Query 029423
Match_columns 193
No_of_seqs 132 out of 307
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 12:40:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029423.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029423hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1271 Methyltransferases [Ge 100.0 4.5E-31 9.7E-36 224.7 8.4 94 77-191 1-94 (227)
2 TIGR03840 TMPT_Se_Te thiopurin 98.0 7.9E-06 1.7E-10 69.1 4.7 26 165-190 35-60 (213)
3 PRK13255 thiopurine S-methyltr 97.8 2.6E-05 5.7E-10 66.2 4.9 62 94-190 2-63 (218)
4 KOG2352 Predicted spermine/spe 97.6 2.4E-05 5.2E-10 74.6 2.4 64 89-190 7-74 (482)
5 PF07757 AdoMet_MTase: Predict 97.6 3.7E-05 8.1E-10 60.9 2.9 25 165-189 59-83 (112)
6 PLN02585 magnesium protoporphy 97.5 0.00018 3.9E-09 64.7 5.4 24 165-188 145-168 (315)
7 TIGR02021 BchM-ChlM magnesium 97.4 0.00012 2.5E-09 60.5 3.2 23 165-187 56-78 (219)
8 KOG2361 Predicted methyltransf 97.4 0.0001 2.2E-09 65.6 2.8 58 94-185 35-92 (264)
9 PF05724 TPMT: Thiopurine S-me 97.4 0.00016 3.4E-09 61.7 3.6 61 94-189 2-62 (218)
10 PRK13256 thiopurine S-methyltr 97.3 0.00038 8.2E-09 60.3 5.6 61 94-189 8-68 (226)
11 PRK07580 Mg-protoporphyrin IX 97.3 0.00025 5.3E-09 58.0 3.9 24 165-188 64-87 (230)
12 PF08003 Methyltransf_9: Prote 97.3 0.00024 5.1E-09 64.8 3.9 25 163-187 114-138 (315)
13 KOG1270 Methyltransferases [Co 97.1 0.00024 5.2E-09 63.9 2.4 27 163-189 88-114 (282)
14 COG2227 UbiG 2-polyprenyl-3-me 97.0 0.00045 9.7E-09 61.0 2.7 27 163-189 58-84 (243)
15 PRK15068 tRNA mo(5)U34 methylt 96.9 0.00087 1.9E-08 60.0 3.8 25 164-188 122-146 (322)
16 TIGR03587 Pse_Me-ase pseudamin 96.6 0.0028 6.1E-08 53.1 4.2 21 165-185 44-64 (204)
17 PLN02396 hexaprenyldihydroxybe 96.5 0.0019 4.2E-08 58.3 3.0 26 164-189 131-156 (322)
18 PF06325 PrmA: Ribosomal prote 96.4 0.0022 4.8E-08 57.5 2.8 25 164-188 161-185 (295)
19 COG2264 PrmA Ribosomal protein 96.4 0.003 6.5E-08 57.2 3.7 26 163-188 161-186 (300)
20 PRK12335 tellurite resistance 96.4 0.0026 5.6E-08 55.3 3.0 24 166-189 122-145 (287)
21 TIGR02072 BioC biotin biosynth 96.2 0.0036 7.8E-08 50.6 2.9 25 165-189 35-59 (240)
22 TIGR00452 methyltransferase, p 96.2 0.0033 7.1E-08 56.7 2.9 25 164-188 121-145 (314)
23 PRK11036 putative S-adenosyl-L 96.2 0.0031 6.6E-08 53.6 2.5 25 165-189 45-69 (255)
24 PRK10258 biotin biosynthesis p 96.2 0.0039 8.5E-08 52.3 2.9 24 165-188 43-66 (251)
25 PRK00517 prmA ribosomal protei 96.0 0.0048 1E-07 52.6 2.8 25 164-188 119-143 (250)
26 PF05175 MTS: Methyltransferas 96.0 0.0051 1.1E-07 49.5 2.7 24 165-188 32-55 (170)
27 TIGR02469 CbiT precorrin-6Y C5 96.0 0.0053 1.2E-07 44.7 2.5 21 165-185 20-40 (124)
28 COG2813 RsmC 16S RNA G1207 met 95.9 0.005 1.1E-07 55.9 2.5 22 165-186 159-180 (300)
29 TIGR02752 MenG_heptapren 2-hep 95.8 0.0063 1.4E-07 50.2 2.6 21 165-185 46-66 (231)
30 PRK15001 SAM-dependent 23S rib 95.8 0.0098 2.1E-07 55.1 4.1 21 166-186 230-250 (378)
31 TIGR03534 RF_mod_PrmC protein- 95.8 0.0042 9.2E-08 51.3 1.5 20 166-185 89-108 (251)
32 TIGR00740 methyltransferase, p 95.7 0.0072 1.6E-07 50.6 2.6 21 165-185 54-74 (239)
33 PRK14967 putative methyltransf 95.7 0.0074 1.6E-07 50.4 2.7 23 165-187 37-59 (223)
34 PRK00121 trmB tRNA (guanine-N( 95.7 0.0069 1.5E-07 50.2 2.4 21 165-185 41-61 (202)
35 TIGR00406 prmA ribosomal prote 95.7 0.0078 1.7E-07 52.7 2.9 24 164-187 159-182 (288)
36 PRK05785 hypothetical protein; 95.7 0.0081 1.8E-07 50.9 2.7 21 165-185 52-72 (226)
37 PRK06202 hypothetical protein; 95.6 0.0088 1.9E-07 49.9 2.6 20 165-184 61-80 (232)
38 PRK09328 N5-glutamine S-adenos 95.5 0.0059 1.3E-07 51.5 1.3 22 165-186 109-130 (275)
39 PRK01683 trans-aconitate 2-met 95.5 0.0091 2E-07 50.2 2.4 21 165-185 32-52 (258)
40 PRK08287 cobalt-precorrin-6Y C 95.5 0.011 2.3E-07 47.8 2.6 23 165-187 32-54 (187)
41 TIGR00138 gidB 16S rRNA methyl 95.4 0.0096 2.1E-07 49.0 2.1 22 165-186 43-64 (181)
42 PRK04148 hypothetical protein; 95.4 0.023 4.9E-07 46.0 4.2 25 165-189 17-42 (134)
43 PLN02244 tocopherol O-methyltr 95.3 0.013 2.7E-07 52.6 2.8 22 164-185 118-139 (340)
44 PRK15451 tRNA cmo(5)U34 methyl 95.3 0.013 2.7E-07 49.9 2.6 20 165-184 57-76 (247)
45 PRK05134 bifunctional 3-demeth 95.2 0.027 5.7E-07 46.6 4.2 23 165-187 49-71 (233)
46 PRK11088 rrmA 23S rRNA methylt 95.2 0.014 3E-07 50.3 2.5 21 165-185 86-106 (272)
47 COG4123 Predicted O-methyltran 95.1 0.013 2.7E-07 51.9 2.2 21 165-185 45-65 (248)
48 PRK03522 rumB 23S rRNA methylu 95.1 0.025 5.3E-07 50.1 3.9 23 165-187 174-196 (315)
49 PRK14966 unknown domain/N5-glu 95.0 0.01 2.3E-07 56.0 1.3 21 165-185 252-272 (423)
50 PF02353 CMAS: Mycolic acid cy 95.0 0.021 4.6E-07 50.3 3.1 25 164-188 62-87 (273)
51 TIGR00438 rrmJ cell division p 94.8 0.021 4.5E-07 46.3 2.5 23 164-186 32-54 (188)
52 PLN02233 ubiquinone biosynthes 94.8 0.02 4.4E-07 49.4 2.5 21 165-185 74-94 (261)
53 PRK00216 ubiE ubiquinone/menaq 94.8 0.022 4.7E-07 46.2 2.5 22 165-186 52-73 (239)
54 PRK00274 ksgA 16S ribosomal RN 94.7 0.022 4.7E-07 49.5 2.6 23 165-187 43-65 (272)
55 TIGR01983 UbiG ubiquinone bios 94.7 0.028 6E-07 45.9 3.0 25 164-188 45-69 (224)
56 TIGR00080 pimt protein-L-isoas 94.7 0.022 4.8E-07 47.2 2.4 23 164-186 77-99 (215)
57 PRK11188 rrmJ 23S rRNA methylt 94.6 0.025 5.4E-07 47.5 2.6 22 165-186 52-73 (209)
58 PRK13944 protein-L-isoaspartat 94.6 0.026 5.6E-07 46.8 2.6 21 165-185 73-93 (205)
59 TIGR00478 tly hemolysin TlyA f 94.5 0.027 5.9E-07 48.8 2.6 24 164-187 75-98 (228)
60 COG2263 Predicted RNA methylas 94.5 0.028 6.2E-07 48.5 2.6 23 165-187 46-68 (198)
61 PF13679 Methyltransf_32: Meth 94.4 0.051 1.1E-06 42.6 3.8 21 164-184 25-45 (141)
62 PRK00107 gidB 16S rRNA methylt 94.4 0.031 6.7E-07 46.6 2.7 21 165-185 46-66 (187)
63 TIGR01934 MenG_MenH_UbiE ubiqu 94.4 0.03 6.6E-07 44.9 2.5 23 165-187 40-62 (223)
64 PRK07402 precorrin-6B methylas 94.4 0.032 6.8E-07 45.5 2.6 21 165-185 41-61 (196)
65 PRK09489 rsmC 16S ribosomal RN 94.3 0.025 5.5E-07 51.3 2.1 21 166-186 198-218 (342)
66 PRK00377 cbiT cobalt-precorrin 94.2 0.036 7.7E-07 45.5 2.6 22 164-185 40-61 (198)
67 PLN02336 phosphoethanolamine N 94.1 0.036 7.7E-07 51.1 2.6 23 165-187 38-60 (475)
68 PRK14121 tRNA (guanine-N(7)-)- 94.0 0.037 8E-07 51.8 2.6 21 165-185 123-143 (390)
69 PRK13168 rumA 23S rRNA m(5)U19 94.0 0.067 1.5E-06 49.6 4.3 23 165-187 298-320 (443)
70 TIGR00095 RNA methyltransferas 93.8 0.049 1.1E-06 45.2 2.7 24 165-188 50-73 (189)
71 PRK04266 fibrillarin; Provisio 93.7 0.05 1.1E-06 46.7 2.6 22 164-185 72-93 (226)
72 PRK10909 rsmD 16S rRNA m(2)G96 93.6 0.088 1.9E-06 44.5 3.9 23 165-187 54-76 (199)
73 PRK11705 cyclopropane fatty ac 93.5 0.051 1.1E-06 50.0 2.5 24 164-187 167-191 (383)
74 PTZ00098 phosphoethanolamine N 93.4 0.059 1.3E-06 46.6 2.6 22 164-185 52-73 (263)
75 PRK11727 23S rRNA mA1618 methy 93.4 0.1 2.2E-06 47.5 4.1 22 164-185 114-135 (321)
76 TIGR02716 C20_methyl_CrtF C-20 93.4 0.054 1.2E-06 47.2 2.3 22 165-186 150-171 (306)
77 PRK00312 pcm protein-L-isoaspa 93.3 0.061 1.3E-06 44.3 2.5 23 164-186 78-100 (212)
78 COG4976 Predicted methyltransf 93.3 0.035 7.6E-07 50.0 1.1 20 166-185 127-146 (287)
79 PLN02336 phosphoethanolamine N 93.1 0.068 1.5E-06 49.2 2.7 22 164-185 266-287 (475)
80 TIGR02085 meth_trns_rumB 23S r 93.0 0.14 3.1E-06 46.6 4.5 22 166-187 235-256 (374)
81 PRK11873 arsM arsenite S-adeno 92.9 0.08 1.7E-06 45.1 2.7 22 164-185 77-98 (272)
82 TIGR03704 PrmC_rel_meth putati 92.7 0.076 1.6E-06 45.9 2.3 20 166-185 88-107 (251)
83 COG2230 Cfa Cyclopropane fatty 92.6 0.078 1.7E-06 47.8 2.3 23 163-185 71-93 (283)
84 PF01209 Ubie_methyltran: ubiE 92.6 0.062 1.4E-06 46.2 1.6 22 164-185 47-68 (233)
85 TIGR03438 probable methyltrans 92.6 0.077 1.7E-06 46.7 2.2 21 165-185 64-84 (301)
86 TIGR00536 hemK_fam HemK family 92.5 0.073 1.6E-06 46.3 2.0 21 166-186 116-136 (284)
87 PRK13942 protein-L-isoaspartat 92.5 0.097 2.1E-06 43.8 2.6 21 165-185 77-97 (212)
88 TIGR00479 rumA 23S rRNA (uraci 92.4 0.18 3.9E-06 46.3 4.4 23 165-187 293-315 (431)
89 PTZ00338 dimethyladenosine tra 92.3 0.1 2.2E-06 46.6 2.6 22 165-186 37-58 (294)
90 TIGR01177 conserved hypothetic 92.3 0.18 4E-06 44.7 4.2 23 165-187 183-205 (329)
91 TIGR03533 L3_gln_methyl protei 92.3 0.1 2.3E-06 45.8 2.6 22 165-186 122-143 (284)
92 COG0220 Predicted S-adenosylme 92.3 0.087 1.9E-06 45.7 2.1 20 166-185 50-69 (227)
93 KOG1541 Predicted protein carb 92.0 0.055 1.2E-06 48.4 0.5 23 165-187 51-73 (270)
94 PLN02490 MPBQ/MSBQ methyltrans 91.9 0.13 2.7E-06 47.2 2.7 21 165-185 114-134 (340)
95 COG2890 HemK Methylase of poly 91.9 0.1 2.2E-06 46.1 2.1 20 167-186 113-132 (280)
96 smart00138 MeTrc Methyltransfe 91.7 0.23 4.9E-06 43.2 4.1 21 165-185 100-124 (264)
97 PHA03412 putative methyltransf 91.7 0.092 2E-06 46.5 1.6 21 165-185 50-70 (241)
98 PRK06922 hypothetical protein; 91.7 0.12 2.5E-06 51.7 2.5 21 165-185 419-439 (677)
99 PRK11805 N5-glutamine S-adenos 91.5 0.11 2.5E-06 46.2 2.0 20 166-185 135-154 (307)
100 KOG1499 Protein arginine N-met 91.2 0.14 3.1E-06 47.5 2.4 27 163-189 59-85 (346)
101 COG2226 UbiE Methylase involve 90.9 0.17 3.8E-06 44.4 2.5 22 164-185 51-72 (238)
102 PF05401 NodS: Nodulation prot 90.6 0.14 3E-06 44.4 1.6 20 166-185 45-64 (201)
103 PHA03411 putative methyltransf 90.4 0.19 4.2E-06 45.3 2.5 21 165-185 65-85 (279)
104 COG2242 CobL Precorrin-6B meth 90.4 0.25 5.4E-06 42.4 3.0 28 163-190 33-60 (187)
105 PRK13943 protein-L-isoaspartat 90.4 0.22 4.7E-06 45.2 2.8 21 165-185 81-101 (322)
106 PRK01544 bifunctional N5-gluta 90.3 0.2 4.3E-06 47.8 2.5 22 164-185 347-368 (506)
107 PRK01544 bifunctional N5-gluta 89.5 0.22 4.7E-06 47.5 2.1 21 165-185 139-159 (506)
108 PF10294 Methyltransf_16: Puta 88.8 0.3 6.5E-06 39.8 2.2 23 163-185 44-66 (173)
109 PRK10901 16S rRNA methyltransf 88.7 0.46 1E-05 43.9 3.6 23 164-186 244-266 (427)
110 PRK00811 spermidine synthase; 88.3 0.37 8E-06 42.3 2.6 21 165-185 77-97 (283)
111 PF01135 PCMT: Protein-L-isoas 87.9 0.4 8.6E-06 40.9 2.4 22 164-185 72-93 (209)
112 PRK04457 spermidine synthase; 87.8 0.39 8.5E-06 41.8 2.4 20 166-185 68-87 (262)
113 PLN02672 methionine S-methyltr 87.4 0.38 8.2E-06 50.4 2.4 22 165-186 119-140 (1082)
114 TIGR02143 trmA_only tRNA (urac 87.3 0.41 8.8E-06 43.5 2.3 20 167-186 200-219 (353)
115 PTZ00146 fibrillarin; Provisio 87.2 0.47 1E-05 43.0 2.6 22 164-185 132-153 (293)
116 PF03291 Pox_MCEL: mRNA cappin 86.8 0.94 2E-05 41.3 4.4 47 125-186 38-84 (331)
117 TIGR00417 speE spermidine synt 85.9 0.66 1.4E-05 40.2 2.8 21 166-186 74-94 (270)
118 KOG2798 Putative trehalase [Ca 85.2 1.1 2.4E-05 41.9 4.0 28 163-190 149-176 (369)
119 PF00891 Methyltransf_2: O-met 85.1 0.61 1.3E-05 39.0 2.1 20 166-185 102-121 (241)
120 COG0500 SmtA SAM-dependent met 85.0 0.5 1.1E-05 31.4 1.3 17 168-184 52-70 (257)
121 PLN02366 spermidine synthase 84.7 0.74 1.6E-05 41.5 2.6 21 165-185 92-112 (308)
122 PF02384 N6_Mtase: N-6 DNA Met 83.8 1.5 3.2E-05 38.1 4.0 20 165-184 47-66 (311)
123 PRK05031 tRNA (uracil-5-)-meth 83.7 0.75 1.6E-05 41.9 2.2 20 166-185 208-227 (362)
124 PRK14902 16S rRNA methyltransf 83.2 1.4 3.1E-05 40.8 3.9 21 165-185 251-271 (444)
125 PF05148 Methyltransf_8: Hypot 82.8 1.2 2.5E-05 39.3 2.9 23 165-188 73-95 (219)
126 PF03141 Methyltransf_29: Puta 82.4 0.7 1.5E-05 45.0 1.6 21 167-187 120-140 (506)
127 PF07942 N2227: N2227-like pro 82.3 0.88 1.9E-05 40.8 2.1 28 163-190 55-82 (270)
128 PRK11783 rlmL 23S rRNA m(2)G24 82.1 1 2.2E-05 44.7 2.6 24 165-188 539-562 (702)
129 PF08123 DOT1: Histone methyla 81.3 2.1 4.5E-05 36.5 3.9 20 165-184 43-62 (205)
130 KOG2899 Predicted methyltransf 81.2 1.1 2.3E-05 40.8 2.2 21 165-185 59-79 (288)
131 PRK03612 spermidine synthase; 81.2 1.3 2.7E-05 42.5 2.8 22 165-186 298-319 (521)
132 PRK15128 23S rRNA m(5)C1962 me 80.4 1.4 3E-05 41.0 2.7 23 165-187 221-243 (396)
133 TIGR00446 nop2p NOL1/NOP2/sun 80.3 1.4 3E-05 38.1 2.6 21 165-185 72-92 (264)
134 TIGR02987 met_A_Alw26 type II 80.1 1.1 2.4E-05 42.3 2.0 21 165-185 32-52 (524)
135 COG2518 Pcm Protein-L-isoaspar 80.0 1.5 3.3E-05 38.1 2.6 22 164-185 72-93 (209)
136 KOG3420 Predicted RNA methylas 79.7 0.79 1.7E-05 39.1 0.8 20 164-183 48-67 (185)
137 TIGR00563 rsmB ribosomal RNA s 79.2 2.4 5.2E-05 39.2 3.9 21 165-185 239-259 (426)
138 COG2265 TrmA SAM-dependent met 79.0 2.1 4.5E-05 40.5 3.5 26 164-189 293-318 (432)
139 PF05958 tRNA_U5-meth_tr: tRNA 78.5 2 4.3E-05 39.0 3.1 20 167-186 199-218 (352)
140 KOG1500 Protein arginine N-met 78.2 1.7 3.6E-05 41.6 2.5 26 163-188 176-201 (517)
141 KOG3010 Methyltransferase [Gen 78.1 1.3 2.8E-05 39.9 1.7 19 167-185 36-54 (261)
142 PF05185 PRMT5: PRMT5 arginine 77.7 1.8 3.9E-05 41.0 2.7 22 165-186 187-208 (448)
143 KOG3115 Methyltransferase-like 75.2 1.4 3.1E-05 39.2 1.2 21 165-185 61-81 (249)
144 PRK14904 16S rRNA methyltransf 74.4 2.6 5.6E-05 39.3 2.7 21 164-184 250-270 (445)
145 KOG2904 Predicted methyltransf 73.2 2.3 5E-05 39.3 2.0 21 165-185 149-169 (328)
146 PF08704 GCD14: tRNA methyltra 69.3 3.8 8.2E-05 36.1 2.5 23 163-185 39-61 (247)
147 PRK14901 16S rRNA methyltransf 68.8 3.9 8.4E-05 38.0 2.5 22 164-185 252-273 (434)
148 KOG1661 Protein-L-isoaspartate 68.2 8 0.00017 34.5 4.2 41 118-184 61-102 (237)
149 PRK01581 speE spermidine synth 67.8 4.3 9.3E-05 38.2 2.6 21 165-185 151-171 (374)
150 PLN02781 Probable caffeoyl-CoA 67.6 4.4 9.5E-05 34.6 2.5 20 165-184 69-88 (234)
151 PRK14903 16S rRNA methyltransf 67.3 8 0.00017 36.2 4.3 21 165-185 238-258 (431)
152 KOG1331 Predicted methyltransf 67.1 2.5 5.3E-05 38.7 0.9 16 165-180 46-61 (293)
153 PF02527 GidB: rRNA small subu 65.7 4 8.6E-05 34.3 1.8 17 167-183 51-67 (184)
154 PRK04338 N(2),N(2)-dimethylgua 65.2 4.3 9.3E-05 37.6 2.1 20 166-185 59-78 (382)
155 PF03602 Cons_hypoth95: Conser 65.2 4.9 0.00011 33.4 2.2 24 165-188 43-66 (183)
156 PF07091 FmrO: Ribosomal RNA m 61.0 5.2 0.00011 35.8 1.7 15 165-179 106-120 (251)
157 COG2519 GCD14 tRNA(1-methylade 60.4 6.6 0.00014 35.3 2.3 22 163-184 93-114 (256)
158 KOG2940 Predicted methyltransf 57.9 7 0.00015 35.8 2.0 23 165-187 73-95 (325)
159 PLN02668 indole-3-acetate carb 56.2 6.8 0.00015 36.9 1.7 18 165-182 64-81 (386)
160 KOG3191 Predicted N6-DNA-methy 55.9 8.4 0.00018 33.8 2.1 20 166-185 45-64 (209)
161 PRK11760 putative 23S rRNA C24 55.7 10 0.00022 35.6 2.8 26 163-188 210-235 (357)
162 PLN03075 nicotianamine synthas 55.1 10 0.00023 34.4 2.7 12 165-176 124-135 (296)
163 KOG1501 Arginine N-methyltrans 55.0 7.9 0.00017 38.2 2.0 21 166-186 68-88 (636)
164 KOG3045 Predicted RNA methylas 53.7 10 0.00022 35.0 2.4 17 164-180 180-196 (325)
165 COG0357 GidB Predicted S-adeno 51.5 9.1 0.0002 33.3 1.6 19 165-183 68-86 (215)
166 PF09243 Rsm22: Mitochondrial 46.4 17 0.00037 31.9 2.5 20 165-184 34-53 (274)
167 KOG2920 Predicted methyltransf 46.2 10 0.00023 34.5 1.2 23 164-186 116-138 (282)
168 KOG2915 tRNA(1-methyladenosine 44.6 19 0.00041 33.3 2.6 28 163-190 104-132 (314)
169 KOG1882 Transcriptional regula 44.5 8.5 0.00018 35.0 0.4 15 166-180 241-255 (293)
170 KOG0820 Ribosomal RNA adenine 43.1 21 0.00045 33.1 2.6 27 163-189 57-83 (315)
171 PF05971 Methyltransf_10: Prot 41.5 20 0.00043 32.8 2.2 13 165-177 103-115 (299)
172 PF11968 DUF3321: Putative met 40.7 26 0.00056 30.9 2.8 34 123-176 30-63 (219)
173 PLN02476 O-methyltransferase 38.9 25 0.00054 31.6 2.4 20 165-184 119-138 (278)
174 KOG1975 mRNA cap methyltransfe 38.6 28 0.0006 33.1 2.8 43 125-188 99-141 (389)
175 PLN02823 spermine synthase 38.3 26 0.00057 32.1 2.6 20 166-185 105-124 (336)
176 PRK07877 hypothetical protein; 37.8 36 0.00078 34.6 3.6 24 164-187 106-130 (722)
177 KOG1540 Ubiquinone biosynthesi 36.8 27 0.00059 32.1 2.4 22 164-185 100-121 (296)
178 PRK11783 rlmL 23S rRNA m(2)G24 35.9 23 0.0005 35.3 1.9 20 165-184 191-210 (702)
179 PF11278 DUF3079: Protein of u 35.5 12 0.00026 26.2 -0.1 11 167-177 24-34 (52)
180 PF01596 Methyltransf_3: O-met 35.5 30 0.00065 29.4 2.3 20 166-185 47-66 (205)
181 PF01234 NNMT_PNMT_TEMT: NNMT/ 34.6 31 0.00066 30.7 2.3 13 165-177 57-69 (256)
182 TIGR03439 methyl_EasF probable 34.5 34 0.00074 31.2 2.6 22 165-186 77-102 (319)
183 KOG3790 Uncharacterized conser 33.6 16 0.00036 35.7 0.5 22 166-187 213-234 (529)
184 PRK10742 putative methyltransf 33.2 35 0.00076 30.5 2.5 26 166-191 90-115 (250)
185 KOG4300 Predicted methyltransf 32.0 22 0.00048 31.9 1.0 14 165-178 77-90 (252)
186 COG0742 N6-adenine-specific me 31.1 43 0.00094 28.7 2.6 25 164-188 43-67 (187)
187 PF05219 DREV: DREV methyltran 29.7 41 0.00088 30.5 2.3 20 165-184 95-114 (265)
188 COG3897 Predicted methyltransf 29.6 37 0.00079 30.1 1.9 23 165-187 80-102 (218)
189 TIGR00308 TRM1 tRNA(guanine-26 29.6 37 0.0008 31.6 2.1 20 166-185 46-65 (374)
190 PRK14851 hypothetical protein; 28.6 50 0.0011 33.3 2.9 24 164-187 42-67 (679)
191 KOG3987 Uncharacterized conser 28.1 29 0.00064 31.4 1.1 19 164-182 112-130 (288)
192 PF02475 Met_10: Met-10+ like- 27.3 39 0.00084 28.8 1.7 20 165-184 102-121 (200)
193 PF04672 Methyltransf_19: S-ad 25.5 41 0.00088 30.4 1.5 9 167-175 71-79 (267)
194 PRK14192 bifunctional 5,10-met 22.9 1.3E+02 0.0028 26.9 4.2 29 164-192 158-189 (283)
195 KOG3790 Uncharacterized conser 20.5 53 0.0011 32.3 1.3 22 164-185 318-339 (529)
No 1
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.97 E-value=4.5e-31 Score=224.69 Aligned_cols=94 Identities=50% Similarity=0.886 Sum_probs=82.0
Q ss_pred CCCCCCCCCCCCCCCCCcHHHHHHHHhhhhhhhccCCCCCceecCCchHHHHHHHHHhhhhhhccCcccccccccCCCcc
Q 029423 77 NSDKEEPDPEGMASMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPV 156 (193)
Q Consensus 77 ~s~k~e~~~el~pS~LGtkeYWD~~Y~~EL~NF~e~gD~GEiWFGed~~d~vv~Wlk~~~~~i~q~~ip~~~d~~~~e~~ 156 (193)
+||++++ .++..|+||||+|||+.|++|+.||.+|||+||+|||++++.+|++||+.++. +.+ + +
T Consensus 1 ~sdm~~~-adl~~S~LGtK~yWD~~Y~~El~Nfr~hgd~GEvWFg~~ae~riv~wl~d~~~-~~r--v-----------~ 65 (227)
T KOG1271|consen 1 SSDMSEP-ADLGQSKLGTKSYWDAAYELELTNFREHGDEGEVWFGEDAEERIVDWLKDLIV-ISR--V-----------S 65 (227)
T ss_pred CCccccc-ccccccccchHHHHHHHHHHHHhhcccCCCccceecCCcHHHHHHHHHHhhhh-hhh--h-----------c
Confidence 4788888 88999999999999999999999999999999999999999999999998763 221 1 1
Q ss_pred ccccccCCCCceeEeeccChHhHHHHHHCCCcccc
Q 029423 157 EENDKYLSSWSVLDIGTGNGLLLQELSKQGYTLRF 191 (193)
Q Consensus 157 e~~~k~~~~~sILDLGCGNG~LL~eLak~GFs~~l 191 (193)
+ ...+|||||||||+||++|++.||++.|
T Consensus 66 ----~--~A~~VlDLGtGNG~~L~~L~~egf~~~L 94 (227)
T KOG1271|consen 66 ----K--QADRVLDLGTGNGHLLFQLAKEGFQSKL 94 (227)
T ss_pred ----c--cccceeeccCCchHHHHHHHHhcCCCCc
Confidence 1 1238999999999999999999999864
No 2
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=97.99 E-value=7.9e-06 Score=69.13 Aligned_cols=26 Identities=27% Similarity=0.152 Sum_probs=23.4
Q ss_pred CCceeEeeccChHhHHHHHHCCCccc
Q 029423 165 SWSVLDIGTGNGLLLQELSKQGYTLR 190 (193)
Q Consensus 165 ~~sILDLGCGNG~LL~eLak~GFs~~ 190 (193)
..+|||+|||.|.-..-|+++||...
T Consensus 35 ~~rvLd~GCG~G~da~~LA~~G~~V~ 60 (213)
T TIGR03840 35 GARVFVPLCGKSLDLAWLAEQGHRVL 60 (213)
T ss_pred CCeEEEeCCCchhHHHHHHhCCCeEE
Confidence 45899999999999999999999753
No 3
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=97.82 E-value=2.6e-05 Score=66.20 Aligned_cols=62 Identities=18% Similarity=0.280 Sum_probs=42.8
Q ss_pred cHHHHHHHHhhhhhhhccCCCCCceecCCchHHHHHHHHHhhhhhhccCcccccccccCCCccccccccCCCCceeEeec
Q 029423 94 LQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGT 173 (193)
Q Consensus 94 tkeYWD~~Y~~EL~NF~e~gD~GEiWFGed~~d~vv~Wlk~~~~~i~q~~ip~~~d~~~~e~~e~~~k~~~~~sILDLGC 173 (193)
+.++||++|.+.... |=+...-..+++|+..+. + .+..+|||+||
T Consensus 2 ~~~~Wd~rw~~~~~~----------~~~~~p~~~L~~~~~~~~-------~------------------~~~~rvL~~gC 46 (218)
T PRK13255 2 DPDFWHEKWAENQIG----------FHQEEVNPLLQKYWPALA-------L------------------PAGSRVLVPLC 46 (218)
T ss_pred CHhHHHHHHcCCCCC----------CCCCCCCHHHHHHHHhhC-------C------------------CCCCeEEEeCC
Confidence 367999999875433 333333345667664321 1 12458999999
Q ss_pred cChHhHHHHHHCCCccc
Q 029423 174 GNGLLLQELSKQGYTLR 190 (193)
Q Consensus 174 GNG~LL~eLak~GFs~~ 190 (193)
|.|.-+.-|+++||...
T Consensus 47 G~G~da~~LA~~G~~V~ 63 (218)
T PRK13255 47 GKSLDMLWLAEQGHEVL 63 (218)
T ss_pred CChHhHHHHHhCCCeEE
Confidence 99999999999999753
No 4
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.65 E-value=2.4e-05 Score=74.57 Aligned_cols=64 Identities=27% Similarity=0.566 Sum_probs=48.4
Q ss_pred CCCCCcHHHHHHHHhhh-hhhhccCCCCCceecCCchH--HHHHHHHHhhhhhhccCcccccccccCCCccccccccCCC
Q 029423 89 ASMLGLQSYWDSAYADE-LANFREHGHAGEVWFGADVM--DVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSS 165 (193)
Q Consensus 89 pS~LGtkeYWD~~Y~~E-L~NF~e~gD~GEiWFGed~~--d~vv~Wlk~~~~~i~q~~ip~~~d~~~~e~~e~~~k~~~~ 165 (193)
.-.+++..|||.+|... ..+| +||++... ..|..+++ +.
T Consensus 7 ~~~~~s~~~wd~rf~~rg~~~~--------ewY~~~l~l~~~i~~~~~------------------------------p~ 48 (482)
T KOG2352|consen 7 QLSFGSVVYWDKRFQPRGSDPF--------EWYGALLSLSGSIMKYLS------------------------------PS 48 (482)
T ss_pred ccccCcchhhhhhccccCCChH--------HHHHHHHHHHHHHHHhhc------------------------------hh
Confidence 34578899999999876 5677 79988442 34444331 12
Q ss_pred -CceeEeeccChHhHHHHHHCCCccc
Q 029423 166 -WSVLDIGTGNGLLLQELSKQGYTLR 190 (193)
Q Consensus 166 -~sILDLGCGNG~LL~eLak~GFs~~ 190 (193)
.+||-+||||+.|...|++.||..-
T Consensus 49 ~~~~l~lGCGNS~l~e~ly~~G~~dI 74 (482)
T KOG2352|consen 49 DFKILQLGCGNSELSEHLYKNGFEDI 74 (482)
T ss_pred hceeEeecCCCCHHHHHHHhcCCCCc
Confidence 3899999999999999999999764
No 5
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=97.64 E-value=3.7e-05 Score=60.91 Aligned_cols=25 Identities=40% Similarity=0.662 Sum_probs=23.2
Q ss_pred CCceeEeeccChHhHHHHHHCCCcc
Q 029423 165 SWSVLDIGTGNGLLLQELSKQGYTL 189 (193)
Q Consensus 165 ~~sILDLGCGNG~LL~eLak~GFs~ 189 (193)
...+.|||||||+|-.-|.++||.|
T Consensus 59 ~~~FVDlGCGNGLLV~IL~~EGy~G 83 (112)
T PF07757_consen 59 FQGFVDLGCGNGLLVYILNSEGYPG 83 (112)
T ss_pred CCceEEccCCchHHHHHHHhCCCCc
Confidence 4579999999999999999999987
No 6
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=97.47 E-value=0.00018 Score=64.71 Aligned_cols=24 Identities=33% Similarity=0.441 Sum_probs=21.8
Q ss_pred CCceeEeeccChHhHHHHHHCCCc
Q 029423 165 SWSVLDIGTGNGLLLQELSKQGYT 188 (193)
Q Consensus 165 ~~sILDLGCGNG~LL~eLak~GFs 188 (193)
..+|||||||+|.+...|++.|+.
T Consensus 145 ~~~VLDlGcGtG~~a~~la~~g~~ 168 (315)
T PLN02585 145 GVTVCDAGCGTGSLAIPLALEGAI 168 (315)
T ss_pred CCEEEEecCCCCHHHHHHHHCCCE
Confidence 468999999999999999999874
No 7
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=97.41 E-value=0.00012 Score=60.52 Aligned_cols=23 Identities=52% Similarity=0.719 Sum_probs=20.7
Q ss_pred CCceeEeeccChHhHHHHHHCCC
Q 029423 165 SWSVLDIGTGNGLLLQELSKQGY 187 (193)
Q Consensus 165 ~~sILDLGCGNG~LL~eLak~GF 187 (193)
..+|||||||+|.++..|++.+.
T Consensus 56 ~~~vLDiGcG~G~~~~~la~~~~ 78 (219)
T TIGR02021 56 GKRVLDAGCGTGLLSIELAKRGA 78 (219)
T ss_pred CCEEEEEeCCCCHHHHHHHHCCC
Confidence 56899999999999999998865
No 8
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=97.40 E-value=0.0001 Score=65.60 Aligned_cols=58 Identities=28% Similarity=0.468 Sum_probs=40.2
Q ss_pred cHHHHHHHHhhhhhhhccCCCCCceecCCchHHHHHHHHHhhhhhhccCcccccccccCCCccccccccCCCCceeEeec
Q 029423 94 LQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGT 173 (193)
Q Consensus 94 tkeYWD~~Y~~EL~NF~e~gD~GEiWFGed~~d~vv~Wlk~~~~~i~q~~ip~~~d~~~~e~~e~~~k~~~~~sILDLGC 173 (193)
.+.|||.+|....++| | .+| +||.+...+|. |. .++ ..-+||.|||
T Consensus 35 ~~k~wD~fy~~~~~rF----------f----kdR--~wL~~Efpel~----~~------------~~~--~~~~ilEvGC 80 (264)
T KOG2361|consen 35 ASKYWDTFYKIHENRF----------F----KDR--NWLLREFPELL----PV------------DEK--SAETILEVGC 80 (264)
T ss_pred hhhhhhhhhhhccccc----------c----chh--HHHHHhhHHhh----Cc------------ccc--Chhhheeecc
Confidence 3569999999888777 6 344 68876543322 11 011 1127999999
Q ss_pred cChHhHHHHHHC
Q 029423 174 GNGLLLQELSKQ 185 (193)
Q Consensus 174 GNG~LL~eLak~ 185 (193)
|+|.+.+.|.+.
T Consensus 81 GvGNtvfPll~~ 92 (264)
T KOG2361|consen 81 GVGNTVFPLLKT 92 (264)
T ss_pred CCCcccchhhhc
Confidence 999999999875
No 9
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=97.37 E-value=0.00016 Score=61.75 Aligned_cols=61 Identities=20% Similarity=0.375 Sum_probs=42.9
Q ss_pred cHHHHHHHHhhhhhhhccCCCCCceecCCchHHHHHHHHHhhhhhhccCcccccccccCCCccccccccCCCCceeEeec
Q 029423 94 LQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGT 173 (193)
Q Consensus 94 tkeYWD~~Y~~EL~NF~e~gD~GEiWFGed~~d~vv~Wlk~~~~~i~q~~ip~~~d~~~~e~~e~~~k~~~~~sILDLGC 173 (193)
+.+||+++|.+.... |-.......+++|+.++. . ....+||..||
T Consensus 2 ~~~~W~~~w~~~~~~----------w~~~~~~p~L~~~~~~l~-------~------------------~~~~rvLvPgC 46 (218)
T PF05724_consen 2 DPEFWEERWQEGQTP----------WDQGEPNPALVEYLDSLA-------L------------------KPGGRVLVPGC 46 (218)
T ss_dssp HHHHHHHHHHTT--T----------T--TTSTHHHHHHHHHHT-------T------------------STSEEEEETTT
T ss_pred CHHHHHHHHhcCCCC----------CCCCCCCHHHHHHHHhcC-------C------------------CCCCeEEEeCC
Confidence 468999999986544 444444456777775421 0 23468999999
Q ss_pred cChHhHHHHHHCCCcc
Q 029423 174 GNGLLLQELSKQGYTL 189 (193)
Q Consensus 174 GNG~LL~eLak~GFs~ 189 (193)
|.|+-+.-|+++||..
T Consensus 47 G~g~D~~~La~~G~~V 62 (218)
T PF05724_consen 47 GKGYDMLWLAEQGHDV 62 (218)
T ss_dssp TTSCHHHHHHHTTEEE
T ss_pred CChHHHHHHHHCCCeE
Confidence 9999999999999964
No 10
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=97.34 E-value=0.00038 Score=60.28 Aligned_cols=61 Identities=11% Similarity=0.140 Sum_probs=44.4
Q ss_pred cHHHHHHHHhhhhhhhccCCCCCceecCCchHHHHHHHHHhhhhhhccCcccccccccCCCccccccccCCCCceeEeec
Q 029423 94 LQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGT 173 (193)
Q Consensus 94 tkeYWD~~Y~~EL~NF~e~gD~GEiWFGed~~d~vv~Wlk~~~~~i~q~~ip~~~d~~~~e~~e~~~k~~~~~sILDLGC 173 (193)
..+||+++|.+.... |.+...-.-+++|+.++. . .+..+||+.||
T Consensus 8 ~~~fW~~rw~~~~~~----------f~~~~pnp~L~~~~~~l~-------~------------------~~~~rvLvPgC 52 (226)
T PRK13256 8 NNQYWLDRWQNDDVG----------FCQESPNEFLVKHFSKLN-------I------------------NDSSVCLIPMC 52 (226)
T ss_pred CHHHHHHHHhcCCCC----------CccCCCCHHHHHHHHhcC-------C------------------CCCCeEEEeCC
Confidence 477999999875433 455554455667765421 1 12468999999
Q ss_pred cChHhHHHHHHCCCcc
Q 029423 174 GNGLLLQELSKQGYTL 189 (193)
Q Consensus 174 GNG~LL~eLak~GFs~ 189 (193)
|+|.-..-|+++||..
T Consensus 53 Gkg~D~~~LA~~G~~V 68 (226)
T PRK13256 53 GCSIDMLFFLSKGVKV 68 (226)
T ss_pred CChHHHHHHHhCCCcE
Confidence 9999999999999975
No 11
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=97.31 E-value=0.00025 Score=58.03 Aligned_cols=24 Identities=33% Similarity=0.540 Sum_probs=21.1
Q ss_pred CCceeEeeccChHhHHHHHHCCCc
Q 029423 165 SWSVLDIGTGNGLLLQELSKQGYT 188 (193)
Q Consensus 165 ~~sILDLGCGNG~LL~eLak~GFs 188 (193)
..+|||||||+|.+...|++.|..
T Consensus 64 ~~~vLDvGcG~G~~~~~l~~~~~~ 87 (230)
T PRK07580 64 GLRILDAGCGVGSLSIPLARRGAK 87 (230)
T ss_pred CCEEEEEeCCCCHHHHHHHHcCCE
Confidence 458999999999999999988753
No 12
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=97.29 E-value=0.00024 Score=64.80 Aligned_cols=25 Identities=36% Similarity=0.468 Sum_probs=22.5
Q ss_pred CCCCceeEeeccChHhHHHHHHCCC
Q 029423 163 LSSWSVLDIGTGNGLLLQELSKQGY 187 (193)
Q Consensus 163 ~~~~sILDLGCGNG~LL~eLak~GF 187 (193)
+++.+|||||||||..++.|+.+|=
T Consensus 114 L~gk~VLDIGC~nGY~~frM~~~GA 138 (315)
T PF08003_consen 114 LKGKRVLDIGCNNGYYSFRMLGRGA 138 (315)
T ss_pred cCCCEEEEecCCCcHHHHHHhhcCC
Confidence 5577999999999999999999875
No 13
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=97.14 E-value=0.00024 Score=63.87 Aligned_cols=27 Identities=37% Similarity=0.685 Sum_probs=23.7
Q ss_pred CCCCceeEeeccChHhHHHHHHCCCcc
Q 029423 163 LSSWSVLDIGTGNGLLLQELSKQGYTL 189 (193)
Q Consensus 163 ~~~~sILDLGCGNG~LL~eLak~GFs~ 189 (193)
....+|||+|||.|+|++.|++.|++.
T Consensus 88 ~~g~~ilDvGCGgGLLSepLArlga~V 114 (282)
T KOG1270|consen 88 LLGMKILDVGCGGGLLSEPLARLGAQV 114 (282)
T ss_pred cCCceEEEeccCccccchhhHhhCCee
Confidence 345679999999999999999999864
No 14
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=97.00 E-value=0.00045 Score=61.05 Aligned_cols=27 Identities=37% Similarity=0.724 Sum_probs=24.3
Q ss_pred CCCCceeEeeccChHhHHHHHHCCCcc
Q 029423 163 LSSWSVLDIGTGNGLLLQELSKQGYTL 189 (193)
Q Consensus 163 ~~~~sILDLGCGNG~LL~eLak~GFs~ 189 (193)
++..+|||||||-|.|+..||++|++.
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga~V 84 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGASV 84 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCCee
Confidence 356799999999999999999999865
No 15
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=96.91 E-value=0.00087 Score=59.95 Aligned_cols=25 Identities=32% Similarity=0.550 Sum_probs=21.8
Q ss_pred CCCceeEeeccChHhHHHHHHCCCc
Q 029423 164 SSWSVLDIGTGNGLLLQELSKQGYT 188 (193)
Q Consensus 164 ~~~sILDLGCGNG~LL~eLak~GFs 188 (193)
+..+|||||||+|.++..|++.|..
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~~ 146 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGAK 146 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCC
Confidence 3568999999999999999998753
No 16
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=96.57 E-value=0.0028 Score=53.09 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=19.0
Q ss_pred CCceeEeeccChHhHHHHHHC
Q 029423 165 SWSVLDIGTGNGLLLQELSKQ 185 (193)
Q Consensus 165 ~~sILDLGCGNG~LL~eLak~ 185 (193)
..+|||||||+|.++..|++.
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~ 64 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRL 64 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHh
Confidence 457999999999999999886
No 17
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=96.50 E-value=0.0019 Score=58.28 Aligned_cols=26 Identities=38% Similarity=0.691 Sum_probs=22.5
Q ss_pred CCCceeEeeccChHhHHHHHHCCCcc
Q 029423 164 SSWSVLDIGTGNGLLLQELSKQGYTL 189 (193)
Q Consensus 164 ~~~sILDLGCGNG~LL~eLak~GFs~ 189 (193)
+..+|||||||+|.++..|++.|++.
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~~V 156 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGATV 156 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCCEE
Confidence 45689999999999999999988753
No 18
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=96.42 E-value=0.0022 Score=57.50 Aligned_cols=25 Identities=36% Similarity=0.563 Sum_probs=21.2
Q ss_pred CCCceeEeeccChHhHHHHHHCCCc
Q 029423 164 SSWSVLDIGTGNGLLLQELSKQGYT 188 (193)
Q Consensus 164 ~~~sILDLGCGNG~LL~eLak~GFs 188 (193)
+..+|||||||+|.|...-++.|-.
T Consensus 161 ~g~~vLDvG~GSGILaiaA~klGA~ 185 (295)
T PF06325_consen 161 PGKRVLDVGCGSGILAIAAAKLGAK 185 (295)
T ss_dssp TTSEEEEES-TTSHHHHHHHHTTBS
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCCC
Confidence 3568999999999999999999864
No 19
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=96.41 E-value=0.003 Score=57.22 Aligned_cols=26 Identities=35% Similarity=0.533 Sum_probs=22.9
Q ss_pred CCCCceeEeeccChHhHHHHHHCCCc
Q 029423 163 LSSWSVLDIGTGNGLLLQELSKQGYT 188 (193)
Q Consensus 163 ~~~~sILDLGCGNG~LL~eLak~GFs 188 (193)
++..+|||||||.|.|..+.+|.|-.
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~kLGA~ 186 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAKLGAK 186 (300)
T ss_pred cCCCEEEEecCChhHHHHHHHHcCCc
Confidence 34678999999999999999999864
No 20
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=96.39 E-value=0.0026 Score=55.33 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=21.9
Q ss_pred CceeEeeccChHhHHHHHHCCCcc
Q 029423 166 WSVLDIGTGNGLLLQELSKQGYTL 189 (193)
Q Consensus 166 ~sILDLGCGNG~LL~eLak~GFs~ 189 (193)
.+|||||||.|.++..|++.|+..
T Consensus 122 ~~vLDlGcG~G~~~~~la~~g~~V 145 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLALLGFDV 145 (287)
T ss_pred CCEEEeCCCCCHHHHHHHHCCCEE
Confidence 489999999999999999999854
No 21
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=96.25 E-value=0.0036 Score=50.55 Aligned_cols=25 Identities=44% Similarity=0.484 Sum_probs=21.6
Q ss_pred CCceeEeeccChHhHHHHHHCCCcc
Q 029423 165 SWSVLDIGTGNGLLLQELSKQGYTL 189 (193)
Q Consensus 165 ~~sILDLGCGNG~LL~eLak~GFs~ 189 (193)
..+|||||||+|.++..|++.+...
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~~ 59 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQA 59 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCCC
Confidence 3579999999999999999987544
No 22
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=96.24 E-value=0.0033 Score=56.67 Aligned_cols=25 Identities=24% Similarity=0.526 Sum_probs=21.8
Q ss_pred CCCceeEeeccChHhHHHHHHCCCc
Q 029423 164 SSWSVLDIGTGNGLLLQELSKQGYT 188 (193)
Q Consensus 164 ~~~sILDLGCGNG~LL~eLak~GFs 188 (193)
+..+|||||||+|.++..|++.|..
T Consensus 121 ~g~~VLDvGCG~G~~~~~~~~~g~~ 145 (314)
T TIGR00452 121 KGRTILDVGCGSGYHMWRMLGHGAK 145 (314)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCC
Confidence 3568999999999999999998863
No 23
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.23 E-value=0.0031 Score=53.57 Aligned_cols=25 Identities=32% Similarity=0.488 Sum_probs=22.1
Q ss_pred CCceeEeeccChHhHHHHHHCCCcc
Q 029423 165 SWSVLDIGTGNGLLLQELSKQGYTL 189 (193)
Q Consensus 165 ~~sILDLGCGNG~LL~eLak~GFs~ 189 (193)
..+|||||||+|.+...|++.|...
T Consensus 45 ~~~vLDiGcG~G~~a~~la~~g~~v 69 (255)
T PRK11036 45 PLRVLDAGGGEGQTAIKLAELGHQV 69 (255)
T ss_pred CCEEEEeCCCchHHHHHHHHcCCEE
Confidence 4589999999999999999998653
No 24
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=96.18 E-value=0.0039 Score=52.33 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=20.8
Q ss_pred CCceeEeeccChHhHHHHHHCCCc
Q 029423 165 SWSVLDIGTGNGLLLQELSKQGYT 188 (193)
Q Consensus 165 ~~sILDLGCGNG~LL~eLak~GFs 188 (193)
..+|||||||+|.++..|++.|..
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~~~~~ 66 (251)
T PRK10258 43 FTHVLDAGCGPGWMSRYWRERGSQ 66 (251)
T ss_pred CCeEEEeeCCCCHHHHHHHHcCCe
Confidence 357999999999999999988753
No 25
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=96.02 E-value=0.0048 Score=52.64 Aligned_cols=25 Identities=36% Similarity=0.586 Sum_probs=22.2
Q ss_pred CCCceeEeeccChHhHHHHHHCCCc
Q 029423 164 SSWSVLDIGTGNGLLLQELSKQGYT 188 (193)
Q Consensus 164 ~~~sILDLGCGNG~LL~eLak~GFs 188 (193)
+..+|||||||+|.+...+++.|..
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~g~~ 143 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKLGAK 143 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCCC
Confidence 4568999999999999999998875
No 26
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=96.01 E-value=0.0051 Score=49.51 Aligned_cols=24 Identities=38% Similarity=0.632 Sum_probs=21.0
Q ss_pred CCceeEeeccChHhHHHHHHCCCc
Q 029423 165 SWSVLDIGTGNGLLLQELSKQGYT 188 (193)
Q Consensus 165 ~~sILDLGCGNG~LL~eLak~GFs 188 (193)
..+|||||||+|.++..|++.+-.
T Consensus 32 ~~~vLDlG~G~G~i~~~la~~~~~ 55 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALAKRGPD 55 (170)
T ss_dssp TCEEEEETSTTSHHHHHHHHTSTC
T ss_pred CCeEEEecCChHHHHHHHHHhCCC
Confidence 457999999999999999998654
No 27
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=95.98 E-value=0.0053 Score=44.72 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=19.0
Q ss_pred CCceeEeeccChHhHHHHHHC
Q 029423 165 SWSVLDIGTGNGLLLQELSKQ 185 (193)
Q Consensus 165 ~~sILDLGCGNG~LL~eLak~ 185 (193)
..+|||||||+|.++..|++.
T Consensus 20 ~~~vldlG~G~G~~~~~l~~~ 40 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAARL 40 (124)
T ss_pred CCEEEEeCCCCCHHHHHHHHH
Confidence 458999999999999999986
No 28
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=95.92 E-value=0.005 Score=55.94 Aligned_cols=22 Identities=41% Similarity=0.567 Sum_probs=19.7
Q ss_pred CCceeEeeccChHhHHHHHHCC
Q 029423 165 SWSVLDIGTGNGLLLQELSKQG 186 (193)
Q Consensus 165 ~~sILDLGCGNG~LL~eLak~G 186 (193)
..+|||||||+|.|+..|++..
T Consensus 159 ~~~vlDlGCG~Gvlg~~la~~~ 180 (300)
T COG2813 159 GGKVLDLGCGYGVLGLVLAKKS 180 (300)
T ss_pred CCcEEEeCCCccHHHHHHHHhC
Confidence 4489999999999999999874
No 29
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=95.84 E-value=0.0063 Score=50.15 Aligned_cols=21 Identities=24% Similarity=0.216 Sum_probs=19.0
Q ss_pred CCceeEeeccChHhHHHHHHC
Q 029423 165 SWSVLDIGTGNGLLLQELSKQ 185 (193)
Q Consensus 165 ~~sILDLGCGNG~LL~eLak~ 185 (193)
..+|||||||+|.++..|++.
T Consensus 46 ~~~vLDiGcG~G~~~~~la~~ 66 (231)
T TIGR02752 46 GTSALDVCCGTADWSIALAEA 66 (231)
T ss_pred CCEEEEeCCCcCHHHHHHHHH
Confidence 468999999999999999875
No 30
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=95.82 E-value=0.0098 Score=55.07 Aligned_cols=21 Identities=29% Similarity=0.548 Sum_probs=19.3
Q ss_pred CceeEeeccChHhHHHHHHCC
Q 029423 166 WSVLDIGTGNGLLLQELSKQG 186 (193)
Q Consensus 166 ~sILDLGCGNG~LL~eLak~G 186 (193)
.+|||||||||.++..|++.+
T Consensus 230 ~~VLDLGCGtGvi~i~la~~~ 250 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDKN 250 (378)
T ss_pred CeEEEEeccccHHHHHHHHhC
Confidence 489999999999999999874
No 31
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=95.81 E-value=0.0042 Score=51.28 Aligned_cols=20 Identities=45% Similarity=0.767 Sum_probs=18.4
Q ss_pred CceeEeeccChHhHHHHHHC
Q 029423 166 WSVLDIGTGNGLLLQELSKQ 185 (193)
Q Consensus 166 ~sILDLGCGNG~LL~eLak~ 185 (193)
.+|||+|||+|.++..|++.
T Consensus 89 ~~ilDig~G~G~~~~~l~~~ 108 (251)
T TIGR03534 89 LRVLDLGTGSGAIALALAKE 108 (251)
T ss_pred CeEEEEeCcHhHHHHHHHHH
Confidence 47999999999999999986
No 32
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=95.74 E-value=0.0072 Score=50.64 Aligned_cols=21 Identities=19% Similarity=0.308 Sum_probs=19.0
Q ss_pred CCceeEeeccChHhHHHHHHC
Q 029423 165 SWSVLDIGTGNGLLLQELSKQ 185 (193)
Q Consensus 165 ~~sILDLGCGNG~LL~eLak~ 185 (193)
..+|||||||+|.++..|++.
T Consensus 54 ~~~iLDlGcG~G~~~~~l~~~ 74 (239)
T TIGR00740 54 DSNVYDLGCSRGAATLSARRN 74 (239)
T ss_pred CCEEEEecCCCCHHHHHHHHh
Confidence 458999999999999999886
No 33
>PRK14967 putative methyltransferase; Provisional
Probab=95.73 E-value=0.0074 Score=50.36 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=20.9
Q ss_pred CCceeEeeccChHhHHHHHHCCC
Q 029423 165 SWSVLDIGTGNGLLLQELSKQGY 187 (193)
Q Consensus 165 ~~sILDLGCGNG~LL~eLak~GF 187 (193)
..+|||+|||+|.++..|++.|+
T Consensus 37 ~~~vLDlGcG~G~~~~~la~~~~ 59 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAAAAAGA 59 (223)
T ss_pred CCeEEEecCCHHHHHHHHHHcCC
Confidence 46899999999999999999875
No 34
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=95.73 E-value=0.0069 Score=50.24 Aligned_cols=21 Identities=38% Similarity=0.534 Sum_probs=19.1
Q ss_pred CCceeEeeccChHhHHHHHHC
Q 029423 165 SWSVLDIGTGNGLLLQELSKQ 185 (193)
Q Consensus 165 ~~sILDLGCGNG~LL~eLak~ 185 (193)
..+|||||||+|.++..|++.
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~ 61 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKA 61 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHH
Confidence 468999999999999999886
No 35
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=95.72 E-value=0.0078 Score=52.65 Aligned_cols=24 Identities=33% Similarity=0.525 Sum_probs=21.4
Q ss_pred CCCceeEeeccChHhHHHHHHCCC
Q 029423 164 SSWSVLDIGTGNGLLLQELSKQGY 187 (193)
Q Consensus 164 ~~~sILDLGCGNG~LL~eLak~GF 187 (193)
+..+|||||||+|.+...+++.|.
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~g~ 182 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKLGA 182 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHcCC
Confidence 356899999999999999999886
No 36
>PRK05785 hypothetical protein; Provisional
Probab=95.66 E-value=0.0081 Score=50.92 Aligned_cols=21 Identities=33% Similarity=0.460 Sum_probs=19.3
Q ss_pred CCceeEeeccChHhHHHHHHC
Q 029423 165 SWSVLDIGTGNGLLLQELSKQ 185 (193)
Q Consensus 165 ~~sILDLGCGNG~LL~eLak~ 185 (193)
..+|||||||+|.++..|++.
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~ 72 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKV 72 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHh
Confidence 458999999999999999988
No 37
>PRK06202 hypothetical protein; Provisional
Probab=95.59 E-value=0.0088 Score=49.87 Aligned_cols=20 Identities=40% Similarity=0.714 Sum_probs=17.5
Q ss_pred CCceeEeeccChHhHHHHHH
Q 029423 165 SWSVLDIGTGNGLLLQELSK 184 (193)
Q Consensus 165 ~~sILDLGCGNG~LL~eLak 184 (193)
..+|||||||+|.++..|++
T Consensus 61 ~~~iLDlGcG~G~~~~~L~~ 80 (232)
T PRK06202 61 PLTLLDIGCGGGDLAIDLAR 80 (232)
T ss_pred CcEEEEeccCCCHHHHHHHH
Confidence 46899999999999888875
No 38
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=95.51 E-value=0.0059 Score=51.48 Aligned_cols=22 Identities=41% Similarity=0.688 Sum_probs=19.7
Q ss_pred CCceeEeeccChHhHHHHHHCC
Q 029423 165 SWSVLDIGTGNGLLLQELSKQG 186 (193)
Q Consensus 165 ~~sILDLGCGNG~LL~eLak~G 186 (193)
..+|||+|||+|.++..|++..
T Consensus 109 ~~~vLDiG~GsG~~~~~la~~~ 130 (275)
T PRK09328 109 PLRVLDLGTGSGAIALALAKER 130 (275)
T ss_pred CCEEEEEcCcHHHHHHHHHHHC
Confidence 4689999999999999999875
No 39
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=95.51 E-value=0.0091 Score=50.24 Aligned_cols=21 Identities=29% Similarity=0.417 Sum_probs=19.0
Q ss_pred CCceeEeeccChHhHHHHHHC
Q 029423 165 SWSVLDIGTGNGLLLQELSKQ 185 (193)
Q Consensus 165 ~~sILDLGCGNG~LL~eLak~ 185 (193)
..+|||||||+|.+...|++.
T Consensus 32 ~~~vLDiGcG~G~~~~~la~~ 52 (258)
T PRK01683 32 PRYVVDLGCGPGNSTELLVER 52 (258)
T ss_pred CCEEEEEcccCCHHHHHHHHH
Confidence 468999999999999999986
No 40
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=95.47 E-value=0.011 Score=47.81 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=20.0
Q ss_pred CCceeEeeccChHhHHHHHHCCC
Q 029423 165 SWSVLDIGTGNGLLLQELSKQGY 187 (193)
Q Consensus 165 ~~sILDLGCGNG~LL~eLak~GF 187 (193)
..+|||||||+|.+...|++.+-
T Consensus 32 ~~~vLDiG~G~G~~~~~la~~~~ 54 (187)
T PRK08287 32 AKHLIDVGAGTGSVSIEAALQFP 54 (187)
T ss_pred CCEEEEECCcCCHHHHHHHHHCC
Confidence 45899999999999999998753
No 41
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=95.39 E-value=0.0096 Score=49.02 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=19.1
Q ss_pred CCceeEeeccChHhHHHHHHCC
Q 029423 165 SWSVLDIGTGNGLLLQELSKQG 186 (193)
Q Consensus 165 ~~sILDLGCGNG~LL~eLak~G 186 (193)
..+|||||||+|.++..|+..+
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~ 64 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIAR 64 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHC
Confidence 4689999999999999988654
No 42
>PRK04148 hypothetical protein; Provisional
Probab=95.38 E-value=0.023 Score=46.05 Aligned_cols=25 Identities=16% Similarity=0.504 Sum_probs=21.8
Q ss_pred CCceeEeeccChH-hHHHHHHCCCcc
Q 029423 165 SWSVLDIGTGNGL-LLQELSKQGYTL 189 (193)
Q Consensus 165 ~~sILDLGCGNG~-LL~eLak~GFs~ 189 (193)
+.+||+||||.|. +...|++.|+..
T Consensus 17 ~~kileIG~GfG~~vA~~L~~~G~~V 42 (134)
T PRK04148 17 NKKIVELGIGFYFKVAKKLKESGFDV 42 (134)
T ss_pred CCEEEEEEecCCHHHHHHHHHCCCEE
Confidence 4579999999995 999999999865
No 43
>PLN02244 tocopherol O-methyltransferase
Probab=95.32 E-value=0.013 Score=52.62 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=19.6
Q ss_pred CCCceeEeeccChHhHHHHHHC
Q 029423 164 SSWSVLDIGTGNGLLLQELSKQ 185 (193)
Q Consensus 164 ~~~sILDLGCGNG~LL~eLak~ 185 (193)
+..+|||||||+|.++..|++.
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~ 139 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARK 139 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHh
Confidence 3568999999999999999986
No 44
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=95.29 E-value=0.013 Score=49.91 Aligned_cols=20 Identities=20% Similarity=0.290 Sum_probs=18.1
Q ss_pred CCceeEeeccChHhHHHHHH
Q 029423 165 SWSVLDIGTGNGLLLQELSK 184 (193)
Q Consensus 165 ~~sILDLGCGNG~LL~eLak 184 (193)
..+|||||||+|.++..|++
T Consensus 57 ~~~vLDlGcGtG~~~~~l~~ 76 (247)
T PRK15451 57 GTQVYDLGCSLGAATLSVRR 76 (247)
T ss_pred CCEEEEEcccCCHHHHHHHH
Confidence 46899999999999998887
No 45
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=95.22 E-value=0.027 Score=46.61 Aligned_cols=23 Identities=35% Similarity=0.690 Sum_probs=20.7
Q ss_pred CCceeEeeccChHhHHHHHHCCC
Q 029423 165 SWSVLDIGTGNGLLLQELSKQGY 187 (193)
Q Consensus 165 ~~sILDLGCGNG~LL~eLak~GF 187 (193)
..+|||||||+|.++..|.+.|.
T Consensus 49 ~~~vLdiG~G~G~~~~~l~~~~~ 71 (233)
T PRK05134 49 GKRVLDVGCGGGILSESMARLGA 71 (233)
T ss_pred CCeEEEeCCCCCHHHHHHHHcCC
Confidence 56899999999999999998875
No 46
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=95.19 E-value=0.014 Score=50.27 Aligned_cols=21 Identities=33% Similarity=0.615 Sum_probs=18.6
Q ss_pred CCceeEeeccChHhHHHHHHC
Q 029423 165 SWSVLDIGTGNGLLLQELSKQ 185 (193)
Q Consensus 165 ~~sILDLGCGNG~LL~eLak~ 185 (193)
..+|||||||+|.++..|++.
T Consensus 86 ~~~vLDiGcG~G~~~~~l~~~ 106 (272)
T PRK11088 86 ATALLDIGCGEGYYTHALADA 106 (272)
T ss_pred CCeEEEECCcCCHHHHHHHHh
Confidence 357999999999999999875
No 47
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=95.14 E-value=0.013 Score=51.94 Aligned_cols=21 Identities=38% Similarity=0.585 Sum_probs=19.5
Q ss_pred CCceeEeeccChHhHHHHHHC
Q 029423 165 SWSVLDIGTGNGLLLQELSKQ 185 (193)
Q Consensus 165 ~~sILDLGCGNG~LL~eLak~ 185 (193)
..+|||||||||.++..|++.
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r 65 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQR 65 (248)
T ss_pred CCeEEEecCCcCHHHHHHhcc
Confidence 578999999999999999986
No 48
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=95.09 E-value=0.025 Score=50.08 Aligned_cols=23 Identities=22% Similarity=0.185 Sum_probs=20.5
Q ss_pred CCceeEeeccChHhHHHHHHCCC
Q 029423 165 SWSVLDIGTGNGLLLQELSKQGY 187 (193)
Q Consensus 165 ~~sILDLGCGNG~LL~eLak~GF 187 (193)
..+|||||||+|.++..|++.|.
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~~~ 196 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATPGM 196 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhcCC
Confidence 35799999999999999999764
No 49
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=94.99 E-value=0.01 Score=56.02 Aligned_cols=21 Identities=29% Similarity=0.484 Sum_probs=18.5
Q ss_pred CCceeEeeccChHhHHHHHHC
Q 029423 165 SWSVLDIGTGNGLLLQELSKQ 185 (193)
Q Consensus 165 ~~sILDLGCGNG~LL~eLak~ 185 (193)
..+|||||||+|.++..|++.
T Consensus 252 ~~rVLDLGcGSG~IaiaLA~~ 272 (423)
T PRK14966 252 NGRVWDLGTGSGAVAVTVALE 272 (423)
T ss_pred CCEEEEEeChhhHHHHHHHHh
Confidence 347999999999999999875
No 50
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=94.97 E-value=0.021 Score=50.32 Aligned_cols=25 Identities=36% Similarity=0.393 Sum_probs=19.0
Q ss_pred CCCceeEeeccChHhHHHHHHC-CCc
Q 029423 164 SSWSVLDIGTGNGLLLQELSKQ-GYT 188 (193)
Q Consensus 164 ~~~sILDLGCGNG~LL~eLak~-GFs 188 (193)
+..+|||||||-|.++..+++. |-+
T Consensus 62 ~G~~vLDiGcGwG~~~~~~a~~~g~~ 87 (273)
T PF02353_consen 62 PGDRVLDIGCGWGGLAIYAAERYGCH 87 (273)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHH--E
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCcE
Confidence 4678999999999999999998 653
No 51
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=94.80 E-value=0.021 Score=46.29 Aligned_cols=23 Identities=30% Similarity=0.254 Sum_probs=19.8
Q ss_pred CCCceeEeeccChHhHHHHHHCC
Q 029423 164 SSWSVLDIGTGNGLLLQELSKQG 186 (193)
Q Consensus 164 ~~~sILDLGCGNG~LL~eLak~G 186 (193)
+..+|||||||+|.+...+++..
T Consensus 32 ~g~~VLDiG~GtG~~~~~l~~~~ 54 (188)
T TIGR00438 32 PGDTVLDLGAAPGGWSQVAVEQV 54 (188)
T ss_pred CCCEEEEecCCCCHHHHHHHHHh
Confidence 45689999999999999888764
No 52
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=94.80 E-value=0.02 Score=49.41 Aligned_cols=21 Identities=38% Similarity=0.379 Sum_probs=18.9
Q ss_pred CCceeEeeccChHhHHHHHHC
Q 029423 165 SWSVLDIGTGNGLLLQELSKQ 185 (193)
Q Consensus 165 ~~sILDLGCGNG~LL~eLak~ 185 (193)
..+|||||||+|.+...|++.
T Consensus 74 ~~~VLDlGcGtG~~~~~la~~ 94 (261)
T PLN02233 74 GDRVLDLCCGSGDLAFLLSEK 94 (261)
T ss_pred CCEEEEECCcCCHHHHHHHHH
Confidence 568999999999999999876
No 53
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=94.76 E-value=0.022 Score=46.23 Aligned_cols=22 Identities=36% Similarity=0.389 Sum_probs=19.7
Q ss_pred CCceeEeeccChHhHHHHHHCC
Q 029423 165 SWSVLDIGTGNGLLLQELSKQG 186 (193)
Q Consensus 165 ~~sILDLGCGNG~LL~eLak~G 186 (193)
..+|||||||+|.++..|++.+
T Consensus 52 ~~~vldiG~G~G~~~~~l~~~~ 73 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALAKAV 73 (239)
T ss_pred CCeEEEeCCCCCHHHHHHHHHc
Confidence 4689999999999999998876
No 54
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=94.74 E-value=0.022 Score=49.50 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=20.6
Q ss_pred CCceeEeeccChHhHHHHHHCCC
Q 029423 165 SWSVLDIGTGNGLLLQELSKQGY 187 (193)
Q Consensus 165 ~~sILDLGCGNG~LL~eLak~GF 187 (193)
..+|||||||.|.+...|++.|-
T Consensus 43 ~~~VLEiG~G~G~lt~~L~~~~~ 65 (272)
T PRK00274 43 GDNVLEIGPGLGALTEPLLERAA 65 (272)
T ss_pred cCeEEEeCCCccHHHHHHHHhCC
Confidence 45899999999999999999864
No 55
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=94.70 E-value=0.028 Score=45.90 Aligned_cols=25 Identities=40% Similarity=0.664 Sum_probs=21.5
Q ss_pred CCCceeEeeccChHhHHHHHHCCCc
Q 029423 164 SSWSVLDIGTGNGLLLQELSKQGYT 188 (193)
Q Consensus 164 ~~~sILDLGCGNG~LL~eLak~GFs 188 (193)
...+|||||||.|.+...|++.|..
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~~ 69 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGAN 69 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCe
Confidence 3568999999999999999988754
No 56
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=94.68 E-value=0.022 Score=47.25 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=20.0
Q ss_pred CCCceeEeeccChHhHHHHHHCC
Q 029423 164 SSWSVLDIGTGNGLLLQELSKQG 186 (193)
Q Consensus 164 ~~~sILDLGCGNG~LL~eLak~G 186 (193)
+..+|||||||+|.+...|++..
T Consensus 77 ~~~~VLDiG~GsG~~a~~la~~~ 99 (215)
T TIGR00080 77 PGMKVLEIGTGSGYQAAVLAEIV 99 (215)
T ss_pred CcCEEEEECCCccHHHHHHHHHh
Confidence 35689999999999999999863
No 57
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=94.63 E-value=0.025 Score=47.49 Aligned_cols=22 Identities=27% Similarity=0.243 Sum_probs=19.5
Q ss_pred CCceeEeeccChHhHHHHHHCC
Q 029423 165 SWSVLDIGTGNGLLLQELSKQG 186 (193)
Q Consensus 165 ~~sILDLGCGNG~LL~eLak~G 186 (193)
..+|||||||+|.+.+.|++..
T Consensus 52 ~~~VLDlG~GtG~~t~~l~~~~ 73 (209)
T PRK11188 52 GMTVVDLGAAPGGWSQYAVTQI 73 (209)
T ss_pred CCEEEEEcccCCHHHHHHHHHc
Confidence 5689999999999999998863
No 58
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=94.61 E-value=0.026 Score=46.80 Aligned_cols=21 Identities=24% Similarity=0.498 Sum_probs=18.4
Q ss_pred CCceeEeeccChHhHHHHHHC
Q 029423 165 SWSVLDIGTGNGLLLQELSKQ 185 (193)
Q Consensus 165 ~~sILDLGCGNG~LL~eLak~ 185 (193)
..+|||||||+|.+...|++.
T Consensus 73 ~~~VLDiG~GsG~~~~~la~~ 93 (205)
T PRK13944 73 GMKILEVGTGSGYQAAVCAEA 93 (205)
T ss_pred CCEEEEECcCccHHHHHHHHh
Confidence 468999999999999888874
No 59
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=94.53 E-value=0.027 Score=48.76 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=21.2
Q ss_pred CCCceeEeeccChHhHHHHHHCCC
Q 029423 164 SSWSVLDIGTGNGLLLQELSKQGY 187 (193)
Q Consensus 164 ~~~sILDLGCGNG~LL~eLak~GF 187 (193)
+...|||||||+|.|...|++.|-
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ga 98 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKGA 98 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcCC
Confidence 356799999999999999999874
No 60
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.45 E-value=0.028 Score=48.54 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=20.0
Q ss_pred CCceeEeeccChHhHHHHHHCCC
Q 029423 165 SWSVLDIGTGNGLLLQELSKQGY 187 (193)
Q Consensus 165 ~~sILDLGCGNG~LL~eLak~GF 187 (193)
...|||||||||.|.+..+-.|=
T Consensus 46 g~~V~DlG~GTG~La~ga~~lGa 68 (198)
T COG2263 46 GKTVLDLGAGTGILAIGAALLGA 68 (198)
T ss_pred CCEEEEcCCCcCHHHHHHHhcCC
Confidence 45799999999999999988773
No 61
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=94.44 E-value=0.051 Score=42.64 Aligned_cols=21 Identities=33% Similarity=0.691 Sum_probs=19.0
Q ss_pred CCCceeEeeccChHhHHHHHH
Q 029423 164 SSWSVLDIGTGNGLLLQELSK 184 (193)
Q Consensus 164 ~~~sILDLGCGNG~LL~eLak 184 (193)
....|+|+|||.|+|++.|+.
T Consensus 25 ~~~~vvD~GsG~GyLs~~La~ 45 (141)
T PF13679_consen 25 RCITVVDLGSGKGYLSRALAH 45 (141)
T ss_pred CCCEEEEeCCChhHHHHHHHH
Confidence 356899999999999999998
No 62
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=94.42 E-value=0.031 Score=46.63 Aligned_cols=21 Identities=33% Similarity=0.442 Sum_probs=18.6
Q ss_pred CCceeEeeccChHhHHHHHHC
Q 029423 165 SWSVLDIGTGNGLLLQELSKQ 185 (193)
Q Consensus 165 ~~sILDLGCGNG~LL~eLak~ 185 (193)
..+|||||||.|.++..|++.
T Consensus 46 g~~VLDiGcGtG~~al~la~~ 66 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIA 66 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHH
Confidence 468999999999999999864
No 63
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=94.41 E-value=0.03 Score=44.90 Aligned_cols=23 Identities=39% Similarity=0.481 Sum_probs=20.7
Q ss_pred CCceeEeeccChHhHHHHHHCCC
Q 029423 165 SWSVLDIGTGNGLLLQELSKQGY 187 (193)
Q Consensus 165 ~~sILDLGCGNG~LL~eLak~GF 187 (193)
..+|||+|||+|.++..|++.+.
T Consensus 40 ~~~vldiG~G~G~~~~~~~~~~~ 62 (223)
T TIGR01934 40 GQKVLDVACGTGDLAIELAKSAP 62 (223)
T ss_pred CCeEEEeCCCCChhHHHHHHhcC
Confidence 56899999999999999998865
No 64
>PRK07402 precorrin-6B methylase; Provisional
Probab=94.39 E-value=0.032 Score=45.50 Aligned_cols=21 Identities=29% Similarity=0.377 Sum_probs=18.7
Q ss_pred CCceeEeeccChHhHHHHHHC
Q 029423 165 SWSVLDIGTGNGLLLQELSKQ 185 (193)
Q Consensus 165 ~~sILDLGCGNG~LL~eLak~ 185 (193)
..+|||||||.|.+...|++.
T Consensus 41 ~~~VLDiG~G~G~~~~~la~~ 61 (196)
T PRK07402 41 DSVLWDIGAGTGTIPVEAGLL 61 (196)
T ss_pred CCEEEEeCCCCCHHHHHHHHH
Confidence 468999999999999999865
No 65
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=94.35 E-value=0.025 Score=51.33 Aligned_cols=21 Identities=38% Similarity=0.656 Sum_probs=19.0
Q ss_pred CceeEeeccChHhHHHHHHCC
Q 029423 166 WSVLDIGTGNGLLLQELSKQG 186 (193)
Q Consensus 166 ~sILDLGCGNG~LL~eLak~G 186 (193)
.+|||||||+|.++..|++.+
T Consensus 198 g~VLDlGCG~G~ls~~la~~~ 218 (342)
T PRK09489 198 GKVLDVGCGAGVLSAVLARHS 218 (342)
T ss_pred CeEEEeccCcCHHHHHHHHhC
Confidence 479999999999999999874
No 66
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=94.20 E-value=0.036 Score=45.46 Aligned_cols=22 Identities=36% Similarity=0.415 Sum_probs=19.1
Q ss_pred CCCceeEeeccChHhHHHHHHC
Q 029423 164 SSWSVLDIGTGNGLLLQELSKQ 185 (193)
Q Consensus 164 ~~~sILDLGCGNG~LL~eLak~ 185 (193)
+..+|||+|||+|.++.++++.
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~ 61 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLL 61 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHH
Confidence 4568999999999999998764
No 67
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=94.09 E-value=0.036 Score=51.11 Aligned_cols=23 Identities=39% Similarity=0.537 Sum_probs=20.2
Q ss_pred CCceeEeeccChHhHHHHHHCCC
Q 029423 165 SWSVLDIGTGNGLLLQELSKQGY 187 (193)
Q Consensus 165 ~~sILDLGCGNG~LL~eLak~GF 187 (193)
..+|||||||+|.++..|++.+.
T Consensus 38 ~~~vLDlGcG~G~~~~~la~~~~ 60 (475)
T PLN02336 38 GKSVLELGAGIGRFTGELAKKAG 60 (475)
T ss_pred CCEEEEeCCCcCHHHHHHHhhCC
Confidence 45899999999999999998754
No 68
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=94.02 E-value=0.037 Score=51.82 Aligned_cols=21 Identities=29% Similarity=0.378 Sum_probs=19.4
Q ss_pred CCceeEeeccChHhHHHHHHC
Q 029423 165 SWSVLDIGTGNGLLLQELSKQ 185 (193)
Q Consensus 165 ~~sILDLGCGNG~LL~eLak~ 185 (193)
...|||||||+|.++..|++.
T Consensus 123 ~p~vLEIGcGsG~~ll~lA~~ 143 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQAKN 143 (390)
T ss_pred CCeEEEEcCcccHHHHHHHHh
Confidence 458999999999999999987
No 69
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=94.02 E-value=0.067 Score=49.56 Aligned_cols=23 Identities=30% Similarity=0.274 Sum_probs=20.3
Q ss_pred CCceeEeeccChHhHHHHHHCCC
Q 029423 165 SWSVLDIGTGNGLLLQELSKQGY 187 (193)
Q Consensus 165 ~~sILDLGCGNG~LL~eLak~GF 187 (193)
..+|||||||+|.++..|++.+-
T Consensus 298 ~~~VLDlgcGtG~~sl~la~~~~ 320 (443)
T PRK13168 298 GDRVLDLFCGLGNFTLPLARQAA 320 (443)
T ss_pred CCEEEEEeccCCHHHHHHHHhCC
Confidence 45899999999999999998763
No 70
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=93.82 E-value=0.049 Score=45.20 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=21.6
Q ss_pred CCceeEeeccChHhHHHHHHCCCc
Q 029423 165 SWSVLDIGTGNGLLLQELSKQGYT 188 (193)
Q Consensus 165 ~~sILDLGCGNG~LL~eLak~GFs 188 (193)
..+||||+||+|.|+++++..|-.
T Consensus 50 g~~vLDLfaGsG~lglea~srga~ 73 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSRGAK 73 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhCCCC
Confidence 468999999999999999999863
No 71
>PRK04266 fibrillarin; Provisional
Probab=93.69 E-value=0.05 Score=46.66 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=19.6
Q ss_pred CCCceeEeeccChHhHHHHHHC
Q 029423 164 SSWSVLDIGTGNGLLLQELSKQ 185 (193)
Q Consensus 164 ~~~sILDLGCGNG~LL~eLak~ 185 (193)
+..+|||+|||+|.++..|++.
T Consensus 72 ~g~~VlD~G~G~G~~~~~la~~ 93 (226)
T PRK04266 72 KGSKVLYLGAASGTTVSHVSDI 93 (226)
T ss_pred CCCEEEEEccCCCHHHHHHHHh
Confidence 3568999999999999999985
No 72
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=93.60 E-value=0.088 Score=44.48 Aligned_cols=23 Identities=26% Similarity=0.094 Sum_probs=18.8
Q ss_pred CCceeEeeccChHhHHHHHHCCC
Q 029423 165 SWSVLDIGTGNGLLLQELSKQGY 187 (193)
Q Consensus 165 ~~sILDLGCGNG~LL~eLak~GF 187 (193)
..+|||||||+|.+++++...|.
T Consensus 54 ~~~vLDl~~GsG~l~l~~lsr~a 76 (199)
T PRK10909 54 DARCLDCFAGSGALGLEALSRYA 76 (199)
T ss_pred CCEEEEcCCCccHHHHHHHHcCC
Confidence 45899999999999997655554
No 73
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=93.52 E-value=0.051 Score=49.96 Aligned_cols=24 Identities=38% Similarity=0.507 Sum_probs=20.4
Q ss_pred CCCceeEeeccChHhHHHHHHC-CC
Q 029423 164 SSWSVLDIGTGNGLLLQELSKQ-GY 187 (193)
Q Consensus 164 ~~~sILDLGCGNG~LL~eLak~-GF 187 (193)
+..+|||||||+|.++..|++. |.
T Consensus 167 ~g~rVLDIGcG~G~~a~~la~~~g~ 191 (383)
T PRK11705 167 PGMRVLDIGCGWGGLARYAAEHYGV 191 (383)
T ss_pred CCCEEEEeCCCccHHHHHHHHHCCC
Confidence 3568999999999999999985 54
No 74
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=93.37 E-value=0.059 Score=46.58 Aligned_cols=22 Identities=32% Similarity=0.413 Sum_probs=18.8
Q ss_pred CCCceeEeeccChHhHHHHHHC
Q 029423 164 SSWSVLDIGTGNGLLLQELSKQ 185 (193)
Q Consensus 164 ~~~sILDLGCGNG~LL~eLak~ 185 (193)
+..+|||||||+|.+...|++.
T Consensus 52 ~~~~VLDiGcG~G~~a~~la~~ 73 (263)
T PTZ00098 52 ENSKVLDIGSGLGGGCKYINEK 73 (263)
T ss_pred CCCEEEEEcCCCChhhHHHHhh
Confidence 3568999999999999998764
No 75
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=93.36 E-value=0.1 Score=47.52 Aligned_cols=22 Identities=27% Similarity=0.450 Sum_probs=16.7
Q ss_pred CCCceeEeeccChHhHHHHHHC
Q 029423 164 SSWSVLDIGTGNGLLLQELSKQ 185 (193)
Q Consensus 164 ~~~sILDLGCGNG~LL~eLak~ 185 (193)
...+|||||||.|.+..-|+..
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~ 135 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVH 135 (321)
T ss_pred CCceEEEecCCccHHHHHHHhh
Confidence 3578999999988766666554
No 76
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=93.36 E-value=0.054 Score=47.17 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=19.8
Q ss_pred CCceeEeeccChHhHHHHHHCC
Q 029423 165 SWSVLDIGTGNGLLLQELSKQG 186 (193)
Q Consensus 165 ~~sILDLGCGNG~LL~eLak~G 186 (193)
..+|||||||+|.++..+++..
T Consensus 150 ~~~vlDiG~G~G~~~~~~~~~~ 171 (306)
T TIGR02716 150 VKKMIDVGGGIGDISAAMLKHF 171 (306)
T ss_pred CCEEEEeCCchhHHHHHHHHHC
Confidence 4589999999999999999884
No 77
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=93.35 E-value=0.061 Score=44.27 Aligned_cols=23 Identities=35% Similarity=0.416 Sum_probs=19.3
Q ss_pred CCCceeEeeccChHhHHHHHHCC
Q 029423 164 SSWSVLDIGTGNGLLLQELSKQG 186 (193)
Q Consensus 164 ~~~sILDLGCGNG~LL~eLak~G 186 (193)
+..+|||||||+|.+...|++.+
T Consensus 78 ~~~~VLeiG~GsG~~t~~la~~~ 100 (212)
T PRK00312 78 PGDRVLEIGTGSGYQAAVLAHLV 100 (212)
T ss_pred CCCEEEEECCCccHHHHHHHHHh
Confidence 35689999999999988888764
No 78
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=93.34 E-value=0.035 Score=49.96 Aligned_cols=20 Identities=35% Similarity=0.574 Sum_probs=17.8
Q ss_pred CceeEeeccChHhHHHHHHC
Q 029423 166 WSVLDIGTGNGLLLQELSKQ 185 (193)
Q Consensus 166 ~sILDLGCGNG~LL~eLak~ 185 (193)
.++||||||+|+++.+|+..
T Consensus 127 ~~~lDLGCGTGL~G~~lR~~ 146 (287)
T COG4976 127 RRMLDLGCGTGLTGEALRDM 146 (287)
T ss_pred ceeeecccCcCcccHhHHHH
Confidence 47999999999999999864
No 79
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=93.13 E-value=0.068 Score=49.25 Aligned_cols=22 Identities=27% Similarity=0.268 Sum_probs=19.2
Q ss_pred CCCceeEeeccChHhHHHHHHC
Q 029423 164 SSWSVLDIGTGNGLLLQELSKQ 185 (193)
Q Consensus 164 ~~~sILDLGCGNG~LL~eLak~ 185 (193)
+..+|||||||+|.++..|++.
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~ 287 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAEN 287 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHh
Confidence 3568999999999999999875
No 80
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=92.96 E-value=0.14 Score=46.63 Aligned_cols=22 Identities=14% Similarity=-0.014 Sum_probs=19.6
Q ss_pred CceeEeeccChHhHHHHHHCCC
Q 029423 166 WSVLDIGTGNGLLLQELSKQGY 187 (193)
Q Consensus 166 ~sILDLGCGNG~LL~eLak~GF 187 (193)
.+|||||||+|.+...|+..|-
T Consensus 235 ~~vLDL~cG~G~~~l~la~~~~ 256 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAGPDT 256 (374)
T ss_pred CEEEEccCCccHHHHHHhhcCC
Confidence 4799999999999999998764
No 81
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=92.91 E-value=0.08 Score=45.08 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=18.3
Q ss_pred CCCceeEeeccChHhHHHHHHC
Q 029423 164 SSWSVLDIGTGNGLLLQELSKQ 185 (193)
Q Consensus 164 ~~~sILDLGCGNG~LL~eLak~ 185 (193)
+..+|||||||.|.+.+.+++.
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~ 98 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARR 98 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHH
Confidence 3568999999999988877764
No 82
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=92.72 E-value=0.076 Score=45.86 Aligned_cols=20 Identities=25% Similarity=0.386 Sum_probs=18.1
Q ss_pred CceeEeeccChHhHHHHHHC
Q 029423 166 WSVLDIGTGNGLLLQELSKQ 185 (193)
Q Consensus 166 ~sILDLGCGNG~LL~eLak~ 185 (193)
.+|||||||+|.++..|++.
T Consensus 88 ~~vLDlg~GsG~i~l~la~~ 107 (251)
T TIGR03704 88 LVVVDLCCGSGAVGAALAAA 107 (251)
T ss_pred CEEEEecCchHHHHHHHHHh
Confidence 47999999999999999875
No 83
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=92.63 E-value=0.078 Score=47.85 Aligned_cols=23 Identities=30% Similarity=0.378 Sum_probs=20.6
Q ss_pred CCCCceeEeeccChHhHHHHHHC
Q 029423 163 LSSWSVLDIGTGNGLLLQELSKQ 185 (193)
Q Consensus 163 ~~~~sILDLGCGNG~LL~eLak~ 185 (193)
.+..+|||||||=|.|+.-++++
T Consensus 71 ~~G~~lLDiGCGWG~l~~~aA~~ 93 (283)
T COG2230 71 KPGMTLLDIGCGWGGLAIYAAEE 93 (283)
T ss_pred CCCCEEEEeCCChhHHHHHHHHH
Confidence 34679999999999999999987
No 84
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=92.62 E-value=0.062 Score=46.20 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=17.3
Q ss_pred CCCceeEeeccChHhHHHHHHC
Q 029423 164 SSWSVLDIGTGNGLLLQELSKQ 185 (193)
Q Consensus 164 ~~~sILDLGCGNG~LL~eLak~ 185 (193)
+..+|||||||+|.+...|++.
T Consensus 47 ~g~~vLDv~~GtG~~~~~l~~~ 68 (233)
T PF01209_consen 47 PGDRVLDVACGTGDVTRELARR 68 (233)
T ss_dssp S--EEEEET-TTSHHHHHHGGG
T ss_pred CCCEEEEeCCChHHHHHHHHHH
Confidence 3568999999999999999876
No 85
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=92.61 E-value=0.077 Score=46.73 Aligned_cols=21 Identities=14% Similarity=0.319 Sum_probs=18.3
Q ss_pred CCceeEeeccChHhHHHHHHC
Q 029423 165 SWSVLDIGTGNGLLLQELSKQ 185 (193)
Q Consensus 165 ~~sILDLGCGNG~LL~eLak~ 185 (193)
..+|||||||+|.+...|.+.
T Consensus 64 ~~~iLELGcGtG~~t~~Ll~~ 84 (301)
T TIGR03438 64 GCELVELGSGSSRKTRLLLDA 84 (301)
T ss_pred CCeEEecCCCcchhHHHHHHh
Confidence 357999999999988888877
No 86
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=92.54 E-value=0.073 Score=46.35 Aligned_cols=21 Identities=33% Similarity=0.555 Sum_probs=19.0
Q ss_pred CceeEeeccChHhHHHHHHCC
Q 029423 166 WSVLDIGTGNGLLLQELSKQG 186 (193)
Q Consensus 166 ~sILDLGCGNG~LL~eLak~G 186 (193)
.+|||||||+|.++..|++..
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~ 136 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEF 136 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHC
Confidence 479999999999999999864
No 87
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=92.51 E-value=0.097 Score=43.78 Aligned_cols=21 Identities=33% Similarity=0.537 Sum_probs=18.8
Q ss_pred CCceeEeeccChHhHHHHHHC
Q 029423 165 SWSVLDIGTGNGLLLQELSKQ 185 (193)
Q Consensus 165 ~~sILDLGCGNG~LL~eLak~ 185 (193)
..+|||||||+|.+...|++.
T Consensus 77 g~~VLdIG~GsG~~t~~la~~ 97 (212)
T PRK13942 77 GMKVLEIGTGSGYHAAVVAEI 97 (212)
T ss_pred cCEEEEECCcccHHHHHHHHh
Confidence 568999999999999988876
No 88
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=92.41 E-value=0.18 Score=46.28 Aligned_cols=23 Identities=30% Similarity=0.235 Sum_probs=20.1
Q ss_pred CCceeEeeccChHhHHHHHHCCC
Q 029423 165 SWSVLDIGTGNGLLLQELSKQGY 187 (193)
Q Consensus 165 ~~sILDLGCGNG~LL~eLak~GF 187 (193)
..+|||||||.|.++..|++.+.
T Consensus 293 ~~~vLDl~cG~G~~sl~la~~~~ 315 (431)
T TIGR00479 293 EELVVDAYCGVGTFTLPLAKQAK 315 (431)
T ss_pred CCEEEEcCCCcCHHHHHHHHhCC
Confidence 35799999999999999998753
No 89
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=92.32 E-value=0.1 Score=46.60 Aligned_cols=22 Identities=36% Similarity=0.564 Sum_probs=19.8
Q ss_pred CCceeEeeccChHhHHHHHHCC
Q 029423 165 SWSVLDIGTGNGLLLQELSKQG 186 (193)
Q Consensus 165 ~~sILDLGCGNG~LL~eLak~G 186 (193)
+.+|||||||.|.|...|++.+
T Consensus 37 ~~~VLEIG~G~G~LT~~Ll~~~ 58 (294)
T PTZ00338 37 TDTVLEIGPGTGNLTEKLLQLA 58 (294)
T ss_pred cCEEEEecCchHHHHHHHHHhC
Confidence 5689999999999999999875
No 90
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=92.30 E-value=0.18 Score=44.75 Aligned_cols=23 Identities=35% Similarity=0.238 Sum_probs=20.0
Q ss_pred CCceeEeeccChHhHHHHHHCCC
Q 029423 165 SWSVLDIGTGNGLLLQELSKQGY 187 (193)
Q Consensus 165 ~~sILDLGCGNG~LL~eLak~GF 187 (193)
..+|||+|||+|.++.+++..|.
T Consensus 183 g~~vLDp~cGtG~~lieaa~~~~ 205 (329)
T TIGR01177 183 GDRVLDPFCGTGGFLIEAGLMGA 205 (329)
T ss_pred cCEEEECCCCCCHHHHHHHHhCC
Confidence 45899999999999999887764
No 91
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=92.28 E-value=0.1 Score=45.78 Aligned_cols=22 Identities=23% Similarity=0.226 Sum_probs=19.3
Q ss_pred CCceeEeeccChHhHHHHHHCC
Q 029423 165 SWSVLDIGTGNGLLLQELSKQG 186 (193)
Q Consensus 165 ~~sILDLGCGNG~LL~eLak~G 186 (193)
..+|||+|||+|.+...|++..
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~ 143 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAF 143 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHC
Confidence 3579999999999999999863
No 92
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=92.26 E-value=0.087 Score=45.71 Aligned_cols=20 Identities=45% Similarity=0.610 Sum_probs=18.6
Q ss_pred CceeEeeccChHhHHHHHHC
Q 029423 166 WSVLDIGTGNGLLLQELSKQ 185 (193)
Q Consensus 166 ~sILDLGCGNG~LL~eLak~ 185 (193)
.-+|+||||+|.++..||++
T Consensus 50 pi~lEIGfG~G~~l~~~A~~ 69 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKK 69 (227)
T ss_pred cEEEEECCCCCHHHHHHHHH
Confidence 46999999999999999986
No 93
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=91.98 E-value=0.055 Score=48.45 Aligned_cols=23 Identities=48% Similarity=0.569 Sum_probs=20.7
Q ss_pred CCceeEeeccChHhHHHHHHCCC
Q 029423 165 SWSVLDIGTGNGLLLQELSKQGY 187 (193)
Q Consensus 165 ~~sILDLGCGNG~LL~eLak~GF 187 (193)
..-|||||||.|+-...|.+.|.
T Consensus 51 ~~~iLDIGCGsGLSg~vL~~~Gh 73 (270)
T KOG1541|consen 51 SGLILDIGCGSGLSGSVLSDSGH 73 (270)
T ss_pred CcEEEEeccCCCcchheeccCCc
Confidence 45799999999999999999985
No 94
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=91.88 E-value=0.13 Score=47.21 Aligned_cols=21 Identities=29% Similarity=0.567 Sum_probs=18.4
Q ss_pred CCceeEeeccChHhHHHHHHC
Q 029423 165 SWSVLDIGTGNGLLLQELSKQ 185 (193)
Q Consensus 165 ~~sILDLGCGNG~LL~eLak~ 185 (193)
..+|||||||+|.+...|++.
T Consensus 114 ~~~VLDLGcGtG~~~l~La~~ 134 (340)
T PLN02490 114 NLKVVDVGGGTGFTTLGIVKH 134 (340)
T ss_pred CCEEEEEecCCcHHHHHHHHH
Confidence 468999999999999888874
No 95
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=91.87 E-value=0.1 Score=46.14 Aligned_cols=20 Identities=45% Similarity=0.878 Sum_probs=18.7
Q ss_pred ceeEeeccChHhHHHHHHCC
Q 029423 167 SVLDIGTGNGLLLQELSKQG 186 (193)
Q Consensus 167 sILDLGCGNG~LL~eLak~G 186 (193)
+|||||||+|.+...|++.+
T Consensus 113 ~ilDlGTGSG~iai~la~~~ 132 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEG 132 (280)
T ss_pred cEEEecCChHHHHHHHHhhC
Confidence 79999999999999999875
No 96
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=91.73 E-value=0.23 Score=43.22 Aligned_cols=21 Identities=19% Similarity=0.243 Sum_probs=16.1
Q ss_pred CCceeEeeccChH----hHHHHHHC
Q 029423 165 SWSVLDIGTGNGL----LLQELSKQ 185 (193)
Q Consensus 165 ~~sILDLGCGNG~----LL~eLak~ 185 (193)
..+|||+|||+|. |...|++.
T Consensus 100 ~~ri~d~GCgtGee~YslA~~l~e~ 124 (264)
T smart00138 100 RVRIWSAGCSTGEEPYSLAMLLAET 124 (264)
T ss_pred CEEEEeccccCChHHHHHHHHHHHH
Confidence 4789999999996 55556554
No 97
>PHA03412 putative methyltransferase; Provisional
Probab=91.70 E-value=0.092 Score=46.46 Aligned_cols=21 Identities=33% Similarity=0.294 Sum_probs=18.6
Q ss_pred CCceeEeeccChHhHHHHHHC
Q 029423 165 SWSVLDIGTGNGLLLQELSKQ 185 (193)
Q Consensus 165 ~~sILDLGCGNG~LL~eLak~ 185 (193)
..+|||+|||+|.|+..+++.
T Consensus 50 ~grVLDlG~GSG~Lalala~~ 70 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHM 70 (241)
T ss_pred CCEEEEccChHHHHHHHHHHh
Confidence 458999999999999999874
No 98
>PRK06922 hypothetical protein; Provisional
Probab=91.66 E-value=0.12 Score=51.72 Aligned_cols=21 Identities=24% Similarity=0.692 Sum_probs=18.7
Q ss_pred CCceeEeeccChHhHHHHHHC
Q 029423 165 SWSVLDIGTGNGLLLQELSKQ 185 (193)
Q Consensus 165 ~~sILDLGCGNG~LL~eLak~ 185 (193)
..+|||||||+|.++..|++.
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~ 439 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEE 439 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHh
Confidence 468999999999999999875
No 99
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=91.51 E-value=0.11 Score=46.24 Aligned_cols=20 Identities=25% Similarity=0.351 Sum_probs=18.4
Q ss_pred CceeEeeccChHhHHHHHHC
Q 029423 166 WSVLDIGTGNGLLLQELSKQ 185 (193)
Q Consensus 166 ~sILDLGCGNG~LL~eLak~ 185 (193)
.+|||||||+|.++..|++.
T Consensus 135 ~~VLDlG~GsG~iai~la~~ 154 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYA 154 (307)
T ss_pred CEEEEEechhhHHHHHHHHH
Confidence 47999999999999999986
No 100
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=91.20 E-value=0.14 Score=47.47 Aligned_cols=27 Identities=33% Similarity=0.500 Sum_probs=23.1
Q ss_pred CCCCceeEeeccChHhHHHHHHCCCcc
Q 029423 163 LSSWSVLDIGTGNGLLLQELSKQGYTL 189 (193)
Q Consensus 163 ~~~~sILDLGCGNG~LL~eLak~GFs~ 189 (193)
.+...|||||||.|.|+.--||.|...
T Consensus 59 f~dK~VlDVGcGtGILS~F~akAGA~~ 85 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKAGARK 85 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHhCcce
Confidence 445679999999999999999999643
No 101
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=90.90 E-value=0.17 Score=44.35 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=19.9
Q ss_pred CCCceeEeeccChHhHHHHHHC
Q 029423 164 SSWSVLDIGTGNGLLLQELSKQ 185 (193)
Q Consensus 164 ~~~sILDLGCGNG~LL~eLak~ 185 (193)
+..+|||||||+|-+...|++.
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~ 72 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKS 72 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHh
Confidence 3578999999999999999986
No 102
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=90.61 E-value=0.14 Score=44.35 Aligned_cols=20 Identities=25% Similarity=0.518 Sum_probs=16.2
Q ss_pred CceeEeeccChHhHHHHHHC
Q 029423 166 WSVLDIGTGNGLLLQELSKQ 185 (193)
Q Consensus 166 ~sILDLGCGNG~LL~eLak~ 185 (193)
.++|++|||||.|...|+..
T Consensus 45 ~~alEvGCs~G~lT~~LA~r 64 (201)
T PF05401_consen 45 RRALEVGCSIGVLTERLAPR 64 (201)
T ss_dssp EEEEEE--TTSHHHHHHGGG
T ss_pred ceeEecCCCccHHHHHHHHh
Confidence 46999999999999999876
No 103
>PHA03411 putative methyltransferase; Provisional
Probab=90.43 E-value=0.19 Score=45.26 Aligned_cols=21 Identities=29% Similarity=0.294 Sum_probs=18.3
Q ss_pred CCceeEeeccChHhHHHHHHC
Q 029423 165 SWSVLDIGTGNGLLLQELSKQ 185 (193)
Q Consensus 165 ~~sILDLGCGNG~LL~eLak~ 185 (193)
..+|||+|||.|.++..+++.
T Consensus 65 ~grVLDLGcGsGilsl~la~r 85 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHR 85 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHh
Confidence 358999999999999988775
No 104
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=90.41 E-value=0.25 Score=42.35 Aligned_cols=28 Identities=29% Similarity=0.340 Sum_probs=23.2
Q ss_pred CCCCceeEeeccChHhHHHHHHCCCccc
Q 029423 163 LSSWSVLDIGTGNGLLLQELSKQGYTLR 190 (193)
Q Consensus 163 ~~~~sILDLGCGNG~LL~eLak~GFs~~ 190 (193)
.+...++|||||.|++..+++..|-.++
T Consensus 33 ~~g~~l~DIGaGtGsi~iE~a~~~p~~~ 60 (187)
T COG2242 33 RPGDRLWDIGAGTGSITIEWALAGPSGR 60 (187)
T ss_pred CCCCEEEEeCCCccHHHHHHHHhCCCce
Confidence 3467899999999999999997776554
No 105
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=90.39 E-value=0.22 Score=45.20 Aligned_cols=21 Identities=33% Similarity=0.515 Sum_probs=18.9
Q ss_pred CCceeEeeccChHhHHHHHHC
Q 029423 165 SWSVLDIGTGNGLLLQELSKQ 185 (193)
Q Consensus 165 ~~sILDLGCGNG~LL~eLak~ 185 (193)
..+|||||||+|.+...|++.
T Consensus 81 g~~VLDIG~GtG~~a~~LA~~ 101 (322)
T PRK13943 81 GMRVLEIGGGTGYNAAVMSRV 101 (322)
T ss_pred CCEEEEEeCCccHHHHHHHHh
Confidence 468999999999999999875
No 106
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=90.26 E-value=0.2 Score=47.79 Aligned_cols=22 Identities=27% Similarity=0.299 Sum_probs=19.7
Q ss_pred CCCceeEeeccChHhHHHHHHC
Q 029423 164 SSWSVLDIGTGNGLLLQELSKQ 185 (193)
Q Consensus 164 ~~~sILDLGCGNG~LL~eLak~ 185 (193)
...-+||||||+|.++..||+.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~ 368 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKM 368 (506)
T ss_pred CCceEEEECCCchHHHHHHHHh
Confidence 3567999999999999999986
No 107
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=89.55 E-value=0.22 Score=47.54 Aligned_cols=21 Identities=29% Similarity=0.515 Sum_probs=18.5
Q ss_pred CCceeEeeccChHhHHHHHHC
Q 029423 165 SWSVLDIGTGNGLLLQELSKQ 185 (193)
Q Consensus 165 ~~sILDLGCGNG~LL~eLak~ 185 (193)
..+|||||||+|.++..|++.
T Consensus 139 ~~~VLDlG~GsG~iai~la~~ 159 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCE 159 (506)
T ss_pred CCEEEEccCchhHHHHHHHHH
Confidence 357999999999999999875
No 108
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=88.84 E-value=0.3 Score=39.75 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=19.6
Q ss_pred CCCCceeEeeccChHhHHHHHHC
Q 029423 163 LSSWSVLDIGTGNGLLLQELSKQ 185 (193)
Q Consensus 163 ~~~~sILDLGCGNG~LL~eLak~ 185 (193)
....+||+||||.|..+..+++.
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~ 66 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKL 66 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT
T ss_pred cCCceEEEECCccchhHHHHHhc
Confidence 34678999999999999999998
No 109
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=88.67 E-value=0.46 Score=43.94 Aligned_cols=23 Identities=17% Similarity=0.091 Sum_probs=20.2
Q ss_pred CCCceeEeeccChHhHHHHHHCC
Q 029423 164 SSWSVLDIGTGNGLLLQELSKQG 186 (193)
Q Consensus 164 ~~~sILDLGCGNG~LL~eLak~G 186 (193)
+..+|||+|||.|.+...|++.+
T Consensus 244 ~g~~VLDlgaG~G~~t~~la~~~ 266 (427)
T PRK10901 244 NGERVLDACAAPGGKTAHILELA 266 (427)
T ss_pred CCCEEEEeCCCCChHHHHHHHHc
Confidence 35689999999999999999875
No 110
>PRK00811 spermidine synthase; Provisional
Probab=88.28 E-value=0.37 Score=42.33 Aligned_cols=21 Identities=43% Similarity=0.520 Sum_probs=18.7
Q ss_pred CCceeEeeccChHhHHHHHHC
Q 029423 165 SWSVLDIGTGNGLLLQELSKQ 185 (193)
Q Consensus 165 ~~sILDLGCGNG~LL~eLak~ 185 (193)
..+||+||||+|.++.++.+.
T Consensus 77 p~~VL~iG~G~G~~~~~~l~~ 97 (283)
T PRK00811 77 PKRVLIIGGGDGGTLREVLKH 97 (283)
T ss_pred CCEEEEEecCchHHHHHHHcC
Confidence 357999999999999999886
No 111
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=87.86 E-value=0.4 Score=40.88 Aligned_cols=22 Identities=36% Similarity=0.471 Sum_probs=17.6
Q ss_pred CCCceeEeeccChHhHHHHHHC
Q 029423 164 SSWSVLDIGTGNGLLLQELSKQ 185 (193)
Q Consensus 164 ~~~sILDLGCGNG~LL~eLak~ 185 (193)
+..+|||||||.|.+..-|++.
T Consensus 72 pg~~VLeIGtGsGY~aAlla~l 93 (209)
T PF01135_consen 72 PGDRVLEIGTGSGYQAALLAHL 93 (209)
T ss_dssp TT-EEEEES-TTSHHHHHHHHH
T ss_pred CCCEEEEecCCCcHHHHHHHHh
Confidence 4679999999999999988875
No 112
>PRK04457 spermidine synthase; Provisional
Probab=87.80 E-value=0.39 Score=41.77 Aligned_cols=20 Identities=30% Similarity=0.428 Sum_probs=17.9
Q ss_pred CceeEeeccChHhHHHHHHC
Q 029423 166 WSVLDIGTGNGLLLQELSKQ 185 (193)
Q Consensus 166 ~sILDLGCGNG~LL~eLak~ 185 (193)
.+||+||||+|.+...|++.
T Consensus 68 ~~vL~IG~G~G~l~~~l~~~ 87 (262)
T PRK04457 68 QHILQIGLGGGSLAKFIYTY 87 (262)
T ss_pred CEEEEECCCHhHHHHHHHHh
Confidence 47999999999999998875
No 113
>PLN02672 methionine S-methyltransferase
Probab=87.38 E-value=0.38 Score=50.43 Aligned_cols=22 Identities=23% Similarity=0.456 Sum_probs=19.5
Q ss_pred CCceeEeeccChHhHHHHHHCC
Q 029423 165 SWSVLDIGTGNGLLLQELSKQG 186 (193)
Q Consensus 165 ~~sILDLGCGNG~LL~eLak~G 186 (193)
..+|||||||+|.+...|++.+
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~ 140 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKW 140 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHC
Confidence 3579999999999999999874
No 114
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=87.33 E-value=0.41 Score=43.49 Aligned_cols=20 Identities=25% Similarity=0.363 Sum_probs=18.1
Q ss_pred ceeEeeccChHhHHHHHHCC
Q 029423 167 SVLDIGTGNGLLLQELSKQG 186 (193)
Q Consensus 167 sILDLGCGNG~LL~eLak~G 186 (193)
+|||||||+|.+++.|++..
T Consensus 200 ~vlDl~~G~G~~sl~la~~~ 219 (353)
T TIGR02143 200 DLLELYCGNGNFSLALAQNF 219 (353)
T ss_pred cEEEEeccccHHHHHHHHhC
Confidence 69999999999999998763
No 115
>PTZ00146 fibrillarin; Provisional
Probab=87.22 E-value=0.47 Score=43.01 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=19.6
Q ss_pred CCCceeEeeccChHhHHHHHHC
Q 029423 164 SSWSVLDIGTGNGLLLQELSKQ 185 (193)
Q Consensus 164 ~~~sILDLGCGNG~LL~eLak~ 185 (193)
+..+|||||||+|.+...|++.
T Consensus 132 pG~~VLDLGaG~G~~t~~lAdi 153 (293)
T PTZ00146 132 PGSKVLYLGAASGTTVSHVSDL 153 (293)
T ss_pred CCCEEEEeCCcCCHHHHHHHHH
Confidence 3568999999999999999986
No 116
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=86.81 E-value=0.94 Score=41.25 Aligned_cols=47 Identities=28% Similarity=0.360 Sum_probs=28.8
Q ss_pred HHHHHHHHHhhhhhhccCcccccccccCCCccccccccCCCCceeEeeccChHhHHHHHHCC
Q 029423 125 MDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQG 186 (193)
Q Consensus 125 ~d~vv~Wlk~~~~~i~q~~ip~~~d~~~~e~~e~~~k~~~~~sILDLGCGNG~LL~eLak~G 186 (193)
+...-+|+|+.++.. .++. ++ ......+|||||||.|-=|..-.+.+
T Consensus 38 lR~fNNwvKs~LI~~---~~~~----~~--------~~~~~~~VLDl~CGkGGDL~Kw~~~~ 84 (331)
T PF03291_consen 38 LRNFNNWVKSVLIQK---YAKK----VK--------QNRPGLTVLDLCCGKGGDLQKWQKAK 84 (331)
T ss_dssp HHHHHHHHHHHHHHH---HCHC----CC--------CTTTT-EEEEET-TTTTTHHHHHHTT
T ss_pred HHHHhHHHHHHHHHH---HHHh----hh--------ccCCCCeEEEecCCCchhHHHHHhcC
Confidence 567788998875332 2210 00 00246789999999999887776664
No 117
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=85.92 E-value=0.66 Score=40.20 Aligned_cols=21 Identities=43% Similarity=0.559 Sum_probs=18.6
Q ss_pred CceeEeeccChHhHHHHHHCC
Q 029423 166 WSVLDIGTGNGLLLQELSKQG 186 (193)
Q Consensus 166 ~sILDLGCGNG~LL~eLak~G 186 (193)
.+||+||||+|.++.+|.+.+
T Consensus 74 ~~VL~iG~G~G~~~~~ll~~~ 94 (270)
T TIGR00417 74 KHVLVIGGGDGGVLREVLKHK 94 (270)
T ss_pred CEEEEEcCCchHHHHHHHhCC
Confidence 389999999999999988764
No 118
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=85.19 E-value=1.1 Score=41.94 Aligned_cols=28 Identities=25% Similarity=0.364 Sum_probs=25.1
Q ss_pred CCCCceeEeeccChHhHHHHHHCCCccc
Q 029423 163 LSSWSVLDIGTGNGLLLQELSKQGYTLR 190 (193)
Q Consensus 163 ~~~~sILDLGCGNG~LL~eLak~GFs~~ 190 (193)
+++.+||-=|||-|.|+.+|+..||+-+
T Consensus 149 r~ki~iLvPGaGlGRLa~dla~~G~~~q 176 (369)
T KOG2798|consen 149 RTKIRILVPGAGLGRLAYDLACLGFKCQ 176 (369)
T ss_pred ccCceEEecCCCchhHHHHHHHhccccc
Confidence 5678999999999999999999999643
No 119
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=85.05 E-value=0.61 Score=39.00 Aligned_cols=20 Identities=30% Similarity=0.587 Sum_probs=17.2
Q ss_pred CceeEeeccChHhHHHHHHC
Q 029423 166 WSVLDIGTGNGLLLQELSKQ 185 (193)
Q Consensus 166 ~sILDLGCGNG~LL~eLak~ 185 (193)
.+|||||+|.|.++.+|++.
T Consensus 102 ~~vvDvGGG~G~~~~~l~~~ 121 (241)
T PF00891_consen 102 KTVVDVGGGSGHFAIALARA 121 (241)
T ss_dssp SEEEEET-TTSHHHHHHHHH
T ss_pred cEEEeccCcchHHHHHHHHH
Confidence 47999999999999999875
No 120
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=85.04 E-value=0.5 Score=31.37 Aligned_cols=17 Identities=59% Similarity=0.886 Sum_probs=13.1
Q ss_pred eeEeeccChHh--HHHHHH
Q 029423 168 VLDIGTGNGLL--LQELSK 184 (193)
Q Consensus 168 ILDLGCGNG~L--L~eLak 184 (193)
|||+|||.|.. +..+..
T Consensus 52 ~ld~~~g~g~~~~~~~~~~ 70 (257)
T COG0500 52 VLDIGCGTGRLALLARLGG 70 (257)
T ss_pred eEEecCCcCHHHHHHHhCC
Confidence 99999999994 454444
No 121
>PLN02366 spermidine synthase
Probab=84.74 E-value=0.74 Score=41.47 Aligned_cols=21 Identities=33% Similarity=0.632 Sum_probs=19.0
Q ss_pred CCceeEeeccChHhHHHHHHC
Q 029423 165 SWSVLDIGTGNGLLLQELSKQ 185 (193)
Q Consensus 165 ~~sILDLGCGNG~LL~eLak~ 185 (193)
..+||+||||.|.++.+|++.
T Consensus 92 pkrVLiIGgG~G~~~rellk~ 112 (308)
T PLN02366 92 PKKVLVVGGGDGGVLREIARH 112 (308)
T ss_pred CCeEEEEcCCccHHHHHHHhC
Confidence 357999999999999999986
No 122
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=83.85 E-value=1.5 Score=38.13 Aligned_cols=20 Identities=35% Similarity=0.330 Sum_probs=16.9
Q ss_pred CCceeEeeccChHhHHHHHH
Q 029423 165 SWSVLDIGTGNGLLLQELSK 184 (193)
Q Consensus 165 ~~sILDLGCGNG~LL~eLak 184 (193)
..+|||-.||.|.||.++.+
T Consensus 47 ~~~VlDPacGsG~fL~~~~~ 66 (311)
T PF02384_consen 47 GDSVLDPACGSGGFLVAAME 66 (311)
T ss_dssp TEEEEETT-TTSHHHHHHHH
T ss_pred cceeechhhhHHHHHHHHHH
Confidence 45799999999999999876
No 123
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=83.69 E-value=0.75 Score=41.87 Aligned_cols=20 Identities=25% Similarity=0.416 Sum_probs=18.1
Q ss_pred CceeEeeccChHhHHHHHHC
Q 029423 166 WSVLDIGTGNGLLLQELSKQ 185 (193)
Q Consensus 166 ~sILDLGCGNG~LL~eLak~ 185 (193)
.+||||+||+|.|++.|++.
T Consensus 208 ~~vLDl~~G~G~~sl~la~~ 227 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARN 227 (362)
T ss_pred CeEEEEeccccHHHHHHHhh
Confidence 36999999999999999876
No 124
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=83.21 E-value=1.4 Score=40.81 Aligned_cols=21 Identities=19% Similarity=0.144 Sum_probs=18.6
Q ss_pred CCceeEeeccChHhHHHHHHC
Q 029423 165 SWSVLDIGTGNGLLLQELSKQ 185 (193)
Q Consensus 165 ~~sILDLGCGNG~LL~eLak~ 185 (193)
..+|||+|||+|.+...|++.
T Consensus 251 g~~VLDlgaG~G~~t~~la~~ 271 (444)
T PRK14902 251 GDTVLDACAAPGGKTTHIAEL 271 (444)
T ss_pred CCEEEEeCCCCCHHHHHHHHH
Confidence 457999999999999999875
No 125
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=82.80 E-value=1.2 Score=39.26 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=13.1
Q ss_pred CCceeEeeccChHhHHHHHHCCCc
Q 029423 165 SWSVLDIGTGNGLLLQELSKQGYT 188 (193)
Q Consensus 165 ~~sILDLGCGNG~LL~eLak~GFs 188 (193)
+..|-|+|||.+.|...+. .+++
T Consensus 73 ~~viaD~GCGdA~la~~~~-~~~~ 95 (219)
T PF05148_consen 73 SLVIADFGCGDAKLAKAVP-NKHK 95 (219)
T ss_dssp TS-EEEES-TT-HHHHH---S---
T ss_pred CEEEEECCCchHHHHHhcc-cCce
Confidence 5789999999999997764 4543
No 126
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=82.42 E-value=0.7 Score=44.97 Aligned_cols=21 Identities=24% Similarity=0.333 Sum_probs=19.3
Q ss_pred ceeEeeccChHhHHHHHHCCC
Q 029423 167 SVLDIGTGNGLLLQELSKQGY 187 (193)
Q Consensus 167 sILDLGCGNG~LL~eLak~GF 187 (193)
.+||+|||.|+|+..|.+.|-
T Consensus 120 ~~LDvGcG~aSF~a~l~~r~V 140 (506)
T PF03141_consen 120 TALDVGCGVASFGAYLLERNV 140 (506)
T ss_pred EEEeccceeehhHHHHhhCCc
Confidence 489999999999999999875
No 127
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=82.34 E-value=0.88 Score=40.76 Aligned_cols=28 Identities=39% Similarity=0.520 Sum_probs=24.7
Q ss_pred CCCCceeEeeccChHhHHHHHHCCCccc
Q 029423 163 LSSWSVLDIGTGNGLLLQELSKQGYTLR 190 (193)
Q Consensus 163 ~~~~sILDLGCGNG~LL~eLak~GFs~~ 190 (193)
+.+.+||-=|||-|.|..+|++.||..+
T Consensus 55 ~~~~~VLVPGsGLGRLa~Eia~~G~~~~ 82 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEIAKLGYAVQ 82 (270)
T ss_pred CCccEEEEcCCCcchHHHHHhhccceEE
Confidence 4567999999999999999999999644
No 128
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=82.15 E-value=1 Score=44.65 Aligned_cols=24 Identities=13% Similarity=0.011 Sum_probs=21.1
Q ss_pred CCceeEeeccChHhHHHHHHCCCc
Q 029423 165 SWSVLDIGTGNGLLLQELSKQGYT 188 (193)
Q Consensus 165 ~~sILDLGCGNG~LL~eLak~GFs 188 (193)
..+|||||||+|.+...+++.|-.
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~Ga~ 562 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALGGAK 562 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHCCCC
Confidence 458999999999999999998753
No 129
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=81.32 E-value=2.1 Score=36.51 Aligned_cols=20 Identities=20% Similarity=0.310 Sum_probs=15.4
Q ss_pred CCceeEeeccChHhHHHHHH
Q 029423 165 SWSVLDIGTGNGLLLQELSK 184 (193)
Q Consensus 165 ~~sILDLGCGNG~LL~eLak 184 (193)
+..++|||||.|.+.++.+-
T Consensus 43 ~dvF~DlGSG~G~~v~~aal 62 (205)
T PF08123_consen 43 DDVFYDLGSGVGNVVFQAAL 62 (205)
T ss_dssp T-EEEEES-TTSHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHH
Confidence 56899999999999887763
No 130
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=81.21 E-value=1.1 Score=40.78 Aligned_cols=21 Identities=33% Similarity=0.560 Sum_probs=19.3
Q ss_pred CCceeEeeccChHhHHHHHHC
Q 029423 165 SWSVLDIGTGNGLLLQELSKQ 185 (193)
Q Consensus 165 ~~sILDLGCGNG~LL~eLak~ 185 (193)
...+|||||-||.|...+||.
T Consensus 59 ~~~~LDIGCNsG~lt~~iak~ 79 (288)
T KOG2899|consen 59 PKQALDIGCNSGFLTLSIAKD 79 (288)
T ss_pred cceeEeccCCcchhHHHHHHh
Confidence 467999999999999999986
No 131
>PRK03612 spermidine synthase; Provisional
Probab=81.19 E-value=1.3 Score=42.46 Aligned_cols=22 Identities=41% Similarity=0.581 Sum_probs=19.2
Q ss_pred CCceeEeeccChHhHHHHHHCC
Q 029423 165 SWSVLDIGTGNGLLLQELSKQG 186 (193)
Q Consensus 165 ~~sILDLGCGNG~LL~eLak~G 186 (193)
..+||+||||+|.++.++.+.+
T Consensus 298 ~~rVL~IG~G~G~~~~~ll~~~ 319 (521)
T PRK03612 298 PRRVLVLGGGDGLALREVLKYP 319 (521)
T ss_pred CCeEEEEcCCccHHHHHHHhCC
Confidence 3579999999999999998863
No 132
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=80.39 E-value=1.4 Score=41.02 Aligned_cols=23 Identities=17% Similarity=0.011 Sum_probs=19.3
Q ss_pred CCceeEeeccChHhHHHHHHCCC
Q 029423 165 SWSVLDIGTGNGLLLQELSKQGY 187 (193)
Q Consensus 165 ~~sILDLGCGNG~LL~eLak~GF 187 (193)
..+|||||||+|.++..++..|.
T Consensus 221 g~rVLDlfsgtG~~~l~aa~~ga 243 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALMGGC 243 (396)
T ss_pred CCeEEEeccCCCHHHHHHHhCCC
Confidence 46899999999999988776664
No 133
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=80.33 E-value=1.4 Score=38.12 Aligned_cols=21 Identities=24% Similarity=0.235 Sum_probs=18.5
Q ss_pred CCceeEeeccChHhHHHHHHC
Q 029423 165 SWSVLDIGTGNGLLLQELSKQ 185 (193)
Q Consensus 165 ~~sILDLGCGNG~LL~eLak~ 185 (193)
..+|||+|||.|.....|++.
T Consensus 72 g~~VLDl~ag~G~kt~~la~~ 92 (264)
T TIGR00446 72 PERVLDMAAAPGGKTTQISAL 92 (264)
T ss_pred cCEEEEECCCchHHHHHHHHH
Confidence 468999999999999988874
No 134
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=80.13 E-value=1.1 Score=42.34 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=18.6
Q ss_pred CCceeEeeccChHhHHHHHHC
Q 029423 165 SWSVLDIGTGNGLLLQELSKQ 185 (193)
Q Consensus 165 ~~sILDLGCGNG~LL~eLak~ 185 (193)
..+|||.+||.|.|+..+++.
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~ 52 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKK 52 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHH
Confidence 468999999999999999864
No 135
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=79.97 E-value=1.5 Score=38.12 Aligned_cols=22 Identities=36% Similarity=0.516 Sum_probs=19.0
Q ss_pred CCCceeEeeccChHhHHHHHHC
Q 029423 164 SSWSVLDIGTGNGLLLQELSKQ 185 (193)
Q Consensus 164 ~~~sILDLGCGNG~LL~eLak~ 185 (193)
+..+||+||||.|....-|++.
T Consensus 72 ~g~~VLEIGtGsGY~aAvla~l 93 (209)
T COG2518 72 PGDRVLEIGTGSGYQAAVLARL 93 (209)
T ss_pred CCCeEEEECCCchHHHHHHHHH
Confidence 4578999999999998888875
No 136
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=79.72 E-value=0.79 Score=39.07 Aligned_cols=20 Identities=30% Similarity=0.483 Sum_probs=16.2
Q ss_pred CCCceeEeeccChHhHHHHH
Q 029423 164 SSWSVLDIGTGNGLLLQELS 183 (193)
Q Consensus 164 ~~~sILDLGCGNG~LL~eLa 183 (193)
.+.+|+|||||.|.|.++..
T Consensus 48 Egkkl~DLgcgcGmLs~a~s 67 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFS 67 (185)
T ss_pred cCcchhhhcCchhhhHHHhh
Confidence 35689999999999996543
No 137
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=79.15 E-value=2.4 Score=39.19 Aligned_cols=21 Identities=14% Similarity=0.099 Sum_probs=18.2
Q ss_pred CCceeEeeccChHhHHHHHHC
Q 029423 165 SWSVLDIGTGNGLLLQELSKQ 185 (193)
Q Consensus 165 ~~sILDLGCGNG~LL~eLak~ 185 (193)
..+|||+|||.|.....|++.
T Consensus 239 g~~VLDlcag~G~kt~~la~~ 259 (426)
T TIGR00563 239 EETILDACAAPGGKTTHILEL 259 (426)
T ss_pred CCeEEEeCCCccHHHHHHHHH
Confidence 468999999999998888874
No 138
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=79.03 E-value=2.1 Score=40.54 Aligned_cols=26 Identities=27% Similarity=0.235 Sum_probs=21.9
Q ss_pred CCCceeEeeccChHhHHHHHHCCCcc
Q 029423 164 SSWSVLDIGTGNGLLLQELSKQGYTL 189 (193)
Q Consensus 164 ~~~sILDLGCGNG~LL~eLak~GFs~ 189 (193)
+..+|||+=||+|.|+..|++.....
T Consensus 293 ~~~~vlDlYCGvG~f~l~lA~~~~~V 318 (432)
T COG2265 293 GGERVLDLYCGVGTFGLPLAKRVKKV 318 (432)
T ss_pred CCCEEEEeccCCChhhhhhcccCCEE
Confidence 34689999999999999999876543
No 139
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=78.48 E-value=2 Score=39.03 Aligned_cols=20 Identities=35% Similarity=0.479 Sum_probs=17.5
Q ss_pred ceeEeeccChHhHHHHHHCC
Q 029423 167 SVLDIGTGNGLLLQELSKQG 186 (193)
Q Consensus 167 sILDLGCGNG~LL~eLak~G 186 (193)
.||||=||.|.|+..|++.+
T Consensus 199 ~vlDlycG~G~fsl~la~~~ 218 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKKA 218 (352)
T ss_dssp EEEEES-TTTCCHHHHHCCS
T ss_pred cEEEEeecCCHHHHHHHhhC
Confidence 69999999999999999864
No 140
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=78.20 E-value=1.7 Score=41.56 Aligned_cols=26 Identities=31% Similarity=0.486 Sum_probs=21.8
Q ss_pred CCCCceeEeeccChHhHHHHHHCCCc
Q 029423 163 LSSWSVLDIGTGNGLLLQELSKQGYT 188 (193)
Q Consensus 163 ~~~~sILDLGCGNG~LL~eLak~GFs 188 (193)
....-|||||||.|.|++--++.|-.
T Consensus 176 F~~kiVlDVGaGSGILS~FAaqAGA~ 201 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAAQAGAK 201 (517)
T ss_pred cCCcEEEEecCCccHHHHHHHHhCcc
Confidence 34567999999999999998888854
No 141
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=78.10 E-value=1.3 Score=39.92 Aligned_cols=19 Identities=32% Similarity=0.601 Sum_probs=15.6
Q ss_pred ceeEeeccChHhHHHHHHC
Q 029423 167 SVLDIGTGNGLLLQELSKQ 185 (193)
Q Consensus 167 sILDLGCGNG~LL~eLak~ 185 (193)
.++|||||||.-.+-++..
T Consensus 36 ~a~DvG~G~Gqa~~~iae~ 54 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEH 54 (261)
T ss_pred eEEEeccCCCcchHHHHHh
Confidence 7999999999777766654
No 142
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=77.70 E-value=1.8 Score=41.04 Aligned_cols=22 Identities=36% Similarity=0.474 Sum_probs=16.8
Q ss_pred CCceeEeeccChHhHHHHHHCC
Q 029423 165 SWSVLDIGTGNGLLLQELSKQG 186 (193)
Q Consensus 165 ~~sILDLGCGNG~LL~eLak~G 186 (193)
...|||||||.|.|...-++.|
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~ 208 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAG 208 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTT
T ss_pred ceEEEEeCCCccHHHHHHHHHH
Confidence 4579999999999987776665
No 143
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=75.23 E-value=1.4 Score=39.17 Aligned_cols=21 Identities=38% Similarity=0.525 Sum_probs=18.4
Q ss_pred CCceeEeeccChHhHHHHHHC
Q 029423 165 SWSVLDIGTGNGLLLQELSKQ 185 (193)
Q Consensus 165 ~~sILDLGCGNG~LL~eLak~ 185 (193)
+.-+-|||||=|-||.+|+-.
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~ 81 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPK 81 (249)
T ss_pred cceEEeeccCccchhhhcccc
Confidence 456999999999999999765
No 144
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=74.38 E-value=2.6 Score=39.28 Aligned_cols=21 Identities=19% Similarity=0.181 Sum_probs=17.2
Q ss_pred CCCceeEeeccChHhHHHHHH
Q 029423 164 SSWSVLDIGTGNGLLLQELSK 184 (193)
Q Consensus 164 ~~~sILDLGCGNG~LL~eLak 184 (193)
+..+|||+|||.|.....|++
T Consensus 250 ~g~~VLDlgaG~G~kt~~la~ 270 (445)
T PRK14904 250 PGSTVLDLCAAPGGKSTFMAE 270 (445)
T ss_pred CCCEEEEECCCCCHHHHHHHH
Confidence 456899999999987777765
No 145
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=73.20 E-value=2.3 Score=39.29 Aligned_cols=21 Identities=33% Similarity=0.533 Sum_probs=17.6
Q ss_pred CCceeEeeccChHhHHHHHHC
Q 029423 165 SWSVLDIGTGNGLLLQELSKQ 185 (193)
Q Consensus 165 ~~sILDLGCGNG~LL~eLak~ 185 (193)
...|||||||.|-++..|...
T Consensus 149 ~~~ildlgtGSGaIslsll~~ 169 (328)
T KOG2904|consen 149 HTHILDLGTGSGAISLSLLHG 169 (328)
T ss_pred cceEEEecCCccHHHHHHHhc
Confidence 347999999999998888764
No 146
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=69.29 E-value=3.8 Score=36.09 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=17.0
Q ss_pred CCCCceeEeeccChHhHHHHHHC
Q 029423 163 LSSWSVLDIGTGNGLLLQELSKQ 185 (193)
Q Consensus 163 ~~~~sILDLGCGNG~LL~eLak~ 185 (193)
.+..+||+.|+|.|.|...|+..
T Consensus 39 ~pG~~VlEaGtGSG~lt~~l~r~ 61 (247)
T PF08704_consen 39 RPGSRVLEAGTGSGSLTHALARA 61 (247)
T ss_dssp -TT-EEEEE--TTSHHHHHHHHH
T ss_pred CCCCEEEEecCCcHHHHHHHHHH
Confidence 45779999999999999999964
No 147
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=68.80 E-value=3.9 Score=37.98 Aligned_cols=22 Identities=14% Similarity=0.115 Sum_probs=19.3
Q ss_pred CCCceeEeeccChHhHHHHHHC
Q 029423 164 SSWSVLDIGTGNGLLLQELSKQ 185 (193)
Q Consensus 164 ~~~sILDLGCGNG~LL~eLak~ 185 (193)
+..+|||+|||.|.....|++.
T Consensus 252 ~g~~VLDl~ag~G~kt~~la~~ 273 (434)
T PRK14901 252 PGEVILDACAAPGGKTTHIAEL 273 (434)
T ss_pred CcCEEEEeCCCCchhHHHHHHH
Confidence 4578999999999999988875
No 148
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=68.19 E-value=8 Score=34.49 Aligned_cols=41 Identities=22% Similarity=0.327 Sum_probs=30.2
Q ss_pred eecCCchH-HHHHHHHHhhhhhhccCcccccccccCCCccccccccCCCCceeEeeccChHhHHHHHH
Q 029423 118 VWFGADVM-DVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSK 184 (193)
Q Consensus 118 iWFGed~~-d~vv~Wlk~~~~~i~q~~ip~~~d~~~~e~~e~~~k~~~~~sILDLGCGNG~LL~eLak 184 (193)
+-++.-.| ..++++|..++ ++.+++||||.|.|.|..-++.
T Consensus 61 ~~iSAp~mha~~le~L~~~L--------------------------~pG~s~LdvGsGSGYLt~~~~~ 102 (237)
T KOG1661|consen 61 LTISAPHMHATALEYLDDHL--------------------------QPGASFLDVGSGSGYLTACFAR 102 (237)
T ss_pred eEEcchHHHHHHHHHHHHhh--------------------------ccCcceeecCCCccHHHHHHHH
Confidence 45666665 66777775432 4578999999999999887763
No 149
>PRK01581 speE spermidine synthase; Validated
Probab=67.77 E-value=4.3 Score=38.20 Aligned_cols=21 Identities=43% Similarity=0.590 Sum_probs=18.5
Q ss_pred CCceeEeeccChHhHHHHHHC
Q 029423 165 SWSVLDIGTGNGLLLQELSKQ 185 (193)
Q Consensus 165 ~~sILDLGCGNG~LL~eLak~ 185 (193)
..+||+||||.|.++.++.+.
T Consensus 151 PkrVLIIGgGdG~tlrelLk~ 171 (374)
T PRK01581 151 PKRVLILGGGDGLALREVLKY 171 (374)
T ss_pred CCEEEEECCCHHHHHHHHHhc
Confidence 358999999999999999875
No 150
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=67.58 E-value=4.4 Score=34.64 Aligned_cols=20 Identities=25% Similarity=0.262 Sum_probs=16.1
Q ss_pred CCceeEeeccChHhHHHHHH
Q 029423 165 SWSVLDIGTGNGLLLQELSK 184 (193)
Q Consensus 165 ~~sILDLGCGNG~LL~eLak 184 (193)
..+||+||||.|.-...|+.
T Consensus 69 ~~~vLEiGt~~G~s~l~la~ 88 (234)
T PLN02781 69 AKNTLEIGVFTGYSLLTTAL 88 (234)
T ss_pred CCEEEEecCcccHHHHHHHH
Confidence 45899999999987666665
No 151
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=67.29 E-value=8 Score=36.19 Aligned_cols=21 Identities=19% Similarity=0.185 Sum_probs=17.8
Q ss_pred CCceeEeeccChHhHHHHHHC
Q 029423 165 SWSVLDIGTGNGLLLQELSKQ 185 (193)
Q Consensus 165 ~~sILDLGCGNG~LL~eLak~ 185 (193)
..+|||+|||.|.....|++.
T Consensus 238 g~~VLD~cagpGgkt~~la~~ 258 (431)
T PRK14903 238 GLRVLDTCAAPGGKTTAIAEL 258 (431)
T ss_pred CCEEEEeCCCccHHHHHHHHH
Confidence 458999999999988887764
No 152
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=67.13 E-value=2.5 Score=38.72 Aligned_cols=16 Identities=44% Similarity=0.596 Sum_probs=13.4
Q ss_pred CCceeEeeccChHhHH
Q 029423 165 SWSVLDIGTGNGLLLQ 180 (193)
Q Consensus 165 ~~sILDLGCGNG~LL~ 180 (193)
...+||+|||||..+.
T Consensus 46 gsv~~d~gCGngky~~ 61 (293)
T KOG1331|consen 46 GSVGLDVGCGNGKYLG 61 (293)
T ss_pred cceeeecccCCcccCc
Confidence 5679999999997654
No 153
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=65.73 E-value=4 Score=34.27 Aligned_cols=17 Identities=47% Similarity=0.690 Sum_probs=15.0
Q ss_pred ceeEeeccChHhHHHHH
Q 029423 167 SVLDIGTGNGLLLQELS 183 (193)
Q Consensus 167 sILDLGCGNG~LL~eLa 183 (193)
+|||||+|.|.=+..|+
T Consensus 51 ~~lDiGSGaGfPGipLa 67 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLA 67 (184)
T ss_dssp EEEEETSTTTTTHHHHH
T ss_pred eEEecCCCCCChhHHHH
Confidence 79999999998887775
No 154
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=65.24 E-value=4.3 Score=37.65 Aligned_cols=20 Identities=25% Similarity=0.164 Sum_probs=18.2
Q ss_pred CceeEeeccChHhHHHHHHC
Q 029423 166 WSVLDIGTGNGLLLQELSKQ 185 (193)
Q Consensus 166 ~sILDLGCGNG~LL~eLak~ 185 (193)
.+|||++||.|.++..++++
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~ 78 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALE 78 (382)
T ss_pred CEEEECCCcccHHHHHHHHH
Confidence 47999999999999999875
No 155
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=65.23 E-value=4.9 Score=33.42 Aligned_cols=24 Identities=33% Similarity=0.338 Sum_probs=19.4
Q ss_pred CCceeEeeccChHhHHHHHHCCCc
Q 029423 165 SWSVLDIGTGNGLLLQELSKQGYT 188 (193)
Q Consensus 165 ~~sILDLGCGNG~LL~eLak~GFs 188 (193)
+.+||||-||+|.|+++-..+|..
T Consensus 43 g~~vLDLFaGSGalGlEALSRGA~ 66 (183)
T PF03602_consen 43 GARVLDLFAGSGALGLEALSRGAK 66 (183)
T ss_dssp T-EEEETT-TTSHHHHHHHHTT-S
T ss_pred CCeEEEcCCccCccHHHHHhcCCC
Confidence 578999999999999999999874
No 156
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=61.00 E-value=5.2 Score=35.82 Aligned_cols=15 Identities=53% Similarity=0.536 Sum_probs=9.5
Q ss_pred CCceeEeeccChHhH
Q 029423 165 SWSVLDIGTGNGLLL 179 (193)
Q Consensus 165 ~~sILDLGCGNG~LL 179 (193)
..+|||||||==-|.
T Consensus 106 p~sVlDigCGlNPla 120 (251)
T PF07091_consen 106 PDSVLDIGCGLNPLA 120 (251)
T ss_dssp -SEEEEET-TTCHHH
T ss_pred CchhhhhhccCCcee
Confidence 568999999954433
No 157
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=60.44 E-value=6.6 Score=35.32 Aligned_cols=22 Identities=36% Similarity=0.517 Sum_probs=19.6
Q ss_pred CCCCceeEeeccChHhHHHHHH
Q 029423 163 LSSWSVLDIGTGNGLLLQELSK 184 (193)
Q Consensus 163 ~~~~sILDLGCGNG~LL~eLak 184 (193)
.+..+||+.|+|.|.|...|+.
T Consensus 93 ~pg~rVlEAGtGSG~lt~~La~ 114 (256)
T COG2519 93 SPGSRVLEAGTGSGALTAYLAR 114 (256)
T ss_pred CCCCEEEEcccCchHHHHHHHH
Confidence 3467999999999999999995
No 158
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=57.90 E-value=7 Score=35.76 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=20.6
Q ss_pred CCceeEeeccChHhHHHHHHCCC
Q 029423 165 SWSVLDIGTGNGLLLQELSKQGY 187 (193)
Q Consensus 165 ~~sILDLGCGNG~LL~eLak~GF 187 (193)
...++|||||-|++..-|..+|-
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~v 95 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGV 95 (325)
T ss_pred CcceeecccchhhhhHHHHhcch
Confidence 45799999999999999999984
No 159
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=56.18 E-value=6.8 Score=36.88 Aligned_cols=18 Identities=17% Similarity=0.442 Sum_probs=14.5
Q ss_pred CCceeEeeccChHhHHHH
Q 029423 165 SWSVLDIGTGNGLLLQEL 182 (193)
Q Consensus 165 ~~sILDLGCGNG~LL~eL 182 (193)
..+|+|+|||.|.+.+.+
T Consensus 64 ~~~iaDlGcs~G~ntl~~ 81 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHI 81 (386)
T ss_pred ceeEEEecCCCCccHHHH
Confidence 568999999999766544
No 160
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=55.91 E-value=8.4 Score=33.77 Aligned_cols=20 Identities=30% Similarity=0.436 Sum_probs=17.5
Q ss_pred CceeEeeccChHhHHHHHHC
Q 029423 166 WSVLDIGTGNGLLLQELSKQ 185 (193)
Q Consensus 166 ~sILDLGCGNG~LL~eLak~ 185 (193)
.-+|+||||.|.....|++.
T Consensus 45 ~i~lEIG~GSGvvstfL~~~ 64 (209)
T KOG3191|consen 45 EICLEIGCGSGVVSTFLASV 64 (209)
T ss_pred eeEEEecCCcchHHHHHHHh
Confidence 35899999999999999875
No 161
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=55.73 E-value=10 Score=35.62 Aligned_cols=26 Identities=19% Similarity=0.337 Sum_probs=23.0
Q ss_pred CCCCceeEeeccChHhHHHHHHCCCc
Q 029423 163 LSSWSVLDIGTGNGLLLQELSKQGYT 188 (193)
Q Consensus 163 ~~~~sILDLGCGNG~LL~eLak~GFs 188 (193)
.+..++|||||+.|-+...|.+.|..
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~~ 235 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGMF 235 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCCE
Confidence 45678999999999999999999863
No 162
>PLN03075 nicotianamine synthase; Provisional
Probab=55.09 E-value=10 Score=34.40 Aligned_cols=12 Identities=25% Similarity=0.202 Sum_probs=10.4
Q ss_pred CCceeEeeccCh
Q 029423 165 SWSVLDIGTGNG 176 (193)
Q Consensus 165 ~~sILDLGCGNG 176 (193)
..+|||||||-|
T Consensus 124 p~~VldIGcGpg 135 (296)
T PLN03075 124 PTKVAFVGSGPL 135 (296)
T ss_pred CCEEEEECCCCc
Confidence 458999999977
No 163
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=55.01 E-value=7.9 Score=38.18 Aligned_cols=21 Identities=52% Similarity=0.688 Sum_probs=18.3
Q ss_pred CceeEeeccChHhHHHHHHCC
Q 029423 166 WSVLDIGTGNGLLLQELSKQG 186 (193)
Q Consensus 166 ~sILDLGCGNG~LL~eLak~G 186 (193)
.-|||||||+|+|+.--+..|
T Consensus 68 v~vLdigtGTGLLSmMAvrag 88 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAG 88 (636)
T ss_pred EEEEEccCCccHHHHHHHHhc
Confidence 469999999999998777776
No 164
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=53.68 E-value=10 Score=35.04 Aligned_cols=17 Identities=18% Similarity=0.386 Sum_probs=14.0
Q ss_pred CCCceeEeeccChHhHH
Q 029423 164 SSWSVLDIGTGNGLLLQ 180 (193)
Q Consensus 164 ~~~sILDLGCGNG~LL~ 180 (193)
.+..|-|+|||-+.+..
T Consensus 180 ~~~vIaD~GCGEakiA~ 196 (325)
T KOG3045|consen 180 KNIVIADFGCGEAKIAS 196 (325)
T ss_pred CceEEEecccchhhhhh
Confidence 36789999999998764
No 165
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=51.53 E-value=9.1 Score=33.27 Aligned_cols=19 Identities=42% Similarity=0.571 Sum_probs=16.5
Q ss_pred CCceeEeeccChHhHHHHH
Q 029423 165 SWSVLDIGTGNGLLLQELS 183 (193)
Q Consensus 165 ~~sILDLGCGNG~LL~eLa 183 (193)
..+|+|||+|.|.=+..|+
T Consensus 68 ~~~~~DIGSGaGfPGipLA 86 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLA 86 (215)
T ss_pred CCEEEEeCCCCCCchhhHH
Confidence 3689999999999888876
No 166
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=46.38 E-value=17 Score=31.92 Aligned_cols=20 Identities=40% Similarity=0.552 Sum_probs=16.5
Q ss_pred CCceeEeeccChHhHHHHHH
Q 029423 165 SWSVLDIGTGNGLLLQELSK 184 (193)
Q Consensus 165 ~~sILDLGCGNG~LL~eLak 184 (193)
..+|||+|||-|.-+.+..+
T Consensus 34 P~~vLD~GsGpGta~wAa~~ 53 (274)
T PF09243_consen 34 PRSVLDFGSGPGTALWAARE 53 (274)
T ss_pred CceEEEecCChHHHHHHHHH
Confidence 45899999999998877655
No 167
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=46.24 E-value=10 Score=34.51 Aligned_cols=23 Identities=30% Similarity=0.271 Sum_probs=19.4
Q ss_pred CCCceeEeeccChHhHHHHHHCC
Q 029423 164 SSWSVLDIGTGNGLLLQELSKQG 186 (193)
Q Consensus 164 ~~~sILDLGCGNG~LL~eLak~G 186 (193)
...+|||||||-++.....-..|
T Consensus 116 ~~k~vLELgCg~~Lp~i~~~~~~ 138 (282)
T KOG2920|consen 116 SGKRVLELGCGAALPGIFAFVKG 138 (282)
T ss_pred cCceeEecCCcccccchhhhhhc
Confidence 34689999999999988877776
No 168
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=44.64 E-value=19 Score=33.34 Aligned_cols=28 Identities=29% Similarity=0.350 Sum_probs=22.8
Q ss_pred CCCCceeEeeccChHhHHHHHHC-CCccc
Q 029423 163 LSSWSVLDIGTGNGLLLQELSKQ-GYTLR 190 (193)
Q Consensus 163 ~~~~sILDLGCGNG~LL~eLak~-GFs~~ 190 (193)
.+...||.-|||.|+|+..|++. |=+|+
T Consensus 104 ~PGsvV~EsGTGSGSlShaiaraV~ptGh 132 (314)
T KOG2915|consen 104 RPGSVVLESGTGSGSLSHAIARAVAPTGH 132 (314)
T ss_pred CCCCEEEecCCCcchHHHHHHHhhCcCcc
Confidence 45678999999999999999985 44444
No 169
>KOG1882 consensus Transcriptional regulator SNIP1, contains FHA domain [Signal transduction mechanisms]
Probab=44.52 E-value=8.5 Score=35.04 Aligned_cols=15 Identities=40% Similarity=0.822 Sum_probs=13.1
Q ss_pred CceeEeeccChHhHH
Q 029423 166 WSVLDIGTGNGLLLQ 180 (193)
Q Consensus 166 ~sILDLGCGNG~LL~ 180 (193)
.-|+|||.|||.+|-
T Consensus 241 pYiiDLgS~NgTfLN 255 (293)
T KOG1882|consen 241 PYIIDLGSGNGTFLN 255 (293)
T ss_pred eEEEecCCCCcceec
Confidence 459999999999984
No 170
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=43.09 E-value=21 Score=33.12 Aligned_cols=27 Identities=30% Similarity=0.444 Sum_probs=23.2
Q ss_pred CCCCceeEeeccChHhHHHHHHCCCcc
Q 029423 163 LSSWSVLDIGTGNGLLLQELSKQGYTL 189 (193)
Q Consensus 163 ~~~~sILDLGCGNG~LL~eLak~GFs~ 189 (193)
++...||.||-|.|.|-..|.+.|=+.
T Consensus 57 k~tD~VLEvGPGTGnLT~~lLe~~kkV 83 (315)
T KOG0820|consen 57 KPTDVVLEVGPGTGNLTVKLLEAGKKV 83 (315)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCeE
Confidence 456789999999999999999988654
No 171
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=41.46 E-value=20 Score=32.76 Aligned_cols=13 Identities=46% Similarity=0.539 Sum_probs=8.9
Q ss_pred CCceeEeeccChH
Q 029423 165 SWSVLDIGTGNGL 177 (193)
Q Consensus 165 ~~sILDLGCGNG~ 177 (193)
..++||||||-+-
T Consensus 103 ~v~glDIGTGAsc 115 (299)
T PF05971_consen 103 KVRGLDIGTGASC 115 (299)
T ss_dssp --EEEEES-TTTT
T ss_pred ceEeecCCccHHH
Confidence 5789999999884
No 172
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=40.73 E-value=26 Score=30.88 Aligned_cols=34 Identities=18% Similarity=0.290 Sum_probs=21.1
Q ss_pred chHHHHHHHHHhhhhhhccCcccccccccCCCccccccccCCCCceeEeeccCh
Q 029423 123 DVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNG 176 (193)
Q Consensus 123 d~~d~vv~Wlk~~~~~i~q~~ip~~~d~~~~e~~e~~~k~~~~~sILDLGCGNG 176 (193)
++...+++|+++...... ......++|||||=+.
T Consensus 30 dSSK~lv~wL~~~~~~~~--------------------~~~~~lrlLEVGals~ 63 (219)
T PF11968_consen 30 DSSKWLVEWLKELGVRPK--------------------NGRPKLRLLEVGALST 63 (219)
T ss_pred chhHHHHHHhhhhccccc--------------------cccccceEEeecccCC
Confidence 445789999987531100 0023479999998543
No 173
>PLN02476 O-methyltransferase
Probab=38.86 E-value=25 Score=31.63 Aligned_cols=20 Identities=10% Similarity=0.167 Sum_probs=17.9
Q ss_pred CCceeEeeccChHhHHHHHH
Q 029423 165 SWSVLDIGTGNGLLLQELSK 184 (193)
Q Consensus 165 ~~sILDLGCGNG~LL~eLak 184 (193)
..+||+||||.|.....|++
T Consensus 119 ak~VLEIGT~tGySal~lA~ 138 (278)
T PLN02476 119 AERCIEVGVYTGYSSLAVAL 138 (278)
T ss_pred CCeEEEecCCCCHHHHHHHH
Confidence 45799999999999999987
No 174
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=38.63 E-value=28 Score=33.08 Aligned_cols=43 Identities=30% Similarity=0.383 Sum_probs=30.2
Q ss_pred HHHHHHHHHhhhhhhccCcccccccccCCCccccccccCCCCceeEeeccChHhHHHHHHCCCc
Q 029423 125 MDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGYT 188 (193)
Q Consensus 125 ~d~vv~Wlk~~~~~i~q~~ip~~~d~~~~e~~e~~~k~~~~~sILDLGCGNG~LL~eLak~GFs 188 (193)
+..+-+|||..++. ... .+...+|+||||-|-=|..--+.|-.
T Consensus 99 lRnfNNwIKs~LI~---~y~------------------~~~~~~~~LgCGKGGDLlKw~kAgI~ 141 (389)
T KOG1975|consen 99 LRNFNNWIKSVLIN---LYT------------------KRGDDVLDLGCGKGGDLLKWDKAGIG 141 (389)
T ss_pred hhhhhHHHHHHHHH---HHh------------------ccccccceeccCCcccHhHhhhhccc
Confidence 67788999986532 222 22456999999999877777677654
No 175
>PLN02823 spermine synthase
Probab=38.32 E-value=26 Score=32.08 Aligned_cols=20 Identities=25% Similarity=0.431 Sum_probs=18.0
Q ss_pred CceeEeeccChHhHHHHHHC
Q 029423 166 WSVLDIGTGNGLLLQELSKQ 185 (193)
Q Consensus 166 ~sILDLGCGNG~LL~eLak~ 185 (193)
.+||.||+|.|.++.++.+.
T Consensus 105 k~VLiiGgG~G~~~re~l~~ 124 (336)
T PLN02823 105 KTVFIMGGGEGSTAREVLRH 124 (336)
T ss_pred CEEEEECCCchHHHHHHHhC
Confidence 47999999999999998874
No 176
>PRK07877 hypothetical protein; Provisional
Probab=37.84 E-value=36 Score=34.60 Aligned_cols=24 Identities=17% Similarity=0.308 Sum_probs=19.0
Q ss_pred CCCceeEeeccChH-hHHHHHHCCC
Q 029423 164 SSWSVLDIGTGNGL-LLQELSKQGY 187 (193)
Q Consensus 164 ~~~sILDLGCGNG~-LL~eLak~GF 187 (193)
.+.+||-+|||-|. .+..|+..|-
T Consensus 106 ~~~~V~IvG~GlGs~~a~~LaraGv 130 (722)
T PRK07877 106 GRLRIGVVGLSVGHAIAHTLAAEGL 130 (722)
T ss_pred hcCCEEEEEecHHHHHHHHHHHccC
Confidence 35689999999877 5667788885
No 177
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=36.81 E-value=27 Score=32.11 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=19.3
Q ss_pred CCCceeEeeccChHhHHHHHHC
Q 029423 164 SSWSVLDIGTGNGLLLQELSKQ 185 (193)
Q Consensus 164 ~~~sILDLGCGNG~LL~eLak~ 185 (193)
...+|||++||+|-+-|.+.+.
T Consensus 100 ~~m~~lDvaGGTGDiaFril~~ 121 (296)
T KOG1540|consen 100 KGMKVLDVAGGTGDIAFRILRH 121 (296)
T ss_pred CCCeEEEecCCcchhHHHHHHh
Confidence 4589999999999999998875
No 178
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=35.86 E-value=23 Score=35.27 Aligned_cols=20 Identities=35% Similarity=0.371 Sum_probs=17.9
Q ss_pred CCceeEeeccChHhHHHHHH
Q 029423 165 SWSVLDIGTGNGLLLQELSK 184 (193)
Q Consensus 165 ~~sILDLGCGNG~LL~eLak 184 (193)
+..++|.+||.|.|+.+.+.
T Consensus 191 ~~~l~DP~CGSGTilIEAa~ 210 (702)
T PRK11783 191 GTPLLDPMCGSGTLLIEAAM 210 (702)
T ss_pred CCeEEccCCCccHHHHHHHH
Confidence 46799999999999999876
No 179
>PF11278 DUF3079: Protein of unknown function (DUF3079); InterPro: IPR021430 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=35.53 E-value=12 Score=26.20 Aligned_cols=11 Identities=27% Similarity=0.447 Sum_probs=8.7
Q ss_pred ceeEeeccChH
Q 029423 167 SVLDIGTGNGL 177 (193)
Q Consensus 167 sILDLGCGNG~ 177 (193)
+.=++.||||.
T Consensus 24 ~a~~l~CGNGs 34 (52)
T PF11278_consen 24 PADSLACGNGS 34 (52)
T ss_pred ChhhhcccCCc
Confidence 45589999985
No 180
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=35.53 E-value=30 Score=29.39 Aligned_cols=20 Identities=35% Similarity=0.307 Sum_probs=17.8
Q ss_pred CceeEeeccChHhHHHHHHC
Q 029423 166 WSVLDIGTGNGLLLQELSKQ 185 (193)
Q Consensus 166 ~sILDLGCGNG~LL~eLak~ 185 (193)
.+||.|||+.|.-...|++.
T Consensus 47 k~vLEIGt~~GySal~la~~ 66 (205)
T PF01596_consen 47 KRVLEIGTFTGYSALWLAEA 66 (205)
T ss_dssp SEEEEESTTTSHHHHHHHHT
T ss_pred ceEEEeccccccHHHHHHHh
Confidence 47999999999999999864
No 181
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=34.62 E-value=31 Score=30.73 Aligned_cols=13 Identities=38% Similarity=0.708 Sum_probs=8.4
Q ss_pred CCceeEeeccChH
Q 029423 165 SWSVLDIGTGNGL 177 (193)
Q Consensus 165 ~~sILDLGCGNG~ 177 (193)
..++||||||--.
T Consensus 57 g~~llDiGsGPti 69 (256)
T PF01234_consen 57 GETLLDIGSGPTI 69 (256)
T ss_dssp EEEEEEES-TT--
T ss_pred CCEEEEeCCCcHH
Confidence 4579999999743
No 182
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=34.49 E-value=34 Score=31.23 Aligned_cols=22 Identities=32% Similarity=0.530 Sum_probs=16.5
Q ss_pred CCceeEeeccChH----hHHHHHHCC
Q 029423 165 SWSVLDIGTGNGL----LLQELSKQG 186 (193)
Q Consensus 165 ~~sILDLGCGNG~----LL~eLak~G 186 (193)
...|+++|||||. ||.+|.+.+
T Consensus 77 ~~~lIELGsG~~~Kt~~LL~aL~~~~ 102 (319)
T TIGR03439 77 GSMLVELGSGNLRKVGILLEALERQK 102 (319)
T ss_pred CCEEEEECCCchHHHHHHHHHHHhcC
Confidence 4579999999986 566776544
No 183
>KOG3790 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.64 E-value=16 Score=35.69 Aligned_cols=22 Identities=45% Similarity=0.721 Sum_probs=15.1
Q ss_pred CceeEeeccChHhHHHHHHCCC
Q 029423 166 WSVLDIGTGNGLLLQELSKQGY 187 (193)
Q Consensus 166 ~sILDLGCGNG~LL~eLak~GF 187 (193)
-..-|+|||||++-.-|-..|+
T Consensus 213 ~~f~d~gcgngllvhllna~gl 234 (529)
T KOG3790|consen 213 NKFVDIGCGNGLLVHLLNAIGL 234 (529)
T ss_pred cchhccccCchhHHHHHHHHHH
Confidence 4578999999965555544444
No 184
>PRK10742 putative methyltransferase; Provisional
Probab=33.24 E-value=35 Score=30.52 Aligned_cols=26 Identities=27% Similarity=0.259 Sum_probs=23.1
Q ss_pred CceeEeeccChHhHHHHHHCCCcccc
Q 029423 166 WSVLDIGTGNGLLLQELSKQGYTLRF 191 (193)
Q Consensus 166 ~sILDLGCGNG~LL~eLak~GFs~~l 191 (193)
.+|||+=+|.|...+.|+-.|....+
T Consensus 90 p~VLD~TAGlG~Da~~las~G~~V~~ 115 (250)
T PRK10742 90 PDVVDATAGLGRDAFVLASVGCRVRM 115 (250)
T ss_pred CEEEECCCCccHHHHHHHHcCCEEEE
Confidence 48999999999999999999987543
No 185
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=32.04 E-value=22 Score=31.92 Aligned_cols=14 Identities=36% Similarity=0.605 Sum_probs=11.4
Q ss_pred CCceeEeeccChHh
Q 029423 165 SWSVLDIGTGNGLL 178 (193)
Q Consensus 165 ~~sILDLGCGNG~L 178 (193)
...||.||||.|.-
T Consensus 77 K~~vLEvgcGtG~N 90 (252)
T KOG4300|consen 77 KGDVLEVGCGTGAN 90 (252)
T ss_pred ccceEEecccCCCC
Confidence 35689999999964
No 186
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=31.09 E-value=43 Score=28.69 Aligned_cols=25 Identities=32% Similarity=0.333 Sum_probs=22.0
Q ss_pred CCCceeEeeccChHhHHHHHHCCCc
Q 029423 164 SSWSVLDIGTGNGLLLQELSKQGYT 188 (193)
Q Consensus 164 ~~~sILDLGCGNG~LL~eLak~GFs 188 (193)
.+.++|||=+|+|.|+++-.-+|-.
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA~ 67 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGAA 67 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCCc
Confidence 3679999999999999999888864
No 187
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=29.68 E-value=41 Score=30.50 Aligned_cols=20 Identities=35% Similarity=0.657 Sum_probs=16.7
Q ss_pred CCceeEeeccChHhHHHHHH
Q 029423 165 SWSVLDIGTGNGLLLQELSK 184 (193)
Q Consensus 165 ~~sILDLGCGNG~LL~eLak 184 (193)
..++||||-|+|.....|+.
T Consensus 95 ~~~lLDlGAGdG~VT~~l~~ 114 (265)
T PF05219_consen 95 DKSLLDLGAGDGEVTERLAP 114 (265)
T ss_pred CCceEEecCCCcHHHHHHHh
Confidence 46799999999998877754
No 188
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=29.61 E-value=37 Score=30.08 Aligned_cols=23 Identities=35% Similarity=0.615 Sum_probs=20.1
Q ss_pred CCceeEeeccChHhHHHHHHCCC
Q 029423 165 SWSVLDIGTGNGLLLQELSKQGY 187 (193)
Q Consensus 165 ~~sILDLGCGNG~LL~eLak~GF 187 (193)
..+|||+|+|.|+-...-++.|-
T Consensus 80 gkrVLd~gagsgLvaIAaa~aGA 102 (218)
T COG3897 80 GKRVLDLGAGSGLVAIAAARAGA 102 (218)
T ss_pred cceeeecccccChHHHHHHHhhh
Confidence 45899999999999999888874
No 189
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=29.55 E-value=37 Score=31.57 Aligned_cols=20 Identities=10% Similarity=0.190 Sum_probs=19.0
Q ss_pred CceeEeeccChHhHHHHHHC
Q 029423 166 WSVLDIGTGNGLLLQELSKQ 185 (193)
Q Consensus 166 ~sILDLGCGNG~LL~eLak~ 185 (193)
.+|||+.||.|.++.+++++
T Consensus 46 ~~vLD~faGsG~rgir~a~e 65 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHE 65 (374)
T ss_pred CEEEECCCchhHHHHHHHhh
Confidence 58999999999999999998
No 190
>PRK14851 hypothetical protein; Provisional
Probab=28.64 E-value=50 Score=33.27 Aligned_cols=24 Identities=25% Similarity=0.320 Sum_probs=19.6
Q ss_pred CCCceeEeecc-Ch-HhHHHHHHCCC
Q 029423 164 SSWSVLDIGTG-NG-LLLQELSKQGY 187 (193)
Q Consensus 164 ~~~sILDLGCG-NG-~LL~eLak~GF 187 (193)
.+.+|+-+||| -| ..+..|+..|+
T Consensus 42 ~~~~VlIvG~GGlGs~va~~Lar~GV 67 (679)
T PRK14851 42 AEAKVAIPGMGGVGGVHLITMVRTGI 67 (679)
T ss_pred hcCeEEEECcCHHHHHHHHHHHHhCC
Confidence 35689999999 44 47888999998
No 191
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=28.07 E-value=29 Score=31.36 Aligned_cols=19 Identities=26% Similarity=0.627 Sum_probs=14.8
Q ss_pred CCCceeEeeccChHhHHHH
Q 029423 164 SSWSVLDIGTGNGLLLQEL 182 (193)
Q Consensus 164 ~~~sILDLGCGNG~LL~eL 182 (193)
...++||||.|||.....|
T Consensus 112 ~~~~lLDlGAGdGeit~~m 130 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRM 130 (288)
T ss_pred CCeeEEeccCCCcchhhhh
Confidence 3468999999999766544
No 192
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=27.27 E-value=39 Score=28.80 Aligned_cols=20 Identities=30% Similarity=0.303 Sum_probs=17.0
Q ss_pred CCceeEeeccChHhHHHHHH
Q 029423 165 SWSVLDIGTGNGLLLQELSK 184 (193)
Q Consensus 165 ~~sILDLGCGNG~LL~eLak 184 (193)
+..|||+.||-|.|...+++
T Consensus 102 ~e~VlD~faGIG~f~l~~ak 121 (200)
T PF02475_consen 102 GEVVLDMFAGIGPFSLPIAK 121 (200)
T ss_dssp T-EEEETT-TTTTTHHHHHH
T ss_pred ceEEEEccCCccHHHHHHhh
Confidence 55899999999999999998
No 193
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=25.51 E-value=41 Score=30.36 Aligned_cols=9 Identities=44% Similarity=0.870 Sum_probs=5.8
Q ss_pred ceeEeeccC
Q 029423 167 SVLDIGTGN 175 (193)
Q Consensus 167 sILDLGCGN 175 (193)
.+||||||-
T Consensus 71 QFLDlGsGl 79 (267)
T PF04672_consen 71 QFLDLGSGL 79 (267)
T ss_dssp EEEEET--S
T ss_pred eEEEcccCC
Confidence 499999993
No 194
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.86 E-value=1.3e+02 Score=26.94 Aligned_cols=29 Identities=17% Similarity=0.310 Sum_probs=19.6
Q ss_pred CCCceeEeeccC--hH-hHHHHHHCCCccccc
Q 029423 164 SSWSVLDIGTGN--GL-LLQELSKQGYTLRFC 192 (193)
Q Consensus 164 ~~~sILDLGCGN--G~-LL~eLak~GFs~~l~ 192 (193)
...+|+-||+|+ |. +.+.|.+.|.+..+|
T Consensus 158 ~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~ 189 (283)
T PRK14192 158 AGKHAVVVGRSAILGKPMAMMLLNANATVTIC 189 (283)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhCCCEEEEE
Confidence 356899999998 44 445556778765544
No 195
>KOG3790 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.52 E-value=53 Score=32.33 Aligned_cols=22 Identities=18% Similarity=0.114 Sum_probs=17.3
Q ss_pred CCCceeEeeccChHhHHHHHHC
Q 029423 164 SSWSVLDIGTGNGLLLQELSKQ 185 (193)
Q Consensus 164 ~~~sILDLGCGNG~LL~eLak~ 185 (193)
...+.-|||||||.|---|.-+
T Consensus 318 ~~~~frdvscyngff~y~llve 339 (529)
T KOG3790|consen 318 HLGPFRDVSCYNGFFEYTLLVE 339 (529)
T ss_pred hccccceeccccchhHhhhhhh
Confidence 3567889999999987776654
Done!