 1.2E-14 4.1E-19 109.7 -5.6 36 6-44 2-37 (189)
118 3lda_A DNA repair protein RAD5 99.3 1.3E-13 4.5E-18 115.9 -0.1 125 3-143 175-324 (400)
119 2qag_B Septin-6, protein NEDD5 99.3 2.4E-13 8.3E-18 114.8 1.3 135 1-143 35-215 (427)
120 3euj_A Chromosome partition pr 99.3 5.5E-13 1.9E-17 114.3 3.4 44 1-45 25-68 (483)
121 1nij_A Hypothetical protein YJ 99.3 1.1E-13 3.7E-18 113.2 -1.4 39 7-45 5-51 (318)
122 3tr0_A Guanylate kinase, GMP k 99.3 1.7E-12 5.9E-17 98.7 5.1 57 1-61 2-60 (205)
123 1qhl_A Protein (cell division 99.3 1.9E-13 6.4E-18 106.7 -0.9 58 2-60 24-91 (227)
124 2qm8_A GTPase/ATPase; G protei 99.3 9.1E-13 3.1E-17 108.5 3.1 61 1-61 50-116 (337)
125 1zp6_A Hypothetical protein AT 99.3 6.8E-13 2.3E-17 99.9 2.1 57 2-60 5-61 (191)
126 1ni3_A YCHF GTPase, YCHF GTP-b 99.2 1.4E-13 4.8E-18 115.4 -4.3 150 2-162 16-191 (392)
127 2dr3_A UPF0273 protein PH0284; 99.2 3.8E-12 1.3E-16 99.2 4.1 41 3-43 20-61 (247)
128 2qag_C Septin-7; cell cycle, c 99.2 6.2E-12 2.1E-16 106.3 5.5 125 9-146 34-176 (418)
129 2yv5_A YJEQ protein; hydrolase 99.2 4.6E-12 1.6E-16 102.8 3.8 59 2-61 161-224 (302)
130 1t9h_A YLOQ, probable GTPase E 99.2 1.4E-12 4.7E-17 106.1 0.7 60 2-61 169-232 (307)
131 1pui_A ENGB, probable GTP-bind 99.1 1.8E-12 6.3E-17 98.7 -2.4 39 1-39 21-64 (210)
132 2px0_A Flagellar biosynthesis 99.1 1E-10 3.5E-15 94.7 7.6 129 4-163 103-236 (296)
133 1sq5_A Pantothenate kinase; P- 99.1 3.6E-11 1.2E-15 97.7 4.8 41 4-44 78-123 (308)
134 2v9p_A Replication protein E1; 99.1 2.6E-11 8.9E-16 98.4 3.8 38 1-41 121-158 (305)
135 3lnc_A Guanylate kinase, GMP k 99.1 2.6E-11 8.8E-16 94.3 3.3 32 1-32 22-54 (231)
136 3c8u_A Fructokinase; YP_612366 99.1 1.8E-11 6E-16 93.9 2.0 41 4-44 20-63 (208)
137 2j41_A Guanylate kinase; GMP, 99.1 4.8E-11 1.6E-15 90.6 3.6 35 1-35 1-35 (207)
138 1lvg_A Guanylate kinase, GMP k 99.1 5.1E-11 1.7E-15 90.8 3.3 29 3-31 1-29 (198)
139 3a00_A Guanylate kinase, GMP k 99.0 1.1E-10 3.9E-15 87.8 4.3 30 6-35 1-30 (186)
140 2rcn_A Probable GTPase ENGC; Y 99.0 9.3E-11 3.2E-15 97.1 4.1 56 4-61 213-270 (358)
141 1p9r_A General secretion pathw 99.0 1.9E-10 6.3E-15 97.3 4.7 41 4-44 165-205 (418)
142 2oap_1 GSPE-2, type II secreti 99.0 1.1E-10 3.7E-15 101.1 3.1 42 2-43 256-297 (511)
143 4e22_A Cytidylate kinase; P-lo 99.0 4.1E-11 1.4E-15 94.7 -0.2 58 4-61 25-96 (252)
144 2f1r_A Molybdopterin-guanine d 99.0 3.9E-11 1.3E-15 89.7 -1.1 38 7-44 3-43 (171)
145 1ls1_A Signal recognition part 99.0 5.7E-10 2E-14 90.2 5.5 40 5-44 97-136 (295)
146 1udx_A The GTP-binding protein 98.9 3E-10 1E-14 95.9 3.2 30 1-30 152-181 (416)
147 4eun_A Thermoresistant glucoki 98.9 7.4E-10 2.5E-14 84.2 5.0 54 3-60 26-80 (200)
148 3kta_A Chromosome segregation 98.9 8.2E-10 2.8E-14 82.4 4.9 59 2-61 23-89 (182)
149 3uie_A Adenylyl-sulfate kinase 98.9 4.6E-10 1.6E-14 85.3 3.0 41 3-44 22-64 (200)
150 1oix_A RAS-related protein RAB 98.9 2E-10 6.9E-15 86.5 0.3 37 8-44 31-78 (191)
151 1kgd_A CASK, peripheral plasma 98.9 1.1E-09 3.9E-14 81.9 3.8 36 5-40 4-40 (180)
152 1rz3_A Hypothetical protein rb 98.9 1.2E-09 4.2E-14 83.1 3.8 42 3-44 19-60 (201)
153 2zr9_A Protein RECA, recombina 98.8 8.4E-10 2.9E-14 91.2 2.1 37 3-39 58-94 (349)
154 2vp4_A Deoxynucleoside kinase; 98.8 1.5E-09 5E-14 84.4 3.3 39 2-44 16-54 (230)
155 1f2t_B RAD50 ABC-ATPase; DNA d 98.8 1.2E-09 4E-14 79.7 2.4 52 104-162 78-131 (148)
156 3k1j_A LON protease, ATP-depen 98.8 4.3E-09 1.5E-13 92.8 5.1 55 2-59 56-111 (604)
157 1vma_A Cell division protein F 98.8 6.4E-09 2.2E-13 84.4 4.9 42 3-44 101-142 (306)
158 3m6a_A ATP-dependent protease 98.7 6.8E-09 2.3E-13 90.4 5.3 37 5-41 107-143 (543)
159 3cr8_A Sulfate adenylyltranfer 98.7 4.3E-09 1.5E-13 91.8 3.9 43 2-44 365-409 (552)
160 1knq_A Gluconate kinase; ALFA/ 98.7 8.5E-09 2.9E-13 76.3 4.7 37 4-44 6-42 (175)
161 2qby_A CDC6 homolog 1, cell di 98.7 3E-08 1E-12 81.4 8.3 75 107-187 128-211 (386)
162 1fnn_A CDC6P, cell division co 98.7 1.3E-08 4.6E-13 83.9 6.0 29 5-33 41-71 (389)
163 3tau_A Guanylate kinase, GMP k 98.7 1E-08 3.4E-13 78.5 4.2 29 4-32 6-34 (208)
164 3hr8_A Protein RECA; alpha and 98.7 6.4E-09 2.2E-13 86.1 3.2 41 3-43 58-99 (356)
165 3ney_A 55 kDa erythrocyte memb 98.7 1.1E-08 3.9E-13 77.9 4.2 29 3-31 16-44 (197)
166 2x8a_A Nuclear valosin-contain 98.7 7.5E-09 2.6E-13 82.7 3.3 55 2-60 42-98 (274)
167 3bos_A Putative DNA replicatio 98.7 1.2E-07 4.1E-12 72.8 9.5 28 5-32 51-78 (242)
168 1in4_A RUVB, holliday junction 98.7 2.4E-09 8.2E-14 87.7 -0.4 54 7-60 52-111 (334)
169 1zu4_A FTSY; GTPase, signal re 98.6 1.8E-08 6.2E-13 82.2 4.6 44 1-44 100-143 (320)
170 3tqc_A Pantothenate kinase; bi 98.6 2.3E-08 7.8E-13 81.7 4.5 33 8-40 94-128 (321)
171 1cke_A CK, MSSA, protein (cyti 98.6 4.2E-09 1.4E-13 81.1 -0.1 57 5-61 4-74 (227)
172 1sxj_C Activator 1 40 kDa subu 98.6 9.5E-08 3.2E-12 78.2 7.5 33 3-35 41-75 (340)
173 1kag_A SKI, shikimate kinase I 98.6 3.3E-08 1.1E-12 72.8 3.9 33 5-41 3-35 (173)
174 1w1w_A Structural maintenance 98.6 3.5E-08 1.2E-12 83.5 4.0 50 106-162 354-405 (430)
175 3kl4_A SRP54, signal recogniti 98.6 7.4E-08 2.5E-12 81.6 5.9 40 5-44 96-135 (433)
176 1ixz_A ATP-dependent metallopr 98.5 5.7E-08 1.9E-12 76.2 4.4 37 2-42 47-83 (254)
177 2z4s_A Chromosomal replication 98.5 1.1E-07 3.8E-12 80.8 6.4 73 107-185 194-275 (440)
178 2www_A Methylmalonic aciduria 98.5 5.6E-08 1.9E-12 80.2 4.4 41 5-45 73-113 (349)
179 2r6a_A DNAB helicase, replicat 98.5 4.6E-08 1.6E-12 83.4 3.9 40 3-42 200-240 (454)
180 2pez_A Bifunctional 3'-phospho 98.5 5.5E-08 1.9E-12 72.3 3.9 38 4-42 3-42 (179)
181 2dy1_A Elongation factor G; tr 98.5 2.7E-08 9.4E-13 88.6 2.5 43 1-44 4-48 (665)
182 2o5v_A DNA replication and rep 98.5 7.9E-08 2.7E-12 79.6 4.9 45 106-162 291-336 (359)
183 1iy2_A ATP-dependent metallopr 98.5 7.4E-08 2.5E-12 76.6 4.4 38 2-43 71-108 (278)
184 2ius_A DNA translocase FTSK; n 98.5 1E-07 3.5E-12 82.3 4.8 43 2-44 163-207 (512)
185 3pih_A Uvrabc system protein A 98.5 1.2E-07 4.1E-12 86.9 5.3 53 104-163 479-535 (916)
186 2f9l_A RAB11B, member RAS onco 98.5 6.5E-08 2.2E-12 72.9 2.9 36 8-43 7-53 (199)
187 3vaa_A Shikimate kinase, SK; s 98.5 9.6E-08 3.3E-12 72.3 3.9 30 1-30 20-49 (199)
188 1m7g_A Adenylylsulfate kinase; 98.4 5.3E-08 1.8E-12 74.4 1.8 40 2-41 21-62 (211)
189 2p67_A LAO/AO transport system 98.4 1.4E-07 4.7E-12 77.6 4.4 43 2-44 52-94 (341)
190 2qt1_A Nicotinamide riboside k 98.4 1.2E-07 3.9E-12 72.1 3.6 30 2-31 17-46 (207)
191 2r6f_A Excinuclease ABC subuni 98.4 2.4E-07 8.2E-12 84.9 5.7 52 104-162 519-574 (972)
192 1svm_A Large T antigen; AAA+ f 98.4 1.4E-07 4.7E-12 78.7 3.8 35 2-39 165-199 (377)
193 2e87_A Hypothetical protein PH 98.4 7.4E-07 2.5E-11 73.5 8.0 80 105-188 246-336 (357)
194 1njg_A DNA polymerase III subu 98.4 1.1E-06 3.8E-11 66.9 8.0 26 7-32 46-71 (250)
195 2yvu_A Probable adenylyl-sulfa 98.4 3.4E-07 1.2E-11 68.3 4.7 37 3-39 10-46 (186)
196 2ce7_A Cell division protein F 98.4 6.7E-07 2.3E-11 76.6 6.9 23 8-30 51-73 (476)
197 2ygr_A Uvrabc system protein A 98.3 2.6E-07 8.9E-12 84.9 4.5 53 104-163 536-592 (993)
198 1l8q_A Chromosomal replication 98.3 5.4E-07 1.9E-11 73.0 5.9 28 6-33 37-64 (324)
199 1jjv_A Dephospho-COA kinase; P 98.3 4E-07 1.4E-11 69.0 4.0 30 8-42 4-33 (206)
200 3nwj_A ATSK2; P loop, shikimat 98.3 1.9E-07 6.4E-12 73.7 2.0 30 1-30 40-72 (250)
201 2vf7_A UVRA2, excinuclease ABC 98.3 8.4E-07 2.9E-11 80.7 6.2 52 104-162 394-449 (842)
202 1f2t_A RAD50 ABC-ATPase; DNA d 98.2 5.1E-07 1.7E-11 65.5 2.9 24 7-30 24-47 (149)
203 4ad8_A DNA repair protein RECN 98.2 3.5E-07 1.2E-11 79.1 2.4 53 104-163 412-467 (517)
204 2qor_A Guanylate kinase; phosp 98.2 7.6E-07 2.6E-11 67.5 4.0 29 3-31 9-37 (204)
205 1odf_A YGR205W, hypothetical 3 98.2 5.7E-07 1.9E-11 72.4 3.2 30 4-33 29-58 (290)
206 1j8m_F SRP54, signal recogniti 98.2 7.4E-07 2.5E-11 71.9 3.4 39 6-44 98-136 (297)
207 3kta_B Chromosome segregation 98.2 1.3E-06 4.4E-11 65.1 4.4 51 106-163 85-136 (173)
208 2chg_A Replication factor C sm 98.2 1E-05 3.4E-10 60.8 9.5 71 106-184 101-172 (226)
209 2ffh_A Protein (FFH); SRP54, s 98.2 1.2E-06 4.2E-11 74.0 4.8 40 5-44 97-136 (425)
210 4eaq_A DTMP kinase, thymidylat 98.2 1.5E-06 5.1E-11 67.4 4.9 36 3-39 23-58 (229)
211 2v1u_A Cell division control p 98.2 1.4E-06 4.9E-11 71.5 4.8 76 106-187 129-215 (387)
212 3t61_A Gluconokinase; PSI-biol 98.2 1.5E-06 5.1E-11 65.6 4.4 33 6-42 18-50 (202)
213 3h4m_A Proteasome-activating n 98.2 3.2E-06 1.1E-10 67.0 6.5 28 3-30 48-75 (285)
214 2xau_A PRE-mRNA-splicing facto 98.1 5.2E-07 1.8E-11 81.7 1.7 32 3-34 106-137 (773)
215 1sxj_D Activator 1 41 kDa subu 98.1 2.1E-06 7.3E-11 69.8 5.2 73 106-186 132-205 (353)
216 2if2_A Dephospho-COA kinase; a 98.1 1.1E-06 3.9E-11 66.3 3.3 22 8-29 3-24 (204)
217 2b8t_A Thymidine kinase; deoxy 98.1 2.4E-05 8.1E-10 60.5 10.0 27 4-30 10-36 (223)
218 2qz4_A Paraplegin; AAA+, SPG7, 98.1 3.5E-05 1.2E-09 59.9 10.7 27 4-30 37-63 (262)
219 4ad8_A DNA repair protein RECN 98.1 8E-07 2.7E-11 76.9 1.2 28 1-29 56-83 (517)
220 1np6_A Molybdopterin-guanine d 98.0 3.5E-06 1.2E-10 62.7 4.3 28 6-33 6-33 (174)
221 3qks_A DNA double-strand break 98.0 2.1E-06 7.3E-11 65.3 2.9 24 7-30 24-47 (203)
222 1mky_A Probable GTP-binding pr 98.0 2.8E-06 9.6E-11 72.0 3.8 24 8-31 182-205 (439)
223 2p5t_B PEZT; postsegregational 98.0 3.3E-06 1.1E-10 66.3 3.8 39 3-43 29-67 (253)
224 1u94_A RECA protein, recombina 98.0 2.2E-06 7.7E-11 70.8 2.8 31 3-33 60-90 (356)
225 2orw_A Thymidine kinase; TMTK, 98.0 1.7E-05 5.7E-10 59.4 7.3 23 5-27 2-24 (184)
226 1y63_A LMAJ004144AAA protein; 98.0 4E-06 1.4E-10 62.5 3.9 29 1-29 5-33 (184)
227 2ohf_A Protein OLA1, GTP-bindi 98.0 2.6E-06 9E-11 71.3 3.0 39 3-41 19-68 (396)
228 2dhr_A FTSH; AAA+ protein, hex 98.0 4.4E-06 1.5E-10 72.0 4.5 37 3-43 63-99 (499)
229 3cm0_A Adenylate kinase; ATP-b 98.0 3E-06 1E-10 62.8 3.0 27 4-30 2-28 (186)
230 1sxj_A Activator 1 95 kDa subu 98.0 8.5E-05 2.9E-09 64.1 12.5 72 106-185 147-221 (516)
231 3auy_A DNA double-strand break 98.0 2.2E-06 7.4E-11 71.1 2.3 51 105-162 302-354 (371)
232 2qtf_A Protein HFLX, GTP-bindi 98.0 3.1E-06 1.1E-10 70.2 3.1 24 8-31 181-204 (364)
233 1jr3_A DNA polymerase III subu 98.0 3E-05 1E-09 63.4 8.9 26 8-33 40-65 (373)
234 3n70_A Transport activator; si 98.0 2.1E-05 7.3E-10 56.3 7.0 27 4-30 22-48 (145)
235 2gj8_A MNME, tRNA modification 98.0 4E-06 1.4E-10 61.6 3.1 27 4-30 2-28 (172)
236 1q3t_A Cytidylate kinase; nucl 98.0 5.3E-06 1.8E-10 64.3 3.9 27 4-30 14-40 (236)
237 3syl_A Protein CBBX; photosynt 97.9 3.7E-05 1.3E-09 61.4 8.8 28 5-32 66-93 (309)
238 3kb2_A SPBC2 prophage-derived 97.9 5.5E-06 1.9E-10 60.4 3.5 23 8-30 3-25 (173)
239 1qhx_A CPT, protein (chloramph 97.9 7.5E-06 2.6E-10 60.2 4.2 27 5-31 2-28 (178)
240 2wjg_A FEOB, ferrous iron tran 97.9 5.2E-06 1.8E-10 61.3 2.7 22 8-29 9-30 (188)
241 1vht_A Dephospho-COA kinase; s 97.9 1.3E-05 4.4E-10 61.1 4.8 32 5-41 3-34 (218)
242 4ag6_A VIRB4 ATPase, type IV s 97.9 1.2E-05 4E-10 67.0 4.7 37 5-41 34-70 (392)
243 2wji_A Ferrous iron transport 97.8 8.1E-06 2.8E-10 59.3 3.1 23 8-30 5-27 (165)
244 1kht_A Adenylate kinase; phosp 97.8 1E-05 3.4E-10 60.0 3.7 27 5-31 2-28 (192)
245 2rhm_A Putative kinase; P-loop 97.8 1E-05 3.5E-10 60.2 3.4 28 3-30 2-29 (193)
246 1xjc_A MOBB protein homolog; s 97.8 1.5E-05 5.2E-10 59.0 4.2 27 7-33 5-31 (169)
247 1gvn_B Zeta; postsegregational 97.8 1.6E-05 5.4E-10 63.7 4.5 36 4-41 31-66 (287)
248 2zej_A Dardarin, leucine-rich 97.8 7.3E-06 2.5E-10 60.7 2.3 23 8-30 4-26 (184)
249 2ga8_A Hypothetical 39.9 kDa p 97.8 9.3E-06 3.2E-10 66.9 3.1 30 2-31 18-49 (359)
250 2v54_A DTMP kinase, thymidylat 97.8 1.6E-05 5.4E-10 59.7 4.2 27 4-30 2-28 (204)
251 1ypw_A Transitional endoplasmi 97.8 1.2E-05 4.2E-10 73.0 4.1 31 1-31 233-263 (806)
252 1uf9_A TT1252 protein; P-loop, 97.8 1.8E-05 6.1E-10 59.3 4.3 32 6-42 8-39 (203)
253 3iij_A Coilin-interacting nucl 97.8 1.4E-05 4.7E-10 59.0 3.6 28 3-30 8-35 (180)
254 3r20_A Cytidylate kinase; stru 97.8 1.3E-05 4.4E-10 62.4 3.5 25 6-30 9-33 (233)
255 1gtv_A TMK, thymidylate kinase 97.8 3.9E-06 1.3E-10 63.6 0.4 26 8-33 2-27 (214)
256 3lw7_A Adenylate kinase relate 97.8 1.4E-05 4.6E-10 58.1 3.2 20 7-26 2-21 (179)
257 2jaq_A Deoxyguanosine kinase; 97.8 1.7E-05 5.7E-10 59.4 3.7 23 8-30 2-24 (205)
258 3cf0_A Transitional endoplasmi 97.8 1.7E-05 5.7E-10 63.8 3.8 28 3-30 46-73 (301)
259 1w1w_A Structural maintenance 97.8 1.5E-05 5.1E-10 67.2 3.7 33 2-34 22-54 (430)
260 1ex7_A Guanylate kinase; subst 97.8 1.6E-05 5.6E-10 59.8 3.5 23 8-30 3-25 (186)
261 3ice_A Transcription terminati 97.8 1.6E-05 5.5E-10 66.3 3.8 32 1-32 169-200 (422)
262 1xp8_A RECA protein, recombina 97.7 1.7E-05 5.9E-10 65.7 3.9 29 3-31 71-99 (366)
263 1via_A Shikimate kinase; struc 97.7 1.5E-05 5E-10 58.7 3.1 23 8-30 6-28 (175)
264 2ze6_A Isopentenyl transferase 97.7 1.6E-05 5.3E-10 62.5 3.4 23 8-30 3-25 (253)
265 1xx6_A Thymidine kinase; NESG, 97.7 0.00012 4.1E-09 55.2 8.2 27 4-30 6-32 (191)
266 1nn5_A Similar to deoxythymidy 97.7 1.9E-05 6.6E-10 59.6 3.6 29 3-31 6-34 (215)
267 3auy_A DNA double-strand break 97.7 1.3E-05 4.4E-10 66.4 2.7 25 3-28 23-47 (371)
268 2wwf_A Thymidilate kinase, put 97.7 2.1E-05 7.3E-10 59.3 3.7 28 4-31 8-35 (212)
269 2plr_A DTMP kinase, probable t 97.7 2.2E-05 7.6E-10 59.0 3.7 28 5-32 3-30 (213)
270 2c95_A Adenylate kinase 1; tra 97.7 2E-05 6.9E-10 58.6 3.5 27 4-30 7-33 (196)
271 3te6_A Regulatory protein SIR3 97.7 7.7E-05 2.6E-09 60.6 7.1 76 106-189 131-214 (318)
272 3trf_A Shikimate kinase, SK; a 97.7 2.3E-05 7.8E-10 58.0 3.7 26 5-30 4-29 (185)
273 1ly1_A Polynucleotide kinase; 97.7 2E-05 7E-10 57.7 3.4 22 7-28 3-24 (181)
274 1lv7_A FTSH; alpha/beta domain 97.7 2.8E-05 9.7E-10 60.7 4.0 25 6-30 45-69 (257)
275 1ega_A Protein (GTP-binding pr 97.7 2.1E-05 7.1E-10 63.4 3.3 24 6-29 8-31 (301)
276 3lxx_A GTPase IMAP family memb 97.7 2.5E-05 8.7E-10 60.3 3.6 28 8-35 31-58 (239)
277 3t34_A Dynamin-related protein 97.7 2.5E-05 8.4E-10 64.4 3.7 31 8-38 36-68 (360)
278 4fcw_A Chaperone protein CLPB; 97.7 3E-05 1E-09 61.9 4.0 31 7-37 48-78 (311)
279 1tev_A UMP-CMP kinase; ploop, 97.7 2.7E-05 9.1E-10 57.8 3.4 26 5-30 2-27 (196)
280 3ake_A Cytidylate kinase; CMP 97.6 2.9E-05 9.9E-10 58.3 3.4 23 8-30 4-26 (208)
281 2vli_A Antibiotic resistance p 97.6 2.2E-05 7.6E-10 57.8 2.7 27 4-30 3-29 (183)
282 1sxj_B Activator 1 37 kDa subu 97.6 0.00012 4E-09 58.5 7.1 71 107-185 107-178 (323)
283 2bwj_A Adenylate kinase 5; pho 97.6 2E-05 6.9E-10 58.8 2.2 27 4-30 10-36 (199)
284 3vfd_A Spastin; ATPase, microt 97.6 0.00031 1E-08 58.3 9.5 25 5-29 147-171 (389)
285 1jal_A YCHF protein; nucleotid 97.6 4.4E-05 1.5E-09 63.1 4.3 36 6-41 2-48 (363)
286 2w58_A DNAI, primosome compone 97.6 6.1E-05 2.1E-09 56.5 4.7 27 7-33 55-81 (202)
287 1nks_A Adenylate kinase; therm 97.6 3.3E-05 1.1E-09 57.2 3.2 24 8-31 3-26 (194)
288 2zan_A Vacuolar protein sortin 97.6 0.00041 1.4E-08 58.8 10.3 26 5-30 166-191 (444)
289 1f6b_A SAR1; gtpases, N-termin 97.6 2.2E-05 7.6E-10 58.9 2.2 24 4-28 24-47 (198)
290 1aky_A Adenylate kinase; ATP:A 97.6 4.5E-05 1.5E-09 58.2 3.8 27 4-30 2-28 (220)
291 2z0h_A DTMP kinase, thymidylat 97.6 4E-05 1.4E-09 57.1 3.4 25 8-32 2-26 (197)
292 2cdn_A Adenylate kinase; phosp 97.6 5.4E-05 1.8E-09 56.9 3.9 26 5-30 19-44 (201)
293 1qf9_A UMP/CMP kinase, protein 97.6 5E-05 1.7E-09 56.2 3.6 26 5-30 5-30 (194)
294 3u61_B DNA polymerase accessor 97.6 0.00021 7.3E-09 57.5 7.7 64 106-177 104-169 (324)
295 1zd8_A GTP:AMP phosphotransfer 97.5 4.8E-05 1.6E-09 58.4 3.4 27 4-30 5-31 (227)
296 1m2o_B GTP-binding protein SAR 97.5 4E-05 1.4E-09 57.0 2.8 22 8-29 25-46 (190)
297 3co5_A Putative two-component 97.5 2.6E-05 8.9E-10 55.7 1.6 37 107-143 75-112 (143)
298 3fb4_A Adenylate kinase; psych 97.5 5.4E-05 1.9E-09 57.4 3.4 23 8-30 2-24 (216)
299 1zak_A Adenylate kinase; ATP:A 97.5 5.2E-05 1.8E-09 57.9 3.2 27 4-30 3-29 (222)
300 1ukz_A Uridylate kinase; trans 97.5 6.5E-05 2.2E-09 56.4 3.7 26 5-30 14-39 (203)
301 2iyv_A Shikimate kinase, SK; t 97.5 5.3E-05 1.8E-09 56.0 3.1 25 6-30 2-26 (184)
302 2pbr_A DTMP kinase, thymidylat 97.5 5.9E-05 2E-09 55.9 3.4 24 8-31 2-25 (195)
303 1v5w_A DMC1, meiotic recombina 97.5 9.9E-05 3.4E-09 60.5 5.0 27 3-29 119-145 (343)
304 3k53_A Ferrous iron transport 97.5 5.1E-05 1.7E-09 59.9 3.1 23 8-30 5-27 (271)
305 3a4m_A L-seryl-tRNA(SEC) kinas 97.5 6.2E-05 2.1E-09 59.2 3.5 28 4-31 2-29 (260)
306 1e6c_A Shikimate kinase; phosp 97.5 5.8E-05 2E-09 55.0 3.2 24 7-30 3-26 (173)
307 1zuh_A Shikimate kinase; alpha 97.5 7E-05 2.4E-09 54.6 3.5 24 7-30 8-31 (168)
308 3llm_A ATP-dependent RNA helic 97.5 4.4E-05 1.5E-09 59.0 2.5 27 3-29 73-99 (235)
309 1iqp_A RFCS; clamp loader, ext 97.5 0.00024 8.1E-09 56.8 6.8 23 8-30 48-70 (327)
310 3ihw_A Centg3; RAS, centaurin, 97.5 9.3E-05 3.2E-09 54.8 4.1 22 8-29 22-43 (184)
311 3dl0_A Adenylate kinase; phosp 97.5 7.4E-05 2.5E-09 56.7 3.6 23 8-30 2-24 (216)
312 2j9r_A Thymidine kinase; TK1, 97.5 0.00063 2.2E-08 52.1 8.8 27 4-30 26-52 (214)
313 2qag_A Septin-2, protein NEDD5 97.5 4E-05 1.4E-09 63.3 2.2 29 9-37 40-68 (361)
314 3tlx_A Adenylate kinase 2; str 97.5 7.5E-05 2.6E-09 58.1 3.6 27 4-30 27-53 (243)
315 2chq_A Replication factor C sm 97.5 0.00011 3.8E-09 58.6 4.7 23 8-30 40-62 (319)
316 2pt5_A Shikimate kinase, SK; a 97.5 8.1E-05 2.8E-09 54.0 3.5 23 8-30 2-24 (168)
317 1uj2_A Uridine-cytidine kinase 97.4 8.5E-05 2.9E-09 58.0 3.6 24 7-30 23-46 (252)
318 1a7j_A Phosphoribulokinase; tr 97.4 3.7E-05 1.3E-09 61.6 1.6 27 5-31 4-30 (290)
319 2grj_A Dephospho-COA kinase; T 97.4 8.2E-05 2.8E-09 56.1 3.4 24 7-30 13-36 (192)
320 2ged_A SR-beta, signal recogni 97.4 8.3E-05 2.9E-09 54.9 3.3 23 8-30 50-72 (193)
321 2z43_A DNA repair and recombin 97.4 0.00013 4.4E-09 59.2 4.7 28 3-30 104-131 (324)
322 3b9p_A CG5977-PA, isoform A; A 97.4 0.0001 3.5E-09 58.6 4.0 26 5-30 53-78 (297)
323 1z2a_A RAS-related protein RAB 97.4 9.8E-05 3.4E-09 52.9 3.3 22 8-29 7-28 (168)
324 3umf_A Adenylate kinase; rossm 97.4 0.00011 3.9E-09 56.4 3.6 28 3-30 26-53 (217)
325 3pxi_A Negative regulator of g 97.4 0.0009 3.1E-08 60.3 10.1 23 8-30 523-545 (758)
326 2dyk_A GTP-binding protein; GT 97.4 0.00011 3.8E-09 52.4 3.3 23 8-30 3-25 (161)
327 2r8r_A Sensor protein; KDPD, P 97.4 0.00063 2.2E-08 52.6 7.7 40 106-145 83-125 (228)
328 1jbk_A CLPB protein; beta barr 97.4 0.00014 4.8E-09 53.1 3.9 28 5-32 42-69 (195)
329 3cmw_A Protein RECA, recombina 97.4 7.3E-05 2.5E-09 72.4 2.9 36 3-38 729-764 (1706)
330 2xb4_A Adenylate kinase; ATP-b 97.3 0.00011 3.9E-09 56.2 3.4 23 8-30 2-24 (223)
331 1kao_A RAP2A; GTP-binding prot 97.3 0.00012 4.1E-09 52.3 3.3 22 8-29 5-26 (167)
332 3be4_A Adenylate kinase; malar 97.3 0.00011 3.8E-09 56.0 3.3 26 5-30 4-29 (217)
333 2ce2_X GTPase HRAS; signaling 97.3 0.00011 3.7E-09 52.4 3.0 22 8-29 5-26 (166)
334 1u8z_A RAS-related protein RAL 97.3 0.00012 4.2E-09 52.2 3.3 22 8-29 6-27 (168)
335 1z0j_A RAB-22, RAS-related pro 97.3 0.00013 4.3E-09 52.5 3.3 23 8-30 8-30 (170)
336 2f6r_A COA synthase, bifunctio 97.3 0.00011 3.7E-09 58.6 3.2 24 6-29 75-98 (281)
337 2nzj_A GTP-binding protein REM 97.3 0.00011 3.8E-09 53.1 3.0 22 8-29 6-27 (175)
338 2erx_A GTP-binding protein DI- 97.3 0.00012 4.2E-09 52.6 3.1 22 8-29 5-26 (172)
339 1z08_A RAS-related protein RAB 97.3 0.00013 4.5E-09 52.4 3.3 22 8-29 8-29 (170)
340 1ek0_A Protein (GTP-binding pr 97.3 0.00013 4.5E-09 52.3 3.3 23 8-30 5-27 (170)
341 1sky_E F1-ATPase, F1-ATP synth 97.3 0.00013 4.4E-09 62.2 3.6 38 2-39 147-184 (473)
342 1ky3_A GTP-binding protein YPT 97.3 0.00013 4.6E-09 52.9 3.3 23 8-30 10-32 (182)
343 1wms_A RAB-9, RAB9, RAS-relate 97.3 0.00014 4.6E-09 52.8 3.3 22 8-29 9-30 (177)
344 3e2i_A Thymidine kinase; Zn-bi 97.3 0.0013 4.5E-08 50.4 8.9 26 4-29 26-52 (219)
345 4edh_A DTMP kinase, thymidylat 97.3 0.00022 7.6E-09 54.6 4.6 30 4-33 4-33 (213)
346 1g16_A RAS-related protein SEC 97.3 0.00012 4.3E-09 52.5 3.0 22 8-29 5-26 (170)
347 1c1y_A RAS-related protein RAP 97.3 0.00014 4.8E-09 52.0 3.3 22 8-29 5-26 (167)
348 2lkc_A Translation initiation 97.3 0.00018 6.3E-09 52.1 3.9 25 5-29 7-31 (178)
349 3q85_A GTP-binding protein REM 97.3 0.00012 4.3E-09 52.6 2.9 22 8-29 4-25 (169)
350 3b1v_A Ferrous iron uptake tra 97.3 0.00013 4.4E-09 58.0 3.2 23 8-30 5-27 (272)
351 3cmu_A Protein RECA, recombina 97.3 0.00026 8.9E-09 69.5 5.9 35 3-37 1424-1458(2050)
352 3v9p_A DTMP kinase, thymidylat 97.3 0.00011 3.9E-09 56.8 2.7 29 4-32 23-51 (227)
353 3q72_A GTP-binding protein RAD 97.3 8.9E-05 3E-09 53.2 1.9 22 8-29 4-25 (166)
354 2fn4_A P23, RAS-related protei 97.3 0.00014 4.9E-09 52.7 3.1 22 8-29 11-32 (181)
355 1ak2_A Adenylate kinase isoenz 97.3 0.0002 6.7E-09 55.2 3.9 26 5-30 15-40 (233)
356 1e4v_A Adenylate kinase; trans 97.3 0.00015 5E-09 55.1 3.1 23 8-30 2-24 (214)
357 1ypw_A Transitional endoplasmi 97.3 8.6E-05 3E-09 67.5 2.1 39 2-42 507-545 (806)
358 1svi_A GTP-binding protein YSX 97.3 0.00013 4.4E-09 53.9 2.7 23 7-29 24-46 (195)
359 2orv_A Thymidine kinase; TP4A 97.3 0.0013 4.6E-08 50.9 8.5 36 106-152 89-125 (234)
360 2h92_A Cytidylate kinase; ross 97.3 0.00018 6.3E-09 54.5 3.6 25 6-30 3-27 (219)
361 1r2q_A RAS-related protein RAB 97.2 0.00017 5.9E-09 51.6 3.3 22 8-29 8-29 (170)
362 4dsu_A GTPase KRAS, isoform 2B 97.2 0.00017 5.9E-09 52.7 3.3 23 8-30 6-28 (189)
363 1fzq_A ADP-ribosylation factor 97.2 9.8E-05 3.3E-09 54.4 1.9 23 7-29 17-39 (181)
364 1a5t_A Delta prime, HOLB; zinc 97.2 0.0014 4.9E-08 53.2 9.1 69 105-184 106-178 (334)
365 3clv_A RAB5 protein, putative; 97.2 0.00017 5.9E-09 53.2 3.3 23 8-30 9-31 (208)
366 2oil_A CATX-8, RAS-related pro 97.2 0.00018 6E-09 53.2 3.3 22 8-29 27-48 (193)
367 3bc1_A RAS-related protein RAB 97.2 0.00018 6.2E-09 52.7 3.3 22 8-29 13-34 (195)
368 3lv8_A DTMP kinase, thymidylat 97.2 0.00018 6.3E-09 56.0 3.4 28 5-32 26-53 (236)
369 3pqc_A Probable GTP-binding pr 97.2 0.00014 4.8E-09 53.5 2.7 23 8-30 25-47 (195)
370 1upt_A ARL1, ADP-ribosylation 97.2 0.00019 6.4E-09 51.7 3.3 24 6-29 7-30 (171)
371 3tw8_B RAS-related protein RAB 97.2 0.00012 4.2E-09 53.1 2.2 22 8-29 11-32 (181)
372 3t1o_A Gliding protein MGLA; G 97.2 0.00021 7.1E-09 52.6 3.5 24 8-31 16-39 (198)
373 1r8s_A ADP-ribosylation factor 97.2 0.0002 6.8E-09 51.2 3.3 22 8-29 2-23 (164)
374 3lxw_A GTPase IMAP family memb 97.2 0.00017 5.9E-09 56.2 3.1 23 8-30 23-45 (247)
375 2hxs_A RAB-26, RAS-related pro 97.2 0.0002 6.9E-09 51.9 3.3 22 8-29 8-29 (178)
376 1ltq_A Polynucleotide kinase; 97.2 0.00019 6.5E-09 57.2 3.4 22 7-28 3-24 (301)
377 2cxx_A Probable GTP-binding pr 97.2 0.00015 5E-09 53.3 2.5 22 8-29 3-24 (190)
378 2p65_A Hypothetical protein PF 97.2 0.00019 6.4E-09 52.4 3.1 27 6-32 43-69 (187)
379 2y8e_A RAB-protein 6, GH09086P 97.2 0.00019 6.4E-09 52.0 3.0 22 8-29 16-37 (179)
380 4tmk_A Protein (thymidylate ki 97.2 0.00031 1.1E-08 53.7 4.4 29 5-33 2-30 (213)
381 2v3c_C SRP54, signal recogniti 97.2 0.00011 3.9E-09 62.1 2.0 35 7-41 100-134 (432)
382 3d3q_A TRNA delta(2)-isopenten 97.2 0.00022 7.6E-09 58.4 3.7 25 7-31 8-32 (340)
383 1z0f_A RAB14, member RAS oncog 97.2 0.00021 7.2E-09 51.7 3.3 23 8-30 17-39 (179)
384 2a9k_A RAS-related protein RAL 97.2 0.00021 7.3E-09 52.0 3.3 22 8-29 20-41 (187)
385 3con_A GTPase NRAS; structural 97.2 0.00021 7.3E-09 52.5 3.3 22 8-29 23-44 (190)
386 2g6b_A RAS-related protein RAB 97.2 0.00022 7.5E-09 51.8 3.3 23 8-30 12-34 (180)
387 3dm5_A SRP54, signal recogniti 97.2 0.00031 1.1E-08 59.5 4.5 35 5-39 99-133 (443)
388 2o5v_A DNA replication and rep 97.2 0.00013 4.5E-09 60.2 2.2 27 1-28 22-48 (359)
389 1nrj_B SR-beta, signal recogni 97.2 0.00022 7.7E-09 53.8 3.3 23 8-30 14-36 (218)
390 2efe_B Small GTP-binding prote 97.2 0.00024 8.2E-09 51.6 3.3 22 8-29 14-35 (181)
391 3zvl_A Bifunctional polynucleo 97.2 0.00021 7.2E-09 60.1 3.4 26 5-30 257-282 (416)
392 2bme_A RAB4A, RAS-related prot 97.2 0.00022 7.6E-09 52.1 3.0 23 8-30 12-34 (186)
393 3bh0_A DNAB-like replicative h 97.2 0.0004 1.4E-08 56.1 4.8 28 3-30 65-92 (315)
394 3tmk_A Thymidylate kinase; pho 97.2 0.00031 1E-08 54.0 3.9 29 4-32 3-31 (216)
395 2bov_A RAla, RAS-related prote 97.1 0.00025 8.4E-09 52.8 3.3 22 8-29 16-37 (206)
396 2wsm_A Hydrogenase expression/ 97.1 0.00025 8.6E-09 53.6 3.3 25 7-31 31-55 (221)
397 1vg8_A RAS-related protein RAB 97.1 0.00026 8.8E-09 52.8 3.3 23 8-30 10-32 (207)
398 1m7b_A RND3/RHOE small GTP-bin 97.1 0.00023 8E-09 52.3 3.0 22 8-29 9-30 (184)
399 1wf3_A GTP-binding protein; GT 97.1 0.00024 8.3E-09 57.2 3.3 22 8-29 9-30 (301)
400 3sr0_A Adenylate kinase; phosp 97.1 0.00028 9.4E-09 53.8 3.5 23 8-30 2-24 (206)
401 1qvr_A CLPB protein; coiled co 97.1 0.0008 2.8E-08 61.4 7.1 27 6-32 191-217 (854)
402 2gf9_A RAS-related protein RAB 97.1 0.00026 9E-09 52.1 3.3 23 8-30 24-46 (189)
403 4a1f_A DNAB helicase, replicat 97.1 0.00035 1.2E-08 57.2 4.3 37 3-39 43-79 (338)
404 1moz_A ARL1, ADP-ribosylation 97.1 0.0001 3.5E-09 53.9 0.9 23 6-28 18-40 (183)
405 2ocp_A DGK, deoxyguanosine kin 97.1 0.0003 1E-08 54.4 3.6 27 5-31 1-27 (241)
406 3iev_A GTP-binding protein ERA 97.1 0.00025 8.5E-09 57.2 3.3 22 8-29 12-33 (308)
407 3tkl_A RAS-related protein RAB 97.1 0.00027 9.3E-09 52.1 3.3 23 8-30 18-40 (196)
408 2fg5_A RAB-22B, RAS-related pr 97.1 0.00025 8.6E-09 52.5 3.1 23 8-30 25-47 (192)
409 3kkq_A RAS-related protein M-R 97.1 0.00028 9.5E-09 51.5 3.3 22 8-29 20-41 (183)
410 2dby_A GTP-binding protein; GD 97.1 0.00025 8.5E-09 58.8 3.3 23 8-30 3-25 (368)
411 2gf0_A GTP-binding protein DI- 97.1 0.00026 9E-09 52.3 3.1 22 8-29 10-31 (199)
412 1mh1_A RAC1; GTP-binding, GTPa 97.1 0.00029 9.9E-09 51.4 3.3 22 8-29 7-28 (186)
413 3iby_A Ferrous iron transport 97.1 0.00025 8.6E-09 55.7 3.1 22 8-29 3-24 (256)
414 3ld9_A DTMP kinase, thymidylat 97.1 0.0003 1E-08 54.3 3.4 29 4-32 19-47 (223)
415 3uk6_A RUVB-like 2; hexameric 97.1 0.0005 1.7E-08 56.1 4.8 37 5-41 69-105 (368)
416 1z06_A RAS-related protein RAB 97.1 0.00032 1.1E-08 51.7 3.3 22 8-29 22-43 (189)
417 2qmh_A HPR kinase/phosphorylas 97.1 0.00028 9.5E-09 53.6 3.0 25 5-29 33-57 (205)
418 2cjw_A GTP-binding protein GEM 97.1 0.00031 1.1E-08 52.3 3.3 22 8-29 8-29 (192)
419 3oes_A GTPase rhebl1; small GT 97.1 0.00028 9.7E-09 52.6 3.0 23 8-30 26-48 (201)
420 2xtp_A GTPase IMAP family memb 97.1 0.00029 9.9E-09 55.0 3.1 22 8-29 24-45 (260)
421 3crm_A TRNA delta(2)-isopenten 97.1 0.00036 1.2E-08 56.8 3.8 24 7-30 6-29 (323)
422 2a5j_A RAS-related protein RAB 97.1 0.00033 1.1E-08 51.7 3.3 22 8-29 23-44 (191)
423 3dz8_A RAS-related protein RAB 97.1 0.0003 1E-08 52.0 3.0 23 8-30 25-47 (191)
424 3t5g_A GTP-binding protein RHE 97.1 0.00031 1.1E-08 51.2 3.0 22 8-29 8-29 (181)
425 2ew1_A RAS-related protein RAB 97.1 0.00031 1E-08 52.9 3.0 22 8-29 28-49 (201)
426 3bwd_D RAC-like GTP-binding pr 97.1 0.00035 1.2E-08 50.8 3.3 22 8-29 10-31 (182)
427 1zbd_A Rabphilin-3A; G protein 97.1 0.00032 1.1E-08 52.2 3.1 22 8-29 10-31 (203)
428 1ksh_A ARF-like protein 2; sma 97.0 0.00027 9.1E-09 51.8 2.6 24 6-29 18-41 (186)
429 3cbq_A GTP-binding protein REM 97.0 0.00018 6.1E-09 53.7 1.6 22 8-29 25-46 (195)
430 2atv_A RERG, RAS-like estrogen 97.0 0.00036 1.2E-08 51.8 3.3 22 8-29 30-51 (196)
431 1zd9_A ADP-ribosylation factor 97.0 0.00036 1.2E-08 51.5 3.3 22 8-29 24-45 (188)
432 3reg_A RHO-like small GTPase; 97.0 0.00036 1.2E-08 51.6 3.3 23 8-30 25-47 (194)
433 3a1s_A Iron(II) transport prot 97.0 0.00033 1.1E-08 55.0 3.1 22 8-29 7-28 (258)
434 2bcg_Y Protein YP2, GTP-bindin 97.0 0.00033 1.1E-08 52.3 3.0 23 8-30 10-32 (206)
435 1x3s_A RAS-related protein RAB 97.0 0.00037 1.3E-08 51.2 3.3 23 8-30 17-39 (195)
436 2p5s_A RAS and EF-hand domain 97.0 0.00037 1.3E-08 51.9 3.3 22 8-29 30-51 (199)
437 2zts_A Putative uncharacterize 97.0 0.00042 1.4E-08 53.2 3.6 25 3-27 27-51 (251)
438 3exa_A TRNA delta(2)-isopenten 97.0 0.00039 1.3E-08 56.4 3.5 25 6-30 3-27 (322)
439 2i1q_A DNA repair and recombin 97.0 0.00032 1.1E-08 56.6 3.1 27 3-29 95-121 (322)
440 3a8t_A Adenylate isopentenyltr 97.0 0.00041 1.4E-08 56.8 3.6 26 5-30 39-64 (339)
441 3cph_A RAS-related protein SEC 97.0 0.00039 1.3E-08 52.0 3.3 23 7-29 21-43 (213)
442 3t5d_A Septin-7; GTP-binding p 97.0 0.00023 8E-09 56.2 2.1 22 8-29 10-31 (274)
443 2iwr_A Centaurin gamma 1; ANK 97.0 0.00029 1E-08 51.2 2.5 22 8-29 9-30 (178)
444 1zj6_A ADP-ribosylation factor 97.0 0.00034 1.2E-08 51.4 2.9 22 7-28 17-38 (187)
445 2o52_A RAS-related protein RAB 97.0 0.00032 1.1E-08 52.4 2.7 22 8-29 27-48 (200)
446 3i8s_A Ferrous iron transport 97.0 0.00037 1.3E-08 55.2 3.1 22 8-29 5-26 (274)
447 3c5c_A RAS-like protein 12; GD 97.0 0.00043 1.5E-08 51.1 3.3 22 8-29 23-44 (187)
448 1gwn_A RHO-related GTP-binding 97.0 0.00038 1.3E-08 52.4 3.0 23 8-30 30-52 (205)
449 3p32_A Probable GTPase RV1496/ 97.0 0.00067 2.3E-08 55.7 4.7 34 6-39 79-112 (355)
450 2fv8_A H6, RHO-related GTP-bin 97.0 0.0004 1.4E-08 52.1 3.1 22 8-29 27-48 (207)
451 2h17_A ADP-ribosylation factor 97.0 0.00032 1.1E-08 51.4 2.4 22 8-29 23-44 (181)
452 1p5z_B DCK, deoxycytidine kina 97.0 0.00024 8.2E-09 55.7 1.8 27 4-30 22-48 (263)
453 1jwy_B Dynamin A GTPase domain 97.0 0.0004 1.4E-08 55.6 3.1 23 8-30 26-48 (315)
454 1r6b_X CLPA protein; AAA+, N-t 97.0 0.0025 8.5E-08 57.3 8.6 147 4-189 486-669 (758)
455 2il1_A RAB12; G-protein, GDP, 97.0 0.0003 1E-08 52.2 2.1 22 8-29 28-49 (192)
456 2fh5_B SR-beta, signal recogni 96.9 0.00048 1.6E-08 51.7 3.3 24 7-30 8-31 (214)
457 2qu8_A Putative nucleolar GTP- 96.9 0.00036 1.2E-08 53.2 2.6 23 7-29 30-52 (228)
458 2f7s_A C25KG, RAS-related prot 96.9 0.00044 1.5E-08 52.1 3.0 22 8-29 27-48 (217)
459 4dhe_A Probable GTP-binding pr 96.9 0.0002 7E-09 54.1 1.1 23 7-29 30-52 (223)
460 2r62_A Cell division protease 96.9 0.00021 7E-09 56.0 1.1 24 7-30 45-68 (268)
461 2hf9_A Probable hydrogenase ni 96.9 0.0005 1.7E-08 52.2 3.2 26 7-32 39-64 (226)
462 2q3h_A RAS homolog gene family 96.9 0.00045 1.5E-08 51.3 2.9 22 8-29 22-43 (201)
463 2h57_A ADP-ribosylation factor 96.9 0.00025 8.7E-09 52.3 1.5 23 8-30 23-45 (190)
464 2gco_A H9, RHO-related GTP-bin 96.9 0.00048 1.6E-08 51.4 3.0 22 8-29 27-48 (201)
465 4bas_A ADP-ribosylation factor 96.9 0.00036 1.2E-08 51.6 2.3 22 8-29 19-40 (199)
466 2j1l_A RHO-related GTP-binding 96.9 0.00043 1.5E-08 52.3 2.7 22 8-29 36-57 (214)
467 3cnl_A YLQF, putative uncharac 96.9 0.00052 1.8E-08 54.1 3.2 27 7-33 100-126 (262)
468 2atx_A Small GTP binding prote 96.9 0.00053 1.8E-08 50.6 3.1 22 8-29 20-41 (194)
469 3llu_A RAS-related GTP-binding 96.9 0.00046 1.6E-08 51.3 2.7 23 8-30 22-44 (196)
470 2fu5_C RAS-related protein RAB 96.9 0.0003 1E-08 51.3 1.6 22 8-29 10-31 (183)
471 2gno_A DNA polymerase III, gam 96.9 0.0036 1.2E-07 50.4 8.1 67 106-185 81-151 (305)
472 1xwi_A SKD1 protein; VPS4B, AA 96.9 0.00078 2.7E-08 54.6 4.2 26 5-30 44-69 (322)
473 3foz_A TRNA delta(2)-isopenten 96.9 0.00075 2.6E-08 54.6 4.0 25 6-30 10-34 (316)
474 3t15_A Ribulose bisphosphate c 96.9 0.00072 2.5E-08 54.0 3.9 26 5-30 35-60 (293)
475 1ko7_A HPR kinase/phosphatase; 96.9 0.00051 1.8E-08 55.6 2.9 24 5-28 143-166 (314)
476 3tqf_A HPR(Ser) kinase; transf 96.8 0.00064 2.2E-08 50.4 3.0 24 5-28 15-38 (181)
477 2aka_B Dynamin-1; fusion prote 96.8 0.00051 1.7E-08 54.4 2.7 23 8-30 28-50 (299)
478 2qgz_A Helicase loader, putati 96.8 0.001 3.5E-08 53.6 4.5 26 6-31 152-177 (308)
479 2q6t_A DNAB replication FORK h 96.8 0.00073 2.5E-08 57.2 3.7 31 3-33 197-227 (444)
480 2hup_A RAS-related protein RAB 96.8 0.00065 2.2E-08 50.8 3.1 22 8-29 31-52 (201)
481 3def_A T7I23.11 protein; chlor 96.8 0.00059 2E-08 53.5 2.9 22 8-29 38-59 (262)
482 2b6h_A ADP-ribosylation factor 96.8 0.00043 1.5E-08 51.4 2.0 22 7-28 30-51 (192)
483 1ofh_A ATP-dependent HSL prote 96.8 0.0008 2.7E-08 53.3 3.6 25 6-30 50-74 (310)
484 3cpj_B GTP-binding protein YPT 96.8 0.00074 2.5E-08 51.2 3.3 22 8-29 15-36 (223)
485 1tue_A Replication protein E1; 96.8 0.00077 2.6E-08 51.4 3.3 27 4-30 56-82 (212)
486 1h65_A Chloroplast outer envel 96.8 0.00067 2.3E-08 53.4 3.1 23 8-30 41-63 (270)
487 2g3y_A GTP-binding protein GEM 96.8 0.00067 2.3E-08 51.6 3.0 22 8-29 39-60 (211)
488 4gzl_A RAS-related C3 botulinu 96.8 0.0007 2.4E-08 50.7 3.0 22 8-29 32-53 (204)
489 3hws_A ATP-dependent CLP prote 96.8 0.00085 2.9E-08 55.0 3.7 26 5-30 50-75 (363)
490 3q3j_B RHO-related GTP-binding 96.8 0.0008 2.7E-08 50.9 3.3 22 8-29 29-50 (214)
491 3cmw_A Protein RECA, recombina 96.8 0.0015 5.1E-08 63.5 5.7 30 3-32 380-409 (1706)
492 3pvs_A Replication-associated 96.7 0.00061 2.1E-08 57.8 2.7 23 8-30 52-74 (447)
493 4hlc_A DTMP kinase, thymidylat 96.7 0.00096 3.3E-08 50.6 3.5 26 6-31 2-27 (205)
494 2j0v_A RAC-like GTP-binding pr 96.7 0.00084 2.9E-08 50.3 3.0 22 8-29 11-32 (212)
495 2yc2_C IFT27, small RAB-relate 96.7 0.0003 1E-08 52.3 0.5 22 8-29 22-43 (208)
496 2bjv_A PSP operon transcriptio 96.7 0.0018 6.2E-08 50.5 5.0 28 5-32 28-55 (265)
497 3eie_A Vacuolar protein sortin 96.7 0.0011 3.9E-08 53.4 3.9 25 6-30 51-75 (322)
498 3e1s_A Exodeoxyribonuclease V, 96.7 0.0014 4.6E-08 57.4 4.6 35 5-39 203-237 (574)
499 3d8b_A Fidgetin-like protein 1 96.7 0.0013 4.3E-08 54.0 4.2 26 5-30 116-141 (357)
500 4djt_A GTP-binding nuclear pro 96.7 0.00029 1E-08 53.1 0.3 22 8-29 13-34 (218)
No 1
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=1.2e-35 Score=246.41 Aligned_cols=156 Identities=15% Similarity=0.176 Sum_probs=124.2
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEch----hhccCCceeeEEEeec--CCcccccccccCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTG----EIRQGGQRVGFEVVTL--DDRRAPLASINAS 74 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~----~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~ 74 (193)
|+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++. .....++++||+||++ ++.+++.+|+.+.
T Consensus 25 l~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~ 104 (359)
T 3fvq_A 25 LSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYG 104 (359)
T ss_dssp EEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTT
T ss_pred EEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHH
Confidence 578999999999999999999999999999999999999999872 2233456799999987 4556788887665
Q ss_pred CCCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHH
Q 029421 75 SPESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRI 133 (193)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~ 133 (193)
.... ............++++.+++.++. |+.+|++|||||| ++||+..+..+...+..
T Consensus 105 l~~~-~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~ 183 (359)
T 3fvq_A 105 LGNG-KGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIA 183 (359)
T ss_dssp STTS-SCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred HHHc-CCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 4321 112222233456777888876542 8999999999999 79999999888875555
Q ss_pred -HhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 134 -LES-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 134 -l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.++ |+|+|+| |||++++..+||++
T Consensus 184 ~~~~~g~tvi~v------THd~~ea~~~aDri 209 (359)
T 3fvq_A 184 ALRANGKSAVFV------SHDREEALQYADRI 209 (359)
T ss_dssp HHHHTTCEEEEE------CCCHHHHHHHCSEE
T ss_pred HHHhCCCEEEEE------eCCHHHHHHHCCEE
Confidence 455 9999999 99999999999994
No 2
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=1.2e-35 Score=246.72 Aligned_cols=156 Identities=15% Similarity=0.225 Sum_probs=124.2
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh-----ccCCceeeEEEeec--CCcccccccccC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI-----RQGGQRVGFEVVTL--DDRRAPLASINA 73 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~-----~~~~~~ig~~~q~~--~~~~~~~~~~~~ 73 (193)
|+|++|++++|+||||||||||+|+|+|+++|++|+|.++|+++... ...++++||+||++ .+..++.+|+.+
T Consensus 49 l~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~ 128 (366)
T 3tui_C 49 LHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVAL 128 (366)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHH
T ss_pred EEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHH
Confidence 57899999999999999999999999999999999999999987422 12346799999987 344567777654
Q ss_pred CCCCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421 74 SSPESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLR 132 (193)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~ 132 (193)
.... .............++++.+++.+.. |+.+|++|||||| ++||+..+..+.++++
T Consensus 129 ~~~~-~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~ 207 (366)
T 3tui_C 129 PLEL-DNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLK 207 (366)
T ss_dssp HHHH-SCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHH
T ss_pred HHHh-cCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHH
Confidence 3211 1112222233456777888876542 8999999999999 6999999999999999
Q ss_pred HHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 133 ILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 133 ~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.++ + |+|||++ |||++.+.++||++
T Consensus 208 ~l~~~~g~Tii~v------THdl~~~~~~aDrv 234 (366)
T 3tui_C 208 DINRRLGLTILLI------THEMDVVKRICDCV 234 (366)
T ss_dssp HHHHHSCCEEEEE------ESCHHHHHHHCSEE
T ss_pred HHHHhCCCEEEEE------ecCHHHHHHhCCEE
Confidence 885 4 9999999 99999999999994
No 3
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=1.2e-35 Score=248.09 Aligned_cols=156 Identities=13% Similarity=0.123 Sum_probs=126.1
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeec--CCcccccccccCCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTL--DDRRAPLASINASSPES 78 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~~~ 78 (193)
|+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+...+.+||+||++ ++.+++.+|+.+....
T Consensus 24 l~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~- 102 (381)
T 3rlf_A 24 LDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKL- 102 (381)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHH-
T ss_pred EEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHH-
Confidence 5789999999999999999999999999999999999999999865544457899999987 4556777776553211
Q ss_pred CCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh-C
Q 029421 79 YRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE-S 136 (193)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~-~ 136 (193)
.............++++.+++..+. |+.+|++|||||| ++||+..+..+.++++.+. +
T Consensus 103 ~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~ 182 (381)
T 3rlf_A 103 AGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKR 182 (381)
T ss_dssp TTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHh
Confidence 1112222223455677777776442 8899999999999 7999999999999998875 4
Q ss_pred -CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 137 -NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 137 -g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
|.|+|++ |||++++..+||++
T Consensus 183 ~g~tii~v------THd~~ea~~~aDri 204 (381)
T 3rlf_A 183 LGRTMIYV------THDQVEAMTLADKI 204 (381)
T ss_dssp HCCEEEEE------CSCHHHHHHHCSEE
T ss_pred CCCEEEEE------ECCHHHHHHhCCEE
Confidence 9999999 99999999999994
No 4
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=9.8e-36 Score=238.28 Aligned_cols=157 Identities=13% Similarity=0.246 Sum_probs=119.9
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEch--h--hccCCceeeEEEeec--CCcccccccccCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTG--E--IRQGGQRVGFEVVTL--DDRRAPLASINAS 74 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~--~--~~~~~~~ig~~~q~~--~~~~~~~~~~~~~ 74 (193)
|+|++|++++|+||||||||||+|+|+|+++|++|+|.++|+++. . ....++++||+||++ .+..++.+++.+.
T Consensus 45 l~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~ 124 (263)
T 2olj_A 45 VHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLA 124 (263)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHH
T ss_pred EEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHH
Confidence 578999999999999999999999999999999999999998863 1 112245799999986 3334666665442
Q ss_pred CCCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHH
Q 029421 75 SPESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRI 133 (193)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~ 133 (193)
.................++++.+++.... ++.+|++|||||| ++||+.++..+.++++.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~ 204 (263)
T 2olj_A 125 PMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQ 204 (263)
T ss_dssp HHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 10011111111122345667777765432 8899999999999 69999999999999998
Q ss_pred HhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 134 LES-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 134 l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
+++ |+|||++ |||++.+.++||++
T Consensus 205 l~~~g~tvi~v------tHd~~~~~~~~d~v 229 (263)
T 2olj_A 205 LANEGMTMVVV------THEMGFAREVGDRV 229 (263)
T ss_dssp HHHTTCEEEEE------CSCHHHHHHHCSEE
T ss_pred HHhCCCEEEEE------cCCHHHHHHhCCEE
Confidence 865 9999999 99999999999984
No 5
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=5.3e-35 Score=242.91 Aligned_cols=156 Identities=15% Similarity=0.179 Sum_probs=124.9
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeec--CCcccccccccCCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTL--DDRRAPLASINASSPES 78 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~~~ 78 (193)
|+|++|++++|+||||||||||+|+|+|+++|++|+|.++|+++......++++||+||++ ++.+++.+|+.+....
T Consensus 24 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~- 102 (359)
T 2yyz_A 24 FEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRA- 102 (359)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSS-
T ss_pred EEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHh-
Confidence 5789999999999999999999999999999999999999998754444456799999986 4556777876654321
Q ss_pred CCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh-C
Q 029421 79 YRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE-S 136 (193)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~-~ 136 (193)
.............++++.+++.++. ++.+|++|||||| ++||+..+..+.++++.+. +
T Consensus 103 ~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~ 182 (359)
T 2yyz_A 103 RRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQE 182 (359)
T ss_dssp SCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh
Confidence 1111111223455677777776432 8999999999999 7999999999999998875 4
Q ss_pred -CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 137 -NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 137 -g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
|.|+|++ |||.+++..+||++
T Consensus 183 ~g~tvi~v------THd~~~~~~~adri 204 (359)
T 2yyz_A 183 LGITSVYV------THDQAEAMTMASRI 204 (359)
T ss_dssp HCCEEEEE------ESCHHHHHHHCSEE
T ss_pred cCCEEEEE------cCCHHHHHHhCCEE
Confidence 9999999 99999999999994
No 6
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=1e-34 Score=242.30 Aligned_cols=156 Identities=13% Similarity=0.156 Sum_probs=122.8
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeec--CCcccccccccCCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTL--DDRRAPLASINASSPES 78 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~~~ 78 (193)
|+|++|++++|+||||||||||||+|+|+++|++|+|.++|+++......++++||+||++ ++.+++.+|+.+....
T Consensus 32 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~- 110 (372)
T 1v43_A 32 LTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKI- 110 (372)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--
T ss_pred EEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHh-
Confidence 5789999999999999999999999999999999999999998754444457799999986 4556788887664321
Q ss_pred CCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh-C
Q 029421 79 YRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE-S 136 (193)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~-~ 136 (193)
.............++++.+++.++. |+.+|++|||||| ++||+..+..+.++++.+. +
T Consensus 111 ~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~ 190 (372)
T 1v43_A 111 KKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQK 190 (372)
T ss_dssp -CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh
Confidence 1111111123455677777775432 8899999999999 7999999999999998875 4
Q ss_pred -CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 137 -NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 137 -g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
|.|+|++ |||.+++..+||++
T Consensus 191 ~g~tvi~v------THd~~~a~~~adri 212 (372)
T 1v43_A 191 LKVTTIYV------THDQVEAMTMGDRI 212 (372)
T ss_dssp HTCEEEEE------ESCHHHHHHHCSEE
T ss_pred CCCEEEEE------eCCHHHHHHhCCEE
Confidence 9999999 99999999999994
No 7
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=1.3e-35 Score=237.61 Aligned_cols=157 Identities=14% Similarity=0.171 Sum_probs=120.2
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh----------h-----ccCCceeeEEEeec--CC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE----------I-----RQGGQRVGFEVVTL--DD 63 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~----------~-----~~~~~~ig~~~q~~--~~ 63 (193)
|+|++|++++|+||||||||||+|+|+|+++|++|+|.++|.++.. . ...++++||+||++ .+
T Consensus 27 l~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~ 106 (262)
T 1b0u_A 27 LQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWS 106 (262)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCT
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceEEEecCcccCC
Confidence 5789999999999999999999999999999999999999988641 0 12245799999986 33
Q ss_pred cccccccccCCCCCCCCCCcccceeeehhhhhhhccccc-c--------------------cCCCCCEEEEecC-CCccc
Q 029421 64 RRAPLASINASSPESYRWPTVGRYKVDVASFEAIALPEL-Q--------------------VGADTDLFVIDEV-GKMEL 121 (193)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~--------------------l~~~p~llllDEp-~~LD~ 121 (193)
..++.+++.+..................++++.+++.+. . ++.+|++|||||| ++||+
T Consensus 107 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~ 186 (262)
T 1b0u_A 107 HMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDP 186 (262)
T ss_dssp TSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCH
T ss_pred CCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCH
Confidence 446666654421001111111112234566777776544 2 8899999999999 69999
Q ss_pred cccchHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 122 FSSSFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 122 ~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.++..+.++++.+++ |+|||++ |||++++..+||++
T Consensus 187 ~~~~~~~~~l~~l~~~g~tvi~v------tHd~~~~~~~~d~v 223 (262)
T 1b0u_A 187 ELVGEVLRIMQQLAEEGKTMVVV------THEMGFARHVSSHV 223 (262)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEE------CSCHHHHHHHCSEE
T ss_pred HHHHHHHHHHHHHHhCCCEEEEE------eCCHHHHHHhCCEE
Confidence 999999999998865 9999999 99999999999983
No 8
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=6.5e-35 Score=242.19 Aligned_cols=156 Identities=14% Similarity=0.194 Sum_probs=124.5
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh-----hccCCceeeEEEeec--CCcccccccccC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE-----IRQGGQRVGFEVVTL--DDRRAPLASINA 73 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~-----~~~~~~~ig~~~q~~--~~~~~~~~~~~~ 73 (193)
|+|++|++++|+||||||||||+|+|+|+++|++|+|.++|+++.. ....++++||+||++ ++.+++.+|+.+
T Consensus 26 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~ 105 (353)
T 1oxx_K 26 INIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAF 105 (353)
T ss_dssp EEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHG
T ss_pred EEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHH
Confidence 5789999999999999999999999999999999999999988743 333457899999986 445677777665
Q ss_pred CCCCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421 74 SSPESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLR 132 (193)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~ 132 (193)
.... .............++++.+++.++. |+.+|++|||||| ++||+..+..+.++++
T Consensus 106 ~~~~-~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~ 184 (353)
T 1oxx_K 106 PLTN-MKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVK 184 (353)
T ss_dssp GGTT-SSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHH
T ss_pred HHHH-cCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHH
Confidence 4321 1111111223455677777776432 8899999999999 7999999999999998
Q ss_pred HHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 133 ILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 133 ~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+. + |+|+|++ |||.+++..+||++
T Consensus 185 ~l~~~~g~tvi~v------THd~~~~~~~adri 211 (353)
T 1oxx_K 185 EVQSRLGVTLLVV------SHDPADIFAIADRV 211 (353)
T ss_dssp HHHHHHCCEEEEE------ESCHHHHHHHCSEE
T ss_pred HHHHhcCCEEEEE------eCCHHHHHHhCCEE
Confidence 875 4 9999999 99999999999994
No 9
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=3.8e-35 Score=243.35 Aligned_cols=156 Identities=12% Similarity=0.155 Sum_probs=124.5
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeec--CCcccccccccCCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTL--DDRRAPLASINASSPES 78 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~~~ 78 (193)
|+|++|++++|+||||||||||+|+|+|+++|++|+|.++|+++......++++||+||++ ++.+++.+|+.+....
T Consensus 36 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~- 114 (355)
T 1z47_A 36 FQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLRE- 114 (355)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHH-
T ss_pred EEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHH-
Confidence 5789999999999999999999999999999999999999998754444457899999986 4456777776553211
Q ss_pred CCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh-C
Q 029421 79 YRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE-S 136 (193)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~-~ 136 (193)
.............++++.+++.++. |+.+|++|||||| ++||+..+..+.++++.+. +
T Consensus 115 ~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~ 194 (355)
T 1z47_A 115 KRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDE 194 (355)
T ss_dssp TTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 1111111223455677777776442 8899999999999 7999999999999998875 4
Q ss_pred -CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 137 -NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 137 -g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
|.|+|++ |||.+++..+||++
T Consensus 195 ~g~tvi~v------THd~~~a~~~adri 216 (355)
T 1z47_A 195 MGVTSVFV------THDQEEALEVADRV 216 (355)
T ss_dssp HTCEEEEE------CSCHHHHHHHCSEE
T ss_pred cCCEEEEE------CCCHHHHHHhCCEE
Confidence 9999999 99999999999994
No 10
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=1e-35 Score=239.53 Aligned_cols=156 Identities=17% Similarity=0.205 Sum_probs=120.8
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEch--h--hccCCceeeEEEeecC---CcccccccccC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTG--E--IRQGGQRVGFEVVTLD---DRRAPLASINA 73 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~--~--~~~~~~~ig~~~q~~~---~~~~~~~~~~~ 73 (193)
|+|++|++++|+||||||||||+|+|+|+++|++|+|.++|+++. . ....++.+||+||++. ...++.+++.+
T Consensus 29 l~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~ 108 (275)
T 3gfo_A 29 MNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSF 108 (275)
T ss_dssp EEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHH
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccCcHHHHHHH
Confidence 578999999999999999999999999999999999999999872 1 1233567999999762 22355555443
Q ss_pred CCCCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421 74 SSPESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLR 132 (193)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~ 132 (193)
.... .............++++.+++..+. ++.+|++|||||| ++||+.++..+.++++
T Consensus 109 ~~~~-~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~ 187 (275)
T 3gfo_A 109 GAVN-MKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLV 187 (275)
T ss_dssp HHHT-SCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHH
T ss_pred HHHH-cCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHH
Confidence 2111 1111111223455667777775432 8899999999999 6999999999999999
Q ss_pred HHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 133 ILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 133 ~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.++ + |+|||++ |||++++.++||++
T Consensus 188 ~l~~~~g~tvi~v------tHdl~~~~~~~drv 214 (275)
T 3gfo_A 188 EMQKELGITIIIA------THDIDIVPLYCDNV 214 (275)
T ss_dssp HHHHHHCCEEEEE------ESCCSSGGGGCSEE
T ss_pred HHHhhCCCEEEEE------ecCHHHHHHhCCEE
Confidence 886 5 9999999 99999999999994
No 11
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=2.9e-35 Score=234.97 Aligned_cols=157 Identities=17% Similarity=0.095 Sum_probs=120.9
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh---ccCCceeeEEEeec--CCcccccccccCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI---RQGGQRVGFEVVTL--DDRRAPLASINASS 75 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~---~~~~~~ig~~~q~~--~~~~~~~~~~~~~~ 75 (193)
|+|++|++++|+||||||||||+|+|+|+++|++|+|.++|.++... ...++.+||+||++ .+..++.+++.+..
T Consensus 28 l~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~ 107 (257)
T 1g6h_A 28 ISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGE 107 (257)
T ss_dssp CEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGG
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHH
Confidence 68999999999999999999999999999999999999999987432 11235699999986 33456666655432
Q ss_pred CC-CCC-----------CCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCcccc
Q 029421 76 PE-SYR-----------WPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELF 122 (193)
Q Consensus 76 ~~-~~~-----------~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~ 122 (193)
.. ... ...........+.++.+++.... ++.+|++|||||| ++||+.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~ 187 (257)
T 1g6h_A 108 ICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPG 187 (257)
T ss_dssp TSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHH
T ss_pred hhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHH
Confidence 11 001 01111122345667777765432 7899999999999 699999
Q ss_pred ccchHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 123 SSSFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 123 ~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
++..+.++++.+++ |+|||++ |||++++.++||++
T Consensus 188 ~~~~l~~~l~~l~~~g~tvi~v------tHd~~~~~~~~d~v 223 (257)
T 1g6h_A 188 LAHDIFNHVLELKAKGITFLII------EHRLDIVLNYIDHL 223 (257)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEE------CSCCSTTGGGCSEE
T ss_pred HHHHHHHHHHHHHHCCCEEEEE------ecCHHHHHHhCCEE
Confidence 99999999998865 9999999 99999999999983
No 12
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=7.7e-35 Score=242.17 Aligned_cols=156 Identities=15% Similarity=0.181 Sum_probs=124.3
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeec--CCcccccccccCCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTL--DDRRAPLASINASSPES 78 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~~~ 78 (193)
|+|++|++++|+||||||||||+|+|+|+++|++|+|.++|+++......++++||+||++ ++.+++.+|+.+....
T Consensus 24 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~- 102 (362)
T 2it1_A 24 LKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLEL- 102 (362)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHH-
T ss_pred EEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHh-
Confidence 5789999999999999999999999999999999999999998754443456799999986 4456777776553210
Q ss_pred CCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh-C
Q 029421 79 YRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE-S 136 (193)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~-~ 136 (193)
.............++++.+++.++. ++.+|++|||||| ++||+..+..+.++++.+. +
T Consensus 103 ~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~ 182 (362)
T 2it1_A 103 RKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKE 182 (362)
T ss_dssp TTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHh
Confidence 1111111223455677777776442 8899999999999 7999999999999998875 4
Q ss_pred -CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 137 -NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 137 -g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
|.|+|++ |||.+++..+||++
T Consensus 183 ~g~tvi~v------THd~~~a~~~adri 204 (362)
T 2it1_A 183 LGITTVYV------THDQAEALAMADRI 204 (362)
T ss_dssp HTCEEEEE------ESCHHHHHHHCSEE
T ss_pred CCCEEEEE------CCCHHHHHHhCCEE
Confidence 9999999 99999999999994
No 13
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=6e-35 Score=230.29 Aligned_cols=156 Identities=15% Similarity=0.208 Sum_probs=116.8
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc-----c-CCceeeEEEeec--CCccccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR-----Q-GGQRVGFEVVTL--DDRRAPLASIN 72 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~-----~-~~~~ig~~~q~~--~~~~~~~~~~~ 72 (193)
|+|++|++++|+||||||||||+|+|+|+++|++|+|.++|.++.... . .++.+||+||++ .+..++.+++.
T Consensus 26 l~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~ 105 (235)
T 3tif_A 26 LNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVE 105 (235)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHH
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHH
Confidence 578999999999999999999999999999999999999999874321 1 134699999987 33456666654
Q ss_pred CCCCCC--CCCCcccceeeehhhhhhhccccc---------c------------cCCCCCEEEEecC-CCccccccchHH
Q 029421 73 ASSPES--YRWPTVGRYKVDVASFEAIALPEL---------Q------------VGADTDLFVIDEV-GKMELFSSSFFP 128 (193)
Q Consensus 73 ~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~---------~------------l~~~p~llllDEp-~~LD~~~~~~~~ 128 (193)
+..... .............+.++.+++.+. + ++.+|++|||||| ++||+.++..+.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~ 185 (235)
T 3tif_A 106 LPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIM 185 (235)
T ss_dssp HHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHH
T ss_pred HHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH
Confidence 421100 011111112234456666665431 1 8899999999999 699999999999
Q ss_pred HHHHHHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 129 AVLRILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 129 ~ll~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
++++.++ + |+|||++ |||++. .++||++
T Consensus 186 ~~l~~l~~~~g~tvi~v------tHd~~~-~~~~d~i 215 (235)
T 3tif_A 186 QLLKKLNEEDGKTVVVV------THDINV-ARFGERI 215 (235)
T ss_dssp HHHHHHHHHHCCEEEEE------CSCHHH-HTTSSEE
T ss_pred HHHHHHHHHcCCEEEEE------cCCHHH-HHhCCEE
Confidence 9999885 4 9999999 999985 4789983
No 14
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=1.7e-34 Score=228.37 Aligned_cols=153 Identities=16% Similarity=0.261 Sum_probs=120.6
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeec--CCcccccccccCCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTL--DDRRAPLASINASSPES 78 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~~~ 78 (193)
|++++ ++++|+||||||||||+|+|+|+++|++|+|.++|.++......++++||+||++ .+..++.+++.+....
T Consensus 20 l~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~- 97 (240)
T 2onk_A 20 FEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRN- 97 (240)
T ss_dssp EEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTT-
T ss_pred EEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHH-
Confidence 57899 9999999999999999999999999999999999998754334456799999986 3345666776553211
Q ss_pred CCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh-C
Q 029421 79 YRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE-S 136 (193)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~-~ 136 (193)
.... .......+.++.+++.+.. ++.+|+++||||| ++||+.++..+.++++.++ +
T Consensus 98 ~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~ 175 (240)
T 2onk_A 98 VERV--ERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQRE 175 (240)
T ss_dssp SCHH--HHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHH
T ss_pred cCCc--hHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 1111 1123345667777765432 8899999999999 6999999999999999875 4
Q ss_pred -CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 137 -NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 137 -g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
|+|||++ |||++++..+||++
T Consensus 176 ~g~tvi~v------tHd~~~~~~~~d~i 197 (240)
T 2onk_A 176 FDVPILHV------THDLIEAAMLADEV 197 (240)
T ss_dssp HTCCEEEE------ESCHHHHHHHCSEE
T ss_pred cCCEEEEE------eCCHHHHHHhCCEE
Confidence 9999999 99999999999983
No 15
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=5.3e-35 Score=229.06 Aligned_cols=155 Identities=12% Similarity=0.134 Sum_probs=117.3
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc-----cC-CceeeEEEeec--CCccccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR-----QG-GQRVGFEVVTL--DDRRAPLASIN 72 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~-----~~-~~~ig~~~q~~--~~~~~~~~~~~ 72 (193)
|+|++|++++|+||||||||||+|+|+|+++|++|+|.++|.++.... .. ++.+||+||++ .+..++.+++.
T Consensus 25 l~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~ 104 (224)
T 2pcj_A 25 LSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVI 104 (224)
T ss_dssp EEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHH
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHH
Confidence 578999999999999999999999999999999999999998864221 11 25699999986 23346666654
Q ss_pred CCCCCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421 73 ASSPESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVL 131 (193)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll 131 (193)
+... ..............+.++.+++.+.. ++.+|+++||||| ++||+.++..+.+++
T Consensus 105 ~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l 183 (224)
T 2pcj_A 105 VPML-KMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIF 183 (224)
T ss_dssp HHHH-HTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHH
T ss_pred hHHH-HcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHH
Confidence 3211 00111111122345667777765432 8899999999999 699999999999999
Q ss_pred HHHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 132 RILES-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 132 ~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
+.+++ |.|||++ |||++.+ .+||++
T Consensus 184 ~~l~~~g~tvi~v------tHd~~~~-~~~d~v 209 (224)
T 2pcj_A 184 LKINEGGTSIVMV------THERELA-ELTHRT 209 (224)
T ss_dssp HHHHHTTCEEEEE------CSCHHHH-TTSSEE
T ss_pred HHHHHCCCEEEEE------cCCHHHH-HhCCEE
Confidence 98865 9999999 9998877 788873
No 16
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.4e-34 Score=228.83 Aligned_cols=155 Identities=13% Similarity=0.094 Sum_probs=117.3
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc---cCCceeeEEEeec--CCcccccccccCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR---QGGQRVGFEVVTL--DDRRAPLASINASS 75 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~---~~~~~ig~~~q~~--~~~~~~~~~~~~~~ 75 (193)
|+|++|++++|+||||||||||+|+|+|+++|++|+|.++|.++.... ..++++||+||++ .+..++.+++.+..
T Consensus 27 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~ 106 (240)
T 1ji0_A 27 LKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGA 106 (240)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGG
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhh
Confidence 578999999999999999999999999999999999999999874321 1134599999986 33446667655431
Q ss_pred CCCCCCCcccceeeehhhhhhhc-cccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHH
Q 029421 76 PESYRWPTVGRYKVDVASFEAIA-LPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRI 133 (193)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~-l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~ 133 (193)
.. ............+.++.++ +... + ++.+|+++||||| ++||+.++..+.++++.
T Consensus 107 ~~--~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~ 184 (240)
T 1ji0_A 107 YN--RKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQK 184 (240)
T ss_dssp TT--CCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHH
T ss_pred hc--CCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 10 0111111122334555553 4322 1 8899999999999 69999999999999998
Q ss_pred HhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 134 LES-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 134 l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
+++ |+|||++ |||++++.++||++
T Consensus 185 ~~~~g~tvi~v------tHd~~~~~~~~d~v 209 (240)
T 1ji0_A 185 INQEGTTILLV------EQNALGALKVAHYG 209 (240)
T ss_dssp HHHTTCCEEEE------ESCHHHHHHHCSEE
T ss_pred HHHCCCEEEEE------ecCHHHHHHhCCEE
Confidence 865 9999999 99999999999983
No 17
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=1.9e-34 Score=231.32 Aligned_cols=154 Identities=15% Similarity=0.229 Sum_probs=120.6
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeec---CCcccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTL---DDRRAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~---~~~~~~~~~~~~~~~~ 77 (193)
|+|++|++++|+||||||||||+|+|+|+++|++|+|.++|.++... ..++.+||+||++ ....++.+++.+....
T Consensus 28 l~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~-~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~ 106 (266)
T 2yz2_A 28 LVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY-EIRRNIGIAFQYPEDQFFAERVFDEVAFAVKN 106 (266)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH-HHGGGEEEECSSGGGGCCCSSHHHHHHHTTTT
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH-HhhhhEEEEeccchhhcCCCcHHHHHHHHHHh
Confidence 57899999999999999999999999999999999999999887432 3356799999974 2334666665543221
Q ss_pred CCCCCcccceeeehhhhhhhccc--ccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHH
Q 029421 78 SYRWPTVGRYKVDVASFEAIALP--ELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRIL 134 (193)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~l~--~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l 134 (193)
. ...........++++.+++. +.. ++.+|+++||||| ++||+.++..+.++++.+
T Consensus 107 ~--~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l 184 (266)
T 2yz2_A 107 F--YPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKW 184 (266)
T ss_dssp T--CTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred c--CCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHH
Confidence 1 11111122345667777776 432 8899999999999 699999999999999988
Q ss_pred hC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 135 ES-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 135 ~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
++ |.|||++ |||++.+..+||++
T Consensus 185 ~~~g~tii~v------tHd~~~~~~~~d~v 208 (266)
T 2yz2_A 185 KTLGKTVILI------SHDIETVINHVDRV 208 (266)
T ss_dssp HHTTCEEEEE------CSCCTTTGGGCSEE
T ss_pred HHcCCEEEEE------eCCHHHHHHhCCEE
Confidence 64 9999999 99999999999983
No 18
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=1.1e-34 Score=242.22 Aligned_cols=156 Identities=14% Similarity=0.181 Sum_probs=123.3
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh------hccCCceeeEEEeec--CCccccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE------IRQGGQRVGFEVVTL--DDRRAPLASIN 72 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~------~~~~~~~ig~~~q~~--~~~~~~~~~~~ 72 (193)
|+|++|++++|+||||||||||||+|+|+++|++|+|.++|+++.. ....++++||+||++ ++.+++.+|+.
T Consensus 24 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~ 103 (372)
T 1g29_1 24 LEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIA 103 (372)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHH
T ss_pred EEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCEEEEeCCCccCCCCCHHHHHH
Confidence 5789999999999999999999999999999999999999988743 333356799999986 44567777765
Q ss_pred CCCCCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421 73 ASSPESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVL 131 (193)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll 131 (193)
+.... .............++++.+++.++. |+.+|++|||||| ++||+..+..+..++
T Consensus 104 ~~~~~-~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l 182 (372)
T 1g29_1 104 FPLKL-RKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAEL 182 (372)
T ss_dssp HHHHH-TTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHH
T ss_pred HHHHH-cCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHH
Confidence 53211 1111111123455677777776432 8899999999999 799999999999999
Q ss_pred HHHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 132 RILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 132 ~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
+.+. + |.|+|++ |||.+++..+||++
T Consensus 183 ~~l~~~~g~tvi~v------THd~~~a~~~adri 210 (372)
T 1g29_1 183 KKLQRQLGVTTIYV------THDQVEAMTMGDRI 210 (372)
T ss_dssp HHHHHHHTCEEEEE------ESCHHHHHHHCSEE
T ss_pred HHHHHhcCCEEEEE------CCCHHHHHHhCCEE
Confidence 8875 4 9999999 99999999999994
No 19
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=5.6e-35 Score=233.07 Aligned_cols=156 Identities=17% Similarity=0.181 Sum_probs=119.2
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh-ccCCceeeEEEeec--CCcccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI-RQGGQRVGFEVVTL--DDRRAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~-~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~~ 77 (193)
|+|++|++++|+||||||||||+|+|+|+++|++|+|.++|.++... ...++.+||+||++ .+..++.+++.+...
T Consensus 36 l~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~- 114 (256)
T 1vpl_A 36 FEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAG- 114 (256)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHH-
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHH-
Confidence 57899999999999999999999999999999999999999987421 22245799999976 233466666543210
Q ss_pred CCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHHhC
Q 029421 78 SYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILES 136 (193)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~ 136 (193)
..............++++.+++.+.. ++.+|+++||||| ++||+.++..+.++++.+++
T Consensus 115 ~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~ 194 (256)
T 1vpl_A 115 FYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ 194 (256)
T ss_dssp HHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH
T ss_pred HcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHh
Confidence 00111111112344566777765431 8899999999999 69999999999999998865
Q ss_pred -CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 137 -NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 137 -g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
|.|||++ |||++++..+||++
T Consensus 195 ~g~tiiiv------tHd~~~~~~~~d~v 216 (256)
T 1vpl_A 195 EGLTILVS------SHNMLEVEFLCDRI 216 (256)
T ss_dssp TTCEEEEE------ECCHHHHTTTCSEE
T ss_pred CCCEEEEE------cCCHHHHHHHCCEE
Confidence 9999999 99999999999983
No 20
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=1.7e-34 Score=231.45 Aligned_cols=154 Identities=14% Similarity=0.134 Sum_probs=118.7
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecC--CcccccccccCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLD--DRRAPLASINASSP 76 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~ 76 (193)
|+|++|++++|+||||||||||+|+|+|+++|++|+|.++|+++... ...++.++|++|++. ...++.+++.+...
T Consensus 32 l~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~ 111 (266)
T 4g1u_C 32 LHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRA 111 (266)
T ss_dssp EEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGT
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhh
Confidence 57899999999999999999999999999999999999999987432 223456899999762 33455666544321
Q ss_pred CCCCCCcccceeeehhhhhhhcccccc--------------------cCC------CCCEEEEecC-CCccccccchHHH
Q 029421 77 ESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGA------DTDLFVIDEV-GKMELFSSSFFPA 129 (193)
Q Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~------~p~llllDEp-~~LD~~~~~~~~~ 129 (193)
.. ..........+.++.+++..+. ++. +|++|||||| +|||+.++..+.+
T Consensus 112 ~~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~ 188 (266)
T 4g1u_C 112 PY---GGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLR 188 (266)
T ss_dssp TS---CSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHH
T ss_pred hc---CcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHH
Confidence 11 1111223344566666665432 666 9999999999 6999999999999
Q ss_pred HHHHHhC--CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 130 VLRILES--NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 130 ll~~l~~--g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
+++.+++ |+|||++ |||++++.++||++
T Consensus 189 ~l~~l~~~~~~tvi~v------tHdl~~~~~~~d~v 218 (266)
T 4g1u_C 189 LLRQLTRQEPLAVCCV------LHDLNLAALYADRI 218 (266)
T ss_dssp HHHHHHHHSSEEEEEE------CSCHHHHHHHCSEE
T ss_pred HHHHHHHcCCCEEEEE------EcCHHHHHHhCCEE
Confidence 9998864 5799999 99999999999994
No 21
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=1.1e-34 Score=240.23 Aligned_cols=153 Identities=12% Similarity=0.197 Sum_probs=122.6
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeec--CCcccccccccCCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTL--DDRRAPLASINASSPES 78 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~~~ 78 (193)
|+|++|++++|+||||||||||+|+|+|+++|++|+|.++|+++......++++||+||++ ++.+++.+|+.+....
T Consensus 21 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~- 99 (348)
T 3d31_A 21 LKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRM- 99 (348)
T ss_dssp EEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHH-
T ss_pred EEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHH-
Confidence 5789999999999999999999999999999999999999998754333356799999986 4456777776543210
Q ss_pred CCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh-C
Q 029421 79 YRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE-S 136 (193)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~-~ 136 (193)
..... . ....++++.+++.++. ++.+|++|||||| ++||+..+..+.++++.+. +
T Consensus 100 ~~~~~--~-~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~ 176 (348)
T 3d31_A 100 KKIKD--P-KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKK 176 (348)
T ss_dssp HCCCC--H-HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHH
T ss_pred cCCCH--H-HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHh
Confidence 00111 1 3445677777775432 8999999999999 7999999999999998875 4
Q ss_pred -CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 137 -NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 137 -g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
|.|+|++ |||.+++..+||++
T Consensus 177 ~g~tii~v------THd~~~~~~~adri 198 (348)
T 3d31_A 177 NKLTVLHI------THDQTEARIMADRI 198 (348)
T ss_dssp TTCEEEEE------ESCHHHHHHHCSEE
T ss_pred cCCEEEEE------eCCHHHHHHhCCEE
Confidence 9999999 99999999999983
No 22
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=2.2e-34 Score=223.95 Aligned_cols=151 Identities=17% Similarity=0.192 Sum_probs=117.0
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecC--CcccccccccCCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD--DRRAPLASINASSPES 78 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~~~ 78 (193)
|+|++|++++|+||||||||||+|+|+|+++|++|+|.++|.++. ..++.++|+||++. +..++.+++.+....
T Consensus 30 l~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~---~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~- 105 (214)
T 1sgw_A 30 MTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT---KVKGKIFFLPEEIIVPRKISVEDYLKAVASL- 105 (214)
T ss_dssp EEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG---GGGGGEEEECSSCCCCTTSBHHHHHHHHHHH-
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh---hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHh-
Confidence 578999999999999999999999999999999999999998875 23567999999863 334566665432110
Q ss_pred CCCCcccceeeehhhhhhhcccc-------cc------------cCCCCCEEEEecC-CCccccccchHHHHHHHHhC-C
Q 029421 79 YRWPTVGRYKVDVASFEAIALPE-------LQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILES-N 137 (193)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~l~~-------~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~-g 137 (193)
... ... .....++++.+++.. ++ ++.+|+++||||| ++||+.++..+.++++.+++ |
T Consensus 106 ~~~-~~~-~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g 183 (214)
T 1sgw_A 106 YGV-KVN-KNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEK 183 (214)
T ss_dssp TTC-CCC-HHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHH
T ss_pred cCC-chH-HHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCC
Confidence 000 111 122345566666542 22 8899999999999 69999999999999998875 8
Q ss_pred CcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 138 IPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 138 ~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.|||++ |||++++..+||++
T Consensus 184 ~tiiiv------tHd~~~~~~~~d~v 203 (214)
T 1sgw_A 184 GIVIIS------SREELSYCDVNENL 203 (214)
T ss_dssp SEEEEE------ESSCCTTSSEEEEG
T ss_pred CEEEEE------eCCHHHHHHhCCEE
Confidence 999999 99999998888874
No 23
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.97 E-value=9e-34 Score=228.71 Aligned_cols=157 Identities=14% Similarity=0.157 Sum_probs=118.6
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEch--h--hccCCceeeEEEeecC--C--ccccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTG--E--IRQGGQRVGFEVVTLD--D--RRAPLASIN 72 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~--~--~~~~~~~ig~~~q~~~--~--~~~~~~~~~ 72 (193)
|+|++|++++|+||||||||||+|+|+|+++|++|+|.++|.++. . ....++.+||+||++. . ..++.+++.
T Consensus 42 l~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~ 121 (279)
T 2ihy_A 42 WQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVI 121 (279)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHH
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHH
Confidence 578999999999999999999999999999999999999998764 2 1223457999999852 1 236667765
Q ss_pred CCCCCC---CCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHH
Q 029421 73 ASSPES---YRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFP 128 (193)
Q Consensus 73 ~~~~~~---~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~ 128 (193)
+..... .............+.++.+++.... ++.+|++|||||| ++||+.++..+.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~ 201 (279)
T 2ihy_A 122 SGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLL 201 (279)
T ss_dssp TTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHH
T ss_pred hhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHH
Confidence 532110 0001111122344567777765432 8899999999999 699999999999
Q ss_pred HHHHHHhC-CCcE--EEEecCCCCCCChhHHHHHhcCC
Q 029421 129 AVLRILES-NIPV--LASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 129 ~ll~~l~~-g~tv--l~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
++++.+++ |+|| |++ |||++++.++||++
T Consensus 202 ~~l~~l~~~g~tv~~iiv------tHd~~~~~~~~d~v 233 (279)
T 2ihy_A 202 SILDSLSDSYPTLAMIYV------THFIEEITANFSKI 233 (279)
T ss_dssp HHHHHHHHHCTTCEEEEE------ESCGGGCCTTCCEE
T ss_pred HHHHHHHHCCCEEEEEEE------ecCHHHHHHhCCEE
Confidence 99998866 9999 999 99999998999983
No 24
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.97 E-value=3.1e-33 Score=222.20 Aligned_cols=150 Identities=17% Similarity=0.195 Sum_probs=117.6
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecC--CcccccccccCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLD--DRRAPLASINASSP 76 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~ 76 (193)
|+|++|++++|+||||||||||+|+|+|+++|+ |+|.++|.++... ...++++||+||++. ...++.+++.+...
T Consensus 21 l~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~ 99 (249)
T 2qi9_C 21 GEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQH 99 (249)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCS
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHHHHHhhc
Confidence 578999999999999999999999999999999 9999999987422 223457999999873 33466666554321
Q ss_pred CCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCC-------EEEEecC-CCccccccchHH
Q 029421 77 ESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTD-------LFVIDEV-GKMELFSSSFFP 128 (193)
Q Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~-------llllDEp-~~LD~~~~~~~~ 128 (193)
. .. . .....+.++.+++.++. ++.+|+ ++||||| ++||+.++..+.
T Consensus 100 ~--~~---~-~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~ 173 (249)
T 2qi9_C 100 D--KT---R-TELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALD 173 (249)
T ss_dssp S--TT---C-HHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHH
T ss_pred c--CC---c-HHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHH
Confidence 1 00 1 22344566666665331 778999 9999999 699999999999
Q ss_pred HHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 129 AVLRILES-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 129 ~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
++++.+++ |+|||++ |||++.+.++||++
T Consensus 174 ~~l~~l~~~g~tviiv------tHd~~~~~~~~d~v 203 (249)
T 2qi9_C 174 KILSALSQQGLAIVMS------SHDLNHTLRHAHRA 203 (249)
T ss_dssp HHHHHHHHTTCEEEEE------CSCHHHHHHHCSEE
T ss_pred HHHHHHHhCCCEEEEE------eCCHHHHHHhCCEE
Confidence 99998865 9999999 99999999999983
No 25
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.97 E-value=5.5e-32 Score=214.33 Aligned_cols=165 Identities=13% Similarity=0.166 Sum_probs=118.7
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCC-cccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDD-RRAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~ 77 (193)
|+|++|++++|+||||||||||+|+|+|+++|++|+|.++|.++... ...++.++|+||++.. ..++.+++.+....
T Consensus 23 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~ 102 (243)
T 1mv5_A 23 FEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEG 102 (243)
T ss_dssp EEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEHHHHTTSCTTS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCccccccHHHHHhhhccC
Confidence 57899999999999999999999999999999999999999987432 2345679999998721 23566665543110
Q ss_pred CCCCCcccceeeehhhhhhhccc-------------------ccc------------cCCCCCEEEEecC-CCccccccc
Q 029421 78 SYRWPTVGRYKVDVASFEAIALP-------------------ELQ------------VGADTDLFVIDEV-GKMELFSSS 125 (193)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~l~-------------------~~~------------l~~~p~llllDEp-~~LD~~~~~ 125 (193)
... .....+.++.+++. .++ ++.+|+++||||| ++||+.++.
T Consensus 103 --~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~ 176 (243)
T 1mv5_A 103 --DYT----DEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESES 176 (243)
T ss_dssp --CSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCC
T ss_pred --CCC----HHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHH
Confidence 000 01112222222221 222 7889999999999 699999999
Q ss_pred hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHHH
Q 029421 126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLKD 180 (193)
Q Consensus 126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~~ 180 (193)
.+.++++.+.+|+|||++ |||++.+. .||++ ++.+ +..++.+++..
T Consensus 177 ~i~~~l~~~~~~~tvi~v------tH~~~~~~-~~d~v~~l~~G~i--~~~g~~~~~~~ 226 (243)
T 1mv5_A 177 MVQKALDSLMKGRTTLVI------AHRLSTIV-DADKIYFIEKGQI--TGSGKHNELVA 226 (243)
T ss_dssp HHHHHHHHHHTTSEEEEE------CCSHHHHH-HCSEEEEEETTEE--CCCSCHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEE------eCChHHHH-hCCEEEEEECCEE--EEeCCHHHHHh
Confidence 999999887779999999 99998775 59883 2322 33455555544
No 26
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.97 E-value=2e-32 Score=220.10 Aligned_cols=156 Identities=12% Similarity=0.043 Sum_probs=113.2
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecC-CcccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLD-DRRAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~-~~~~~~~~~~~~~~~ 77 (193)
|+|++|++++|+||||||||||+|+|+|+++|++|+|.++|.++... ...++.+||+||++. ...++.+++.+....
T Consensus 40 l~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~ 119 (271)
T 2ixe_A 40 FTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTR 119 (271)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSSBHHHHHHTTCSS
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEEEEecCCccccccHHHHHhhhccc
Confidence 57899999999999999999999999999999999999999987432 223457999999862 124666776553221
Q ss_pred CCCCCccc---ceeeehhhhhhh--cccc--------cc------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421 78 SYRWPTVG---RYKVDVASFEAI--ALPE--------LQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVL 131 (193)
Q Consensus 78 ~~~~~~~~---~~~~~~~~l~~~--~l~~--------~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll 131 (193)
........ ......+.++.+ ++.. ++ |+.+|++|||||| ++||+.++..+.+++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l 199 (271)
T 2ixe_A 120 TPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLL 199 (271)
T ss_dssp CCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHH
Confidence 10000000 001122333333 3321 22 8899999999999 699999999999999
Q ss_pred HHHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 132 RILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 132 ~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
+.+. + |+|||++ |||++.+. .||++
T Consensus 200 ~~~~~~~g~tviiv------tHd~~~~~-~~d~v 226 (271)
T 2ixe_A 200 YESPEWASRTVLLI------TQQLSLAE-RAHHI 226 (271)
T ss_dssp HHCTTTTTSEEEEE------CSCHHHHT-TCSEE
T ss_pred HHHHhhcCCEEEEE------eCCHHHHH-hCCEE
Confidence 9885 3 8999999 99998876 48883
No 27
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.97 E-value=2.7e-32 Score=216.58 Aligned_cols=149 Identities=13% Similarity=0.164 Sum_probs=111.5
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecC-CcccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLD-DRRAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~-~~~~~~~~~~~~~~~ 77 (193)
|+|++|++++|+||||||||||+|+|+|+++|++|+|.++|.++... ...++.+||+||++. ...++.+++.+....
T Consensus 30 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~ 109 (247)
T 2ff7_A 30 LSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPG 109 (247)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBHHHHHTTTCTT
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCccccccHHHHHhccCCC
Confidence 57899999999999999999999999999999999999999987432 223467999999862 123666666543210
Q ss_pred CCCCCcccceeeehhhhhhhcc-------------------cccc------------cCCCCCEEEEecC-CCccccccc
Q 029421 78 SYRWPTVGRYKVDVASFEAIAL-------------------PELQ------------VGADTDLFVIDEV-GKMELFSSS 125 (193)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~l-------------------~~~~------------l~~~p~llllDEp-~~LD~~~~~ 125 (193)
.. .....+.++.+++ ..++ ++.+|+++||||| ++||+.++.
T Consensus 110 ---~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~ 182 (247)
T 2ff7_A 110 ---MS----VEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEH 182 (247)
T ss_dssp ---CC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHH
T ss_pred ---CC----HHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 00 0111122222221 1222 8899999999999 699999999
Q ss_pred hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+.++++.+++|+|||++ |||++.+. .||++
T Consensus 183 ~i~~~l~~~~~g~tviiv------tH~~~~~~-~~d~v 213 (247)
T 2ff7_A 183 VIMRNMHKICKGRTVIII------AHRLSTVK-NADRI 213 (247)
T ss_dssp HHHHHHHHHHTTSEEEEE------CSSGGGGT-TSSEE
T ss_pred HHHHHHHHHcCCCEEEEE------eCCHHHHH-hCCEE
Confidence 999999988669999999 99998875 48883
No 28
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.97 E-value=2.5e-32 Score=217.50 Aligned_cols=146 Identities=21% Similarity=0.308 Sum_probs=112.2
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecC--CcccccccccCCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD--DRRAPLASINASSPES 78 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~~~ 78 (193)
|+|++|++++|+||||||||||+|+|+|+++|++|+|.+ ++.+||+||++. +..++.+++.+.....
T Consensus 26 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~-----------~~~i~~v~q~~~~~~~~tv~enl~~~~~~~ 94 (253)
T 2nq2_C 26 FDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV-----------YQSIGFVPQFFSSPFAYSVLDIVLMGRSTH 94 (253)
T ss_dssp EEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEE-----------CSCEEEECSCCCCSSCCBHHHHHHGGGGGG
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE-----------eccEEEEcCCCccCCCCCHHHHHHHhhhhh
Confidence 578999999999999999999999999999999999971 356999999862 3446666654432110
Q ss_pred CC---CCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHH
Q 029421 79 YR---WPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRIL 134 (193)
Q Consensus 79 ~~---~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l 134 (193)
.. ...........++++.+++.+.. ++.+|++|||||| ++||+.++..+.++++.+
T Consensus 95 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l 174 (253)
T 2nq2_C 95 INTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDL 174 (253)
T ss_dssp SCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHH
T ss_pred cccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 00 01111122344566777765432 8899999999999 699999999999999887
Q ss_pred h-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 135 E-S-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 135 ~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
+ + |+|||++ |||++++.++||++
T Consensus 175 ~~~~g~tvi~v------tHd~~~~~~~~d~v 199 (253)
T 2nq2_C 175 AQSQNMTVVFT------THQPNQVVAIANKT 199 (253)
T ss_dssp HHTSCCEEEEE------ESCHHHHHHHCSEE
T ss_pred HHhcCCEEEEE------ecCHHHHHHhCCEE
Confidence 5 4 8999999 99999999999983
No 29
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.97 E-value=2.2e-32 Score=217.43 Aligned_cols=157 Identities=11% Similarity=0.098 Sum_probs=112.5
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhh--cccCCCCeEEeceEchhhc---cCCceeeEEEeecC--CcccccccccC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLES--LKASNPSLKVQGFYTGEIR---QGGQRVGFEVVTLD--DRRAPLASINA 73 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl--~~~~~G~i~~~g~~~~~~~---~~~~~ig~~~q~~~--~~~~~~~~~~~ 73 (193)
|+|++|++++|+||||||||||+|+|+|+ ++|++|+|.++|.++.... ..+..++|+||++. +..++.+++.+
T Consensus 24 l~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~ 103 (250)
T 2d2e_A 24 LVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIANFLRL 103 (250)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHH
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCccccCCCHHHHHHH
Confidence 57899999999999999999999999998 7999999999999874321 11235889999863 33444454432
Q ss_pred CCCCCCCC--Ccccceeeehhhhhhhccc---------c-cc------------cCCCCCEEEEecC-CCccccccchHH
Q 029421 74 SSPESYRW--PTVGRYKVDVASFEAIALP---------E-LQ------------VGADTDLFVIDEV-GKMELFSSSFFP 128 (193)
Q Consensus 74 ~~~~~~~~--~~~~~~~~~~~~l~~~~l~---------~-~~------------l~~~p~llllDEp-~~LD~~~~~~~~ 128 (193)
........ ..........+.++.+++. . ++ ++.+|+++||||| ++||+.++..+.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~ 183 (250)
T 2d2e_A 104 ALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVA 183 (250)
T ss_dssp HHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHH
T ss_pred HHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHH
Confidence 11000000 0001112233455555552 1 33 7889999999999 699999999999
Q ss_pred HHHHHHhC-CCcEEEEecCCCCCCChhHHHHH-hcCC
Q 029421 129 AVLRILES-NIPVLASIPAPKSGRDIPAVARL-RNHP 163 (193)
Q Consensus 129 ~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~-~d~~ 163 (193)
++++.+++ |+|||++ |||++.+..+ ||++
T Consensus 184 ~~l~~l~~~g~tvi~v------tHd~~~~~~~~~d~v 214 (250)
T 2d2e_A 184 RGVNAMRGPNFGALVI------THYQRILNYIQPDKV 214 (250)
T ss_dssp HHHHHHCSTTCEEEEE------CSSSGGGGTSCCSEE
T ss_pred HHHHHHHhcCCEEEEE------ecCHHHHHHhcCCEE
Confidence 99999876 9999999 9999988887 5873
No 30
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.97 E-value=9e-32 Score=219.33 Aligned_cols=170 Identities=14% Similarity=0.183 Sum_probs=119.2
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCC-cccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDD-RRAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~ 77 (193)
|+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ...++.+||+||++.. ..++.+|+.+....
T Consensus 75 l~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~ 154 (306)
T 3nh6_A 75 FTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVT 154 (306)
T ss_dssp EEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTT
T ss_pred EEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhccc
Confidence 57899999999999999999999999999999999999999997532 2335679999998732 23566666553321
Q ss_pred CCCCCcccce---eeehhhhhhh--ccc--------ccc------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421 78 SYRWPTVGRY---KVDVASFEAI--ALP--------ELQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVL 131 (193)
Q Consensus 78 ~~~~~~~~~~---~~~~~~l~~~--~l~--------~~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll 131 (193)
.. ....... ....+.+..+ ++. .++ ++.+|++|||||| ++||+.++..+.+.+
T Consensus 155 ~~-~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l 233 (306)
T 3nh6_A 155 AG-NDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASL 233 (306)
T ss_dssp CC-HHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHH
T ss_pred CC-HHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHH
Confidence 10 0000000 0001111111 111 111 7889999999999 699999999999999
Q ss_pred HHHhCCCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHHH
Q 029421 132 RILESNIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLKD 180 (193)
Q Consensus 132 ~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~~ 180 (193)
+.+.+++|+|++ ||++..+.. ||++ +|.++ ..++.+++.+
T Consensus 234 ~~l~~~~Tvi~i------tH~l~~~~~-aD~i~vl~~G~iv--~~G~~~el~~ 277 (306)
T 3nh6_A 234 AKVCANRTTIVV------AHRLSTVVN-ADQILVIKDGCIV--ERGRHEALLS 277 (306)
T ss_dssp HHHHTTSEEEEE------CCSHHHHHT-CSEEEEEETTEEE--EEECHHHHHH
T ss_pred HHHcCCCEEEEE------EcChHHHHc-CCEEEEEECCEEE--EECCHHHHHh
Confidence 888778999999 999998876 9984 33333 3345555554
No 31
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.96 E-value=6.5e-32 Score=216.66 Aligned_cols=157 Identities=10% Similarity=0.126 Sum_probs=111.9
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhh--cccCCCCeEEeceEchhhc--c-CCceeeEEEeecC--CcccccccccC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLES--LKASNPSLKVQGFYTGEIR--Q-GGQRVGFEVVTLD--DRRAPLASINA 73 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl--~~~~~G~i~~~g~~~~~~~--~-~~~~ig~~~q~~~--~~~~~~~~~~~ 73 (193)
|+|++|++++|+||||||||||+|+|+|+ ++|++|+|.++|.++.... . .+..++|+||++. +..++.+++.+
T Consensus 41 l~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~ 120 (267)
T 2zu0_C 41 LDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQT 120 (267)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHH
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCccccccccHHHHHHH
Confidence 57899999999999999999999999999 4789999999999874321 1 1235899999862 23333333221
Q ss_pred CCCCC---CCC---Ccccceeeehhhhhhhccc-c---------cc------------cCCCCCEEEEecC-CCcccccc
Q 029421 74 SSPES---YRW---PTVGRYKVDVASFEAIALP-E---------LQ------------VGADTDLFVIDEV-GKMELFSS 124 (193)
Q Consensus 74 ~~~~~---~~~---~~~~~~~~~~~~l~~~~l~-~---------~~------------l~~~p~llllDEp-~~LD~~~~ 124 (193)
..... ... ..........+.++.+++. . ++ ++.+|++|||||| ++||+.++
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~ 200 (267)
T 2zu0_C 121 ALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDAL 200 (267)
T ss_dssp HHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHH
T ss_pred HHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHH
Confidence 10000 000 0001112234455555553 1 22 7889999999999 69999999
Q ss_pred chHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHH-hcCC
Q 029421 125 SFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARL-RNHP 163 (193)
Q Consensus 125 ~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~-~d~~ 163 (193)
..+.++++.+++ |+|||++ |||++.+..+ ||++
T Consensus 201 ~~l~~~l~~l~~~g~tviiv------tHd~~~~~~~~~d~v 235 (267)
T 2zu0_C 201 KVVADGVNSLRDGKRSFIIV------THYQRILDYIKPDYV 235 (267)
T ss_dssp HHHHHHHHTTCCSSCEEEEE------CSSGGGGGTSCCSEE
T ss_pred HHHHHHHHHHHhcCCEEEEE------eeCHHHHHhhcCCEE
Confidence 999999998866 9999999 9999988776 8873
No 32
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.96 E-value=1.3e-31 Score=214.40 Aligned_cols=146 Identities=12% Similarity=0.159 Sum_probs=113.2
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceee-EEEeecCCcccccccccCCCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVG-FEVVTLDDRRAPLASINASSPESY 79 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig-~~~q~~~~~~~~~~~~~~~~~~~~ 79 (193)
|+++ |++++|+||||||||||+|+|+|++ |++|+|.++|.++... ..+++++ |+||++....++.+++.+... .
T Consensus 26 l~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~-~~~~~i~~~v~Q~~~l~~tv~enl~~~~~-~- 100 (263)
T 2pjz_A 26 LEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI-RNYIRYSTNLPEAYEIGVTVNDIVYLYEE-L- 100 (263)
T ss_dssp EEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC-SCCTTEEECCGGGSCTTSBHHHHHHHHHH-H-
T ss_pred EEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch-HHhhheEEEeCCCCccCCcHHHHHHHhhh-h-
Confidence 5789 9999999999999999999999999 9999999999887533 2256799 999987324455555433110 0
Q ss_pred CCCcccceeeehhhhhhhccc-ccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHHhCC
Q 029421 80 RWPTVGRYKVDVASFEAIALP-ELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILESN 137 (193)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~l~-~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~g 137 (193)
.. .......+.++.+++. +.. ++.+|+++||||| ++||+.++..+.++++.+++
T Consensus 101 --~~-~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~- 176 (263)
T 2pjz_A 101 --KG-LDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK- 176 (263)
T ss_dssp --TC-CCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS-
T ss_pred --cc-hHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC-
Confidence 00 1112234566666665 321 8899999999999 69999999999999988765
Q ss_pred CcEEEEecCCCCCCChhHHHHHhc-C
Q 029421 138 IPVLASIPAPKSGRDIPAVARLRN-H 162 (193)
Q Consensus 138 ~tvl~~~~~~~~tHd~~~~~~~~d-~ 162 (193)
|||++ |||++++.++|| +
T Consensus 177 -tviiv------tHd~~~~~~~~d~~ 195 (263)
T 2pjz_A 177 -EGILV------THELDMLNLYKEYK 195 (263)
T ss_dssp -EEEEE------ESCGGGGGGCTTSE
T ss_pred -cEEEE------EcCHHHHHHhcCce
Confidence 99999 999999989999 7
No 33
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.96 E-value=1.2e-30 Score=208.53 Aligned_cols=148 Identities=13% Similarity=0.148 Sum_probs=108.7
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCC-cccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDD-RRAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~ 77 (193)
|+|++|++++|+||||||||||+|+|+|+++| +|+|.++|.++... ...++.++|+||++.. ..++.+++.+....
T Consensus 41 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~ 119 (260)
T 2ghi_A 41 FFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLD 119 (260)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCSEEHHHHHHTTCTT
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccccCHHHHHhccCCC
Confidence 57899999999999999999999999999987 79999999987432 2234679999998721 23566665543210
Q ss_pred CCCCCcccceeeehhhhhhhcc-------------------cccc------------cCCCCCEEEEecC-CCccccccc
Q 029421 78 SYRWPTVGRYKVDVASFEAIAL-------------------PELQ------------VGADTDLFVIDEV-GKMELFSSS 125 (193)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~l-------------------~~~~------------l~~~p~llllDEp-~~LD~~~~~ 125 (193)
... ....+.++.+++ ..++ ++.+|+++||||| ++||+.++.
T Consensus 120 ---~~~----~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~ 192 (260)
T 2ghi_A 120 ---ATD----EEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEY 192 (260)
T ss_dssp ---CCH----HHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHH
T ss_pred ---CCH----HHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHH
Confidence 000 011111111111 1222 7899999999999 699999999
Q ss_pred hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+.++++.+++|+|||++ |||++.+. .||++
T Consensus 193 ~i~~~l~~l~~~~tviiv------tH~~~~~~-~~d~i 223 (260)
T 2ghi_A 193 LFQKAVEDLRKNRTLIII------AHRLSTIS-SAESI 223 (260)
T ss_dssp HHHHHHHHHTTTSEEEEE------CSSGGGST-TCSEE
T ss_pred HHHHHHHHhcCCCEEEEE------cCCHHHHH-hCCEE
Confidence 999999988668999999 99998875 58873
No 34
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.96 E-value=1.9e-30 Score=204.77 Aligned_cols=143 Identities=13% Similarity=0.157 Sum_probs=101.5
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecC-CcccccccccCCCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD-DRRAPLASINASSPESY 79 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~-~~~~~~~~~~~~~~~~~ 79 (193)
|+|++|++++|+||||||||||+|+|+|+++|++|+|.++| .+||+||++. ...++.+++.+....
T Consensus 26 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-----------~i~~v~Q~~~~~~~tv~enl~~~~~~-- 92 (237)
T 2cbz_A 26 FSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-----------SVAYVPQQAWIQNDSLRENILFGCQL-- 92 (237)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-----------CEEEECSSCCCCSEEHHHHHHTTSCC--
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-----------EEEEEcCCCcCCCcCHHHHhhCcccc--
Confidence 57899999999999999999999999999999999999988 3899999862 234556665443211
Q ss_pred CCCcccceeeehhhhhhhcc-------------cccc------------cCCCCCEEEEecC-CCccccccchHHHHHH-
Q 029421 80 RWPTVGRYKVDVASFEAIAL-------------PELQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVLR- 132 (193)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~l-------------~~~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~- 132 (193)
..............++.+++ ..++ ++.+|+++||||| ++||+.++..+.+++.
T Consensus 93 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~ 172 (237)
T 2cbz_A 93 EEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIG 172 (237)
T ss_dssp CTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHH
Confidence 00000000000011111111 1222 7899999999999 6999999988888774
Q ss_pred --HHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 133 --ILESNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 133 --~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+.+|+|||++ |||++.+. .||++
T Consensus 173 ~~~~~~~~tviiv------tH~~~~~~-~~d~v 198 (237)
T 2cbz_A 173 PKGMLKNKTRILV------THSMSYLP-QVDVI 198 (237)
T ss_dssp TTSTTTTSEEEEE------CSCSTTGG-GSSEE
T ss_pred HHhhcCCCEEEEE------ecChHHHH-hCCEE
Confidence 34448999999 99998764 68883
No 35
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.95 E-value=5e-30 Score=201.39 Aligned_cols=145 Identities=18% Similarity=0.165 Sum_probs=101.1
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecCC-cccccccccCCCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDD-RRAPLASINASSPESY 79 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~~~ 79 (193)
|+|++|++++|+||||||||||+|+|+|+++|++|+|.++| +++|+||++.. ..++.+++.+......
T Consensus 29 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-----------~i~~v~q~~~~~~~tv~enl~~~~~~~~ 97 (229)
T 2pze_A 29 FKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-----------RISFCSQFSWIMPGTIKENIIFGVSYDE 97 (229)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-----------CEEEECSSCCCCSBCHHHHHHTTSCCCH
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-----------EEEEEecCCcccCCCHHHHhhccCCcCh
Confidence 57899999999999999999999999999999999999987 48999998621 2366666554321000
Q ss_pred CCCccc-ceeeehhhhhhhc----------ccccc------------cCCCCCEEEEecC-CCccccccchHHHH-HHHH
Q 029421 80 RWPTVG-RYKVDVASFEAIA----------LPELQ------------VGADTDLFVIDEV-GKMELFSSSFFPAV-LRIL 134 (193)
Q Consensus 80 ~~~~~~-~~~~~~~~l~~~~----------l~~~~------------l~~~p~llllDEp-~~LD~~~~~~~~~l-l~~l 134 (193)
...... ......+.++.+. ...++ ++.+|+++||||| ++||+.++..+.++ ++.+
T Consensus 98 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~ 177 (229)
T 2pze_A 98 YRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKL 177 (229)
T ss_dssp HHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHh
Confidence 000000 0000111111111 01222 7899999999999 69999998888775 4555
Q ss_pred hCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 135 ESNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 135 ~~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+|+|||++ |||++.+. .||++
T Consensus 178 ~~~~tvi~v------tH~~~~~~-~~d~v 199 (229)
T 2pze_A 178 MANKTRILV------TSKMEHLK-KADKI 199 (229)
T ss_dssp TTTSEEEEE------CCCHHHHH-HCSEE
T ss_pred hCCCEEEEE------cCChHHHH-hCCEE
Confidence 458999999 99998875 58883
No 36
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.95 E-value=6.2e-29 Score=218.62 Aligned_cols=165 Identities=15% Similarity=0.172 Sum_probs=119.4
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCC-cccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDD-RRAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~ 77 (193)
|++++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ...++++||+||++.. ..+..+|+.+....
T Consensus 364 l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~ 443 (582)
T 3b5x_A 364 FSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEG 443 (582)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCCC
Confidence 57899999999999999999999999999999999999999987432 2345679999998731 23666666543200
Q ss_pred CCCCCcccceeeehhhhhhhccc-------------------ccc------------cCCCCCEEEEecC-CCccccccc
Q 029421 78 SYRWPTVGRYKVDVASFEAIALP-------------------ELQ------------VGADTDLFVIDEV-GKMELFSSS 125 (193)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~l~-------------------~~~------------l~~~p~llllDEp-~~LD~~~~~ 125 (193)
... .....+.++.+++. .++ ++.+|++++|||| ++||+.++.
T Consensus 444 --~~~----~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~ 517 (582)
T 3b5x_A 444 --EYT----REQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESER 517 (582)
T ss_pred --CCC----HHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHH
Confidence 000 01112222222221 122 8899999999999 699999999
Q ss_pred hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHHH
Q 029421 126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLKD 180 (193)
Q Consensus 126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~~ 180 (193)
.+.+.++.+.+|+|+|++ ||+++.+. .||++ +|.++ ..++.+++.+
T Consensus 518 ~i~~~l~~~~~~~tvi~i------tH~~~~~~-~~d~i~~l~~G~i~--~~g~~~~l~~ 567 (582)
T 3b5x_A 518 AIQAALDELQKNKTVLVI------AHRLSTIE-QADEILVVDEGEII--ERGRHADLLA 567 (582)
T ss_pred HHHHHHHHHcCCCEEEEE------ecCHHHHH-hCCEEEEEECCEEE--EECCHHHHHh
Confidence 999999888779999999 99998876 69983 34443 3345555543
No 37
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.95 E-value=1.4e-29 Score=212.45 Aligned_cols=147 Identities=15% Similarity=0.179 Sum_probs=109.2
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc--cCCceeeEEEeecCC-cccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR--QGGQRVGFEVVTLDD-RRAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~--~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~ 77 (193)
|+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++.... ..++.+||+||++.. ..++.+|+.+...
T Consensus 42 l~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~~tv~enl~~~~~- 119 (390)
T 3gd7_A 42 FSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAA- 119 (390)
T ss_dssp EEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCSEEHHHHHCTTCC-
T ss_pred EEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCCEEEEcCCcccCccCHHHHhhhccc-
Confidence 5789999999999999999999999999998 8999999999874322 234679999998732 2355566432111
Q ss_pred CCCCCcccceeeehhhhhhhcccc-------------------cc------------cCCCCCEEEEecC-CCccccccc
Q 029421 78 SYRWPTVGRYKVDVASFEAIALPE-------------------LQ------------VGADTDLFVIDEV-GKMELFSSS 125 (193)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~l~~-------------------~~------------l~~~p~llllDEp-~~LD~~~~~ 125 (193)
. ......+.++.+++.. ++ |+.+|++|||||| ++||+..+.
T Consensus 120 ---~----~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~ 192 (390)
T 3gd7_A 120 ---H----SDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQ 192 (390)
T ss_dssp ---S----CHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHH
T ss_pred ---c----CHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHH
Confidence 0 0111223333333221 22 7899999999999 799999999
Q ss_pred hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+.++++.+..+.|+|++ |||.+.+ .+||++
T Consensus 193 ~l~~~l~~~~~~~tvi~v------tHd~e~~-~~aDri 223 (390)
T 3gd7_A 193 IIRRTLKQAFADCTVILC------EARIEAM-LECDQF 223 (390)
T ss_dssp HHHHHHHTTTTTSCEEEE------CSSSGGG-TTCSEE
T ss_pred HHHHHHHHHhCCCEEEEE------EcCHHHH-HhCCEE
Confidence 999999887668999999 9997644 569984
No 38
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.95 E-value=6.2e-29 Score=218.61 Aligned_cols=165 Identities=16% Similarity=0.178 Sum_probs=119.3
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCC-cccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDD-RRAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~ 77 (193)
|++++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ...+++++|+||++.. ..+..+|+.+....
T Consensus 364 ~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~ 443 (582)
T 3b60_A 364 LKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTE 443 (582)
T ss_dssp EEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCCC
Confidence 57899999999999999999999999999999999999999987432 2335679999998731 23666776553210
Q ss_pred CCCCCcccceeeehhhhhhhccc-------------------ccc------------cCCCCCEEEEecC-CCccccccc
Q 029421 78 SYRWPTVGRYKVDVASFEAIALP-------------------ELQ------------VGADTDLFVIDEV-GKMELFSSS 125 (193)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~l~-------------------~~~------------l~~~p~llllDEp-~~LD~~~~~ 125 (193)
... .+...+.++.+++. .++ ++.+|+++||||| ++||+.++.
T Consensus 444 --~~~----~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~ 517 (582)
T 3b60_A 444 --EYS----REQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESER 517 (582)
T ss_dssp --CCC----HHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHH
T ss_pred --CCC----HHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHH
Confidence 000 01112222222221 122 7899999999999 699999999
Q ss_pred hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHHH
Q 029421 126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLKD 180 (193)
Q Consensus 126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~~ 180 (193)
.+.+.++.+.+|+|+|++ ||+++.+. .||++ +|.++ ..++.+++.+
T Consensus 518 ~i~~~l~~~~~~~tvi~i------tH~~~~~~-~~d~i~~l~~G~i~--~~g~~~~l~~ 567 (582)
T 3b60_A 518 AIQAALDELQKNRTSLVI------AHRLSTIE-QADEIVVVEDGIIV--ERGTHSELLA 567 (582)
T ss_dssp HHHHHHHHHHTTSEEEEE------CSCGGGTT-TCSEEEEEETTEEE--EEECHHHHHH
T ss_pred HHHHHHHHHhCCCEEEEE------eccHHHHH-hCCEEEEEECCEEE--EecCHHHHHH
Confidence 999999888779999999 99998775 68883 34443 2345556544
No 39
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.95 E-value=8.2e-29 Score=218.43 Aligned_cols=170 Identities=14% Similarity=0.203 Sum_probs=119.2
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCC-cccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDD-RRAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~ 77 (193)
|++++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ...++++||+||++.. ..+..+|+.+....
T Consensus 376 l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~ 455 (598)
T 3qf4_B 376 FHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPG 455 (598)
T ss_dssp EECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSSTT
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCCCC
Confidence 57899999999999999999999999999999999999999997533 2345689999998732 23666666543211
Q ss_pred CCCCCcccc---eeeehhhhhhh--ccc--------ccc------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421 78 SYRWPTVGR---YKVDVASFEAI--ALP--------ELQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVL 131 (193)
Q Consensus 78 ~~~~~~~~~---~~~~~~~l~~~--~l~--------~~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll 131 (193)
.. ...... .....+..+.+ |+. .++ ++.+|+++||||| ++||+.++..+.+.+
T Consensus 456 ~~-~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l 534 (598)
T 3qf4_B 456 AT-DEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAM 534 (598)
T ss_dssp CC-TTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHH
T ss_pred CC-HHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHH
Confidence 10 000000 00000111111 111 111 7899999999999 699999999999999
Q ss_pred HHHhCCCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHHH
Q 029421 132 RILESNIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLKD 180 (193)
Q Consensus 132 ~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~~ 180 (193)
+.+.+|+|+|++ ||+++.+.. ||++ +|.+ +..++.+++.+
T Consensus 535 ~~~~~~~t~i~i------tH~l~~~~~-~d~i~~l~~G~i--~~~g~~~~l~~ 578 (598)
T 3qf4_B 535 WKLMEGKTSIII------AHRLNTIKN-ADLIIVLRDGEI--VEMGKHDELIQ 578 (598)
T ss_dssp HHHHTTSEEEEE------SCCTTHHHH-CSEEEEECSSSE--EECSCHHHHHH
T ss_pred HHHcCCCEEEEE------ecCHHHHHc-CCEEEEEECCEE--EEECCHHHHHh
Confidence 888779999999 999998865 9983 3433 33455666554
No 40
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.95 E-value=7.5e-27 Score=178.25 Aligned_cols=179 Identities=42% Similarity=0.708 Sum_probs=120.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecCCcccccccccCCCCCCCCCCccc
Q 029421 6 GKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPLASINASSPESYRWPTVG 85 (193)
Q Consensus 6 Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (193)
|++++|+||||||||||+++|+|+++ ++| |.++|+...+.+..++++||++|+.......+.+..+........+...
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~~~~~~ig~~~~~~~g~~~~l~~~~~~~~~~~~~~~v~ 78 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSRVGLEPPPGKRECRVG 78 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEETTSSEEEEEEEETTSCEEEEEECCCCCCSSSCCEESS
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhHhhhceEEEEEEecccceehhhcccccCCccccccccc
Confidence 78999999999999999999999999 899 9999988755555678899999987433332333222111100111122
Q ss_pred ceeeehhhhhhhcccccc-----cCCCCCEEEEecCCCccccccchHHHHHHHHhCCCcEEE-EecCCCCCCCh--hHHH
Q 029421 86 RYKVDVASFEAIALPELQ-----VGADTDLFVIDEVGKMELFSSSFFPAVLRILESNIPVLA-SIPAPKSGRDI--PAVA 157 (193)
Q Consensus 86 ~~~~~~~~l~~~~l~~~~-----l~~~p~llllDEp~~LD~~~~~~~~~ll~~l~~g~tvl~-~~~~~~~tHd~--~~~~ 157 (193)
.+......++++.+..+. ++.+|+++|+|||+.++.....++..+.+.++...++|+ ++.. +|+. .++.
T Consensus 79 ~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~~~~ilgti~v---sh~~~~~~vd 155 (189)
T 2i3b_A 79 QYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPGTIILGTIPV---PKGKPLALVE 155 (189)
T ss_dssp SSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSSCCEEEECCC---CCSSCCTTHH
T ss_pred eEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhCCCcEEEEEeec---CCCCchHHHH
Confidence 223334455555544333 478999999999755544333444444444555555554 2111 4875 7889
Q ss_pred HHhcCCCcEEEEeCCCChhHHHHHHHHHHHHH
Q 029421 158 RLRNHPGATIFTLSPGNRDSLKDNIYYQLTDA 189 (193)
Q Consensus 158 ~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 189 (193)
+++++.++.++.++..|++.+.+++.+.+.+.
T Consensus 156 ~i~~~~~~~i~~~~~~nr~~~~~~i~~~~~~~ 187 (189)
T 2i3b_A 156 EIRNRKDVKVFNVTKENRNHLLPDIVTCVQSS 187 (189)
T ss_dssp HHHTTCCSEEEECCSSSGGGHHHHHHHHHTTS
T ss_pred HHeecCCcEEEEeChHhHHHHHHHHHHHHHHh
Confidence 99999999999999999999999998877654
No 41
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.95 E-value=1.8e-28 Score=216.21 Aligned_cols=152 Identities=14% Similarity=0.159 Sum_probs=113.5
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCC-cccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDD-RRAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~ 77 (193)
|++++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ...++++||+||++.. ..+..+|+.+....
T Consensus 365 l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~ 444 (595)
T 2yl4_A 365 LSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADD 444 (595)
T ss_dssp EEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEEECSSCCCCSSBHHHHHHTTSSS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceEEEccCCcccCCCHHHHHhhcCCC
Confidence 57899999999999999999999999999999999999999987432 2235679999998731 24666776553221
Q ss_pred CCCCCcccceeeehhhhhhhcc-------------------cccc------------cCCCCCEEEEecC-CCccccccc
Q 029421 78 SYRWPTVGRYKVDVASFEAIAL-------------------PELQ------------VGADTDLFVIDEV-GKMELFSSS 125 (193)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~l-------------------~~~~------------l~~~p~llllDEp-~~LD~~~~~ 125 (193)
.. .. ..+...+.++.+++ ..++ ++.+|+++||||| ++||+.++.
T Consensus 445 ~~---~~-~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~ 520 (595)
T 2yl4_A 445 PS---SV-TAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEY 520 (595)
T ss_dssp TT---TS-CHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHH
T ss_pred cc---cc-CHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHH
Confidence 00 00 01112222332221 1122 7899999999999 699999999
Q ss_pred hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+.+.++.+.+|+|+|++ ||+++.+. .||++
T Consensus 521 ~i~~~l~~~~~~~tvi~i------tH~~~~~~-~~d~i 551 (595)
T 2yl4_A 521 LVQEALDRLMDGRTVLVI------AHRLSTIK-NANMV 551 (595)
T ss_dssp HHHHHHHHHHTTSEEEEE------CCCHHHHH-HSSEE
T ss_pred HHHHHHHHHhcCCEEEEE------ecCHHHHH-cCCEE
Confidence 999999988778999999 99998875 59983
No 42
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.94 E-value=8.2e-29 Score=217.67 Aligned_cols=164 Identities=15% Similarity=0.221 Sum_probs=118.2
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCC-cccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDD-RRAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~ 77 (193)
|++++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ...++++||+||++.. ..+..+|+.+....
T Consensus 362 l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~ 441 (578)
T 4a82_A 362 LSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPT 441 (578)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSS
T ss_pred EEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCCC
Confidence 57899999999999999999999999999999999999999997532 2335679999998732 23666776543211
Q ss_pred CCCCCcccceeeehhhhhhh-----------ccc--------ccc------------cCCCCCEEEEecC-CCccccccc
Q 029421 78 SYRWPTVGRYKVDVASFEAI-----------ALP--------ELQ------------VGADTDLFVIDEV-GKMELFSSS 125 (193)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~-----------~l~--------~~~------------l~~~p~llllDEp-~~LD~~~~~ 125 (193)
. . . ....+.++.. |+. .++ ++.+|++++|||| ++||+.++.
T Consensus 442 ~---~---~-~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~ 514 (578)
T 4a82_A 442 A---T---D-EEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESES 514 (578)
T ss_dssp C---C---H-HHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHH
T ss_pred C---C---H-HHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHH
Confidence 0 0 0 0011111111 110 111 7789999999999 699999998
Q ss_pred hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHHH
Q 029421 126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLKD 180 (193)
Q Consensus 126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~~ 180 (193)
.+.+.++.+.+++|+|++ ||+++.+. .||++ +|.++ ..++.+++.+
T Consensus 515 ~i~~~l~~~~~~~t~i~i------tH~l~~~~-~~d~i~~l~~G~i~--~~g~~~el~~ 564 (578)
T 4a82_A 515 IIQEALDVLSKDRTTLIV------AHRLSTIT-HADKIVVIENGHIV--ETGTHRELIA 564 (578)
T ss_dssp HHHHHHHHHTTTSEEEEE------CSSGGGTT-TCSEEEEEETTEEE--EEECHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEE------ecCHHHHH-cCCEEEEEECCEEE--EECCHHHHHh
Confidence 999999888778999999 99999875 48883 34443 3345556554
No 43
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.94 E-value=2.2e-28 Score=215.25 Aligned_cols=170 Identities=9% Similarity=0.116 Sum_probs=119.3
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCC-cccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDD-RRAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~ 77 (193)
|++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...+++++|+||++.. ..+..+|+.+....
T Consensus 364 l~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~ 443 (587)
T 3qf4_A 364 FSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGRED 443 (587)
T ss_dssp EEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccCCC
Confidence 57899999999999999999999999999999999999999987543 2335779999998732 23566666543221
Q ss_pred CCCCCcccc---eeeehhhhhhh--ccc--------ccc------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421 78 SYRWPTVGR---YKVDVASFEAI--ALP--------ELQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVL 131 (193)
Q Consensus 78 ~~~~~~~~~---~~~~~~~l~~~--~l~--------~~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll 131 (193)
.. ...... .....+.++.+ |+. .++ ++.+|+++||||| ++||+.++..+.+.+
T Consensus 444 ~~-~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l 522 (587)
T 3qf4_A 444 AT-DDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGL 522 (587)
T ss_dssp CC-HHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHH
T ss_pred CC-HHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHH
Confidence 10 000000 00001111111 111 111 7899999999999 699999999999999
Q ss_pred HHHhCCCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHHH
Q 029421 132 RILESNIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLKD 180 (193)
Q Consensus 132 ~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~~ 180 (193)
+.+.+|+|+|++ ||+++.+. .||++ +|.++ ..++.+++.+
T Consensus 523 ~~~~~~~tvi~i------tH~l~~~~-~~d~i~vl~~G~i~--~~g~~~el~~ 566 (587)
T 3qf4_A 523 KRYTKGCTTFII------TQKIPTAL-LADKILVLHEGKVA--GFGTHKELLE 566 (587)
T ss_dssp HHHSTTCEEEEE------ESCHHHHT-TSSEEEEEETTEEE--EEECHHHHHH
T ss_pred HHhCCCCEEEEE------ecChHHHH-hCCEEEEEECCEEE--EECCHHHHHh
Confidence 888779999999 99998875 79984 34443 3345666654
No 44
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.94 E-value=4.9e-28 Score=210.78 Aligned_cols=143 Identities=14% Similarity=0.207 Sum_probs=106.8
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecCC--cccccccccCCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDD--RRAPLASINASSPES 78 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~--~~~~~~~~~~~~~~~ 78 (193)
|+|++||+++|+||||||||||+|+|+|+++|++|+|.+++ ..++|++|+... ..++.+++.......
T Consensus 289 ~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~----------~~i~~~~q~~~~~~~~tv~~~l~~~~~~~ 358 (538)
T 3ozx_A 289 GEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK----------QILSYKPQRIFPNYDGTVQQYLENASKDA 358 (538)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC----------CCEEEECSSCCCCCSSBHHHHHHHHCSST
T ss_pred ceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC----------eeeEeechhcccccCCCHHHHHHHhhhhc
Confidence 35789999999999999999999999999999999998654 357888887532 233344332211000
Q ss_pred CCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh-C
Q 029421 79 YRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE-S 136 (193)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~-~ 136 (193)
. . .......++++.+++.... |+.+|++|||||| ++||+.++..+.++++.+. +
T Consensus 359 ~--~--~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~ 434 (538)
T 3ozx_A 359 L--S--TSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRE 434 (538)
T ss_dssp T--C--TTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH
T ss_pred c--c--hhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHh
Confidence 0 0 0111223455555554321 8899999999999 6999999999999999875 3
Q ss_pred -CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 137 -NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 137 -g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
|+|||++ |||++++..+||++
T Consensus 435 ~g~tvi~v------sHdl~~~~~~aDri 456 (538)
T 3ozx_A 435 RKAVTFII------DHDLSIHDYIADRI 456 (538)
T ss_dssp TTCEEEEE------CSCHHHHHHHCSEE
T ss_pred CCCEEEEE------eCCHHHHHHhCCEE
Confidence 8999999 99999999999994
No 45
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.94 E-value=9.4e-29 Score=200.29 Aligned_cols=142 Identities=18% Similarity=0.185 Sum_probs=99.9
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecCC-cccccccccCCCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDD-RRAPLASINASSPESY 79 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~~~ 79 (193)
|+|++|++++|+||||||||||+|+|+|+++|++|+|.++| +++|+||++.. ..++.+++. ... .
T Consensus 59 l~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g-----------~i~~v~Q~~~l~~~tv~enl~-~~~-~- 124 (290)
T 2bbs_A 59 FKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-----------RISFCSQNSWIMPGTIKENII-GVS-Y- 124 (290)
T ss_dssp EEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-----------CEEEECSSCCCCSSBHHHHHH-TTC-C-
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-----------EEEEEeCCCccCcccHHHHhh-Ccc-c-
Confidence 57899999999999999999999999999999999999987 48999997621 235566654 211 0
Q ss_pred CCCcccce---eeehhhhhhhc----------ccccc------------cCCCCCEEEEecC-CCccccccchHHHH-HH
Q 029421 80 RWPTVGRY---KVDVASFEAIA----------LPELQ------------VGADTDLFVIDEV-GKMELFSSSFFPAV-LR 132 (193)
Q Consensus 80 ~~~~~~~~---~~~~~~l~~~~----------l~~~~------------l~~~p~llllDEp-~~LD~~~~~~~~~l-l~ 132 (193)
........ ....+.++.+. ...++ ++.+|+++||||| ++||+.++..+.++ ++
T Consensus 125 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~ 204 (290)
T 2bbs_A 125 DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVC 204 (290)
T ss_dssp CHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCC
T ss_pred chHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 00000000 00011111111 01222 7899999999999 69999999888775 34
Q ss_pred HHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 133 ILESNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 133 ~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+.+|+|||++ |||++.+. .||++
T Consensus 205 ~~~~~~tviiv------tHd~~~~~-~~d~i 228 (290)
T 2bbs_A 205 KLMANKTRILV------TSKMEHLK-KADKI 228 (290)
T ss_dssp CCTTTSEEEEE------CCCHHHHH-HSSEE
T ss_pred HhhCCCEEEEE------ecCHHHHH-cCCEE
Confidence 44458999999 99998775 59883
No 46
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.94 E-value=1.4e-27 Score=208.06 Aligned_cols=141 Identities=13% Similarity=0.216 Sum_probs=105.5
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecCC--cccccccccCCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDD--RRAPLASINASSPES 78 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~--~~~~~~~~~~~~~~~ 78 (193)
|+|.+||+++|+||||||||||+|+|+|+++|++|+|.+ ...+||+||++.. ..++.++....
T Consensus 307 ~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~-----------~~~i~~v~Q~~~~~~~~tv~~~~~~~---- 371 (538)
T 1yqt_A 307 GEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW-----------DLTVAYKPQYIKADYEGTVYELLSKI---- 371 (538)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC-----------CCCEEEECSSCCCCCSSBHHHHHHHH----
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-----------CceEEEEecCCcCCCCCcHHHHHHhh----
Confidence 357899999999999999999999999999999999975 2368999997632 22332221100
Q ss_pred CCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh-C
Q 029421 79 YRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE-S 136 (193)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~-~ 136 (193)
............++++.+++... + ++.+|++|||||| ++||+.++..+.++++.+. +
T Consensus 372 -~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~ 450 (538)
T 1yqt_A 372 -DASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEK 450 (538)
T ss_dssp -HHHHHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHH
T ss_pred -hccCCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 00000011223345555555432 1 8899999999999 6999999999999999875 4
Q ss_pred -CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 137 -NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 137 -g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
|.|||++ |||++++..+||++
T Consensus 451 ~g~tvi~v------sHd~~~~~~~~drv 472 (538)
T 1yqt_A 451 NEKTALVV------EHDVLMIDYVSDRL 472 (538)
T ss_dssp HTCEEEEE------CSCHHHHHHHCSEE
T ss_pred CCCEEEEE------eCCHHHHHHhCCEE
Confidence 9999999 99999999999984
No 47
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.94 E-value=1.5e-27 Score=210.23 Aligned_cols=141 Identities=13% Similarity=0.210 Sum_probs=106.7
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecCC--cccccccccCCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDD--RRAPLASINASSPES 78 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~--~~~~~~~~~~~~~~~ 78 (193)
|+|.+||+++|+||||||||||+|+|+|+++|++|+|.+ ..++||+||++.. ..++.++....
T Consensus 377 ~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~-----------~~~i~~v~Q~~~~~~~~tv~e~~~~~---- 441 (607)
T 3bk7_A 377 GEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW-----------DLTVAYKPQYIKAEYEGTVYELLSKI---- 441 (607)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC-----------CCCEEEECSSCCCCCSSBHHHHHHHH----
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-----------eeEEEEEecCccCCCCCcHHHHHHhh----
Confidence 357899999999999999999999999999999999976 2468999997632 22332221110
Q ss_pred CCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh-C
Q 029421 79 YRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE-S 136 (193)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~-~ 136 (193)
............++++.+++.... |+.+|++|||||| ++||+.++..+.++++.+. +
T Consensus 442 -~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~ 520 (607)
T 3bk7_A 442 -DSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEK 520 (607)
T ss_dssp -HHHHHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHH
T ss_pred -hccCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHh
Confidence 000000112234566666665331 8899999999999 6999999999999999875 3
Q ss_pred -CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 137 -NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 137 -g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
|.|||++ |||++++..+||++
T Consensus 521 ~g~tvi~v------sHd~~~~~~~adrv 542 (607)
T 3bk7_A 521 NEKTALVV------EHDVLMIDYVSDRL 542 (607)
T ss_dssp TTCEEEEE------CSCHHHHHHHCSEE
T ss_pred CCCEEEEE------eCCHHHHHHhCCEE
Confidence 9999999 99999999999984
No 48
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.93 E-value=6.7e-27 Score=203.80 Aligned_cols=146 Identities=15% Similarity=0.153 Sum_probs=106.5
Q ss_pred cccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCe---------EEeceEchhh----ccCCceeeEEEeecCCcc---
Q 029421 2 AAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSL---------KVQGFYTGEI----RQGGQRVGFEVVTLDDRR--- 65 (193)
Q Consensus 2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i---------~~~g~~~~~~----~~~~~~ig~~~q~~~~~~--- 65 (193)
+|++||+++|+||||||||||+|+|+|+++|++|++ .++|...... ......+++++|......
T Consensus 43 ~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~ 122 (538)
T 1yqt_A 43 VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAV 122 (538)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECSCGGGSGGGC
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhhhhhhcchhh
Confidence 378999999999999999999999999999999996 3556543211 112345778887542111
Q ss_pred --cccccccCCCCCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCcccc
Q 029421 66 --APLASINASSPESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELF 122 (193)
Q Consensus 66 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~ 122 (193)
+..++.. .........+.++.+++.... ++.+|++|||||| ++||+.
T Consensus 123 ~~~v~e~~~----------~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~ 192 (538)
T 1yqt_A 123 KGKVIELLK----------KADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIR 192 (538)
T ss_dssp CSBHHHHHH----------HHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHH
T ss_pred hccHHHHHh----------hhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHH
Confidence 1111100 001112344566666664321 7899999999999 699999
Q ss_pred ccchHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 123 SSSFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 123 ~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
++..+.++++.+++ |.|||++ |||++++..+||++
T Consensus 193 ~~~~l~~~L~~l~~~g~tvi~v------sHd~~~~~~~~dri 228 (538)
T 1yqt_A 193 QRLNAARAIRRLSEEGKSVLVV------EHDLAVLDYLSDII 228 (538)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEE------CSCHHHHHHHCSEE
T ss_pred HHHHHHHHHHHHHhcCCEEEEE------eCCHHHHHHhCCEE
Confidence 99999999998866 9999999 99999999999984
No 49
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.93 E-value=9.8e-27 Score=205.04 Aligned_cols=146 Identities=16% Similarity=0.153 Sum_probs=106.8
Q ss_pred cccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCe---------EEeceEchhh----ccCCceeeEEEeecCCcc---
Q 029421 2 AAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSL---------KVQGFYTGEI----RQGGQRVGFEVVTLDDRR--- 65 (193)
Q Consensus 2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i---------~~~g~~~~~~----~~~~~~ig~~~q~~~~~~--- 65 (193)
++++||+++|+||||||||||+|+|+|+++|++|++ .++|..+... ......+++++|......
T Consensus 113 ~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 192 (607)
T 3bk7_A 113 IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAV 192 (607)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTC
T ss_pred CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhhhhcceEEeechhhhchhhc
Confidence 378999999999999999999999999999999996 4556544211 112345778877542110
Q ss_pred --cccccccCCCCCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCcccc
Q 029421 66 --APLASINASSPESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELF 122 (193)
Q Consensus 66 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~ 122 (193)
++.+++.. ........+.++.+++.... |+.+|++|||||| ++||+.
T Consensus 193 ~~tv~e~l~~----------~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~ 262 (607)
T 3bk7_A 193 KGKVRELLKK----------VDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIR 262 (607)
T ss_dssp CSBHHHHHHH----------TCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHH
T ss_pred cccHHHHhhh----------hHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHH
Confidence 11111110 01112344566666665332 8899999999999 699999
Q ss_pred ccchHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 123 SSSFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 123 ~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
++..+.++++.+.+ |.|||++ |||++.+..+||++
T Consensus 263 ~~~~l~~~L~~l~~~g~tvIiv------sHdl~~~~~~adri 298 (607)
T 3bk7_A 263 QRLKVARVIRRLANEGKAVLVV------EHDLAVLDYLSDVI 298 (607)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEE------CSCHHHHHHHCSEE
T ss_pred HHHHHHHHHHHHHhcCCEEEEE------ecChHHHHhhCCEE
Confidence 99999999998866 9999999 99999999999984
No 50
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.4e-25 Score=197.64 Aligned_cols=139 Identities=14% Similarity=0.187 Sum_probs=101.1
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecCCc--ccccccccCCCCCCCC
Q 029421 3 AGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDR--RAPLASINASSPESYR 80 (193)
Q Consensus 3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~~--~~~~~~~~~~~~~~~~ 80 (193)
+.+||+++|+||||||||||+|+|+|+++|++|+.. ....++|++|+.... .++.++....... .
T Consensus 375 ~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~-----------~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~--~ 441 (608)
T 3j16_B 375 FSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDI-----------PKLNVSMKPQKIAPKFPGTVRQLFFKKIRG--Q 441 (608)
T ss_dssp CCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCC-----------CSCCEEEECSSCCCCCCSBHHHHHHHHCSS--T
T ss_pred cccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCc-----------cCCcEEEecccccccCCccHHHHHHHHhhc--c
Confidence 345599999999999999999999999999999731 134689999875321 2222221110000 0
Q ss_pred CCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh-C-C
Q 029421 81 WPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE-S-N 137 (193)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~-~-g 137 (193)
. .......++++.+++.++. |+.+|++|||||| +|||+.++..+.++++.+. + |
T Consensus 442 ~---~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g 518 (608)
T 3j16_B 442 F---LNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNK 518 (608)
T ss_dssp T---TSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred c---ccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 0 0112233556666654332 8899999999999 6999999999999999874 4 9
Q ss_pred CcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 138 IPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 138 ~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.|||++ |||++++..+||++
T Consensus 519 ~tviiv------tHdl~~~~~~aDrv 538 (608)
T 3j16_B 519 KTAFIV------EHDFIMATYLADKV 538 (608)
T ss_dssp CEEEEE------CSCHHHHHHHCSEE
T ss_pred CEEEEE------eCCHHHHHHhCCEE
Confidence 999999 99999999999994
No 51
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.92 E-value=2.6e-25 Score=168.24 Aligned_cols=164 Identities=32% Similarity=0.529 Sum_probs=106.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc--cCCceeeEEEeecCCcccccccccCCCCCCCCCCccc
Q 029421 8 CFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR--QGGQRVGFEVVTLDDRRAPLASINASSPESYRWPTVG 85 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~--~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (193)
+++|+||||||||||+++|+|++. |.++|+...... ..++++||++|+.......+..... . ......
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~--~---~~~~~~ 71 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFF--T---SKKLVG 71 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTC--C---CSSEET
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecCcHHHHHHHhhcC--C---cccccc
Confidence 689999999999999999999985 677887653322 3456799999976211111111000 0 000001
Q ss_pred ceeeehhhhh--hhcccccc----cCCCCCEEEEec--C-CCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChhHH
Q 029421 86 RYKVDVASFE--AIALPELQ----VGADTDLFVIDE--V-GKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAV 156 (193)
Q Consensus 86 ~~~~~~~~l~--~~~l~~~~----l~~~p~llllDE--p-~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~ 156 (193)
..-.....-+ ++.+...+ ++.+|++++||| | +++|+..+..+.++++. .+.|+|+++|. +||.+.+
T Consensus 72 ~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~--~~~~~i~~~H~---~h~~~~~ 146 (178)
T 1ye8_A 72 SYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD--PNVNVVATIPI---RDVHPLV 146 (178)
T ss_dssp TEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC--TTSEEEEECCS---SCCSHHH
T ss_pred ccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc--CCCeEEEEEcc---CCCchHH
Confidence 1111111111 22222211 468999999999 9 69998876655555543 26779999775 7899999
Q ss_pred HHHhcCCCcEEEEeCCCChhHHHHHHHHHH
Q 029421 157 ARLRNHPGATIFTLSPGNRDSLKDNIYYQL 186 (193)
Q Consensus 157 ~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~ 186 (193)
..+|++.++.++.+...+++++.+++.+.+
T Consensus 147 ~~i~~r~~~~i~~~~~~~r~~~~~~l~~~~ 176 (178)
T 1ye8_A 147 KEIRRLPGAVLIELTPENRDVILEDILSLL 176 (178)
T ss_dssp HHHHTCTTCEEEECCTTTTTTHHHHHHHHS
T ss_pred HHHHhcCCcEEEEecCcCHHHHHHHHHHHH
Confidence 999999999999999889988888886554
No 52
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.92 E-value=2.4e-26 Score=216.92 Aligned_cols=170 Identities=10% Similarity=0.100 Sum_probs=118.6
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecC-CcccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLD-DRRAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~-~~~~~~~~~~~~~~~ 77 (193)
|+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... ...+++++|+||++. ...+..+|+.+....
T Consensus 1054 l~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~ 1133 (1284)
T 3g5u_A 1054 LEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNS 1133 (1284)
T ss_dssp EEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCC
Confidence 57899999999999999999999999999999999999999987432 334678999999883 234556666543221
Q ss_pred CCCCCcccce-----eeehhhhhhh--ccc--------ccc------------cCCCCCEEEEecC-CCccccccchHHH
Q 029421 78 SYRWPTVGRY-----KVDVASFEAI--ALP--------ELQ------------VGADTDLFVIDEV-GKMELFSSSFFPA 129 (193)
Q Consensus 78 ~~~~~~~~~~-----~~~~~~l~~~--~l~--------~~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ 129 (193)
.. ....... ....+..+.+ ++. .++ ++.+|++|||||| ++||+.++..+.+
T Consensus 1134 ~~-~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~ 1212 (1284)
T 3g5u_A 1134 RV-VSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQE 1212 (1284)
T ss_dssp CC-CCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHH
T ss_pred CC-CCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 00 0000000 0001111111 110 122 7789999999999 5999999999999
Q ss_pred HHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHHH
Q 029421 130 VLRILESNIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLKD 180 (193)
Q Consensus 130 ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~~ 180 (193)
.++.+.+|+|+|++ |||++.+. .||++ +|.++ ..++.+++.+
T Consensus 1213 ~l~~~~~~~tvi~i------sH~l~~i~-~~dri~vl~~G~i~--~~g~~~~l~~ 1258 (1284)
T 3g5u_A 1213 ALDKAREGRTCIVI------AHRLSTIQ-NADLIVVIQNGKVK--EHGTHQQLLA 1258 (1284)
T ss_dssp HHHHHSSSSCEEEE------CSCTTGGG-SCSEEEEEETBEEE--EEECHHHHHH
T ss_pred HHHHhCCCCEEEEE------ecCHHHHH-cCCEEEEEECCEEE--EECCHHHHHh
Confidence 99887669999999 99999875 48884 34443 3345555554
No 53
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.92 E-value=6.1e-26 Score=197.61 Aligned_cols=150 Identities=13% Similarity=0.144 Sum_probs=99.7
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCe-----------EEeceEchhh----ccCCceeeEEEeecCCcccc
Q 029421 3 AGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSL-----------KVQGFYTGEI----RQGGQRVGFEVVTLDDRRAP 67 (193)
Q Consensus 3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i-----------~~~g~~~~~~----~~~~~~ig~~~q~~~~~~~~ 67 (193)
+++|++++|+||||||||||+|+|+|+++|++|+| .+.|.++... ......+...+|... ....
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~ 100 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVE-YASK 100 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTT-GGGT
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhh-hhhh
Confidence 46899999999999999999999999999999998 4556544211 011112222222211 0000
Q ss_pred cccccCCCCCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccch
Q 029421 68 LASINASSPESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSF 126 (193)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~ 126 (193)
+..... .... ..........++++.+++.... ++.+|++|||||| ++||+..+..
T Consensus 101 ~~~~~v--~~~l--~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~ 176 (538)
T 3ozx_A 101 FLKGTV--NEIL--TKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMN 176 (538)
T ss_dssp TCCSBH--HHHH--HHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHH
T ss_pred hccCcH--HHHh--hcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHH
Confidence 000000 0000 0001112234455555554321 7899999999999 6999999999
Q ss_pred HHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 127 FPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 127 ~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
+.++++.+++|+|||++ |||++++..+||++
T Consensus 177 l~~~l~~l~~g~tii~v------sHdl~~~~~~~d~i 207 (538)
T 3ozx_A 177 MAKAIRELLKNKYVIVV------DHDLIVLDYLTDLI 207 (538)
T ss_dssp HHHHHHHHCTTSEEEEE------CSCHHHHHHHCSEE
T ss_pred HHHHHHHHhCCCEEEEE------EeChHHHHhhCCEE
Confidence 99999988779999999 99999999999984
No 54
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.92 E-value=3.5e-26 Score=201.36 Aligned_cols=155 Identities=12% Similarity=0.166 Sum_probs=99.3
Q ss_pred cccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeE-----------EeceEchhh--ccCCceee--EEEeecCCccc
Q 029421 2 AAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLK-----------VQGFYTGEI--RQGGQRVG--FEVVTLDDRRA 66 (193)
Q Consensus 2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~-----------~~g~~~~~~--~~~~~~ig--~~~q~~~~~~~ 66 (193)
++++|++++|+||||||||||+|+|+|+++|++|+|. +.|...... ......+. +.+|.......
T Consensus 99 ~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (608)
T 3j16_B 99 TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPR 178 (608)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECCCTTTHHH
T ss_pred CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhchhhhhhhhh
Confidence 4678999999999999999999999999999999983 233222100 00001111 22221110000
Q ss_pred cc-ccccCCCCCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCcccccc
Q 029421 67 PL-ASINASSPESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSS 124 (193)
Q Consensus 67 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~ 124 (193)
.. ..... .................+.++.+++.... ++.+|++|||||| ++||+..+
T Consensus 179 ~~~~~~~~-v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~ 257 (608)
T 3j16_B 179 AIKGPVQK-VGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQR 257 (608)
T ss_dssp HCSSSSSH-HHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHH
T ss_pred hhcchhhH-HHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHH
Confidence 00 00000 00000000001112344566666665432 7899999999999 69999999
Q ss_pred chHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 125 SFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 125 ~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
..+.++++.+++ |.|||++ |||++++..+||++
T Consensus 258 ~~l~~~l~~l~~~g~tvi~v------tHdl~~~~~~~drv 291 (608)
T 3j16_B 258 LNAAQIIRSLLAPTKYVICV------EHDLSVLDYLSDFV 291 (608)
T ss_dssp HHHHHHHHGGGTTTCEEEEE------CSCHHHHHHHCSEE
T ss_pred HHHHHHHHHHHhCCCEEEEE------eCCHHHHHHhCCEE
Confidence 999999999877 9999999 99999999999984
No 55
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.91 E-value=5.9e-26 Score=214.77 Aligned_cols=167 Identities=13% Similarity=0.164 Sum_probs=121.7
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCCc-ccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDDR-RAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~~-~~~~~~~~~~~~~ 77 (193)
|+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++... ...|++++|+||++..+ .+..+|+.+....
T Consensus 1100 l~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~ 1179 (1321)
T 4f4c_A 1100 FSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDP 1179 (1321)
T ss_dssp EEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCT
T ss_pred EEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCC
Confidence 57999999999999999999999999999999999999999998543 34567899999998432 3556676543211
Q ss_pred CCCCCcccceeeehhhhhhhcccc-------------------cc------------cCCCCCEEEEecC-CCccccccc
Q 029421 78 SYRWPTVGRYKVDVASFEAIALPE-------------------LQ------------VGADTDLFVIDEV-GKMELFSSS 125 (193)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~l~~-------------------~~------------l~~~p~llllDEp-~~LD~~~~~ 125 (193)
. .. ..+...++++..++.+ ++ ++.+|++|||||| ++||+.+..
T Consensus 1180 ~----~~-sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~ 1254 (1321)
T 4f4c_A 1180 S----SV-TMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEK 1254 (1321)
T ss_dssp T----TS-CHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHH
T ss_pred C----CC-CHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHH
Confidence 0 00 0111122222222210 11 7899999999999 699999998
Q ss_pred hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHHHH
Q 029421 126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLKDN 181 (193)
Q Consensus 126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~~~ 181 (193)
.+++.++.+.+|+|+|++ +|.+..+. .||++ +|.+ ++.+++++|.++
T Consensus 1255 ~Iq~~l~~~~~~~TvI~I------AHRLsTi~-~aD~I~Vld~G~I--vE~Gth~eLl~~ 1305 (1321)
T 4f4c_A 1255 VVQEALDRAREGRTCIVI------AHRLNTVM-NADCIAVVSNGTI--IEKGTHTQLMSE 1305 (1321)
T ss_dssp HHHHHHTTTSSSSEEEEE------CSSSSTTT-TCSEEEEESSSSE--EEEECHHHHHHC
T ss_pred HHHHHHHHHcCCCEEEEe------ccCHHHHH-hCCEEEEEECCEE--EEECCHHHHHhC
Confidence 888888887779999999 99988775 47883 3443 334567777654
No 56
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.90 E-value=1.3e-25 Score=211.97 Aligned_cols=154 Identities=12% Similarity=0.147 Sum_probs=110.8
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCC-cccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDD-RRAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~ 77 (193)
|+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ...++.+||++|++.. ..+..+|+.+....
T Consensus 411 l~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~ 490 (1284)
T 3g5u_A 411 LKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGRED 490 (1284)
T ss_dssp EEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCC
Confidence 57899999999999999999999999999999999999999997532 2345679999998832 23566665543221
Q ss_pred CCCCCcccc---eeeehhhhhhh--ccc--------ccc------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421 78 SYRWPTVGR---YKVDVASFEAI--ALP--------ELQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVL 131 (193)
Q Consensus 78 ~~~~~~~~~---~~~~~~~l~~~--~l~--------~~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll 131 (193)
.. ...... .....+.++.+ ++. .++ ++.+|++|||||| ++||+.+...+.+.+
T Consensus 491 ~~-~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l 569 (1284)
T 3g5u_A 491 VT-MDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAAL 569 (1284)
T ss_dssp CC-HHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHH
T ss_pred CC-HHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 00 000000 00011111111 111 111 7789999999999 699999988888888
Q ss_pred HHHhCCCcEEEEecCCCCCCChhHHHHHhcC
Q 029421 132 RILESNIPVLASIPAPKSGRDIPAVARLRNH 162 (193)
Q Consensus 132 ~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~ 162 (193)
+.+.+|+|+|++ ||++..+.. ||+
T Consensus 570 ~~~~~~~t~i~i------tH~l~~i~~-~d~ 593 (1284)
T 3g5u_A 570 DKAREGRTTIVI------AHRLSTVRN-ADV 593 (1284)
T ss_dssp HHHHTTSEEEEE------CSCHHHHTT-CSE
T ss_pred HHHcCCCEEEEE------ecCHHHHHc-CCE
Confidence 887779999999 999998865 887
No 57
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.90 E-value=8.2e-26 Score=174.93 Aligned_cols=136 Identities=18% Similarity=0.190 Sum_probs=80.7
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEch-hhccCCceeeEEEeecCCcccccccccCCCCCCCCC
Q 029421 3 AGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTG-EIRQGGQRVGFEVVTLDDRRAPLASINASSPESYRW 81 (193)
Q Consensus 3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~-~~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
|++|++++|+||||||||||+++|+|+ +|++|+|.. .+.. .....++.+||+||++......+...... .....
T Consensus 19 i~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~--~~~~~~~~~~~~~ig~v~q~~~enl~~~~~~~~~--~~~~~ 93 (208)
T 3b85_A 19 IDTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSR--IILTRPAVEAGEKLGFLPGTLNEKIDPYLRPLHD--ALRDM 93 (208)
T ss_dssp HHHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSE--EEEEECSCCTTCCCCSSCC------CTTTHHHHH--HHTTT
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeee--EEecCCchhhhcceEEecCCHHHHHHHHHHHHHH--HHHHh
Confidence 568999999999999999999999999 999999953 2221 11233567999999751111000000000 00000
Q ss_pred Ccccceeeehhhhhhhcccc-------cccCCCCCEEEEecC-CCccccccchHHHHHHHHhCCCcEEEEecCCCCCCCh
Q 029421 82 PTVGRYKVDVASFEAIALPE-------LQVGADTDLFVIDEV-GKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDI 153 (193)
Q Consensus 82 ~~~~~~~~~~~~l~~~~l~~-------~~l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~ 153 (193)
. ......+.++. ++.. ..++.+|++|||||| ++ ++..+.++++.+.+|+||| + |||+
T Consensus 94 ~---~~~~~~~~l~~-glGq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l~~g~tii-v------tHd~ 158 (208)
T 3b85_A 94 V---EPEVIPKLMEA-GIVEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRLGFGSKMV-V------TGDI 158 (208)
T ss_dssp S---CTTHHHHHHHT-TSEEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTBCTTCEEE-E------EEC-
T ss_pred c---cHHHHHHHHHh-CCchHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHhcCCCEEE-E------ECCH
Confidence 0 01112233333 3321 227899999999999 47 6777888888773389999 9 8988
Q ss_pred hHHHH
Q 029421 154 PAVAR 158 (193)
Q Consensus 154 ~~~~~ 158 (193)
+++..
T Consensus 159 ~~~~~ 163 (208)
T 3b85_A 159 TQVDL 163 (208)
T ss_dssp -----
T ss_pred HHHhC
Confidence 77654
No 58
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.90 E-value=1.3e-24 Score=205.62 Aligned_cols=163 Identities=13% Similarity=0.178 Sum_probs=119.4
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCC-cccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDD-RRAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~ 77 (193)
|+|++|+.++|+||||||||||+++|.|+++|++|+|.++|.++... ...++++||++|++.- ..+..+|+.+....
T Consensus 439 l~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~ 518 (1321)
T 4f4c_A 439 LRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEG 518 (1321)
T ss_dssp EEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTT
T ss_pred EeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhccc
Confidence 57899999999999999999999999999999999999999998543 3346789999999832 34667777654321
Q ss_pred CCCCCcccceeeehhhhhhhccc-------------------cc------------ccCCCCCEEEEecC-CCccccccc
Q 029421 78 SYRWPTVGRYKVDVASFEAIALP-------------------EL------------QVGADTDLFVIDEV-GKMELFSSS 125 (193)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~l~-------------------~~------------~l~~~p~llllDEp-~~LD~~~~~ 125 (193)
. . .+...++++..++. .+ ++..+|+++||||| ++||+.+..
T Consensus 519 ~------~-~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~ 591 (1321)
T 4f4c_A 519 I------T-REEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEG 591 (1321)
T ss_dssp C------C-HHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHH
T ss_pred c------h-HHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHH
Confidence 1 0 11111222211110 01 18899999999999 699999988
Q ss_pred hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHH
Q 029421 126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLK 179 (193)
Q Consensus 126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~ 179 (193)
.+.+.+..+.+|+|+|++ +|++..+. .||++ +|.++ ..++.++|.
T Consensus 592 ~i~~~l~~~~~~~T~iii------aHrls~i~-~aD~Iivl~~G~iv--e~Gth~eL~ 640 (1321)
T 4f4c_A 592 IVQQALDKAAKGRTTIII------AHRLSTIR-NADLIISCKNGQVV--EVGDHRALM 640 (1321)
T ss_dssp HHHHHHHHHHTTSEEEEE------CSCTTTTT-TCSEEEEEETTEEE--EEECHHHHH
T ss_pred HHHHHHHHHhCCCEEEEE------cccHHHHH-hCCEEEEeeCCeee--ccCCHHHHH
Confidence 889988888889999999 99988664 58873 34433 334555554
No 59
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.88 E-value=1.1e-23 Score=188.02 Aligned_cols=154 Identities=15% Similarity=0.123 Sum_probs=84.9
Q ss_pred CcccCCCEEEEEcCCCCcHHHHH---------------------HHHHhhcccCCC-------CeEEeceEchhhccCCc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLI---------------------MRVLESLKASNP-------SLKVQGFYTGEIRQGGQ 52 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl---------------------~~i~gl~~~~~G-------~i~~~g~~~~~~~~~~~ 52 (193)
|+|++|++++|+||||||||||+ +++.|+.+|+.| .|.++|...... .+.
T Consensus 39 l~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~~~~--~~~ 116 (670)
T 3ux8_A 39 VEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTTSRN--PRS 116 (670)
T ss_dssp EEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-------CC
T ss_pred EEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchhhcc--chh
Confidence 57899999999999999999998 899999999854 444444432111 122
Q ss_pred eeeEEEeecC---------------------CcccccccccCCCCCCCC-CCccccee------eehhhhhhhccccc--
Q 029421 53 RVGFEVVTLD---------------------DRRAPLASINASSPESYR-WPTVGRYK------VDVASFEAIALPEL-- 102 (193)
Q Consensus 53 ~ig~~~q~~~---------------------~~~~~~~~~~~~~~~~~~-~~~~~~~~------~~~~~l~~~~l~~~-- 102 (193)
.+|+++|... ..+++.+++.+....... ........ .....++.+++...
T Consensus 117 ~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~ 196 (670)
T 3ux8_A 117 TVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNVGLDYLTL 196 (670)
T ss_dssp BHHHHTTCC-------------------------CC--------------------------CHHHHHHHHHTTCTTCCT
T ss_pred ceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHcCCchhhh
Confidence 3444333210 112333332221000000 00000000 01122455555421
Q ss_pred -------c------------cCCCCC--EEEEecC-CCccccccchHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHH
Q 029421 103 -------Q------------VGADTD--LFVIDEV-GKMELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARL 159 (193)
Q Consensus 103 -------~------------l~~~p~--llllDEp-~~LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~ 159 (193)
+ |+.+|+ +|||||| ++||+..+..+.++++.+++ |.|||+| |||++.+. .
T Consensus 197 ~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~v------tHd~~~~~-~ 269 (670)
T 3ux8_A 197 SRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVV------EHDEDTML-A 269 (670)
T ss_dssp TCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEE------CCCHHHHH-H
T ss_pred cCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEE------eCCHHHHh-h
Confidence 1 778887 9999999 69999999999999999876 9999999 99998765 5
Q ss_pred hcCC
Q 029421 160 RNHP 163 (193)
Q Consensus 160 ~d~~ 163 (193)
||++
T Consensus 270 ~d~i 273 (670)
T 3ux8_A 270 ADYL 273 (670)
T ss_dssp CSEE
T ss_pred CCEE
Confidence 8883
No 60
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.88 E-value=1.3e-23 Score=179.74 Aligned_cols=142 Identities=11% Similarity=0.043 Sum_probs=95.3
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCC-C-eEEeceEchhhccCCceeeEEEeecC--C---cccccccccC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNP-S-LKVQGFYTGEIRQGGQRVGFEVVTLD--D---RRAPLASINA 73 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G-~-i~~~g~~~~~~~~~~~~ig~~~q~~~--~---~~~~~~~~~~ 73 (193)
|++++|++++|+||||||||||+|+|+|+++|++| + |.++|. .++.++|+||+.. . ..+..++. +
T Consensus 133 l~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~-------~~~~i~~vpq~~~l~~~~~~~tv~eni-~ 204 (460)
T 2npi_A 133 MSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD-------PQQPIFTVPGCISATPISDILDAQLPT-W 204 (460)
T ss_dssp HHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECC-------TTSCSSSCSSCCEEEECCSCCCTTCTT-C
T ss_pred eEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCC-------ccCCeeeeccchhhcccccccchhhhh-c
Confidence 46889999999999999999999999999999999 9 999982 2466888888651 1 12233332 2
Q ss_pred CCCCCCCCCcccceeeehhhhhhhccccc------------------c--cCCCCCE----EEEec-C-CCccccccchH
Q 029421 74 SSPESYRWPTVGRYKVDVASFEAIALPEL------------------Q--VGADTDL----FVIDE-V-GKMELFSSSFF 127 (193)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------------------~--l~~~p~l----lllDE-p-~~LD~~~~~~~ 127 (193)
....... . .......++++.+++... . ++.+|++ +|||| | ++||+. ...+
T Consensus 205 ~~~~~~~-~--~~~~~~~~ll~~~gl~~~~~~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l 280 (460)
T 2npi_A 205 GQSLTSG-A--TLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAEL 280 (460)
T ss_dssp SCBCBSS-C--CSSCCBCCEECCCCSSSGGGCHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHH
T ss_pred ccccccC-c--chHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHH
Confidence 1110000 0 001112223333333221 2 6789999 99999 8 699998 5455
Q ss_pred HHHHHHHhCCCcEEEEecCCCCCCChh------HHHHHhcC
Q 029421 128 PAVLRILESNIPVLASIPAPKSGRDIP------AVARLRNH 162 (193)
Q Consensus 128 ~~ll~~l~~g~tvl~~~~~~~~tHd~~------~~~~~~d~ 162 (193)
.++++.+ +.|+|++ +|+.+ ++.++||+
T Consensus 281 ~~l~~~~--~~tviiV------th~~~~~l~~~~~~~~~dr 313 (460)
T 2npi_A 281 HHIIEKL--NVNIMLV------LCSETDPLWEKVKKTFGPE 313 (460)
T ss_dssp HHHHHHT--TCCEEEE------ECCSSCTHHHHHHHHHHHH
T ss_pred HHHHHHh--CCCEEEE------EccCchhhhHHHHHHhccc
Confidence 5554443 7899999 77766 77889997
No 61
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.88 E-value=6.8e-24 Score=193.91 Aligned_cols=41 Identities=24% Similarity=0.349 Sum_probs=39.1
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEec
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQG 41 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g 41 (193)
|+|.+|++++|+||||||||||+|+|+|+++|++|+|+++|
T Consensus 694 l~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~ 734 (986)
T 2iw3_A 694 FQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHE 734 (986)
T ss_dssp EEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECT
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcC
Confidence 57899999999999999999999999999999999999975
No 62
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.88 E-value=3.2e-25 Score=171.01 Aligned_cols=152 Identities=10% Similarity=0.031 Sum_probs=92.2
Q ss_pred cccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh--hccCCceeeEEEeecC--CcccccccccCCC--
Q 029421 2 AAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE--IRQGGQRVGFEVVTLD--DRRAPLASINASS-- 75 (193)
Q Consensus 2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~--~~~~~~~ig~~~q~~~--~~~~~~~~~~~~~-- 75 (193)
+|++|++++|+||||||||||+|+|+|+++ .+.+++..... ....++.++|+||++. ...+..+++....
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~----~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l~~~~~~ 91 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERIP----NLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEI 91 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHST----TCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEE
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhCC----ceEEcccccccCCcccccCCCeeEecCHHHHHHHHhcCCceeehhh
Confidence 688999999999999999999999999986 35554432211 1122456899999752 1111111110000
Q ss_pred C---CCCCCCcccceeeehhh------hhhhccc--------cc-ccCCCCCEEEEecC-CCc----cccccchHHHHHH
Q 029421 76 P---ESYRWPTVGRYKVDVAS------FEAIALP--------EL-QVGADTDLFVIDEV-GKM----ELFSSSFFPAVLR 132 (193)
Q Consensus 76 ~---~~~~~~~~~~~~~~~~~------l~~~~l~--------~~-~l~~~p~llllDEp-~~L----D~~~~~~~~~ll~ 132 (193)
. ...............+. ++.+++. .+ .++.+|++++|||| +++ |+..+..+.++++
T Consensus 92 ~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~ 171 (207)
T 1znw_A 92 HGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVTVFLAPPSWQDLQARLIGRGTETADVIQRRLDTARI 171 (207)
T ss_dssp GGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEEEEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHH
T ss_pred cCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 0 00000000000011111 2222322 12 26789999999999 576 6667778888888
Q ss_pred HHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 133 ILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 133 ~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+. + |.|+|++ |||++++.++||++
T Consensus 172 ~l~~~~g~tvi~v------tHdl~~~~~~~d~i 198 (207)
T 1znw_A 172 ELAAQGDFDKVVV------NRRLESACAELVSL 198 (207)
T ss_dssp HHHGGGGSSEEEE------CSSHHHHHHHHHHH
T ss_pred HHhhhccCcEEEE------CCCHHHHHHHHHHH
Confidence 875 4 8999999 99999999999984
No 63
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.86 E-value=1.8e-22 Score=184.59 Aligned_cols=135 Identities=16% Similarity=0.246 Sum_probs=97.5
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeec---CCcccccccccCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTL---DDRRAPLASINASSPE 77 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~---~~~~~~~~~~~~~~~~ 77 (193)
|+|++|++++|+||||||||||+|+|+| |+| +|.+.. ...+++|++|++ ....++.+++...
T Consensus 456 l~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~----~~~~~~~v~q~~~~~~~~ltv~e~l~~~--- 520 (986)
T 2iw3_A 456 LRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQ----EECRTVYVEHDIDGTHSDTSVLDFVFES--- 520 (986)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCT----TTSCEEETTCCCCCCCTTSBHHHHHHTT---
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCccc----cceeEEEEcccccccccCCcHHHHHHHh---
Confidence 5789999999999999999999999996 554 443321 112367877753 2234444544321
Q ss_pred CCCCCcccceeeehhhhhhhccc-c--------cc------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh
Q 029421 78 SYRWPTVGRYKVDVASFEAIALP-E--------LQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE 135 (193)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~l~-~--------~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~ 135 (193)
... . .....+.++.+++. . ++ ++.+|++|||||| ++||+.++..+.++++.
T Consensus 521 ~~~---~--~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~-- 593 (986)
T 2iw3_A 521 GVG---T--KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT-- 593 (986)
T ss_dssp CSS---C--HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH--
T ss_pred hcC---H--HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh--
Confidence 000 0 22344566666663 1 22 7899999999999 69999999988888887
Q ss_pred CCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 136 SNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 136 ~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.|.|||++ |||++++..+||++
T Consensus 594 ~g~tvIiv------SHdl~~l~~~adri 615 (986)
T 2iw3_A 594 CGITSITI------SHDSVFLDNVCEYI 615 (986)
T ss_dssp SCSEEEEE------CSCHHHHHHHCSEE
T ss_pred CCCEEEEE------ECCHHHHHHhCCEE
Confidence 58999999 99999999999983
No 64
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.84 E-value=3.9e-23 Score=154.99 Aligned_cols=129 Identities=11% Similarity=0.048 Sum_probs=81.3
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHH------------HHHhhcccCCCCeEEeceEchhhc---cCCceeeEEEeecCCcc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIM------------RVLESLKASNPSLKVQGFYTGEIR---QGGQRVGFEVVTLDDRR 65 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~------------~i~gl~~~~~G~i~~~g~~~~~~~---~~~~~ig~~~q~~~~~~ 65 (193)
|++++|++++|+||||||||||+| .+.|++.++.|.+.+.+....... ......|+..+
T Consensus 4 l~i~~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~------ 77 (171)
T 4gp7_A 4 LTIPELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLMSDDENDQTVTGAAFDVLHYIVSKRLQLGKLTV------ 77 (171)
T ss_dssp EEEESSEEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHHHHCSSTTCGGGHHHHHHHHHHHHHHHHHTTCCEE------
T ss_pred ccCCCCEEEEEECCCCCCHHHHHHHHccCCeEEccHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHhCCCeEE------
Confidence 578999999999999999999999 777777777776666553211100 00011111111
Q ss_pred cccccccCCCCCCCCCCcccceeeehhhhhhhcccccccCCCCCEEEEecC-CCccccc----------------cchHH
Q 029421 66 APLASINASSPESYRWPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEV-GKMELFS----------------SSFFP 128 (193)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp-~~LD~~~----------------~~~~~ 128 (193)
.++. ....... -+++.+. ..++.+|++++|||| ++||+.. +..+.
T Consensus 78 --~~~~--------~~~s~g~-------~qrv~iA-ral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~ 139 (171)
T 4gp7_A 78 --VDAT--------NVQESAR-------KPLIEMA-KDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMK 139 (171)
T ss_dssp --EESC--------CCSHHHH-------HHHHHHH-HHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHH
T ss_pred --EECC--------CCCHHHH-------HHHHHHH-HHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhh
Confidence 0000 0000000 1111211 126789999999999 6999984 35667
Q ss_pred HHHHHHhC-CCcEEEEecCCCCCCChhHHHHH
Q 029421 129 AVLRILES-NIPVLASIPAPKSGRDIPAVARL 159 (193)
Q Consensus 129 ~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~ 159 (193)
++++.+++ |.|+|++ |||++++.++
T Consensus 140 ~~l~~l~~~g~tvi~v------tH~~~~~~~~ 165 (171)
T 4gp7_A 140 KSIKGLQREGFRYVYI------LNSPEEVEEV 165 (171)
T ss_dssp HHSTTHHHHTCSEEEE------ECSHHHHHHE
T ss_pred hhhhhHHhcCCcEEEE------eCCHHHhhhh
Confidence 77766655 9999999 9999988764
No 65
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.84 E-value=1.8e-22 Score=158.63 Aligned_cols=154 Identities=13% Similarity=0.096 Sum_probs=88.2
Q ss_pred cccCCCEEEEEcCCCCcHHHHHHHHH--hhcccCCCCeEEeceEch-hhccCCceeeEEEeec--CCcccccccccCCCC
Q 029421 2 AAGAGKCFLVTGPPGVGKTTLIMRVL--ESLKASNPSLKVQGFYTG-EIRQGGQRVGFEVVTL--DDRRAPLASINASSP 76 (193)
Q Consensus 2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~--gl~~~~~G~i~~~g~~~~-~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~ 76 (193)
.|++|++++|+||||||||||+++|+ |++++..|.+.+++.... ......+.+||.+|+. .+.....+.......
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 105 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVG 105 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC-------
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEccccccc
Confidence 37899999999999999999999999 665777777878776542 2222234567766653 111222221111000
Q ss_pred CCCCC-CcccceeeehhhhhhhcccccccCCCCCEEEEecC-CCcc-----ccccchHHHHHHHHhC-CCcEEEEecCCC
Q 029421 77 ESYRW-PTVGRYKVDVASFEAIALPELQVGADTDLFVIDEV-GKME-----LFSSSFFPAVLRILES-NIPVLASIPAPK 148 (193)
Q Consensus 77 ~~~~~-~~~~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp-~~LD-----~~~~~~~~~ll~~l~~-g~tvl~~~~~~~ 148 (193)
..... ..........+..+.+. ..+ -..+|+++++||| +++| +..+..+.++++.+++ |+|||++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~-~~l-~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~v----- 178 (251)
T 2ehv_A 106 LPSEEKFVLEDRFNVDNFLRYIY-RVV-KAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILT----- 178 (251)
T ss_dssp ------------CCHHHHHHHHH-HHH-HHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEE-----
T ss_pred cccccceeccCcccHHHHHHHHH-HHH-HhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEE-----
Confidence 00000 00000000001111100 000 1368999999999 5876 4555668889988877 9999999
Q ss_pred CCCChhHH---------HHHh-cCC
Q 029421 149 SGRDIPAV---------ARLR-NHP 163 (193)
Q Consensus 149 ~tHd~~~~---------~~~~-d~~ 163 (193)
||+..++ ..+| |++
T Consensus 179 -tH~~~~~~~~~~~~~i~~~~aD~v 202 (251)
T 2ehv_A 179 -TEAPDPQHGKLSRYGIEEFIARGV 202 (251)
T ss_dssp -ECCC----CCSSSSSCGGGGCSEE
T ss_pred -ECCCCCCcccccccChhhEeeeEE
Confidence 9998887 5777 873
No 66
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.82 E-value=9e-22 Score=166.09 Aligned_cols=132 Identities=14% Similarity=0.048 Sum_probs=87.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecC-CcccccccccCCCCCCCCCCcccc
Q 029421 8 CFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD-DRRAPLASINASSPESYRWPTVGR 86 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 86 (193)
+++|+||||||||||+|+|+|+++|++|+|.++|.+.. + .++++|++. +..+..++..+....
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t-----~--~~~v~q~~~~~~ltv~D~~g~~~~~--------- 134 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-----M--ERHPYKHPNIPNVVFWDLPGIGSTN--------- 134 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC---------C--CCEEEECSSCTTEEEEECCCGGGSS---------
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-----e--eEEeccccccCCeeehHhhcccchH---------
Confidence 99999999999999999999999999999999886542 1 267888642 233333332221100
Q ss_pred eeeehhhhhhhccc------------------------------ccccCCCCCEEEEecC-CCccccccchHHHHHHHHh
Q 029421 87 YKVDVASFEAIALP------------------------------ELQVGADTDLFVIDEV-GKMELFSSSFFPAVLRILE 135 (193)
Q Consensus 87 ~~~~~~~l~~~~l~------------------------------~~~l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~ 135 (193)
....+.++.+++. -+....+|+++++||| ++||+..+..+.++++.+.
T Consensus 135 -~~~~~~L~~~~L~~~~~~~~lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~ 213 (413)
T 1tq4_A 135 -FPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNC 213 (413)
T ss_dssp -CCHHHHHHHTTGGGCSEEEEEESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHcCCCccCCeEEeCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHH
Confidence 0111122221111 1113349999999999 6999999988888887762
Q ss_pred -----C-C----CcEEEEecCCCCCCChhH--HHHHhcC
Q 029421 136 -----S-N----IPVLASIPAPKSGRDIPA--VARLRNH 162 (193)
Q Consensus 136 -----~-g----~tvl~~~~~~~~tHd~~~--~~~~~d~ 162 (193)
+ | .+|+++ +|++.. +.++||+
T Consensus 214 ~~~l~~~g~~~~~iiliS------sh~l~~~~~e~L~d~ 246 (413)
T 1tq4_A 214 VNTFRENGIAEPPIFLLS------NKNVCHYDFPVLMDK 246 (413)
T ss_dssp HHHHHHTTCSSCCEEECC------TTCTTSTTHHHHHHH
T ss_pred HHHHHhcCCCCCcEEEEe------cCcCCccCHHHHHHH
Confidence 2 3 457778 888876 8888887
No 67
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.80 E-value=1.4e-20 Score=153.15 Aligned_cols=161 Identities=16% Similarity=0.159 Sum_probs=93.8
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh------cc--CCceeeEEEeecC-Cc--ccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI------RQ--GGQRVGFEVVTLD-DR--RAPLA 69 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~------~~--~~~~ig~~~q~~~-~~--~~~~~ 69 (193)
|++++|++++|+||||||||||+++|+|+++|++|+|.+.|.+.... .. .+..++|++|++. .. .+..+
T Consensus 95 ~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e 174 (302)
T 3b9q_A 95 LGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSK 174 (302)
T ss_dssp CCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHH
T ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHH
Confidence 45789999999999999999999999999999999999999886322 11 1346899998643 11 12223
Q ss_pred cccCCCCCCCC---CCcccceeeehhh---hh--hhcccccccCCCCC--EEEEecC-CCccccccchHHHHHHHHh-C-
Q 029421 70 SINASSPESYR---WPTVGRYKVDVAS---FE--AIALPELQVGADTD--LFVIDEV-GKMELFSSSFFPAVLRILE-S- 136 (193)
Q Consensus 70 ~~~~~~~~~~~---~~~~~~~~~~~~~---l~--~~~l~~~~l~~~p~--llllDEp-~~LD~~~~~~~~~ll~~l~-~- 136 (193)
++.+....... ....+........ +. ++.+ ...++.+|+ +|++| | +|+|+..+ ++.+. .
T Consensus 175 ~l~~~~~~~~d~~lldt~gl~~~~~~~~~eLSkqr~~i-aral~~~P~e~lLvLD-ptsglD~~~~------~~~~~~~~ 246 (302)
T 3b9q_A 175 AVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAV-GKIVSGAPNEILLVLD-GNTGLNMLPQ------AREFNEVV 246 (302)
T ss_dssp HHHHHHHTTCSEEEECCCCCSSCCHHHHHHHHHHHHHH-HTTSTTCCSEEEEEEE-GGGGGGGHHH------HHHHHHHT
T ss_pred HHHHHHHcCCcchHHhcCCCCcchhHHHHHHHHHHHHH-HHhhccCCCeeEEEEe-CCCCcCHHHH------HHHHHHhc
Confidence 32211000000 0000000000111 11 1111 112678999 99999 9 69998743 23343 3
Q ss_pred CCcEEEEecCCCCCCChhHHHHHhcCCCcEEEEe
Q 029421 137 NIPVLASIPAPKSGRDIPAVARLRNHPGATIFTL 170 (193)
Q Consensus 137 g~tvl~~~~~~~~tHd~~~~~~~~d~~~~~~~~~ 170 (193)
|.|+|+++| .+.++....+..++++.+..+.++
T Consensus 247 g~t~iiiTh-lD~~~~~g~~l~~~~~~~~pi~~i 279 (302)
T 3b9q_A 247 GITGLILTK-LDGSARGGCVVSVVEELGIPVKFI 279 (302)
T ss_dssp CCCEEEEEC-CSSCSCTHHHHHHHHHHCCCEEEE
T ss_pred CCCEEEEeC-CCCCCccChheehHHHHCCCEEEE
Confidence 899999955 233444445555665544344444
No 68
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.80 E-value=3.5e-21 Score=171.75 Aligned_cols=53 Identities=15% Similarity=0.209 Sum_probs=45.9
Q ss_pred cCCCC---CEEEEecC-CCccccccchHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 104 VGADT---DLFVIDEV-GKMELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 104 l~~~p---~llllDEp-~~LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
|+.+| ++|||||| ++||+..+..+.++++.+++ |.|||+| |||++.+ ..||++
T Consensus 558 L~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~v------tHd~~~~-~~~d~i 615 (670)
T 3ux8_A 558 LHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVI------EHNLDVI-KTADYI 615 (670)
T ss_dssp HHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEE------CCCHHHH-TTCSEE
T ss_pred HhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE------eCCHHHH-HhCCEE
Confidence 55555 69999999 69999999999999998876 9999999 9999876 569984
No 69
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.80 E-value=3.1e-21 Score=167.74 Aligned_cols=143 Identities=17% Similarity=0.198 Sum_probs=98.5
Q ss_pred cccCCCEEEEEcCCCCcHHHHHHH--HHhhcccCCCCeEEeceEch-hhccCCceeeEEEeecCCcccccccccCCCCCC
Q 029421 2 AAGAGKCFLVTGPPGVGKTTLIMR--VLESLKASNPSLKVQGFYTG-EIRQGGQRVGFEVVTLDDRRAPLASINASSPES 78 (193)
Q Consensus 2 ~i~~Ge~~~l~GpnGsGKSTLl~~--i~gl~~~~~G~i~~~g~~~~-~~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~ 78 (193)
.|++|++++|+||||||||||+++ ++|+++|++|.|+++|.+.. ......+.+||++|++........ .... .
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~l~~-~~~~--~- 110 (525)
T 1tf7_A 35 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFI-LDAS--P- 110 (525)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSEEE-EECC--C-
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCcEEE-EecC--c-
Confidence 688999999999999999999999 78999999999999998752 222334568999987531111110 0000 0
Q ss_pred CCCCcccceeeehhhhhhhcccccc------c-CCCCCEEEEecCC------CccccccchHHHHHHHHhC-CCcEEEEe
Q 029421 79 YRWPTVGRYKVDVASFEAIALPELQ------V-GADTDLFVIDEVG------KMELFSSSFFPAVLRILES-NIPVLASI 144 (193)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~l~~~~------l-~~~p~llllDEp~------~LD~~~~~~~~~ll~~l~~-g~tvl~~~ 144 (193)
.. ...+.++.+++..+. + ..+|+++++|||+ ++|+..+..+.++++.+++ |+|||++
T Consensus 111 ---~~-----~~~~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~i- 181 (525)
T 1tf7_A 111 ---DP-----EGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMT- 181 (525)
T ss_dssp ---CS-----SCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEE-
T ss_pred ---cc-----chhhhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEE-
Confidence 00 011122223322211 2 2589999999994 2577888889999999877 9999999
Q ss_pred cCCCCCCChhH---------HHHHhcC
Q 029421 145 PAPKSGRDIPA---------VARLRNH 162 (193)
Q Consensus 145 ~~~~~tHd~~~---------~~~~~d~ 162 (193)
||++++ +..+||+
T Consensus 182 -----tH~~~~~~~~~~~~i~~~laD~ 203 (525)
T 1tf7_A 182 -----TERIEEYGPIARYGVEEFVSDN 203 (525)
T ss_dssp -----EECSSSSSCSSTTSCHHHHCSE
T ss_pred -----ecCCCCccccccccceeeeeeE
Confidence 888877 3556887
No 70
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.78 E-value=8.7e-20 Score=150.19 Aligned_cols=118 Identities=14% Similarity=0.081 Sum_probs=81.7
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecCCcccccccccCCCCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPLASINASSPESYR 80 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~ 80 (193)
|++++|++++|+||||||||||+++|+|+++|++|.|.++|.+.......+..++++++ .
T Consensus 166 ~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~g-------------------g- 225 (330)
T 2pt7_A 166 DGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFG-------------------G- 225 (330)
T ss_dssp HHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECB-------------------T-
T ss_pred hhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeC-------------------C-
Confidence 35778999999999999999999999999999999999998642111112333444321 0
Q ss_pred CCcccceeeehhhhhhhcccccccCCCCCEEEEecCCCccccccchHHHHHHHHhCC-CcEEEEecCCCCCCChhHHHHH
Q 029421 81 WPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEVGKMELFSSSFFPAVLRILESN-IPVLASIPAPKSGRDIPAVARL 159 (193)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp~~LD~~~~~~~~~ll~~l~~g-~tvl~~~~~~~~tHd~~~~~~~ 159 (193)
+. .....+. ..+..+|+++++|||++ ....++++.+..| .|+|++ +|+.. +...
T Consensus 226 ----g~--~~r~~la------~aL~~~p~ilildE~~~------~e~~~~l~~~~~g~~tvi~t------~H~~~-~~~~ 280 (330)
T 2pt7_A 226 ----NI--TSADCLK------SCLRMRPDRIILGELRS------SEAYDFYNVLCSGHKGTLTT------LHAGS-SEEA 280 (330)
T ss_dssp ----TB--CHHHHHH------HHTTSCCSEEEECCCCS------THHHHHHHHHHTTCCCEEEE------EECSS-HHHH
T ss_pred ----Ch--hHHHHHH------HHhhhCCCEEEEcCCCh------HHHHHHHHHHhcCCCEEEEE------EcccH-HHHH
Confidence 00 0001111 12568999999999965 2356677777664 589999 89877 6677
Q ss_pred hcCC
Q 029421 160 RNHP 163 (193)
Q Consensus 160 ~d~~ 163 (193)
||++
T Consensus 281 ~dri 284 (330)
T 2pt7_A 281 FIRL 284 (330)
T ss_dssp HHHH
T ss_pred hhhh
Confidence 8873
No 71
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.78 E-value=1.4e-19 Score=144.48 Aligned_cols=120 Identities=20% Similarity=0.185 Sum_probs=78.5
Q ss_pred cccCCCEEEEEcCCCCcHHHHHHHHHhhcccC-CCCeEEeceEchhhccCCceeeEEEeecCCcccccccccCCCCCCCC
Q 029421 2 AAGAGKCFLVTGPPGVGKTTLIMRVLESLKAS-NPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPLASINASSPESYR 80 (193)
Q Consensus 2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~-~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~ 80 (193)
++++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++.... ....++++|...+ .
T Consensus 21 ~i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~--~~~~~~v~q~~~g---------l------- 82 (261)
T 2eyu_A 21 CHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF--KHKKSIVNQREVG---------E------- 82 (261)
T ss_dssp GGCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC--CCSSSEEEEEEBT---------T-------
T ss_pred hhCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec--CCcceeeeHHHhC---------C-------
Confidence 46899999999999999999999999999998 999999886542111 1122333332100 0
Q ss_pred CCcccceeeehhhhhhhcccccccCCCCCEEEEecCCCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHh
Q 029421 81 WPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEVGKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLR 160 (193)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~ 160 (193)
.. . .+ +..+. ..+..+|+++++|||+ |+... ..+++....|.+|+++ +|+.+ +...|
T Consensus 83 -~~-~-------~l-~~~la-~aL~~~p~illlDEp~--D~~~~---~~~l~~~~~g~~vl~t------~H~~~-~~~~~ 139 (261)
T 2eyu_A 83 -DT-K-------SF-ADALR-AALREDPDVIFVGEMR--DLETV---ETALRAAETGHLVFGT------LHTNT-AIDTI 139 (261)
T ss_dssp -TB-S-------CH-HHHHH-HHHHHCCSEEEESCCC--SHHHH---HHHHHHHHTTCEEEEE------ECCSS-HHHHH
T ss_pred -CH-H-------HH-HHHHH-HHHhhCCCEEEeCCCC--CHHHH---HHHHHHHccCCEEEEE------eCcch-HHHHH
Confidence 00 0 00 11111 1145699999999998 76553 3444444459999999 88865 45556
Q ss_pred cC
Q 029421 161 NH 162 (193)
Q Consensus 161 d~ 162 (193)
|+
T Consensus 140 dr 141 (261)
T 2eyu_A 140 HR 141 (261)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 72
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.78 E-value=2e-20 Score=157.79 Aligned_cols=52 Identities=17% Similarity=0.059 Sum_probs=46.4
Q ss_pred cCCCC--CEEEEecC-CCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcC
Q 029421 104 VGADT--DLFVIDEV-GKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNH 162 (193)
Q Consensus 104 l~~~p--~llllDEp-~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~ 162 (193)
++.+| ++|||||| ++||+..+..+.++++.+.+|.+||+| ||+...+ .+||+
T Consensus 310 l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~i------tH~~~~~-~~~d~ 364 (415)
T 4aby_A 310 TVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVV------THLAQIA-ARAHH 364 (415)
T ss_dssp HHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEE------CSCHHHH-TTCSE
T ss_pred HHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEE------eCcHHHH-hhcCe
Confidence 66789 99999999 699999999999999998778999999 9998655 57887
No 73
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.77 E-value=1.2e-20 Score=170.95 Aligned_cols=52 Identities=15% Similarity=0.163 Sum_probs=46.9
Q ss_pred cCCC---CCEEEEecC-CCccccccchHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcC
Q 029421 104 VGAD---TDLFVIDEV-GKMELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNH 162 (193)
Q Consensus 104 l~~~---p~llllDEp-~~LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~ 162 (193)
|+.+ |+++||||| +|||+.++..+.++++.+.+ |.|||++ |||++++ ..||+
T Consensus 745 L~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvi------sHdl~~i-~~aDr 801 (842)
T 2vf7_A 745 LRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAV------EHKMQVV-AASDW 801 (842)
T ss_dssp TSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEE------CCCHHHH-TTCSE
T ss_pred HHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE------cCCHHHH-HhCCE
Confidence 6665 799999999 69999999999999998866 9999999 9999988 68998
No 74
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.75 E-value=3.5e-19 Score=147.87 Aligned_cols=136 Identities=18% Similarity=0.195 Sum_probs=82.0
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh------cc--CCceeeEEEeecC-Cc--ccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI------RQ--GGQRVGFEVVTLD-DR--RAPLA 69 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~------~~--~~~~ig~~~q~~~-~~--~~~~~ 69 (193)
|++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++... .. .+..++|++|++. .. .+..+
T Consensus 152 l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e 231 (359)
T 2og2_A 152 LGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSK 231 (359)
T ss_dssp CCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHH
T ss_pred eecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHH
Confidence 45789999999999999999999999999999999999999886321 11 1346899998643 11 12223
Q ss_pred cccCCCCCCCC---CCcccceeeehhhhhhhc---c-cccccCCCCC--EEEEecC-CCccccccchHHHHHHHHh-C-C
Q 029421 70 SINASSPESYR---WPTVGRYKVDVASFEAIA---L-PELQVGADTD--LFVIDEV-GKMELFSSSFFPAVLRILE-S-N 137 (193)
Q Consensus 70 ~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~---l-~~~~l~~~p~--llllDEp-~~LD~~~~~~~~~ll~~l~-~-g 137 (193)
++.+....... ....+........+..+. . -...++.+|+ +|++| | +|+|+..+ ++.+. . |
T Consensus 232 ~l~~~~~~~~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLD-pttglD~~~~------~~~~~~~~g 304 (359)
T 2og2_A 232 AVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQ------AREFNEVVG 304 (359)
T ss_dssp HHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHH------HHHHHHHTC
T ss_pred HHHHHHhCCCHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHH------HHHHHHhcC
Confidence 32211000000 000000000011111110 0 0112678999 99999 9 69998753 23333 3 8
Q ss_pred CcEEEE
Q 029421 138 IPVLAS 143 (193)
Q Consensus 138 ~tvl~~ 143 (193)
.|+|++
T Consensus 305 ~t~iii 310 (359)
T 2og2_A 305 ITGLIL 310 (359)
T ss_dssp CCEEEE
T ss_pred CeEEEE
Confidence 999999
No 75
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.75 E-value=2.2e-19 Score=163.44 Aligned_cols=52 Identities=15% Similarity=0.218 Sum_probs=45.9
Q ss_pred cCCC---CCEEEEecC-CCccccccchHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcC
Q 029421 104 VGAD---TDLFVIDEV-GKMELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNH 162 (193)
Q Consensus 104 l~~~---p~llllDEp-~~LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~ 162 (193)
|+.+ |+++||||| +|||+.++..+.++++.+.+ |.|||++ |||++++ ..||+
T Consensus 860 L~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvi------sHdl~~i-~~aDr 916 (972)
T 2r6f_A 860 LHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVI------EHNLDVI-KTADY 916 (972)
T ss_dssp HSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEE------CCCHHHH-TTCSE
T ss_pred HhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE------cCCHHHH-HhCCE
Confidence 6655 599999999 69999999999999998876 9999999 9999886 57887
No 76
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.73 E-value=3.1e-18 Score=137.24 Aligned_cols=133 Identities=13% Similarity=0.097 Sum_probs=66.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeec--CCcccccccccCCCCCCCCCCccc
Q 029421 8 CFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTL--DDRRAPLASINASSPESYRWPTVG 85 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~~~~~~~~~~ 85 (193)
.++|+||||||||||+++|+|+.+|++|+|.++|.++.. ...++.++|++|+. ....++.++..+............
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~-~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~ 82 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK-TVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEP 82 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCC-CCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc-ceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHH
Confidence 489999999999999999999999999999999987632 22346799999975 234455555444321110000000
Q ss_pred ceeeehhhhhhhcccccc--------c-CCCCCEEEEecC-CCccccccchHHHHHHHHhCCCcEEEEec
Q 029421 86 RYKVDVASFEAIALPELQ--------V-GADTDLFVIDEV-GKMELFSSSFFPAVLRILESNIPVLASIP 145 (193)
Q Consensus 86 ~~~~~~~~l~~~~l~~~~--------l-~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~g~tvl~~~~ 145 (193)
........+...-...++ + ...+.++++||| .++|+.. .++++.+.+..+||++++
T Consensus 83 i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD----~~~l~~L~~~~~vI~Vi~ 148 (270)
T 3sop_A 83 IEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD----LEFMKHLSKVVNIIPVIA 148 (270)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH----HHHHHHHHTTSEEEEEET
T ss_pred HHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH----HHHHHHHHhcCcEEEEEe
Confidence 000000111110001111 1 124459999999 6999876 455555554478888854
No 77
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.73 E-value=7.3e-19 Score=160.52 Aligned_cols=52 Identities=10% Similarity=0.188 Sum_probs=45.9
Q ss_pred cCCC---CCEEEEecC-CCccccccchHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcC
Q 029421 104 VGAD---TDLFVIDEV-GKMELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNH 162 (193)
Q Consensus 104 l~~~---p~llllDEp-~~LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~ 162 (193)
|+.+ |+++||||| +|||+.++..+.++++.+.+ |.|||++ |||++++ ..||+
T Consensus 878 L~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvi------sHdl~~i-~~aDr 934 (993)
T 2ygr_A 878 LQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVI------EHNLDVI-KTSDW 934 (993)
T ss_dssp HSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEE------CCCHHHH-TTCSE
T ss_pred HHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE------cCCHHHH-HhCCE
Confidence 6654 599999999 69999999999999998876 9999999 9999886 57888
No 78
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.72 E-value=7.4e-18 Score=153.82 Aligned_cols=53 Identities=15% Similarity=0.214 Sum_probs=45.8
Q ss_pred cCCC---CCEEEEecC-CCccccccchHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 104 VGAD---TDLFVIDEV-GKMELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 104 l~~~---p~llllDEp-~~LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
|+.+ |++|||||| +|||+.++..+.++++.+.+ |.|||++ |||++.+. .||++
T Consensus 820 L~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI------~HdL~~i~-~ADrI 877 (916)
T 3pih_A 820 LRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVI------EHNLDVIK-NADHI 877 (916)
T ss_dssp HTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEE------CCCHHHHT-TCSEE
T ss_pred HhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEE------eCCHHHHH-hCCEE
Confidence 5554 579999999 69999999999999998876 9999999 99998775 48884
No 79
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.72 E-value=5e-18 Score=132.11 Aligned_cols=125 Identities=16% Similarity=0.184 Sum_probs=81.8
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHhhccc--CCCCeEEeceEchhhccCCceeeEEEeecCC--cccc----cccccCC
Q 029421 3 AGAGKCFLVTGPPGVGKTTLIMRVLESLKA--SNPSLKVQGFYTGEIRQGGQRVGFEVVTLDD--RRAP----LASINAS 74 (193)
Q Consensus 3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~--~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~--~~~~----~~~~~~~ 74 (193)
.++|++++|+||||||||||+++|+|+++| ..|.|.+.+.+... .....++|+||++.. ..+. .++..+.
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~--~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~ 90 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP--GEVHGEHYFFVNHDEFKEMISRDAFLEHAEVF 90 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT--TCCBTTTBEECCHHHHHHHHHTTCEEEEEEET
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc--ccccCceEEECCHHHHHHHHhcCHHHHHHHHH
Confidence 578999999999999999999999999986 67888888765422 123568899986521 1111 2221110
Q ss_pred CCCCCCCCcccceeeehhhhhhhcccccccCCCCCEEEEecCCCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChh
Q 029421 75 SPESYRWPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEVGKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIP 154 (193)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~ 154 (193)
. . .+....+..+ .++..++++||| ||+.++..+.+.+. ++.+|+++ +|+++
T Consensus 91 ~----~-----~yg~~~~~v~-------~~l~~G~illLD----LD~~~~~~i~~~l~---~~~tI~i~------th~~~ 141 (219)
T 1s96_A 91 G----N-----YYGTSREAIE-------QVLATGVDVFLD----IDWQGAQQIRQKMP---HARSIFIL------PPSKI 141 (219)
T ss_dssp T----E-----EEEEEHHHHH-------HHHTTTCEEEEE----CCHHHHHHHHHHCT---TCEEEEEE------CSSHH
T ss_pred h----c-----cCCCCHHHHH-------HHHhcCCeEEEE----ECHHHHHHHHHHcc---CCEEEEEE------CCCHH
Confidence 0 0 0111111111 123457999999 99998777766654 58899999 99987
Q ss_pred HHHH
Q 029421 155 AVAR 158 (193)
Q Consensus 155 ~~~~ 158 (193)
.+.+
T Consensus 142 ~l~~ 145 (219)
T 1s96_A 142 ELDR 145 (219)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7644
No 80
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.70 E-value=3.8e-19 Score=137.90 Aligned_cols=145 Identities=14% Similarity=0.067 Sum_probs=74.7
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHhhccc-------CCCCeEEeceEchhhccCCceeeEEEeecCC-cccccccccCC
Q 029421 3 AGAGKCFLVTGPPGVGKTTLIMRVLESLKA-------SNPSLKVQGFYTGEIRQGGQRVGFEVVTLDD-RRAPLASINAS 74 (193)
Q Consensus 3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~-------~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~-~~~~~~~~~~~ 74 (193)
+++|++++|+||||||||||+++|+|.+.+ ..+.+++++.... ..+++++++|.... ..+..+++.+.
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~----~~~~i~~~~~~~~~~~~~~~~~~~~~ 97 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF----RPERIREIAQNRGLDPDEVLKHIYVA 97 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC----CHHHHHHHHHHTTSCHHHHHHTEEEE
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCC----CHHHHHHHHHHcCCCHHHHhhcEEEE
Confidence 679999999999999999999999997655 2335666654321 11234444443310 11222222111
Q ss_pred CCCCCCCCcccceeeehhhhhhhcccccccCCCCCEEEEecCC-Ccccccc------------chHHHHHHHH-hC-CCc
Q 029421 75 SPESYRWPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEVG-KMELFSS------------SFFPAVLRIL-ES-NIP 139 (193)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp~-~LD~~~~------------~~~~~ll~~l-~~-g~t 139 (193)
.. ..............+.+. ..+.-..+|+++++|||+ .+|+... ..+...+..+ ++ |+|
T Consensus 98 ~~----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~t 172 (231)
T 4a74_A 98 RA----FNSNHQMLLVQQAEDKIK-ELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIA 172 (231)
T ss_dssp EC----CSHHHHHHHHHHHHHHHH-HHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCE
T ss_pred ec----CChHHHHHHHHHHHHHHH-HhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCe
Confidence 00 000000000001111110 000014689999999994 7887431 1344444443 45 999
Q ss_pred EEEEecCCCCCCChhH----HHHHhcC
Q 029421 140 VLASIPAPKSGRDIPA----VARLRNH 162 (193)
Q Consensus 140 vl~~~~~~~~tHd~~~----~~~~~d~ 162 (193)
||++ ||+... +..+||+
T Consensus 173 vi~v------tH~~~~~g~~~~~~~d~ 193 (231)
T 4a74_A 173 VFVT------NQVQANGGHILAHSATL 193 (231)
T ss_dssp EEEE------EECC---------CCSE
T ss_pred EEEE------eecccCcchhhHhhceE
Confidence 9999 885444 6666664
No 81
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.69 E-value=4.8e-18 Score=139.22 Aligned_cols=51 Identities=14% Similarity=0.255 Sum_probs=44.0
Q ss_pred CCCCEEEEecC-CCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 106 ADTDLFVIDEV-GKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 106 ~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+|+++||||| ++||+..+..+.++++.+.+|.+||++ ||+. .+..+||+.
T Consensus 240 ~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~------tH~~-~~~~~~d~~ 291 (322)
T 1e69_A 240 KPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVI------THNK-IVMEAADLL 291 (322)
T ss_dssp SCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEE------CCCT-TGGGGCSEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEE------ECCH-HHHhhCceE
Confidence 67899999999 699999999999999888668899999 9995 456678873
No 82
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.69 E-value=2.1e-17 Score=152.76 Aligned_cols=131 Identities=23% Similarity=0.272 Sum_probs=83.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceee-EEEeecCCcccccccccCCCCCCCCCCcc
Q 029421 6 GKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVG-FEVVTLDDRRAPLASINASSPESYRWPTV 84 (193)
Q Consensus 6 Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig-~~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (193)
|++++|+||||||||||||++ |++.+- .++| |+||+.. ..++++++.......... ..
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i-Gl~~~~------------------aqiG~~Vpq~~~-~l~v~d~I~~rig~~d~~-~~ 847 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA-GLLAVM------------------AQMGCYVPAEVC-RLTPIDRVFTRLGASDRI-MS 847 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH-HHHHHH------------------HTTTCCEESSEE-EECCCSBEEEECC--------
T ss_pred CcEEEEECCCCCChHHHHHHH-HHHHHH------------------hheeEEeccCcC-CCCHHHHHHHHcCCHHHH-hh
Confidence 899999999999999999999 997641 1345 8887542 223333321100000000 00
Q ss_pred cceeeehhhhhhhcccccccCCCCCEEEEecC-CCcccccc-chHHHHHHHHh-C-CCcEEEEecCCCCCCChhHHHHHh
Q 029421 85 GRYKVDVASFEAIALPELQVGADTDLFVIDEV-GKMELFSS-SFFPAVLRILE-S-NIPVLASIPAPKSGRDIPAVARLR 160 (193)
Q Consensus 85 ~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp-~~LD~~~~-~~~~~ll~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~ 160 (193)
.......+ +..+.+ .+.++.+|+++||||| +|+|+... ..++++++.+. + |.++|++ ||+.+.+..++
T Consensus 848 ~~stf~~e-m~~~a~-al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~------TH~~el~~~~~ 919 (1022)
T 2o8b_B 848 GESTFFVE-LSETAS-ILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFS------THYHSLVEDYS 919 (1022)
T ss_dssp --CHHHHH-HHHHHH-HHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEE------CCCHHHHHHTS
T ss_pred chhhhHHH-HHHHHH-HHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEE------eCCHHHHHHhC
Confidence 00000001 111110 1226789999999999 69999874 66788888875 4 8999999 99999999889
Q ss_pred cCCCc
Q 029421 161 NHPGA 165 (193)
Q Consensus 161 d~~~~ 165 (193)
+++..
T Consensus 920 d~~~v 924 (1022)
T 2o8b_B 920 QNVAV 924 (1022)
T ss_dssp SCSSE
T ss_pred Cccee
Confidence 98643
No 83
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.69 E-value=6.5e-18 Score=130.86 Aligned_cols=149 Identities=13% Similarity=0.115 Sum_probs=82.9
Q ss_pred cccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEch--hhccCCceeeEEEeecCCc-ccccccccCCCCCC
Q 029421 2 AAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTG--EIRQGGQRVGFEVVTLDDR-RAPLASINASSPES 78 (193)
Q Consensus 2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~--~~~~~~~~ig~~~q~~~~~-~~~~~~~~~~~~~~ 78 (193)
.+++|++++|+||||||||||++.+++...++.|.+.+.+.+.. ........+++.++..... ....+.. ....
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 95 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEKKLIIIDAL---MKEK 95 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTTTEEEEECC---C---
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhCCEEEEecc---cccc
Confidence 36799999999999999999999999998888888887665431 1111111234433322110 0001100 0000
Q ss_pred CCCCcccceeeehhhhhhhcccccccCCCCC--EEEEecC-CCc--cccccchHHHHHHHH-hC-CCcEEEEecCCCCCC
Q 029421 79 YRWPTVGRYKVDVASFEAIALPELQVGADTD--LFVIDEV-GKM--ELFSSSFFPAVLRIL-ES-NIPVLASIPAPKSGR 151 (193)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~l~~~~l~~~p~--llllDEp-~~L--D~~~~~~~~~ll~~l-~~-g~tvl~~~~~~~~tH 151 (193)
......... ...+....+ .......+|+ ++++||| +.+ |+..+..+...++.+ ++ |+|||++ +|
T Consensus 96 ~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~------~h 166 (235)
T 2w0m_A 96 EDQWSLVNL-TPEELVNKV--IEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYAT------SQ 166 (235)
T ss_dssp -CTTBCSSC-CHHHHHHHH--HHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEE------EC
T ss_pred CceeeecCC-CHHHHHHHH--HHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEE------ec
Confidence 000000000 000111100 0011124899 9999999 455 887766677777666 34 9999999 88
Q ss_pred Ch--------hHHHHHhcC
Q 029421 152 DI--------PAVARLRNH 162 (193)
Q Consensus 152 d~--------~~~~~~~d~ 162 (193)
+. ..+.++||+
T Consensus 167 ~~~~~~~~~~~~~~~~~d~ 185 (235)
T 2w0m_A 167 YAITTSQAFGFGVEHVADG 185 (235)
T ss_dssp -----------CHHHHCSE
T ss_pred cCcccccccccchheeeeE
Confidence 87 447888887
No 84
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.68 E-value=1.5e-17 Score=146.78 Aligned_cols=133 Identities=14% Similarity=0.127 Sum_probs=77.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhccc-CCCCeEEeceEch--h---hccCCceeeEEEeecC--CcccccccccCCCCCCC
Q 029421 8 CFLVTGPPGVGKTTLIMRVLESLKA-SNPSLKVQGFYTG--E---IRQGGQRVGFEVVTLD--DRRAPLASINASSPESY 79 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl~~~-~~G~i~~~g~~~~--~---~~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~~~~ 79 (193)
.++|+||||||||||+++|+|+..| ++|.|.++|.++. . ....+..+||++|+.. +..++.+++........
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~ 126 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIA 126 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHH
T ss_pred eEEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhc
Confidence 4999999999999999999999988 7999999998852 1 2234578999998752 22233333211100000
Q ss_pred CCCcccceeeehhhhhhhcccccccCCCCCEEEEecC------C-CccccccchHHHHHHHH-hC--CCcEEEEecCCCC
Q 029421 80 RWPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEV------G-KMELFSSSFFPAVLRIL-ES--NIPVLASIPAPKS 149 (193)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp------~-~LD~~~~~~~~~ll~~l-~~--g~tvl~~~~~~~~ 149 (193)
. ..... .. +.+.+ .......|+++++||| + ++|+..+..+.++++.+ .+ +.+++++
T Consensus 127 ~-~~~~~---s~---~~i~l-~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vv------ 192 (608)
T 3szr_A 127 G-EGMGI---SH---ELITL-EISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVV------ 192 (608)
T ss_dssp C-SSSCC---CS---CCEEE-EEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEE------
T ss_pred C-Ccccc---ch---HHHHH-HhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEE------
Confidence 0 00000 00 00000 0113468999999999 5 89999998899999885 44 5666777
Q ss_pred CCChh
Q 029421 150 GRDIP 154 (193)
Q Consensus 150 tHd~~ 154 (193)
+||.+
T Consensus 193 t~~~d 197 (608)
T 3szr_A 193 PSNVD 197 (608)
T ss_dssp ESSSC
T ss_pred eccch
Confidence 77765
No 85
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.67 E-value=3e-18 Score=133.13 Aligned_cols=151 Identities=12% Similarity=0.060 Sum_probs=87.0
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh---ccCCceeeEEEeecCCc--cc----ccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI---RQGGQRVGFEVVTLDDR--RA----PLASI 71 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~---~~~~~~ig~~~q~~~~~--~~----~~~~~ 71 (193)
|+|++|++++|+||||||||||+++|+|++ | |+|.+ |.+.... ...+..++|+||++..+ .. .+++.
T Consensus 18 l~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~ 93 (218)
T 1z6g_A 18 GSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNEDFLEYD 93 (218)
T ss_dssp ----CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTTCEEEEE
T ss_pred eecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhccchhhhh
Confidence 678999999999999999999999999999 5 99999 7664321 12245688999875211 10 11111
Q ss_pred cCCCCCCCCCCcc--------cce---eeehhhhh--hhcc--c--ccccCCCCCEEEEecC-CCccccccchHHHHHHH
Q 029421 72 NASSPESYRWPTV--------GRY---KVDVASFE--AIAL--P--ELQVGADTDLFVIDEV-GKMELFSSSFFPAVLRI 133 (193)
Q Consensus 72 ~~~~~~~~~~~~~--------~~~---~~~~~~l~--~~~l--~--~~~l~~~p~llllDEp-~~LD~~~~~~~~~ll~~ 133 (193)
.+... ....+.. ... ......-+ +..+ . ...++.+|++++|||| +++|......+.+.+..
T Consensus 94 ~~~~~-~~g~~~~~i~~~l~~~~~~il~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~ 172 (218)
T 1z6g_A 94 NYANN-FYGTLKSEYDKAKEQNKICLFEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQ 172 (218)
T ss_dssp EETTE-EEEEEHHHHHHHHHTTCEEEEEECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred hcccc-cCCCcHHHHHHHHhCCCcEEEEecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 11000 0000000 000 00001111 1122 1 1235568899999999 69998877666655544
Q ss_pred Hh--------CCCcEEEEecCCCCCCChhHHHHHhcC
Q 029421 134 LE--------SNIPVLASIPAPKSGRDIPAVARLRNH 162 (193)
Q Consensus 134 l~--------~g~tvl~~~~~~~~tHd~~~~~~~~d~ 162 (193)
.. .+.+.|++ +||++++...+++
T Consensus 173 ~~~~~~~~h~~~~d~iiv------~~~~~ea~~~~~~ 203 (218)
T 1z6g_A 173 LNIELHEANLLNFNLSII------NDDLTLTYQQLKN 203 (218)
T ss_dssp HHHHHHHHTTSCCSEEEE------CSSHHHHHHHHHH
T ss_pred HHHHHHhhcccCCCEEEE------CCCHHHHHHHHHH
Confidence 32 35778888 8888887776654
No 86
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.66 E-value=1.1e-16 Score=133.62 Aligned_cols=120 Identities=15% Similarity=0.151 Sum_probs=79.0
Q ss_pred cccCCCEEEEEcCCCCcHHHHHHHHHhhcccC-CCCeEEeceEchhhccCCceeeEEEeecCCcccccccccCCCCCCCC
Q 029421 2 AAGAGKCFLVTGPPGVGKTTLIMRVLESLKAS-NPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPLASINASSPESYR 80 (193)
Q Consensus 2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~-~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~ 80 (193)
.+++|++++|+||||||||||+++|+|+++|+ +|+|.+.|.+... ..+..++|++|...+. .
T Consensus 132 ~~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~--~~~~~~~~v~Q~~~g~----~----------- 194 (372)
T 2ewv_A 132 CHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEY--VFKHKKSIVNQREVGE----D----------- 194 (372)
T ss_dssp TTSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCS--CCCCSSSEEEEEEBTT----T-----------
T ss_pred hhcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhh--hhccCceEEEeeecCC----C-----------
Confidence 36789999999999999999999999999998 8999877754421 2344577888742100 0
Q ss_pred CCcccceeeehhhhhhhcccccccCCCCCEEEEecCCCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHh
Q 029421 81 WPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEVGKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLR 160 (193)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~ 160 (193)
. ... ...+. ..+..+|+++++|||. |+.. +..+++....|.+|+.+ +|+.+ +...+
T Consensus 195 -~--~~~---~~~l~------~~L~~~pd~illdE~~--d~e~---~~~~l~~~~~g~~vi~t------~H~~~-~~~~~ 250 (372)
T 2ewv_A 195 -T--KSF---ADALR------AALREDPDVIFVGEMR--DLET---VETALRAAETGHLVFGT------LHTNT-AIDTI 250 (372)
T ss_dssp -B--SCS---HHHHH------HHTTSCCSEEEESCCC--SHHH---HHHHHHHHTTTCEEEEC------CCCCS-HHHHH
T ss_pred -H--HHH---HHHHH------HHhhhCcCEEEECCCC--CHHH---HHHHHHHHhcCCEEEEE------ECcch-HHHHH
Confidence 0 000 01111 1145689999999997 4332 34455554448999988 78744 44444
Q ss_pred cC
Q 029421 161 NH 162 (193)
Q Consensus 161 d~ 162 (193)
++
T Consensus 251 ~r 252 (372)
T 2ewv_A 251 HR 252 (372)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 87
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.65 E-value=4.9e-17 Score=132.34 Aligned_cols=137 Identities=12% Similarity=0.049 Sum_probs=80.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc------c--CCceeeEEEeecC--CcccccccccCC
Q 029421 5 AGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR------Q--GGQRVGFEVVTLD--DRRAPLASINAS 74 (193)
Q Consensus 5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~------~--~~~~ig~~~q~~~--~~~~~~~~~~~~ 74 (193)
+|++++|+||||||||||+++|+|+++|++|+|.+.|.++.... . .+..++|++|++. +..+..+++...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999998863211 1 1345889998752 111222222110
Q ss_pred CC---CCCCCCcccceeeehhh---hhhhcc-cccccCCCCCEEEEecCCCccccccchHHHHHHHHh-C-CCcEEEEec
Q 029421 75 SP---ESYRWPTVGRYKVDVAS---FEAIAL-PELQVGADTDLFVIDEVGKMELFSSSFFPAVLRILE-S-NIPVLASIP 145 (193)
Q Consensus 75 ~~---~~~~~~~~~~~~~~~~~---l~~~~l-~~~~l~~~p~llllDEp~~LD~~~~~~~~~ll~~l~-~-g~tvl~~~~ 145 (193)
.. ...-....+........ +.+... -...++.+|+.++| .||+.+.....+.++.+. . |.|+|+++|
T Consensus 181 ~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lL----vLDa~t~~~~~~~~~~~~~~~~~t~iivTh 256 (304)
T 1rj9_A 181 KARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWL----VLDAVTGQNGLEQAKKFHEAVGLTGVIVTK 256 (304)
T ss_dssp HHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEE----EEETTBCTHHHHHHHHHHHHHCCSEEEEEC
T ss_pred HhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEE----EEcHHHHHHHHHHHHHHHHHcCCcEEEEEC
Confidence 00 00000000000000011 111100 01126788995555 467766666666777664 4 999999933
No 88
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.63 E-value=3.6e-16 Score=129.77 Aligned_cols=119 Identities=18% Similarity=0.174 Sum_probs=71.6
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHhhcccC-CCCeEEeceEchhhccCCceeeEEEeecCCcccccccccCCCCCCCCC
Q 029421 3 AGAGKCFLVTGPPGVGKTTLIMRVLESLKAS-NPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPLASINASSPESYRW 81 (193)
Q Consensus 3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~-~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
+.+|++++|+||||||||||+++|+|+++|+ .|.|...+ +..+.. .....++++|...... .
T Consensus 120 ~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~e-d~~e~~-~~~~~~~v~q~~~~~~----~----------- 182 (356)
T 3jvv_A 120 DVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIE-DPIEFV-HESKKCLVNQREVHRD----T----------- 182 (356)
T ss_dssp HCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEE-SSCCSC-CCCSSSEEEEEEBTTT----B-----------
T ss_pred hCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEcc-CcHHhh-hhccccceeeeeeccc----c-----------
Confidence 4678899999999999999999999999987 45554333 221111 1112334444211000 0
Q ss_pred CcccceeeehhhhhhhcccccccCCCCCEEEEecCCCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhc
Q 029421 82 PTVGRYKVDVASFEAIALPELQVGADTDLFVIDEVGKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRN 161 (193)
Q Consensus 82 ~~~~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d 161 (193)
....+.+. ..|..+|+++++|||+ |... +..+++....|.+|+++ +|+.+.+ ..+|
T Consensus 183 ------~~~~~~La------~aL~~~PdvillDEp~--d~e~---~~~~~~~~~~G~~vl~t------~H~~~~~-~~~d 238 (356)
T 3jvv_A 183 ------LGFSEALR------SALREDPDIILVGEMR--DLET---IRLALTAAETGHLVFGT------LHTTSAA-KTID 238 (356)
T ss_dssp ------SCHHHHHH------HHTTSCCSEEEESCCC--SHHH---HHHHHHHHHTTCEEEEE------ESCSSHH-HHHH
T ss_pred ------CCHHHHHH------HHhhhCcCEEecCCCC--CHHH---HHHHHHHHhcCCEEEEE------EccChHH-HHHH
Confidence 00001111 1267899999999997 3222 23333433449999999 8887665 5666
Q ss_pred C
Q 029421 162 H 162 (193)
Q Consensus 162 ~ 162 (193)
+
T Consensus 239 R 239 (356)
T 3jvv_A 239 R 239 (356)
T ss_dssp H
T ss_pred H
Confidence 5
No 89
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.62 E-value=7.5e-17 Score=130.28 Aligned_cols=42 Identities=19% Similarity=0.323 Sum_probs=37.1
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCC-CeEEece
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNP-SLKVQGF 42 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G-~i~~~g~ 42 (193)
+.+.+|++++|+||||||||||++.|+|.+.|++| .|.+.+.
T Consensus 30 ~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~ 72 (296)
T 1cr0_A 30 LGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (296)
T ss_dssp CSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred cCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 46899999999999999999999999999999888 7765443
No 90
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.62 E-value=1.6e-16 Score=132.30 Aligned_cols=50 Identities=22% Similarity=0.228 Sum_probs=45.4
Q ss_pred CCCCEEEEecC-CCccccccchHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcC
Q 029421 106 ADTDLFVIDEV-GKMELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNH 162 (193)
Q Consensus 106 ~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~ 162 (193)
.+|+++||||| ++||+..+..+.++++.+.+ |.|||++ |||++. ...||+
T Consensus 302 ~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~i------tH~~~~-~~~~d~ 353 (365)
T 3qf7_A 302 GRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFI------THDREF-SEAFDR 353 (365)
T ss_dssp TTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEE------ESCHHH-HTTCSC
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEE------ecchHH-HHhCCE
Confidence 79999999999 69999999999999999876 9999999 999987 567887
No 91
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.62 E-value=4.6e-16 Score=127.03 Aligned_cols=102 Identities=16% Similarity=0.040 Sum_probs=64.1
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecCC-cccccccccCCCCCCCCC
Q 029421 3 AGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDD-RRAPLASINASSPESYRW 81 (193)
Q Consensus 3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~~~~~ 81 (193)
+++|++++|+||||||||||+++|+|+++|+.|. .++++++|+... ..+..++..+.. ....
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~---------------~~v~~v~qd~~~~~~t~~e~~~~~~--~~g~ 149 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHH---------------PRVDLVTTDGFLYPNAELQRRNLMH--RKGF 149 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTC---------------CCEEEEEGGGGBCCHHHHHHTTCTT--CTTS
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccCCC---------------CeEEEEecCccCCcccHHHHHHHHH--hcCC
Confidence 7889999999999999999999999999997663 357899987631 114444432211 0111
Q ss_pred Ccccceeeehhhhhhhccc-------c------------cccCCCCCEEEEecC-CCccc
Q 029421 82 PTVGRYKVDVASFEAIALP-------E------------LQVGADTDLFVIDEV-GKMEL 121 (193)
Q Consensus 82 ~~~~~~~~~~~~l~~~~l~-------~------------~~l~~~p~llllDEp-~~LD~ 121 (193)
+.........+.++.++-. . ..++.+|+++|+||| ..+|+
T Consensus 150 ~~~~d~~~~~~~L~~l~~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 150 PESYNRRALMRFVTSVKSGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp GGGBCHHHHHHHHHHHHTTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred ChHHHHHHHHHHHHHhCCCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 1111111222333333210 1 126789999999999 57765
No 92
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.61 E-value=3.6e-16 Score=143.23 Aligned_cols=52 Identities=13% Similarity=0.095 Sum_probs=42.6
Q ss_pred CCCCCEEEEecC-CCccccccch-HHHHHHHHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 105 GADTDLFVIDEV-GKMELFSSSF-FPAVLRILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 105 ~~~p~llllDEp-~~LD~~~~~~-~~~ll~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
+.+|+++||||| +|+|+..... ...+++.+. + |+++|++ ||+.+ +..+||+.
T Consensus 739 a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~a------TH~~e-l~~lad~~ 794 (934)
T 3thx_A 739 ATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFA------THFHE-LTALANQI 794 (934)
T ss_dssp CCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEE------ESCGG-GGGGGGTC
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEE------cCcHH-HHHHhccc
Confidence 689999999999 6999988754 478888875 4 9999999 99955 55688874
No 93
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.60 E-value=3.1e-17 Score=126.03 Aligned_cols=31 Identities=26% Similarity=0.252 Sum_probs=26.7
Q ss_pred cccCCCEEEEEcCCCCcHHHHHHHHHhhccc
Q 029421 2 AAGAGKCFLVTGPPGVGKTTLIMRVLESLKA 32 (193)
Q Consensus 2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~ 32 (193)
+.++|++++|+||||||||||+++|+|++.|
T Consensus 2 ~~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~ 32 (211)
T 3asz_A 2 SAPKPFVIGIAGGTASGKTTLAQALARTLGE 32 (211)
T ss_dssp ---CCEEEEEEESTTSSHHHHHHHHHHHHGG
T ss_pred CCCCcEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4578999999999999999999999999865
No 94
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.60 E-value=4.6e-16 Score=140.78 Aligned_cols=129 Identities=16% Similarity=0.107 Sum_probs=76.3
Q ss_pred cCCCEEEEEcCCCCcHHHHHHHHHhhcc-cCCCCeEEeceEchhhccCCceeeEEEeecCCcccccccccCCCCCCCCCC
Q 029421 4 GAGKCFLVTGPPGVGKTTLIMRVLESLK-ASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPLASINASSPESYRWP 82 (193)
Q Consensus 4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~~-~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~ 82 (193)
++|++++|+||||||||||||+|+|+.. ...|.. +. .....++++++-+ ......+++.....
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~------vp---a~~~~i~~~~~i~-~~~~~~d~l~~~~s------ 668 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSY------VP---AQKVEIGPIDRIF-TRVGAADDLASGRS------ 668 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCC------BS---SSEEEECCCCEEE-EEEC----------------
T ss_pred CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCcc------cc---hhcccceeHHHHH-hhCCHHHHHHhhhh------
Confidence 5799999999999999999999999853 333421 11 1123345444311 11111121111000
Q ss_pred cccceeeehhhhhhhcccccccCCCCCEEEEecC-CCccccccch-HHHHHHHHh-C-CCcEEEEecCCCCCCChhHHHH
Q 029421 83 TVGRYKVDVASFEAIALPELQVGADTDLFVIDEV-GKMELFSSSF-FPAVLRILE-S-NIPVLASIPAPKSGRDIPAVAR 158 (193)
Q Consensus 83 ~~~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp-~~LD~~~~~~-~~~ll~~l~-~-g~tvl~~~~~~~~tHd~~~~~~ 158 (193)
. ...+..+... .+..+.+|+++||||| +|+|+..... ..++++.+. + |.++|++ ||+.+.+ .
T Consensus 669 ---t--f~~e~~~~~~--il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~------TH~~el~-~ 734 (800)
T 1wb9_A 669 ---T--FMVEMTETAN--ILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFA------THYFELT-Q 734 (800)
T ss_dssp ------CHHHHHHHHH--HHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEE------CSCGGGG-G
T ss_pred ---h--hhHHHHHHHH--HHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEE------eCCHHHH-H
Confidence 0 0001111000 0124789999999999 6999988754 478888775 3 8999999 9997654 5
Q ss_pred HhcC
Q 029421 159 LRNH 162 (193)
Q Consensus 159 ~~d~ 162 (193)
+||+
T Consensus 735 l~d~ 738 (800)
T 1wb9_A 735 LPEK 738 (800)
T ss_dssp HHHH
T ss_pred Hhhh
Confidence 7876
No 95
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.60 E-value=3.6e-17 Score=139.17 Aligned_cols=147 Identities=14% Similarity=0.078 Sum_probs=89.5
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEece---Echhh-------ccCCceeeEEEeecC---Ccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGF---YTGEI-------RQGGQRVGFEVVTLD---DRRAP 67 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~---~~~~~-------~~~~~~ig~~~q~~~---~~~~~ 67 (193)
|+|.+|++++|+||||||||||+++|+|+.+|+.|.|.++|+ ++... ...++.++|++|... ...+.
T Consensus 152 l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v 231 (438)
T 2dpy_A 152 LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLLRMQG 231 (438)
T ss_dssp SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECTTSCHHHHHHH
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccccccCceEEEEECCCCCHHHHHHH
Confidence 678999999999999999999999999999999999999998 33221 123467899998531 11222
Q ss_pred cccccCCCCCCCCCCcccceeeehhhhhhh--ccccccc-CCCCCEEEEecCCCccccccchHHHHHHHHhC-----CC-
Q 029421 68 LASINASSPESYRWPTVGRYKVDVASFEAI--ALPELQV-GADTDLFVIDEVGKMELFSSSFFPAVLRILES-----NI- 138 (193)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~l-~~~p~llllDEp~~LD~~~~~~~~~ll~~l~~-----g~- 138 (193)
.++..+...... ... .......+.+.++ +....++ +.+|++ -+|+|+..+..+.+++..+.+ |.
T Consensus 232 ~~~~~~~ae~~~-~~~-~~v~~~ld~l~~lS~g~qrvslAl~~p~~-----t~glD~~~~~~l~~ll~r~~~~~~~~Gsi 304 (438)
T 2dpy_A 232 AAYATRIAEDFR-DRG-QHVLLIMDSLTRYAMAQREIALAIGEPPA-----TKGYPPSVFAKLPALVERAGNGIHGGGSI 304 (438)
T ss_dssp HHHHHHHHHHHH-TTT-CEEEEEEECHHHHHHHHHHHHHHTTCCCC-----SSSCCTTHHHHHHHHHTTCSCCSTTSCEE
T ss_pred HHHHHHHHHHHH-hCC-CCHHHHHHhHHHHHHHHHHHHHHhCCCcc-----cccCCHHHHHHHHHHHHHHHhccCCCCcc
Confidence 222111100000 000 0000111111111 0011111 445554 249999999999999988743 54
Q ss_pred ----cEEEEecCCCCCCChhHHHHHhcC
Q 029421 139 ----PVLASIPAPKSGRDIPAVARLRNH 162 (193)
Q Consensus 139 ----tvl~~~~~~~~tHd~~~~~~~~d~ 162 (193)
||+++ |||+. ..+||+
T Consensus 305 T~~~tVlv~------tHdl~--~~iad~ 324 (438)
T 2dpy_A 305 TAFYTVLTE------GDDQQ--DPIADS 324 (438)
T ss_dssp EEEEEEECS------SSCSC--CHHHHH
T ss_pred cceeEEEEe------CCCcc--chhhce
Confidence 88888 99986 445554
No 96
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.60 E-value=3e-16 Score=141.25 Aligned_cols=124 Identities=18% Similarity=0.159 Sum_probs=73.3
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHhhcc-cCCCCeEEeceEchhhccCCceeeEEEeecCCcccccccccCCCCCCCCC
Q 029421 3 AGAGKCFLVTGPPGVGKTTLIMRVLESLK-ASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPLASINASSPESYRW 81 (193)
Q Consensus 3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~-~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
+. |++++|+||||||||||+|+|+|+.. ++.|.+.- ..+..+++++|-+ ...+..+++....
T Consensus 574 l~-g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vp---------a~~~~i~~v~~i~-~~~~~~d~l~~g~------ 636 (765)
T 1ewq_A 574 MA-HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVP---------AEEAHLPLFDGIY-TRIGASDDLAGGK------ 636 (765)
T ss_dssp ES-SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBS---------SSEEEECCCSEEE-EECCC------CC------
T ss_pred CC-CcEEEEECCCCCChHHHHHHHHhhhhhcccCceee---------hhccceeeHHHhh-ccCCHHHHHHhcc------
Confidence 44 99999999999999999999999974 77786521 1234566665521 1122222221110
Q ss_pred Ccccceeeehhhhhhhcccc-cccCCCCCEEEEecC---C-CccccccchHHHHHHHHhC-CCcEEEEecCCCCCCChhH
Q 029421 82 PTVGRYKVDVASFEAIALPE-LQVGADTDLFVIDEV---G-KMELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIPA 155 (193)
Q Consensus 82 ~~~~~~~~~~~~l~~~~l~~-~~l~~~p~llllDEp---~-~LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~ 155 (193)
.. . ..+.+.+.. +..+.+|+++||||| + ++|+.+.. .++++.+.+ |.++|++ ||+.+.
T Consensus 637 S~-----~---~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~--~~i~~~L~~~g~~vl~~------TH~~~l 700 (765)
T 1ewq_A 637 ST-----F---MVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIA--TAVAEALHERRAYTLFA------THYFEL 700 (765)
T ss_dssp SH-----H---HHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHH--HHHHHHHHHHTCEEEEE------CCCHHH
T ss_pred cH-----H---HHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHH--HHHHHHHHhCCCEEEEE------eCCHHH
Confidence 00 0 011111111 113789999999999 4 68876542 233333433 8999999 999765
Q ss_pred HHHHh
Q 029421 156 VARLR 160 (193)
Q Consensus 156 ~~~~~ 160 (193)
+ .++
T Consensus 701 ~-~~~ 704 (765)
T 1ewq_A 701 T-ALG 704 (765)
T ss_dssp H-TCC
T ss_pred H-Hhh
Confidence 4 455
No 97
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.59 E-value=3.7e-15 Score=122.69 Aligned_cols=160 Identities=13% Similarity=0.126 Sum_probs=85.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHh-hcccCCCCeEEeceEchhhccCCceeeEEEeecCCcccccccccCCCCCCCCCCccc
Q 029421 7 KCFLVTGPPGVGKTTLIMRVLE-SLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPLASINASSPESYRWPTVG 85 (193)
Q Consensus 7 e~~~l~GpnGsGKSTLl~~i~g-l~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (193)
..+.|.||||+||||+++++++ ++.|+.|.+.++|.+.......+..++++++... +. +..... ....
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~-----~~---~~~~~~-~~~~-- 105 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYH-----LE---ITPSDM-GNND-- 105 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSE-----EE---ECCC-----CC--
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccce-----EE---ecHhhc-CCcc--
Confidence 3499999999999999999999 7899999999998765322223456777766431 00 000000 0000
Q ss_pred ceeeehhhhhh----hcccc---cc-cCCCCCEEEEecCCCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChhH-H
Q 029421 86 RYKVDVASFEA----IALPE---LQ-VGADTDLFVIDEVGKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPA-V 156 (193)
Q Consensus 86 ~~~~~~~~l~~----~~l~~---~~-l~~~p~llllDEp~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~-~ 156 (193)
. ....+.++. ..+.. ++ +..+|+++++|||..||+.++..+.+++.....+.++|++ ||+... .
T Consensus 106 ~-~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~------t~~~~~l~ 178 (354)
T 1sxj_E 106 R-IVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMV------CDSMSPII 178 (354)
T ss_dssp H-HHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEE------ESCSCSSC
T ss_pred h-HHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEE------eCCHHHHH
Confidence 0 001111111 11110 01 2568999999999669988877777777776558899999 676543 2
Q ss_pred HHHhcCCCcEEEEeCCCChhHHHHHHHHHH
Q 029421 157 ARLRNHPGATIFTLSPGNRDSLKDNIYYQL 186 (193)
Q Consensus 157 ~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~ 186 (193)
..+.+|. ..+.+.+.+.+++.+.+....
T Consensus 179 ~~l~sR~--~~~~~~~~~~~~~~~~l~~~~ 206 (354)
T 1sxj_E 179 APIKSQC--LLIRCPAPSDSEISTILSDVV 206 (354)
T ss_dssp HHHHTTS--EEEECCCCCHHHHHHHHHHHH
T ss_pred HHHHhhc--eEEecCCcCHHHHHHHHHHHH
Confidence 3455553 455666667767666665543
No 98
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.58 E-value=5.8e-16 Score=114.59 Aligned_cols=57 Identities=19% Similarity=0.236 Sum_probs=46.6
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeec
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTL 61 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~ 61 (193)
|++++|++++|+||||||||||+|+|+|++ |++|+|.++|+++....... .+++|++
T Consensus 28 l~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~~~~~---~~~~q~~ 84 (158)
T 1htw_A 28 LHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEEYNIA---GKMIYHF 84 (158)
T ss_dssp HCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEEEEET---TEEEEEE
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeeeccCC---Ccceecc
Confidence 468999999999999999999999999999 99999999998763221111 2677765
No 99
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.58 E-value=3.9e-16 Score=142.63 Aligned_cols=133 Identities=14% Similarity=0.130 Sum_probs=74.1
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhccc-CCCCeEEeceEchhhccCCceeeEEEeecCCcccccccccCCCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKA-SNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPLASINASSPESY 79 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~-~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~ 79 (193)
|++++|++++|+||||||||||||+++++.-. ..|.. + . .....++++.+ .+..+.. ....
T Consensus 668 l~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~-v-----p---a~~~~i~~~d~-------i~~~ig~--~d~l 729 (918)
T 3thx_B 668 LSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSY-V-----P---AEEATIGIVDG-------IFTRMGA--ADNI 729 (918)
T ss_dssp ECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCC-B-----S---SSEEEEECCSE-------EEEEC--------
T ss_pred ccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCcc-c-----c---chhhhhhHHHH-------HHHhCCh--HHHH
Confidence 45778999999999999999999999876321 11211 0 0 00111111100 0111000 0000
Q ss_pred CCCcccceeeehhhhhhhcccccccCCCCCEEEEecC-CCccccccchH-HHHHHHHh-C-CCcEEEEecCCCCCCChhH
Q 029421 80 RWPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEV-GKMELFSSSFF-PAVLRILE-S-NIPVLASIPAPKSGRDIPA 155 (193)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp-~~LD~~~~~~~-~~ll~~l~-~-g~tvl~~~~~~~~tHd~~~ 155 (193)
.... . ....+..+...+. ..+.+|+++||||| +|+|+.....+ ..+++.+. + |.++|++ ||+.+.
T Consensus 730 ~~~~-s--tfs~em~~~~~il--~~a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~v------TH~~el 798 (918)
T 3thx_B 730 YKGR-S--TFMEELTDTAEII--RKATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFV------THYPPV 798 (918)
T ss_dssp -----C--CHHHHHHHHHHHH--HHCCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEE------CSCGGG
T ss_pred HHhH-H--HhhHHHHHHHHHH--HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEE------eCcHHH
Confidence 0000 0 0001111111111 12689999999999 69999887555 48888774 4 9999999 999765
Q ss_pred HHHHhcCC
Q 029421 156 VARLRNHP 163 (193)
Q Consensus 156 ~~~~~d~~ 163 (193)
+ .++++.
T Consensus 799 ~-~l~~~~ 805 (918)
T 3thx_B 799 C-ELEKNY 805 (918)
T ss_dssp G-GHHHHT
T ss_pred H-HHHhhc
Confidence 4 566653
No 100
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.58 E-value=2e-15 Score=110.55 Aligned_cols=85 Identities=13% Similarity=0.194 Sum_probs=61.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecCCcccccccccCCCCCCCCCCcc
Q 029421 5 AGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPLASINASSPESYRWPTV 84 (193)
Q Consensus 5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (193)
+|+.++|+||||||||||++++++.+.+ +|. ++.|+.... . .. .
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~----------------~~~~~~~~~---~--~~-----------~--- 78 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGK----------------NAAYIDAAS---M--PL-----------T--- 78 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTC----------------CEEEEETTT---S--CC-----------C---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCC----------------cEEEEcHHH---h--hH-----------H---
Confidence 6899999999999999999999999876 351 112222100 0 00 0
Q ss_pred cceeeehhhhhhhcccccccCCCCCEEEEecCCCccccccchHHHHHHHHhC-CCc-EEEE
Q 029421 85 GRYKVDVASFEAIALPELQVGADTDLFVIDEVGKMELFSSSFFPAVLRILES-NIP-VLAS 143 (193)
Q Consensus 85 ~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp~~LD~~~~~~~~~ll~~l~~-g~t-vl~~ 143 (193)
.++.+|++|++|||+.++...+..+..++..+.+ |++ +|++
T Consensus 79 ------------------~~~~~~~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiit 121 (149)
T 2kjq_A 79 ------------------DAAFEAEYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLG 121 (149)
T ss_dssp ------------------GGGGGCSEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred ------------------HHHhCCCEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEE
Confidence 0134689999999977777667778888888766 888 8888
No 101
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.57 E-value=4.7e-16 Score=116.73 Aligned_cols=107 Identities=14% Similarity=0.229 Sum_probs=70.1
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCC-eEEeceEchhhccCCceeeEEEeecCCcccccccccCCCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPS-LKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPLASINASSPESY 79 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~-i~~~g~~~~~~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~ 79 (193)
|++.+|+.++|+||||||||||++++++.+.|++|. +.+ +... ........ ..
T Consensus 33 ~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~-----------------~~~~-----~~~~~~~~----~~ 86 (180)
T 3ec2_A 33 FNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYF-----------------FDTK-----DLIFRLKH----LM 86 (180)
T ss_dssp CCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCE-----------------EEHH-----HHHHHHHH----HH
T ss_pred ccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEE-----------------EEHH-----HHHHHHHH----Hh
Confidence 456789999999999999999999999999876663 211 1000 00000000 00
Q ss_pred CCCcccceeeehhhhhhhcccccccCCCCCEEEEecC-C-CccccccchHHHHHHHHhC-CCcEEEEecCCCCCCCh
Q 029421 80 RWPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEV-G-KMELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDI 153 (193)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp-~-~LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~ 153 (193)
.. .. ....++. +.+|++|++||| . ++|+..+..+..++....+ |+++|++ ||..
T Consensus 87 --~~-~~---~~~~~~~--------~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~t------sn~~ 143 (180)
T 3ec2_A 87 --DE-GK---DTKFLKT--------VLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIIT------TNYS 143 (180)
T ss_dssp --HH-TC---CSHHHHH--------HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEE------CCCC
T ss_pred --cC-ch---HHHHHHH--------hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEE------cCCC
Confidence 00 00 0011111 247999999999 4 8999888888888887764 9999999 7754
No 102
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.57 E-value=2.5e-15 Score=118.35 Aligned_cols=49 Identities=20% Similarity=0.173 Sum_probs=38.4
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeec
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTL 61 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~ 61 (193)
|++++|++++|+||||||||||+++|+|++ |.+.++ ..++.++|++|+.
T Consensus 20 l~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~--------~~~~~i~~v~~d~ 68 (245)
T 2jeo_A 20 FQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE--------QRQRKVVILSQDR 68 (245)
T ss_dssp ---CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC--------GGGCSEEEEEGGG
T ss_pred ccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc--------ccCCceEEEeCCc
Confidence 678999999999999999999999999986 666554 1245688998874
No 103
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.57 E-value=1.9e-15 Score=125.63 Aligned_cols=124 Identities=10% Similarity=0.094 Sum_probs=78.8
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEE-eecCCcccccccccCCCCCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEV-VTLDDRRAPLASINASSPESY 79 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~-q~~~~~~~~~~~~~~~~~~~~ 79 (193)
|++++|++++|+||||||||||+++|+|+++|++|.|.++|..-......+..++|++ |+..... .
T Consensus 170 ~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~------------~- 236 (361)
T 2gza_A 170 RAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEE------------N- 236 (361)
T ss_dssp HHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC---------------------
T ss_pred HHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCcccccc------------c-
Confidence 3578999999999999999999999999999999999998853211222345678877 5321000 0
Q ss_pred CCCcccceeeehhhhhhhcccccccCCCCCEEEEecCCCccccccchHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHH
Q 029421 80 RWPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEVGKMELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIPAVAR 158 (193)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp~~LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~ 158 (193)
.. ....+.+.. .+..+|+.+++||+.+ ....++++.+.. ..+++.+ +|... +..
T Consensus 237 --~~----~t~~~~i~~------~l~~~pd~~l~~e~r~------~~~~~~l~~l~~g~~~~l~t------~H~~~-~~~ 291 (361)
T 2gza_A 237 --AP----VTAATLLRS------CLRMKPTRILLAELRG------GEAYDFINVAASGHGGSITS------CHAGS-CEL 291 (361)
T ss_dssp --------CCHHHHHHH------HTTSCCSEEEESCCCS------THHHHHHHHHHTTCCSCEEE------EECSS-HHH
T ss_pred --cc----cCHHHHHHH------HHhcCCCEEEEcCchH------HHHHHHHHHHhcCCCeEEEE------ECCCC-HHH
Confidence 00 001111111 1346899999999854 235567777766 4578888 56633 445
Q ss_pred HhcC
Q 029421 159 LRNH 162 (193)
Q Consensus 159 ~~d~ 162 (193)
.++|
T Consensus 292 ~~~R 295 (361)
T 2gza_A 292 TFER 295 (361)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5555
No 104
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.53 E-value=1e-15 Score=132.97 Aligned_cols=140 Identities=14% Similarity=0.084 Sum_probs=83.0
Q ss_pred cccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCC--eEEeceEch-hhccCCceeeEEEeecCCcccccccccCCCCCC
Q 029421 2 AAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPS--LKVQGFYTG-EIRQGGQRVGFEVVTLDDRRAPLASINASSPES 78 (193)
Q Consensus 2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~--i~~~g~~~~-~~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~ 78 (193)
.+.+|++++|+||||||||||+++++|..+++ |. +++.+++.. ........+++..+. +. .......
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~~vi~~~~ee~~~~l~~~~~~~g~~~~~-------~~--~~g~~~~ 346 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACAN-KERAILFAYEESRAQLLRNAYSWGMDFEE-------ME--RQNLLKI 346 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TCCEEEEESSSCHHHHHHHHHTTSCCHHH-------HH--HTTSEEE
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CCCEEEEEEeCCHHHHHHHHHHcCCCHHH-------HH--hCCCEEE
Confidence 47899999999999999999999999999885 64 344443321 110000011110000 00 0000000
Q ss_pred CCCCcccceeeehhhhhhhcccccccCCCCCEEEEecC-CCcccc-----ccchHHHHHHHHhC-CCcEEEEecCCCCCC
Q 029421 79 YRWPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEV-GKMELF-----SSSFFPAVLRILES-NIPVLASIPAPKSGR 151 (193)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp-~~LD~~-----~~~~~~~ll~~l~~-g~tvl~~~~~~~~tH 151 (193)
..... . ...-....++.+. ..+..+|+++++| | ++||.. .+..+.++++.+++ |+|||++ +|
T Consensus 347 ~~~~p-~--~LS~g~~q~~~~a-~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilv------sh 415 (525)
T 1tf7_A 347 VCAYP-E--SAGLEDHLQIIKS-EINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFT------NT 415 (525)
T ss_dssp CCCCG-G--GSCHHHHHHHHHH-HHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEE------EE
T ss_pred EEecc-c--cCCHHHHHHHHHH-HHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEE------EC
Confidence 00000 0 0000011111111 1256899999999 9 699999 88888999998876 9999999 88
Q ss_pred Ch----------hHHHHHhcC
Q 029421 152 DI----------PAVARLRNH 162 (193)
Q Consensus 152 d~----------~~~~~~~d~ 162 (193)
+. ..+..+||+
T Consensus 416 ~~~~~~~~~~~~~~l~~~~D~ 436 (525)
T 1tf7_A 416 SDQFMGAHSITDSHISTITDT 436 (525)
T ss_dssp CSSSSCCCSSCSSCCTTTCSE
T ss_pred cccccCcccccCcccceeeeE
Confidence 87 556677776
No 105
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.53 E-value=6.1e-16 Score=128.13 Aligned_cols=137 Identities=15% Similarity=0.087 Sum_probs=77.8
Q ss_pred cccCCCEEEEEcCCCCcHHHHHHHHHhhc--ccCC----CC-eEEeceEchhhccCCceeeEEEeecCC-cccccccccC
Q 029421 2 AAGAGKCFLVTGPPGVGKTTLIMRVLESL--KASN----PS-LKVQGFYTGEIRQGGQRVGFEVVTLDD-RRAPLASINA 73 (193)
Q Consensus 2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~--~~~~----G~-i~~~g~~~~~~~~~~~~ig~~~q~~~~-~~~~~~~~~~ 73 (193)
.+++|++++|+||||||||||++.+++.. +|++ |. +++++.... ..+++++++|.+.. ..+..+++.+
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~----~~~~i~~i~q~~~~~~~~v~~ni~~ 202 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF----RPERIREIAQNRGLDPDEVLKHIYV 202 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC----CHHHHHHHHHTTTCCHHHHGGGEEE
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC----CHHHHHHHHHHcCCCHHHHhhCEEE
Confidence 57899999999999999999999999998 6766 57 888876541 12446666664411 1122333222
Q ss_pred CCCCCCCCCcccceeeehhhhhhhc--ccccc-cCCCCCEEEEecC-CCccccc------------cchHHHHHHHH-hC
Q 029421 74 SSPESYRWPTVGRYKVDVASFEAIA--LPELQ-VGADTDLFVIDEV-GKMELFS------------SSFFPAVLRIL-ES 136 (193)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~l~~~~--l~~~~-l~~~p~llllDEp-~~LD~~~------------~~~~~~ll~~l-~~ 136 (193)
... +.... ..+.++.+. +..++ =..+|+++|+||| +.+|+.. ...+...+..+ ++
T Consensus 203 ~~~----~~~~~----~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~ 274 (349)
T 1pzn_A 203 ARA----FNSNH----QMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANL 274 (349)
T ss_dssp EEC----CSHHH----HHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred Eec----CChHH----HHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 100 00000 001111110 00000 0168999999999 5888753 12233333333 34
Q ss_pred -CCcEEEEecCCCCCCChhHH
Q 029421 137 -NIPVLASIPAPKSGRDIPAV 156 (193)
Q Consensus 137 -g~tvl~~~~~~~~tHd~~~~ 156 (193)
|+|||++ +|.....
T Consensus 275 ~~~tvii~------~h~~~~~ 289 (349)
T 1pzn_A 275 YDIAVFVT------NQVQARP 289 (349)
T ss_dssp TTCEEEEE------EECC---
T ss_pred cCcEEEEE------ccccccc
Confidence 8999999 7765543
No 106
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.52 E-value=2.7e-16 Score=130.15 Aligned_cols=145 Identities=18% Similarity=0.192 Sum_probs=85.5
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc---------cCCceeeEEEeecCCcccccccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR---------QGGQRVGFEVVTLDDRRAPLASI 71 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~---------~~~~~ig~~~q~~~~~~~~~~~~ 71 (193)
|+|.+|++++|+||||||||||+++|+|+.+|+.|.|.+.|+...+.. ...+.+.+++|...+. ..+.
T Consensus 66 l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~~~~~---~~r~ 142 (347)
T 2obl_A 66 LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTSDRPA---LERM 142 (347)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECTTSCH---HHHH
T ss_pred eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECCCCCH---HHHH
Confidence 678999999999999999999999999999999999999887632211 1123456666532111 1110
Q ss_pred cCC-----CCCCCCCCcccceeeehhhhhhh--ccccccc-CCCCCEEEEecCCCccccccchHHHHHHHHh--C-CC--
Q 029421 72 NAS-----SPESYRWPTVGRYKVDVASFEAI--ALPELQV-GADTDLFVIDEVGKMELFSSSFFPAVLRILE--S-NI-- 138 (193)
Q Consensus 72 ~~~-----~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~l-~~~p~llllDEp~~LD~~~~~~~~~ll~~l~--~-g~-- 138 (193)
... ...... ..........+...++ +...+++ +.+|++ -.|+|+..+..+.++++.+. + |.
T Consensus 143 ~~~~~~~~~ae~~~-~~~~~vl~~ld~~~~lS~g~r~v~lal~~p~~-----t~Gldp~~~~~l~~ller~~~~~~GsiT 216 (347)
T 2obl_A 143 KAAFTATTIAEYFR-DQGKNVLLMMDSVTRYARAARDVGLASGEPDV-----RGGFPPSVFSSLPKLLERAGPAPKGSIT 216 (347)
T ss_dssp HHHHHHHHHHHHHH-TTTCEEEEEEETHHHHHHHHHHHHHHTTCCCC-----BTTBCHHHHHHHHHHHTTCEECSSSEEE
T ss_pred HHHHHHHHHHHHHH-hccccHHHHHhhHHHHHHHHHHHHHHcCCCCc-----ccCCCHHHHHHHHHHHHHHhCCCCCCee
Confidence 000 000000 0000000000101110 1111111 234433 14999999999999998875 4 76
Q ss_pred ---cEEEEecCCCCCCChhHHHHHhcC
Q 029421 139 ---PVLASIPAPKSGRDIPAVARLRNH 162 (193)
Q Consensus 139 ---tvl~~~~~~~~tHd~~~~~~~~d~ 162 (193)
||+++ |||++ ..+||+
T Consensus 217 ~~~tVl~~------thdl~--~~i~d~ 235 (347)
T 2obl_A 217 AIYTVLLE------SDNVN--DPIGDE 235 (347)
T ss_dssp EEEEEECC------SSCCC--CHHHHH
T ss_pred eEEEEEEe------CCCCC--Chhhhh
Confidence 88888 99987 567887
No 107
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.52 E-value=1.6e-15 Score=124.55 Aligned_cols=42 Identities=26% Similarity=0.199 Sum_probs=39.7
Q ss_pred cCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEch
Q 029421 4 GAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTG 45 (193)
Q Consensus 4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~ 45 (193)
++|++++|+||||||||||+++|+|+++|++|+|.+.|.++.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~ 168 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTF 168 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeeccc
Confidence 579999999999999999999999999999999999998863
No 108
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.51 E-value=1.2e-16 Score=132.93 Aligned_cols=147 Identities=11% Similarity=0.037 Sum_probs=82.7
Q ss_pred CcccC--CCEEEEEcCCCCcHHHHHHHHHhhcccCC----CCeEEec----eEch-hhccCCceeeEEEeecCC-ccccc
Q 029421 1 MAAGA--GKCFLVTGPPGVGKTTLIMRVLESLKASN----PSLKVQG----FYTG-EIRQGGQRVGFEVVTLDD-RRAPL 68 (193)
Q Consensus 1 l~i~~--Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~----G~i~~~g----~~~~-~~~~~~~~ig~~~q~~~~-~~~~~ 68 (193)
++|.+ |+.++|+||||||||||+++|+|+++|++ |++.+++ .+.. ..... .++++++|.+.. ..+..
T Consensus 163 ~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~~~~~~~~-~~I~~~~q~~~~~~~t~~ 241 (365)
T 1lw7_A 163 KEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDY-PQMALGHQRYIDYAVRHS 241 (365)
T ss_dssp TTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTTSSCTTTH-HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcccCChhHH-HHHHHHHHHHHHHHHhcc
Confidence 46778 99999999999999999999999999999 9888743 2221 01111 346666654310 01112
Q ss_pred ccccCCCCCCCCCCcccceeeehhhhhhhc----ccccccCCCCCEEEEec---C-------CCccccccchHHHHHHHH
Q 029421 69 ASINASSPESYRWPTVGRYKVDVASFEAIA----LPELQVGADTDLFVIDE---V-------GKMELFSSSFFPAVLRIL 134 (193)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----l~~~~l~~~p~llllDE---p-------~~LD~~~~~~~~~ll~~l 134 (193)
+++.+.. ...... .......... +.......+|++++||| | .++|+..+..+...+..+
T Consensus 242 ~nl~~~~-----~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l 314 (365)
T 1lw7_A 242 HKIAFID-----TDFITT--QAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKL 314 (365)
T ss_dssp SSEEEES-----SCHHHH--HHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHH
T ss_pred CCEEEEe-----CCchHH--HHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHH
Confidence 2221100 000000 0000000000 00111235899999999 5 267888887777777665
Q ss_pred -hC-CCcEEEEecCCCCCCChhHHHHHhcC
Q 029421 135 -ES-NIPVLASIPAPKSGRDIPAVARLRNH 162 (193)
Q Consensus 135 -~~-g~tvl~~~~~~~~tHd~~~~~~~~d~ 162 (193)
++ |.+|+++ +|. ...+++++.
T Consensus 315 ~~~~~~~ilil------de~-~~~~r~~~~ 337 (365)
T 1lw7_A 315 LDKYKVPYIEI------ESP-SYLDRYNQV 337 (365)
T ss_dssp HHGGGCCCEEE------ECS-SHHHHHHHH
T ss_pred HHHcCCCEEEe------CCC-CHHHHHHHH
Confidence 44 8999999 764 355556654
No 109
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.50 E-value=1.6e-15 Score=118.36 Aligned_cols=41 Identities=15% Similarity=0.092 Sum_probs=35.2
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHh--hccc-----CCCCeEEeceE
Q 029421 3 AGAGKCFLVTGPPGVGKTTLIMRVLE--SLKA-----SNPSLKVQGFY 43 (193)
Q Consensus 3 i~~Ge~~~l~GpnGsGKSTLl~~i~g--l~~~-----~~G~i~~~g~~ 43 (193)
+++|++++|+||||||||||++.+++ ..+| ..|.+++++..
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 67899999999999999999999999 4555 56778888765
No 110
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.48 E-value=1.4e-14 Score=116.15 Aligned_cols=137 Identities=13% Similarity=0.103 Sum_probs=70.4
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecCCc-c-cccccccCCCC----
Q 029421 3 AGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDR-R-APLASINASSP---- 76 (193)
Q Consensus 3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~~-~-~~~~~~~~~~~---- 76 (193)
+.+|++++|+||||||||||++.+++.+. .|.+. .|.... ....+.|+..+.... . ...........
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~-~g~~~~----~~~~v~~~~~e~~~~~~~~r~~~~g~~~~~~~~ 99 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDL-LEVGEL----PTGPVIYLPAEDPPTAIHHRLHALGAHLSAEER 99 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCT-TCCCCC----CCCCEEEEESSSCHHHHHHHHHHHHTTSCHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCc-CCCccC----CCccEEEEECCCCHHHHHHHHHHHHhhcChhhh
Confidence 57899999999999999999999999765 45553 243221 122344543321100 0 00000000000
Q ss_pred ----CCCCC-Cccc--ceeeehhhhhhhcccccccCCCCCEEEEecC-C--Ccccccc---chHHHHHHHHh-C-CCcEE
Q 029421 77 ----ESYRW-PTVG--RYKVDVASFEAIALPELQVGADTDLFVIDEV-G--KMELFSS---SFFPAVLRILE-S-NIPVL 141 (193)
Q Consensus 77 ----~~~~~-~~~~--~~~~~~~~l~~~~l~~~~l~~~p~llllDEp-~--~LD~~~~---~~~~~ll~~l~-~-g~tvl 141 (193)
..... .... ........++.+ ..++.+|+++++||| + ++|+... ..+...++.+. + |+|||
T Consensus 100 ~~~~~~l~l~~~~~~~~~~ls~g~~~~i----~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi 175 (279)
T 1nlf_A 100 QAVADGLLIQPLIGSLPNIMAPEWFDGL----KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIV 175 (279)
T ss_dssp HHHHHHEEECCCTTSCCCTTSHHHHHHH----HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEE
T ss_pred hhccCceEEeecCCCCcccCCHHHHHHH----HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEE
Confidence 00000 0000 000000001111 124568999999999 5 7887654 45566666653 5 99999
Q ss_pred EEecCCCCCCChhHH
Q 029421 142 ASIPAPKSGRDIPAV 156 (193)
Q Consensus 142 ~~~~~~~~tHd~~~~ 156 (193)
++ +|+....
T Consensus 176 ~i------~H~~~~~ 184 (279)
T 1nlf_A 176 FL------HHASKGA 184 (279)
T ss_dssp EE------EEC----
T ss_pred EE------ecCCCcc
Confidence 99 7766543
No 111
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.48 E-value=1.2e-14 Score=124.52 Aligned_cols=61 Identities=20% Similarity=0.157 Sum_probs=50.6
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh------cc--CCceeeEEEeec
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI------RQ--GGQRVGFEVVTL 61 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~------~~--~~~~ig~~~q~~ 61 (193)
|++.+|++++|+|+||||||||+++|+|++++++|+|.+.|.+.... .. .+++++|++|..
T Consensus 288 l~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~ 356 (503)
T 2yhs_A 288 VEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHT 356 (503)
T ss_dssp CCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCST
T ss_pred eeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEeccc
Confidence 46789999999999999999999999999999999999987765321 11 245689999865
No 112
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.45 E-value=8.9e-14 Score=114.56 Aligned_cols=52 Identities=12% Similarity=0.163 Sum_probs=45.2
Q ss_pred cCCCCCEEEEecC-CCccccccchHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcC
Q 029421 104 VGADTDLFVIDEV-GKMELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNH 162 (193)
Q Consensus 104 l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~ 162 (193)
++.+|+++||||| ++||+..+..+.++++.+.. |.+||++ |||. .+..+||+
T Consensus 269 l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~------sH~~-~~~~~~d~ 322 (339)
T 3qkt_A 269 LAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILV------SHDE-ELKDAADH 322 (339)
T ss_dssp TTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEE------ESCG-GGGGGCSE
T ss_pred hcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEE------EChH-HHHHhCCE
Confidence 5679999999999 69999999999999988765 8899999 9995 46678887
No 113
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.43 E-value=6.7e-14 Score=113.64 Aligned_cols=130 Identities=15% Similarity=0.119 Sum_probs=56.6
Q ss_pred EEEEcCCCCcHHHHHHHHHhh-cccCCCCeEEeceEchhhccCCceeeEEEeecC--CcccccccccCCCCCCCCCCccc
Q 029421 9 FLVTGPPGVGKTTLIMRVLES-LKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD--DRRAPLASINASSPESYRWPTVG 85 (193)
Q Consensus 9 ~~l~GpnGsGKSTLl~~i~gl-~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~ 85 (193)
++|+||||||||||+++|+|. +.|++| +.++|.+..... ....+++++|... ..++.+++..+.... . ...
T Consensus 21 I~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~-~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~--~--~~e 94 (301)
T 2qnr_A 21 LMVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTV-QIEASTVEIEERGVKLRLTVVDTPGYGDAI--N--CRD 94 (301)
T ss_dssp EEEEEETTSSHHHHHHHHHC--------------------------CEEEEC---CCEEEEEEEEC--------------
T ss_pred EEEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcc-eEeeEEEEecCCCcccCcchhhhhhhhhhc--C--cHH
Confidence 599999999999999999998 889999 888887653221 1345678777532 123334432221100 0 000
Q ss_pred ceeeeh--------hhhhhhcccccccCCCCC---EEEEecC-C-CccccccchHHHHHHHHhC--CCcEEEEecCCCCC
Q 029421 86 RYKVDV--------ASFEAIALPELQVGADTD---LFVIDEV-G-KMELFSSSFFPAVLRILES--NIPVLASIPAPKSG 150 (193)
Q Consensus 86 ~~~~~~--------~~l~~~~l~~~~l~~~p~---llllDEp-~-~LD~~~~~~~~~ll~~l~~--g~tvl~~~~~~~~t 150 (193)
...... ..+..+.-.....+..++ ++++||| + +||+... ++++.+.. +.++|++ +
T Consensus 95 ~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~------K 164 (301)
T 2qnr_A 95 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIA------K 164 (301)
T ss_dssp -CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEEC------C
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEE------e
Confidence 000000 111111000001233444 9999999 5 5998762 55666554 6677777 8
Q ss_pred CChh
Q 029421 151 RDIP 154 (193)
Q Consensus 151 Hd~~ 154 (193)
||+.
T Consensus 165 ~Dl~ 168 (301)
T 2qnr_A 165 ADTL 168 (301)
T ss_dssp GGGS
T ss_pred CCCC
Confidence 8873
No 114
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.37 E-value=1.4e-13 Score=105.68 Aligned_cols=38 Identities=26% Similarity=0.176 Sum_probs=30.4
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEece
Q 029421 3 AGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGF 42 (193)
Q Consensus 3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~ 42 (193)
+++|++++|+||||||||||++.+++ ++..+.++++..
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~ 54 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTE 54 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESS
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECC
Confidence 78999999999999999999999999 443344455443
No 115
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.37 E-value=2.5e-15 Score=118.30 Aligned_cols=38 Identities=24% Similarity=0.302 Sum_probs=34.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHH---hhcccCCCCeEEece
Q 029421 5 AGKCFLVTGPPGVGKTTLIMRVL---ESLKASNPSLKVQGF 42 (193)
Q Consensus 5 ~Ge~~~l~GpnGsGKSTLl~~i~---gl~~~~~G~i~~~g~ 42 (193)
.+++++|+||||||||||+++|+ |+..|+.|++.++|.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~ 66 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENI 66 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHH
Confidence 46899999999999999999999 999999999887764
No 116
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.35 E-value=3.6e-13 Score=109.23 Aligned_cols=60 Identities=27% Similarity=0.222 Sum_probs=40.4
Q ss_pred cccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEE---eceEchhhcc--CCceeeEEEeec
Q 029421 2 AAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKV---QGFYTGEIRQ--GGQRVGFEVVTL 61 (193)
Q Consensus 2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~---~g~~~~~~~~--~~~~ig~~~q~~ 61 (193)
++..|++++|+||||||||||+++|+|+.+|++|+|.+ +|+++..... ..+.+||++|++
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p 229 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTP 229 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSC
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECc
Confidence 45679999999999999999999999999999999999 8887643221 123589999986
No 117
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.33 E-value=1.2e-14 Score=109.73 Aligned_cols=36 Identities=33% Similarity=0.532 Sum_probs=31.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEc
Q 029421 6 GKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYT 44 (193)
Q Consensus 6 Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~ 44 (193)
|++++|+||||||||||+++|++ +.+|.+.++|.+.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~ 37 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDII 37 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccch
Confidence 78999999999999999999997 5678899988654
No 118
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.32 E-value=1.3e-13 Score=115.91 Aligned_cols=125 Identities=18% Similarity=0.164 Sum_probs=67.4
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHH--HhhcccCCC-----CeEEeceEch---hhccCCceeeEEEeecCCccccccccc
Q 029421 3 AGAGKCFLVTGPPGVGKTTLIMRV--LESLKASNP-----SLKVQGFYTG---EIRQGGQRVGFEVVTLDDRRAPLASIN 72 (193)
Q Consensus 3 i~~Ge~~~l~GpnGsGKSTLl~~i--~gl~~~~~G-----~i~~~g~~~~---~~~~~~~~ig~~~q~~~~~~~~~~~~~ 72 (193)
|++|++++|+||||||||||++.+ .+..+++.| .+++++.... ......+++|+.++. .++++.
T Consensus 175 I~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~------vleni~ 248 (400)
T 3lda_A 175 VETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDD------ALNNVA 248 (400)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH------HHHTEE
T ss_pred cCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHh------HhhcEE
Confidence 678999999999999999999944 566766544 6788876531 112223345554331 112211
Q ss_pred CCCCCCCCCCcccceeeehhhhhhhcccccccCCCCCEEEEecC-CCcccccc------------chHHHHHHHHh-C-C
Q 029421 73 ASSPESYRWPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEV-GKMELFSS------------SFFPAVLRILE-S-N 137 (193)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp-~~LD~~~~------------~~~~~ll~~l~-~-g 137 (193)
+... ..... ..+.+.... ...-..+|+++++||| +.++.... ..+...++.+. + |
T Consensus 249 ~~~~-----~~~~~---~~~~l~~~~--~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~g 318 (400)
T 3lda_A 249 YARA-----YNADH---QLRLLDAAA--QMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFG 318 (400)
T ss_dssp EEEC-----CSHHH---HHHHHHHHH--HHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred Eecc-----CChHH---HHHHHHHHH--HHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcC
Confidence 1000 00000 001111100 0001247999999999 46665432 23445555554 4 9
Q ss_pred CcEEEE
Q 029421 138 IPVLAS 143 (193)
Q Consensus 138 ~tvl~~ 143 (193)
+|||++
T Consensus 319 itVIlv 324 (400)
T 3lda_A 319 VAVVVT 324 (400)
T ss_dssp CEEEEE
T ss_pred CEEEEE
Confidence 999999
No 119
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.32 E-value=2.4e-13 Score=114.83 Aligned_cols=135 Identities=13% Similarity=0.168 Sum_probs=72.6
Q ss_pred CcccCCCE--EEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh--hccCCceeeEEEeecC--CcccccccccCC
Q 029421 1 MAAGAGKC--FLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE--IRQGGQRVGFEVVTLD--DRRAPLASINAS 74 (193)
Q Consensus 1 l~i~~Ge~--~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~--~~~~~~~ig~~~q~~~--~~~~~~~~~~~~ 74 (193)
|++++|++ ++|+||||||||||+++|+|+. ++|.+... .....+.++|++|+.. +..++.++..+.
T Consensus 35 l~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g 106 (427)
T 2qag_B 35 KSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFG 106 (427)
T ss_dssp HSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCC
T ss_pred eEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhh
Confidence 47899999 9999999999999999999983 33333211 1112346889998752 234455554433
Q ss_pred CCCCC--CCCcccc--eeeehhhhhhh---------------------------ccccc------ccCCCCCEEEEecC-
Q 029421 75 SPESY--RWPTVGR--YKVDVASFEAI---------------------------ALPEL------QVGADTDLFVIDEV- 116 (193)
Q Consensus 75 ~~~~~--~~~~~~~--~~~~~~~l~~~---------------------------~l~~~------~l~~~p~llllDEp- 116 (193)
..... .|..... .....+.+... ++... .|..+++++++|+|
T Consensus 107 ~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~~~~~vI~Vi~Kt 186 (427)
T 2qag_B 107 DQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKA 186 (427)
T ss_dssp C-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTCSCSEEEEEESCG
T ss_pred hccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHhhCCCEEEEEcch
Confidence 21000 0000000 00000000000 01000 14578999999999
Q ss_pred CCccccccchHHHHHHH-HhC-CCcEEEE
Q 029421 117 GKMELFSSSFFPAVLRI-LES-NIPVLAS 143 (193)
Q Consensus 117 ~~LD~~~~~~~~~ll~~-l~~-g~tvl~~ 143 (193)
..|.+.....+...++. +.. |.+|+.+
T Consensus 187 D~Lt~~E~~~l~~~I~~~L~~~gi~I~~i 215 (427)
T 2qag_B 187 DAISKSELTKFKIKITSELVSNGVQIYQF 215 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHBTTBCCCCCC
T ss_pred hccchHHHHHHHHHHHHHHHHcCCcEEec
Confidence 48877666556655654 776 9999887
No 120
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.31 E-value=5.5e-13 Score=114.29 Aligned_cols=44 Identities=16% Similarity=0.188 Sum_probs=41.0
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEch
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTG 45 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~ 45 (193)
|+|++ ++++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 25 l~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 25 FDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEA 68 (483)
T ss_dssp EECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSC
T ss_pred EEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcc
Confidence 56888 999999999999999999999999999999999998753
No 121
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.31 E-value=1.1e-13 Score=113.17 Aligned_cols=39 Identities=31% Similarity=0.397 Sum_probs=36.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhhc--------ccCCCCeEEeceEch
Q 029421 7 KCFLVTGPPGVGKTTLIMRVLESL--------KASNPSLKVQGFYTG 45 (193)
Q Consensus 7 e~~~l~GpnGsGKSTLl~~i~gl~--------~~~~G~i~~~g~~~~ 45 (193)
++++|+|+||||||||++.|+|.. .|+.|+|.++|..+.
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~ 51 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIG 51 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEEC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHh
Confidence 589999999999999999999997 789999999998764
No 122
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.30 E-value=1.7e-12 Score=98.68 Aligned_cols=57 Identities=21% Similarity=0.369 Sum_probs=42.4
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc--cCCceeeEEEeec
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR--QGGQRVGFEVVTL 61 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~--~~~~~ig~~~q~~ 61 (193)
+++.+|++++|+||||||||||+++|+|+++ .+.+.+....... .....++|+||++
T Consensus 2 ~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (205)
T 3tr0_A 2 NAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDE 60 (205)
T ss_dssp ---CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCH
T ss_pred CcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccH
Confidence 4678999999999999999999999999964 5777776653222 2245678999865
No 123
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=99.29 E-value=1.9e-13 Score=106.70 Aligned_cols=58 Identities=14% Similarity=0.155 Sum_probs=39.9
Q ss_pred cccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh----------ccCCceeeEEEee
Q 029421 2 AAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI----------RQGGQRVGFEVVT 60 (193)
Q Consensus 2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~----------~~~~~~ig~~~q~ 60 (193)
++.+ ++++|+||||||||||+++|+|++.|++|.|.++|.++... ...+..++|++|+
T Consensus 24 ~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 24 DLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp CHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 3444 68899999999999999999999999999999999775211 1124678898875
No 124
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.29 E-value=9.1e-13 Score=108.54 Aligned_cols=61 Identities=25% Similarity=0.247 Sum_probs=51.1
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc------cCCceeeEEEeec
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR------QGGQRVGFEVVTL 61 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~------~~~~~ig~~~q~~ 61 (193)
|++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++.... ..+.++++++|++
T Consensus 50 ~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~ 116 (337)
T 2qm8_A 50 PQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDR 116 (337)
T ss_dssp GGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCT
T ss_pred cccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCc
Confidence 467899999999999999999999999999999999999998874322 2345678877764
No 125
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.29 E-value=6.8e-13 Score=99.93 Aligned_cols=57 Identities=18% Similarity=0.215 Sum_probs=43.6
Q ss_pred cccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEee
Q 029421 2 AAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVT 60 (193)
Q Consensus 2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~ 60 (193)
.+++|++++|+||||||||||+++|+|. ++.|.|.++|.+.......+..++|++|.
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~~~~~~~~~~~~ 61 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIKHGRIDPWLPQS 61 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCCSSCCCTTSSSH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhhcccccCCccch
Confidence 5789999999999999999999999997 67899999987653322223345666553
No 126
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.24 E-value=1.4e-13 Score=115.38 Aligned_cols=150 Identities=13% Similarity=0.077 Sum_probs=85.9
Q ss_pred cccCCCEEEEEcCCCCcHHHHHHHHHh------------hcccCCCCeEEeceEch---hhccCCceee---EEEeecC-
Q 029421 2 AAGAGKCFLVTGPPGVGKTTLIMRVLE------------SLKASNPSLKVQGFYTG---EIRQGGQRVG---FEVVTLD- 62 (193)
Q Consensus 2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~g------------l~~~~~G~i~~~g~~~~---~~~~~~~~ig---~~~q~~~- 62 (193)
++.+|..++|+|+||||||||+++|+| .+.|+.|.+.+.|.... ......+.++ ++.+.+.
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 467899999999999999999999999 56788899988874431 1111223333 2232221
Q ss_pred -CcccccccccCCCCCCC-CCCcccceeeehhhhhhhcccccccCCCC--CEEEEecC-CCccccccchHHHHHHHH-hC
Q 029421 63 -DRRAPLASINASSPESY-RWPTVGRYKVDVASFEAIALPELQVGADT--DLFVIDEV-GKMELFSSSFFPAVLRIL-ES 136 (193)
Q Consensus 63 -~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~l~~~p--~llllDEp-~~LD~~~~~~~~~ll~~l-~~ 136 (193)
...+..+.+ .. .+. .....+......+.++...+.+..-..+| ++.++||| .+.|+.........+..+ ..
T Consensus 96 ~~~~s~~e~L--~~-~fl~~ir~~d~il~Vvd~~~d~~i~~v~~~~dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~ 172 (392)
T 1ni3_A 96 TKGASTGVGL--GN-AFLSHVRAVDAIYQVVRAFDDAEIIHVEGDVDPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSR 172 (392)
T ss_dssp CCCCCSSSSS--CH-HHHHHHTTCSEEEEEEECCCTTCSSCCSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred ccCCcHHHHH--HH-HHHHHHHHHHHHHHHHhccccceeeeeccccCcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 000100000 00 000 00000000011111111111112223489 99999999 699999887777777776 55
Q ss_pred -CCcEEEEecCCCCCCChhHHHHHhcC
Q 029421 137 -NIPVLASIPAPKSGRDIPAVARLRNH 162 (193)
Q Consensus 137 -g~tvl~~~~~~~~tHd~~~~~~~~d~ 162 (193)
|.|+ + +|+...+..+|++
T Consensus 173 ~g~ti--~------sh~~~~~~~l~~~ 191 (392)
T 1ni3_A 173 GANTL--E------MKAKKEEQAIIEK 191 (392)
T ss_dssp SSCSS--S------HHHHHHHHHHHHH
T ss_pred cCCcc--c------cccHHHHHHHHHH
Confidence 7775 3 7888888888877
No 127
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=99.24 E-value=3.8e-12 Score=99.16 Aligned_cols=41 Identities=29% Similarity=0.412 Sum_probs=29.3
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHH-hhcccCCCCeEEeceE
Q 029421 3 AGAGKCFLVTGPPGVGKTTLIMRVL-ESLKASNPSLKVQGFY 43 (193)
Q Consensus 3 i~~Ge~~~l~GpnGsGKSTLl~~i~-gl~~~~~G~i~~~g~~ 43 (193)
+++|++++|+||||||||||+..++ +..+...+.+++++..
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE 61 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 6789999999999999999966554 4444433444455443
No 128
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.23 E-value=6.2e-12 Score=106.28 Aligned_cols=125 Identities=11% Similarity=0.084 Sum_probs=62.4
Q ss_pred EEEEcCCCCcHHHHHHHHHhhcccCCC--CeEEeceEchhhccCCceeeEEEeecC--CcccccccccCCCCCCCCCCcc
Q 029421 9 FLVTGPPGVGKTTLIMRVLESLKASNP--SLKVQGFYTGEIRQGGQRVGFEVVTLD--DRRAPLASINASSPESYRWPTV 84 (193)
Q Consensus 9 ~~l~GpnGsGKSTLl~~i~gl~~~~~G--~i~~~g~~~~~~~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~~~~~~~~~ 84 (193)
++|+||||||||||+++|+|...++.| .+.+++.. ......+++++|... ...+..++..+.... ...
T Consensus 34 I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~----t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~----~~~ 105 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKK----TVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAV----DNS 105 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC---------CCEEEEEECC------CEEEEEEECC-------------
T ss_pred EEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCcc----ceeeeeEEEEEecCCcccceeeeechhhhhhc----cch
Confidence 699999999999999999999876544 22222111 011234677776542 123444443322110 000
Q ss_pred cceeeeh----hhh-----hhhcccccccCCCCC---EEEEecC-C-CccccccchHHHHHHHHhCCCcEEEEecC
Q 029421 85 GRYKVDV----ASF-----EAIALPELQVGADTD---LFVIDEV-G-KMELFSSSFFPAVLRILESNIPVLASIPA 146 (193)
Q Consensus 85 ~~~~~~~----~~l-----~~~~l~~~~l~~~p~---llllDEp-~-~LD~~~~~~~~~ll~~l~~g~tvl~~~~~ 146 (193)
....... +.+ +++++. .+++.+|+ ++++||| + ++|+... .+++.+..+.++|+|++-
T Consensus 106 ~~~~~i~~~i~~~~~~~l~qr~~Ia-Ral~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~~~v~iIlVinK 176 (418)
T 2qag_C 106 NCWQPVIDYIDSKFEDYLNAESRVN-RRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLHEKVNIIPLIAK 176 (418)
T ss_dssp --CHHHHHHHHHHHHHHTTTSCC-C-CCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHTTTSEEEEEEES
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH-HHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHhccCcEEEEEEc
Confidence 0000000 011 111222 12678999 9999999 3 8987652 455556567888888543
No 129
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.22 E-value=4.6e-12 Score=102.83 Aligned_cols=59 Identities=20% Similarity=0.201 Sum_probs=43.1
Q ss_pred cccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEE---eceEchhhcc-CC-ceeeEEEeec
Q 029421 2 AAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKV---QGFYTGEIRQ-GG-QRVGFEVVTL 61 (193)
Q Consensus 2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~---~g~~~~~~~~-~~-~~ig~~~q~~ 61 (193)
++.+|++++|+||||||||||+++|+ +++|+.|+|.+ +|++...... .. +.+||++|++
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~p 224 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTP 224 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSC
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECc
Confidence 35679999999999999999999999 99999999999 8887643221 11 2589999987
No 130
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.22 E-value=1.4e-12 Score=106.08 Aligned_cols=60 Identities=20% Similarity=0.161 Sum_probs=34.5
Q ss_pred cccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEE---eceEchhhccCCc-eeeEEEeec
Q 029421 2 AAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKV---QGFYTGEIRQGGQ-RVGFEVVTL 61 (193)
Q Consensus 2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~---~g~~~~~~~~~~~-~ig~~~q~~ 61 (193)
++.+|++++|+||||||||||+++|+|+.+|+.|+|.+ .|+.........+ ..||++|++
T Consensus 169 ~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtp 232 (307)
T 1t9h_A 169 PHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTP 232 (307)
T ss_dssp GGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTEEEESSC
T ss_pred hhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCC
Confidence 56789999999999999999999999999999999998 7776532221111 268999876
No 131
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.13 E-value=1.8e-12 Score=98.69 Aligned_cols=39 Identities=10% Similarity=0.212 Sum_probs=28.7
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhc-----ccCCCCeEE
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESL-----KASNPSLKV 39 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~-----~~~~G~i~~ 39 (193)
|++.+|..++|+|+||||||||++.|+|.. .|+.|.+.+
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~ 64 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQL 64 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CC
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCcccee
Confidence 578899999999999999999999999988 788887765
No 132
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=99.13 E-value=1e-10 Score=94.66 Aligned_cols=129 Identities=13% Similarity=0.084 Sum_probs=71.7
Q ss_pred cCCCEEEEEcCCCCcHHHHHHHHHhhcccCCC-CeEEeceEchhhccCCceeeEEEeecCCcccccccccCCCCCCCCCC
Q 029421 4 GAGKCFLVTGPPGVGKTTLIMRVLESLKASNP-SLKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPLASINASSPESYRWP 82 (193)
Q Consensus 4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G-~i~~~g~~~~~~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~ 82 (193)
.+|++++++|||||||||+++.|++.+.+++| +|.+.+.+...... ...+.+ .......+... . .
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a-~eqL~~----------~~~~~gl~~~~--~-~ 168 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAA-VEQLKT----------YAELLQAPLEV--C-Y 168 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTH-HHHHHH----------HHTTTTCCCCB--C-S
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchH-HHHHHH----------HHHhcCCCeEe--c-C
Confidence 46899999999999999999999999998778 56554443311000 000000 00000000000 0 0
Q ss_pred cccceeeehhhhhhhcccccccCCCCCEEEEecCCCccccccchHHHHHHHHh---C-CCcEEEEecCCCCCCChhHHHH
Q 029421 83 TVGRYKVDVASFEAIALPELQVGADTDLFVIDEVGKMELFSSSFFPAVLRILE---S-NIPVLASIPAPKSGRDIPAVAR 158 (193)
Q Consensus 83 ~~~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp~~LD~~~~~~~~~ll~~l~---~-g~tvl~~~~~~~~tHd~~~~~~ 158 (193)
. ..+ + ...+. .+.+++++|+|.| |+|+.....+.++.+.+. . +..+++ .. +|+...+.+
T Consensus 169 ~------~~~-l-~~al~---~~~~~dlvIiDT~-G~~~~~~~~~~el~~~l~~~~~~~~~lVl--~a---t~~~~~~~~ 231 (296)
T 2px0_A 169 T------KEE-F-QQAKE---LFSEYDHVFVDTA-GRNFKDPQYIDELKETIPFESSIQSFLVL--SA---TAKYEDMKH 231 (296)
T ss_dssp S------HHH-H-HHHHH---HGGGSSEEEEECC-CCCTTSHHHHHHHHHHSCCCTTEEEEEEE--ET---TBCHHHHHH
T ss_pred C------HHH-H-HHHHH---HhcCCCEEEEeCC-CCChhhHHHHHHHHHHHhhcCCCeEEEEE--EC---CCCHHHHHH
Confidence 0 001 1 01111 1368999999944 667665555555555543 2 333444 11 888888888
Q ss_pred HhcCC
Q 029421 159 LRNHP 163 (193)
Q Consensus 159 ~~d~~ 163 (193)
++++.
T Consensus 232 ~~~~~ 236 (296)
T 2px0_A 232 IVKRF 236 (296)
T ss_dssp HTTTT
T ss_pred HHHHH
Confidence 88874
No 133
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.12 E-value=3.6e-11 Score=97.74 Aligned_cols=41 Identities=20% Similarity=0.285 Sum_probs=38.3
Q ss_pred cCCCEEEEEcCCCCcHHHHHHHHHhhcc--cCCCCeEE---eceEc
Q 029421 4 GAGKCFLVTGPPGVGKTTLIMRVLESLK--ASNPSLKV---QGFYT 44 (193)
Q Consensus 4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~~--~~~G~i~~---~g~~~ 44 (193)
.+|++++|+||||||||||+++|+|++. |++|+|.+ +|...
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~ 123 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLH 123 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccC
Confidence 7899999999999999999999999998 99999999 88664
No 134
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.12 E-value=2.6e-11 Score=98.41 Aligned_cols=38 Identities=24% Similarity=0.396 Sum_probs=34.5
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEec
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQG 41 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g 41 (193)
|+|++|++++|+||||||||||+++|+|++ +|+|...+
T Consensus 121 l~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~~~v 158 (305)
T 2v9p_A 121 KGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVLSFA 158 (305)
T ss_dssp HTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEECGG
T ss_pred EEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEEEEe
Confidence 478999999999999999999999999999 79986544
No 135
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.11 E-value=2.6e-11 Score=94.29 Aligned_cols=32 Identities=28% Similarity=0.532 Sum_probs=22.4
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHH-hhccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVL-ESLKA 32 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~-gl~~~ 32 (193)
|++++|++++|+||||||||||+++|+ |++++
T Consensus 22 l~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 22 MLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 678999999999999999999999999 99843
No 136
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.10 E-value=1.8e-11 Score=93.87 Aligned_cols=41 Identities=27% Similarity=0.436 Sum_probs=35.5
Q ss_pred cCCCEEEEEcCCCCcHHHHHHHHHhhcccC---CCCeEEeceEc
Q 029421 4 GAGKCFLVTGPPGVGKTTLIMRVLESLKAS---NPSLKVQGFYT 44 (193)
Q Consensus 4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~---~G~i~~~g~~~ 44 (193)
++|++++|+||||||||||+++|+|+++|+ .|.|.++|+..
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~ 63 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHL 63 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcC
Confidence 679999999999999999999999999864 56777777654
No 137
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=99.08 E-value=4.8e-11 Score=90.65 Aligned_cols=35 Identities=34% Similarity=0.552 Sum_probs=29.6
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCC
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNP 35 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G 35 (193)
+++.+|++++|+|||||||||++++|++.+.|+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 57899999999999999999999999999866555
No 138
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.07 E-value=5.1e-11 Score=90.78 Aligned_cols=29 Identities=24% Similarity=0.582 Sum_probs=24.2
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHhhcc
Q 029421 3 AGAGKCFLVTGPPGVGKTTLIMRVLESLK 31 (193)
Q Consensus 3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~ 31 (193)
+++|++++|+||||||||||+++|+|+++
T Consensus 1 m~~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 1 MAGPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp ----CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 35799999999999999999999999986
No 139
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=99.05 E-value=1.1e-10 Score=87.80 Aligned_cols=30 Identities=27% Similarity=0.568 Sum_probs=26.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhhcccCCC
Q 029421 6 GKCFLVTGPPGVGKTTLIMRVLESLKASNP 35 (193)
Q Consensus 6 Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G 35 (193)
|++++|+||||||||||+++|+|++++..|
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~ 30 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFG 30 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccce
Confidence 678999999999999999999999985433
No 140
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.04 E-value=9.3e-11 Score=97.09 Aligned_cols=56 Identities=18% Similarity=0.166 Sum_probs=37.9
Q ss_pred cCCCEEEEEcCCCCcHHHHHHHHHhhcc-cCCCCeEEe-ceEchhhccCCceeeEEEeec
Q 029421 4 GAGKCFLVTGPPGVGKTTLIMRVLESLK-ASNPSLKVQ-GFYTGEIRQGGQRVGFEVVTL 61 (193)
Q Consensus 4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~~-~~~G~i~~~-g~~~~~~~~~~~~ig~~~q~~ 61 (193)
.+|++++|+||||||||||+++|+|..+ |+.|+|.++ |.... ......+++++|..
T Consensus 213 ~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~--tt~~~~i~~v~q~~ 270 (358)
T 2rcn_A 213 LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH--TTTAARLYHFPHGG 270 (358)
T ss_dssp HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC---------------CCCEEEECTTSC
T ss_pred cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc--ceEEEEEEEECCCC
Confidence 3699999999999999999999999999 999999886 65432 12245677777653
No 141
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.01 E-value=1.9e-10 Score=97.26 Aligned_cols=41 Identities=29% Similarity=0.349 Sum_probs=38.3
Q ss_pred cCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEc
Q 029421 4 GAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYT 44 (193)
Q Consensus 4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~ 44 (193)
.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~i 205 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPI 205 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSC
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccc
Confidence 57899999999999999999999999999999999988765
No 142
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.01 E-value=1.1e-10 Score=101.07 Aligned_cols=42 Identities=17% Similarity=0.191 Sum_probs=39.1
Q ss_pred cccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceE
Q 029421 2 AAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFY 43 (193)
Q Consensus 2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~ 43 (193)
.+++|++++|+||||||||||+++|+|+++|++|.|.+.|..
T Consensus 256 ~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~ 297 (511)
T 2oap_1 256 AIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTR 297 (511)
T ss_dssp HHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSC
T ss_pred HHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcc
Confidence 467899999999999999999999999999999999998864
No 143
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.99 E-value=4.1e-11 Score=94.65 Aligned_cols=58 Identities=16% Similarity=0.166 Sum_probs=46.8
Q ss_pred cCCCEEEEEcCCCCcHHHHHHHHH---hhcccCCCCeE--------EeceEchh---hccCCceeeEEEeec
Q 029421 4 GAGKCFLVTGPPGVGKTTLIMRVL---ESLKASNPSLK--------VQGFYTGE---IRQGGQRVGFEVVTL 61 (193)
Q Consensus 4 ~~Ge~~~l~GpnGsGKSTLl~~i~---gl~~~~~G~i~--------~~g~~~~~---~~~~~~~ig~~~q~~ 61 (193)
.+|++++|+|||||||||++++|+ |+..+++|.+. .+|.+... .......+++++|..
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 96 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQ 96 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecC
Confidence 468999999999999999999999 99999999998 77776521 223346688888754
No 144
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=98.97 E-value=3.9e-11 Score=89.66 Aligned_cols=38 Identities=26% Similarity=0.345 Sum_probs=31.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhhcccC---CCCeEEeceEc
Q 029421 7 KCFLVTGPPGVGKTTLIMRVLESLKAS---NPSLKVQGFYT 44 (193)
Q Consensus 7 e~~~l~GpnGsGKSTLl~~i~gl~~~~---~G~i~~~g~~~ 44 (193)
++++|+|+||||||||+++|+|+++|+ .|.|.++|.++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i 43 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGD 43 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC-----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCccc
Confidence 589999999999999999999999998 89999999874
No 145
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.96 E-value=5.7e-10 Score=90.17 Aligned_cols=40 Identities=20% Similarity=0.190 Sum_probs=37.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEc
Q 029421 5 AGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYT 44 (193)
Q Consensus 5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~ 44 (193)
+|++++++|+||+||||+++.|++.+++..|+|.+.+.+.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~ 136 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADT 136 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCc
Confidence 7899999999999999999999999999999999988765
No 146
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.94 E-value=3e-10 Score=95.91 Aligned_cols=30 Identities=17% Similarity=0.181 Sum_probs=27.5
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
|+++.|+.++|+|+||||||||+++|+|..
T Consensus 152 lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~ 181 (416)
T 1udx_A 152 LELMLIADVGLVGYPNAGKSSLLAAMTRAH 181 (416)
T ss_dssp EEECCSCSEEEECCGGGCHHHHHHHHCSSC
T ss_pred eEEcCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 467889999999999999999999999884
No 147
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.94 E-value=7.4e-10 Score=84.18 Aligned_cols=54 Identities=17% Similarity=0.121 Sum_probs=39.0
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc-cCCceeeEEEee
Q 029421 3 AGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR-QGGQRVGFEVVT 60 (193)
Q Consensus 3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~-~~~~~ig~~~q~ 60 (193)
.++|++++|+|||||||||++++|++.+ |.+.++|.+..... ......|+++|+
T Consensus 26 ~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~~~~~~~~~g~~~~~ 80 (200)
T 4eun_A 26 GEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSPENIATMQRGIPLTD 80 (200)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCHHHHHHHHTTCCCCH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccHHHHHHHhcCCCCCC
Confidence 4679999999999999999999999987 88999886652111 111234666654
No 148
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.93 E-value=8.2e-10 Score=82.38 Aligned_cols=59 Identities=14% Similarity=-0.004 Sum_probs=40.9
Q ss_pred cccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceE--c-hhh-----ccCCceeeEEEeec
Q 029421 2 AAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFY--T-GEI-----RQGGQRVGFEVVTL 61 (193)
Q Consensus 2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~--~-~~~-----~~~~~~ig~~~q~~ 61 (193)
++.+| +++|+||||||||||+++|.+++.+..|...-.+.. . ... +.....+.+++|++
T Consensus 23 ~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~ 89 (182)
T 3kta_A 23 PFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNE 89 (182)
T ss_dssp ECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECT
T ss_pred ecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCC
Confidence 46677 999999999999999999999998877754322211 1 000 02345677888865
No 149
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.91 E-value=4.6e-10 Score=85.31 Aligned_cols=41 Identities=29% Similarity=0.326 Sum_probs=36.2
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCe--EEeceEc
Q 029421 3 AGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSL--KVQGFYT 44 (193)
Q Consensus 3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i--~~~g~~~ 44 (193)
.++|++++|+|||||||||++++|++.+. ..|.+ +++|.++
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNV 64 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchh
Confidence 46899999999999999999999999998 67888 8887654
No 150
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.89 E-value=2e-10 Score=86.53 Aligned_cols=37 Identities=27% Similarity=0.402 Sum_probs=31.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhccc-----------CCCCeEEeceEc
Q 029421 8 CFLVTGPPGVGKTTLIMRVLESLKA-----------SNPSLKVQGFYT 44 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl~~~-----------~~G~i~~~g~~~ 44 (193)
.++|+|+||||||||++.++|...+ +.|+|.++|...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~ 78 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 78 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEE
Confidence 5899999999999999999998765 457777877653
No 151
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.87 E-value=1.1e-09 Score=81.89 Aligned_cols=36 Identities=14% Similarity=0.228 Sum_probs=30.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhhccc-CCCCeEEe
Q 029421 5 AGKCFLVTGPPGVGKTTLIMRVLESLKA-SNPSLKVQ 40 (193)
Q Consensus 5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~~~-~~G~i~~~ 40 (193)
+|++++|+||||||||||+++|++.+++ ..|.|...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~t 40 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHT 40 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeecc
Confidence 6899999999999999999999999864 45666543
No 152
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.86 E-value=1.2e-09 Score=83.11 Aligned_cols=42 Identities=21% Similarity=0.210 Sum_probs=37.4
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEc
Q 029421 3 AGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYT 44 (193)
Q Consensus 3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~ 44 (193)
..+|++++|+|+||||||||+++|++.+++..|.+.+.+.+.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD 60 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence 467899999999999999999999999999889988876554
No 153
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.83 E-value=8.4e-10 Score=91.21 Aligned_cols=37 Identities=22% Similarity=0.359 Sum_probs=29.9
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEE
Q 029421 3 AGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKV 39 (193)
Q Consensus 3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~ 39 (193)
+++|+++.|.||||||||||+..++.......|.+.+
T Consensus 58 l~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vly 94 (349)
T 2zr9_A 58 LPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAF 94 (349)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEE
Confidence 5789999999999999999998888766555555443
No 154
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.83 E-value=1.5e-09 Score=84.42 Aligned_cols=39 Identities=18% Similarity=0.128 Sum_probs=35.2
Q ss_pred cccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEc
Q 029421 2 AAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYT 44 (193)
Q Consensus 2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~ 44 (193)
+.++|++++|.|+|||||||++++|+|. .|+|.+.+.+.
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~ 54 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPV 54 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCH
Confidence 4578999999999999999999999998 68899988764
No 155
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=98.82 E-value=1.2e-09 Score=79.71 Aligned_cols=52 Identities=12% Similarity=0.163 Sum_probs=45.6
Q ss_pred cCCCCCEEEEecC-CCccccccchHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcC
Q 029421 104 VGADTDLFVIDEV-GKMELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNH 162 (193)
Q Consensus 104 l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~ 162 (193)
++.+|++++|||| ++||+..+..+.+++..+.+ |.|||++ |||. .+..+||+
T Consensus 78 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiiv------sH~~-~~~~~~d~ 131 (148)
T 1f2t_B 78 LAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILV------SHDE-ELKDAADH 131 (148)
T ss_dssp HHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEE------ESCG-GGGGGCSE
T ss_pred HcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEE------EChH-HHHHhCCE
Confidence 4578999999999 69999999999999998865 8999999 9998 56678887
No 156
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.78 E-value=4.3e-09 Score=92.79 Aligned_cols=55 Identities=24% Similarity=0.239 Sum_probs=41.0
Q ss_pred cccCCCEEEEEcCCCCcHHHHHHHHHhhcccCC-CCeEEeceEchhhccCCceeeEEEe
Q 029421 2 AAGAGKCFLVTGPPGVGKTTLIMRVLESLKASN-PSLKVQGFYTGEIRQGGQRVGFEVV 59 (193)
Q Consensus 2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~-G~i~~~g~~~~~~~~~~~~ig~~~q 59 (193)
.+.+|+.++|+||||+|||||+++|++++++.. |.+.+++.... .....++++|+
T Consensus 56 ~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~---~~~p~i~~~p~ 111 (604)
T 3k1j_A 56 AANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPED---ENMPRIKTVPA 111 (604)
T ss_dssp HHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTC---TTSCEEEEEET
T ss_pred cccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccc---ccCCcEEEEec
Confidence 467899999999999999999999999998877 66666654332 12334555543
No 157
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.75 E-value=6.4e-09 Score=84.44 Aligned_cols=42 Identities=21% Similarity=0.205 Sum_probs=38.4
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEc
Q 029421 3 AGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYT 44 (193)
Q Consensus 3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~ 44 (193)
..+|++++++|||||||||+++.|++.++++.|+|.+.+.+.
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~ 142 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADT 142 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECT
T ss_pred CCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccc
Confidence 467899999999999999999999999999989999887765
No 158
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.75 E-value=6.8e-09 Score=90.45 Aligned_cols=37 Identities=35% Similarity=0.609 Sum_probs=32.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEec
Q 029421 5 AGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQG 41 (193)
Q Consensus 5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g 41 (193)
+|++++|+||||+|||||+++|++.+.+..|.+.+.|
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~ 143 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGG 143 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecc
Confidence 6899999999999999999999999987777766655
No 159
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.74 E-value=4.3e-09 Score=91.76 Aligned_cols=43 Identities=23% Similarity=0.298 Sum_probs=37.6
Q ss_pred cccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCC-CeE-EeceEc
Q 029421 2 AAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNP-SLK-VQGFYT 44 (193)
Q Consensus 2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G-~i~-~~g~~~ 44 (193)
.+.+|++++|+|+||||||||+++|++.+.|++| ++. ++|...
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 4678999999999999999999999999999886 685 777544
No 160
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.73 E-value=8.5e-09 Score=76.31 Aligned_cols=37 Identities=19% Similarity=0.345 Sum_probs=32.3
Q ss_pred cCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEc
Q 029421 4 GAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYT 44 (193)
Q Consensus 4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~ 44 (193)
.+|++++|+|||||||||++++|++.+ |.+.+++...
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~ 42 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFL 42 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccc
Confidence 468999999999999999999999975 7888887554
No 161
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.73 E-value=3e-08 Score=81.44 Aligned_cols=75 Identities=17% Similarity=0.295 Sum_probs=44.8
Q ss_pred CCCEEEEecCCCcc-ccccchHHHHHHHH---hC-CCcEEEEecCCCCCCChhHHH----HHhcCCCcEEEEeCCCChhH
Q 029421 107 DTDLFVIDEVGKME-LFSSSFFPAVLRIL---ES-NIPVLASIPAPKSGRDIPAVA----RLRNHPGATIFTLSPGNRDS 177 (193)
Q Consensus 107 ~p~llllDEp~~LD-~~~~~~~~~ll~~l---~~-g~tvl~~~~~~~~tHd~~~~~----~~~d~~~~~~~~~~~~~~~~ 177 (193)
.|.++++||+..+. ......+..+++.+ .. +.++|++ +|+..... .+..+.....+.+.+.+.++
T Consensus 128 ~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~------~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~ 201 (386)
T 2qby_A 128 SQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGI------TNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEE 201 (386)
T ss_dssp SCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEE------ESCGGGGGGCTTHHHHTTTTEEEEECCCCHHH
T ss_pred CeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEE------ECCCChHhhhCHHHhccCCCeeEEeCCCCHHH
Confidence 48899999995433 32345566666666 33 6788888 77664322 23334444566777777766
Q ss_pred HHHHHHHHHH
Q 029421 178 LKDNIYYQLT 187 (193)
Q Consensus 178 l~~~~~~~~~ 187 (193)
+.+-+...+.
T Consensus 202 ~~~il~~~~~ 211 (386)
T 2qby_A 202 LEDILTKRAQ 211 (386)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6655554443
No 162
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.72 E-value=1.3e-08 Score=83.93 Aligned_cols=29 Identities=28% Similarity=0.400 Sum_probs=25.7
Q ss_pred CCC--EEEEEcCCCCcHHHHHHHHHhhcccC
Q 029421 5 AGK--CFLVTGPPGVGKTTLIMRVLESLKAS 33 (193)
Q Consensus 5 ~Ge--~~~l~GpnGsGKSTLl~~i~gl~~~~ 33 (193)
.+. .+.|.||+|+|||||++.+++.+.+.
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~ 71 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYKDK 71 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHTTS
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHhhh
Confidence 346 89999999999999999999988765
No 163
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.69 E-value=1e-08 Score=78.47 Aligned_cols=29 Identities=31% Similarity=0.540 Sum_probs=27.2
Q ss_pred cCCCEEEEEcCCCCcHHHHHHHHHhhccc
Q 029421 4 GAGKCFLVTGPPGVGKTTLIMRVLESLKA 32 (193)
Q Consensus 4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~ 32 (193)
++|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 47999999999999999999999999876
No 164
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.69 E-value=6.4e-09 Score=86.05 Aligned_cols=41 Identities=17% Similarity=0.181 Sum_probs=35.0
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCe-EEeceE
Q 029421 3 AGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSL-KVQGFY 43 (193)
Q Consensus 3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i-~~~g~~ 43 (193)
+++|+++.|.||||||||||+..++....+..|.+ ++++..
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~ 99 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEH 99 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence 57899999999999999999999999988877776 555543
No 165
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.69 E-value=1.1e-08 Score=77.85 Aligned_cols=29 Identities=21% Similarity=0.371 Sum_probs=26.5
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHhhcc
Q 029421 3 AGAGKCFLVTGPPGVGKTTLIMRVLESLK 31 (193)
Q Consensus 3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~ 31 (193)
..+|++++|+||||||||||++.|++.++
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34799999999999999999999999875
No 166
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.68 E-value=7.5e-09 Score=82.66 Aligned_cols=55 Identities=27% Similarity=0.326 Sum_probs=39.5
Q ss_pred cccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEee
Q 029421 2 AAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVT 60 (193)
Q Consensus 2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~ 60 (193)
++++| ++|+||||||||||+++|+|.+.+ |.+.++|.++... ....+.++++||.
T Consensus 42 ~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~ 98 (274)
T 2x8a_A 42 VTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQR 98 (274)
T ss_dssp CCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHH
T ss_pred CCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHH
Confidence 45566 999999999999999999999876 6788888654211 1112345566654
No 167
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.66 E-value=1.2e-07 Score=72.84 Aligned_cols=28 Identities=21% Similarity=0.292 Sum_probs=24.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhhccc
Q 029421 5 AGKCFLVTGPPGVGKTTLIMRVLESLKA 32 (193)
Q Consensus 5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~~~ 32 (193)
.+..+.|.||+|+|||||++.++..+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~ 78 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANE 78 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5778999999999999999999987653
No 168
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.65 E-value=2.4e-09 Score=87.74 Aligned_cols=54 Identities=28% Similarity=0.316 Sum_probs=41.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhhc----ccCCCCeEEeceEchhh--ccCCceeeEEEee
Q 029421 7 KCFLVTGPPGVGKTTLIMRVLESL----KASNPSLKVQGFYTGEI--RQGGQRVGFEVVT 60 (193)
Q Consensus 7 e~~~l~GpnGsGKSTLl~~i~gl~----~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~ 60 (193)
++++|+||||+|||||+++|+|.+ .+++|.+..++.++... ......++|+++.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE~ 111 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEI 111 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEETG
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcch
Confidence 789999999999999999999998 77888887766554321 1224567888764
No 169
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.65 E-value=1.8e-08 Score=82.24 Aligned_cols=44 Identities=18% Similarity=0.234 Sum_probs=39.9
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYT 44 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~ 44 (193)
|++.+|++++++|+||+||||++..|++.+.+..|+|.+.+.+.
T Consensus 100 ~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~ 143 (320)
T 1zu4_A 100 FKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADT 143 (320)
T ss_dssp CCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 34678999999999999999999999999999999999988775
No 170
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.62 E-value=2.3e-08 Score=81.66 Aligned_cols=33 Identities=24% Similarity=0.325 Sum_probs=28.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcc--cCCCCeEEe
Q 029421 8 CFLVTGPPGVGKTTLIMRVLESLK--ASNPSLKVQ 40 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl~~--~~~G~i~~~ 40 (193)
++||+||||||||||+++|++++. |++|.+.+-
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i 128 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVI 128 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEE
Confidence 899999999999999999999987 567775543
No 171
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.61 E-value=4.2e-09 Score=81.05 Aligned_cols=57 Identities=18% Similarity=0.247 Sum_probs=40.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhhc---ccCCCCeEE--------eceEch---hhccCCceeeEEEeec
Q 029421 5 AGKCFLVTGPPGVGKTTLIMRVLESL---KASNPSLKV--------QGFYTG---EIRQGGQRVGFEVVTL 61 (193)
Q Consensus 5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~---~~~~G~i~~--------~g~~~~---~~~~~~~~ig~~~q~~ 61 (193)
.+.+++|+|||||||||+.++|++.+ .++.|.+.. .|.++. ......+.+++++|..
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 74 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVST 74 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeecc
Confidence 35789999999999999999999887 677777765 454332 1112234577777754
No 172
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.59 E-value=9.5e-08 Score=78.16 Aligned_cols=33 Identities=36% Similarity=0.625 Sum_probs=28.1
Q ss_pred ccCCCE--EEEEcCCCCcHHHHHHHHHhhcccCCC
Q 029421 3 AGAGKC--FLVTGPPGVGKTTLIMRVLESLKASNP 35 (193)
Q Consensus 3 i~~Ge~--~~l~GpnGsGKSTLl~~i~gl~~~~~G 35 (193)
+..|++ +.+.||+|+||||+++++++.+.+..+
T Consensus 41 i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~ 75 (340)
T 1sxj_C 41 VDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY 75 (340)
T ss_dssp HHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH
T ss_pred HhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc
Confidence 456777 999999999999999999999866543
No 173
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.57 E-value=3.3e-08 Score=72.79 Aligned_cols=33 Identities=21% Similarity=0.355 Sum_probs=28.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEec
Q 029421 5 AGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQG 41 (193)
Q Consensus 5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g 41 (193)
.|++++|+|||||||||++++|++.+. ...+++
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~----~~~id~ 35 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN----MEFYDS 35 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT----CEEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC----CCEEec
Confidence 578999999999999999999999864 355654
No 174
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=98.55 E-value=3.5e-08 Score=83.45 Aligned_cols=50 Identities=14% Similarity=0.254 Sum_probs=42.9
Q ss_pred CCCCEEEEecC-CCccccccchHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcC
Q 029421 106 ADTDLFVIDEV-GKMELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNH 162 (193)
Q Consensus 106 ~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~ 162 (193)
.+|+++||||| ++||+..+..+.++++.+.. |.++|++ ||+.. ....||+
T Consensus 354 ~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~------th~~~-~~~~~d~ 405 (430)
T 1w1w_A 354 QPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVI------SLKNT-MFEKSDA 405 (430)
T ss_dssp SCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEE------CSCHH-HHTTCSE
T ss_pred CCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEE------ECCHH-HHHhCCE
Confidence 58999999999 79999999999999988765 8899999 99954 4556776
No 175
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.55 E-value=7.4e-08 Score=81.59 Aligned_cols=40 Identities=18% Similarity=0.102 Sum_probs=35.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEc
Q 029421 5 AGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYT 44 (193)
Q Consensus 5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~ 44 (193)
++.+++++|||||||||++..|++.+.+..+++.+-+-+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV 135 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 4789999999999999999999999999888887766554
No 176
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.53 E-value=5.7e-08 Score=76.17 Aligned_cols=37 Identities=38% Similarity=0.600 Sum_probs=30.2
Q ss_pred cccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEece
Q 029421 2 AAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGF 42 (193)
Q Consensus 2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~ 42 (193)
++++| ++|+||||||||||+++|++... .|.+.++|.
T Consensus 47 ~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~ 83 (254)
T 1ixz_A 47 RIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGS 83 (254)
T ss_dssp CCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHH
T ss_pred CCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHH
Confidence 45566 89999999999999999999875 566666654
No 177
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.53 E-value=1.1e-07 Score=80.76 Aligned_cols=73 Identities=15% Similarity=0.128 Sum_probs=42.7
Q ss_pred CCCEEEEecCCCccc--cccchHHHHHHHHhC-CCcEEEEecCCCCCCChhH-----HHHHhcCC-CcEEEEeCCCChhH
Q 029421 107 DTDLFVIDEVGKMEL--FSSSFFPAVLRILES-NIPVLASIPAPKSGRDIPA-----VARLRNHP-GATIFTLSPGNRDS 177 (193)
Q Consensus 107 ~p~llllDEp~~LD~--~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~-----~~~~~d~~-~~~~~~~~~~~~~~ 177 (193)
++++|++||+..+.. ..+..+..++..+.+ |+.+|++ ||+... ..++..|. .+.++.+.+++.++
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIit------t~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~ 267 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVIC------SDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEET 267 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEE------ESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHH
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEE------ECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHH
Confidence 789999999943332 445667777777665 8899998 655211 12233332 13344566666655
Q ss_pred HHHHHHHH
Q 029421 178 LKDNIYYQ 185 (193)
Q Consensus 178 l~~~~~~~ 185 (193)
..+-+...
T Consensus 268 r~~iL~~~ 275 (440)
T 2z4s_A 268 RKSIARKM 275 (440)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 54444433
No 178
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.53 E-value=5.6e-08 Score=80.19 Aligned_cols=41 Identities=27% Similarity=0.329 Sum_probs=36.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEch
Q 029421 5 AGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTG 45 (193)
Q Consensus 5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~ 45 (193)
++.+++|+|++|||||||++.|+|.+.++.|+|.+.+.++.
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~ 113 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPS 113 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCC
Confidence 37899999999999999999999999999999999887653
No 179
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.52 E-value=4.6e-08 Score=83.37 Aligned_cols=40 Identities=15% Similarity=0.359 Sum_probs=33.5
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCC-CeEEece
Q 029421 3 AGAGKCFLVTGPPGVGKTTLIMRVLESLKASNP-SLKVQGF 42 (193)
Q Consensus 3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G-~i~~~g~ 42 (193)
+.+|+++.|.|++|+|||||+..+++...+..| .+.+.+.
T Consensus 200 l~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 200 FQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp BCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 679999999999999999999999998876545 5665543
No 180
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.52 E-value=5.5e-08 Score=72.25 Aligned_cols=38 Identities=32% Similarity=0.360 Sum_probs=31.1
Q ss_pred cCCCEEEEEcCCCCcHHHHHHHHHhhcccCCC--CeEEece
Q 029421 4 GAGKCFLVTGPPGVGKTTLIMRVLESLKASNP--SLKVQGF 42 (193)
Q Consensus 4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G--~i~~~g~ 42 (193)
.+|++++|+|++||||||+.+.|++.+++ .| .+.+++.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~ 42 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGD 42 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECCh
Confidence 46899999999999999999999999877 46 4455553
No 181
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.52 E-value=2.7e-08 Score=88.61 Aligned_cols=43 Identities=26% Similarity=0.252 Sum_probs=34.2
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhccc--CCCCeEEeceEc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKA--SNPSLKVQGFYT 44 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~--~~G~i~~~g~~~ 44 (193)
+++++|..++|+|++|+|||||++.|++...+ ..|+| .+|...
T Consensus 4 ~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~ 48 (665)
T 2dy1_A 4 EGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTT 48 (665)
T ss_dssp --CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCS
T ss_pred CccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCccc
Confidence 35678999999999999999999999988664 67887 555443
No 182
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=98.51 E-value=7.9e-08 Score=79.62 Aligned_cols=45 Identities=2% Similarity=0.150 Sum_probs=37.1
Q ss_pred CCCCEEEEecC-CCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcC
Q 029421 106 ADTDLFVIDEV-GKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNH 162 (193)
Q Consensus 106 ~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~ 162 (193)
.+|+++||||| ++||+..+..+.+++..+. .|+|++ ||. +. .|++
T Consensus 291 ~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~--qt~i~~------th~-~~---~~~~ 336 (359)
T 2o5v_A 291 GEDPVLLLDDFTAELDPHRRQYLLDLAASVP--QAIVTG------TEL-AP---GAAL 336 (359)
T ss_dssp SSCCEEEECCGGGCCCHHHHHHHHHHHHHSS--EEEEEE------SSC-CT---TCSE
T ss_pred CCCCEEEEeCccccCCHHHHHHHHHHHHhcC--cEEEEE------Eec-cc---cCCE
Confidence 79999999999 6999999988888887764 688888 884 33 5665
No 183
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.50 E-value=7.4e-08 Score=76.63 Aligned_cols=38 Identities=37% Similarity=0.559 Sum_probs=30.8
Q ss_pred cccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceE
Q 029421 2 AAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFY 43 (193)
Q Consensus 2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~ 43 (193)
++++| ++|+||||||||||+++|++.+. .|.+.+++.+
T Consensus 71 ~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~ 108 (278)
T 1iy2_A 71 RIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSD 108 (278)
T ss_dssp CCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHH
T ss_pred CCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHH
Confidence 45566 89999999999999999999875 5667666543
No 184
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.47 E-value=1e-07 Score=82.28 Aligned_cols=43 Identities=16% Similarity=0.165 Sum_probs=35.9
Q ss_pred cccCCCEEEEEcCCCCcHHHHHHHHHh--hcccCCCCeEEeceEc
Q 029421 2 AAGAGKCFLVTGPPGVGKTTLIMRVLE--SLKASNPSLKVQGFYT 44 (193)
Q Consensus 2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~g--l~~~~~G~i~~~g~~~ 44 (193)
++.++.+++|.|++||||||+++.|.. +.+++.|++.+.+.+.
T Consensus 163 dL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDp 207 (512)
T 2ius_A 163 DLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDP 207 (512)
T ss_dssp EGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECC
T ss_pred EcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECC
Confidence 567789999999999999999999876 4566778888877664
No 185
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.47 E-value=1.2e-07 Score=86.93 Aligned_cols=53 Identities=17% Similarity=0.245 Sum_probs=46.4
Q ss_pred cCCCCC--EEEEecC-CCccccccchHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 104 VGADTD--LFVIDEV-GKMELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 104 l~~~p~--llllDEp-~~LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
|+.+|+ ++||||| ++||+.....+.++++.+++ |.|||+| |||++.+. .||++
T Consensus 479 L~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivV------tHd~~~~~-~aD~i 535 (916)
T 3pih_A 479 IGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVV------EHDEEVIR-NADHI 535 (916)
T ss_dssp HHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEE------CCCHHHHH-TCSEE
T ss_pred HhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEE------eCCHHHHH-hCCEE
Confidence 666666 9999999 69999999999999999987 9999999 99998775 48883
No 186
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.46 E-value=6.5e-08 Score=72.89 Aligned_cols=36 Identities=28% Similarity=0.435 Sum_probs=28.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcc-----cC------CCCeEEeceE
Q 029421 8 CFLVTGPPGVGKTTLIMRVLESLK-----AS------NPSLKVQGFY 43 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl~~-----~~------~G~i~~~g~~ 43 (193)
.++|+|+||||||||++.++|... |+ .|.+.++|..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~ 53 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKT 53 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEE
Confidence 489999999999999999999843 33 3456666643
No 187
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.46 E-value=9.6e-08 Score=72.30 Aligned_cols=30 Identities=33% Similarity=0.320 Sum_probs=25.0
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
|++.+|++++|+|++||||||+.+.|++.+
T Consensus 20 ~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 20 FQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred EecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 567899999999999999999999999876
No 188
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=98.43 E-value=5.3e-08 Score=74.39 Aligned_cols=40 Identities=23% Similarity=0.365 Sum_probs=34.4
Q ss_pred cccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCC--CeEEec
Q 029421 2 AAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNP--SLKVQG 41 (193)
Q Consensus 2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G--~i~~~g 41 (193)
.+.+|.+++|+|++||||||+.+.|++.+.|+.| .+.+++
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~ 62 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDG 62 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECC
Confidence 4678999999999999999999999999987777 566654
No 189
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.43 E-value=1.4e-07 Score=77.58 Aligned_cols=43 Identities=26% Similarity=0.248 Sum_probs=38.1
Q ss_pred cccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEc
Q 029421 2 AAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYT 44 (193)
Q Consensus 2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~ 44 (193)
.+.+|.+++|+|+||+|||||++.|++.+.+..+++.+-+.+.
T Consensus 52 ~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~ 94 (341)
T 2p67_A 52 YCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDP 94 (341)
T ss_dssp GCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred ccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecC
Confidence 4678999999999999999999999999999888888876654
No 190
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.43 E-value=1.2e-07 Score=72.12 Aligned_cols=30 Identities=23% Similarity=0.240 Sum_probs=27.2
Q ss_pred cccCCCEEEEEcCCCCcHHHHHHHHHhhcc
Q 029421 2 AAGAGKCFLVTGPPGVGKTTLIMRVLESLK 31 (193)
Q Consensus 2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~ 31 (193)
++.+|.+++|+|++||||||+++.|++.++
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 467899999999999999999999999753
No 191
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.41 E-value=2.4e-07 Score=84.92 Aligned_cols=52 Identities=15% Similarity=0.206 Sum_probs=46.4
Q ss_pred cCCC--CCEEEEecC-CCccccccchHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcC
Q 029421 104 VGAD--TDLFVIDEV-GKMELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNH 162 (193)
Q Consensus 104 l~~~--p~llllDEp-~~LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~ 162 (193)
|..+ |+++||||| ++||+.....+.++++.+++ |.|||+| +||++.+. .||+
T Consensus 519 L~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvV------eHdl~~i~-~ADr 574 (972)
T 2r6f_A 519 IGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVV------EHDEDTML-AADY 574 (972)
T ss_dssp HTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEE------CCCHHHHH-SCSE
T ss_pred HhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEE------ecCHHHHH-hCCE
Confidence 6666 599999999 59999999999999999987 9999999 99998765 6888
No 192
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.40 E-value=1.4e-07 Score=78.67 Aligned_cols=35 Identities=29% Similarity=0.310 Sum_probs=30.5
Q ss_pred cccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEE
Q 029421 2 AAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKV 39 (193)
Q Consensus 2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~ 39 (193)
.+++|++++|+||||||||||+++|+|.. +|.+..
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~ 199 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALN 199 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEEC
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEE
Confidence 57899999999999999999999999974 566544
No 193
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.40 E-value=7.4e-07 Score=73.54 Aligned_cols=80 Identities=15% Similarity=0.180 Sum_probs=44.6
Q ss_pred CCCCCEEEEe-cC-CCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChhH------HHHHhcCCCcEEEEeCC---C
Q 029421 105 GADTDLFVID-EV-GKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPA------VARLRNHPGATIFTLSP---G 173 (193)
Q Consensus 105 ~~~p~llllD-Ep-~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~------~~~~~d~~~~~~~~~~~---~ 173 (193)
..++-++++| ++ .++|......+...+.....+.++|++.- =||+.. +.+++...+..++.++. .
T Consensus 246 ~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~N----K~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g~ 321 (357)
T 2e87_A 246 LGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVIN----KIDVADEENIKRLEKFVKEKGLNPIKISALKGT 321 (357)
T ss_dssp TCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEEC----CTTTCCHHHHHHHHHHHHHTTCCCEECBTTTTB
T ss_pred cCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEE----CcccCChHHHHHHHHHHHhcCCCeEEEeCCCCc
Confidence 3567789999 77 57887765544444444333788888820 166532 22333333334444442 2
Q ss_pred ChhHHHHHHHHHHHH
Q 029421 174 NRDSLKDNIYYQLTD 188 (193)
Q Consensus 174 ~~~~l~~~~~~~~~~ 188 (193)
+.+++.+.+.+.+..
T Consensus 322 gi~~l~~~i~~~l~~ 336 (357)
T 2e87_A 322 GIDLVKEEIIKTLRP 336 (357)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 456777777665543
No 194
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.37 E-value=1.1e-06 Score=66.91 Aligned_cols=26 Identities=31% Similarity=0.603 Sum_probs=22.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhhccc
Q 029421 7 KCFLVTGPPGVGKTTLIMRVLESLKA 32 (193)
Q Consensus 7 e~~~l~GpnGsGKSTLl~~i~gl~~~ 32 (193)
..+.|.||+|+|||||++.++..+..
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 37899999999999999999987654
No 195
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=98.36 E-value=3.4e-07 Score=68.33 Aligned_cols=37 Identities=32% Similarity=0.493 Sum_probs=32.3
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEE
Q 029421 3 AGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKV 39 (193)
Q Consensus 3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~ 39 (193)
..+|.+++|+|++||||||+.+.|+..+.+..+.+.+
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~ 46 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEV 46 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 4679999999999999999999999999887776643
No 196
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.35 E-value=6.7e-07 Score=76.63 Aligned_cols=23 Identities=43% Similarity=0.660 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 029421 8 CFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
-+.|+||+|+|||||++++++..
T Consensus 51 gvLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHc
Confidence 38899999999999999999864
No 197
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.35 E-value=2.6e-07 Score=84.93 Aligned_cols=53 Identities=15% Similarity=0.176 Sum_probs=46.6
Q ss_pred cCCC--CCEEEEecC-CCccccccchHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 104 VGAD--TDLFVIDEV-GKMELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 104 l~~~--p~llllDEp-~~LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
|..+ |+++||||| ++||+.....+.++++.+++ |.|||+| +||++.+. .||++
T Consensus 536 L~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvV------eHdl~~i~-~ADrI 592 (993)
T 2ygr_A 536 IGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVV------EHDEDTIE-HADWI 592 (993)
T ss_dssp HTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEE------CCCHHHHH-TCSEE
T ss_pred HhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEE------CCCHHHHH-hCCEE
Confidence 6676 589999999 59999999999999999876 9999999 99998765 68883
No 198
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.34 E-value=5.4e-07 Score=73.03 Aligned_cols=28 Identities=25% Similarity=0.300 Sum_probs=24.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhhcccC
Q 029421 6 GKCFLVTGPPGVGKTTLIMRVLESLKAS 33 (193)
Q Consensus 6 Ge~~~l~GpnGsGKSTLl~~i~gl~~~~ 33 (193)
+..+.|.||+|+|||||++.+++.+...
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~ 64 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKR 64 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 4679999999999999999999887554
No 199
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.31 E-value=4e-07 Score=68.98 Aligned_cols=30 Identities=27% Similarity=0.135 Sum_probs=25.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEece
Q 029421 8 CFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGF 42 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~ 42 (193)
+++|+|||||||||+.++|+++ |...+++-
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~d 33 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDAD 33 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcccchH
Confidence 6899999999999999999984 66666553
No 200
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.29 E-value=1.9e-07 Score=73.66 Aligned_cols=30 Identities=30% Similarity=0.366 Sum_probs=26.9
Q ss_pred CcccC---CCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421 1 MAAGA---GKCFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 1 l~i~~---Ge~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
|+|.+ |++++|+|++||||||+.++|++.+
T Consensus 40 ~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 40 EEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp HTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred hhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 35667 9999999999999999999999965
No 201
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.28 E-value=8.4e-07 Score=80.70 Aligned_cols=52 Identities=13% Similarity=0.232 Sum_probs=46.5
Q ss_pred cCCCC--CEEEEecC-CCccccccchHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcC
Q 029421 104 VGADT--DLFVIDEV-GKMELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNH 162 (193)
Q Consensus 104 l~~~p--~llllDEp-~~LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~ 162 (193)
|+.+| .++||||| ++||+.....+.++++.+++ |.|||+| +||++.+ ..||+
T Consensus 394 L~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvV------eHdl~~l-~~aD~ 449 (842)
T 2vf7_A 394 LYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVV------EHDLDVI-RRADW 449 (842)
T ss_dssp TTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEE------CCCHHHH-TTCSE
T ss_pred HhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEE------cCCHHHH-HhCCE
Confidence 77888 59999999 69999999999999999987 9999999 9999865 46887
No 202
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=98.23 E-value=5.1e-07 Score=65.54 Aligned_cols=24 Identities=33% Similarity=0.527 Sum_probs=21.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhhc
Q 029421 7 KCFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 7 e~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
.+.+|+|||||||||++.+|.-.+
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 389999999999999999997544
No 203
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=98.23 E-value=3.5e-07 Score=79.11 Aligned_cols=53 Identities=19% Similarity=0.070 Sum_probs=46.3
Q ss_pred cCCCC--CEEEEecC-CCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 104 VGADT--DLFVIDEV-GKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 104 l~~~p--~llllDEp-~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
++.+| ++|||||| +|||+.++..+.++++.+.+|.+||++ ||+++.+. +||++
T Consensus 412 l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~i------tH~~~~~~-~~d~~ 467 (517)
T 4ad8_A 412 TVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVV------THLAQIAA-RAHHH 467 (517)
T ss_dssp HHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEE------CCCHHHHH-HSSEE
T ss_pred HHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEE------ecCHHHHH-hCCEE
Confidence 55788 99999999 699999999999999988778999999 99987664 68873
No 204
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=98.22 E-value=7.6e-07 Score=67.52 Aligned_cols=29 Identities=41% Similarity=0.598 Sum_probs=26.3
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHhhcc
Q 029421 3 AGAGKCFLVTGPPGVGKTTLIMRVLESLK 31 (193)
Q Consensus 3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~ 31 (193)
..+|.+++|+|||||||||+.+.|+..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 46799999999999999999999998763
No 205
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.22 E-value=5.7e-07 Score=72.37 Aligned_cols=30 Identities=20% Similarity=0.397 Sum_probs=27.1
Q ss_pred cCCCEEEEEcCCCCcHHHHHHHHHhhcccC
Q 029421 4 GAGKCFLVTGPPGVGKTTLIMRVLESLKAS 33 (193)
Q Consensus 4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~ 33 (193)
.++.+++|+||+|||||||++.|++++.+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~ 58 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK 58 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 457899999999999999999999998763
No 206
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.19 E-value=7.4e-07 Score=71.94 Aligned_cols=39 Identities=21% Similarity=0.192 Sum_probs=35.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEc
Q 029421 6 GKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYT 44 (193)
Q Consensus 6 Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~ 44 (193)
|.+++++|+||+||||++..|++.+.+..+++.+.+.+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~ 136 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADV 136 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 889999999999999999999999999888998877664
No 207
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=98.19 E-value=1.3e-06 Score=65.08 Aligned_cols=51 Identities=4% Similarity=0.054 Sum_probs=43.1
Q ss_pred CCCCEEEEecC-CCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421 106 ADTDLFVIDEV-GKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP 163 (193)
Q Consensus 106 ~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~ 163 (193)
.+|+++||||| ++||+.++..+.++++.+..+.++|++ ||+.. ...+||++
T Consensus 85 ~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivi------th~~~-~~~~ad~i 136 (173)
T 3kta_B 85 KPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVI------TLRDV-MMANADKI 136 (173)
T ss_dssp SCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEE------CSCHH-HHTTCSEE
T ss_pred CCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEE------EecHH-HHHhCCEE
Confidence 46799999999 699999999999999888777788999 99964 55678874
No 208
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.19 E-value=1e-05 Score=60.82 Aligned_cols=71 Identities=10% Similarity=0.255 Sum_probs=39.9
Q ss_pred CCCCEEEEecCCCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChhH-HHHHhcCCCcEEEEeCCCChhHHHHHHHH
Q 029421 106 ADTDLFVIDEVGKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPA-VARLRNHPGATIFTLSPGNRDSLKDNIYY 184 (193)
Q Consensus 106 ~~p~llllDEp~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~-~~~~~d~~~~~~~~~~~~~~~~l~~~~~~ 184 (193)
.++.++++||...++......+..++.....+..+|++ ++.... ...+..+. ..+.+.+.+.+++.+-+..
T Consensus 101 ~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~------~~~~~~~~~~l~~r~--~~i~~~~~~~~~~~~~l~~ 172 (226)
T 2chg_A 101 APFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILS------CNYVSRIIEPIQSRC--AVFRFKPVPKEAMKKRLLE 172 (226)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEE------ESCGGGSCHHHHTTS--EEEECCCCCHHHHHHHHHH
T ss_pred cCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEE------eCChhhcCHHHHHhC--ceeecCCCCHHHHHHHHHH
Confidence 56889999998766665544455555443335556666 444322 23344553 2455666666655544443
No 209
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.19 E-value=1.2e-06 Score=73.95 Aligned_cols=40 Identities=20% Similarity=0.190 Sum_probs=37.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEc
Q 029421 5 AGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYT 44 (193)
Q Consensus 5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~ 44 (193)
+|++++++|+|||||||++..|++.+.+..++|.+.+.+.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~ 136 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADT 136 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccc
Confidence 6889999999999999999999999999989999887765
No 210
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=98.18 E-value=1.5e-06 Score=67.44 Aligned_cols=36 Identities=28% Similarity=0.398 Sum_probs=31.2
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEE
Q 029421 3 AGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKV 39 (193)
Q Consensus 3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~ 39 (193)
+.+|.+++|.|++||||||+++.|+..+.+ .+.+..
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~ 58 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIM 58 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEE
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCcee
Confidence 348999999999999999999999999887 566644
No 211
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.17 E-value=1.4e-06 Score=71.45 Aligned_cols=76 Identities=13% Similarity=0.207 Sum_probs=45.0
Q ss_pred CCCCEEEEecCCCcccc--ccchHHHHHHHHh----C-CCcEEEEecCCCCCCChhH----HHHHhcCCCcEEEEeCCCC
Q 029421 106 ADTDLFVIDEVGKMELF--SSSFFPAVLRILE----S-NIPVLASIPAPKSGRDIPA----VARLRNHPGATIFTLSPGN 174 (193)
Q Consensus 106 ~~p~llllDEp~~LD~~--~~~~~~~ll~~l~----~-g~tvl~~~~~~~~tHd~~~----~~~~~d~~~~~~~~~~~~~ 174 (193)
..|.++++||...+... ....+..+++... . +..+|++ |++.+. ...+..+.....+.+.+.+
T Consensus 129 ~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~------t~~~~~~~~l~~~l~~r~~~~~i~l~~l~ 202 (387)
T 2v1u_A 129 RGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGI------TNSLGFVENLEPRVKSSLGEVELVFPPYT 202 (387)
T ss_dssp CSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEE------CSCSTTSSSSCHHHHTTTTSEECCBCCCC
T ss_pred CCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEE------ECCCchHhhhCHHHHhcCCCeEEeeCCCC
Confidence 34779999999665544 4455666666553 4 6688888 655421 2234455544455666667
Q ss_pred hhHHHHHHHHHHH
Q 029421 175 RDSLKDNIYYQLT 187 (193)
Q Consensus 175 ~~~l~~~~~~~~~ 187 (193)
.+++.+-+...+.
T Consensus 203 ~~~~~~il~~~~~ 215 (387)
T 2v1u_A 203 APQLRDILETRAE 215 (387)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7666665555544
No 212
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=98.16 E-value=1.5e-06 Score=65.63 Aligned_cols=33 Identities=21% Similarity=0.246 Sum_probs=27.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEece
Q 029421 6 GKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGF 42 (193)
Q Consensus 6 Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~ 42 (193)
..+++|+|++||||||+.+.|++.+ |...+++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d 50 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGD 50 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCC
Confidence 4589999999999999999999876 55556543
No 213
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.16 E-value=3.2e-06 Score=66.96 Aligned_cols=28 Identities=39% Similarity=0.534 Sum_probs=24.6
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421 3 AGAGKCFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
+..+..+.|.||+|+|||||++.++..+
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3567789999999999999999999874
No 214
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.14 E-value=5.2e-07 Score=81.65 Aligned_cols=32 Identities=22% Similarity=0.244 Sum_probs=26.1
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHhhcccCC
Q 029421 3 AGAGKCFLVTGPPGVGKTTLIMRVLESLKASN 34 (193)
Q Consensus 3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~ 34 (193)
+..|+.++++||+||||||++.++++...+..
T Consensus 106 l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~ 137 (773)
T 2xau_A 106 YQNNQIMVFVGETGSGKTTQIPQFVLFDEMPH 137 (773)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHCGG
T ss_pred HhCCCeEEEECCCCCCHHHHHHHHHHHhcccc
Confidence 45688999999999999999999977654443
No 215
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.14 E-value=2.1e-06 Score=69.82 Aligned_cols=73 Identities=10% Similarity=0.116 Sum_probs=42.1
Q ss_pred CCCCEEEEecCCCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChh-HHHHHhcCCCcEEEEeCCCChhHHHHHHHH
Q 029421 106 ADTDLFVIDEVGKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIP-AVARLRNHPGATIFTLSPGNRDSLKDNIYY 184 (193)
Q Consensus 106 ~~p~llllDEp~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~-~~~~~~d~~~~~~~~~~~~~~~~l~~~~~~ 184 (193)
.++.++++||...+++.....+..++........+|++ +++.. ....+.+|. ..+.+.+.+.+++.+.+..
T Consensus 132 ~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~------~~~~~~l~~~l~sR~--~~i~~~~~~~~~~~~~l~~ 203 (353)
T 1sxj_D 132 PPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLI------CNYVTRIIDPLASQC--SKFRFKALDASNAIDRLRF 203 (353)
T ss_dssp CSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEE------ESCGGGSCHHHHHHS--EEEECCCCCHHHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEE------eCchhhCcchhhccC--ceEEeCCCCHHHHHHHHHH
Confidence 35679999998777776655555555554334455666 44433 223444443 2445566666666665554
Q ss_pred HH
Q 029421 185 QL 186 (193)
Q Consensus 185 ~~ 186 (193)
.+
T Consensus 204 ~~ 205 (353)
T 1sxj_D 204 IS 205 (353)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 216
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=98.14 E-value=1.1e-06 Score=66.28 Aligned_cols=22 Identities=32% Similarity=0.303 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 029421 8 CFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl 29 (193)
+++|+|+|||||||+.+.|+++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFREL 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHHHC
Confidence 6899999999999999999993
No 217
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=98.09 E-value=2.4e-05 Score=60.52 Aligned_cols=27 Identities=37% Similarity=0.455 Sum_probs=21.8
Q ss_pred cCCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421 4 GAGKCFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
.+|.++.++||.|+||||++..++.-+
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~ 36 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRL 36 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHH
Confidence 468899999999999999876665544
No 218
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.07 E-value=3.5e-05 Score=59.94 Aligned_cols=27 Identities=41% Similarity=0.525 Sum_probs=23.1
Q ss_pred cCCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421 4 GAGKCFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
....-+.|.||+|+||||+++.++..+
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 345568999999999999999999864
No 219
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=98.06 E-value=8e-07 Score=76.87 Aligned_cols=28 Identities=25% Similarity=0.400 Sum_probs=24.9
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhh
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl 29 (193)
|++.+| +.+|+|+||||||||+.+|..+
T Consensus 56 l~f~~g-~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 56 LELGGG-FCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp EECCCS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred EecCCC-eEEEEcCCCCCHHHHHHHHHHH
Confidence 356678 9999999999999999999877
No 220
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=98.04 E-value=3.5e-06 Score=62.73 Aligned_cols=28 Identities=29% Similarity=0.345 Sum_probs=24.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhhcccC
Q 029421 6 GKCFLVTGPPGVGKTTLIMRVLESLKAS 33 (193)
Q Consensus 6 Ge~~~l~GpnGsGKSTLl~~i~gl~~~~ 33 (193)
-.+++|+|++|||||||++.|++.+++.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~ 33 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCAR 33 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcccc
Confidence 3589999999999999999999987654
No 221
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=98.03 E-value=2.1e-06 Score=65.34 Aligned_cols=24 Identities=33% Similarity=0.527 Sum_probs=21.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhhc
Q 029421 7 KCFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 7 e~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
.+.+|+|||||||||++.+|.-.+
T Consensus 24 ~~~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHh
Confidence 389999999999999999997554
No 222
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.02 E-value=2.8e-06 Score=71.96 Aligned_cols=24 Identities=33% Similarity=0.560 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcc
Q 029421 8 CFLVTGPPGVGKTTLIMRVLESLK 31 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl~~ 31 (193)
.++|+|+||+|||||++.|+|...
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~ 205 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKER 205 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTT
T ss_pred eEEEECCCCCCHHHHHHHHhCCcc
Confidence 699999999999999999999853
No 223
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=98.02 E-value=3.3e-06 Score=66.30 Aligned_cols=39 Identities=21% Similarity=0.261 Sum_probs=30.9
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceE
Q 029421 3 AGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFY 43 (193)
Q Consensus 3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~ 43 (193)
...+.++.|+|++||||||+.+.|+..+. .+.+.+++..
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~ 67 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDS 67 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGG
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHH
Confidence 45678999999999999999999998864 2456666643
No 224
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=98.00 E-value=2.2e-06 Score=70.81 Aligned_cols=31 Identities=29% Similarity=0.496 Sum_probs=26.5
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHhhcccC
Q 029421 3 AGAGKCFLVTGPPGVGKTTLIMRVLESLKAS 33 (193)
Q Consensus 3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~ 33 (193)
+++|+++.|.||+|+|||||...++......
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~ 90 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQRE 90 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 5789999999999999999998888665443
No 225
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=98.00 E-value=1.7e-05 Score=59.43 Aligned_cols=23 Identities=39% Similarity=0.590 Sum_probs=19.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHH
Q 029421 5 AGKCFLVTGPPGVGKTTLIMRVL 27 (193)
Q Consensus 5 ~Ge~~~l~GpnGsGKSTLl~~i~ 27 (193)
+|.++.++||.||||||++.-++
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~ 24 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFV 24 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHH
Confidence 48899999999999999974443
No 226
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=98.00 E-value=4e-06 Score=62.52 Aligned_cols=29 Identities=34% Similarity=0.581 Sum_probs=25.5
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhh
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl 29 (193)
++..+|.+++|+|++||||||+.+.|+..
T Consensus 5 ~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 5 MEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp -CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 34567899999999999999999999876
No 227
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.99 E-value=2.6e-06 Score=71.26 Aligned_cols=39 Identities=23% Similarity=0.361 Sum_probs=31.1
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHhh-----------cccCCCCeEEec
Q 029421 3 AGAGKCFLVTGPPGVGKTTLIMRVLES-----------LKASNPSLKVQG 41 (193)
Q Consensus 3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl-----------~~~~~G~i~~~g 41 (193)
+..|..++|+|+||+|||||++.|+|. +.|..|.+.+.+
T Consensus 19 i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~ 68 (396)
T 2ohf_A 19 FGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPD 68 (396)
T ss_dssp SSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCC
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECC
Confidence 567888999999999999999999998 556667666654
No 228
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.99 E-value=4.4e-06 Score=71.95 Aligned_cols=37 Identities=38% Similarity=0.580 Sum_probs=29.8
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceE
Q 029421 3 AGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFY 43 (193)
Q Consensus 3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~ 43 (193)
+++| ++|+||||+|||||+++|++... .+.+.+++.+
T Consensus 63 ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~ 99 (499)
T 2dhr_A 63 IPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSD 99 (499)
T ss_dssp CCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGG
T ss_pred CCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhH
Confidence 4556 89999999999999999999874 4666666643
No 229
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.99 E-value=3e-06 Score=62.83 Aligned_cols=27 Identities=37% Similarity=0.711 Sum_probs=23.6
Q ss_pred cCCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421 4 GAGKCFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
.+|.+++|+|++||||||+.+.|+..+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999998653
No 230
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.98 E-value=8.5e-05 Score=64.11 Aligned_cols=72 Identities=10% Similarity=0.096 Sum_probs=42.6
Q ss_pred CCCCEEEEecCCCccccccchHHHHHHHHhC-CCcEEEEecCCCCCCChh--HHHHHhcCCCcEEEEeCCCChhHHHHHH
Q 029421 106 ADTDLFVIDEVGKMELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIP--AVARLRNHPGATIFTLSPGNRDSLKDNI 182 (193)
Q Consensus 106 ~~p~llllDEp~~LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~--~~~~~~d~~~~~~~~~~~~~~~~l~~~~ 182 (193)
..+.++++||...+....+..+..+.+.+.. +..+|++ +.+.. .+..+..+ ...+.+.+.+.+++.+.+
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~~~~iIli------~~~~~~~~l~~l~~r--~~~i~f~~~~~~~~~~~L 218 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILI------CNERNLPKMRPFDRV--CLDIQFRRPDANSIKSRL 218 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHHCSSCEEEE------ESCTTSSTTGGGTTT--SEEEECCCCCHHHHHHHH
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHhcCCCEEEE------EcCCCCccchhhHhc--eEEEEeCCCCHHHHHHHH
Confidence 5678999999966655555555666666655 6778887 44422 12222222 234566666766666655
Q ss_pred HHH
Q 029421 183 YYQ 185 (193)
Q Consensus 183 ~~~ 185 (193)
...
T Consensus 219 ~~i 221 (516)
T 1sxj_A 219 MTI 221 (516)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 231
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.98 E-value=2.2e-06 Score=71.12 Aligned_cols=51 Identities=8% Similarity=0.105 Sum_probs=43.3
Q ss_pred CCC-CCEEEEecC-CCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcC
Q 029421 105 GAD-TDLFVIDEV-GKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNH 162 (193)
Q Consensus 105 ~~~-p~llllDEp-~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~ 162 (193)
..+ |+++||||| ++||+..+..+.+++..+..+.+||++ ||+.. +..+||+
T Consensus 302 ~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~------th~~~-~~~~~d~ 354 (371)
T 3auy_A 302 IGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIII------THHRE-LEDVADV 354 (371)
T ss_dssp HSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEE------ESCGG-GGGGCSE
T ss_pred hcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEE------EChHH-HHhhCCE
Confidence 468 999999999 699999999999998887656689999 99975 5677776
No 232
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.97 E-value=3.1e-06 Score=70.17 Aligned_cols=24 Identities=21% Similarity=0.238 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcc
Q 029421 8 CFLVTGPPGVGKTTLIMRVLESLK 31 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl~~ 31 (193)
+++|+|+||||||||++.++|...
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~ 204 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQ 204 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc
Confidence 399999999999999999998754
No 233
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.96 E-value=3e-05 Score=63.39 Aligned_cols=26 Identities=31% Similarity=0.598 Sum_probs=22.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcccC
Q 029421 8 CFLVTGPPGVGKTTLIMRVLESLKAS 33 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl~~~~ 33 (193)
.+.|.||.|+||||+++.++..+...
T Consensus 40 ~~ll~G~~G~GKT~la~~la~~l~~~ 65 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAKGLNCE 65 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHSCT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 58999999999999999999877543
No 234
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.96 E-value=2.1e-05 Score=56.29 Aligned_cols=27 Identities=19% Similarity=0.194 Sum_probs=23.1
Q ss_pred cCCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421 4 GAGKCFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
..+.-+.|.||+|+|||++.+.|....
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 345678999999999999999998764
No 235
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.95 E-value=4e-06 Score=61.63 Aligned_cols=27 Identities=22% Similarity=0.433 Sum_probs=23.3
Q ss_pred cCCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421 4 GAGKCFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
.+|..++|+|++|+|||||++.+++..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367889999999999999999999864
No 236
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.95 E-value=5.3e-06 Score=64.26 Aligned_cols=27 Identities=19% Similarity=0.297 Sum_probs=24.5
Q ss_pred cCCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421 4 GAGKCFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
.+|.+++|+|++||||||+.+.|++.+
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 468899999999999999999999854
No 237
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.94 E-value=3.7e-05 Score=61.42 Aligned_cols=28 Identities=32% Similarity=0.484 Sum_probs=23.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhhccc
Q 029421 5 AGKCFLVTGPPGVGKTTLIMRVLESLKA 32 (193)
Q Consensus 5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~~~ 32 (193)
.+..+.|.||+|+||||+.+.++..+..
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~~ 93 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLHR 93 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3457999999999999999999987643
No 238
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.93 E-value=5.5e-06 Score=60.38 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 029421 8 CFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
+++|+|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 78999999999999999998775
No 239
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.92 E-value=7.5e-06 Score=60.22 Aligned_cols=27 Identities=15% Similarity=0.351 Sum_probs=24.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhhcc
Q 029421 5 AGKCFLVTGPPGVGKTTLIMRVLESLK 31 (193)
Q Consensus 5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~~ 31 (193)
.|.++.|+|++||||||+.+.|+..+.
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 367899999999999999999998764
No 240
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.89 E-value=5.2e-06 Score=61.29 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 029421 8 CFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl 29 (193)
.++|+|++|+|||||++.++|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999975
No 241
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.87 E-value=1.3e-05 Score=61.14 Aligned_cols=32 Identities=19% Similarity=0.145 Sum_probs=26.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEec
Q 029421 5 AGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQG 41 (193)
Q Consensus 5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g 41 (193)
.+.+++|+|++||||||+.+.|+.+ |...++.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~l-----g~~~id~ 34 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFADL-----GINVIDA 34 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHT-----TCEEEEH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHc-----CCEEEEc
Confidence 4678999999999999999999973 5444543
No 242
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=97.86 E-value=1.2e-05 Score=66.99 Aligned_cols=37 Identities=14% Similarity=0.187 Sum_probs=32.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEec
Q 029421 5 AGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQG 41 (193)
Q Consensus 5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g 41 (193)
.+..++|+||+|||||||++.+++...+..+.|.+.+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D 70 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIID 70 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence 5678999999999999999999998888778887754
No 243
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.85 E-value=8.1e-06 Score=59.33 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 029421 8 CFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
.++|+|++|+|||||++.++|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 244
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.84 E-value=1e-05 Score=59.99 Aligned_cols=27 Identities=41% Similarity=0.632 Sum_probs=23.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhhcc
Q 029421 5 AGKCFLVTGPPGVGKTTLIMRVLESLK 31 (193)
Q Consensus 5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~~ 31 (193)
+|.+++|.|++||||||+.+.|+..+.
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 367999999999999999999987653
No 245
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.83 E-value=1e-05 Score=60.16 Aligned_cols=28 Identities=36% Similarity=0.465 Sum_probs=24.8
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421 3 AGAGKCFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
+..+.++.|+|++||||||+.+.|+..+
T Consensus 2 ~~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 2 MQTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CSCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4568899999999999999999998754
No 246
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.81 E-value=1.5e-05 Score=58.99 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=24.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhhcccC
Q 029421 7 KCFLVTGPPGVGKTTLIMRVLESLKAS 33 (193)
Q Consensus 7 e~~~l~GpnGsGKSTLl~~i~gl~~~~ 33 (193)
.+++|+|++|||||||+..|+..++..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 479999999999999999999987754
No 247
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.81 E-value=1.6e-05 Score=63.71 Aligned_cols=36 Identities=28% Similarity=0.529 Sum_probs=28.4
Q ss_pred cCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEec
Q 029421 4 GAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQG 41 (193)
Q Consensus 4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g 41 (193)
..|.++.|.|||||||||+.+.|+..++ .|.+.+++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 3577999999999999999999987653 25566654
No 248
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.81 E-value=7.3e-06 Score=60.67 Aligned_cols=23 Identities=30% Similarity=0.635 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 029421 8 CFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
.++|+|++|+|||||++.+++..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999864
No 249
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.80 E-value=9.3e-06 Score=66.93 Aligned_cols=30 Identities=20% Similarity=0.407 Sum_probs=26.6
Q ss_pred cccCCCE--EEEEcCCCCcHHHHHHHHHhhcc
Q 029421 2 AAGAGKC--FLVTGPPGVGKTTLIMRVLESLK 31 (193)
Q Consensus 2 ~i~~Ge~--~~l~GpnGsGKSTLl~~i~gl~~ 31 (193)
.+++|++ ++|+|++||||||+.++|++.+.
T Consensus 18 ~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 18 RIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp TTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 4678888 99999999999999999999764
No 250
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.80 E-value=1.6e-05 Score=59.68 Aligned_cols=27 Identities=33% Similarity=0.495 Sum_probs=24.8
Q ss_pred cCCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421 4 GAGKCFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
.+|.+++|+|+.||||||+.+.|+..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999999876
No 251
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.80 E-value=1.2e-05 Score=73.04 Aligned_cols=31 Identities=29% Similarity=0.499 Sum_probs=28.0
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhcc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLK 31 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~ 31 (193)
|.+.+|+.++|+||||||||||+++|++.+.
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 3578899999999999999999999999864
No 252
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.79 E-value=1.8e-05 Score=59.26 Aligned_cols=32 Identities=19% Similarity=0.011 Sum_probs=26.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEece
Q 029421 6 GKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGF 42 (193)
Q Consensus 6 Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~ 42 (193)
..+++|+|++||||||+.+.|+.. |...++.-
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-----g~~~id~d 39 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-----GYPVLDLD 39 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-----TCCEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-----CCEEEccc
Confidence 468999999999999999999985 65666543
No 253
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.79 E-value=1.4e-05 Score=59.05 Aligned_cols=28 Identities=39% Similarity=0.381 Sum_probs=24.4
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421 3 AGAGKCFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
+..+.+++|+|++||||||+.+.|+..+
T Consensus 8 ~~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 8 FMLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp TCCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4567889999999999999999998664
No 254
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.78 E-value=1.3e-05 Score=62.43 Aligned_cols=25 Identities=28% Similarity=0.506 Sum_probs=22.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421 6 GKCFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 6 Ge~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
.-+++|.||+||||||+.+.|+..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999999654
No 255
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.78 E-value=3.9e-06 Score=63.58 Aligned_cols=26 Identities=27% Similarity=0.516 Sum_probs=23.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcccC
Q 029421 8 CFLVTGPPGVGKTTLIMRVLESLKAS 33 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl~~~~ 33 (193)
+++|.|++||||||+++.|+..+...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~ 27 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAA 27 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 68999999999999999999887643
No 256
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.77 E-value=1.4e-05 Score=58.12 Aligned_cols=20 Identities=40% Similarity=0.697 Sum_probs=18.8
Q ss_pred CEEEEEcCCCCcHHHHHHHH
Q 029421 7 KCFLVTGPPGVGKTTLIMRV 26 (193)
Q Consensus 7 e~~~l~GpnGsGKSTLl~~i 26 (193)
.+++|+||+||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999999
No 257
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.76 E-value=1.7e-05 Score=59.40 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 029421 8 CFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999864
No 258
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.76 E-value=1.7e-05 Score=63.81 Aligned_cols=28 Identities=36% Similarity=0.531 Sum_probs=25.7
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421 3 AGAGKCFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
+.++..+.|.||+|+|||||++++++..
T Consensus 46 ~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 46 MTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 5678899999999999999999999875
No 259
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.75 E-value=1.5e-05 Score=67.23 Aligned_cols=33 Identities=21% Similarity=0.361 Sum_probs=28.4
Q ss_pred cccCCCEEEEEcCCCCcHHHHHHHHHhhcccCC
Q 029421 2 AAGAGKCFLVTGPPGVGKTTLIMRVLESLKASN 34 (193)
Q Consensus 2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~ 34 (193)
++.+|++++|+||||||||||+++|++++.+++
T Consensus 22 ~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~~ 54 (430)
T 1w1w_A 22 GFGESNFTSIIGPNGSGKSNMMDAISFVLGVRS 54 (430)
T ss_dssp ECTTCSEEEEECSTTSSHHHHHHHHHHHTTC--
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHhhhcccc
Confidence 456789999999999999999999999988754
No 260
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.75 E-value=1.6e-05 Score=59.76 Aligned_cols=23 Identities=30% Similarity=0.745 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 029421 8 CFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
.++|+||||||||||++.|....
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 47899999999999999997654
No 261
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.75 E-value=1.6e-05 Score=66.28 Aligned_cols=32 Identities=31% Similarity=0.526 Sum_probs=28.7
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHhhccc
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKA 32 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~ 32 (193)
+.+.+|+.++|+||+|+|||||++.|++.+..
T Consensus 169 ~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~ 200 (422)
T 3ice_A 169 SPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAY 200 (422)
T ss_dssp SCCBTTCEEEEECCSSSSHHHHHHHHHHHHHH
T ss_pred eeecCCcEEEEecCCCCChhHHHHHHHHHHhh
Confidence 46789999999999999999999999988643
No 262
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.75 E-value=1.7e-05 Score=65.72 Aligned_cols=29 Identities=28% Similarity=0.436 Sum_probs=25.0
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHhhcc
Q 029421 3 AGAGKCFLVTGPPGVGKTTLIMRVLESLK 31 (193)
Q Consensus 3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~ 31 (193)
+++|+++.|.||+|+|||||...++....
T Consensus 71 l~~G~li~I~G~pGsGKTtlal~la~~~~ 99 (366)
T 1xp8_A 71 IPRGRITEIYGPESGGKTTLALAIVAQAQ 99 (366)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccCCcEEEEEcCCCCChHHHHHHHHHHHH
Confidence 56899999999999999999988775543
No 263
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.75 E-value=1.5e-05 Score=58.72 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 029421 8 CFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
.++|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 68999999999999999999865
No 264
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.74 E-value=1.6e-05 Score=62.52 Aligned_cols=23 Identities=26% Similarity=0.518 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 029421 8 CFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
+++|+||||||||||.+.|++.+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999999865
No 265
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.74 E-value=0.00012 Score=55.16 Aligned_cols=27 Identities=22% Similarity=0.352 Sum_probs=22.3
Q ss_pred cCCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421 4 GAGKCFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
.+|.++.++||-||||||.+--++.-+
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~ 32 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRA 32 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 568999999999999998876665544
No 266
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.73 E-value=1.9e-05 Score=59.62 Aligned_cols=29 Identities=28% Similarity=0.393 Sum_probs=25.1
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHhhcc
Q 029421 3 AGAGKCFLVTGPPGVGKTTLIMRVLESLK 31 (193)
Q Consensus 3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~ 31 (193)
..+|.+++|+|+.||||||+.+.|+..+.
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35688999999999999999999997654
No 267
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.72 E-value=1.3e-05 Score=66.40 Aligned_cols=25 Identities=24% Similarity=0.397 Sum_probs=21.4
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHh
Q 029421 3 AGAGKCFLVTGPPGVGKTTLIMRVLE 28 (193)
Q Consensus 3 i~~Ge~~~l~GpnGsGKSTLl~~i~g 28 (193)
+.+| +.+|+|||||||||++.+|.=
T Consensus 23 f~~g-l~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 23 FEKG-IVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp CCSE-EEEEEECTTSSHHHHHHHHHH
T ss_pred cCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 4444 899999999999999999973
No 268
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.71 E-value=2.1e-05 Score=59.33 Aligned_cols=28 Identities=32% Similarity=0.373 Sum_probs=24.7
Q ss_pred cCCCEEEEEcCCCCcHHHHHHHHHhhcc
Q 029421 4 GAGKCFLVTGPPGVGKTTLIMRVLESLK 31 (193)
Q Consensus 4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~~ 31 (193)
..|.+++|+|+.||||||+.+.|+..+.
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999999987643
No 269
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.71 E-value=2.2e-05 Score=59.04 Aligned_cols=28 Identities=18% Similarity=0.254 Sum_probs=25.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhhccc
Q 029421 5 AGKCFLVTGPPGVGKTTLIMRVLESLKA 32 (193)
Q Consensus 5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~~~ 32 (193)
+|.+++|.|++||||||+.+.|+..+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 5779999999999999999999987654
No 270
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.71 E-value=2e-05 Score=58.64 Aligned_cols=27 Identities=26% Similarity=0.465 Sum_probs=24.2
Q ss_pred cCCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421 4 GAGKCFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
.++.+++|+|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998754
No 271
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.71 E-value=7.7e-05 Score=60.64 Aligned_cols=76 Identities=13% Similarity=0.179 Sum_probs=46.2
Q ss_pred CCCCEEEEecCCCccccccchHHHHHHHHhC---CCcEEEEecCCCCCCChhHHH-----HHhcCCCcEEEEeCCCChhH
Q 029421 106 ADTDLFVIDEVGKMELFSSSFFPAVLRILES---NIPVLASIPAPKSGRDIPAVA-----RLRNHPGATIFTLSPGNRDS 177 (193)
Q Consensus 106 ~~p~llllDEp~~LD~~~~~~~~~ll~~l~~---g~tvl~~~~~~~~tHd~~~~~-----~~~d~~~~~~~~~~~~~~~~ 177 (193)
..+-++++||...+. .+..+..+++.... ...+|.+ +++++... ++.++.....+...+.+.++
T Consensus 131 ~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i------~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~e 202 (318)
T 3te6_A 131 KRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICV------GGHNVTIREQINIMPSLKAHFTEIKLNKVDKNE 202 (318)
T ss_dssp SCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEE------CCSSCCCHHHHHTCHHHHTTEEEEECCCCCHHH
T ss_pred CCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEE------ecCcccchhhcchhhhccCCceEEEeCCCCHHH
Confidence 456799999995544 34555666653322 3456666 55543222 23344544566777778888
Q ss_pred HHHHHHHHHHHH
Q 029421 178 LKDNIYYQLTDA 189 (193)
Q Consensus 178 l~~~~~~~~~~~ 189 (193)
+.+-+.+.+...
T Consensus 203 l~~Il~~Rl~~~ 214 (318)
T 3te6_A 203 LQQMIITRLKSL 214 (318)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 888777777653
No 272
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.71 E-value=2.3e-05 Score=58.01 Aligned_cols=26 Identities=19% Similarity=0.181 Sum_probs=22.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421 5 AGKCFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
.+.+++|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999998765
No 273
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.71 E-value=2e-05 Score=57.71 Aligned_cols=22 Identities=36% Similarity=0.563 Sum_probs=20.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHh
Q 029421 7 KCFLVTGPPGVGKTTLIMRVLE 28 (193)
Q Consensus 7 e~~~l~GpnGsGKSTLl~~i~g 28 (193)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999987
No 274
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.68 E-value=2.8e-05 Score=60.68 Aligned_cols=25 Identities=40% Similarity=0.614 Sum_probs=22.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421 6 GKCFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 6 Ge~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
..-+.|.||+|+|||||+++|++..
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHc
Confidence 3458999999999999999999875
No 275
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.68 E-value=2.1e-05 Score=63.39 Aligned_cols=24 Identities=33% Similarity=0.589 Sum_probs=22.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhh
Q 029421 6 GKCFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 6 Ge~~~l~GpnGsGKSTLl~~i~gl 29 (193)
+.+++|+|+||+|||||++.|.|.
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 348999999999999999999986
No 276
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.67 E-value=2.5e-05 Score=60.35 Aligned_cols=28 Identities=18% Similarity=0.216 Sum_probs=23.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcccCCC
Q 029421 8 CFLVTGPPGVGKTTLIMRVLESLKASNP 35 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl~~~~~G 35 (193)
.++|+|++|+|||||++.|+|...+.++
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 5899999999999999999987655444
No 277
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.67 E-value=2.5e-05 Score=64.36 Aligned_cols=31 Identities=16% Similarity=0.292 Sum_probs=26.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHh--hcccCCCCeE
Q 029421 8 CFLVTGPPGVGKTTLIMRVLE--SLKASNPSLK 38 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~g--l~~~~~G~i~ 38 (193)
.++|+|++|||||||++.|+| .+++.+|.+.
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT 68 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVT 68 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCcCCCCCCccc
Confidence 799999999999999999999 5566667654
No 278
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.66 E-value=3e-05 Score=61.94 Aligned_cols=31 Identities=35% Similarity=0.594 Sum_probs=27.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhhcccCCCCe
Q 029421 7 KCFLVTGPPGVGKTTLIMRVLESLKASNPSL 37 (193)
Q Consensus 7 e~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i 37 (193)
..+.|.||+|+||||++++|++.+.+..+.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 5799999999999999999999987765543
No 279
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.65 E-value=2.7e-05 Score=57.76 Aligned_cols=26 Identities=35% Similarity=0.520 Sum_probs=22.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421 5 AGKCFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
++.+++|+|++||||||+.+.|+..+
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 36689999999999999999998654
No 280
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.64 E-value=2.9e-05 Score=58.33 Aligned_cols=23 Identities=30% Similarity=0.566 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 029421 8 CFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
+++|+|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999999865
No 281
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.64 E-value=2.2e-05 Score=57.83 Aligned_cols=27 Identities=33% Similarity=0.428 Sum_probs=19.0
Q ss_pred cCCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421 4 GAGKCFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
.++.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 357899999999999999999998764
No 282
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.63 E-value=0.00012 Score=58.50 Aligned_cols=71 Identities=8% Similarity=0.158 Sum_probs=40.3
Q ss_pred CCCEEEEecCCCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChhH-HHHHhcCCCcEEEEeCCCChhHHHHHHHHH
Q 029421 107 DTDLFVIDEVGKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPA-VARLRNHPGATIFTLSPGNRDSLKDNIYYQ 185 (193)
Q Consensus 107 ~p~llllDEp~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~-~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~ 185 (193)
++.++++||...+.......+..++.....+..+|++ +++... ...+..+ ...+.+.+.+.+++.+-+...
T Consensus 107 ~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~------~~~~~~l~~~l~sr--~~~i~~~~~~~~~~~~~l~~~ 178 (323)
T 1sxj_B 107 KHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFA------CNQSNKIIEPLQSQ--CAILRYSKLSDEDVLKRLLQI 178 (323)
T ss_dssp CCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEE------ESCGGGSCHHHHTT--SEEEECCCCCHHHHHHHHHHH
T ss_pred CceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEE------eCChhhchhHHHhh--ceEEeecCCCHHHHHHHHHHH
Confidence 4889999998666655444445555443335566666 555432 2334444 235566666666665555443
No 283
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.62 E-value=2e-05 Score=58.78 Aligned_cols=27 Identities=30% Similarity=0.481 Sum_probs=24.0
Q ss_pred cCCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421 4 GAGKCFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
..+.+++|+|++||||||+.+.|+..+
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999999998765
No 284
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.61 E-value=0.00031 Score=58.32 Aligned_cols=25 Identities=40% Similarity=0.648 Sum_probs=22.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhh
Q 029421 5 AGKCFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 5 ~Ge~~~l~GpnGsGKSTLl~~i~gl 29 (193)
++..+.|.||+|+|||||++.++..
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHh
Confidence 3568999999999999999999876
No 285
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=97.61 E-value=4.4e-05 Score=63.15 Aligned_cols=36 Identities=22% Similarity=0.363 Sum_probs=29.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHh-----------hcccCCCCeEEec
Q 029421 6 GKCFLVTGPPGVGKTTLIMRVLE-----------SLKASNPSLKVQG 41 (193)
Q Consensus 6 Ge~~~l~GpnGsGKSTLl~~i~g-----------l~~~~~G~i~~~g 41 (193)
|..++|+|.+|+|||||++.|++ .+.|+.|.+.+.+
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 45789999999999999999998 3456667666654
No 286
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.60 E-value=6.1e-05 Score=56.51 Aligned_cols=27 Identities=33% Similarity=0.492 Sum_probs=23.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhhcccC
Q 029421 7 KCFLVTGPPGVGKTTLIMRVLESLKAS 33 (193)
Q Consensus 7 e~~~l~GpnGsGKSTLl~~i~gl~~~~ 33 (193)
..+.|.||+|+|||||++.++......
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~ 81 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR 81 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 689999999999999999999876543
No 287
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.60 E-value=3.3e-05 Score=57.15 Aligned_cols=24 Identities=50% Similarity=0.722 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcc
Q 029421 8 CFLVTGPPGVGKTTLIMRVLESLK 31 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl~~ 31 (193)
+++|.|++||||||+.+.|+..+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998764
No 288
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.60 E-value=0.00041 Score=58.77 Aligned_cols=26 Identities=35% Similarity=0.535 Sum_probs=23.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421 5 AGKCFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
+..-+.|.||+|+|||||++.++..+
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc
Confidence 45679999999999999999999875
No 289
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.59 E-value=2.2e-05 Score=58.88 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=20.5
Q ss_pred cCCCEEEEEcCCCCcHHHHHHHHHh
Q 029421 4 GAGKCFLVTGPPGVGKTTLIMRVLE 28 (193)
Q Consensus 4 ~~Ge~~~l~GpnGsGKSTLl~~i~g 28 (193)
+++ .++++|++|+|||||++.+.+
T Consensus 24 ~~~-ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 24 KTG-KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred CCc-EEEEECCCCCCHHHHHHHHhc
Confidence 344 478999999999999999975
No 290
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.58 E-value=4.5e-05 Score=58.17 Aligned_cols=27 Identities=30% Similarity=0.518 Sum_probs=23.7
Q ss_pred cCCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421 4 GAGKCFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
.+|.+++|+|++||||||+.+.|+..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 357899999999999999999998765
No 291
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.58 E-value=4e-05 Score=57.07 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=22.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhccc
Q 029421 8 CFLVTGPPGVGKTTLIMRVLESLKA 32 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl~~~ 32 (193)
+++|.|+.||||||+.+.|+..++.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999987643
No 292
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.56 E-value=5.4e-05 Score=56.88 Aligned_cols=26 Identities=38% Similarity=0.649 Sum_probs=23.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421 5 AGKCFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
.+.+++|+|++||||||+.+.|+..+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998764
No 293
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.55 E-value=5e-05 Score=56.18 Aligned_cols=26 Identities=27% Similarity=0.477 Sum_probs=22.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421 5 AGKCFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
.+.+++|+|++||||||+.+.|+..+
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998754
No 294
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.55 E-value=0.00021 Score=57.48 Aligned_cols=64 Identities=16% Similarity=0.296 Sum_probs=36.3
Q ss_pred CCCCEEEEecCCCcc-ccccchHHHHHHHHhCCCcEEEEecCCCCCCChhH-HHHHhcCCCcEEEEeCCCChhH
Q 029421 106 ADTDLFVIDEVGKME-LFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPA-VARLRNHPGATIFTLSPGNRDS 177 (193)
Q Consensus 106 ~~p~llllDEp~~LD-~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~-~~~~~d~~~~~~~~~~~~~~~~ 177 (193)
.+++++++||...+. ......+..++.....+..+|++ +++... ...+.+|. .++.+.+++.++
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~------~n~~~~l~~~l~sR~--~~i~~~~~~~~e 169 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIIT------ANNIDGIIKPLQSRC--RVITFGQPTDED 169 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEE------ESSGGGSCTTHHHHS--EEEECCCCCHHH
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEE------eCCccccCHHHHhhC--cEEEeCCCCHHH
Confidence 478999999996665 44444555555554446777777 554332 11222232 345665666554
No 295
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.54 E-value=4.8e-05 Score=58.38 Aligned_cols=27 Identities=26% Similarity=0.388 Sum_probs=22.8
Q ss_pred cCCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421 4 GAGKCFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
..+.+++|+|++||||||+.+.|+..+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999998654
No 296
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.53 E-value=4e-05 Score=57.03 Aligned_cols=22 Identities=32% Similarity=0.392 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 029421 8 CFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl 29 (193)
.++++|++|+|||||++.+.+-
T Consensus 25 ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 25 KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999873
No 297
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.52 E-value=2.6e-05 Score=55.74 Aligned_cols=37 Identities=11% Similarity=0.199 Sum_probs=25.7
Q ss_pred CCCEEEEecCCCccccccchHHHHHHHHhC-CCcEEEE
Q 029421 107 DTDLFVIDEVGKMELFSSSFFPAVLRILES-NIPVLAS 143 (193)
Q Consensus 107 ~p~llllDEp~~LD~~~~~~~~~ll~~l~~-g~tvl~~ 143 (193)
+..++++||...+++..+..+..++..... +..+|++
T Consensus 75 ~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~ 112 (143)
T 3co5_A 75 EGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIAS 112 (143)
T ss_dssp TTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEE
T ss_pred CCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEe
Confidence 357899999988877666656666655433 5667777
No 298
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.51 E-value=5.4e-05 Score=57.38 Aligned_cols=23 Identities=30% Similarity=0.562 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 029421 8 CFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
.++|+||+||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999997654
No 299
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.51 E-value=5.2e-05 Score=57.92 Aligned_cols=27 Identities=19% Similarity=0.255 Sum_probs=23.7
Q ss_pred cCCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421 4 GAGKCFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
..+.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 3 ADPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CCSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998765
No 300
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.50 E-value=6.5e-05 Score=56.38 Aligned_cols=26 Identities=27% Similarity=0.456 Sum_probs=22.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421 5 AGKCFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
...+++|+|++||||||+.+.|+..+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34689999999999999999998654
No 301
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.50 E-value=5.3e-05 Score=56.00 Aligned_cols=25 Identities=32% Similarity=0.506 Sum_probs=22.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421 6 GKCFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 6 Ge~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
+.+++|+|++||||||+.+.|+..+
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 2 APKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CCSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999998754
No 302
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.49 E-value=5.9e-05 Score=55.86 Aligned_cols=24 Identities=38% Similarity=0.440 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcc
Q 029421 8 CFLVTGPPGVGKTTLIMRVLESLK 31 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl~~ 31 (193)
+++|+|+.||||||+.+.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999988664
No 303
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.49 E-value=9.9e-05 Score=60.49 Aligned_cols=27 Identities=19% Similarity=0.022 Sum_probs=25.3
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHhh
Q 029421 3 AGAGKCFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl 29 (193)
+++|+++.|.||+|||||||+..++..
T Consensus 119 l~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 119 IESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999999999875
No 304
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.49 E-value=5.1e-05 Score=59.93 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 029421 8 CFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
.++|+|++|||||||++.++|..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999874
No 305
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.49 E-value=6.2e-05 Score=59.19 Aligned_cols=28 Identities=36% Similarity=0.547 Sum_probs=23.9
Q ss_pred cCCCEEEEEcCCCCcHHHHHHHHHhhcc
Q 029421 4 GAGKCFLVTGPPGVGKTTLIMRVLESLK 31 (193)
Q Consensus 4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~~ 31 (193)
.++.++.|+|++||||||+.+.|+..+.
T Consensus 2 ~~~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 2 GDIMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3567899999999999999999987643
No 306
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.49 E-value=5.8e-05 Score=55.01 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=21.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhhc
Q 029421 7 KCFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 7 e~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998754
No 307
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.48 E-value=7e-05 Score=54.56 Aligned_cols=24 Identities=25% Similarity=0.366 Sum_probs=21.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhhc
Q 029421 7 KCFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 7 e~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
++++|+|+.||||||+.+.|+..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999998754
No 308
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.48 E-value=4.4e-05 Score=58.97 Aligned_cols=27 Identities=22% Similarity=0.437 Sum_probs=22.9
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHhh
Q 029421 3 AGAGKCFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl 29 (193)
+.+|+.+++.||+||||||++..+...
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~~ 99 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFILD 99 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHhc
Confidence 456999999999999999998877543
No 309
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.47 E-value=0.00024 Score=56.81 Aligned_cols=23 Identities=48% Similarity=0.832 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 029421 8 CFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
.+.|.||.|+||||+++.++..+
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHh
Confidence 58999999999999999999875
No 310
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=97.47 E-value=9.3e-05 Score=54.76 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 029421 8 CFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl 29 (193)
.++|+|++|+|||||++.+.+-
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999877654
No 311
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.47 E-value=7.4e-05 Score=56.69 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 029421 8 CFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
.++|+||+||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998664
No 312
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.46 E-value=0.00063 Score=52.11 Aligned_cols=27 Identities=19% Similarity=0.208 Sum_probs=21.9
Q ss_pred cCCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421 4 GAGKCFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
.+|.+..++||-||||||.+--++--+
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~ 52 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRT 52 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 468999999999999999876665443
No 313
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.46 E-value=4e-05 Score=63.32 Aligned_cols=29 Identities=28% Similarity=0.448 Sum_probs=20.9
Q ss_pred EEEEcCCCCcHHHHHHHHHhhcccCCCCe
Q 029421 9 FLVTGPPGVGKTTLIMRVLESLKASNPSL 37 (193)
Q Consensus 9 ~~l~GpnGsGKSTLl~~i~gl~~~~~G~i 37 (193)
++|+|++|+|||||++.|.+......+.+
T Consensus 40 I~vvG~~g~GKSTLln~L~~~~~~~~~~~ 68 (361)
T 2qag_A 40 LMVVGESGLGKSTLINSLFLTDLYPERVI 68 (361)
T ss_dssp EEECCCTTSCHHHHHHHHTTCCC------
T ss_pred EEEEcCCCCCHHHHHHHHhCCCCCCCCcc
Confidence 69999999999999999988755444443
No 314
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.46 E-value=7.5e-05 Score=58.14 Aligned_cols=27 Identities=26% Similarity=0.432 Sum_probs=23.6
Q ss_pred cCCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421 4 GAGKCFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
.++.+++|+||+||||||+.+.|+..+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998654
No 315
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.45 E-value=0.00011 Score=58.57 Aligned_cols=23 Identities=39% Similarity=0.767 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 029421 8 CFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
.+.|.||+|+||||+++.++..+
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHHHh
Confidence 48999999999999999998875
No 316
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.45 E-value=8.1e-05 Score=54.04 Aligned_cols=23 Identities=26% Similarity=0.164 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 029421 8 CFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
+++|+|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998854
No 317
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.43 E-value=8.5e-05 Score=57.99 Aligned_cols=24 Identities=21% Similarity=0.353 Sum_probs=21.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhhc
Q 029421 7 KCFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 7 e~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
-+++|+|++||||||+.+.|+..+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998854
No 318
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.43 E-value=3.7e-05 Score=61.64 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=20.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhhcc
Q 029421 5 AGKCFLVTGPPGVGKTTLIMRVLESLK 31 (193)
Q Consensus 5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~~ 31 (193)
++-+++|.||+||||||+.+.|+..+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999999987543
No 319
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.42 E-value=8.2e-05 Score=56.07 Aligned_cols=24 Identities=29% Similarity=0.306 Sum_probs=21.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhhc
Q 029421 7 KCFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 7 e~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
-+++|+|+.||||||+.+.++..+
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 479999999999999999998763
No 320
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=97.42 E-value=8.3e-05 Score=54.95 Aligned_cols=23 Identities=26% Similarity=0.546 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 029421 8 CFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
.++++|++|||||||++.+.+..
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999864
No 321
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.41 E-value=0.00013 Score=59.23 Aligned_cols=28 Identities=21% Similarity=0.167 Sum_probs=25.4
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421 3 AGAGKCFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
+++|+++.|.||+|||||||+..++...
T Consensus 104 l~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 104 IETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 6789999999999999999999998753
No 322
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.41 E-value=0.0001 Score=58.58 Aligned_cols=26 Identities=42% Similarity=0.597 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421 5 AGKCFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
++..+.|.||+|+||||+++.+++..
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 46789999999999999999999864
No 323
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.38 E-value=9.8e-05 Score=52.93 Aligned_cols=22 Identities=32% Similarity=0.520 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 029421 8 CFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl 29 (193)
.++++|+.|+|||||++.+.+-
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999875
No 324
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.37 E-value=0.00011 Score=56.45 Aligned_cols=28 Identities=29% Similarity=0.507 Sum_probs=24.3
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421 3 AGAGKCFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
+.+..++.|+||+||||||..+.|+..+
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4566789999999999999999998764
No 325
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.37 E-value=0.0009 Score=60.28 Aligned_cols=23 Identities=48% Similarity=0.801 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 029421 8 CFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
.+.|.||+|+|||++.+.|+..+
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999886
No 326
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=97.36 E-value=0.00011 Score=52.37 Aligned_cols=23 Identities=35% Similarity=0.645 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 029421 8 CFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
.++++|+.|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998753
No 327
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.36 E-value=0.00063 Score=52.57 Aligned_cols=40 Identities=18% Similarity=0.297 Sum_probs=26.9
Q ss_pred CCCCEEEEecCC--Ccccccc-chHHHHHHHHhCCCcEEEEec
Q 029421 106 ADTDLFVIDEVG--KMELFSS-SFFPAVLRILESNIPVLASIP 145 (193)
Q Consensus 106 ~~p~llllDEp~--~LD~~~~-~~~~~ll~~l~~g~tvl~~~~ 145 (193)
..|+++|+||++ +.+.... ..+..+...+..|..++.++|
T Consensus 83 ~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~N 125 (228)
T 2r8r_A 83 AAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVN 125 (228)
T ss_dssp HCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEE
T ss_pred cCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEcc
Confidence 469999999994 3443332 455555555556989999844
No 328
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.36 E-value=0.00014 Score=53.12 Aligned_cols=28 Identities=25% Similarity=0.474 Sum_probs=23.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhhccc
Q 029421 5 AGKCFLVTGPPGVGKTTLIMRVLESLKA 32 (193)
Q Consensus 5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~~~ 32 (193)
.+..+.|.||.|+|||||++.++..+..
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 3467899999999999999999887643
No 329
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.36 E-value=7.3e-05 Score=72.41 Aligned_cols=36 Identities=25% Similarity=0.421 Sum_probs=30.4
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeE
Q 029421 3 AGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLK 38 (193)
Q Consensus 3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~ 38 (193)
+.+|+++.|.||+|+|||||+..++.......+.+.
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~Vl 764 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCA 764 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeE
Confidence 678999999999999999999999887765545543
No 330
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.35 E-value=0.00011 Score=56.23 Aligned_cols=23 Identities=35% Similarity=0.404 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 029421 8 CFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998754
No 331
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=97.35 E-value=0.00012 Score=52.28 Aligned_cols=22 Identities=32% Similarity=0.564 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 029421 8 CFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl 29 (193)
.++++|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 332
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.34 E-value=0.00011 Score=55.98 Aligned_cols=26 Identities=23% Similarity=0.374 Sum_probs=23.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421 5 AGKCFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
+|..++|+|+.||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998765
No 333
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=97.34 E-value=0.00011 Score=52.38 Aligned_cols=22 Identities=32% Similarity=0.700 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 029421 8 CFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl 29 (193)
.++++|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999875
No 334
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=97.33 E-value=0.00012 Score=52.24 Aligned_cols=22 Identities=27% Similarity=0.567 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 029421 8 CFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl 29 (193)
.++++|+.|+|||||++.+.+-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999875
No 335
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=97.33 E-value=0.00013 Score=52.46 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 029421 8 CFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
.++++|+.|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998764
No 336
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=97.33 E-value=0.00011 Score=58.57 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=21.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhh
Q 029421 6 GKCFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 6 Ge~~~l~GpnGsGKSTLl~~i~gl 29 (193)
..+++|+|++||||||+.+.|+.+
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~l 98 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKNL 98 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHC
Confidence 347999999999999999999853
No 337
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=97.33 E-value=0.00011 Score=53.10 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 029421 8 CFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl 29 (193)
-++++|++|+|||||++.+.+-
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 4899999999999999999865
No 338
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.32 E-value=0.00012 Score=52.55 Aligned_cols=22 Identities=36% Similarity=0.668 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 029421 8 CFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl 29 (193)
.++++|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999874
No 339
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=97.32 E-value=0.00013 Score=52.42 Aligned_cols=22 Identities=36% Similarity=0.543 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 029421 8 CFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl 29 (193)
.++++|+.|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4799999999999999999875
No 340
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.32 E-value=0.00013 Score=52.29 Aligned_cols=23 Identities=22% Similarity=0.537 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 029421 8 CFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
-++++|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 341
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=97.31 E-value=0.00013 Score=62.24 Aligned_cols=38 Identities=26% Similarity=0.367 Sum_probs=31.5
Q ss_pred cccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEE
Q 029421 2 AAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKV 39 (193)
Q Consensus 2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~ 39 (193)
.+-+|+.++|.|++|+|||||++.|+.-.....+.+.+
T Consensus 147 pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V 184 (473)
T 1sky_E 147 PYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGISV 184 (473)
T ss_dssp CEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEE
T ss_pred hhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcEEE
Confidence 45689999999999999999999998877655565554
No 342
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=97.31 E-value=0.00013 Score=52.92 Aligned_cols=23 Identities=35% Similarity=0.608 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 029421 8 CFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
.++++|+.|||||||++.+.+-.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998753
No 343
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=97.31 E-value=0.00014 Score=52.80 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 029421 8 CFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl 29 (193)
.++++|+.|+|||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999865
No 344
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=97.31 E-value=0.0013 Score=50.40 Aligned_cols=26 Identities=31% Similarity=0.295 Sum_probs=21.7
Q ss_pred cCCCEEEEEcCCCCcHHH-HHHHHHhh
Q 029421 4 GAGKCFLVTGPPGVGKTT-LIMRVLES 29 (193)
Q Consensus 4 ~~Ge~~~l~GpnGsGKST-Ll~~i~gl 29 (193)
..|.+..++||-|||||| |++.+...
T Consensus 26 ~~G~I~vitG~M~sGKTT~Llr~~~r~ 52 (219)
T 3e2i_A 26 HSGWIECITGSMFSGKSEELIRRLRRG 52 (219)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999 77877554
No 345
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=97.31 E-value=0.00022 Score=54.57 Aligned_cols=30 Identities=30% Similarity=0.399 Sum_probs=26.0
Q ss_pred cCCCEEEEEcCCCCcHHHHHHHHHhhcccC
Q 029421 4 GAGKCFLVTGPPGVGKTTLIMRVLESLKAS 33 (193)
Q Consensus 4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~ 33 (193)
.+|.++++.|++||||||+++.|+..+...
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~~ 33 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRER 33 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 468899999999999999999998877643
No 346
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=97.31 E-value=0.00012 Score=52.49 Aligned_cols=22 Identities=41% Similarity=0.752 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 029421 8 CFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl 29 (193)
-++++|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4799999999999999999875
No 347
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=97.30 E-value=0.00014 Score=52.05 Aligned_cols=22 Identities=32% Similarity=0.620 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 029421 8 CFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl 29 (193)
-++++|+.|+|||||++.+.+-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999874
No 348
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=97.29 E-value=0.00018 Score=52.14 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=22.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhh
Q 029421 5 AGKCFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 5 ~Ge~~~l~GpnGsGKSTLl~~i~gl 29 (193)
+.-.++++|++|+|||||++.+.+-
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4457899999999999999999874
No 349
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=97.29 E-value=0.00012 Score=52.59 Aligned_cols=22 Identities=32% Similarity=0.372 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 029421 8 CFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl 29 (193)
.++++|++|+|||||++.+.+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 3789999999999999999864
No 350
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=97.29 E-value=0.00013 Score=57.95 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 029421 8 CFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
.++|+|++|||||||++.++|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999863
No 351
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.29 E-value=0.00026 Score=69.52 Aligned_cols=35 Identities=26% Similarity=0.437 Sum_probs=27.4
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCe
Q 029421 3 AGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSL 37 (193)
Q Consensus 3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i 37 (193)
+++|+.+.|.||+|+|||||...++-......+.+
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v 1458 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTC 1458 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCE
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 67899999999999999999998875533333333
No 352
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=97.28 E-value=0.00011 Score=56.81 Aligned_cols=29 Identities=31% Similarity=0.441 Sum_probs=22.8
Q ss_pred cCCCEEEEEcCCCCcHHHHHHHHHhhccc
Q 029421 4 GAGKCFLVTGPPGVGKTTLIMRVLESLKA 32 (193)
Q Consensus 4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~ 32 (193)
.+|.++++.|++||||||+++.|+..+..
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~~ 51 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQE 51 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 57889999999999999999999887653
No 353
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=97.27 E-value=8.9e-05 Score=53.22 Aligned_cols=22 Identities=36% Similarity=0.474 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 029421 8 CFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl 29 (193)
-++++|++|+|||||++.+.|.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 4799999999999999999764
No 354
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=97.27 E-value=0.00014 Score=52.69 Aligned_cols=22 Identities=36% Similarity=0.665 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 029421 8 CFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl 29 (193)
.++++|+.|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999875
No 355
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.27 E-value=0.0002 Score=55.20 Aligned_cols=26 Identities=31% Similarity=0.572 Sum_probs=23.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421 5 AGKCFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
.+..++|+|+.||||||+.+.|+..+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998765
No 356
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.26 E-value=0.00015 Score=55.10 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 029421 8 CFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
.++|+|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57999999999999999998754
No 357
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.26 E-value=8.6e-05 Score=67.49 Aligned_cols=39 Identities=31% Similarity=0.475 Sum_probs=31.0
Q ss_pred cccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEece
Q 029421 2 AAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGF 42 (193)
Q Consensus 2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~ 42 (193)
.+.++..++|.||||+|||||.++|++.+.. +-+.+++.
T Consensus 507 ~~~~~~~vLL~GppGtGKT~Lakala~~~~~--~~i~v~~~ 545 (806)
T 1ypw_A 507 GMTPSKGVLFYGPPGCGKTLLAKAIANECQA--NFISIKGP 545 (806)
T ss_dssp CCCCCCCCCCBCCTTSSHHHHHHHHHHHHTC--CCCCCCCS
T ss_pred CCCCCceeEEECCCCCCHHHHHHHHHHHhCC--CEEEEech
Confidence 3567889999999999999999999998753 34455443
No 358
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=97.25 E-value=0.00013 Score=53.95 Aligned_cols=23 Identities=22% Similarity=0.439 Sum_probs=20.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhh
Q 029421 7 KCFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 7 e~~~l~GpnGsGKSTLl~~i~gl 29 (193)
-.++|+|+.|+|||||++.+.+-
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999875
No 359
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=97.25 E-value=0.0013 Score=50.86 Aligned_cols=36 Identities=14% Similarity=0.093 Sum_probs=27.2
Q ss_pred CCCCEEEEecCCCccccccchHHHHHHHHhC-CCcEEEEecCCCCCCC
Q 029421 106 ADTDLFVIDEVGKMELFSSSFFPAVLRILES-NIPVLASIPAPKSGRD 152 (193)
Q Consensus 106 ~~p~llllDEp~~LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd 152 (193)
.+.+++++||..-++. +.++++.+.+ |+.||++ .+|
T Consensus 89 ~~~dvViIDEaQF~~~-----v~el~~~l~~~gi~VI~~------GL~ 125 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD-----IVEFCEAMANAGKTVIVA------ALD 125 (234)
T ss_dssp TTCSEEEESSGGGCTT-----HHHHHHHHHHTTCEEEEE------CCS
T ss_pred ccCCEEEEEchhhhhh-----HHHHHHHHHhCCCEEEEE------ecc
Confidence 4679999999943321 6677777765 9999999 887
No 360
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=97.25 E-value=0.00018 Score=54.52 Aligned_cols=25 Identities=32% Similarity=0.521 Sum_probs=22.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421 6 GKCFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 6 Ge~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
+.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5689999999999999999999864
No 361
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=97.25 E-value=0.00017 Score=51.65 Aligned_cols=22 Identities=27% Similarity=0.649 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 029421 8 CFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl 29 (193)
-++++|+.|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
No 362
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=97.25 E-value=0.00017 Score=52.72 Aligned_cols=23 Identities=30% Similarity=0.655 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 029421 8 CFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
-++++|+.|+|||||++.+.+-.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47999999999999999998753
No 363
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=97.25 E-value=9.8e-05 Score=54.37 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=20.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhh
Q 029421 7 KCFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 7 e~~~l~GpnGsGKSTLl~~i~gl 29 (193)
-.++++|++|+|||||++.+.+-
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999764
No 364
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.25 E-value=0.0014 Score=53.16 Aligned_cols=69 Identities=14% Similarity=0.150 Sum_probs=40.7
Q ss_pred CCCCCEEEEecCCCccccccchHHHHHHHHhC---CCcEEEEecCCCCCCChhH-HHHHhcCCCcEEEEeCCCChhHHHH
Q 029421 105 GADTDLFVIDEVGKMELFSSSFFPAVLRILES---NIPVLASIPAPKSGRDIPA-VARLRNHPGATIFTLSPGNRDSLKD 180 (193)
Q Consensus 105 ~~~p~llllDEp~~LD~~~~~~~~~ll~~l~~---g~tvl~~~~~~~~tHd~~~-~~~~~d~~~~~~~~~~~~~~~~l~~ 180 (193)
..+.+++++||+..|...+ ...+++.+.+ +..+|++ +++... ...+..| ...+.+.+.+.+++.+
T Consensus 106 ~~~~kvviIdead~l~~~a---~naLLk~lEep~~~~~~Il~------t~~~~~l~~ti~SR--c~~~~~~~~~~~~~~~ 174 (334)
T 1a5t_A 106 LGGAKVVWVTDAALLTDAA---ANALLKTLEEPPAETWFFLA------TREPERLLATLRSR--CRLHYLAPPPEQYAVT 174 (334)
T ss_dssp TSSCEEEEESCGGGBCHHH---HHHHHHHHTSCCTTEEEEEE------ESCGGGSCHHHHTT--SEEEECCCCCHHHHHH
T ss_pred cCCcEEEEECchhhcCHHH---HHHHHHHhcCCCCCeEEEEE------eCChHhCcHHHhhc--ceeeeCCCCCHHHHHH
Confidence 3567999999986665433 4566676765 3455666 555432 3344444 2445666666666665
Q ss_pred HHHH
Q 029421 181 NIYY 184 (193)
Q Consensus 181 ~~~~ 184 (193)
.+.+
T Consensus 175 ~L~~ 178 (334)
T 1a5t_A 175 WLSR 178 (334)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 365
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=97.24 E-value=0.00017 Score=53.15 Aligned_cols=23 Identities=22% Similarity=0.504 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 029421 8 CFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
.++++|+.|+|||||++.+.+-.
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999999863
No 366
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=97.24 E-value=0.00018 Score=53.23 Aligned_cols=22 Identities=36% Similarity=0.604 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 029421 8 CFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl 29 (193)
-++|+|+.|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999999875
No 367
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=97.23 E-value=0.00018 Score=52.74 Aligned_cols=22 Identities=36% Similarity=0.662 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 029421 8 CFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl 29 (193)
.++|+|+.|+|||||++.+.+-
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 368
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=97.23 E-value=0.00018 Score=55.96 Aligned_cols=28 Identities=36% Similarity=0.573 Sum_probs=25.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhhccc
Q 029421 5 AGKCFLVTGPPGVGKTTLIMRVLESLKA 32 (193)
Q Consensus 5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~~~ 32 (193)
+|.++++.|++||||||+++.|+..+..
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~ 53 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQ 53 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5889999999999999999999987764
No 369
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=97.23 E-value=0.00014 Score=53.48 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 029421 8 CFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
.++++|+.|+|||||++.+.+-.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 58999999999999999998763
No 370
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=97.23 E-value=0.00019 Score=51.65 Aligned_cols=24 Identities=33% Similarity=0.505 Sum_probs=20.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhh
Q 029421 6 GKCFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 6 Ge~~~l~GpnGsGKSTLl~~i~gl 29 (193)
.-.++++|+.|+|||||++.+.+-
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 345899999999999999999764
No 371
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=97.23 E-value=0.00012 Score=53.11 Aligned_cols=22 Identities=36% Similarity=0.782 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 029421 8 CFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl 29 (193)
.++++|+.|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999764
No 372
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=97.22 E-value=0.00021 Score=52.62 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcc
Q 029421 8 CFLVTGPPGVGKTTLIMRVLESLK 31 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl~~ 31 (193)
.++|+|+.|+|||||++.+.|...
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 489999999999999999988654
No 373
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=97.21 E-value=0.0002 Score=51.22 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 029421 8 CFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl 29 (193)
-++++|++|+|||||++.+.+-
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999864
No 374
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.21 E-value=0.00017 Score=56.22 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 029421 8 CFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
.++|+|++|+|||||++.|.|--
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 58999999999999999999863
No 375
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=97.21 E-value=0.0002 Score=51.92 Aligned_cols=22 Identities=27% Similarity=0.321 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 029421 8 CFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl 29 (193)
.++++|+.|+|||||++.+.+-
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4899999999999999999875
No 376
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=97.21 E-value=0.00019 Score=57.16 Aligned_cols=22 Identities=36% Similarity=0.563 Sum_probs=20.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHh
Q 029421 7 KCFLVTGPPGVGKTTLIMRVLE 28 (193)
Q Consensus 7 e~~~l~GpnGsGKSTLl~~i~g 28 (193)
.++.|+|++||||||+.+.|+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999986
No 377
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=97.21 E-value=0.00015 Score=53.26 Aligned_cols=22 Identities=36% Similarity=0.607 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 029421 8 CFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl 29 (193)
.++++|++|+|||||++.+.+-
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 3789999999999999999875
No 378
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.20 E-value=0.00019 Score=52.36 Aligned_cols=27 Identities=26% Similarity=0.441 Sum_probs=23.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhhccc
Q 029421 6 GKCFLVTGPPGVGKTTLIMRVLESLKA 32 (193)
Q Consensus 6 Ge~~~l~GpnGsGKSTLl~~i~gl~~~ 32 (193)
+..+.|.||+|+|||||++.++..+..
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 557899999999999999999987644
No 379
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=97.20 E-value=0.00019 Score=51.97 Aligned_cols=22 Identities=36% Similarity=0.548 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 029421 8 CFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl 29 (193)
.++++|+.|+|||||++.+.+-
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 380
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=97.20 E-value=0.00031 Score=53.74 Aligned_cols=29 Identities=34% Similarity=0.449 Sum_probs=25.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhhcccC
Q 029421 5 AGKCFLVTGPPGVGKTTLIMRVLESLKAS 33 (193)
Q Consensus 5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~ 33 (193)
+|.++++-|++||||||.++.|...+...
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~ 30 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQL 30 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 58899999999999999999999887653
No 381
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.20 E-value=0.00011 Score=62.11 Aligned_cols=35 Identities=20% Similarity=0.291 Sum_probs=28.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEec
Q 029421 7 KCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQG 41 (193)
Q Consensus 7 e~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g 41 (193)
.+++++|++|+||||++..|++.+.....++.+-.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~ 134 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIA 134 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 58999999999999999999998765444555433
No 382
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.19 E-value=0.00022 Score=58.40 Aligned_cols=25 Identities=28% Similarity=0.514 Sum_probs=22.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhhcc
Q 029421 7 KCFLVTGPPGVGKTTLIMRVLESLK 31 (193)
Q Consensus 7 e~~~l~GpnGsGKSTLl~~i~gl~~ 31 (193)
.+++|+||+|||||||.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 3799999999999999999998763
No 383
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=97.19 E-value=0.00021 Score=51.70 Aligned_cols=23 Identities=30% Similarity=0.570 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 029421 8 CFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
.++++|+.|+|||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
No 384
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=97.19 E-value=0.00021 Score=52.04 Aligned_cols=22 Identities=27% Similarity=0.567 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 029421 8 CFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl 29 (193)
.++++|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 5899999999999999999875
No 385
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=97.19 E-value=0.00021 Score=52.55 Aligned_cols=22 Identities=32% Similarity=0.700 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 029421 8 CFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl 29 (193)
.++++|+.|+|||||++.+++-
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999875
No 386
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.18 E-value=0.00022 Score=51.80 Aligned_cols=23 Identities=35% Similarity=0.624 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 029421 8 CFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
.++++|+.|+|||||++.+.+-.
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 48999999999999999998753
No 387
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.18 E-value=0.00031 Score=59.53 Aligned_cols=35 Identities=23% Similarity=0.345 Sum_probs=28.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEE
Q 029421 5 AGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKV 39 (193)
Q Consensus 5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~ 39 (193)
++.+++++|++||||||++..|+..+....-++.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVll 133 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGV 133 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 35799999999999999999999888765445544
No 388
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=97.17 E-value=0.00013 Score=60.24 Aligned_cols=27 Identities=26% Similarity=0.322 Sum_probs=25.0
Q ss_pred CcccCCCEEEEEcCCCCcHHHHHHHHHh
Q 029421 1 MAAGAGKCFLVTGPPGVGKTTLIMRVLE 28 (193)
Q Consensus 1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~g 28 (193)
|++.+| +++|+|||||||||++++|.+
T Consensus 22 ~~~~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 22 LNFPEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp EECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEcCC-eEEEECCCCCChhHHHHHHHH
Confidence 467788 999999999999999999998
No 389
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.17 E-value=0.00022 Score=53.76 Aligned_cols=23 Identities=26% Similarity=0.546 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 029421 8 CFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
.++++|++|+|||||++.+.+-.
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998864
No 390
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=97.17 E-value=0.00024 Score=51.64 Aligned_cols=22 Identities=27% Similarity=0.656 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 029421 8 CFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl 29 (193)
.++++|+.|+|||||++.+.+-
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999875
No 391
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=97.16 E-value=0.00021 Score=60.07 Aligned_cols=26 Identities=35% Similarity=0.497 Sum_probs=22.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421 5 AGKCFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
...++.|+|++||||||+.+.|+..+
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 46899999999999999999997643
No 392
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=97.15 E-value=0.00022 Score=52.15 Aligned_cols=23 Identities=39% Similarity=0.665 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 029421 8 CFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
.++++|+.|+|||||++.+.+-.
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
No 393
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.15 E-value=0.0004 Score=56.15 Aligned_cols=28 Identities=18% Similarity=0.405 Sum_probs=25.1
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421 3 AGAGKCFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
+.+|+++.|.|++|+|||||+..++...
T Consensus 65 l~~G~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp BCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999999887553
No 394
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=97.15 E-value=0.00031 Score=53.96 Aligned_cols=29 Identities=34% Similarity=0.476 Sum_probs=26.4
Q ss_pred cCCCEEEEEcCCCCcHHHHHHHHHhhccc
Q 029421 4 GAGKCFLVTGPPGVGKTTLIMRVLESLKA 32 (193)
Q Consensus 4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~ 32 (193)
.+|.++++-|+.||||||+++.|+..+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 47999999999999999999999988765
No 395
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=97.14 E-value=0.00025 Score=52.77 Aligned_cols=22 Identities=27% Similarity=0.567 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 029421 8 CFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl 29 (193)
-++|+|+.|+|||||++.+.+-
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999865
No 396
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.14 E-value=0.00025 Score=53.65 Aligned_cols=25 Identities=36% Similarity=0.506 Sum_probs=22.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhhcc
Q 029421 7 KCFLVTGPPGVGKTTLIMRVLESLK 31 (193)
Q Consensus 7 e~~~l~GpnGsGKSTLl~~i~gl~~ 31 (193)
-.++++|+.|||||||++.+++...
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4789999999999999999988753
No 397
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=97.14 E-value=0.00026 Score=52.77 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 029421 8 CFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
No 398
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=97.14 E-value=0.00023 Score=52.25 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 029421 8 CFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl 29 (193)
.++++|++|+|||||++.+.+-
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999875
No 399
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=97.13 E-value=0.00024 Score=57.15 Aligned_cols=22 Identities=36% Similarity=0.626 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 029421 8 CFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl 29 (193)
.++|+|++|+|||||++.+.|.
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999985
No 400
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.13 E-value=0.00028 Score=53.76 Aligned_cols=23 Identities=35% Similarity=0.609 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 029421 8 CFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
++.|+||+||||+|..+.|+.-+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999998765
No 401
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.13 E-value=0.0008 Score=61.44 Aligned_cols=27 Identities=26% Similarity=0.487 Sum_probs=23.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhhccc
Q 029421 6 GKCFLVTGPPGVGKTTLIMRVLESLKA 32 (193)
Q Consensus 6 Ge~~~l~GpnGsGKSTLl~~i~gl~~~ 32 (193)
...+.|+||+|+||||+++.++..+..
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la~~l~~ 217 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLAQRIVK 217 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 345789999999999999999988754
No 402
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=97.13 E-value=0.00026 Score=52.15 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 029421 8 CFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
-++|+|+.|+|||||++.+.+-.
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
No 403
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.13 E-value=0.00035 Score=57.22 Aligned_cols=37 Identities=24% Similarity=0.434 Sum_probs=30.2
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEE
Q 029421 3 AGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKV 39 (193)
Q Consensus 3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~ 39 (193)
+.+|+++.|.|++|+|||||+..++.......+.+.+
T Consensus 43 l~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~ 79 (338)
T 4a1f_A 43 FNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAV 79 (338)
T ss_dssp BCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 6789999999999999999999998776554444544
No 404
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.13 E-value=0.0001 Score=53.86 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=20.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHh
Q 029421 6 GKCFLVTGPPGVGKTTLIMRVLE 28 (193)
Q Consensus 6 Ge~~~l~GpnGsGKSTLl~~i~g 28 (193)
.-.++++|++|+|||||++.+.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 44699999999999999998863
No 405
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=97.13 E-value=0.0003 Score=54.40 Aligned_cols=27 Identities=19% Similarity=0.337 Sum_probs=24.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhhcc
Q 029421 5 AGKCFLVTGPPGVGKTTLIMRVLESLK 31 (193)
Q Consensus 5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~~ 31 (193)
.|.+++|.|+.||||||+++.|+..++
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 367899999999999999999998763
No 406
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=97.13 E-value=0.00025 Score=57.16 Aligned_cols=22 Identities=36% Similarity=0.668 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 029421 8 CFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl 29 (193)
+++|+|++|+|||||++.+.|.
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 7999999999999999999985
No 407
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=97.12 E-value=0.00027 Score=52.11 Aligned_cols=23 Identities=35% Similarity=0.676 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 029421 8 CFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
.++|+|+.|+|||||++.+.+-.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998753
No 408
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=97.12 E-value=0.00025 Score=52.50 Aligned_cols=23 Identities=26% Similarity=0.537 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 029421 8 CFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998753
No 409
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=97.12 E-value=0.00028 Score=51.53 Aligned_cols=22 Identities=32% Similarity=0.635 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 029421 8 CFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl 29 (193)
.++++|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999864
No 410
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=97.11 E-value=0.00025 Score=58.79 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 029421 8 CFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
.++|+|++|+|||||++.|++..
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999873
No 411
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.11 E-value=0.00026 Score=52.31 Aligned_cols=22 Identities=36% Similarity=0.714 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 029421 8 CFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl 29 (193)
.++++|+.|+|||||++.+.+-
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 5899999999999999999874
No 412
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=97.11 E-value=0.00029 Score=51.37 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 029421 8 CFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl 29 (193)
.++++|+.|+|||||++.+.+-
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
No 413
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=97.11 E-value=0.00025 Score=55.67 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 029421 8 CFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl 29 (193)
.++|+|++|||||||++.+.|.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999986
No 414
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=97.10 E-value=0.0003 Score=54.28 Aligned_cols=29 Identities=28% Similarity=0.232 Sum_probs=25.6
Q ss_pred cCCCEEEEEcCCCCcHHHHHHHHHhhccc
Q 029421 4 GAGKCFLVTGPPGVGKTTLIMRVLESLKA 32 (193)
Q Consensus 4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~ 32 (193)
..|.++++.|++||||||+.+.|+..+..
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 36889999999999999999999887654
No 415
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.08 E-value=0.0005 Score=56.13 Aligned_cols=37 Identities=35% Similarity=0.710 Sum_probs=28.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEec
Q 029421 5 AGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQG 41 (193)
Q Consensus 5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g 41 (193)
+|..+.|.||+|+|||||++.++..+......+.+.+
T Consensus 69 ~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~ 105 (368)
T 3uk6_A 69 AGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAG 105 (368)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEG
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccc
Confidence 3568999999999999999999998764433344443
No 416
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=97.08 E-value=0.00032 Score=51.67 Aligned_cols=22 Identities=36% Similarity=0.495 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 029421 8 CFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl 29 (193)
.++++|+.|+|||||++.+.+-
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 417
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=97.08 E-value=0.00028 Score=53.57 Aligned_cols=25 Identities=32% Similarity=0.583 Sum_probs=22.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhh
Q 029421 5 AGKCFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 5 ~Ge~~~l~GpnGsGKSTLl~~i~gl 29 (193)
.|..++|+||+|||||||...|+..
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4678999999999999999998764
No 418
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=97.08 E-value=0.00031 Score=52.27 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 029421 8 CFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl 29 (193)
.++|+|++|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999875
No 419
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=97.08 E-value=0.00028 Score=52.61 Aligned_cols=23 Identities=30% Similarity=0.366 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 029421 8 CFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
.++|+|+.|+|||||++.+.+-.
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 48999999999999999999753
No 420
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=97.07 E-value=0.00029 Score=54.96 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 029421 8 CFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl 29 (193)
.++|+|++|||||||++.|.|-
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999975
No 421
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.07 E-value=0.00036 Score=56.77 Aligned_cols=24 Identities=33% Similarity=0.647 Sum_probs=22.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhhc
Q 029421 7 KCFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 7 e~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
.+++|+||+|||||||.+.|+..+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 479999999999999999999875
No 422
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=97.07 E-value=0.00033 Score=51.75 Aligned_cols=22 Identities=27% Similarity=0.714 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 029421 8 CFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl 29 (193)
.++|+|+.|+|||||++.+.+-
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999999875
No 423
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.06 E-value=0.0003 Score=51.97 Aligned_cols=23 Identities=30% Similarity=0.582 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 029421 8 CFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 48999999999999999998753
No 424
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=97.06 E-value=0.00031 Score=51.18 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 029421 8 CFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl 29 (193)
.++++|+.|+|||||++.+.+-
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999853
No 425
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.06 E-value=0.00031 Score=52.85 Aligned_cols=22 Identities=36% Similarity=0.607 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 029421 8 CFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl 29 (193)
.++|+|++|+|||||++.+.+-
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999998864
No 426
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=97.05 E-value=0.00035 Score=50.80 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 029421 8 CFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl 29 (193)
.++++|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 427
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=97.05 E-value=0.00032 Score=52.22 Aligned_cols=22 Identities=32% Similarity=0.613 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 029421 8 CFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl 29 (193)
-++|+|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999875
No 428
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=97.05 E-value=0.00027 Score=51.84 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=20.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhh
Q 029421 6 GKCFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 6 Ge~~~l~GpnGsGKSTLl~~i~gl 29 (193)
.-.++++|+.|+|||||++.+.+-
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 345899999999999999999864
No 429
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=97.05 E-value=0.00018 Score=53.75 Aligned_cols=22 Identities=32% Similarity=0.372 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 029421 8 CFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl 29 (193)
.++|+|++|+|||||++.++|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999764
No 430
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.04 E-value=0.00036 Score=51.76 Aligned_cols=22 Identities=36% Similarity=0.671 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 029421 8 CFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl 29 (193)
-++++|+.|+|||||++.+.+-
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999875
No 431
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=97.04 E-value=0.00036 Score=51.50 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 029421 8 CFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl 29 (193)
.++|+|+.|+|||||++.+.+-
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 432
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=97.04 E-value=0.00036 Score=51.63 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 029421 8 CFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
.++++|++|+|||||++.+.+-.
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 433
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=97.03 E-value=0.00033 Score=55.03 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 029421 8 CFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl 29 (193)
.++|+|++|||||||++.++|.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4899999999999999999985
No 434
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=97.03 E-value=0.00033 Score=52.33 Aligned_cols=23 Identities=35% Similarity=0.660 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 029421 8 CFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 435
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=97.03 E-value=0.00037 Score=51.24 Aligned_cols=23 Identities=35% Similarity=0.710 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 029421 8 CFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
.++++|+.|+|||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
No 436
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=97.03 E-value=0.00037 Score=51.88 Aligned_cols=22 Identities=27% Similarity=0.629 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 029421 8 CFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl 29 (193)
.++|+|+.|+|||||++.+.+-
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999875
No 437
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.03 E-value=0.00042 Score=53.19 Aligned_cols=25 Identities=36% Similarity=0.562 Sum_probs=22.3
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHH
Q 029421 3 AGAGKCFLVTGPPGVGKTTLIMRVL 27 (193)
Q Consensus 3 i~~Ge~~~l~GpnGsGKSTLl~~i~ 27 (193)
+++|+++.|.|++|+|||||+.-++
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 6789999999999999999987654
No 438
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.03 E-value=0.00039 Score=56.37 Aligned_cols=25 Identities=32% Similarity=0.480 Sum_probs=22.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421 6 GKCFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 6 Ge~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
+.+++|+||+|||||||...|+..+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4589999999999999999998765
No 439
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.02 E-value=0.00032 Score=56.65 Aligned_cols=27 Identities=19% Similarity=0.185 Sum_probs=24.5
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHhh
Q 029421 3 AGAGKCFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl 29 (193)
+++|+++.|.||+|||||||+..++.-
T Consensus 95 l~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 95 LESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999999988764
No 440
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=97.01 E-value=0.00041 Score=56.78 Aligned_cols=26 Identities=23% Similarity=0.475 Sum_probs=23.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421 5 AGKCFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
.+.+++|+||.|||||||...|+..+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 45689999999999999999999765
No 441
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.01 E-value=0.00039 Score=52.04 Aligned_cols=23 Identities=39% Similarity=0.699 Sum_probs=20.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhh
Q 029421 7 KCFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 7 e~~~l~GpnGsGKSTLl~~i~gl 29 (193)
-.++++|+.|+|||||++.+.+-
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999865
No 442
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=97.01 E-value=0.00023 Score=56.21 Aligned_cols=22 Identities=36% Similarity=0.674 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 029421 8 CFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl 29 (193)
.++|+|++|+|||||++.|.+.
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999998764
No 443
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=97.01 E-value=0.00029 Score=51.16 Aligned_cols=22 Identities=36% Similarity=0.460 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 029421 8 CFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl 29 (193)
.++++|++|+|||||++.+.+-
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999874
No 444
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.01 E-value=0.00034 Score=51.40 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=20.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHh
Q 029421 7 KCFLVTGPPGVGKTTLIMRVLE 28 (193)
Q Consensus 7 e~~~l~GpnGsGKSTLl~~i~g 28 (193)
-.++++|+.|+|||||++.+.+
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3589999999999999999985
No 445
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=97.00 E-value=0.00032 Score=52.37 Aligned_cols=22 Identities=41% Similarity=0.759 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 029421 8 CFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl 29 (193)
-++|+|+.|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4899999999999999999864
No 446
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=97.00 E-value=0.00037 Score=55.17 Aligned_cols=22 Identities=36% Similarity=0.471 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 029421 8 CFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl 29 (193)
.++|+|.+|||||||++.+.|.
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999886
No 447
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.99 E-value=0.00043 Score=51.10 Aligned_cols=22 Identities=27% Similarity=0.546 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 029421 8 CFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl 29 (193)
.++++|+.|+|||||++.+.+-
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 4899999999999999998864
No 448
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.99 E-value=0.00038 Score=52.45 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 029421 8 CFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
.++++|++|+|||||++.+.+-.
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998853
No 449
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.99 E-value=0.00067 Score=55.72 Aligned_cols=34 Identities=32% Similarity=0.368 Sum_probs=26.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEE
Q 029421 6 GKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKV 39 (193)
Q Consensus 6 Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~ 39 (193)
.-+++|+|+.|+|||||+..+++.+....-++.+
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~v 112 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLIERGHRVAV 112 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEE
Confidence 3479999999999999999999876543334444
No 450
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.98 E-value=0.0004 Score=52.06 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 029421 8 CFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl 29 (193)
.++++|+.|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999875
No 451
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=96.97 E-value=0.00032 Score=51.37 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 029421 8 CFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl 29 (193)
.++++|+.|+|||||++.+.+-
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 452
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.97 E-value=0.00024 Score=55.72 Aligned_cols=27 Identities=19% Similarity=0.149 Sum_probs=23.9
Q ss_pred cCCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421 4 GAGKCFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
.++.+++|.|+.||||||+.+.|+..+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 467899999999999999999998776
No 453
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=96.96 E-value=0.0004 Score=55.61 Aligned_cols=23 Identities=17% Similarity=0.372 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 029421 8 CFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
.++|+|+.|||||||++.|+|.-
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999874
No 454
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.96 E-value=0.0025 Score=57.30 Aligned_cols=147 Identities=14% Similarity=0.125 Sum_probs=0.0
Q ss_pred cCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecCCcccccccccCCCCCCCCCCc
Q 029421 4 GAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPLASINASSPESYRWPT 83 (193)
Q Consensus 4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 83 (193)
.+.-.+.|.||+|+|||++.+.++..+ ...-+.++...........+.+|. ......
T Consensus 486 ~p~~~~ll~G~~GtGKT~la~~la~~l--~~~~~~i~~s~~~~~~~~~~l~g~---------------------~~g~~g 542 (758)
T 1r6b_X 486 KPVGSFLFAGPTGVGKTEVTVQLSKAL--GIELLRFDMSEYMERHTVSRLIGA---------------------PPGYVG 542 (758)
T ss_dssp SCSEEEEEECSTTSSHHHHHHHHHHHH--TCEEEEEEGGGCSSSSCCSSSCCC---------------------CSCSHH
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHHh--cCCEEEEechhhcchhhHhhhcCC---------------------CCCCcC
Q ss_pred ccceeeehhhhhhhcccccccCCCCCEEEEecCCCccccccchHHHHHHHHh-----------CCCcEEEEecCCCCCCC
Q 029421 84 VGRYKVDVASFEAIALPELQVGADTDLFVIDEVGKMELFSSSFFPAVLRILE-----------SNIPVLASIPAPKSGRD 152 (193)
Q Consensus 84 ~~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp~~LD~~~~~~~~~ll~~l~-----------~g~tvl~~~~~~~~tHd 152 (193)
........+.+.... ..++++||...+.+.....+..++..-. .+..+|++ |+.
T Consensus 543 ~~~~~~l~~~~~~~~---------~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~t------sN~ 607 (758)
T 1r6b_X 543 FDQGGLLTDAVIKHP---------HAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMT------TNA 607 (758)
T ss_dssp HHHTTHHHHHHHHCS---------SEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEE------ECS
T ss_pred ccccchHHHHHHhCC---------CcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEe------cCc
Q ss_pred h--------------------------hHHHHHhcCCCcEEEEeCCCChhHHHHHHHHHHHHH
Q 029421 153 I--------------------------PAVARLRNHPGATIFTLSPGNRDSLKDNIYYQLTDA 189 (193)
Q Consensus 153 ~--------------------------~~~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 189 (193)
. ..-..+.+|.+.. +.+.+.+.+++.+-+...+.+.
T Consensus 608 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~-i~~~~l~~~~~~~i~~~~l~~~ 669 (758)
T 1r6b_X 608 GVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNI-IWFDHLSTDVIHQVVDKFIVEL 669 (758)
T ss_dssp SCC-----------------CHHHHHHHSCHHHHTTCSEE-EECCCCCHHHHHHHHHHHHHHH
T ss_pred chhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcc-eeeCCCCHHHHHHHHHHHHHHH
No 455
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=96.96 E-value=0.0003 Score=52.17 Aligned_cols=22 Identities=36% Similarity=0.669 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 029421 8 CFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl 29 (193)
-++++|+.|+|||||++.+.+-
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3899999999999999999764
No 456
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=96.94 E-value=0.00048 Score=51.73 Aligned_cols=24 Identities=33% Similarity=0.480 Sum_probs=21.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhhc
Q 029421 7 KCFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 7 e~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
-.++++|+.|+|||||++.+.+-.
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 358999999999999999998753
No 457
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=96.94 E-value=0.00036 Score=53.23 Aligned_cols=23 Identities=30% Similarity=0.632 Sum_probs=20.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhh
Q 029421 7 KCFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 7 e~~~l~GpnGsGKSTLl~~i~gl 29 (193)
-.++|+|++|+|||||++.+.+-
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999864
No 458
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=96.94 E-value=0.00044 Score=52.09 Aligned_cols=22 Identities=41% Similarity=0.661 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 029421 8 CFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl 29 (193)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999999864
No 459
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=96.94 E-value=0.0002 Score=54.11 Aligned_cols=23 Identities=22% Similarity=0.252 Sum_probs=20.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhh
Q 029421 7 KCFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 7 e~~~l~GpnGsGKSTLl~~i~gl 29 (193)
-.++|+|+.|+|||||++.+.|-
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTC
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Confidence 36899999999999999999875
No 460
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.93 E-value=0.00021 Score=55.96 Aligned_cols=24 Identities=46% Similarity=0.668 Sum_probs=21.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhhc
Q 029421 7 KCFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 7 e~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
.-+.|.||+|+|||||++.++...
T Consensus 45 ~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHHh
Confidence 347899999999999999999864
No 461
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.93 E-value=0.0005 Score=52.17 Aligned_cols=26 Identities=38% Similarity=0.590 Sum_probs=22.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhhccc
Q 029421 7 KCFLVTGPPGVGKTTLIMRVLESLKA 32 (193)
Q Consensus 7 e~~~l~GpnGsGKSTLl~~i~gl~~~ 32 (193)
-.++|+|+.|+|||||++.++.-...
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~~~ 64 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNLKD 64 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 46899999999999999999876543
No 462
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=96.93 E-value=0.00045 Score=51.31 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 029421 8 CFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl 29 (193)
.++++|+.|+|||||++.+.+-
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 463
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.93 E-value=0.00025 Score=52.27 Aligned_cols=23 Identities=35% Similarity=0.364 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 029421 8 CFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
.++++|+.|+|||||++.+.+-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998764
No 464
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=96.92 E-value=0.00048 Score=51.41 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 029421 8 CFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl 29 (193)
.++++|+.|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999875
No 465
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=96.91 E-value=0.00036 Score=51.55 Aligned_cols=22 Identities=32% Similarity=0.401 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 029421 8 CFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl 29 (193)
.++|+|+.|+|||||++.+.+-
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999764
No 466
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=96.91 E-value=0.00043 Score=52.29 Aligned_cols=22 Identities=32% Similarity=0.557 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 029421 8 CFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl 29 (193)
.++++|+.|+|||||++.+.+-
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 467
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=96.91 E-value=0.00052 Score=54.14 Aligned_cols=27 Identities=30% Similarity=0.473 Sum_probs=22.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhhcccC
Q 029421 7 KCFLVTGPPGVGKTTLIMRVLESLKAS 33 (193)
Q Consensus 7 e~~~l~GpnGsGKSTLl~~i~gl~~~~ 33 (193)
..++++|.+|+|||||++.+.|-....
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~ 126 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASS 126 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC--
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccc
Confidence 378999999999999999999875433
No 468
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.90 E-value=0.00053 Score=50.61 Aligned_cols=22 Identities=36% Similarity=0.480 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 029421 8 CFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl 29 (193)
.++++|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999875
No 469
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=96.89 E-value=0.00046 Score=51.30 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 029421 8 CFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
-++++|++|+|||||++.+.+-.
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 58999999999999999888753
No 470
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=96.89 E-value=0.0003 Score=51.35 Aligned_cols=22 Identities=41% Similarity=0.690 Sum_probs=9.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 029421 8 CFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl 29 (193)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999998754
No 471
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=96.88 E-value=0.0036 Score=50.39 Aligned_cols=67 Identities=12% Similarity=0.227 Sum_probs=40.1
Q ss_pred CCCCEEEEecCCCccccccchHHHHHHHHhC---CCcEEEEecCCCCCCChh-HHHHHhcCCCcEEEEeCCCChhHHHHH
Q 029421 106 ADTDLFVIDEVGKMELFSSSFFPAVLRILES---NIPVLASIPAPKSGRDIP-AVARLRNHPGATIFTLSPGNRDSLKDN 181 (193)
Q Consensus 106 ~~p~llllDEp~~LD~~~~~~~~~ll~~l~~---g~tvl~~~~~~~~tHd~~-~~~~~~d~~~~~~~~~~~~~~~~l~~~ 181 (193)
.+.+++|+||+..|...+ ...+++.+.+ ...+|++ +++.. ....+..| ++.+.+.+.+++.+.
T Consensus 81 ~~~kvviIdead~lt~~a---~naLLk~LEep~~~t~fIl~------t~~~~kl~~tI~SR----~~~f~~l~~~~i~~~ 147 (305)
T 2gno_A 81 YTRKYVIVHDCERMTQQA---ANAFLKALEEPPEYAVIVLN------TRRWHYLLPTIKSR----VFRVVVNVPKEFRDL 147 (305)
T ss_dssp SSSEEEEETTGGGBCHHH---HHHTHHHHHSCCTTEEEEEE------ESCGGGSCHHHHTT----SEEEECCCCHHHHHH
T ss_pred CCceEEEeccHHHhCHHH---HHHHHHHHhCCCCCeEEEEE------ECChHhChHHHHce----eEeCCCCCHHHHHHH
Confidence 467899999986555433 4556666665 4455666 55543 23455666 345555566666666
Q ss_pred HHHH
Q 029421 182 IYYQ 185 (193)
Q Consensus 182 ~~~~ 185 (193)
+.+.
T Consensus 148 L~~~ 151 (305)
T 2gno_A 148 VKEK 151 (305)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 472
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.88 E-value=0.00078 Score=54.57 Aligned_cols=26 Identities=35% Similarity=0.535 Sum_probs=23.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421 5 AGKCFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
+..-+.|.||+|+|||||++.++...
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCceEEEECCCCccHHHHHHHHHHHc
Confidence 45679999999999999999999875
No 473
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.88 E-value=0.00075 Score=54.61 Aligned_cols=25 Identities=32% Similarity=0.562 Sum_probs=22.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421 6 GKCFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 6 Ge~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
..+++|+||+|||||||...|+..+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4579999999999999999998765
No 474
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.87 E-value=0.00072 Score=54.00 Aligned_cols=26 Identities=19% Similarity=0.167 Sum_probs=22.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421 5 AGKCFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
....+.|.||+|+|||+|.+.|+..+
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34567888999999999999999876
No 475
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.86 E-value=0.00051 Score=55.62 Aligned_cols=24 Identities=29% Similarity=0.619 Sum_probs=22.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHh
Q 029421 5 AGKCFLVTGPPGVGKTTLIMRVLE 28 (193)
Q Consensus 5 ~Ge~~~l~GpnGsGKSTLl~~i~g 28 (193)
.|.-++|+|+||+||||+...+.+
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 477899999999999999999987
No 476
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.84 E-value=0.00064 Score=50.44 Aligned_cols=24 Identities=25% Similarity=0.524 Sum_probs=20.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHh
Q 029421 5 AGKCFLVTGPPGVGKTTLIMRVLE 28 (193)
Q Consensus 5 ~Ge~~~l~GpnGsGKSTLl~~i~g 28 (193)
.|.-+.|.|+||+|||||...+..
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 467799999999999999888765
No 477
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=96.83 E-value=0.00051 Score=54.44 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 029421 8 CFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
.++|+|..|+|||||++.+.|.-
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999864
No 478
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.83 E-value=0.001 Score=53.59 Aligned_cols=26 Identities=27% Similarity=0.454 Sum_probs=23.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhhcc
Q 029421 6 GKCFLVTGPPGVGKTTLIMRVLESLK 31 (193)
Q Consensus 6 Ge~~~l~GpnGsGKSTLl~~i~gl~~ 31 (193)
+..+.|.||+|+|||+|+++|+..+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999998754
No 479
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.83 E-value=0.00073 Score=57.17 Aligned_cols=31 Identities=19% Similarity=0.454 Sum_probs=27.2
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHhhcccC
Q 029421 3 AGAGKCFLVTGPPGVGKTTLIMRVLESLKAS 33 (193)
Q Consensus 3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~ 33 (193)
+.+|+++.|.|++|+|||||+..++......
T Consensus 197 l~~G~l~ii~G~pg~GKT~lal~ia~~~a~~ 227 (444)
T 2q6t_A 197 LGPGSLNIIAARPAMGKTAFALTIAQNAALK 227 (444)
T ss_dssp CCTTCEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh
Confidence 5789999999999999999999998776543
No 480
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=96.82 E-value=0.00065 Score=50.77 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 029421 8 CFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl 29 (193)
.++|+|+.|+|||||++.+.+-
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 4899999999999999999864
No 481
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=96.82 E-value=0.00059 Score=53.49 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 029421 8 CFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl 29 (193)
.++++|+.|+|||||++.+.|-
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
No 482
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=96.81 E-value=0.00043 Score=51.38 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=19.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHh
Q 029421 7 KCFLVTGPPGVGKTTLIMRVLE 28 (193)
Q Consensus 7 e~~~l~GpnGsGKSTLl~~i~g 28 (193)
-.++++|+.|+|||||++.+.+
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCS
T ss_pred cEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999999864
No 483
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.81 E-value=0.0008 Score=53.34 Aligned_cols=25 Identities=40% Similarity=0.611 Sum_probs=22.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421 6 GKCFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 6 Ge~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
+..+.|.||+|+||||+++.++..+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 5578999999999999999999876
No 484
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=96.80 E-value=0.00074 Score=51.23 Aligned_cols=22 Identities=32% Similarity=0.611 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 029421 8 CFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl 29 (193)
-++|+|+.|+|||||++.+.+-
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999999875
No 485
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.80 E-value=0.00077 Score=51.41 Aligned_cols=27 Identities=22% Similarity=0.517 Sum_probs=23.2
Q ss_pred cCCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421 4 GAGKCFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
++...+.+.||+|+||||+..+|+..+
T Consensus 56 Pkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 56 PKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp TTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 344579999999999999999998875
No 486
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=96.80 E-value=0.00067 Score=53.37 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 029421 8 CFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
.++++|++|+|||||++.+.|--
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999753
No 487
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=96.79 E-value=0.00067 Score=51.63 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 029421 8 CFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl 29 (193)
.++|+|++|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999864
No 488
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=96.79 E-value=0.0007 Score=50.72 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 029421 8 CFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl 29 (193)
.++++|+.|+|||||++.+.+-
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999853
No 489
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.78 E-value=0.00085 Score=55.00 Aligned_cols=26 Identities=35% Similarity=0.497 Sum_probs=23.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421 5 AGKCFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
++..+.|.||+|+||||+.+.|+..+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 45679999999999999999999886
No 490
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=96.77 E-value=0.0008 Score=50.89 Aligned_cols=22 Identities=18% Similarity=0.360 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 029421 8 CFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl 29 (193)
-++|+|+.|+|||||++.+.+-
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999999874
No 491
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.76 E-value=0.0015 Score=63.45 Aligned_cols=30 Identities=30% Similarity=0.510 Sum_probs=25.8
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHhhccc
Q 029421 3 AGAGKCFLVTGPPGVGKTTLIMRVLESLKA 32 (193)
Q Consensus 3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~ 32 (193)
+.+|.++.|.||+|+|||||...++.....
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLq~a~~~~~ 409 (1706)
T 3cmw_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAAAQR 409 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 578999999999999999998888765443
No 492
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.75 E-value=0.00061 Score=57.84 Aligned_cols=23 Identities=39% Similarity=0.644 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 029421 8 CFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
.+.|.||+|+|||||+++|+...
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHh
Confidence 48999999999999999999875
No 493
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=96.73 E-value=0.00096 Score=50.63 Aligned_cols=26 Identities=38% Similarity=0.551 Sum_probs=23.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhhcc
Q 029421 6 GKCFLVTGPPGVGKTTLIMRVLESLK 31 (193)
Q Consensus 6 Ge~~~l~GpnGsGKSTLl~~i~gl~~ 31 (193)
|.++++=|+-||||||+++.|+..+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 67899999999999999999998775
No 494
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=96.72 E-value=0.00084 Score=50.30 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 029421 8 CFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl 29 (193)
-++++|+.|+|||||++.+.+-
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999864
No 495
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=96.72 E-value=0.0003 Score=52.27 Aligned_cols=22 Identities=32% Similarity=0.367 Sum_probs=4.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 029421 8 CFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl 29 (193)
.++++|+.|+|||||++.+.+-
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999998765
No 496
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.71 E-value=0.0018 Score=50.48 Aligned_cols=28 Identities=25% Similarity=0.283 Sum_probs=23.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhhccc
Q 029421 5 AGKCFLVTGPPGVGKTTLIMRVLESLKA 32 (193)
Q Consensus 5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~~~ 32 (193)
.+..+.|.||+|+|||++.+.|+.....
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~~~~~~ 55 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLHYLSSR 55 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHTSTT
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHhcCc
Confidence 3567899999999999999999987543
No 497
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.71 E-value=0.0011 Score=53.43 Aligned_cols=25 Identities=36% Similarity=0.561 Sum_probs=22.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421 6 GKCFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 6 Ge~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
..-+.|.||+|+|||||++.++...
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH
Confidence 4569999999999999999999874
No 498
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.70 E-value=0.0014 Score=57.44 Aligned_cols=35 Identities=23% Similarity=0.365 Sum_probs=28.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEE
Q 029421 5 AGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKV 39 (193)
Q Consensus 5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~ 39 (193)
.+.++.|+||+|+||||+++.+...+......|.+
T Consensus 203 ~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~ 237 (574)
T 3e1s_A 203 GHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGL 237 (574)
T ss_dssp TCSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred hCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 46799999999999999999999887655445544
No 499
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.70 E-value=0.0013 Score=54.02 Aligned_cols=26 Identities=35% Similarity=0.498 Sum_probs=23.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421 5 AGKCFLVTGPPGVGKTTLIMRVLESL 30 (193)
Q Consensus 5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~ 30 (193)
....+.|.||+|+|||||++.++...
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc
Confidence 45679999999999999999999764
No 500
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=96.69 E-value=0.00029 Score=53.09 Aligned_cols=22 Identities=50% Similarity=0.667 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 029421 8 CFLVTGPPGVGKTTLIMRVLES 29 (193)
Q Consensus 8 ~~~l~GpnGsGKSTLl~~i~gl 29 (193)
.++|+|+.|+|||||++.+.+-
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999988753
Done!