Query 029425
Match_columns 193
No_of_seqs 110 out of 1640
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 12:42:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029425.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029425hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1064 AdhP Zn-dependent alco 100.0 6.8E-45 1.5E-49 286.5 19.1 187 1-192 4-218 (339)
2 COG0604 Qor NADPH:quinone redu 100.0 4E-43 8.7E-48 280.6 22.3 193 1-193 1-196 (326)
3 KOG0023 Alcohol dehydrogenase, 100.0 3.2E-38 6.9E-43 242.7 17.4 188 2-192 11-234 (360)
4 KOG0024 Sorbitol dehydrogenase 100.0 1.8E-37 4E-42 239.0 16.8 185 1-191 5-221 (354)
5 KOG1197 Predicted quinone oxid 100.0 1.3E-36 2.9E-41 227.0 18.4 191 2-193 10-200 (336)
6 cd08281 liver_ADH_like1 Zinc-d 100.0 6.2E-36 1.3E-40 243.8 22.4 189 1-192 1-244 (371)
7 PLN02740 Alcohol dehydrogenase 100.0 1.1E-35 2.3E-40 243.2 22.0 189 1-192 11-251 (381)
8 TIGR02818 adh_III_F_hyde S-(hy 100.0 1.8E-35 3.8E-40 240.9 22.9 188 1-192 2-238 (368)
9 cd08239 THR_DH_like L-threonin 100.0 1.9E-35 4.1E-40 238.1 21.8 187 1-192 1-216 (339)
10 COG1062 AdhC Zn-dependent alco 100.0 8.5E-36 1.8E-40 231.5 17.6 188 1-193 3-239 (366)
11 TIGR03451 mycoS_dep_FDH mycoth 100.0 6.8E-35 1.5E-39 236.6 21.8 187 1-192 2-229 (358)
12 cd08301 alcohol_DH_plants Plan 100.0 1.5E-34 3.2E-39 235.5 22.8 188 1-192 3-240 (369)
13 cd08300 alcohol_DH_class_III c 100.0 1.8E-34 3.8E-39 235.0 22.5 188 1-192 3-239 (368)
14 TIGR02822 adh_fam_2 zinc-bindi 100.0 1.7E-34 3.6E-39 231.9 21.2 187 3-192 1-217 (329)
15 cd08291 ETR_like_1 2-enoyl thi 100.0 5.2E-34 1.1E-38 228.5 21.8 190 1-192 1-196 (324)
16 PLN02586 probable cinnamyl alc 100.0 6.6E-34 1.4E-38 231.0 22.1 190 1-192 11-236 (360)
17 cd08277 liver_alcohol_DH_like 100.0 9.5E-34 2.1E-38 230.5 22.5 187 1-192 3-237 (365)
18 cd08292 ETR_like_2 2-enoyl thi 100.0 1.9E-33 4.2E-38 224.5 22.8 191 1-192 1-192 (324)
19 PLN02827 Alcohol dehydrogenase 100.0 1.9E-33 4.1E-38 229.7 22.7 185 1-192 13-246 (378)
20 PRK09880 L-idonate 5-dehydroge 100.0 2.5E-33 5.4E-38 226.3 21.6 183 1-192 5-222 (343)
21 KOG0025 Zn2+-binding dehydroge 100.0 3.6E-33 7.8E-38 211.9 18.9 189 2-190 21-215 (354)
22 PLN02178 cinnamyl-alcohol dehy 100.0 1.3E-32 2.7E-37 224.6 21.9 189 2-192 6-231 (375)
23 TIGR02817 adh_fam_1 zinc-bindi 100.0 9.6E-33 2.1E-37 221.7 20.8 190 2-192 1-202 (336)
24 KOG0022 Alcohol dehydrogenase, 100.0 3.5E-33 7.5E-38 214.3 16.7 189 1-193 8-246 (375)
25 cd08230 glucose_DH Glucose deh 100.0 1.5E-32 3.3E-37 222.6 20.9 185 1-192 1-226 (355)
26 TIGR02819 fdhA_non_GSH formald 100.0 2.7E-32 5.8E-37 223.8 21.9 182 1-189 3-235 (393)
27 cd08296 CAD_like Cinnamyl alco 100.0 7.1E-32 1.5E-36 216.9 22.8 187 1-192 1-215 (333)
28 cd08290 ETR 2-enoyl thioester 100.0 4.5E-32 9.8E-37 218.3 21.4 192 1-192 1-203 (341)
29 PTZ00354 alcohol dehydrogenase 100.0 1.3E-31 2.9E-36 214.5 23.2 192 1-192 2-193 (334)
30 PLN02514 cinnamyl-alcohol dehy 100.0 8.4E-32 1.8E-36 218.5 22.2 188 1-192 10-233 (357)
31 cd08295 double_bond_reductase_ 100.0 6.6E-32 1.4E-36 217.5 21.3 178 12-192 18-205 (338)
32 cd08231 MDR_TM0436_like Hypoth 100.0 1.6E-31 3.5E-36 216.9 23.1 187 2-192 2-230 (361)
33 cd08293 PTGR2 Prostaglandin re 100.0 1.1E-31 2.3E-36 216.6 21.7 179 12-192 20-209 (345)
34 cd08299 alcohol_DH_class_I_II_ 100.0 1.4E-31 3E-36 218.4 22.5 187 1-192 8-243 (373)
35 cd05280 MDR_yhdh_yhfp Yhdh and 100.0 2.4E-31 5.2E-36 212.4 23.3 190 1-192 1-199 (325)
36 TIGR03201 dearomat_had 6-hydro 100.0 7.6E-32 1.6E-36 218.1 20.4 184 4-192 2-218 (349)
37 cd08294 leukotriene_B4_DH_like 100.0 2.4E-31 5.3E-36 212.9 22.6 182 1-192 3-196 (329)
38 cd08233 butanediol_DH_like (2R 100.0 1.8E-31 3.8E-36 216.0 22.0 186 1-192 1-225 (351)
39 cd08237 ribitol-5-phosphate_DH 100.0 1E-31 2.2E-36 216.8 19.9 179 2-188 4-213 (341)
40 cd08297 CAD3 Cinnamyl alcohol 100.0 3.5E-31 7.5E-36 213.3 23.0 190 1-192 1-218 (341)
41 cd05284 arabinose_DH_like D-ar 100.0 2.3E-31 4.9E-36 214.2 21.7 189 1-192 1-220 (340)
42 PRK10309 galactitol-1-phosphat 100.0 2.4E-31 5.1E-36 215.0 21.5 184 1-192 1-213 (347)
43 cd08278 benzyl_alcohol_DH Benz 100.0 6.3E-31 1.4E-35 213.9 22.8 187 1-192 3-239 (365)
44 cd08250 Mgc45594_like Mgc45594 100.0 8.9E-31 1.9E-35 209.8 23.1 189 1-192 2-192 (329)
45 TIGR02825 B4_12hDH leukotriene 100.0 5.5E-31 1.2E-35 211.0 21.9 181 2-192 2-191 (325)
46 PRK10754 quinone oxidoreductas 100.0 5.4E-31 1.2E-35 210.9 21.8 191 1-192 2-193 (327)
47 cd08289 MDR_yhfp_like Yhfp put 100.0 7.1E-31 1.5E-35 210.0 22.1 190 1-192 1-199 (326)
48 cd08288 MDR_yhdh Yhdh putative 100.0 1.1E-30 2.4E-35 208.7 23.1 190 1-192 1-199 (324)
49 PRK10083 putative oxidoreducta 100.0 7.7E-31 1.7E-35 211.1 22.2 185 1-192 1-214 (339)
50 cd08244 MDR_enoyl_red Possible 100.0 1.9E-30 4.1E-35 207.1 24.0 191 1-192 1-195 (324)
51 cd08246 crotonyl_coA_red croto 100.0 1.2E-30 2.5E-35 214.2 22.2 192 1-192 13-246 (393)
52 cd08285 NADP_ADH NADP(H)-depen 100.0 1.8E-30 3.8E-35 210.1 22.7 186 1-192 1-219 (351)
53 PLN03154 putative allyl alcoho 100.0 3.2E-30 6.8E-35 208.6 24.0 187 2-192 10-212 (348)
54 PRK09422 ethanol-active dehydr 100.0 1.5E-30 3.3E-35 209.2 22.0 186 1-192 1-215 (338)
55 cd08260 Zn_ADH6 Alcohol dehydr 100.0 2.3E-30 5E-35 208.9 23.0 188 1-192 1-217 (345)
56 TIGR02823 oxido_YhdH putative 100.0 2.3E-30 5E-35 206.9 22.7 189 2-192 1-198 (323)
57 cd08270 MDR4 Medium chain dehy 100.0 2.8E-30 6E-35 204.7 22.9 183 1-190 1-183 (305)
58 cd08274 MDR9 Medium chain dehy 100.0 2.4E-30 5.2E-35 208.9 22.7 189 1-191 1-228 (350)
59 cd08249 enoyl_reductase_like e 100.0 9.7E-31 2.1E-35 210.8 20.1 188 1-192 1-206 (339)
60 cd05276 p53_inducible_oxidored 100.0 3.3E-30 7.1E-35 204.5 22.7 192 1-192 1-192 (323)
61 cd08240 6_hydroxyhexanoate_dh_ 100.0 3.1E-30 6.8E-35 208.5 21.7 189 1-192 1-228 (350)
62 cd08253 zeta_crystallin Zeta-c 100.0 5.7E-30 1.2E-34 203.5 22.7 192 1-192 1-197 (325)
63 cd08261 Zn_ADH7 Alcohol dehydr 100.0 6E-30 1.3E-34 205.9 22.9 184 1-192 1-211 (337)
64 TIGR01202 bchC 2-desacetyl-2-h 100.0 1.7E-30 3.7E-35 207.0 19.3 173 1-182 2-187 (308)
65 cd08252 AL_MDR Arginate lyase 100.0 6.5E-30 1.4E-34 205.2 22.4 191 1-192 1-203 (336)
66 cd08259 Zn_ADH5 Alcohol dehydr 100.0 8.6E-30 1.9E-34 203.9 22.9 188 1-192 1-215 (332)
67 TIGR01751 crot-CoA-red crotony 100.0 6.6E-30 1.4E-34 210.2 22.7 192 1-192 8-242 (398)
68 cd08243 quinone_oxidoreductase 100.0 8.9E-30 1.9E-34 202.5 22.6 187 1-190 1-193 (320)
69 cd05278 FDH_like Formaldehyde 100.0 5.4E-30 1.2E-34 206.6 21.6 186 1-192 1-220 (347)
70 cd08238 sorbose_phosphate_red 100.0 4.7E-30 1E-34 211.8 21.6 189 1-192 3-240 (410)
71 cd08276 MDR7 Medium chain dehy 100.0 1.5E-29 3.2E-34 202.6 23.7 191 1-192 1-212 (336)
72 cd08298 CAD2 Cinnamyl alcohol 100.0 1.3E-29 2.8E-34 203.1 23.2 189 1-192 1-219 (329)
73 cd08263 Zn_ADH10 Alcohol dehyd 100.0 8.8E-30 1.9E-34 207.3 22.4 187 1-192 1-240 (367)
74 cd08279 Zn_ADH_class_III Class 100.0 9.4E-30 2E-34 206.9 22.4 187 1-192 1-235 (363)
75 cd08283 FDH_like_1 Glutathione 100.0 1E-29 2.2E-34 208.3 22.7 186 1-192 1-237 (386)
76 cd05279 Zn_ADH1 Liver alcohol 100.0 7.4E-30 1.6E-34 207.7 21.7 186 2-192 2-236 (365)
77 cd05282 ETR_like 2-enoyl thioe 100.0 8.3E-30 1.8E-34 203.3 21.5 188 5-192 2-191 (323)
78 cd08286 FDH_like_ADH2 formalde 100.0 1.4E-29 3.1E-34 204.2 22.5 187 1-192 1-219 (345)
79 cd08254 hydroxyacyl_CoA_DH 6-h 100.0 1.4E-29 3.1E-34 203.2 22.0 190 1-192 1-217 (338)
80 cd08235 iditol_2_DH_like L-idi 100.0 2.3E-29 5E-34 202.7 22.9 185 1-192 1-218 (343)
81 cd08262 Zn_ADH8 Alcohol dehydr 100.0 1.7E-29 3.6E-34 203.5 21.5 185 1-192 1-214 (341)
82 cd08248 RTN4I1 Human Reticulon 100.0 1.9E-29 4.1E-34 203.6 21.7 191 1-192 1-214 (350)
83 PRK13771 putative alcohol dehy 100.0 1.5E-29 3.2E-34 203.2 20.8 186 1-191 1-213 (334)
84 KOG1198 Zinc-binding oxidoredu 100.0 1.5E-29 3.2E-34 203.0 20.1 190 4-193 9-211 (347)
85 cd08236 sugar_DH NAD(P)-depend 100.0 3.3E-29 7.1E-34 201.9 22.1 184 1-192 1-212 (343)
86 cd08273 MDR8 Medium chain dehy 100.0 5.4E-29 1.2E-33 199.4 23.1 185 2-187 2-186 (331)
87 cd08272 MDR6 Medium chain dehy 100.0 5.2E-29 1.1E-33 198.3 22.6 191 1-192 1-196 (326)
88 COG1063 Tdh Threonine dehydrog 100.0 2.1E-29 4.6E-34 203.7 19.9 185 1-191 1-221 (350)
89 cd08256 Zn_ADH2 Alcohol dehydr 100.0 8E-29 1.7E-33 200.4 23.2 186 1-192 1-227 (350)
90 cd08264 Zn_ADH_like2 Alcohol d 100.0 5.7E-29 1.2E-33 199.1 21.4 184 1-192 1-211 (325)
91 cd05283 CAD1 Cinnamyl alcohol 100.0 9.4E-29 2E-33 199.1 21.9 186 2-192 1-221 (337)
92 cd08266 Zn_ADH_like1 Alcohol d 100.0 1.7E-28 3.6E-33 196.6 23.2 192 1-192 1-219 (342)
93 cd08282 PFDH_like Pseudomonas 100.0 1.3E-28 2.9E-33 201.0 22.8 184 1-192 1-228 (375)
94 TIGR02824 quinone_pig3 putativ 100.0 2.2E-28 4.8E-33 194.5 22.8 192 1-192 1-192 (325)
95 cd08242 MDR_like Medium chain 100.0 1.3E-28 2.7E-33 196.7 21.5 179 1-192 1-207 (319)
96 cd08234 threonine_DH_like L-th 100.0 1.4E-28 3.1E-33 197.3 21.8 184 1-192 1-212 (334)
97 cd08268 MDR2 Medium chain dehy 100.0 2.7E-28 5.9E-33 194.2 22.7 192 1-192 1-197 (328)
98 cd08284 FDH_like_2 Glutathione 100.0 2.2E-28 4.7E-33 197.1 22.3 183 1-191 1-218 (344)
99 PRK05396 tdh L-threonine 3-deh 100.0 2E-28 4.3E-33 197.4 21.5 186 1-192 1-216 (341)
100 cd08247 AST1_like AST1 is a cy 100.0 3.2E-28 7E-33 196.9 22.6 191 1-192 1-205 (352)
101 cd08258 Zn_ADH4 Alcohol dehydr 100.0 3.1E-28 6.7E-33 193.8 22.0 187 1-192 1-217 (306)
102 cd08271 MDR5 Medium chain dehy 100.0 7.4E-28 1.6E-32 191.9 23.4 190 1-192 1-193 (325)
103 cd05286 QOR2 Quinone oxidoredu 100.0 8.3E-28 1.8E-32 190.5 22.9 189 2-192 1-189 (320)
104 cd08245 CAD Cinnamyl alcohol d 100.0 4E-28 8.6E-33 194.6 20.9 186 2-192 1-214 (330)
105 cd08287 FDH_like_ADH3 formalde 100.0 8.5E-28 1.8E-32 193.8 21.8 185 1-192 1-221 (345)
106 cd08265 Zn_ADH3 Alcohol dehydr 100.0 1.1E-27 2.4E-32 196.2 21.9 176 15-192 39-256 (384)
107 cd05289 MDR_like_2 alcohol deh 100.0 1.6E-27 3.5E-32 188.3 21.8 191 1-192 1-196 (309)
108 cd05285 sorbitol_DH Sorbitol d 100.0 2E-27 4.3E-32 191.7 20.8 184 3-192 1-215 (343)
109 cd08232 idonate-5-DH L-idonate 100.0 2.9E-27 6.2E-32 190.3 21.5 182 5-192 2-218 (339)
110 cd08241 QOR1 Quinone oxidoredu 100.0 7.1E-27 1.5E-31 185.5 22.9 191 1-192 1-192 (323)
111 cd08267 MDR1 Medium chain dehy 100.0 4.6E-27 1E-31 186.9 21.2 186 6-192 3-195 (319)
112 COG2130 Putative NADP-dependen 100.0 3E-27 6.5E-32 181.1 18.4 177 12-193 24-205 (340)
113 cd08251 polyketide_synthase po 100.0 7.9E-27 1.7E-31 184.0 20.6 170 22-192 2-173 (303)
114 cd05288 PGDH Prostaglandin deh 100.0 1.5E-26 3.2E-31 185.2 22.2 186 2-192 3-199 (329)
115 cd05281 TDH Threonine dehydrog 100.0 1.1E-26 2.3E-31 187.4 21.3 186 1-192 1-216 (341)
116 cd08275 MDR3 Medium chain dehy 100.0 3.2E-26 6.9E-31 183.3 22.0 190 2-192 1-191 (337)
117 cd08269 Zn_ADH9 Alcohol dehydr 100.0 2.4E-26 5.2E-31 182.6 20.6 175 13-192 5-182 (312)
118 TIGR00692 tdh L-threonine 3-de 100.0 1.8E-26 3.9E-31 186.0 20.1 180 7-192 5-214 (340)
119 PLN02702 L-idonate 5-dehydroge 100.0 4.8E-26 1E-30 185.2 21.8 175 14-191 28-233 (364)
120 cd05188 MDR Medium chain reduc 99.9 2.8E-26 6.1E-31 178.2 18.8 163 29-192 1-186 (271)
121 cd05195 enoyl_red enoyl reduct 99.9 2.1E-24 4.5E-29 168.7 18.9 161 28-192 1-163 (293)
122 smart00829 PKS_ER Enoylreducta 99.9 5.6E-24 1.2E-28 166.2 18.3 156 32-192 2-159 (288)
123 TIGR03366 HpnZ_proposed putati 99.9 2.4E-24 5.2E-29 169.4 15.1 131 60-192 1-173 (280)
124 KOG1196 Predicted NAD-dependen 99.9 2.8E-22 6.1E-27 153.5 20.1 186 3-193 6-208 (343)
125 cd08255 2-desacetyl-2-hydroxye 99.8 3.5E-20 7.7E-25 145.1 14.6 129 57-191 20-150 (277)
126 KOG1202 Animal-type fatty acid 99.8 4.4E-19 9.5E-24 154.9 9.6 163 10-182 1424-1595(2376)
127 PF08240 ADH_N: Alcohol dehydr 99.8 2.7E-18 5.9E-23 116.7 8.2 82 27-108 1-109 (109)
128 PRK09424 pntA NAD(P) transhydr 98.2 5E-06 1.1E-10 70.4 7.6 54 137-191 162-216 (509)
129 PF11017 DUF2855: Protein of u 98.0 0.00017 3.6E-09 57.4 12.0 138 48-193 20-191 (314)
130 cd00401 AdoHcyase S-adenosyl-L 97.7 0.00016 3.5E-09 59.8 8.1 61 126-187 187-248 (413)
131 TIGR00561 pntA NAD(P) transhyd 97.4 0.00047 1E-08 58.5 6.8 49 138-187 162-210 (511)
132 PRK08306 dipicolinate synthase 97.4 0.0014 3.1E-08 52.1 8.8 47 139-186 151-197 (296)
133 PRK05476 S-adenosyl-L-homocyst 97.3 0.0019 4.2E-08 53.7 8.7 61 124-185 195-256 (425)
134 PRK12771 putative glutamate sy 96.9 0.0024 5.1E-08 55.4 6.6 55 136-191 133-208 (564)
135 TIGR00936 ahcY adenosylhomocys 96.9 0.0048 1E-07 51.1 7.9 60 125-185 179-239 (406)
136 PRK06949 short chain dehydroge 96.7 0.0052 1.1E-07 47.3 6.2 43 138-180 7-49 (258)
137 PF01488 Shikimate_DH: Shikima 96.7 0.006 1.3E-07 42.7 5.7 43 139-182 11-54 (135)
138 PLN02494 adenosylhomocysteinas 96.6 0.011 2.3E-07 49.8 7.8 57 128-185 241-298 (477)
139 PRK07814 short chain dehydroge 96.6 0.0062 1.3E-07 47.3 6.2 42 139-180 9-50 (263)
140 PRK07060 short chain dehydroge 96.6 0.0083 1.8E-07 45.8 6.8 47 139-185 8-55 (245)
141 PRK08339 short chain dehydroge 96.6 0.0063 1.4E-07 47.3 6.1 43 139-181 7-49 (263)
142 PRK05872 short chain dehydroge 96.6 0.0064 1.4E-07 48.2 6.2 46 139-184 8-54 (296)
143 PRK08324 short chain dehydroge 96.6 0.0047 1E-07 54.7 5.9 79 92-181 385-463 (681)
144 PRK06057 short chain dehydroge 96.6 0.0068 1.5E-07 46.8 6.2 47 139-185 6-53 (255)
145 PRK06139 short chain dehydroge 96.5 0.0069 1.5E-07 48.9 6.0 48 139-186 6-57 (330)
146 PRK05867 short chain dehydroge 96.5 0.008 1.7E-07 46.3 6.0 42 139-180 8-49 (253)
147 PRK07062 short chain dehydroge 96.5 0.0082 1.8E-07 46.5 6.1 42 139-180 7-48 (265)
148 PRK12828 short chain dehydroge 96.5 0.0088 1.9E-07 45.3 6.0 39 139-177 6-44 (239)
149 PRK08213 gluconate 5-dehydroge 96.5 0.0088 1.9E-07 46.2 6.1 43 139-181 11-53 (259)
150 PRK05866 short chain dehydroge 96.5 0.0089 1.9E-07 47.4 6.2 42 139-180 39-80 (293)
151 PLN02780 ketoreductase/ oxidor 96.4 0.0076 1.6E-07 48.5 5.8 42 139-180 52-93 (320)
152 PRK07576 short chain dehydroge 96.4 0.0093 2E-07 46.4 6.2 41 139-179 8-48 (264)
153 PRK12829 short chain dehydroge 96.4 0.009 1.9E-07 46.1 6.1 44 138-181 9-52 (264)
154 PRK05854 short chain dehydroge 96.4 0.0093 2E-07 47.7 6.2 42 139-180 13-54 (313)
155 PRK07523 gluconate 5-dehydroge 96.4 0.0096 2.1E-07 45.8 6.1 41 139-179 9-49 (255)
156 PF01262 AlaDh_PNT_C: Alanine 96.4 0.01 2.2E-07 43.2 5.8 46 140-186 20-65 (168)
157 PLN03209 translocon at the inn 96.4 0.0098 2.1E-07 51.3 6.5 48 133-180 73-120 (576)
158 PRK07035 short chain dehydroge 96.4 0.01 2.2E-07 45.6 6.2 41 140-180 8-48 (252)
159 PRK13394 3-hydroxybutyrate deh 96.4 0.01 2.3E-07 45.7 6.2 40 139-178 6-45 (262)
160 PRK06196 oxidoreductase; Provi 96.3 0.011 2.4E-07 47.3 6.2 42 139-180 25-66 (315)
161 PRK07063 short chain dehydroge 96.3 0.012 2.6E-07 45.5 6.1 42 139-180 6-47 (260)
162 COG0031 CysK Cysteine synthase 96.3 0.026 5.7E-07 44.7 8.0 57 133-190 55-114 (300)
163 PRK06172 short chain dehydroge 96.3 0.012 2.6E-07 45.2 6.1 40 139-178 6-45 (253)
164 TIGR02853 spore_dpaA dipicolin 96.3 0.027 5.8E-07 44.7 8.0 46 139-185 150-195 (287)
165 PRK08945 putative oxoacyl-(acy 96.3 0.013 2.7E-07 45.0 5.9 43 137-179 9-51 (247)
166 KOG1252 Cystathionine beta-syn 96.3 0.03 6.5E-07 44.8 8.0 57 133-189 96-155 (362)
167 cd05213 NAD_bind_Glutamyl_tRNA 96.3 0.02 4.4E-07 45.9 7.3 80 105-186 141-225 (311)
168 KOG1205 Predicted dehydrogenas 96.3 0.0093 2E-07 47.0 5.1 42 139-180 11-52 (282)
169 PRK07831 short chain dehydroge 96.3 0.015 3.1E-07 45.1 6.3 44 137-180 14-58 (262)
170 PRK07109 short chain dehydroge 96.2 0.013 2.9E-07 47.3 6.2 42 139-180 7-48 (334)
171 PRK06841 short chain dehydroge 96.2 0.014 3.1E-07 44.8 6.1 44 139-182 14-57 (255)
172 cd01078 NAD_bind_H4MPT_DH NADP 96.2 0.051 1.1E-06 40.3 8.9 42 139-180 27-68 (194)
173 PRK06125 short chain dehydroge 96.2 0.015 3.1E-07 45.0 6.1 42 139-180 6-47 (259)
174 PRK08628 short chain dehydroge 96.2 0.012 2.5E-07 45.4 5.6 41 139-179 6-46 (258)
175 TIGR00518 alaDH alanine dehydr 96.2 0.021 4.5E-07 47.0 7.1 45 140-185 167-212 (370)
176 PRK12939 short chain dehydroge 96.2 0.016 3.5E-07 44.2 6.2 42 139-180 6-47 (250)
177 PRK06197 short chain dehydroge 96.2 0.014 3.1E-07 46.4 5.9 40 139-178 15-54 (306)
178 PRK07904 short chain dehydroge 96.2 0.019 4.2E-07 44.4 6.5 40 137-176 5-45 (253)
179 PRK06124 gluconate 5-dehydroge 96.2 0.017 3.7E-07 44.5 6.2 41 139-179 10-50 (256)
180 PRK08085 gluconate 5-dehydroge 96.1 0.017 3.6E-07 44.5 6.0 41 139-179 8-48 (254)
181 PRK00045 hemA glutamyl-tRNA re 96.1 0.024 5.1E-07 47.5 7.3 117 59-185 90-228 (423)
182 PRK05875 short chain dehydroge 96.1 0.018 4E-07 44.8 6.1 41 139-179 6-46 (276)
183 PTZ00075 Adenosylhomocysteinas 96.1 0.059 1.3E-06 45.6 9.2 59 126-185 239-298 (476)
184 PRK09242 tropinone reductase; 96.0 0.02 4.4E-07 44.1 6.1 42 139-180 8-49 (257)
185 PRK06935 2-deoxy-D-gluconate 3 96.0 0.022 4.9E-07 43.9 6.2 35 139-173 14-48 (258)
186 PRK03369 murD UDP-N-acetylmura 96.0 0.024 5.1E-07 48.4 6.8 50 137-187 9-58 (488)
187 PLN02565 cysteine synthase 96.0 0.06 1.3E-06 43.4 8.8 57 133-189 59-118 (322)
188 PRK04148 hypothetical protein; 96.0 0.038 8.3E-07 38.6 6.6 50 138-189 15-64 (134)
189 PRK07666 fabG 3-ketoacyl-(acyl 96.0 0.024 5.2E-07 43.1 6.2 41 139-179 6-46 (239)
190 PF02826 2-Hacid_dh_C: D-isome 96.0 0.026 5.6E-07 41.4 6.1 45 139-184 35-79 (178)
191 PRK08277 D-mannonate oxidoredu 96.0 0.023 5E-07 44.4 6.1 41 139-179 9-49 (278)
192 PRK05717 oxidoreductase; Valid 95.9 0.023 5.1E-07 43.7 6.0 41 139-179 9-49 (255)
193 PLN03013 cysteine synthase 95.8 0.065 1.4E-06 44.8 8.5 57 133-189 167-226 (429)
194 KOG0725 Reductases with broad 95.8 0.028 6E-07 44.2 6.0 43 139-181 7-49 (270)
195 PLN02253 xanthoxin dehydrogena 95.8 0.028 6.1E-07 43.9 6.2 41 139-179 17-57 (280)
196 PRK08261 fabG 3-ketoacyl-(acyl 95.8 0.012 2.6E-07 49.5 4.2 59 133-191 27-90 (450)
197 PLN02778 3,5-epimerase/4-reduc 95.8 0.043 9.4E-07 43.6 7.2 53 139-191 8-64 (298)
198 cd01075 NAD_bind_Leu_Phe_Val_D 95.8 0.094 2E-06 39.3 8.6 46 139-185 27-73 (200)
199 PRK12823 benD 1,6-dihydroxycyc 95.8 0.027 5.8E-07 43.4 5.9 37 139-175 7-43 (260)
200 PRK12367 short chain dehydroge 95.8 0.042 9.1E-07 42.4 6.9 36 139-174 13-48 (245)
201 PRK06113 7-alpha-hydroxysteroi 95.8 0.032 6.9E-07 43.0 6.1 42 139-180 10-51 (255)
202 PRK06114 short chain dehydroge 95.7 0.06 1.3E-06 41.4 7.3 37 139-175 7-43 (254)
203 PLN02556 cysteine synthase/L-3 95.6 0.092 2E-06 43.2 8.5 57 133-189 103-162 (368)
204 PRK07097 gluconate 5-dehydroge 95.6 0.039 8.5E-07 42.8 6.1 42 139-180 9-50 (265)
205 PRK00517 prmA ribosomal protei 95.6 0.08 1.7E-06 41.0 7.7 92 79-182 67-160 (250)
206 PRK07775 short chain dehydroge 95.6 0.042 9.1E-07 42.9 6.2 40 139-178 9-48 (274)
207 PLN00141 Tic62-NAD(P)-related 95.5 0.038 8.3E-07 42.6 5.8 40 140-179 17-56 (251)
208 PRK06523 short chain dehydroge 95.5 0.031 6.8E-07 43.1 5.3 36 139-174 8-43 (260)
209 KOG1208 Dehydrogenases with di 95.5 0.039 8.6E-07 44.3 5.9 43 139-181 34-76 (314)
210 PRK12481 2-deoxy-D-gluconate 3 95.5 0.06 1.3E-06 41.5 6.8 36 139-174 7-42 (251)
211 PLN02686 cinnamoyl-CoA reducta 95.5 0.04 8.7E-07 45.1 6.0 44 138-181 51-94 (367)
212 PRK07533 enoyl-(acyl carrier p 95.4 0.046 1E-06 42.3 5.9 38 139-176 9-48 (258)
213 PRK07424 bifunctional sterol d 95.4 0.048 1E-06 45.4 6.1 40 139-178 177-216 (406)
214 PRK06079 enoyl-(acyl carrier p 95.3 0.05 1.1E-06 42.0 5.9 44 139-182 6-51 (252)
215 PRK06505 enoyl-(acyl carrier p 95.3 0.045 9.8E-07 42.8 5.6 37 139-175 6-44 (271)
216 PRK08303 short chain dehydroge 95.3 0.055 1.2E-06 43.2 6.2 35 139-173 7-41 (305)
217 TIGR01035 hemA glutamyl-tRNA r 95.3 0.13 2.9E-06 42.9 8.6 116 59-185 88-226 (417)
218 COG0169 AroE Shikimate 5-dehyd 95.3 0.12 2.6E-06 40.9 7.7 43 138-181 124-167 (283)
219 PLN02896 cinnamyl-alcohol dehy 95.2 0.059 1.3E-06 43.7 6.3 43 136-178 6-48 (353)
220 PRK06484 short chain dehydroge 95.2 0.051 1.1E-06 46.5 6.2 47 139-185 268-315 (520)
221 PRK06603 enoyl-(acyl carrier p 95.1 0.058 1.3E-06 41.8 5.7 36 139-174 7-44 (260)
222 PRK06720 hypothetical protein; 95.1 0.084 1.8E-06 38.4 6.2 40 139-178 15-54 (169)
223 cd01080 NAD_bind_m-THF_DH_Cycl 95.1 0.3 6.6E-06 35.6 9.0 68 121-190 25-93 (168)
224 PLN02730 enoyl-[acyl-carrier-p 95.1 0.061 1.3E-06 43.0 5.8 39 139-178 8-48 (303)
225 PRK08416 7-alpha-hydroxysteroi 95.1 0.067 1.5E-06 41.4 5.9 39 139-177 7-46 (260)
226 PRK00258 aroE shikimate 5-dehy 95.0 0.16 3.5E-06 40.0 7.9 43 138-181 121-164 (278)
227 PRK06463 fabG 3-ketoacyl-(acyl 95.0 0.1 2.2E-06 40.2 6.6 44 139-182 6-50 (255)
228 PRK12549 shikimate 5-dehydroge 95.0 0.16 3.5E-06 40.2 7.8 42 139-181 126-168 (284)
229 TIGR00507 aroE shikimate 5-deh 95.0 0.17 3.6E-06 39.7 7.9 44 136-180 113-156 (270)
230 PRK15181 Vi polysaccharide bio 94.9 0.069 1.5E-06 43.3 5.8 48 126-174 2-49 (348)
231 PRK06171 sorbitol-6-phosphate 94.9 0.066 1.4E-06 41.5 5.4 38 139-176 8-45 (266)
232 PLN00011 cysteine synthase 94.9 0.24 5.2E-06 40.0 8.7 57 133-189 61-120 (323)
233 TIGR01318 gltD_gamma_fam gluta 94.9 0.1 2.3E-06 44.2 6.9 52 139-191 140-212 (467)
234 PLN02427 UDP-apiose/xylose syn 94.8 0.075 1.6E-06 43.7 5.9 44 136-179 10-54 (386)
235 PRK12550 shikimate 5-dehydroge 94.8 0.2 4.3E-06 39.4 7.9 44 136-180 118-162 (272)
236 PRK08936 glucose-1-dehydrogena 94.8 0.1 2.2E-06 40.3 6.1 36 139-174 6-41 (261)
237 PF02254 TrkA_N: TrkA-N domain 94.7 0.17 3.6E-06 34.0 6.4 43 143-186 1-43 (116)
238 PRK08159 enoyl-(acyl carrier p 94.7 0.086 1.9E-06 41.3 5.7 36 139-174 9-46 (272)
239 PRK08594 enoyl-(acyl carrier p 94.7 0.085 1.8E-06 40.9 5.5 35 139-173 6-42 (257)
240 TIGR01139 cysK cysteine syntha 94.7 0.34 7.3E-06 38.5 9.1 56 133-189 50-108 (298)
241 COG2230 Cfa Cyclopropane fatty 94.6 0.41 8.9E-06 37.8 9.1 55 126-182 59-113 (283)
242 PRK07201 short chain dehydroge 94.5 0.098 2.1E-06 46.1 6.2 41 140-180 371-411 (657)
243 PRK06128 oxidoreductase; Provi 94.5 0.12 2.6E-06 40.9 6.1 36 139-174 54-89 (300)
244 PF02353 CMAS: Mycolic acid cy 94.5 0.081 1.8E-06 41.7 5.0 50 130-181 53-102 (273)
245 PRK11761 cysM cysteine synthas 94.5 0.34 7.5E-06 38.6 8.6 57 133-190 56-115 (296)
246 TIGR02632 RhaD_aldol-ADH rhamn 94.5 0.1 2.2E-06 46.4 6.2 42 139-180 413-454 (676)
247 PRK06701 short chain dehydroge 94.5 0.13 2.9E-06 40.6 6.2 37 139-175 45-81 (290)
248 PRK14192 bifunctional 5,10-met 94.4 0.48 1E-05 37.6 9.1 53 138-191 157-209 (283)
249 PRK05855 short chain dehydroge 94.3 0.12 2.6E-06 44.5 6.2 42 139-180 314-355 (582)
250 KOG1014 17 beta-hydroxysteroid 94.3 0.13 2.7E-06 40.9 5.6 44 138-181 47-90 (312)
251 PRK09134 short chain dehydroge 94.2 0.16 3.5E-06 39.1 6.2 35 139-173 8-42 (258)
252 PLN02214 cinnamoyl-CoA reducta 94.2 0.11 2.5E-06 42.0 5.5 38 139-176 9-46 (342)
253 PRK07985 oxidoreductase; Provi 94.2 0.14 3E-06 40.6 5.9 35 139-173 48-82 (294)
254 TIGR01138 cysM cysteine syntha 94.2 0.46 1E-05 37.7 8.8 56 133-189 52-110 (290)
255 PF07991 IlvN: Acetohydroxy ac 94.2 0.24 5.1E-06 35.8 6.4 46 139-185 3-49 (165)
256 PRK12809 putative oxidoreducta 94.2 0.18 3.8E-06 44.6 6.9 52 139-191 309-381 (639)
257 TIGR01809 Shik-DH-AROM shikima 94.1 0.15 3.3E-06 40.3 5.9 41 139-180 124-165 (282)
258 PRK12769 putative oxidoreducta 94.1 0.16 3.5E-06 45.0 6.6 35 139-174 326-360 (654)
259 PRK07792 fabG 3-ketoacyl-(acyl 94.1 0.26 5.6E-06 39.3 7.3 35 139-173 11-45 (306)
260 PRK14027 quinate/shikimate deh 94.1 0.34 7.4E-06 38.4 7.8 42 139-181 126-168 (283)
261 PF00670 AdoHcyase_NAD: S-aden 94.0 0.26 5.6E-06 35.6 6.4 49 137-186 20-68 (162)
262 PLN02657 3,8-divinyl protochlo 94.0 0.14 3E-06 42.4 5.7 42 135-176 55-96 (390)
263 PLN00198 anthocyanidin reducta 94.0 0.15 3.3E-06 41.0 5.8 37 140-176 9-45 (338)
264 PRK12548 shikimate 5-dehydroge 94.0 0.35 7.6E-06 38.4 7.8 35 139-174 125-160 (289)
265 PF13823 ADH_N_assoc: Alcohol 94.0 0.065 1.4E-06 25.4 2.2 22 1-25 1-22 (23)
266 PRK08261 fabG 3-ketoacyl-(acyl 94.0 0.17 3.7E-06 42.6 6.2 35 139-173 209-243 (450)
267 PRK08993 2-deoxy-D-gluconate 3 93.9 0.19 4.1E-06 38.6 6.1 35 139-173 9-43 (253)
268 PRK07889 enoyl-(acyl carrier p 93.9 0.18 4E-06 38.9 5.9 36 139-174 6-43 (256)
269 KOG1210 Predicted 3-ketosphing 93.8 0.29 6.3E-06 39.1 6.8 47 136-182 29-75 (331)
270 PRK08220 2,3-dihydroxybenzoate 93.8 0.16 3.4E-06 38.9 5.4 36 139-174 7-42 (252)
271 TIGR02035 D_Ser_am_lyase D-ser 93.8 0.31 6.6E-06 41.0 7.3 48 142-189 153-203 (431)
272 PRK11873 arsM arsenite S-adeno 93.7 0.2 4.3E-06 39.2 5.8 47 134-182 72-120 (272)
273 PRK10717 cysteine synthase A; 93.7 0.58 1.3E-05 37.8 8.7 56 133-189 57-115 (330)
274 KOG1207 Diacetyl reductase/L-x 93.6 0.2 4.2E-06 36.8 5.1 45 139-183 6-50 (245)
275 cd06447 D-Ser-dehyd D-Serine d 93.6 0.36 7.9E-06 40.2 7.4 48 142-189 135-185 (404)
276 PRK01438 murD UDP-N-acetylmura 93.5 0.37 8E-06 41.0 7.6 50 139-189 15-69 (480)
277 cd01065 NAD_bind_Shikimate_DH 93.5 0.69 1.5E-05 32.6 7.9 46 138-184 17-64 (155)
278 PF03807 F420_oxidored: NADP o 93.5 0.43 9.3E-06 30.8 6.3 45 142-187 1-50 (96)
279 TIGR01136 cysKM cysteine synth 93.4 0.86 1.9E-05 36.3 9.1 56 133-189 51-109 (299)
280 PRK10669 putative cation:proto 93.4 0.24 5.1E-06 43.0 6.3 47 141-188 418-464 (558)
281 PRK11705 cyclopropane fatty ac 93.4 0.29 6.4E-06 40.5 6.5 58 124-183 152-209 (383)
282 PF02882 THF_DHG_CYH_C: Tetrah 93.3 1.1 2.4E-05 32.4 8.6 70 119-189 15-84 (160)
283 KOG1209 1-Acyl dihydroxyaceton 93.3 0.28 6.1E-06 37.2 5.6 47 139-185 6-54 (289)
284 KOG1610 Corticosteroid 11-beta 93.2 0.37 8E-06 38.5 6.5 45 138-182 27-71 (322)
285 PF02670 DXP_reductoisom: 1-de 93.2 0.43 9.2E-06 33.2 6.1 49 143-191 1-54 (129)
286 PRK06381 threonine synthase; V 93.1 0.36 7.9E-06 38.8 6.6 51 140-190 62-115 (319)
287 PRK12749 quinate/shikimate deh 93.1 0.66 1.4E-05 36.8 8.0 35 139-174 123-158 (288)
288 PLN02695 GDP-D-mannose-3',5'-e 93.1 0.23 4.9E-06 40.8 5.4 36 138-173 19-54 (370)
289 PRK03562 glutathione-regulated 93.1 0.29 6.3E-06 43.1 6.4 48 140-188 400-447 (621)
290 KOG1201 Hydroxysteroid 17-beta 93.1 0.31 6.6E-06 38.6 5.8 46 139-184 37-86 (300)
291 PRK12744 short chain dehydroge 93.1 0.25 5.5E-06 38.0 5.5 34 139-172 7-40 (257)
292 TIGR01137 cysta_beta cystathio 93.1 0.82 1.8E-05 38.6 8.9 56 133-189 55-113 (454)
293 PLN02206 UDP-glucuronate decar 93.0 0.22 4.8E-06 42.0 5.4 35 138-172 117-151 (442)
294 PRK08125 bifunctional UDP-gluc 93.0 0.32 6.9E-06 43.2 6.7 39 137-175 312-351 (660)
295 PRK06110 hypothetical protein; 93.0 0.57 1.2E-05 37.8 7.6 47 143-189 72-121 (322)
296 PLN02166 dTDP-glucose 4,6-dehy 92.9 0.25 5.5E-06 41.5 5.6 36 138-173 118-153 (436)
297 PLN02970 serine racemase 92.8 0.58 1.3E-05 37.8 7.3 46 144-189 78-126 (328)
298 cd01561 CBS_like CBS_like: Thi 92.8 1.1 2.4E-05 35.5 8.8 53 136-189 49-104 (291)
299 PRK07048 serine/threonine dehy 92.7 0.58 1.2E-05 37.7 7.2 46 144-189 75-123 (321)
300 PLN02356 phosphateglycerate ki 92.7 0.92 2E-05 38.0 8.4 55 134-189 98-155 (423)
301 PRK06608 threonine dehydratase 92.6 0.66 1.4E-05 37.7 7.5 47 143-189 74-123 (338)
302 PF00070 Pyr_redox: Pyridine n 92.6 0.44 9.6E-06 29.8 5.2 33 142-175 1-33 (80)
303 PLN02572 UDP-sulfoquinovose sy 92.6 0.25 5.4E-06 41.7 5.1 33 139-171 46-78 (442)
304 PRK14982 acyl-ACP reductase; P 92.6 0.35 7.5E-06 39.3 5.7 43 139-181 154-198 (340)
305 cd01562 Thr-dehyd Threonine de 92.6 0.67 1.5E-05 36.8 7.4 49 140-189 65-116 (304)
306 PRK06719 precorrin-2 dehydroge 92.4 0.46 9.9E-06 34.2 5.6 42 139-183 12-53 (157)
307 PLN02520 bifunctional 3-dehydr 92.3 0.36 7.8E-06 41.7 5.8 42 139-181 378-419 (529)
308 PRK02991 D-serine dehydratase; 92.1 0.78 1.7E-05 38.7 7.5 48 142-189 158-208 (441)
309 PRK03659 glutathione-regulated 92.1 0.47 1E-05 41.7 6.4 48 140-188 400-447 (601)
310 cd00640 Trp-synth-beta_II Tryp 92.0 0.64 1.4E-05 35.7 6.5 48 142-189 51-101 (244)
311 PF13241 NAD_binding_7: Putati 92.0 0.27 5.9E-06 32.6 3.8 35 139-174 6-40 (103)
312 TIGR02964 xanthine_xdhC xanthi 92.0 0.49 1.1E-05 36.7 5.7 39 136-175 96-134 (246)
313 PRK08198 threonine dehydratase 92.0 0.98 2.1E-05 37.6 7.9 49 140-189 70-121 (404)
314 PTZ00079 NADP-specific glutama 91.9 1 2.2E-05 38.0 7.8 36 138-174 235-270 (454)
315 COG1086 Predicted nucleoside-d 91.9 0.47 1E-05 40.9 5.9 42 139-180 249-291 (588)
316 PRK13403 ketol-acid reductoiso 91.8 0.57 1.2E-05 37.8 6.0 46 139-185 15-60 (335)
317 COG0334 GdhA Glutamate dehydro 91.8 1.1 2.5E-05 37.1 7.8 59 114-175 182-241 (411)
318 PRK01390 murD UDP-N-acetylmura 91.7 0.48 1.1E-05 40.0 5.9 45 140-185 9-53 (460)
319 PRK14175 bifunctional 5,10-met 91.7 1.6 3.6E-05 34.6 8.4 70 120-190 138-207 (286)
320 PRK09310 aroDE bifunctional 3- 91.6 1.1 2.5E-05 38.2 8.0 41 139-180 331-371 (477)
321 PLN03139 formate dehydrogenase 91.5 0.56 1.2E-05 38.8 5.9 46 139-185 198-243 (386)
322 PF02254 TrkA_N: TrkA-N domain 91.5 0.76 1.6E-05 30.7 5.7 59 133-191 56-116 (116)
323 KOG1203 Predicted dehydrogenas 91.3 0.52 1.1E-05 39.2 5.4 44 137-180 76-119 (411)
324 PF12847 Methyltransf_18: Meth 91.3 0.65 1.4E-05 30.7 5.1 42 139-182 1-43 (112)
325 PRK07574 formate dehydrogenase 91.2 0.62 1.4E-05 38.6 5.9 36 139-175 191-226 (385)
326 PF01113 DapB_N: Dihydrodipico 91.2 0.87 1.9E-05 31.2 5.8 32 142-173 2-34 (124)
327 PRK08813 threonine dehydratase 91.1 1.5 3.3E-05 35.8 8.0 46 144-189 84-132 (349)
328 PF13478 XdhC_C: XdhC Rossmann 91.1 0.35 7.6E-06 33.9 3.8 34 143-177 1-34 (136)
329 PRK08638 threonine dehydratase 91.1 1.3 2.9E-05 35.9 7.6 47 143-189 77-126 (333)
330 PRK13940 glutamyl-tRNA reducta 91.0 1.3 2.9E-05 37.0 7.7 45 139-184 180-226 (414)
331 cd05311 NAD_bind_2_malic_enz N 91.0 1.7 3.7E-05 33.2 7.8 44 129-173 14-60 (226)
332 PRK08246 threonine dehydratase 91.0 1.6 3.4E-05 35.1 7.8 50 139-189 67-119 (310)
333 cd06448 L-Ser-dehyd Serine deh 90.9 1.1 2.3E-05 36.1 6.8 50 139-189 50-102 (316)
334 PRK13656 trans-2-enoyl-CoA red 90.9 1.1 2.4E-05 37.1 6.9 34 138-172 39-74 (398)
335 PRK14031 glutamate dehydrogena 90.8 1.3 2.9E-05 37.3 7.5 33 139-172 227-259 (444)
336 cd05313 NAD_bind_2_Glu_DH NAD( 90.7 1.7 3.7E-05 33.9 7.5 34 138-172 36-69 (254)
337 PRK07476 eutB threonine dehydr 90.5 1.5 3.2E-05 35.4 7.4 46 144-189 70-118 (322)
338 cd05211 NAD_bind_Glu_Leu_Phe_V 90.5 2.8 6E-05 31.9 8.4 35 139-174 22-56 (217)
339 PLN02928 oxidoreductase family 90.4 0.63 1.4E-05 38.0 5.2 34 139-173 158-191 (347)
340 TIGR01747 diampropi_NH3ly diam 90.4 0.95 2.1E-05 37.4 6.3 50 140-189 93-145 (376)
341 PRK13984 putative oxidoreducta 90.4 0.97 2.1E-05 39.7 6.7 53 137-190 280-353 (604)
342 PRK12814 putative NADPH-depend 90.4 1.1 2.3E-05 39.9 6.9 37 138-175 191-227 (652)
343 PRK13243 glyoxylate reductase; 90.4 0.91 2E-05 36.8 6.0 37 139-176 149-185 (333)
344 COG1052 LdhA Lactate dehydroge 90.3 0.87 1.9E-05 36.8 5.8 36 139-175 145-180 (324)
345 TIGR01127 ilvA_1Cterm threonin 90.3 1.9 4.2E-05 35.5 8.0 47 143-189 50-99 (380)
346 PLN02260 probable rhamnose bio 90.3 0.96 2.1E-05 40.2 6.6 53 139-191 379-435 (668)
347 PRK06721 threonine synthase; R 90.2 1.3 2.8E-05 36.2 6.9 50 140-189 74-127 (352)
348 TIGR01470 cysG_Nterm siroheme 90.1 2 4.4E-05 32.3 7.4 35 139-174 8-42 (205)
349 PRK00141 murD UDP-N-acetylmura 90.1 1.2 2.6E-05 37.9 6.9 47 140-187 15-62 (473)
350 PRK14189 bifunctional 5,10-met 90.1 3.3 7.1E-05 32.9 8.7 56 120-175 138-193 (285)
351 KOG2304 3-hydroxyacyl-CoA dehy 90.1 0.61 1.3E-05 35.7 4.4 45 136-181 7-51 (298)
352 PRK14188 bifunctional 5,10-met 89.9 4 8.6E-05 32.6 9.2 68 120-189 138-206 (296)
353 TIGR02991 ectoine_eutB ectoine 89.8 1.9 4.2E-05 34.7 7.4 46 144-189 70-118 (317)
354 PLN00016 RNA-binding protein; 89.8 0.58 1.3E-05 38.4 4.5 37 140-176 52-92 (378)
355 PRK07409 threonine synthase; V 89.7 1.9 4.2E-05 35.2 7.5 48 142-189 79-130 (353)
356 cd01563 Thr-synth_1 Threonine 89.7 1.2 2.5E-05 35.9 6.1 49 140-189 70-121 (324)
357 PRK00377 cbiT cobalt-precorrin 89.7 1.3 2.8E-05 32.9 6.0 47 133-181 34-82 (198)
358 PRK01710 murD UDP-N-acetylmura 89.6 1.4 3.1E-05 37.3 6.9 47 140-187 14-65 (458)
359 PRK06300 enoyl-(acyl carrier p 89.6 1.1 2.5E-05 35.7 5.9 34 139-172 7-42 (299)
360 PRK14030 glutamate dehydrogena 89.6 2 4.3E-05 36.3 7.5 31 139-170 227-257 (445)
361 cd05212 NAD_bind_m-THF_DH_Cycl 89.6 4.5 9.7E-05 28.5 8.3 38 138-175 26-63 (140)
362 TIGR01316 gltA glutamate synth 89.4 1.6 3.5E-05 36.9 7.0 51 138-189 270-328 (449)
363 PRK08197 threonine synthase; V 89.3 1.5 3.2E-05 36.5 6.6 50 140-189 126-178 (394)
364 COG0111 SerA Phosphoglycerate 89.1 0.89 1.9E-05 36.8 5.1 32 140-172 142-173 (324)
365 PRK05638 threonine synthase; V 89.1 1.4 3.1E-05 37.1 6.5 50 140-189 111-163 (442)
366 PRK14194 bifunctional 5,10-met 89.1 4.9 0.00011 32.2 9.1 56 120-175 139-194 (301)
367 PRK05579 bifunctional phosphop 89.0 0.92 2E-05 37.8 5.2 36 139-174 187-238 (399)
368 PRK12810 gltD glutamate syntha 89.0 1.7 3.8E-05 36.9 7.0 35 138-173 141-175 (471)
369 PRK12831 putative oxidoreducta 89.0 1.8 3.9E-05 36.8 7.0 50 137-187 278-335 (464)
370 TIGR01317 GOGAT_sm_gam glutama 88.9 1.6 3.5E-05 37.3 6.8 35 138-173 141-175 (485)
371 PRK08329 threonine synthase; V 88.9 1.6 3.4E-05 35.7 6.4 48 142-189 105-155 (347)
372 PF12242 Eno-Rase_NADH_b: NAD( 88.9 2.1 4.5E-05 26.8 5.4 37 135-171 34-71 (78)
373 PRK08410 2-hydroxyacid dehydro 88.8 0.93 2E-05 36.4 5.0 35 139-174 144-178 (311)
374 PRK06718 precorrin-2 dehydroge 88.8 1.2 2.5E-05 33.5 5.2 35 139-174 9-43 (202)
375 PLN00203 glutamyl-tRNA reducta 88.5 1.2 2.7E-05 38.3 5.7 42 140-182 266-308 (519)
376 PRK06815 hypothetical protein; 88.4 1.6 3.5E-05 35.1 6.1 46 144-189 71-119 (317)
377 PRK07591 threonine synthase; V 88.4 1.5 3.2E-05 36.8 6.1 48 142-189 138-188 (421)
378 PRK06352 threonine synthase; V 88.3 2 4.4E-05 35.1 6.7 48 142-189 76-127 (351)
379 TIGR03528 2_3_DAP_am_ly diamin 88.2 1.9 4.1E-05 35.9 6.5 47 143-189 115-164 (396)
380 PRK09224 threonine dehydratase 88.2 2.4 5.2E-05 36.5 7.3 47 143-189 70-119 (504)
381 PLN02569 threonine synthase 88.1 4.5 9.7E-05 34.7 8.8 47 142-188 188-238 (484)
382 TIGR00260 thrC threonine synth 88.0 1.5 3.3E-05 35.3 5.8 50 140-189 70-123 (328)
383 COG0373 HemA Glutamyl-tRNA red 88.0 3.8 8.3E-05 34.3 8.1 46 139-185 177-224 (414)
384 PRK06436 glycerate dehydrogena 88.0 1.2 2.6E-05 35.7 5.1 34 139-173 121-154 (303)
385 PRK09496 trkA potassium transp 88.0 2 4.3E-05 36.1 6.7 44 139-183 230-273 (453)
386 PRK06382 threonine dehydratase 87.9 3 6.5E-05 34.8 7.6 47 144-190 76-125 (406)
387 PRK06487 glycerate dehydrogena 87.9 1.1 2.4E-05 36.1 4.9 34 139-173 147-180 (317)
388 PRK06932 glycerate dehydrogena 87.7 1.2 2.6E-05 35.9 4.9 34 139-173 146-179 (314)
389 PF13450 NAD_binding_8: NAD(P) 87.7 1.6 3.5E-05 26.5 4.4 30 145-175 1-30 (68)
390 PLN02256 arogenate dehydrogena 87.6 2.9 6.2E-05 33.5 7.0 51 133-185 29-79 (304)
391 PRK06450 threonine synthase; V 87.6 1.9 4.2E-05 35.0 6.2 49 141-189 97-148 (338)
392 PRK12480 D-lactate dehydrogena 87.5 1.5 3.2E-05 35.6 5.4 37 139-176 145-181 (330)
393 COG0569 TrkA K+ transport syst 87.4 4.7 0.0001 30.8 7.8 59 133-191 60-120 (225)
394 PRK05479 ketol-acid reductoiso 87.4 2.1 4.5E-05 34.7 6.1 46 139-185 16-62 (330)
395 PRK15469 ghrA bifunctional gly 87.4 1.5 3.3E-05 35.2 5.4 36 139-175 135-170 (312)
396 PLN02477 glutamate dehydrogena 87.3 3.4 7.4E-05 34.6 7.5 34 139-173 205-238 (410)
397 PRK11199 tyrA bifunctional cho 87.1 4.9 0.00011 33.2 8.3 36 139-174 97-132 (374)
398 PF00291 PALP: Pyridoxal-phosp 87.0 1.8 3.9E-05 34.2 5.6 50 139-189 55-107 (306)
399 PRK08639 threonine dehydratase 86.8 3.2 6.8E-05 34.9 7.2 44 143-186 75-121 (420)
400 KOG1200 Mitochondrial/plastidi 86.8 1.9 4.1E-05 32.4 5.1 46 140-185 14-60 (256)
401 PRK10792 bifunctional 5,10-met 86.8 8.1 0.00018 30.7 9.0 69 120-190 139-208 (285)
402 COG2518 Pcm Protein-L-isoaspar 86.8 3.3 7.1E-05 31.3 6.5 52 132-186 65-120 (209)
403 TIGR00406 prmA ribosomal prote 86.8 5.8 0.00012 31.4 8.3 43 137-182 157-200 (288)
404 PF00056 Ldh_1_N: lactate/mala 86.7 2.5 5.4E-05 29.7 5.6 36 142-177 2-39 (141)
405 PRK07334 threonine dehydratase 86.7 3.1 6.6E-05 34.7 7.0 46 144-189 74-122 (403)
406 PRK08206 diaminopropionate amm 86.6 2.6 5.7E-05 35.1 6.5 47 143-189 118-167 (399)
407 COG0686 Ald Alanine dehydrogen 86.5 2.5 5.4E-05 34.0 5.9 159 26-186 29-214 (371)
408 PLN02503 fatty acyl-CoA reduct 86.4 1.5 3.3E-05 38.6 5.2 39 137-175 116-157 (605)
409 PRK06260 threonine synthase; V 86.3 2.4 5.3E-05 35.2 6.2 49 141-189 115-167 (397)
410 PRK08526 threonine dehydratase 86.3 4.1 8.8E-05 34.0 7.5 46 144-189 71-119 (403)
411 PF10727 Rossmann-like: Rossma 86.3 0.89 1.9E-05 31.5 3.1 51 140-191 10-62 (127)
412 PRK14172 bifunctional 5,10-met 86.3 8.5 0.00018 30.5 8.8 57 120-177 138-195 (278)
413 TIGR01124 ilvA_2Cterm threonin 86.2 3.6 7.7E-05 35.4 7.2 46 144-189 68-116 (499)
414 cd06449 ACCD Aminocyclopropane 86.1 2.9 6.4E-05 33.3 6.4 50 140-189 51-113 (307)
415 cd06446 Trp-synth_B Tryptophan 86.1 2.6 5.7E-05 34.6 6.2 48 142-189 84-137 (365)
416 PRK09414 glutamate dehydrogena 86.0 4.3 9.3E-05 34.4 7.5 34 138-172 230-263 (445)
417 PRK11749 dihydropyrimidine deh 86.0 3.7 7.9E-05 34.7 7.2 53 137-190 270-331 (457)
418 TIGR00263 trpB tryptophan synt 85.8 4.2 9E-05 33.7 7.3 49 141-189 99-153 (385)
419 TIGR02469 CbiT precorrin-6Y C5 85.6 3.9 8.5E-05 27.2 6.0 47 133-181 13-60 (124)
420 PF13580 SIS_2: SIS domain; PD 85.5 2.7 5.8E-05 29.4 5.2 39 133-171 97-137 (138)
421 PRK14173 bifunctional 5,10-met 85.5 9.2 0.0002 30.4 8.7 57 120-177 135-192 (287)
422 PRK04690 murD UDP-N-acetylmura 85.4 3.4 7.4E-05 35.1 6.8 33 140-173 8-40 (468)
423 PRK11790 D-3-phosphoglycerate 85.3 2 4.4E-05 35.9 5.3 35 139-174 150-184 (409)
424 TIGR02079 THD1 threonine dehyd 85.2 4.3 9.2E-05 34.0 7.1 43 144-186 67-112 (409)
425 PLN02996 fatty acyl-CoA reduct 85.1 1.7 3.7E-05 37.2 4.8 38 138-175 9-49 (491)
426 PRK15438 erythronate-4-phospha 85.0 2.2 4.7E-05 35.3 5.2 34 139-173 115-148 (378)
427 PRK13581 D-3-phosphoglycerate 84.8 3.1 6.8E-05 36.0 6.3 35 139-174 139-173 (526)
428 PRK14191 bifunctional 5,10-met 84.8 9.8 0.00021 30.2 8.5 54 120-174 137-191 (285)
429 PRK00257 erythronate-4-phospha 84.7 4.1 8.8E-05 33.8 6.7 35 138-173 114-148 (381)
430 KOG1199 Short-chain alcohol de 84.6 4.4 9.5E-05 29.8 6.0 54 138-191 7-61 (260)
431 PRK14179 bifunctional 5,10-met 84.4 8.3 0.00018 30.6 8.0 52 120-171 138-189 (284)
432 PRK14182 bifunctional 5,10-met 84.4 12 0.00025 29.8 8.8 69 120-189 137-205 (282)
433 PRK14176 bifunctional 5,10-met 84.3 12 0.00027 29.7 8.9 69 120-190 144-213 (287)
434 cd01076 NAD_bind_1_Glu_DH NAD( 84.3 7.1 0.00015 29.9 7.5 34 139-173 30-63 (227)
435 PRK00676 hemA glutamyl-tRNA re 84.2 3.7 8E-05 33.4 6.1 37 139-176 173-210 (338)
436 PF01118 Semialdhyde_dh: Semia 84.2 3.3 7.1E-05 28.1 5.1 34 142-175 1-35 (121)
437 PRK14178 bifunctional 5,10-met 84.2 11 0.00025 29.8 8.6 69 120-190 132-201 (279)
438 PRK12779 putative bifunctional 83.8 3.9 8.4E-05 38.1 6.8 36 138-174 304-339 (944)
439 PRK14177 bifunctional 5,10-met 83.3 13 0.00029 29.5 8.7 58 120-177 139-196 (284)
440 PLN02306 hydroxypyruvate reduc 83.3 2.7 5.9E-05 34.9 5.1 35 139-174 164-199 (386)
441 COG0059 IlvC Ketol-acid reduct 83.2 2.8 6.1E-05 33.5 4.9 47 139-186 17-64 (338)
442 PF10686 DUF2493: Protein of u 83.2 4.9 0.00011 24.7 5.1 33 140-172 32-65 (71)
443 KOG2862 Alanine-glyoxylate ami 83.2 2.5 5.3E-05 34.0 4.5 36 137-173 89-124 (385)
444 TIGR01274 ACC_deam 1-aminocycl 83.2 5 0.00011 32.5 6.6 52 139-190 64-128 (337)
445 cd05191 NAD_bind_amino_acid_DH 83.1 7.6 0.00017 24.5 6.2 34 138-172 21-55 (86)
446 PRK09853 putative selenate red 83.1 4.5 9.7E-05 37.9 6.8 35 138-173 537-571 (1019)
447 KOG0029 Amine oxidase [Seconda 83.1 2.4 5.3E-05 36.4 4.9 35 139-174 14-48 (501)
448 PRK08317 hypothetical protein; 83.0 4.7 0.0001 30.3 6.1 49 133-183 13-63 (241)
449 TIGR01327 PGDH D-3-phosphoglyc 83.0 4 8.6E-05 35.4 6.2 34 139-173 137-170 (525)
450 PF00208 ELFV_dehydrog: Glutam 82.6 5.5 0.00012 30.8 6.3 33 138-171 30-62 (244)
451 PRK07364 2-octaprenyl-6-methox 82.6 2.4 5.2E-05 35.1 4.6 34 141-175 19-52 (415)
452 PLN02735 carbamoyl-phosphate s 82.6 3.2 7E-05 39.2 5.8 50 125-175 8-68 (1102)
453 PLN02172 flavin-containing mon 82.4 2.8 6.2E-05 35.6 5.0 34 140-174 10-43 (461)
454 PRK09288 purT phosphoribosylgl 82.1 4 8.8E-05 33.6 5.8 34 141-175 13-46 (395)
455 PRK12831 putative oxidoreducta 82.0 3.4 7.4E-05 35.1 5.4 35 138-173 138-172 (464)
456 PRK03910 D-cysteine desulfhydr 81.8 6.6 0.00014 31.7 6.8 49 141-189 65-125 (331)
457 PRK14045 1-aminocyclopropane-1 81.8 4.6 9.9E-05 32.7 5.8 48 141-188 71-123 (329)
458 PRK14186 bifunctional 5,10-met 81.7 17 0.00036 29.2 8.7 55 120-175 138-193 (297)
459 PF00289 CPSase_L_chain: Carba 81.7 3.1 6.7E-05 28.0 4.1 38 141-179 3-40 (110)
460 PRK14180 bifunctional 5,10-met 81.7 18 0.00039 28.8 8.8 56 120-175 138-193 (282)
461 PRK15409 bifunctional glyoxyla 81.4 3.3 7.2E-05 33.5 4.9 34 139-173 144-178 (323)
462 PRK13942 protein-L-isoaspartat 81.1 7.9 0.00017 29.1 6.6 48 133-182 70-119 (212)
463 cd00320 cpn10 Chaperonin 10 Kd 81.1 4.6 0.0001 26.3 4.6 25 65-89 35-68 (93)
464 PRK10537 voltage-gated potassi 80.9 7.7 0.00017 32.3 6.9 60 133-192 296-357 (393)
465 PLN02948 phosphoribosylaminoim 80.9 3.9 8.4E-05 35.9 5.4 37 138-175 20-56 (577)
466 PRK12483 threonine dehydratase 80.7 7.3 0.00016 33.8 6.9 46 144-189 88-136 (521)
467 PTZ00414 10 kDa heat shock pro 80.7 5.5 0.00012 26.4 4.9 23 66-88 46-72 (100)
468 PRK14190 bifunctional 5,10-met 80.7 15 0.00032 29.2 8.1 55 120-175 138-193 (284)
469 PLN02550 threonine dehydratase 80.6 9.6 0.00021 33.6 7.6 47 144-190 160-209 (591)
470 TIGR01042 V-ATPase_V1_A V-type 80.4 9 0.0002 33.5 7.3 59 117-176 203-263 (591)
471 PRK14171 bifunctional 5,10-met 80.0 21 0.00045 28.5 8.8 54 120-174 139-193 (288)
472 PRK12779 putative bifunctional 80.0 7.1 0.00015 36.4 7.0 34 139-173 446-479 (944)
473 KOG1481 Cysteine synthase [Ami 79.9 3.5 7.7E-05 32.7 4.3 53 133-186 93-148 (391)
474 PF13738 Pyr_redox_3: Pyridine 79.8 4.5 9.7E-05 29.6 4.9 37 139-176 166-202 (203)
475 PLN02516 methylenetetrahydrofo 79.7 22 0.00047 28.5 8.8 56 120-175 147-202 (299)
476 PLN02712 arogenate dehydrogena 79.7 6.8 0.00015 35.1 6.6 45 139-185 368-412 (667)
477 PRK08605 D-lactate dehydrogena 79.3 4.3 9.2E-05 32.9 4.9 36 139-175 145-181 (332)
478 KOG1429 dTDP-glucose 4-6-dehyd 79.3 6.2 0.00013 31.5 5.5 40 134-173 21-60 (350)
479 PRK13943 protein-L-isoaspartat 79.2 9.3 0.0002 30.9 6.7 52 133-186 74-131 (322)
480 PLN02927 antheraxanthin epoxid 79.1 4 8.6E-05 36.4 5.0 37 137-174 78-114 (668)
481 TIGR01275 ACC_deam_rel pyridox 79.1 6.6 0.00014 31.3 5.9 50 140-189 55-110 (311)
482 PRK14169 bifunctional 5,10-met 79.0 18 0.00039 28.7 8.1 54 120-173 136-189 (282)
483 PRK12770 putative glutamate sy 79.0 5 0.00011 32.6 5.3 37 137-174 15-51 (352)
484 PLN02712 arogenate dehydrogena 78.8 5.5 0.00012 35.6 5.8 44 141-186 53-96 (667)
485 TIGR01316 gltA glutamate synth 78.2 5 0.00011 33.9 5.2 35 138-173 131-165 (449)
486 PRK12390 1-aminocyclopropane-1 78.1 9.9 0.00022 30.8 6.7 49 141-189 68-128 (337)
487 COG5322 Predicted dehydrogenas 78.1 12 0.00027 29.6 6.7 53 140-192 167-225 (351)
488 PRK04176 ribulose-1,5-biphosph 78.0 4.9 0.00011 31.3 4.7 33 141-174 26-58 (257)
489 PRK12778 putative bifunctional 77.9 7.8 0.00017 35.1 6.6 55 137-192 567-630 (752)
490 PRK00364 groES co-chaperonin G 77.8 6.1 0.00013 25.8 4.4 25 65-89 36-69 (95)
491 TIGR01415 trpB_rel pyridoxal-p 77.6 12 0.00027 31.4 7.2 48 142-189 119-172 (419)
492 PRK09754 phenylpropionate diox 77.5 6.4 0.00014 32.5 5.6 36 137-173 141-176 (396)
493 PRK14533 groES co-chaperonin G 77.4 8.3 0.00018 25.0 4.9 24 66-89 37-64 (91)
494 PRK12770 putative glutamate sy 77.3 9.8 0.00021 30.9 6.5 49 140-189 172-229 (352)
495 PRK13028 tryptophan synthase s 77.2 13 0.00029 31.0 7.3 48 142-189 112-165 (402)
496 PRK05562 precorrin-2 dehydroge 77.2 7.2 0.00016 29.8 5.3 34 139-173 24-57 (223)
497 PRK14967 putative methyltransf 77.1 14 0.0003 27.9 6.9 46 134-182 31-77 (223)
498 TIGR00292 thiazole biosynthesi 77.0 5.2 0.00011 31.1 4.6 32 142-174 23-54 (254)
499 PRK14193 bifunctional 5,10-met 76.9 29 0.00064 27.6 8.7 54 120-174 138-194 (284)
500 COG2242 CobL Precorrin-6B meth 76.9 10 0.00023 28.1 5.8 51 135-187 30-85 (187)
No 1
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=100.00 E-value=6.8e-45 Score=286.48 Aligned_cols=187 Identities=35% Similarity=0.556 Sum_probs=177.2
Q ss_pred CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425 1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK 80 (193)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~ 80 (193)
|||++++++++| +++.+.+.|+|+++||+|+++++|+|++|++.++|.++... +|.++|||.+|+|+++|++++.|+
T Consensus 4 mkA~~~~~~~~p--l~i~e~~~p~p~~~eVlI~v~~~GVChsDlH~~~G~~~~~~-~P~ipGHEivG~V~~vG~~V~~~k 80 (339)
T COG1064 4 MKAAVLKKFGQP--LEIEEVPVPEPGPGEVLIKVEACGVCHTDLHVAKGDWPVPK-LPLIPGHEIVGTVVEVGEGVTGLK 80 (339)
T ss_pred eEEEEEccCCCC--ceEEeccCCCCCCCeEEEEEEEEeecchhhhhhcCCCCCCC-CCccCCcceEEEEEEecCCCccCC
Confidence 899999999988 88999999999999999999999999999999999988755 899999999999999999999999
Q ss_pred CCCEEEE----------------------------EccCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHH
Q 029425 81 VGDQVCA----------------------------LLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVF 132 (193)
Q Consensus 81 ~G~~V~~----------------------------~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~ 132 (193)
+||+|.. +..+|+|+||+++++++++++|+++++++||.+.+++.|.|++|
T Consensus 81 ~GDrVgV~~~~~~Cg~C~~C~~G~E~~C~~~~~~gy~~~GGyaeyv~v~~~~~~~iP~~~d~~~aApllCaGiT~y~al- 159 (339)
T COG1064 81 VGDRVGVGWLVISCGECEYCRSGNENLCPNQKITGYTTDGGYAEYVVVPARYVVKIPEGLDLAEAAPLLCAGITTYRAL- 159 (339)
T ss_pred CCCEEEecCccCCCCCCccccCcccccCCCccccceeecCcceeEEEEchHHeEECCCCCChhhhhhhhcCeeeEeeeh-
Confidence 9999964 11369999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425 133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFG 192 (193)
Q Consensus 133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~ 192 (193)
+..+++||++++|.|+ |++|.+++|+|+++|++|++++++++|+++++++|+++++|.+
T Consensus 160 k~~~~~pG~~V~I~G~-GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~ 218 (339)
T COG1064 160 KKANVKPGKWVAVVGA-GGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSS 218 (339)
T ss_pred hhcCCCCCCEEEEECC-cHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcC
Confidence 5589999999999998 8999999999999999999999999999999999999999964
No 2
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=100.00 E-value=4e-43 Score=280.56 Aligned_cols=193 Identities=39% Similarity=0.676 Sum_probs=182.7
Q ss_pred CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425 1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK 80 (193)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~ 80 (193)
||++++.+++.|..+++++.+.|.|+++||+|||+++++|+.|....+|......++|+++|.|++|+|+++|+++..|+
T Consensus 1 mka~~~~~~g~~~~l~~~e~~~P~p~~geVlVrV~a~gvN~~D~~~r~G~~~~~~~~P~i~G~d~aG~V~avG~~V~~~~ 80 (326)
T COG0604 1 MKAVVVEEFGGPEVLKVVEVPEPEPGPGEVLVRVKAAGVNPIDVLVRQGLAPPVRPLPFIPGSEAAGVVVAVGSGVTGFK 80 (326)
T ss_pred CeEEEEeccCCCceeEEEecCCCCCCCCeEEEEEEEeecChHHHHhccCCCCCCCCCCCcccceeEEEEEEeCCCCCCcC
Confidence 89999999999988999999999999999999999999999999999987444456799999999999999999999999
Q ss_pred CCCEEEEEc---cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHH
Q 029425 81 VGDQVCALL---GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAI 157 (193)
Q Consensus 81 ~G~~V~~~~---~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i 157 (193)
+||+|+... .+|+|+||+.++++.++++|+++++++||++++.++|||+++....++++|+++||+||+|++|.+++
T Consensus 81 ~GdrV~~~~~~~~~G~~AEy~~v~a~~~~~~P~~ls~~eAAal~~~~~TA~~~l~~~~~l~~g~~VLV~gaaGgVG~~ai 160 (326)
T COG0604 81 VGDRVAALGGVGRDGGYAEYVVVPADWLVPLPDGLSFEEAAALPLAGLTAWLALFDRAGLKPGETVLVHGAAGGVGSAAI 160 (326)
T ss_pred CCCEEEEccCCCCCCcceeEEEecHHHceeCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEecCCchHHHHHH
Confidence 999999986 67999999999999999999999999999999999999999999899999999999999999999999
Q ss_pred HHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCCC
Q 029425 158 QMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFGY 193 (193)
Q Consensus 158 ~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~~ 193 (193)
|+|+++|+++++++.++++.++++++|+|+++||++
T Consensus 161 QlAk~~G~~~v~~~~s~~k~~~~~~lGAd~vi~y~~ 196 (326)
T COG0604 161 QLAKALGATVVAVVSSSEKLELLKELGADHVINYRE 196 (326)
T ss_pred HHHHHcCCcEEEEecCHHHHHHHHhcCCCEEEcCCc
Confidence 999999998888888888888999999999999864
No 3
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.2e-38 Score=242.74 Aligned_cols=188 Identities=25% Similarity=0.367 Sum_probs=169.5
Q ss_pred EEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCCC
Q 029425 2 KAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKV 81 (193)
Q Consensus 2 ~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~~ 81 (193)
++|+++.++.....++.++++|+++++||+|+++|+|+|++|++.+.|..+. .++|.++|||++|+|+++|++++.|++
T Consensus 11 ~g~~~~~~~G~l~p~~~~~~~~~~g~~dv~vkI~~cGIChsDlH~~~gdwg~-s~~PlV~GHEiaG~VvkvGs~V~~~ki 89 (360)
T KOG0023|consen 11 FGWAARDPSGVLSPEVFSFPVREPGENDVLVKIEYCGVCHSDLHAWKGDWGL-SKYPLVPGHEIAGVVVKVGSNVTGFKI 89 (360)
T ss_pred EEEEEECCCCCCCcceeEcCCCCCCCCcEEEEEEEEeccchhHHHhhccCCc-ccCCccCCceeeEEEEEECCCcccccc
Confidence 5788888877655777899999999999999999999999999999999887 778999999999999999999999999
Q ss_pred CCEEEE-------------------Ec----------------cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHH
Q 029425 82 GDQVCA-------------------LL----------------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACT 126 (193)
Q Consensus 82 G~~V~~-------------------~~----------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~ 126 (193)
||+|-. +| ..|+|++|+++++.+.+++|++++++.||.++++..|
T Consensus 90 GD~vGVg~~~~sC~~CE~C~~~~E~yCpk~~~t~~g~~~DGt~~~ggf~~~~~v~~~~a~kIP~~~pl~~aAPlLCaGIT 169 (360)
T KOG0023|consen 90 GDRVGVGWLNGSCLSCEYCKSGNENYCPKMHFTYNGVYHDGTITQGGFQEYAVVDEVFAIKIPENLPLASAAPLLCAGIT 169 (360)
T ss_pred cCeeeeeEEeccccCccccccCCcccCCceeEeccccccCCCCccCccceeEEEeeeeEEECCCCCChhhccchhhcceE
Confidence 999842 00 1366999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc-chHHHHhhcCCcEEecCC
Q 029425 127 VWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA-TRFILCQPFNIRVFIGFG 192 (193)
Q Consensus 127 a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~-~~~~~~~~~G~~~~~~~~ 192 (193)
+|.+| ...++.||+++-|.|+ |++|.+++|+|++||.+|+++.+++ .|.+.++.|||+.++++.
T Consensus 170 vYspL-k~~g~~pG~~vgI~Gl-GGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd~fv~~~ 234 (360)
T KOG0023|consen 170 VYSPL-KRSGLGPGKWVGIVGL-GGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGADVFVDST 234 (360)
T ss_pred Eeehh-HHcCCCCCcEEEEecC-cccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcceeEEec
Confidence 99999 6678889999999998 6699999999999999999999988 566666779999999875
No 4
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.8e-37 Score=238.99 Aligned_cols=185 Identities=26% Similarity=0.306 Sum_probs=166.8
Q ss_pred CEEEEEcCCCCCCceEEEeecCCCC-CCCeEEEEEeEecCChhhhhhhcCCCCCC--CCCCCCCCcceEEEEEEecCCCC
Q 029425 1 MKAIVITQPGSPEVLQLQEVEDPQI-KDDEVLIKVEATALNRADTLQRKGSYPPP--KGASPYPGLECSGTILSVGKNVS 77 (193)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~-~~~evlV~v~~~~v~~~d~~~~~~~~~~~--~~~p~~lg~e~~G~V~~vG~~~~ 77 (193)
|+|+++.++++ +++++.+.|++ .++||+|++.+++||++|.+++....... .+.|+++|||.+|+|.++|+.+.
T Consensus 5 ~~A~vl~g~~d---i~i~~~p~p~i~~p~eVlv~i~a~GICGSDvHy~~~G~ig~~v~k~PmvlGHEssGiV~evG~~Vk 81 (354)
T KOG0024|consen 5 NLALVLRGKGD---IRIEQRPIPTITDPDEVLVAIKAVGICGSDVHYYTHGRIGDFVVKKPMVLGHESSGIVEEVGDEVK 81 (354)
T ss_pred cceeEEEccCc---eeEeeCCCCCCCCCCEEEEEeeeEEecCccchhhccCCcCccccccccccccccccchhhhccccc
Confidence 78999998776 88998898886 99999999999999999999988654322 25699999999999999999999
Q ss_pred CCCCCCEEEEEc----------------------------cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHH
Q 029425 78 RWKVGDQVCALL----------------------------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWS 129 (193)
Q Consensus 78 ~~~~G~~V~~~~----------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~ 129 (193)
++++||||+.-+ .+|++++|+..++++++++|++++++++| +..+.+.+|+
T Consensus 82 ~LkVGDrVaiEpg~~c~~cd~CK~GrYNlCp~m~f~atpp~~G~la~y~~~~~dfc~KLPd~vs~eeGA-l~ePLsV~~H 160 (354)
T KOG0024|consen 82 HLKVGDRVAIEPGLPCRDCDFCKEGRYNLCPHMVFCATPPVDGTLAEYYVHPADFCYKLPDNVSFEEGA-LIEPLSVGVH 160 (354)
T ss_pred ccccCCeEEecCCCccccchhhhCcccccCCccccccCCCcCCceEEEEEechHheeeCCCCCchhhcc-cccchhhhhh
Confidence 999999998422 25999999999999999999999999987 4567899999
Q ss_pred HHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHhhcCCcEEecC
Q 029425 130 TVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQPFNIRVFIGF 191 (193)
Q Consensus 130 ~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~~~G~~~~~~~ 191 (193)
|. +++++++|+++||+|| |.+|+++...|+++|+ +|++++-.++|++.++++||+.+.+.
T Consensus 161 Ac-r~~~vk~Gs~vLV~GA-GPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~ 221 (354)
T KOG0024|consen 161 AC-RRAGVKKGSKVLVLGA-GPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPS 221 (354)
T ss_pred hh-hhcCcccCCeEEEECC-cHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeec
Confidence 99 7899999999999998 9999999999999998 89999999999999999999888764
No 5
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=100.00 E-value=1.3e-36 Score=227.03 Aligned_cols=191 Identities=34% Similarity=0.502 Sum_probs=182.7
Q ss_pred EEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCCC
Q 029425 2 KAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKV 81 (193)
Q Consensus 2 ~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~~ 81 (193)
|-+++++.|.++.+++++.+.|+|.++|++||.+++|+|+.|..+.+|.+. +...|.++|.|++|+|+++|++++++++
T Consensus 10 k~i~v~e~Ggydvlk~ed~pv~~papgel~iknka~GlNfid~y~RkGlY~-~~plPytpGmEaaGvVvAvG~gvtdrkv 88 (336)
T KOG1197|consen 10 KCIVVTEFGGYDVLKLEDRPVPPPAPGELTIKNKACGLNFIDLYFRKGLYD-PAPLPYTPGMEAAGVVVAVGEGVTDRKV 88 (336)
T ss_pred eEEEEeccCCcceEEEeeecCCCCCCCceEEeehhcCccHHHHHHhccccC-CCCCCcCCCcccceEEEEecCCcccccc
Confidence 568889999999999999999999999999999999999999999999986 4557999999999999999999999999
Q ss_pred CCEEEEEccCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHH
Q 029425 82 GDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGK 161 (193)
Q Consensus 82 G~~V~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~ 161 (193)
||+|.-+.+.|.|+++.++|...++++|+.++++++|++...++|||.-+++..++++|++||++.|+|++|++++|+++
T Consensus 89 GDrVayl~~~g~yaee~~vP~~kv~~vpe~i~~k~aaa~llq~lTAy~ll~e~y~vkpGhtVlvhaAAGGVGlll~Ql~r 168 (336)
T KOG1197|consen 89 GDRVAYLNPFGAYAEEVTVPSVKVFKVPEAITLKEAAALLLQGLTAYMLLFEAYNVKPGHTVLVHAAAGGVGLLLCQLLR 168 (336)
T ss_pred ccEEEEeccchhhheeccccceeeccCCcccCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccHHHHHHHHHH
Confidence 99999888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HCCCEEEEEeCCcchHHHHhhcCCcEEecCCC
Q 029425 162 CQGVRVFVTAGLATRFILCQPFNIRVFIGFGY 193 (193)
Q Consensus 162 ~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~~ 193 (193)
..|+.+|.++.+.+|.+.+++.|+.+.|||++
T Consensus 169 a~~a~tI~~asTaeK~~~akenG~~h~I~y~~ 200 (336)
T KOG1197|consen 169 AVGAHTIATASTAEKHEIAKENGAEHPIDYST 200 (336)
T ss_pred hcCcEEEEEeccHHHHHHHHhcCCcceeeccc
Confidence 99999999999999999999999999999864
No 6
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=100.00 E-value=6.2e-36 Score=243.82 Aligned_cols=189 Identities=27% Similarity=0.353 Sum_probs=172.1
Q ss_pred CEEEEEcCCCC------CCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecC
Q 029425 1 MKAIVITQPGS------PEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGK 74 (193)
Q Consensus 1 m~a~~~~~~~~------~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~ 74 (193)
|||+++.+++. +..+++++.+.|.|+++||+||+.++++|++|++.+.|.++. .+|.++|||++|+|+++|+
T Consensus 1 mka~~~~~~g~~~~~~~~~~l~~~~~~~P~~~~~evlV~v~~~gi~~~D~~~~~g~~~~--~~p~i~GhE~~G~V~~vG~ 78 (371)
T cd08281 1 MRAAVLRETGAPTPYADSRPLVIEEVELDPPGPGEVLVKIAAAGLCHSDLSVINGDRPR--PLPMALGHEAAGVVVEVGE 78 (371)
T ss_pred CcceEEEecccccccccCCCceEEEeecCCCCCCeEEEEEEEEeeCccchHhhcCCCCC--CCCccCCccceeEEEEeCC
Confidence 99999999875 367999999999999999999999999999999998886542 3589999999999999999
Q ss_pred CCCCCCCCCEEEEEcc------------------------------------------------CceeeeEEeecCCceE
Q 029425 75 NVSRWKVGDQVCALLG------------------------------------------------GGGYAEKVAVPAGQVL 106 (193)
Q Consensus 75 ~~~~~~~G~~V~~~~~------------------------------------------------~g~~~~~~~~~~~~~~ 106 (193)
++..+++||+|+.... .|+|++|+.++++.++
T Consensus 79 ~v~~~~~GdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~g~G~~aey~~v~~~~~~ 158 (371)
T cd08281 79 GVTDLEVGDHVVLVFVPSCGHCRPCAEGRPALCEPGAAANGAGTLLSGGRRLRLRGGEINHHLGVSAFAEYAVVSRRSVV 158 (371)
T ss_pred CCCcCCCCCEEEEccCCCCCCCccccCCCcccccCccccccccccccCcccccccCcccccccCcccceeeEEecccceE
Confidence 9999999999986310 2689999999999999
Q ss_pred ECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHhhcCC
Q 029425 107 PVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQPFNI 185 (193)
Q Consensus 107 ~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~~~G~ 185 (193)
++|+++++++++.+..+..++|+++....+++++++++|.|+ |.+|++++|+++.+|+ +|++++++++|++.++++|+
T Consensus 159 ~lP~~l~~~~aa~~~~~~~ta~~~~~~~~~i~~g~~VlV~G~-G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga 237 (371)
T cd08281 159 KIDKDVPLEIAALFGCAVLTGVGAVVNTAGVRPGQSVAVVGL-GGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGA 237 (371)
T ss_pred ECCCCCChHHhhhhcchHHHHHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCC
Confidence 999999999999998899999999877888999999999996 9999999999999999 69999999999999999999
Q ss_pred cEEecCC
Q 029425 186 RVFIGFG 192 (193)
Q Consensus 186 ~~~~~~~ 192 (193)
++++|++
T Consensus 238 ~~~i~~~ 244 (371)
T cd08281 238 TATVNAG 244 (371)
T ss_pred ceEeCCC
Confidence 9999875
No 7
>PLN02740 Alcohol dehydrogenase-like
Probab=100.00 E-value=1.1e-35 Score=243.22 Aligned_cols=189 Identities=22% Similarity=0.302 Sum_probs=171.2
Q ss_pred CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425 1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK 80 (193)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~ 80 (193)
|||++++.++++ +.+++.+.|.|+++||+||+.++++|++|++.+.|.+.....+|.++|||++|+|+++|+++..|+
T Consensus 11 mka~~~~~~~~~--~~~~e~~~P~~~~~eVlV~v~~~gic~sD~~~~~g~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~~ 88 (381)
T PLN02740 11 CKAAVAWGPGEP--LVMEEIRVDPPQKMEVRIKILYTSICHTDLSAWKGENEAQRAYPRILGHEAAGIVESVGEGVEDLK 88 (381)
T ss_pred eEEEEEecCCCC--cEEEEeeCCCCCCCeEEEEEEEEecChhhHHHhCCCCcccCCCCccccccceEEEEEeCCCCCcCC
Confidence 899999987654 778899999999999999999999999999999887643345689999999999999999999999
Q ss_pred CCCEEEEEc---------------------------------------------------cCceeeeEEeecCCceEECC
Q 029425 81 VGDQVCALL---------------------------------------------------GGGGYAEKVAVPAGQVLPVP 109 (193)
Q Consensus 81 ~G~~V~~~~---------------------------------------------------~~g~~~~~~~~~~~~~~~~p 109 (193)
+||+|+... .+|+|++|+.++.+.++++|
T Consensus 89 vGdrV~~~~~~~cg~C~~c~~g~~~~C~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~G~~aey~~v~~~~~~~iP 168 (381)
T PLN02740 89 AGDHVIPIFNGECGDCRYCKRDKTNLCETYRVDPFKSVMVNDGKTRFSTKGDGQPIYHFLNTSTFTEYTVLDSACVVKID 168 (381)
T ss_pred CCCEEEecCCCCCCCChhhcCCCcccccCccccccccccccCCCcccccccCCCcccccccCccceeEEEEehHHeEECC
Confidence 999998642 14899999999999999999
Q ss_pred CCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHhhcCCcEE
Q 029425 110 SGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQPFNIRVF 188 (193)
Q Consensus 110 ~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~~~G~~~~ 188 (193)
+++++++++.++.++.++|+++....++++|++++|+|+ |.+|++++|+|+.+|+ +|+++++++++++.++++|++.+
T Consensus 169 ~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G~-G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~ 247 (381)
T PLN02740 169 PNAPLKKMSLLSCGVSTGVGAAWNTANVQAGSSVAIFGL-GAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGITDF 247 (381)
T ss_pred CCCCHHHhhhhcccchhhHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCCcEE
Confidence 999999999888899999998877789999999999996 9999999999999999 69999999999999999999999
Q ss_pred ecCC
Q 029425 189 IGFG 192 (193)
Q Consensus 189 ~~~~ 192 (193)
+|++
T Consensus 248 i~~~ 251 (381)
T PLN02740 248 INPK 251 (381)
T ss_pred Eecc
Confidence 9875
No 8
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=100.00 E-value=1.8e-35 Score=240.90 Aligned_cols=188 Identities=24% Similarity=0.327 Sum_probs=170.7
Q ss_pred CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425 1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK 80 (193)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~ 80 (193)
|||+++...+.+ +++++.+.|+|+++||+|||.++++|++|++.+.|.++. ..+|.++|||++|+|+++|+++..|+
T Consensus 2 ~~a~~~~~~~~~--l~~~~~~~P~~~~~eVlI~v~a~gi~~sD~~~~~g~~~~-~~~p~i~GhE~~G~V~~vG~~v~~~~ 78 (368)
T TIGR02818 2 SRAAVAWAAGQP--LKIEEVDVEMPQKGEVLVRIVATGVCHTDAFTLSGADPE-GVFPVILGHEGAGIVEAVGEGVTSVK 78 (368)
T ss_pred ceEEEEecCCCC--eEEEEecCCCCCCCeEEEEEEEecccHHHHHHhcCCCCC-CCCCeeeccccEEEEEEECCCCccCC
Confidence 899999887654 888899999999999999999999999999988887643 24689999999999999999999999
Q ss_pred CCCEEEEEcc------------------------------------------------CceeeeEEeecCCceEECCCCC
Q 029425 81 VGDQVCALLG------------------------------------------------GGGYAEKVAVPAGQVLPVPSGV 112 (193)
Q Consensus 81 ~G~~V~~~~~------------------------------------------------~g~~~~~~~~~~~~~~~~p~~~ 112 (193)
+||+|..... +|+|++|+.++.+.++++|+++
T Consensus 79 ~GdrV~~~~~~~cg~C~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~lP~~l 158 (368)
T TIGR02818 79 VGDHVIPLYTAECGECKFCLSGKTNLCVAVRETQGKGLMPDGTSRFSKDGQPIYHYMGCSTFSEYTVVPEISLAKINPAA 158 (368)
T ss_pred CCCEEEEcCCCCCCCChhhhCCCcccccCcccccccccccCCccccccCCCcccccccCccceeeEEechhheEECCCCC
Confidence 9999976421 2689999999999999999999
Q ss_pred CHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHhhcCCcEEecC
Q 029425 113 SLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQPFNIRVFIGF 191 (193)
Q Consensus 113 ~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~~~G~~~~~~~ 191 (193)
++++++.++.++.++|+++....++++|++++|+|+ |.+|++++|+|+++|+ +|+++++++++++.++++|+++++|+
T Consensus 159 ~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~-G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga~~~i~~ 237 (368)
T TIGR02818 159 PLEEVCLLGCGVTTGIGAVLNTAKVEEGDTVAVFGL-GGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGATDCVNP 237 (368)
T ss_pred CHHHhhhhcchhHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCeEEcc
Confidence 999999999899999999877889999999999986 9999999999999999 79999999999999999999999986
Q ss_pred C
Q 029425 192 G 192 (193)
Q Consensus 192 ~ 192 (193)
+
T Consensus 238 ~ 238 (368)
T TIGR02818 238 N 238 (368)
T ss_pred c
Confidence 4
No 9
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=100.00 E-value=1.9e-35 Score=238.06 Aligned_cols=187 Identities=26% Similarity=0.381 Sum_probs=168.5
Q ss_pred CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425 1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK 80 (193)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~ 80 (193)
|||+++..++ .+++++.+.|.|+++||+||+.++++|++|+..+.+.+......|.++|||++|+|+++|+++..++
T Consensus 1 mka~~~~~~~---~l~~~~~~~p~~~~~evlV~v~~~gi~~~D~~~~~~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~ 77 (339)
T cd08239 1 MRGAVFPGDR---TVELREFPVPVPGPGEVLLRVKASGLCGSDLHYYYHGHRAPAYQGVIPGHEPAGVVVAVGPGVTHFR 77 (339)
T ss_pred CeEEEEecCC---ceEEEecCCCCCCCCeEEEEEEEEEeccccHHHHcCCCCccCCCCceeccCceEEEEEECCCCccCC
Confidence 8999998643 4899999999999999999999999999999888766433233578999999999999999999999
Q ss_pred CCCEEEEEc----------------------------cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHH
Q 029425 81 VGDQVCALL----------------------------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVF 132 (193)
Q Consensus 81 ~G~~V~~~~----------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~ 132 (193)
+||+|+..+ .+|+|++|+.++.+.++++|+++++++++.++.++.++|+++
T Consensus 78 ~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~g~~~~G~~ae~~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l- 156 (339)
T cd08239 78 VGDRVMVYHYVGCGACRNCRRGWMQLCTSKRAAYGWNRDGGHAEYMLVPEKTLIPLPDDLSFADGALLLCGIGTAYHAL- 156 (339)
T ss_pred CCCEEEECCCCCCCCChhhhCcCcccCcCcccccccCCCCcceeEEEechHHeEECCCCCCHHHhhhhcchHHHHHHHH-
Confidence 999998643 258899999999999999999999999999999999999999
Q ss_pred HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCE-EEEEeCCcchHHHHhhcCCcEEecCC
Q 029425 133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVR-VFVTAGLATRFILCQPFNIRVFIGFG 192 (193)
Q Consensus 133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~-v~~~~~~~~~~~~~~~~G~~~~~~~~ 192 (193)
....+++|++++|+|+ |.+|++++|+++++|++ |+++++++++.+.++++|++.++|++
T Consensus 157 ~~~~~~~g~~vlV~G~-G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~ 216 (339)
T cd08239 157 RRVGVSGRDTVLVVGA-GPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSG 216 (339)
T ss_pred HhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCC
Confidence 5677899999999986 99999999999999998 99999999999999999999999875
No 10
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=100.00 E-value=8.5e-36 Score=231.54 Aligned_cols=188 Identities=27% Similarity=0.377 Sum_probs=176.4
Q ss_pred CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425 1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK 80 (193)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~ 80 (193)
+||.++.++++| |+++|.++.+|+++||+||+.++|+|++|....+|.++.+ +|.+||||++|+|++||+++..++
T Consensus 3 ~~aAV~~~~~~P--l~i~ei~l~~P~~gEVlVri~AtGVCHTD~~~~~G~~p~~--~P~vLGHEgAGiVe~VG~gVt~vk 78 (366)
T COG1062 3 TRAAVAREAGKP--LEIEEVDLDPPRAGEVLVRITATGVCHTDAHTLSGDDPEG--FPAVLGHEGAGIVEAVGEGVTSVK 78 (366)
T ss_pred ceEeeeecCCCC--eEEEEEecCCCCCCeEEEEEEEeeccccchhhhcCCCCCC--CceecccccccEEEEecCCccccC
Confidence 579999999998 9999999999999999999999999999999999998876 899999999999999999999999
Q ss_pred CCCEEEEEc------------------------------------------------cCceeeeEEeecCCceEECCCCC
Q 029425 81 VGDQVCALL------------------------------------------------GGGGYAEKVAVPAGQVLPVPSGV 112 (193)
Q Consensus 81 ~G~~V~~~~------------------------------------------------~~g~~~~~~~~~~~~~~~~p~~~ 112 (193)
+||+|+..+ .-++|++|..+++..+++++++.
T Consensus 79 pGDhVI~~f~p~CG~C~~C~sGk~nlC~~~~~~~~kG~m~dGttrls~~~~~~~h~lG~stFa~y~vv~~~s~vki~~~~ 158 (366)
T COG1062 79 PGDHVILLFTPECGQCKFCLSGKPNLCEAIRATQGKGTMPDGTTRLSGNGVPVYHYLGCSTFAEYTVVHEISLVKIDPDA 158 (366)
T ss_pred CCCEEEEcccCCCCCCchhhCCCcccccchhhhcccccccCCceeeecCCcceeeeeccccchhheeecccceEECCCCC
Confidence 999998532 01489999999999999999999
Q ss_pred CHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHhhcCCcEEecC
Q 029425 113 SLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQPFNIRVFIGF 191 (193)
Q Consensus 113 ~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~~~G~~~~~~~ 191 (193)
+++.++.+.+...|.+-+....+++++|+++.|.|- |.+|++++|-|+..|+ ++|+++.+++|++++++||+++++|.
T Consensus 159 p~~~a~llGCgV~TG~Gav~nta~v~~G~tvaV~Gl-GgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~~vn~ 237 (366)
T COG1062 159 PLEKACLLGCGVTTGIGAVVNTAKVEPGDTVAVFGL-GGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHFVNP 237 (366)
T ss_pred CccceEEEeeeeccChHHhhhcccCCCCCeEEEEec-cHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCceeecc
Confidence 999999999999999998889999999999999997 9999999999999999 89999999999999999999999998
Q ss_pred CC
Q 029425 192 GY 193 (193)
Q Consensus 192 ~~ 193 (193)
++
T Consensus 238 ~~ 239 (366)
T COG1062 238 KE 239 (366)
T ss_pred hh
Confidence 63
No 11
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=100.00 E-value=6.8e-35 Score=236.62 Aligned_cols=187 Identities=22% Similarity=0.296 Sum_probs=170.2
Q ss_pred CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425 1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK 80 (193)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~ 80 (193)
|||+++++++.+ +++++.+.|+|+++||+|||.++++|++|+....|..+. .+|.++|||++|+|+++|+++.+|+
T Consensus 2 mka~~~~~~~~~--~~~~~~~~p~~~~~evlV~v~~~gi~~~D~~~~~g~~~~--~~p~i~G~e~~G~V~~vG~~v~~~~ 77 (358)
T TIGR03451 2 VRGVIARSKGAP--VELETIVVPDPGPGEVIVDIQACGVCHTDLHYREGGIND--EFPFLLGHEAAGVVEAVGEGVTDVA 77 (358)
T ss_pred cEEEEEccCCCC--CEEEEEECCCCCCCeEEEEEEEEeecHHHHHHhcCCccc--cCCcccccceEEEEEEeCCCCcccC
Confidence 999999998876 788999999999999999999999999999988886542 3688999999999999999999999
Q ss_pred CCCEEEEEc----------------------------------------cCceeeeEEeecCCceEECCCCCCHHhHccC
Q 029425 81 VGDQVCALL----------------------------------------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAF 120 (193)
Q Consensus 81 ~G~~V~~~~----------------------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~ 120 (193)
+||+|...+ .+|+|++|+.++++.++++|+++++++++.+
T Consensus 78 ~GdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~~~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~ip~~~~~~~aa~l 157 (358)
T TIGR03451 78 PGDYVVLNWRAVCGQCRACKRGRPWYCFDTHNATQKMTLTDGTELSPALGIGAFAEKTLVHAGQCTKVDPAADPAAAGLL 157 (358)
T ss_pred CCCEEEEccCCCCCCChHHhCcCcccCcCccccccccccccCcccccccccccccceEEEehhheEECCCCCChhHhhhh
Confidence 999997521 2488999999999999999999999999988
Q ss_pred cchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCE-EEEEeCCcchHHHHhhcCCcEEecCC
Q 029425 121 PEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVR-VFVTAGLATRFILCQPFNIRVFIGFG 192 (193)
Q Consensus 121 ~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~-v~~~~~~~~~~~~~~~~G~~~~~~~~ 192 (193)
+..+.++|+++....+++++++++|+|+ |.+|++++|+|+.+|++ |++++++++++++++++|++.++|++
T Consensus 158 ~~~~~ta~~~~~~~~~~~~g~~VlV~G~-g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~ 229 (358)
T TIGR03451 158 GCGVMAGLGAAVNTGGVKRGDSVAVIGC-GGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSS 229 (358)
T ss_pred cccchhhHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcCC
Confidence 8889999988877888999999999986 99999999999999995 99999999999999999999999875
No 12
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=100.00 E-value=1.5e-34 Score=235.52 Aligned_cols=188 Identities=22% Similarity=0.294 Sum_probs=170.5
Q ss_pred CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425 1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK 80 (193)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~ 80 (193)
|||+++.+++.+ +++++.+.|+|+++||+||+.++++|++|+..+.|..+. ..+|.++|||++|+|+++|+++.+|+
T Consensus 3 ~ka~~~~~~~~~--~~l~~~~~p~~~~~evlIkv~a~gi~~~D~~~~~g~~~~-~~~p~i~G~e~~G~V~~vG~~v~~~~ 79 (369)
T cd08301 3 CKAAVAWEAGKP--LVIEEVEVAPPQAMEVRIKILHTSLCHTDVYFWEAKGQT-PLFPRILGHEAAGIVESVGEGVTDLK 79 (369)
T ss_pred cEEEEEecCCCC--cEEEEeeCCCCCCCeEEEEEEEEeeCchhHHHhcCCCCC-CCCCcccccccceEEEEeCCCCCccc
Confidence 799999887655 888999999999999999999999999999988887542 34689999999999999999999999
Q ss_pred CCCEEEEEc-------------------------------------------------cCceeeeEEeecCCceEECCCC
Q 029425 81 VGDQVCALL-------------------------------------------------GGGGYAEKVAVPAGQVLPVPSG 111 (193)
Q Consensus 81 ~G~~V~~~~-------------------------------------------------~~g~~~~~~~~~~~~~~~~p~~ 111 (193)
+||+|+.+. ..|+|++|+.+++..++++|++
T Consensus 80 ~GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~~ 159 (369)
T cd08301 80 PGDHVLPVFTGECKECRHCKSEKSNMCDLLRINTDRGVMINDGKSRFSINGKPIYHFVGTSTFSEYTVVHVGCVAKINPE 159 (369)
T ss_pred cCCEEEEccCCCCCCCchhcCCCcccCcCcccccccccccCCCccccccCCcceeeeeccccceeEEEEecccEEECCCC
Confidence 999998642 1378999999999999999999
Q ss_pred CCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHhhcCCcEEec
Q 029425 112 VSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQPFNIRVFIG 190 (193)
Q Consensus 112 ~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~~~G~~~~~~ 190 (193)
+++++++.++..+.++|+++....++++|++|+|+|+ |.+|++++|+++.+|+ +|+++++++++.++++++|++.++|
T Consensus 160 ~~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~-g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~Ga~~~i~ 238 (369)
T cd08301 160 APLDKVCLLSCGVSTGLGAAWNVAKVKKGSTVAIFGL-GAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGVTEFVN 238 (369)
T ss_pred CCHHHhhhhcchhhHHHHHHHhhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEc
Confidence 9999999888899999998877789999999999986 9999999999999999 7999999999999999999999998
Q ss_pred CC
Q 029425 191 FG 192 (193)
Q Consensus 191 ~~ 192 (193)
++
T Consensus 239 ~~ 240 (369)
T cd08301 239 PK 240 (369)
T ss_pred cc
Confidence 75
No 13
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=100.00 E-value=1.8e-34 Score=235.01 Aligned_cols=188 Identities=28% Similarity=0.335 Sum_probs=170.0
Q ss_pred CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425 1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK 80 (193)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~ 80 (193)
|||+++...+.+ +++++.+.|.|+++||+||+.++++|++|+..+.|.++. ..+|.++|||++|+|+++|+++..|+
T Consensus 3 ~~a~~~~~~~~~--~~~~~~~~P~~~~~eVlIrv~a~gi~~~D~~~~~g~~~~-~~~p~v~G~E~~G~V~~vG~~v~~~~ 79 (368)
T cd08300 3 CKAAVAWEAGKP--LSIEEVEVAPPKAGEVRIKILATGVCHTDAYTLSGADPE-GLFPVILGHEGAGIVESVGEGVTSVK 79 (368)
T ss_pred ceEEEEecCCCC--cEEEEeecCCCCCCEEEEEEEEEEechhhHHHhcCCCcc-CCCCceeccceeEEEEEeCCCCccCC
Confidence 789998876654 888899999999999999999999999999988887653 24689999999999999999999999
Q ss_pred CCCEEEEEc------------------------------------------------cCceeeeEEeecCCceEECCCCC
Q 029425 81 VGDQVCALL------------------------------------------------GGGGYAEKVAVPAGQVLPVPSGV 112 (193)
Q Consensus 81 ~G~~V~~~~------------------------------------------------~~g~~~~~~~~~~~~~~~~p~~~ 112 (193)
+||+|+... ..|+|++|+.++++.++++|+++
T Consensus 80 vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~~g~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~~l 159 (368)
T cd08300 80 PGDHVIPLYTPECGECKFCKSGKTNLCQKIRATQGKGLMPDGTSRFSCKGKPIYHFMGTSTFSEYTVVAEISVAKINPEA 159 (368)
T ss_pred CCCEEEEcCCCCCCCChhhcCCCcCcCCCccccccccccCCCccccccCCcccccccccccceeEEEEchhceEeCCCCC
Confidence 999998641 12589999999999999999999
Q ss_pred CHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHhhcCCcEEecC
Q 029425 113 SLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQPFNIRVFIGF 191 (193)
Q Consensus 113 ~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~~~G~~~~~~~ 191 (193)
++++++.++.++.++|+++....+++++++++|+|+ |.+|++++|+|+.+|+ +|+++++++++++.++++|+++++|+
T Consensus 160 ~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~-G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~lGa~~~i~~ 238 (368)
T cd08300 160 PLDKVCLLGCGVTTGYGAVLNTAKVEPGSTVAVFGL-GAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKFGATDCVNP 238 (368)
T ss_pred ChhhhhhhccchhhhHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCEEEcc
Confidence 999999998899999999877788999999999986 9999999999999999 79999999999999999999999987
Q ss_pred C
Q 029425 192 G 192 (193)
Q Consensus 192 ~ 192 (193)
+
T Consensus 239 ~ 239 (368)
T cd08300 239 K 239 (368)
T ss_pred c
Confidence 5
No 14
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=100.00 E-value=1.7e-34 Score=231.94 Aligned_cols=187 Identities=25% Similarity=0.331 Sum_probs=167.2
Q ss_pred EEEEcCCCCC--CceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425 3 AIVITQPGSP--EVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK 80 (193)
Q Consensus 3 a~~~~~~~~~--~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~ 80 (193)
|+.+.+++.+ ..+++++.+.|.|+++|++||+.++++|++|.+...|.++. ...|.++|||++|+|+++|+++..|+
T Consensus 1 ~~~~~~~g~~~~~~l~~~~~p~P~~~~~evlVkv~~~gi~~~D~~~~~g~~~~-~~~p~i~G~e~~G~V~~vG~~v~~~~ 79 (329)
T TIGR02822 1 AWEVERPGPIEDGPLRFVERPVPRPGPGELLVRVRACGVCRTDLHVSEGDLPV-HRPRVTPGHEVVGEVAGRGADAGGFA 79 (329)
T ss_pred CeeeecCCcCCCCCceEEeCCCCCCCCCeEEEEEEEEeecchhHHHHcCCCCC-CCCCccCCcceEEEEEEECCCCcccC
Confidence 3566777655 46899999999999999999999999999999999887643 23478999999999999999999999
Q ss_pred CCCEEEEE----------------------------ccCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHH
Q 029425 81 VGDQVCAL----------------------------LGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVF 132 (193)
Q Consensus 81 ~G~~V~~~----------------------------~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~ 132 (193)
+||+|+.. ..+|+|++|+.++++.++++|+++++++++.++.++.++|+++.
T Consensus 80 ~Gd~V~~~~~~~~c~~c~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~lP~~~~~~~aa~l~~~~~ta~~~~~ 159 (329)
T TIGR02822 80 VGDRVGIAWLRRTCGVCRYCRRGAENLCPASRYTGWDTDGGYAEYTTVPAAFAYRLPTGYDDVELAPLLCAGIIGYRALL 159 (329)
T ss_pred CCCEEEEcCccCcCCCChHHhCcCcccCCCcccCCcccCCcceeEEEeccccEEECCCCCCHHHhHHHhccchHHHHHHH
Confidence 99999742 12589999999999999999999999999999999999999994
Q ss_pred HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425 133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFG 192 (193)
Q Consensus 133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~ 192 (193)
..++++|++++|+|+ |.+|++++|+|+.+|++|++++++++|+++++++|+++++|+.
T Consensus 160 -~~~~~~g~~VlV~G~-g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~~ 217 (329)
T TIGR02822 160 -RASLPPGGRLGLYGF-GGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAGGAY 217 (329)
T ss_pred -hcCCCCCCEEEEEcC-CHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceecccc
Confidence 688999999999997 9999999999999999999999999999999999999999853
No 15
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=100.00 E-value=5.2e-34 Score=228.45 Aligned_cols=190 Identities=31% Similarity=0.430 Sum_probs=167.9
Q ss_pred CEEEEEcCCCCC---CceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCC
Q 029425 1 MKAIVITQPGSP---EVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVS 77 (193)
Q Consensus 1 m~a~~~~~~~~~---~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~ 77 (193)
|||+++..++.| ..+++.+.+.|.|+++||+||+.++++|++|+..+.|.++....+|.++|||++|+|+++|+++.
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~gi~~~d~~~~~g~~~~~~~~p~v~G~e~~G~V~~vG~~v~ 80 (324)
T cd08291 1 MKALLLEEYGKPLEVKELSLPEPEVPEPGPGEVLIKVEAAPINPSDLGFLKGQYGSTKALPVPPGFEGSGTVVAAGGGPL 80 (324)
T ss_pred CeEEEEeecCCCccccEEEecccCCCCCCCCeEEEEEEEccCCHHHHHHhcCcCCCCCCCCcCCCcceEEEEEEECCCcc
Confidence 899999998876 56888899999999999999999999999999998887654445689999999999999999998
Q ss_pred C-CCCCCEEEEEcc-CceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEE-cCCchHHH
Q 029425 78 R-WKVGDQVCALLG-GGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVH-GGSSGIGT 154 (193)
Q Consensus 78 ~-~~~G~~V~~~~~-~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~-ga~g~~G~ 154 (193)
+ |++||+|+++.. +|+|++|+.++++.++++|++++++++++++..++++|..+ ..... ++++++|+ +++|.+|+
T Consensus 81 ~~~~vGd~V~~~~~~~g~~a~~~~v~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~~-~~~~~-~~~~vlv~~~g~g~vG~ 158 (324)
T cd08291 81 AQSLIGKRVAFLAGSYGTYAEYAVADAQQCLPLPDGVSFEQGASSFVNPLTALGML-ETARE-EGAKAVVHTAAASALGR 158 (324)
T ss_pred ccCCCCCEEEecCCCCCcchheeeecHHHeEECCCCCCHHHHhhhcccHHHHHHHH-Hhhcc-CCCcEEEEccCccHHHH
Confidence 6 999999998754 38999999999999999999999999988888889998554 45555 45556565 77899999
Q ss_pred HHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425 155 FAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFG 192 (193)
Q Consensus 155 ~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~ 192 (193)
+++|+++.+|++|+++++++++.+.++++|+++++|++
T Consensus 159 ~a~q~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~ 196 (324)
T cd08291 159 MLVRLCKADGIKVINIVRRKEQVDLLKKIGAEYVLNSS 196 (324)
T ss_pred HHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCcEEEECC
Confidence 99999999999999999999999999999999999875
No 16
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=100.00 E-value=6.6e-34 Score=231.05 Aligned_cols=190 Identities=24% Similarity=0.328 Sum_probs=163.4
Q ss_pred CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425 1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK 80 (193)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~ 80 (193)
||++.+...+.+..+++.+.+.|.|+++||+||+.++++|++|++.+.|.++. ..+|.++|||++|+|+++|+++..|+
T Consensus 11 ~~~~~~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~~~gic~sD~~~~~g~~~~-~~~p~i~GhE~~G~V~~vG~~v~~~~ 89 (360)
T PLN02586 11 QKAFGWAARDPSGVLSPFHFSRRENGDEDVTVKILYCGVCHSDLHTIKNEWGF-TRYPIVPGHEIVGIVTKLGKNVKKFK 89 (360)
T ss_pred hheeEEEecCCCCCceEEeecCCCCCCCeEEEEEEEecCChhhHhhhcCCcCC-CCCCccCCcceeEEEEEECCCCCccC
Confidence 55555555555556888889899999999999999999999999988876542 24689999999999999999999999
Q ss_pred CCCEEEEEc-----------------------------------cCceeeeEEeecCCceEECCCCCCHHhHccCcchHH
Q 029425 81 VGDQVCALL-----------------------------------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVAC 125 (193)
Q Consensus 81 ~G~~V~~~~-----------------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ 125 (193)
+||+|+..+ .+|+|++|+.++++.++++|+++++++++++...+.
T Consensus 90 vGdrV~~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~lP~~ls~~~aa~l~~~~~ 169 (360)
T PLN02586 90 EGDRVGVGVIVGSCKSCESCDQDLENYCPKMIFTYNSIGHDGTKNYGGYSDMIVVDQHFVLRFPDNLPLDAGAPLLCAGI 169 (360)
T ss_pred CCCEEEEccccCcCCCCccccCCCcccCCCccccccccccCCCcCCCccceEEEEchHHeeeCCCCCCHHHhhhhhcchH
Confidence 999997421 158999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchH-HHHhhcCCcEEecCC
Q 029425 126 TVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRF-ILCQPFNIRVFIGFG 192 (193)
Q Consensus 126 ~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~-~~~~~~G~~~~~~~~ 192 (193)
++|+++.....+++|++++|.|+ |.+|++++|+|+.+|++|++++.++++. +.++++|+++++|++
T Consensus 170 ta~~al~~~~~~~~g~~VlV~G~-G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~ 236 (360)
T PLN02586 170 TVYSPMKYYGMTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFLVST 236 (360)
T ss_pred HHHHHHHHhcccCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcEEEcCC
Confidence 99999876677789999999886 9999999999999999998888777664 555789999999865
No 17
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=100.00 E-value=9.5e-34 Score=230.50 Aligned_cols=187 Identities=27% Similarity=0.331 Sum_probs=169.6
Q ss_pred CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425 1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK 80 (193)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~ 80 (193)
|||+++...+.+ +++++.+.|.+.++||+||+.++++|++|++.+.|..+ ..+|.++|||++|+|+++|+++..++
T Consensus 3 ~ka~~~~~~~~~--~~~~~~~~p~~~~~evlVkv~~~gi~~sD~~~~~g~~~--~~~p~i~G~e~~G~V~~vG~~v~~~~ 78 (365)
T cd08277 3 CKAAVAWEAGKP--LVIEEIEVAPPKANEVRIKMLATSVCHTDILAIEGFKA--TLFPVILGHEGAGIVESVGEGVTNLK 78 (365)
T ss_pred cEEEEEccCCCC--cEEEEEECCCCCCCEEEEEEEEEeechhhHHHhcCCCC--CCCCeecccceeEEEEeeCCCCccCC
Confidence 789999876644 88999999999999999999999999999999888654 34689999999999999999999999
Q ss_pred CCCEEEEEc-----------------------------------------------cCceeeeEEeecCCceEECCCCCC
Q 029425 81 VGDQVCALL-----------------------------------------------GGGGYAEKVAVPAGQVLPVPSGVS 113 (193)
Q Consensus 81 ~G~~V~~~~-----------------------------------------------~~g~~~~~~~~~~~~~~~~p~~~~ 113 (193)
+||+|+... ..|+|++|+.++.+.++++|++++
T Consensus 79 ~GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~ae~~~v~~~~~~~lP~~l~ 158 (365)
T cd08277 79 PGDKVIPLFIGQCGECSNCRSGKTNLCQKYRANESGLMPDGTSRFTCKGKKIYHFLGTSTFSQYTVVDENYVAKIDPAAP 158 (365)
T ss_pred CCCEEEECCCCCCCCCchhcCcCcccCcCccccccccccCCccccccCCcccccccccccceeeEEEchhheEECCCCCC
Confidence 999998742 137899999999999999999999
Q ss_pred HHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425 114 LKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQPFNIRVFIGFG 192 (193)
Q Consensus 114 ~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~~~G~~~~~~~~ 192 (193)
+++++.+..++.++|+++....++++|++++|+|+ |.+|++++|+++.+|+ +|+++++++++++.++++|+++++|++
T Consensus 159 ~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~ga~~~i~~~ 237 (365)
T cd08277 159 LEHVCLLGCGFSTGYGAAWNTAKVEPGSTVAVFGL-GAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGATDFINPK 237 (365)
T ss_pred HHHhhHhcchhHHHHHHHHhhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCcEeccc
Confidence 99999998899999998877888999999999986 9999999999999999 799999999999999999999999874
No 18
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=100.00 E-value=1.9e-33 Score=224.52 Aligned_cols=191 Identities=23% Similarity=0.365 Sum_probs=173.7
Q ss_pred CEEEEEcCCCCC-CceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCC
Q 029425 1 MKAIVITQPGSP-EVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRW 79 (193)
Q Consensus 1 m~a~~~~~~~~~-~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~ 79 (193)
|||+++.+++.| ..+++.+.+.|.+.++|++||+.++++|+.|+..+.|.++.....|.++|||++|+|+++|+++.++
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~p~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~ 80 (324)
T cd08292 1 MRAAVHTQFGDPADVLEIGEVPKPTPGAGEVLVRTTLSPIHNHDLWTIRGTYGYKPELPAIGGSEAVGVVDAVGEGVKGL 80 (324)
T ss_pred CeeEEEccCCChhHeEEEeecCCCCCCCCeEEEEEEEccCCHHHHHHhcCcCCCCCCCCCCCCcceEEEEEEeCCCCCCC
Confidence 899999987665 3588899999999999999999999999999998888765333458899999999999999999999
Q ss_pred CCCCEEEEEccCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHH
Q 029425 80 KVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQM 159 (193)
Q Consensus 80 ~~G~~V~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~ 159 (193)
++||+|.++...|+|++|+.+++..++++|+++++++++.++..+.++|+++ ...+++++++++|+|++|.+|++++|+
T Consensus 81 ~~Gd~V~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~~-~~~~~~~g~~vlI~g~~g~ig~~~~~~ 159 (324)
T cd08292 81 QVGQRVAVAPVHGTWAEYFVAPADGLVPLPDGISDEVAAQLIAMPLSALMLL-DFLGVKPGQWLIQNAAGGAVGKLVAML 159 (324)
T ss_pred CCCCEEEeccCCCcceeEEEEchHHeEECCCCCCHHHhhhccccHHHHHHHH-HhhCCCCCCEEEEcccccHHHHHHHHH
Confidence 9999999986579999999999999999999999999999888899999988 558899999999999999999999999
Q ss_pred HHHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425 160 GKCQGVRVFVTAGLATRFILCQPFNIRVFIGFG 192 (193)
Q Consensus 160 ~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~ 192 (193)
|+++|++++++++++++.+.++++|++++++++
T Consensus 160 a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~ 192 (324)
T cd08292 160 AAARGINVINLVRRDAGVAELRALGIGPVVSTE 192 (324)
T ss_pred HHHCCCeEEEEecCHHHHHHHHhcCCCEEEcCC
Confidence 999999999999999999999989999988875
No 19
>PLN02827 Alcohol dehydrogenase-like
Probab=100.00 E-value=1.9e-33 Score=229.71 Aligned_cols=185 Identities=22% Similarity=0.257 Sum_probs=165.1
Q ss_pred CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425 1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK 80 (193)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~ 80 (193)
|||+++.++++ .+++++.+.|.|+++||+|||.++++|++|+..+.+.. .+|.++|||++|+|+++|+++.+|+
T Consensus 13 mka~~~~~~~~--~~~~~e~~~P~~~~~eVlVkv~~~gic~sD~~~~~g~~----~~p~i~GhE~~G~V~~vG~~v~~~~ 86 (378)
T PLN02827 13 CRAAVAWGAGE--ALVMEEVEVSPPQPLEIRIKVVSTSLCRSDLSAWESQA----LFPRIFGHEASGIVESIGEGVTEFE 86 (378)
T ss_pred eEEEEEecCCC--CceEEEeecCCCCCCEEEEEEEEEecChhHHHHhcCCC----CCCeeecccceEEEEEcCCCCcccC
Confidence 89999987653 38889999999999999999999999999998887642 2478999999999999999999999
Q ss_pred CCCEEEEEcc------------------------------------------------CceeeeEEeecCCceEECCCCC
Q 029425 81 VGDQVCALLG------------------------------------------------GGGYAEKVAVPAGQVLPVPSGV 112 (193)
Q Consensus 81 ~G~~V~~~~~------------------------------------------------~g~~~~~~~~~~~~~~~~p~~~ 112 (193)
+||+|+.... +|+|++|+.++++.++++|+++
T Consensus 87 ~GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~G~~aeyv~v~~~~~~~iP~~l 166 (378)
T PLN02827 87 KGDHVLTVFTGECGSCRHCISGKSNMCQVLGLERKGVMHSDQKTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVDPLA 166 (378)
T ss_pred CCCEEEEecCCCCCCChhhhCcCcccccCccccccccccCCCcccccccCcccccccccccceeeEEechhheEECCCCC
Confidence 9999987531 2789999999999999999999
Q ss_pred CHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCE-EEEEeCCcchHHHHhhcCCcEEecC
Q 029425 113 SLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVR-VFVTAGLATRFILCQPFNIRVFIGF 191 (193)
Q Consensus 113 ~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~-v~~~~~~~~~~~~~~~~G~~~~~~~ 191 (193)
++++++.+..++.++|+++....++++|++++|+|+ |.+|++++|+++++|++ |+++++++++.+.++++|+++++|+
T Consensus 167 ~~~~aa~l~~~~~~a~~~~~~~~~~~~g~~VlV~G~-G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~lGa~~~i~~ 245 (378)
T PLN02827 167 PLHKICLLSCGVAAGLGAAWNVADVSKGSSVVIFGL-GTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGVTDFINP 245 (378)
T ss_pred CHHHhhhhcchhHhhHHHHHhhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEcc
Confidence 999998888888899987766788999999999996 99999999999999994 7777789999999999999999987
Q ss_pred C
Q 029425 192 G 192 (193)
Q Consensus 192 ~ 192 (193)
+
T Consensus 246 ~ 246 (378)
T PLN02827 246 N 246 (378)
T ss_pred c
Confidence 5
No 20
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=100.00 E-value=2.5e-33 Score=226.26 Aligned_cols=183 Identities=18% Similarity=0.216 Sum_probs=156.5
Q ss_pred CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhc-CCCCC-CCCCCCCCCcceEEEEEEecCCCCC
Q 029425 1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRK-GSYPP-PKGASPYPGLECSGTILSVGKNVSR 78 (193)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~-~~~~~-~~~~p~~lg~e~~G~V~~vG~~~~~ 78 (193)
|+++++..+++ +++++.+.| ++++||+|||.++++|++|++.+. +.+.. ..++|.++|||++|+|+++ ++.+
T Consensus 5 ~~~~~~~~~~~---~~~~~~~~p-~~~~evlVkv~a~gic~sD~~~~~~g~~~~~~~~~p~v~GhE~~G~V~~v--~v~~ 78 (343)
T PRK09880 5 TQSCVVAGKKD---VAVTEQEIE-WNNNGTLVQITRGGICGSDLHYYQEGKVGNFVIKAPMVLGHEVIGKIVHS--DSSG 78 (343)
T ss_pred ceEEEEecCCc---eEEEecCCC-CCCCeEEEEEEEEEECccccHhhccCCcccccccCCcccCcccEEEEEEe--cCcc
Confidence 67889886554 888998887 689999999999999999998775 33221 2346899999999999999 6788
Q ss_pred CCCCCEEEEEc--------------------------------cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHH
Q 029425 79 WKVGDQVCALL--------------------------------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACT 126 (193)
Q Consensus 79 ~~~G~~V~~~~--------------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~ 126 (193)
|++||+|...+ .+|+|+||+.++++.++++|+++++++++ +..++.+
T Consensus 79 ~~vGdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~~P~~l~~~~aa-~~~~~~~ 157 (343)
T PRK09880 79 LKEGQTVAINPSKPCGHCKYCLSHNENQCTTMRFFGSAMYFPHVDGGFTRYKVVDTAQCIPYPEKADEKVMA-FAEPLAV 157 (343)
T ss_pred CCCCCEEEECCCCCCcCChhhcCCChhhCCCcceeecccccCCCCCceeeeEEechHHeEECCCCCCHHHHH-hhcHHHH
Confidence 99999997421 25999999999999999999999987655 5577889
Q ss_pred HHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425 127 VWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQPFNIRVFIGFG 192 (193)
Q Consensus 127 a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~~~G~~~~~~~~ 192 (193)
+|+++. .....++++++|+|+ |.+|++++|+++.+|+ +|+++++++++++.++++|+++++|++
T Consensus 158 a~~al~-~~~~~~g~~VlV~G~-G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~ 222 (343)
T PRK09880 158 AIHAAH-QAGDLQGKRVFVSGV-GPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQ 222 (343)
T ss_pred HHHHHH-hcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCC
Confidence 999984 445568999999997 9999999999999999 689999999999999999999999875
No 21
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=100.00 E-value=3.6e-33 Score=211.85 Aligned_cols=189 Identities=28% Similarity=0.446 Sum_probs=176.4
Q ss_pred EEEEEcCCCCC-CceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425 2 KAIVITQPGSP-EVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK 80 (193)
Q Consensus 2 ~a~~~~~~~~~-~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~ 80 (193)
|+++....++| ..+++.+.++|+...++|+|++.++.|||+|+..++|.|+....+|.+-|.|++|.|+.+|+++..|+
T Consensus 21 kalvY~~hgdP~kVlql~~~~~p~~~~s~v~Vk~LAaPINPsDIN~IQGvYpvrP~~PAVgGnEGv~eVv~vGs~vkgfk 100 (354)
T KOG0025|consen 21 KALVYSEHGDPAKVLQLKNLELPAVPGSDVLVKMLAAPINPSDINQIQGVYPVRPELPAVGGNEGVGEVVAVGSNVKGFK 100 (354)
T ss_pred ceeeecccCCchhhheeecccCCCCCCCceeeeeeecCCChHHhhhhccccCCCCCCCcccCCcceEEEEEecCCcCccC
Confidence 78899999987 57889999999988888999999999999999999999999989999999999999999999999999
Q ss_pred CCCEEEEEccC-ceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHH
Q 029425 81 VGDQVCALLGG-GGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQM 159 (193)
Q Consensus 81 ~G~~V~~~~~~-g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~ 159 (193)
+||.|+....+ |.|++|...+++.++++++.+++++||++....+|||..|....++++||+|+-.||++.+|++++|+
T Consensus 101 ~Gd~VIp~~a~lGtW~t~~v~~e~~Li~vd~~~pl~~AAT~~VNP~TAyrmL~dfv~L~~GD~vIQNganS~VG~~ViQl 180 (354)
T KOG0025|consen 101 PGDWVIPLSANLGTWRTEAVFSESDLIKVDKDIPLASAATLSVNPCTAYRMLKDFVQLNKGDSVIQNGANSGVGQAVIQL 180 (354)
T ss_pred CCCeEeecCCCCccceeeEeecccceEEcCCcCChhhhheeccCchHHHHHHHHHHhcCCCCeeeecCcccHHHHHHHHH
Confidence 99999987654 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHCCCEEEEEeCCcchHHHH----hhcCCcEEec
Q 029425 160 GKCQGVRVFVTAGLATRFILC----QPFNIRVFIG 190 (193)
Q Consensus 160 ~~~~g~~v~~~~~~~~~~~~~----~~~G~~~~~~ 190 (193)
|+++|++.+.++|+....+.+ +.+||++||.
T Consensus 181 aka~GiktinvVRdR~~ieel~~~Lk~lGA~~ViT 215 (354)
T KOG0025|consen 181 AKALGIKTINVVRDRPNIEELKKQLKSLGATEVIT 215 (354)
T ss_pred HHHhCcceEEEeecCccHHHHHHHHHHcCCceEec
Confidence 999999999999987766554 5689999984
No 22
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=100.00 E-value=1.3e-32 Score=224.56 Aligned_cols=189 Identities=24% Similarity=0.326 Sum_probs=162.3
Q ss_pred EEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCCC
Q 029425 2 KAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKV 81 (193)
Q Consensus 2 ~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~~ 81 (193)
||+.+...+.+..++..+.+.|.|+++||+|||.++++|++|++.+.|.+.. ..+|.++|||++|+|+++|+++.+|++
T Consensus 6 ~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~gic~sD~~~~~G~~~~-~~~p~i~GhE~aG~Vv~vG~~v~~~~v 84 (375)
T PLN02178 6 KAFGWAANDESGVLSPFHFSRRENGENDVTVKILFCGVCHSDLHTIKNHWGF-SRYPIIPGHEIVGIATKVGKNVTKFKE 84 (375)
T ss_pred eeEEEEEccCCCCceEEeecCCCCCCCeEEEEEEEEcCchHHHHHhcCCCCC-CCCCcccCceeeEEEEEECCCCCccCC
Confidence 5556565555556888888889999999999999999999999998876532 235889999999999999999999999
Q ss_pred CCEEEEE-----c------------------------------cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHH
Q 029425 82 GDQVCAL-----L------------------------------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACT 126 (193)
Q Consensus 82 G~~V~~~-----~------------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~ 126 (193)
||+|... + .+|+|++|+.++++.++++|++++++++++++....+
T Consensus 85 GdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~lP~~ls~~~aa~l~~~~~t 164 (375)
T PLN02178 85 GDRVGVGVIIGSCQSCESCNQDLENYCPKVVFTYNSRSSDGTRNQGGYSDVIVVDHRFVLSIPDGLPSDSGAPLLCAGIT 164 (375)
T ss_pred CCEEEEcCccCCCCCChhHhCcchhcCCCccccccccccCCCcCCCccccEEEEchHHeEECCCCCCHHHcchhhccchH
Confidence 9999742 1 1589999999999999999999999999999999999
Q ss_pred HHHHHHHhcC-CCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcch-HHHHhhcCCcEEecCC
Q 029425 127 VWSTVFMTSH-LSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATR-FILCQPFNIRVFIGFG 192 (193)
Q Consensus 127 a~~~l~~~~~-~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~-~~~~~~~G~~~~~~~~ 192 (193)
+|+++..... .+++++++|.|+ |.+|++++|+|+.+|++|++++.++++ .+.++++|+++++|++
T Consensus 165 a~~al~~~~~~~~~g~~VlV~G~-G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~lGa~~~i~~~ 231 (375)
T PLN02178 165 VYSPMKYYGMTKESGKRLGVNGL-GGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRLGADSFLVTT 231 (375)
T ss_pred HHHHHHHhCCCCCCCCEEEEEcc-cHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHhCCCcEEEcCc
Confidence 9998855443 368999999987 999999999999999999998877554 6788899999999875
No 23
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=100.00 E-value=9.6e-33 Score=221.74 Aligned_cols=190 Identities=26% Similarity=0.402 Sum_probs=172.8
Q ss_pred EEEEEcCC---CCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCC
Q 029425 2 KAIVITQP---GSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSR 78 (193)
Q Consensus 2 ~a~~~~~~---~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~ 78 (193)
||+++.++ +.++.++..+.+.|+++++||+||+.++++|+.|...+.+..+. ..+|.++|+|++|+|+++|+++..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ev~Ikv~~~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~V~~vG~~v~~ 79 (336)
T TIGR02817 1 KAVGYKKPLPITDPDALVDIDLPKPKPGGRDLLVEVKAISVNPVDTKVRARMAPE-AGQPKILGWDAAGVVVAVGDEVTL 79 (336)
T ss_pred CceeeccccCCCCcccceecccCCCCCCCCEEEEEEEEEEcChHHHHHHcCCCCC-CCCCcccceeeEEEEEEeCCCCCC
Confidence 57888887 77888999999999999999999999999999999888776542 235789999999999999999999
Q ss_pred CCCCCEEEEEc---cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCC-----CCeEEEEcCCc
Q 029425 79 WKVGDQVCALL---GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSP-----GESFLVHGGSS 150 (193)
Q Consensus 79 ~~~G~~V~~~~---~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~-----~~~vli~ga~g 150 (193)
|++||+|+++. ..|+|++|+.++.+.++++|+++++++++.++.++++||+++....++++ +++++|+|++|
T Consensus 80 ~~~Gd~V~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~ga~g 159 (336)
T TIGR02817 80 FKPGDEVWYAGDIDRPGSNAEFHLVDERIVGHKPKSLSFAEAAALPLTSITAWELLFDRLGINDPVAGDKRALLIIGGAG 159 (336)
T ss_pred CCCCCEEEEcCCCCCCCcccceEEEcHHHcccCCCCCCHHHHhhhhHHHHHHHHHHHHhcCCCCCCCCCCCEEEEEcCCc
Confidence 99999999874 25899999999999999999999999999999999999999988888877 99999999999
Q ss_pred hHHHHHHHHHHHC-CCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425 151 GIGTFAIQMGKCQ-GVRVFVTAGLATRFILCQPFNIRVFIGFG 192 (193)
Q Consensus 151 ~~G~~~i~~~~~~-g~~v~~~~~~~~~~~~~~~~G~~~~~~~~ 192 (193)
.+|++++|+|+.+ |++|+.+++++++.++++++|+++++|++
T Consensus 160 ~vg~~~~~~ak~~~G~~vi~~~~~~~~~~~l~~~g~~~~~~~~ 202 (336)
T TIGR02817 160 GVGSILIQLARQLTGLTVIATASRPESQEWVLELGAHHVIDHS 202 (336)
T ss_pred HHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHHHcCCCEEEECC
Confidence 9999999999998 99999999999999999999999999854
No 24
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.5e-33 Score=214.28 Aligned_cols=189 Identities=26% Similarity=0.333 Sum_probs=175.2
Q ss_pred CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425 1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK 80 (193)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~ 80 (193)
+||.+..++++| |.++|++.++|+.+||+||+.++++|++|...+.|..+ ...+|.++|||++|+|+.+|.++.+++
T Consensus 8 CKAAV~w~a~~P--L~IEei~V~pPka~EVRIKI~~t~vCHTD~~~~~g~~~-~~~fP~IlGHEaaGIVESvGegV~~vk 84 (375)
T KOG0022|consen 8 CKAAVAWEAGKP--LVIEEIEVAPPKAHEVRIKILATGVCHTDAYVWSGKDP-EGLFPVILGHEAAGIVESVGEGVTTVK 84 (375)
T ss_pred EeEeeeccCCCC--eeEEEEEeCCCCCceEEEEEEEEeeccccceeecCCCc-cccCceEecccceeEEEEecCCccccC
Confidence 589999999988 99999999999999999999999999999999999874 345799999999999999999999999
Q ss_pred CCCEEEEEc-------------------------------------------------cCceeeeEEeecCCceEECCCC
Q 029425 81 VGDQVCALL-------------------------------------------------GGGGYAEKVAVPAGQVLPVPSG 111 (193)
Q Consensus 81 ~G~~V~~~~-------------------------------------------------~~g~~~~~~~~~~~~~~~~p~~ 111 (193)
+||+|+.+. .-.+|+||-+++...+.++++.
T Consensus 85 ~GD~Viplf~p~CgeCk~C~s~ktNlC~~~~~~~~~~~~~~DgtSRF~~~gk~iyHfmg~StFsEYTVv~~~~v~kId~~ 164 (375)
T KOG0022|consen 85 PGDHVIPLFTPQCGECKFCKSPKTNLCEKFRADNGKGGMPYDGTSRFTCKGKPIYHFMGTSTFSEYTVVDDISVAKIDPS 164 (375)
T ss_pred CCCEEeeccccCCCCcccccCCCCChhhhhcccccccccccCCceeeeeCCCceEEecccccceeEEEeecceeEecCCC
Confidence 999998532 0148999999999999999999
Q ss_pred CCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHhhcCCcEEec
Q 029425 112 VSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQPFNIRVFIG 190 (193)
Q Consensus 112 ~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~~~G~~~~~~ 190 (193)
..++.++.+.+...|.|-|....+++++|+++.|.|- |.+|+++++-+|+.|| ++|.++-+++|.+.++++|+..++|
T Consensus 165 aPl~kvcLLgCGvsTG~GAa~~~Akv~~GstvAVfGL-G~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe~iN 243 (375)
T KOG0022|consen 165 APLEKVCLLGCGVSTGYGAAWNTAKVEPGSTVAVFGL-GGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATEFIN 243 (375)
T ss_pred CChhheeEeeccccccchhhhhhcccCCCCEEEEEec-chHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcceecC
Confidence 9999999999999999998888999999999999996 9999999999999998 8999999999999999999999999
Q ss_pred CCC
Q 029425 191 FGY 193 (193)
Q Consensus 191 ~~~ 193 (193)
++|
T Consensus 244 p~d 246 (375)
T KOG0022|consen 244 PKD 246 (375)
T ss_pred hhh
Confidence 864
No 25
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=100.00 E-value=1.5e-32 Score=222.61 Aligned_cols=185 Identities=20% Similarity=0.236 Sum_probs=153.7
Q ss_pred CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCC--CCCCCCCCcceEEEEEEecCCCCC
Q 029425 1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPP--KGASPYPGLECSGTILSVGKNVSR 78 (193)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~--~~~p~~lg~e~~G~V~~vG~~~~~ 78 (193)
|||++++..+ ++ +++++.+.|+|+++||+|||.++++|++|++.+.|.++.. ...|.++|||++|+|+++|++ ..
T Consensus 1 mka~~~~~~~-~~-l~~~~~p~p~~~~~evlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~i~G~e~~G~V~~vG~~-~~ 77 (355)
T cd08230 1 MKAIAVKPGK-PG-VRVVDIPEPEPTPGEVLVRTLEVGVCGTDREIVAGEYGTAPPGEDFLVLGHEALGVVEEVGDG-SG 77 (355)
T ss_pred CceeEecCCC-CC-CeEEeCCCCCCCCCeEEEEEEEEEeccccHHHHcCCCCCCCCCCCCeeeccccceEEEEecCC-CC
Confidence 8999998543 34 8999999999999999999999999999999998875432 235789999999999999999 99
Q ss_pred CCCCCEEEEEc------------------------------cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHH
Q 029425 79 WKVGDQVCALL------------------------------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVW 128 (193)
Q Consensus 79 ~~~G~~V~~~~------------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~ 128 (193)
|++||+|+..+ .+|+|++|+.++++.++++|++++ +++++..+..+++
T Consensus 78 ~~vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~g~~~~~G~~aey~~~~~~~~~~~P~~~~--~~a~~~~p~~~~~ 155 (355)
T cd08230 78 LSPGDLVVPTVRRPPGKCLNCRIGRPDFCETGEYTERGIKGLHGFMREYFVDDPEYLVKVPPSLA--DVGVLLEPLSVVE 155 (355)
T ss_pred CCCCCEEEeccccCCCcChhhhCcCcccCCCcceeccCcCCCCccceeEEEeccccEEECCCCCC--cceeecchHHHHH
Confidence 99999998642 248899999999999999999998 4444555665555
Q ss_pred HHHHH------hcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEecCC
Q 029425 129 STVFM------TSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFIGFG 192 (193)
Q Consensus 129 ~~l~~------~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~~~~ 192 (193)
.++.. ..+.+++++++|+|+ |.+|++++|+|+.+|++|+++++ +++|++.++++|++. ++++
T Consensus 156 ~a~~~~~~~~~~~~~~~g~~vlI~G~-G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~-v~~~ 226 (355)
T cd08230 156 KAIEQAEAVQKRLPTWNPRRALVLGA-GPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATY-VNSS 226 (355)
T ss_pred HHHHHHhhhhhhcccCCCCEEEEECC-CHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE-ecCC
Confidence 44422 223578999999996 99999999999999999999987 678999999999986 4553
No 26
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=100.00 E-value=2.7e-32 Score=223.78 Aligned_cols=182 Identities=22% Similarity=0.372 Sum_probs=153.9
Q ss_pred CEEEEEcCCCCCCceEEEeecCCCCC-------CCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEec
Q 029425 1 MKAIVITQPGSPEVLQLQEVEDPQIK-------DDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVG 73 (193)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~-------~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG 73 (193)
|||+++..++. +++++.+.|.|+ ++||+|||+++++|++|++.+.|.++. .+|.++|||++|+|+++|
T Consensus 3 mka~v~~~~~~---~~~~e~~~P~~~~~~~~~~~~eVlVkv~a~gIcgsD~~~~~g~~~~--~~p~i~GhE~~G~V~~vG 77 (393)
T TIGR02819 3 NRGVVYLGPGK---VEVQDIDYPKLELPDGRKCEHGVILKVVTTNICGSDQHMVRGRTTA--PTGLVLGHEITGEVIEKG 77 (393)
T ss_pred ceEEEEecCCc---eeEEeccCCcccCCCccCCCCeEEEEEEEeeecHHHHHHHCCCCCC--CCCccccceeEEEEEEEc
Confidence 89999987664 888999988874 689999999999999999998876532 368999999999999999
Q ss_pred CCCCCCCCCCEEEEEc-------------------------------------cCceeeeEEeecCC--ceEECCCCCCH
Q 029425 74 KNVSRWKVGDQVCALL-------------------------------------GGGGYAEKVAVPAG--QVLPVPSGVSL 114 (193)
Q Consensus 74 ~~~~~~~~G~~V~~~~-------------------------------------~~g~~~~~~~~~~~--~~~~~p~~~~~ 114 (193)
+++..|++||+|+..+ .+|+|+||+.+++. .++++|++++.
T Consensus 78 ~~V~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~~~~~~~G~~aey~~v~~~~~~l~~vP~~~~~ 157 (393)
T TIGR02819 78 RDVEFIKIGDIVSVPFNIACGRCRNCKEGHTGVCLNVNPARAGAAYGYVDMGGWVGGQSEYVMVPYADFNLLKFPDRDQA 157 (393)
T ss_pred CccccccCCCEEEEecccCCCCChHHHCcCcccCcCCCCCCccceecccccCCCCCceEEEEEechhhCceEECCCcccc
Confidence 9999999999996521 24899999999964 69999998653
Q ss_pred ----HhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEE-EeCCcchHHHHhhcCCcEEe
Q 029425 115 ----KDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFV-TAGLATRFILCQPFNIRVFI 189 (193)
Q Consensus 115 ----~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~-~~~~~~~~~~~~~~G~~~~~ 189 (193)
.+++++..++.++|+++. ..+++++++++|.|+ |.+|++++|+|+.+|+++++ +++++++++.++++|++.++
T Consensus 158 ~~~~~~~a~l~~~~~ta~~a~~-~~~~~~g~~VlV~G~-G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~Ga~~v~ 235 (393)
T TIGR02819 158 LEKIRDLTMLSDIFPTGYHGAV-TAGVGPGSTVYIAGA-GPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSFGCETVD 235 (393)
T ss_pred cccccceeeeccHHHHHHHHHH-hcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHcCCeEEe
Confidence 346677888999999984 578999999999775 99999999999999997554 55678899999999997543
No 27
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=100.00 E-value=7.1e-32 Score=216.89 Aligned_cols=187 Identities=33% Similarity=0.510 Sum_probs=168.4
Q ss_pred CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425 1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK 80 (193)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~ 80 (193)
|||+++++++.+ +++++.+.|++.++||+||+.++++|++|+..+.|..+. ..+|.++|||++|+|+++|+++.+++
T Consensus 1 m~a~~~~~~~~~--~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~-~~~p~~~g~e~~G~v~~vG~~v~~~~ 77 (333)
T cd08296 1 YKAVQVTEPGGP--LELVERDVPLPGPGEVLIKVEACGVCHSDAFVKEGAMPG-LSYPRVPGHEVVGRIDAVGEGVSRWK 77 (333)
T ss_pred CeEEEEccCCCC--ceEEeccCCCCCCCEEEEEEEEEecchHHHHHHhCCCCC-CCCCcccCcceeEEEEEECCCCccCC
Confidence 899999987543 888899999999999999999999999999988886543 23578999999999999999999999
Q ss_pred CCCEEEEE----------------------------ccCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHH
Q 029425 81 VGDQVCAL----------------------------LGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVF 132 (193)
Q Consensus 81 ~G~~V~~~----------------------------~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~ 132 (193)
+||+|+.. ..+|++++|+.++.+.++++|+++++.+++.++.++.++|+++.
T Consensus 78 ~Gd~V~~~~~~~~~~~~~~~~~g~~~~c~~~~~~~~~~~g~~a~~~~v~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~~~ 157 (333)
T cd08296 78 VGDRVGVGWHGGHCGTCDACRRGDFVHCENGKVTGVTRDGGYAEYMLAPAEALARIPDDLDAAEAAPLLCAGVTTFNALR 157 (333)
T ss_pred CCCEEEeccccCCCCCChhhhCcCcccCCCCCccCcccCCcceeEEEEchhheEeCCCCCCHHHhhhhhhhhHHHHHHHH
Confidence 99999762 22588999999999999999999999999999999999999985
Q ss_pred HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425 133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFG 192 (193)
Q Consensus 133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~ 192 (193)
. .+++++++++|+| +|.+|++++++++++|++|+.+++++++.+.++++|+++++|++
T Consensus 158 ~-~~~~~~~~vlV~g-~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~ 215 (333)
T cd08296 158 N-SGAKPGDLVAVQG-IGGLGHLAVQYAAKMGFRTVAISRGSDKADLARKLGAHHYIDTS 215 (333)
T ss_pred h-cCCCCCCEEEEEC-CcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcCCcEEecCC
Confidence 4 4899999999999 69999999999999999999999999999999999999999875
No 28
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=100.00 E-value=4.5e-32 Score=218.33 Aligned_cols=192 Identities=30% Similarity=0.415 Sum_probs=172.4
Q ss_pred CEEEEEcCCCCC-CceEEEeecCCCCCC-CeEEEEEeEecCChhhhhhhcCCCCCCCC----CCCCCCcceEEEEEEecC
Q 029425 1 MKAIVITQPGSP-EVLQLQEVEDPQIKD-DEVLIKVEATALNRADTLQRKGSYPPPKG----ASPYPGLECSGTILSVGK 74 (193)
Q Consensus 1 m~a~~~~~~~~~-~~~~~~~~~~~~~~~-~evlV~v~~~~v~~~d~~~~~~~~~~~~~----~p~~lg~e~~G~V~~vG~ 74 (193)
|||+++.+++.+ +.+.+++.+.|+|.+ ++++||+.++++|+.|...+.+..+.... .|.++|||++|+|+++|+
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~v~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~g~e~~G~V~~vG~ 80 (341)
T cd08290 1 AKALVYTEHGEPKEVLQLESYEIPPPGPPNEVLVKMLAAPINPADINQIQGVYPIKPPTTPEPPAVGGNEGVGEVVKVGS 80 (341)
T ss_pred CceEEEccCCCchhheEEeecCCCCCCCCCEEEEEEEecCCCHHHHHHhcCcCCCCCcccCCCCCCCCcceEEEEEEeCC
Confidence 999999988765 368889999888887 99999999999999999988887643222 577899999999999999
Q ss_pred CCCCCCCCCEEEEEc-cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHH
Q 029425 75 NVSRWKVGDQVCALL-GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIG 153 (193)
Q Consensus 75 ~~~~~~~G~~V~~~~-~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G 153 (193)
++..|++||+|++.. ..|+|++|+.++.+.++++|+++++++++.++.++.++|+++.....++++++++|+|++|.+|
T Consensus 81 ~v~~~~~Gd~V~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~vg 160 (341)
T cd08290 81 GVKSLKPGDWVIPLRPGLGTWRTHAVVPADDLIKVPNDVDPEQAATLSVNPCTAYRLLEDFVKLQPGDWVIQNGANSAVG 160 (341)
T ss_pred CCCCCCCCCEEEecCCCCccchheEeccHHHeEeCCCCCCHHHHHHhhccHHHHHHHHHhhcccCCCCEEEEccchhHHH
Confidence 999999999999875 3689999999999999999999999999999999999999997778899999999999999999
Q ss_pred HHHHHHHHHCCCEEEEEeCCc----chHHHHhhcCCcEEecCC
Q 029425 154 TFAIQMGKCQGVRVFVTAGLA----TRFILCQPFNIRVFIGFG 192 (193)
Q Consensus 154 ~~~i~~~~~~g~~v~~~~~~~----~~~~~~~~~G~~~~~~~~ 192 (193)
++++++|+++|++++++++++ ++.++++++|++++++++
T Consensus 161 ~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 203 (341)
T cd08290 161 QAVIQLAKLLGIKTINVVRDRPDLEELKERLKALGADHVLTEE 203 (341)
T ss_pred HHHHHHHHHcCCeEEEEEcCCCcchhHHHHHHhcCCCEEEeCc
Confidence 999999999999999998876 668888899999998865
No 29
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=100.00 E-value=1.3e-31 Score=214.51 Aligned_cols=192 Identities=40% Similarity=0.694 Sum_probs=175.3
Q ss_pred CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425 1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK 80 (193)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~ 80 (193)
|||+++..++.+..+++++.+.|++.++|++||+.++++|+.|.....+.++.....|.++|+|++|+|+++|+++..++
T Consensus 2 m~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vG~~v~~~~ 81 (334)
T PTZ00354 2 MRAVTLKGFGGVDVLKIGESPKPAPKRNDVLIKVSAAGVNRADTLQRQGKYPPPPGSSEILGLEVAGYVEDVGSDVKRFK 81 (334)
T ss_pred cEEEEEEecCCCcceEEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccceeeEEEEEEeCCCCCCCC
Confidence 89999999887767888888888899999999999999999999888876654444567899999999999999999999
Q ss_pred CCCEEEEEccCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHH
Q 029425 81 VGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMG 160 (193)
Q Consensus 81 ~G~~V~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~ 160 (193)
+||+|+++..+|++++|+.++.+.++++|+++++.+++.++.++.++|+++.....++++++++|+|++|.+|+++++++
T Consensus 82 ~Gd~V~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~vlI~ga~g~~g~~~~~~a 161 (334)
T PTZ00354 82 EGDRVMALLPGGGYAEYAVAHKGHVMHIPQGYTFEEAAAIPEAFLTAWQLLKKHGDVKKGQSVLIHAGASGVGTAAAQLA 161 (334)
T ss_pred CCCEEEEecCCCceeeEEEecHHHcEeCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHH
Confidence 99999998667999999999999999999999999999999999999999977788999999999999999999999999
Q ss_pred HHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425 161 KCQGVRVFVTAGLATRFILCQPFNIRVFIGFG 192 (193)
Q Consensus 161 ~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~ 192 (193)
+++|++++++++++++.++++++|++.++++.
T Consensus 162 ~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~ 193 (334)
T PTZ00354 162 EKYGAATIITTSSEEKVDFCKKLAAIILIRYP 193 (334)
T ss_pred HHcCCEEEEEeCCHHHHHHHHHcCCcEEEecC
Confidence 99999988899999999999999999888764
No 30
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=100.00 E-value=8.4e-32 Score=218.51 Aligned_cols=188 Identities=22% Similarity=0.274 Sum_probs=164.5
Q ss_pred CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425 1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK 80 (193)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~ 80 (193)
++|+++..++.+ +++++++.|.++++||+||+.++++|++|+..+.+.++. ..+|.++|||++|+|+++|+++.+|+
T Consensus 10 ~~~~~~~~~~~~--~~~~~~~~p~~~~~eVlVrv~a~gi~~~D~~~~~g~~~~-~~~p~i~G~E~~G~Vv~vG~~v~~~~ 86 (357)
T PLN02514 10 TTGWAARDPSGH--LSPYTYTLRKTGPEDVVIKVIYCGICHTDLHQIKNDLGM-SNYPMVPGHEVVGEVVEVGSDVSKFT 86 (357)
T ss_pred EEEEEEecCCCC--ceEEeecCCCCCCCcEEEEEEEeccChHHHHhhcCCcCc-CCCCccCCceeeEEEEEECCCccccc
Confidence 478888888755 888999999999999999999999999999988876543 23588999999999999999999999
Q ss_pred CCCEEEEE-----------------------------------ccCceeeeEEeecCCceEECCCCCCHHhHccCcchHH
Q 029425 81 VGDQVCAL-----------------------------------LGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVAC 125 (193)
Q Consensus 81 ~G~~V~~~-----------------------------------~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ 125 (193)
+||+|+.. ..+|+|++|+.++.+.++++|++++++++++++.++.
T Consensus 87 ~Gd~V~~~~~~~~c~~C~~c~~g~~~~c~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ 166 (357)
T PLN02514 87 VGDIVGVGVIVGCCGECSPCKSDLEQYCNKRIWSYNDVYTDGKPTQGGFASAMVVDQKFVVKIPEGMAPEQAAPLLCAGV 166 (357)
T ss_pred CCCEEEEcCccccCCCChhHhCCCcccCCCccccccccccCCccCCCccccEEEEchHHeEECCCCCCHHHhhhhhhhHH
Confidence 99999731 1258999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH-hhcCCcEEecCC
Q 029425 126 TVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC-QPFNIRVFIGFG 192 (193)
Q Consensus 126 ~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~-~~~G~~~~~~~~ 192 (193)
++|+++......++|++++|+|+ |.+|++++|+|+++|++++++++++++...+ +++|++.++++.
T Consensus 167 ta~~al~~~~~~~~g~~vlV~G~-G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~ 233 (357)
T PLN02514 167 TVYSPLSHFGLKQSGLRGGILGL-GGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGADDYLVSS 233 (357)
T ss_pred HHHHHHHHcccCCCCCeEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCCcEEecCC
Confidence 99999976666789999999975 9999999999999999999998888777655 569999887754
No 31
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=100.00 E-value=6.6e-32 Score=217.49 Aligned_cols=178 Identities=20% Similarity=0.225 Sum_probs=156.0
Q ss_pred CCceEEEeecC----CCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcce--EEEEEEecCCCCCCCCCCEE
Q 029425 12 PEVLQLQEVED----PQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLEC--SGTILSVGKNVSRWKVGDQV 85 (193)
Q Consensus 12 ~~~~~~~~~~~----~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~--~G~V~~vG~~~~~~~~G~~V 85 (193)
+++|++++.+. |+|+++||||||+++++|+.|+..+.|........|.++|+++ .|.+..+|+++..|++||+|
T Consensus 18 ~~~~~~~~~~~~~~~p~p~~~~vlv~v~~~~inp~d~~~~~g~~~~~~~~p~~~g~~~~g~~~~~~v~~~v~~~~vGd~V 97 (338)
T cd08295 18 ESDLELRTTKLTLKVPPGGSGDVLVKNLYLSCDPYMRGRMKGHDDSLYLPPFKPGEVITGYGVAKVVDSGNPDFKVGDLV 97 (338)
T ss_pred ccceEEEEecCCcCCCCCCCCeEEEEEEEEeeCHHHHHhhccCCccccCCCcCCCCeEeccEEEEEEecCCCCCCCCCEE
Confidence 56799999987 7899999999999999999999988875432224578888754 45666678888899999999
Q ss_pred EEEccCceeeeEEeecC-CceEECC-CCCCHH-hHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHH
Q 029425 86 CALLGGGGYAEKVAVPA-GQVLPVP-SGVSLK-DAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKC 162 (193)
Q Consensus 86 ~~~~~~g~~~~~~~~~~-~~~~~~p-~~~~~~-~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~ 162 (193)
+++ |+|+||+.+++ ..++++| +++++. ++++++++++|||+++.+..++++|++++|+|++|.+|++++|+|+.
T Consensus 98 ~~~---g~~aey~~v~~~~~~~~lp~~~~~~~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~ 174 (338)
T cd08295 98 WGF---TGWEEYSLIPRGQDLRKIDHTDVPLSYYLGLLGMPGLTAYAGFYEVCKPKKGETVFVSAASGAVGQLVGQLAKL 174 (338)
T ss_pred Eec---CCceeEEEecchhceeecCCCCCCHHHHHHhcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHH
Confidence 876 57999999999 7899995 678876 78889999999999998888999999999999999999999999999
Q ss_pred CCCEEEEEeCCcchHHHHhh-cCCcEEecCC
Q 029425 163 QGVRVFVTAGLATRFILCQP-FNIRVFIGFG 192 (193)
Q Consensus 163 ~g~~v~~~~~~~~~~~~~~~-~G~~~~~~~~ 192 (193)
+|++|+.+++++++.+++++ +|+++++||+
T Consensus 175 ~G~~Vi~~~~~~~~~~~~~~~lGa~~vi~~~ 205 (338)
T cd08295 175 KGCYVVGSAGSDEKVDLLKNKLGFDDAFNYK 205 (338)
T ss_pred cCCEEEEEeCCHHHHHHHHHhcCCceeEEcC
Confidence 99999999999999999998 9999999864
No 32
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=100.00 E-value=1.6e-31 Score=216.95 Aligned_cols=187 Identities=29% Similarity=0.462 Sum_probs=167.9
Q ss_pred EEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCC---
Q 029425 2 KAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSR--- 78 (193)
Q Consensus 2 ~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~--- 78 (193)
||+++.++++ .+++++.+.|.|+++||+||+.++++|++|+....|.++. ..+|.++|||++|+|+++|+++..
T Consensus 2 ka~~~~~~~~--~l~~~~~~~p~~~~~evlV~v~a~~l~~~d~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~~~ 78 (361)
T cd08231 2 RAAVLTGPGK--PLEIREVPLPDLEPGAVLVRVRLAGVCGSDVHTVAGRRPR-VPLPIILGHEGVGRVVALGGGVTTDVA 78 (361)
T ss_pred eEEEEcCCCC--CCEEEeccCCCCCCCeEEEEEEEEeecCccHHHhcCCCCC-CCCCcccccCCceEEEEeCCCcccccc
Confidence 7899998873 4889999999999999999999999999999988887652 346889999999999999999876
Q ss_pred ---CCCCCEEEEEc----------------------------------cCceeeeEEeecCC-ceEECCCCCCHHhHccC
Q 029425 79 ---WKVGDQVCALL----------------------------------GGGGYAEKVAVPAG-QVLPVPSGVSLKDAAAF 120 (193)
Q Consensus 79 ---~~~G~~V~~~~----------------------------------~~g~~~~~~~~~~~-~~~~~p~~~~~~~aa~~ 120 (193)
|++||+|+.+. ..|+|++|+.++++ .++++|++++..+++++
T Consensus 79 ~~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~lP~~~~~~~aa~~ 158 (361)
T cd08231 79 GEPLKVGDRVTWSVGAPCGRCYRCLVGDPTKCENRKKYGHEASCDDPHLSGGYAEHIYLPPGTAIVRVPDNVPDEVAAPA 158 (361)
T ss_pred CCccCCCCEEEEcccCCCCCChhHhCcCccccccchhccccccccCCCCCcccceEEEecCCCceEECCCCCCHHHHHHh
Confidence 99999998762 25899999999986 79999999999889888
Q ss_pred cchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425 121 PEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQPFNIRVFIGFG 192 (193)
Q Consensus 121 ~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~~~G~~~~~~~~ 192 (193)
+.++++||+++......++++++||+|+ |.+|++++++|+++|+ +|+++++++++.++++++|++.+++++
T Consensus 159 ~~~~~ta~~al~~~~~~~~g~~vlI~g~-g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~ 230 (361)
T cd08231 159 NCALATVLAALDRAGPVGAGDTVVVQGA-GPLGLYAVAAAKLAGARRVIVIDGSPERLELAREFGADATIDID 230 (361)
T ss_pred cCHHHHHHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCCeEEcCc
Confidence 8999999999977777779999999985 9999999999999999 999999999999999999999998875
No 33
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=100.00 E-value=1.1e-31 Score=216.58 Aligned_cols=179 Identities=16% Similarity=0.187 Sum_probs=152.2
Q ss_pred CCceEEEeecCCCCC-CCeEEEEEeEecCChhhhhhhcCCC--CCCCCCCCCCCcceEEEEEEecCCCCCCCCCCEEEEE
Q 029425 12 PEVLQLQEVEDPQIK-DDEVLIKVEATALNRADTLQRKGSY--PPPKGASPYPGLECSGTILSVGKNVSRWKVGDQVCAL 88 (193)
Q Consensus 12 ~~~~~~~~~~~~~~~-~~evlV~v~~~~v~~~d~~~~~~~~--~~~~~~p~~lg~e~~G~V~~vG~~~~~~~~G~~V~~~ 88 (193)
++.+++++.+.|.|. ++||+|||.++++|+.|+....... .....+|.++|+|++|+|+++|++++.|++||+|+++
T Consensus 20 ~~~~~~~~~~~p~~~~~~evlV~v~a~gin~~d~~~~~~~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~ 99 (345)
T cd08293 20 AENFRVEECTLPDELNEGQVLVRTLYLSVDPYMRCRMNEDTGTDYLAPWQLSQVLDGGGVGVVEESKHQKFAVGDIVTSF 99 (345)
T ss_pred ccceEEEeccCCCCCCCCeEEEEEEEEecCHHHHhhcccccccccCCCccCCCceEeeEEEEEeccCCCCCCCCCEEEec
Confidence 467899999999874 9999999999999999864332111 1112357899999999999999999999999999876
Q ss_pred ccCceeeeEEeecCCceEECCCCCCHH----hHccCcchHHHHHHHHHHhcCCCCC--CeEEEEcCCchHHHHHHHHHHH
Q 029425 89 LGGGGYAEKVAVPAGQVLPVPSGVSLK----DAAAFPEVACTVWSTVFMTSHLSPG--ESFLVHGGSSGIGTFAIQMGKC 162 (193)
Q Consensus 89 ~~~g~~~~~~~~~~~~~~~~p~~~~~~----~aa~~~~~~~~a~~~l~~~~~~~~~--~~vli~ga~g~~G~~~i~~~~~ 162 (193)
. +.|++|+.++++.++++|+++++. ++++++.++.+||+++.+..+++++ ++++|+|++|.+|++++|+|++
T Consensus 100 ~--~~~ae~~~v~~~~~~~iP~~~~~~~~~~~~a~~~~~~~ta~~al~~~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~ 177 (345)
T cd08293 100 N--WPWQTYAVLDGSSLEKVDPQLVDGHLSYFLGAVGLPGLTALIGIQEKGHITPGANQTMVVSGAAGACGSLAGQIGRL 177 (345)
T ss_pred C--CCceeEEEecHHHeEEcCccccccchhHHhhhcCcHHHHHHHHHHHhccCCCCCCCEEEEECCCcHHHHHHHHHHHH
Confidence 3 679999999999999999985332 2456778899999999878888877 9999999999999999999999
Q ss_pred CCC-EEEEEeCCcchHHHHhh-cCCcEEecCC
Q 029425 163 QGV-RVFVTAGLATRFILCQP-FNIRVFIGFG 192 (193)
Q Consensus 163 ~g~-~v~~~~~~~~~~~~~~~-~G~~~~~~~~ 192 (193)
+|+ +|+++++++++.+++++ +|++.+++++
T Consensus 178 ~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~ 209 (345)
T cd08293 178 LGCSRVVGICGSDEKCQLLKSELGFDAAINYK 209 (345)
T ss_pred cCCCEEEEEcCCHHHHHHHHHhcCCcEEEECC
Confidence 999 89999999999999986 9999999875
No 34
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=100.00 E-value=1.4e-31 Score=218.42 Aligned_cols=187 Identities=26% Similarity=0.332 Sum_probs=168.7
Q ss_pred CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425 1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK 80 (193)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~ 80 (193)
||++++..++.+ +++++.+.|.+.++||+||+.++++|++|.+.+.|.+. ..+|.++|||++|+|+++|+++..++
T Consensus 8 ~~a~~~~~~~~~--~~l~~~p~p~~~~~~vlvkv~~~gi~~~D~~~~~g~~~--~~~p~v~G~e~~G~V~~vG~~v~~~~ 83 (373)
T cd08299 8 CKAAVLWEPKKP--FSIEEIEVAPPKAHEVRIKIVATGICRSDDHVVSGKLV--TPFPVILGHEAAGIVESVGEGVTTVK 83 (373)
T ss_pred eEEEEEecCCCC--cEEEEeecCCCCCCEEEEEEEEEEcCcccHHHhcCCCC--CCCCccccccceEEEEEeCCCCccCC
Confidence 688888876554 88899999999999999999999999999999888753 23578999999999999999999999
Q ss_pred CCCEEEEEc------------------------------------------------cCceeeeEEeecCCceEECCCCC
Q 029425 81 VGDQVCALL------------------------------------------------GGGGYAEKVAVPAGQVLPVPSGV 112 (193)
Q Consensus 81 ~G~~V~~~~------------------------------------------------~~g~~~~~~~~~~~~~~~~p~~~ 112 (193)
+||+|..++ ..|+|++|+.++.+.++++|+++
T Consensus 84 ~Gd~V~~~~~~~c~~c~~c~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~e~~~v~~~~~~~lP~~l 163 (373)
T cd08299 84 PGDKVIPLFVPQCGKCRACLNPESNLCLKNDLGKPQGLMQDGTSRFTCKGKPIHHFLGTSTFSEYTVVDEIAVAKIDAAA 163 (373)
T ss_pred CCCEEEECCCCCCCCChhhhCCCcccCcCcccccccccccCCccccccCCcccccccCCCcccceEEecccceeeCCCCC
Confidence 999998652 24889999999999999999999
Q ss_pred CHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHhhcCCcEEecC
Q 029425 113 SLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQPFNIRVFIGF 191 (193)
Q Consensus 113 ~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~~~G~~~~~~~ 191 (193)
++++++.+..++.++|+++....+++++++++|+|+ |.+|++++++++++|+ +|+++++++++++.++++|+++++++
T Consensus 164 ~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~-g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~a~~lGa~~~i~~ 242 (373)
T cd08299 164 PLEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGL-GGVGLSAIMGCKAAGASRIIAVDINKDKFAKAKELGATECINP 242 (373)
T ss_pred ChHHhheeccchHHHHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEecc
Confidence 999999999999999999877889999999999975 9999999999999999 89999999999999999999999986
Q ss_pred C
Q 029425 192 G 192 (193)
Q Consensus 192 ~ 192 (193)
.
T Consensus 243 ~ 243 (373)
T cd08299 243 Q 243 (373)
T ss_pred c
Confidence 4
No 35
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=100.00 E-value=2.4e-31 Score=212.41 Aligned_cols=190 Identities=26% Similarity=0.400 Sum_probs=169.1
Q ss_pred CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425 1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK 80 (193)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~ 80 (193)
|||++++.++.++.+++++.+.|.+++++++||+.++++|++|+..+.|.++.....|.++|||++|+|+++ +++.|+
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~--~~~~~~ 78 (325)
T cd05280 1 FKALVVEEQDGGVSLFLRTLPLDDLPEGDVLIRVHYSSLNYKDALAATGNGGVTRNYPHTPGIDAAGTVVSS--DDPRFR 78 (325)
T ss_pred CceEEEcccCCCCcceEEeCCCCCCCCCeEEEEEEEeecChHHHHHhcCCCCCCCCCCCccCcccEEEEEEe--CCCCCC
Confidence 899999998876679999999999999999999999999999999888876544445789999999999998 456799
Q ss_pred CCCEEEEEc------cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCC--C-CCCeEEEEcCCch
Q 029425 81 VGDQVCALL------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHL--S-PGESFLVHGGSSG 151 (193)
Q Consensus 81 ~G~~V~~~~------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~--~-~~~~vli~ga~g~ 151 (193)
+||+|++.. .+|+|++|+.++++.++++|+++++++++.+++.+.++|++++..... . .+++++|+|++|.
T Consensus 79 ~Gd~V~~~~~~~g~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~vlI~g~~g~ 158 (325)
T cd05280 79 EGDEVLVTGYDLGMNTDGGFAEYVRVPADWVVPLPEGLSLREAMILGTAGFTAALSVHRLEDNGQTPEDGPVLVTGATGG 158 (325)
T ss_pred CCCEEEEcccccCCCCCceeEEEEEEchhhEEECCCCCCHHHHHhhHHHHHHHHHHHHHHhhccCCCCCCEEEEECCccH
Confidence 999998763 368999999999999999999999999999999999999998655433 5 4579999999999
Q ss_pred HHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425 152 IGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFG 192 (193)
Q Consensus 152 ~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~ 192 (193)
+|++++++++.+|++|+++++++++.+.++++|++++++++
T Consensus 159 vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~ 199 (325)
T cd05280 159 VGSIAVAILAKLGYTVVALTGKEEQADYLKSLGASEVLDRE 199 (325)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEEcch
Confidence 99999999999999999999999999999999999998764
No 36
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=100.00 E-value=7.6e-32 Score=218.11 Aligned_cols=184 Identities=22% Similarity=0.387 Sum_probs=161.5
Q ss_pred EEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCCCCC
Q 029425 4 IVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKVGD 83 (193)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~~G~ 83 (193)
+++++++.+ +++++.+.|.++++|++||+.++++|++|++.+.+.+.....+|.++|||++|+|+++|+++..+ +||
T Consensus 2 ~~~~~~g~~--~~~~~~p~P~~~~~evlVrv~~~gic~sD~~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~-~Gd 78 (349)
T TIGR03201 2 WMMTEPGKP--MVKTRVEIPELGAGDVVVKVAGCGVCHTDLSYYYMGVRTNHALPLALGHEISGRVIQAGAGAASW-IGK 78 (349)
T ss_pred ceEecCCCC--ceEEeccCCCCCCCeEEEEEEEEeecccchHHHcCCCCccCCCCeeccccceEEEEEeCCCcCCC-CCC
Confidence 456666654 78889999999999999999999999999987644332223468899999999999999999877 999
Q ss_pred EEEEEc---------------------------cCceeeeEEeecCCceEECCC------CCCHHhHccCcchHHHHHHH
Q 029425 84 QVCALL---------------------------GGGGYAEKVAVPAGQVLPVPS------GVSLKDAAAFPEVACTVWST 130 (193)
Q Consensus 84 ~V~~~~---------------------------~~g~~~~~~~~~~~~~~~~p~------~~~~~~aa~~~~~~~~a~~~ 130 (193)
+|+..+ .+|+|++|+.++.+.++++|+ ++++++++++..++.++|++
T Consensus 79 rV~~~~~~~cg~c~~c~~g~~~~c~~~~~~g~~~~G~~ae~~~v~~~~~~~ip~~~~~~~~~~~~~~a~~~~~~~ta~~a 158 (349)
T TIGR03201 79 AVIVPAVIPCGECELCKTGRGTICRAQKMPGNDMQGGFASHIVVPAKGLCVVDEARLAAAGLPLEHVSVVADAVTTPYQA 158 (349)
T ss_pred EEEECCCCCCCCChhhhCcCcccCCCCCccCcCCCCcccceEEechHHeEECCcccccccCCCHHHhhhhcchHHHHHHH
Confidence 997621 258999999999999999999 89999998899999999999
Q ss_pred HHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425 131 VFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFG 192 (193)
Q Consensus 131 l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~ 192 (193)
+. ..+++++++++|+|+ |.+|++++|+|+++|++|++++++++++++++++|+++++|+.
T Consensus 159 ~~-~~~~~~g~~VlV~G~-G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~Ga~~~i~~~ 218 (349)
T TIGR03201 159 AV-QAGLKKGDLVIVIGA-GGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGFGADLTLNPK 218 (349)
T ss_pred HH-hcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceEecCc
Confidence 85 578899999999998 9999999999999999999999999999999999999999864
No 37
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=100.00 E-value=2.4e-31 Score=212.89 Aligned_cols=182 Identities=20% Similarity=0.284 Sum_probs=158.6
Q ss_pred CEEEEEcCC--CCC--CceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCC
Q 029425 1 MKAIVITQP--GSP--EVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNV 76 (193)
Q Consensus 1 m~a~~~~~~--~~~--~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~ 76 (193)
||+|++.++ +++ +.+++++.+.|+|+++||+|||.++++|+.|...... . ...|.++|+|++|+|++ .+
T Consensus 3 ~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~evlVkv~a~~in~~~~~~~~~--~--~~~p~v~G~e~~G~V~~---~~ 75 (329)
T cd08294 3 AKTWVLKKHFDGKPKESDFELVEEELPPLKDGEVLCEALFLSVDPYMRPYSKR--L--NEGDTMIGTQVAKVIES---KN 75 (329)
T ss_pred ceEEEEecCCCCCCCccceEEEecCCCCCCCCcEEEEEEEEecCHHHhccccc--C--CCCCcEecceEEEEEec---CC
Confidence 899999993 554 7899999999999999999999999999987652211 1 13578999999999985 44
Q ss_pred CCCCCCCEEEEEccCceeeeEEeecCC---ceEECCCCCC-----HHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcC
Q 029425 77 SRWKVGDQVCALLGGGGYAEKVAVPAG---QVLPVPSGVS-----LKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGG 148 (193)
Q Consensus 77 ~~~~~G~~V~~~~~~g~~~~~~~~~~~---~~~~~p~~~~-----~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga 148 (193)
..|++||+|+++ ++|++|+.++.+ .++++|++++ ...+++++.+++|||+++....++++|++++|+|+
T Consensus 76 ~~~~~Gd~V~~~---~~~~~~~~~~~~~~~~~~~iP~~~~~~~~~~~~~a~~~~~~~ta~~al~~~~~~~~g~~vlI~ga 152 (329)
T cd08294 76 SKFPVGTIVVAS---FGWRTHTVSDGKDQPDLYKLPADLPDDLPPSLALGVLGMPGLTAYFGLLEICKPKAGETVVVNGA 152 (329)
T ss_pred CCCCCCCEEEee---CCeeeEEEECCccccceEECCccccccCChHHHHHhcccHHHHHHHHHHHhcCCCCCCEEEEecC
Confidence 679999999876 469999999999 9999999987 23334678899999999988899999999999999
Q ss_pred CchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425 149 SSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFG 192 (193)
Q Consensus 149 ~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~ 192 (193)
+|.+|.+++|+|+.+|++|+++++++++.++++++|+++++|++
T Consensus 153 ~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~~Ga~~vi~~~ 196 (329)
T cd08294 153 AGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKELGFDAVFNYK 196 (329)
T ss_pred ccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeCC
Confidence 99999999999999999999999999999999999999999886
No 38
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=100.00 E-value=1.8e-31 Score=215.97 Aligned_cols=186 Identities=32% Similarity=0.444 Sum_probs=163.1
Q ss_pred CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCC-CCC---------CCCCCCCCCcceEEEEE
Q 029425 1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGS-YPP---------PKGASPYPGLECSGTIL 70 (193)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~-~~~---------~~~~p~~lg~e~~G~V~ 70 (193)
|||+++.+++ .+++++.+.|+++++||+||+.++++|++|+....+. ... ....|.++|+|++|+|+
T Consensus 1 mka~~~~~~~---~l~~~~~~~p~~~~~evlV~v~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~p~i~G~e~~G~V~ 77 (351)
T cd08233 1 MKAARYHGRK---DIRVEEVPEPPVKPGEVKIKVAWCGICGSDLHEYLDGPIFIPTEGHPHLTGETAPVTLGHEFSGVVV 77 (351)
T ss_pred CceEEEecCC---ceEEEeccCCCCCCCeEEEEEEEEEECccchHhhcCCCccccccccccccccCCCceecccceEEEE
Confidence 8999998754 3889999999999999999999999999998766532 111 11257899999999999
Q ss_pred EecCCCCCCCCCCEEEEEc----------------------------cCceeeeEEeecCCceEECCCCCCHHhHccCcc
Q 029425 71 SVGKNVSRWKVGDQVCALL----------------------------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPE 122 (193)
Q Consensus 71 ~vG~~~~~~~~G~~V~~~~----------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~ 122 (193)
++|++++.|++||+|.... .+|+|++|+.++.+.++++|+++++++++.+ .
T Consensus 78 ~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~~~~~~aa~~-~ 156 (351)
T cd08233 78 EVGSGVTGFKVGDRVVVEPTIKCGTCGACKRGLYNLCDSLGFIGLGGGGGGFAEYVVVPAYHVHKLPDNVPLEEAALV-E 156 (351)
T ss_pred EeCCCCCCCCCCCEEEECCCCCCCCChHHhCcCcccCCCCceeccCCCCCceeeEEEechHHeEECcCCCCHHHhhhc-c
Confidence 9999999999999998621 1589999999999999999999999888765 6
Q ss_pred hHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425 123 VACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQPFNIRVFIGFG 192 (193)
Q Consensus 123 ~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~~~G~~~~~~~~ 192 (193)
+..++|+++ ...+++++++++|+|+ |.+|++++|+++.+|+ +|+++++++++.++++++|++.++|++
T Consensus 157 ~~~ta~~~l-~~~~~~~g~~vlI~g~-g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~ga~~~i~~~ 225 (351)
T cd08233 157 PLAVAWHAV-RRSGFKPGDTALVLGA-GPIGLLTILALKAAGASKIIVSEPSEARRELAEELGATIVLDPT 225 (351)
T ss_pred HHHHHHHHH-HhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCC
Confidence 788999999 7788999999999986 9999999999999999 899999999999999999999999875
No 39
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=100.00 E-value=1e-31 Score=216.79 Aligned_cols=179 Identities=17% Similarity=0.186 Sum_probs=150.4
Q ss_pred EEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCC---CCCCCCCCCcceEEEEEEecCCCCC
Q 029425 2 KAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPP---PKGASPYPGLECSGTILSVGKNVSR 78 (193)
Q Consensus 2 ~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~---~~~~p~~lg~e~~G~V~~vG~~~~~ 78 (193)
|+++++.++ .+++++.+.|. +++||+|||+++|+|++|++.+.|.+.. ...+|.++|||++|+|+++|.+ .
T Consensus 4 ~~~~~~~~~---~~~~~~~~~P~-~~~eVlVkv~a~gIc~sD~~~~~G~~~~~~~~~~~P~i~GhE~~G~V~~~g~~--~ 77 (341)
T cd08237 4 QVYRLVRPK---FFEVTYEEENL-REDWVIVRPTYLSICHADQRYYQGNRSPEALKKKLPMALIHEGIGVVVSDPTG--T 77 (341)
T ss_pred cceEEeccc---eEEEeecCCCC-CCCeEEEEEEEEEEcCccHHHHcCCCCcccccCCCCeeccceeEEEEEeeCCC--c
Confidence 577777654 48999999985 9999999999999999999999886532 1246999999999999998764 6
Q ss_pred CCCCCEEEEEc------------------------cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHh
Q 029425 79 WKVGDQVCALL------------------------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMT 134 (193)
Q Consensus 79 ~~~G~~V~~~~------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~ 134 (193)
|++||+|...+ .+|+|+||+.++++.++++|+++++++++ +..++.++|+++...
T Consensus 78 ~~vGdrV~~~~~~~~~~~~~~~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~vP~~l~~~~aa-~~~~~~~a~~a~~~~ 156 (341)
T cd08237 78 YKVGTKVVMVPNTPVEKDEIIPENYLPSSRFRSSGYDGFMQDYVFLPPDRLVKLPDNVDPEVAA-FTELVSVGVHAISRF 156 (341)
T ss_pred cCCCCEEEECCCCCchhcccchhccCCCcceeEecCCCceEEEEEEchHHeEECCCCCChHHhh-hhchHHHHHHHHHHH
Confidence 99999997642 25889999999999999999999998776 556888899988543
Q ss_pred --cCCCCCCeEEEEcCCchHHHHHHHHHHH-CC-CEEEEEeCCcchHHHHhhcCCcEE
Q 029425 135 --SHLSPGESFLVHGGSSGIGTFAIQMGKC-QG-VRVFVTAGLATRFILCQPFNIRVF 188 (193)
Q Consensus 135 --~~~~~~~~vli~ga~g~~G~~~i~~~~~-~g-~~v~~~~~~~~~~~~~~~~G~~~~ 188 (193)
..+++|++++|.|+ |.+|++++|++++ +| ++|++++++++|++.++++|++..
T Consensus 157 ~~~~~~~g~~VlV~G~-G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~~ 213 (341)
T cd08237 157 EQIAHKDRNVIGVWGD-GNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETYL 213 (341)
T ss_pred hhcCCCCCCEEEEECC-CHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCceee
Confidence 35688999999996 9999999999996 65 589999999999999887776543
No 40
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=100.00 E-value=3.5e-31 Score=213.27 Aligned_cols=190 Identities=29% Similarity=0.467 Sum_probs=172.3
Q ss_pred CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425 1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK 80 (193)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~ 80 (193)
|||+++++++ +..+++++.+.|.+.+++++||+.++++|+.|...+.+.++.....|..+|+|++|+|+++|+++..++
T Consensus 1 m~a~~~~~~~-~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~vG~~~~~~~ 79 (341)
T cd08297 1 MKAAVVEEFG-EKPYEVKDVPVPEPGPGEVLVKLEASGVCHTDLHAALGDWPVKPKLPLIGGHEGAGVVVAVGPGVSGLK 79 (341)
T ss_pred CceEEeeccC-CCCceEEEeeCCCCCCCeEEEEEEEeecchhHHHHHcCCCCcCCCCCccCCcccceEEEEeCCCCCCCC
Confidence 9999999877 556899999999999999999999999999999888887654444577899999999999999999999
Q ss_pred CCCEEEEEc----------------------------cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHH
Q 029425 81 VGDQVCALL----------------------------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVF 132 (193)
Q Consensus 81 ~G~~V~~~~----------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~ 132 (193)
+||+|+..+ ..|++++|+.++.+.++++|+++++.+++.++..+.+||+++.
T Consensus 80 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~lp~~~~~~~~a~l~~~~~ta~~~~~ 159 (341)
T cd08297 80 VGDRVGVKWLYDACGKCEYCRTGDETLCPNQKNSGYTVDGTFAEYAIADARYVTPIPDGLSFEQAAPLLCAGVTVYKALK 159 (341)
T ss_pred CCCEEEEecCCCCCCCCccccCCCcccCCCccccccccCCcceeEEEeccccEEECCCCCCHHHHHHHHcchHHHHHHHH
Confidence 999998642 2588999999999999999999999999999999999999985
Q ss_pred HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425 133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFG 192 (193)
Q Consensus 133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~ 192 (193)
. .+++++++++|+|+.+.+|++++++++++|++|+++++++++.+.++++|++.+++++
T Consensus 160 ~-~~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~v~~~~ 218 (341)
T cd08297 160 K-AGLKPGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDVGDEKLELAKELGADAFVDFK 218 (341)
T ss_pred h-cCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCcEEEcCC
Confidence 5 5889999999999988899999999999999999999999999999999999999875
No 41
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=100.00 E-value=2.3e-31 Score=214.16 Aligned_cols=189 Identities=25% Similarity=0.390 Sum_probs=169.9
Q ss_pred CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCC--CCCCCCCCCCcceEEEEEEecCCCCC
Q 029425 1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYP--PPKGASPYPGLECSGTILSVGKNVSR 78 (193)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~--~~~~~p~~lg~e~~G~V~~vG~~~~~ 78 (193)
|||+++++++.+ +++.+.+.|++++++++||+.++++|++|+....+.++ ....+|.++|+|++|+|.++|+++..
T Consensus 1 ~ka~~~~~~~~~--~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~ 78 (340)
T cd05284 1 MKAARLYEYGKP--LRLEDVPVPEPGPGQVLVRVGGAGVCHSDLHVIDGVWGGILPYKLPFTLGHENAGWVEEVGSGVDG 78 (340)
T ss_pred CeeeEeccCCCC--ceEEeCCCCCCCCCeEEEEEEEEeecchhHHHHcCCCcccccCCCCeecccceeEEEEEeCCCCCc
Confidence 899999987644 78888888999999999999999999999998888765 23456789999999999999999999
Q ss_pred CCCCCEEEEEc---------------------------cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHH
Q 029425 79 WKVGDQVCALL---------------------------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTV 131 (193)
Q Consensus 79 ~~~G~~V~~~~---------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l 131 (193)
|++||+|+++. .+|+|++|+.++++.++++|+++++++++.++..+.+||+++
T Consensus 79 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~P~~ls~~~aa~l~~~~~ta~~~l 158 (340)
T cd05284 79 LKEGDPVVVHPPWGCGTCRYCRRGEENYCENARFPGIGTDGGFAEYLLVPSRRLVKLPRGLDPVEAAPLADAGLTAYHAV 158 (340)
T ss_pred CcCCCEEEEcCCCCCCCChHHhCcCcccCCCCcccCccCCCcceeeEEecHHHeEECCCCCCHHHhhhhcchHHHHHHHH
Confidence 99999998763 258999999999999999999999999999999999999998
Q ss_pred HHh-cCCCCCCeEEEEcCCchHHHHHHHHHHHCC-CEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425 132 FMT-SHLSPGESFLVHGGSSGIGTFAIQMGKCQG-VRVFVTAGLATRFILCQPFNIRVFIGFG 192 (193)
Q Consensus 132 ~~~-~~~~~~~~vli~ga~g~~G~~~i~~~~~~g-~~v~~~~~~~~~~~~~~~~G~~~~~~~~ 192 (193)
... ..+.++++++|+|+ +.+|++++++++.+| ++|+++++++++.+.++++|++++++++
T Consensus 159 ~~~~~~~~~~~~vlI~g~-~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~ 220 (340)
T cd05284 159 KKALPYLDPGSTVVVIGV-GGLGHIAVQILRALTPATVIAVDRSEEALKLAERLGADHVLNAS 220 (340)
T ss_pred HHhcccCCCCCEEEEEcC-cHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHhCCcEEEcCC
Confidence 765 46888999999996 679999999999999 7999999999999999999999999875
No 42
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=2.4e-31 Score=214.98 Aligned_cols=184 Identities=23% Similarity=0.305 Sum_probs=158.4
Q ss_pred CEEEEEcCCCCCCceEEEeecCCCC-CCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCC
Q 029425 1 MKAIVITQPGSPEVLQLQEVEDPQI-KDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRW 79 (193)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~-~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~ 79 (193)
|||+++++++. +++.+.+.|.| .++|++||+.++++|++|+..+..... ..+|.++|||++|+|+++|+++..|
T Consensus 1 Mka~~~~~~~~---~~~~~~~~P~~~~~~evlV~v~~~gi~~~D~~~~~~~~~--~~~p~i~G~e~~G~V~~vG~~v~~~ 75 (347)
T PRK10309 1 MKSVVNDTDGI---VRVAESPIPEIKHQDDVLVKVASSGLCGSDIPRIFKNGA--HYYPITLGHEFSGYVEAVGSGVDDL 75 (347)
T ss_pred CceEEEeCCCc---eEEEECCCCCCCCCCEEEEEEEEEEEchhcHHHHhCCCC--CCCCcccccceEEEEEEeCCCCCCC
Confidence 89999998653 88999999987 589999999999999999875432111 1247899999999999999999999
Q ss_pred CCCCEEEEEc---------------------------cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHH
Q 029425 80 KVGDQVCALL---------------------------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVF 132 (193)
Q Consensus 80 ~~G~~V~~~~---------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~ 132 (193)
++||+|+.++ .+|+|++|+.++++.++++|+++++++++.+. +..++|+++
T Consensus 76 ~vGd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~lP~~~s~~~aa~~~-~~~~~~~~~- 153 (347)
T PRK10309 76 HPGDAVACVPLLPCFTCPECLRGFYSLCAKYDFIGSRRDGGNAEYIVVKRKNLFALPTDMPIEDGAFIE-PITVGLHAF- 153 (347)
T ss_pred CCCCEEEECCCcCCCCCcchhCcCcccCCCcceeccCCCCccceeEEeehHHeEECcCCCCHHHhhhhh-HHHHHHHHH-
Confidence 9999998752 25899999999999999999999999888653 556678776
Q ss_pred HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCE-EEEEeCCcchHHHHhhcCCcEEecCC
Q 029425 133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVR-VFVTAGLATRFILCQPFNIRVFIGFG 192 (193)
Q Consensus 133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~-v~~~~~~~~~~~~~~~~G~~~~~~~~ 192 (193)
....++++++++|+|+ |.+|++++|+|+.+|++ |+++++++++.+.++++|+++++|++
T Consensus 154 ~~~~~~~g~~vlV~G~-g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~ 213 (347)
T PRK10309 154 HLAQGCEGKNVIIIGA-GTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQTFNSR 213 (347)
T ss_pred HhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCceEecCc
Confidence 5678899999999986 99999999999999996 78888899999999999999999875
No 43
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=100.00 E-value=6.3e-31 Score=213.95 Aligned_cols=187 Identities=27% Similarity=0.371 Sum_probs=168.4
Q ss_pred CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425 1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK 80 (193)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~ 80 (193)
|||+++++++.+ +++++.+.|.+.++||+||+.++++|++|+....+.++ ...|.++|+|++|+|+++|+++.+++
T Consensus 3 ~~a~~~~~~~~~--~~~~~~~~p~~~~~~v~Vkv~a~gi~~~d~~~~~g~~~--~~~p~v~G~e~~G~V~~vG~~v~~~~ 78 (365)
T cd08278 3 TTAAVVREPGGP--FVLEDVELDDPRPDEVLVRIVATGICHTDLVVRDGGLP--TPLPAVLGHEGAGVVEAVGSAVTGLK 78 (365)
T ss_pred cEEeeeccCCCc--ceEEEeecCCCCCCeEEEEEEEeecCcccHHHhcCCCC--CCCCcccccceeEEEEEeCCCcccCC
Confidence 899999987654 78889999999999999999999999999999888764 23578999999999999999999999
Q ss_pred CCCEEEEEc-------------------------------------------------cCceeeeEEeecCCceEECCCC
Q 029425 81 VGDQVCALL-------------------------------------------------GGGGYAEKVAVPAGQVLPVPSG 111 (193)
Q Consensus 81 ~G~~V~~~~-------------------------------------------------~~g~~~~~~~~~~~~~~~~p~~ 111 (193)
+||+|+... ..|+|++|+.++++.++++|++
T Consensus 79 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~v~~~~~~~iP~~ 158 (365)
T cd08278 79 PGDHVVLSFASCGECANCLSGHPAYCENFFPLNFSGRRPDGSTPLSLDDGTPVHGHFFGQSSFATYAVVHERNVVKVDKD 158 (365)
T ss_pred CCCEEEEcccCCCCChHHhCCCcccccCcccccccccccCCcccccccCCcccccccccccceeeEEEecchhEEECCCC
Confidence 999998411 2478999999999999999999
Q ss_pred CCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHhhcCCcEEec
Q 029425 112 VSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQPFNIRVFIG 190 (193)
Q Consensus 112 ~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~~~G~~~~~~ 190 (193)
+++++++.++..+.+||.++.....++++++++|+|+ |.+|++++++++++|+ .++++++++++.+.++++|++.+++
T Consensus 159 ~s~~~a~~l~~~~~ta~~~~~~~~~~~~g~~vlI~g~-g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~g~~~~i~ 237 (365)
T cd08278 159 VPLELLAPLGCGIQTGAGAVLNVLKPRPGSSIAVFGA-GAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGATHVIN 237 (365)
T ss_pred CCHHHhhhhcchhhhhhHHHhhhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCcEEec
Confidence 9999999999999999999878888999999999975 9999999999999999 5888888999999999999999998
Q ss_pred CC
Q 029425 191 FG 192 (193)
Q Consensus 191 ~~ 192 (193)
++
T Consensus 238 ~~ 239 (365)
T cd08278 238 PK 239 (365)
T ss_pred CC
Confidence 75
No 44
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=100.00 E-value=8.9e-31 Score=209.76 Aligned_cols=189 Identities=25% Similarity=0.373 Sum_probs=171.6
Q ss_pred CEEEEEcCCCC--CCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCC
Q 029425 1 MKAIVITQPGS--PEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSR 78 (193)
Q Consensus 1 m~a~~~~~~~~--~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~ 78 (193)
|||+++.+++. +..+++++.+.|.+.++|++||+.++++|+.|+....+.++....+|.++|+|++|+|..+|+++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~i~v~~~gi~~~d~~~~~g~~~~~~~~p~~~g~e~~G~v~~vG~~v~~ 81 (329)
T cd08250 2 FRKLVVHRLSPNFREATSIVDVPVPLPGPGEVLVKNRFVGINASDINFTAGRYDPGVKPPFDCGFEGVGEVVAVGEGVTD 81 (329)
T ss_pred ceEEEeccCCCCcccCceEEecCCCCCCCCEEEEEEEEEecCHHHHHHHhCCCCCCCCCCcccCceeEEEEEEECCCCCC
Confidence 89999999877 6778999999999999999999999999999999888776544456889999999999999999999
Q ss_pred CCCCCEEEEEccCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHH
Q 029425 79 WKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQ 158 (193)
Q Consensus 79 ~~~G~~V~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~ 158 (193)
+++||+|+++. .|+|++|+.++.+.++++|++ +.+++.++.++.++|+++....+++++++++|+|++|.+|+++++
T Consensus 82 ~~~Gd~V~~~~-~g~~~s~~~v~~~~~~~ip~~--~~~~a~l~~~~~ta~~~l~~~~~~~~~~~vlI~ga~g~ig~~~~~ 158 (329)
T cd08250 82 FKVGDAVATMS-FGAFAEYQVVPARHAVPVPEL--KPEVLPLLVSGLTASIALEEVGEMKSGETVLVTAAAGGTGQFAVQ 158 (329)
T ss_pred CCCCCEEEEec-CcceeEEEEechHHeEECCCC--cchhhhcccHHHHHHHHHHHhcCCCCCCEEEEEeCccHHHHHHHH
Confidence 99999999884 588999999999999999997 346778899999999999877889999999999999999999999
Q ss_pred HHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425 159 MGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFG 192 (193)
Q Consensus 159 ~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~ 192 (193)
+++++|++|+.+++++++.+.++++|++.+++++
T Consensus 159 ~a~~~g~~v~~~~~~~~~~~~~~~~g~~~v~~~~ 192 (329)
T cd08250 159 LAKLAGCHVIGTCSSDEKAEFLKSLGCDRPINYK 192 (329)
T ss_pred HHHHcCCeEEEEeCcHHHHHHHHHcCCceEEeCC
Confidence 9999999999999999999999999998888754
No 45
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=100.00 E-value=5.5e-31 Score=211.01 Aligned_cols=181 Identities=16% Similarity=0.227 Sum_probs=156.3
Q ss_pred EEEEEcCC----CCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCC
Q 029425 2 KAIVITQP----GSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVS 77 (193)
Q Consensus 2 ~a~~~~~~----~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~ 77 (193)
|.|++.+. ..|+.+++.+.+.|.|+++||+|||.++++|+.++. +.+... ..|.++|.|++|+|.++|+
T Consensus 2 ~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~evlv~v~a~~~n~~~~~---g~~~~~-~~~~i~G~~~~g~v~~~~~--- 74 (325)
T TIGR02825 2 KTWTLKKHFVGYPTDSDFELKTVELPPLNNGEVLLEALFLSVDPYMRV---AAKRLK-EGDTMMGQQVARVVESKNV--- 74 (325)
T ss_pred cEEEEecCCCCCCCCCceEEEeccCCCCCCCcEEEEEEEEecCHHHhc---ccCcCC-CCCcEecceEEEEEEeCCC---
Confidence 45555542 345779999999999999999999999999997653 332221 2367999999999999774
Q ss_pred CCCCCCEEEEEccCceeeeEEeecCCceEEC----CCCCCHHhH-ccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchH
Q 029425 78 RWKVGDQVCALLGGGGYAEKVAVPAGQVLPV----PSGVSLKDA-AAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGI 152 (193)
Q Consensus 78 ~~~~G~~V~~~~~~g~~~~~~~~~~~~~~~~----p~~~~~~~a-a~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~ 152 (193)
.|++||+|+++ ++|++|+.++.+.+.++ |++++++++ ++++++++|||+++.+..++++|++++|+|++|.+
T Consensus 75 ~~~~GdrV~~~---~~~~~~~~~~~~~~~~l~~~~p~~~~~~~aaa~l~~~~~TA~~~l~~~~~~~~g~~VLI~ga~g~v 151 (325)
T TIGR02825 75 ALPKGTIVLAS---PGWTSHSISDGKDLEKLLTEWPDTLPLSLALGTVGMPGLTAYFGLLEICGVKGGETVMVNAAAGAV 151 (325)
T ss_pred CCCCCCEEEEe---cCceeeEEechhheEEccccccCCCCHHHHHHhcccHHHHHHHHHHHHhCCCCCCEEEEeCCccHH
Confidence 59999999986 35999999998888777 899999987 67899999999999888999999999999999999
Q ss_pred HHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425 153 GTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFG 192 (193)
Q Consensus 153 G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~ 192 (193)
|++++|+|+.+|++|+.+++++++.++++++|++.++|++
T Consensus 152 G~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~lGa~~vi~~~ 191 (325)
T TIGR02825 152 GSVVGQIAKLKGCKVVGAAGSDEKVAYLKKLGFDVAFNYK 191 (325)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEecc
Confidence 9999999999999999999999999999999999999986
No 46
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=100.00 E-value=5.4e-31 Score=210.95 Aligned_cols=191 Identities=31% Similarity=0.443 Sum_probs=174.8
Q ss_pred CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425 1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK 80 (193)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~ 80 (193)
||++++++++.+..+++++.+.|.+.++|++||+.++++|++|+....+.++.. .+|.++|+|++|+|+.+|+++..++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~i~v~~~gi~~~d~~~~~g~~~~~-~~~~~~g~e~~G~v~~vG~~v~~~~ 80 (327)
T PRK10754 2 AKRIEFHKHGGPEVLQAVEFTPADPAENEVQVENKAIGINYIDTYIRSGLYPPP-SLPSGLGTEAAGVVSKVGSGVKHIK 80 (327)
T ss_pred ceEEEEeccCChhHeEEeeccCCCCCCCEEEEEEEEEEcCHHHhhhcCCCCCCC-CCCCccCcceEEEEEEeCCCCCCCC
Confidence 899999999988899999999999999999999999999999998887766532 2477899999999999999999999
Q ss_pred CCCEEEEEc-cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHH
Q 029425 81 VGDQVCALL-GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQM 159 (193)
Q Consensus 81 ~G~~V~~~~-~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~ 159 (193)
+||+|+... ..|+|++|+.++.+.++++|+++++++++.++..+.++|+++....+++++++++|+|++|.+|++++++
T Consensus 81 ~Gd~V~~~~~~~g~~~~~v~v~~~~~~~lp~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~ig~~~~~l 160 (327)
T PRK10754 81 VGDRVVYAQSALGAYSSVHNVPADKAAILPDAISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQW 160 (327)
T ss_pred CCCEEEECCCCCcceeeEEEcCHHHceeCCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEeCCcHHHHHHHHH
Confidence 999998653 3588999999999999999999999999988899999999987778899999999999899999999999
Q ss_pred HHHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425 160 GKCQGVRVFVTAGLATRFILCQPFNIRVFIGFG 192 (193)
Q Consensus 160 ~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~ 192 (193)
++++|++++.++.++++.++++++|++.+++++
T Consensus 161 ak~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~ 193 (327)
T PRK10754 161 AKALGAKLIGTVGSAQKAQRAKKAGAWQVINYR 193 (327)
T ss_pred HHHcCCEEEEEeCCHHHHHHHHHCCCCEEEcCC
Confidence 999999999999999999999999999888764
No 47
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=100.00 E-value=7.1e-31 Score=209.99 Aligned_cols=190 Identities=24% Similarity=0.360 Sum_probs=164.9
Q ss_pred CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425 1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK 80 (193)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~ 80 (193)
|||+++.+++.+..+.+++.+.|.+.++|++||+.++++|+.|.....+.......+|.++|||++|+|+++| +..|+
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~ev~i~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~V~~~~--~~~~~ 78 (326)
T cd08289 1 FQALVVEKDEDDVSVSVKNLTLDDLPEGDVLIRVAYSSVNYKDGLASIPGGKIVKRYPFIPGIDLAGTVVESN--DPRFK 78 (326)
T ss_pred CeeEEEeccCCcceeEEEEccCCCCCCCeEEEEEEEEecChHHhhhhcCCccccCCCCcCcccceeEEEEEcC--CCCCC
Confidence 8999999988777788999999999999999999999999999866543222122357899999999999954 46799
Q ss_pred CCCEEEEEc------cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcC---CCCCCeEEEEcCCch
Q 029425 81 VGDQVCALL------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSH---LSPGESFLVHGGSSG 151 (193)
Q Consensus 81 ~G~~V~~~~------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~---~~~~~~vli~ga~g~ 151 (193)
+||+|+... .+|+|++|+.++++.++++|+++++++++.+++.+.++|+++....+ ..++++++|+|++|.
T Consensus 79 ~Gd~V~~~~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~~~~vlI~g~~g~ 158 (326)
T cd08289 79 PGDEVIVTSYDLGVSHHGGYSEYARVPAEWVVPLPKGLTLKEAMILGTAGFTAALSIHRLEENGLTPEQGPVLVTGATGG 158 (326)
T ss_pred CCCEEEEcccccCCCCCCcceeEEEEcHHHeEECCCCCCHHHHhhhhhHHHHHHHHHHHHHhcCCCCCCCEEEEEcCCch
Confidence 999998874 36999999999999999999999999999999999999988854332 345789999999999
Q ss_pred HHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425 152 IGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFG 192 (193)
Q Consensus 152 ~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~ 192 (193)
+|++++++|+++|++|+++++++++.++++++|++.+++++
T Consensus 159 vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~v~~~~ 199 (326)
T cd08289 159 VGSLAVSILAKLGYEVVASTGKADAADYLKKLGAKEVIPRE 199 (326)
T ss_pred HHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCEEEcch
Confidence 99999999999999999999999999999999999998865
No 48
>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases. Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal
Probab=100.00 E-value=1.1e-30 Score=208.74 Aligned_cols=190 Identities=24% Similarity=0.383 Sum_probs=167.2
Q ss_pred CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425 1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK 80 (193)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~ 80 (193)
|||+++++++.++.+++++.+.|.++++|++||+.++++|+.|.....+.+.....+|.++|+|++|+|++ +++..++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~--~~~~~~~ 78 (324)
T cd08288 1 FKALVLEKDDGGTSAELRELDESDLPEGDVTVEVHYSTLNYKDGLAITGKGGIVRTFPLVPGIDLAGTVVE--SSSPRFK 78 (324)
T ss_pred CeeEEEeccCCCcceEEEECCCCCCCCCeEEEEEEEEecCHHHHHHhcCCccccCCCCCccccceEEEEEe--CCCCCCC
Confidence 89999999887777999999999999999999999999999999888776533233578899999999998 6677899
Q ss_pred CCCEEEEEc------cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHH--hcCCC-CCCeEEEEcCCch
Q 029425 81 VGDQVCALL------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFM--TSHLS-PGESFLVHGGSSG 151 (193)
Q Consensus 81 ~G~~V~~~~------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~--~~~~~-~~~~vli~ga~g~ 151 (193)
+||+|..+. .+|+|++|+.++.+.++++|++++.++++.++..+++++.++.. ..... ++++++|+|++|.
T Consensus 79 ~Gd~V~~~~~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~~~~~~~~~~ta~~~~~~~~~~~~~~~~~~vlI~ga~g~ 158 (324)
T cd08288 79 PGDRVVLTGWGVGERHWGGYAQRARVKADWLVPLPEGLSARQAMAIGTAGFTAMLCVMALEDHGVTPGDGPVLVTGAAGG 158 (324)
T ss_pred CCCEEEECCccCCCCCCCcceeEEEEchHHeeeCCCCCCHHHHhhhhhHHHHHHHHHHHHhhcCcCCCCCEEEEECCCcH
Confidence 999999863 25889999999999999999999999999999999999877641 23444 6789999999999
Q ss_pred HHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425 152 IGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFG 192 (193)
Q Consensus 152 ~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~ 192 (193)
+|++++|+|+++|++++.++.++++.+.++++|++++++++
T Consensus 159 vg~~~~~~A~~~G~~vi~~~~~~~~~~~~~~~g~~~~~~~~ 199 (324)
T cd08288 159 VGSVAVALLARLGYEVVASTGRPEEADYLRSLGASEIIDRA 199 (324)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcCCCEEEEcc
Confidence 99999999999999999999999999999999999999875
No 49
>PRK10083 putative oxidoreductase; Provisional
Probab=100.00 E-value=7.7e-31 Score=211.11 Aligned_cols=185 Identities=25% Similarity=0.330 Sum_probs=162.3
Q ss_pred CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425 1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK 80 (193)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~ 80 (193)
|||+++.+++ .+++++.+.|.|+++|++||+.++++|++|+..+.+.++.. ++|.++|||++|+|+.+|+++..++
T Consensus 1 m~a~~~~~~~---~~~~~~~~~p~~~~~~vlV~v~~~gi~~~d~~~~~g~~~~~-~~p~i~G~e~~G~V~~vG~~v~~~~ 76 (339)
T PRK10083 1 MKSIVIEKPN---SLAIEERPIPQPAAGEVRVKVKLAGICGSDSHIYRGHNPFA-KYPRVIGHEFFGVIDAVGEGVDAAR 76 (339)
T ss_pred CeEEEEecCC---eeEEEeccCCCCCCCeEEEEEEEEEEcccchHHHcCCCCcC-CCCcccccceEEEEEEECCCCccCC
Confidence 8999999765 48899999999999999999999999999999888876532 4588999999999999999999999
Q ss_pred CCCEEE---------------------------EEccCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHH
Q 029425 81 VGDQVC---------------------------ALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFM 133 (193)
Q Consensus 81 ~G~~V~---------------------------~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~ 133 (193)
+||+|+ ++..+|+|++|+.++.+.++++|+++++++++ +..++.++|+++ .
T Consensus 77 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~a~-~~~~~~~a~~~~-~ 154 (339)
T PRK10083 77 IGERVAVDPVISCGHCYPCSIGKPNVCTSLVVLGVHRDGGFSEYAVVPAKNAHRIPDAIADQYAV-MVEPFTIAANVT-G 154 (339)
T ss_pred CCCEEEEccccCCCCCccccCcCcccCCCCceEEEccCCcceeeEEechHHeEECcCCCCHHHHh-hhchHHHHHHHH-H
Confidence 999998 34346899999999999999999999988776 556778888544 6
Q ss_pred hcCCCCCCeEEEEcCCchHHHHHHHHHHH-CCCE-EEEEeCCcchHHHHhhcCCcEEecCC
Q 029425 134 TSHLSPGESFLVHGGSSGIGTFAIQMGKC-QGVR-VFVTAGLATRFILCQPFNIRVFIGFG 192 (193)
Q Consensus 134 ~~~~~~~~~vli~ga~g~~G~~~i~~~~~-~g~~-v~~~~~~~~~~~~~~~~G~~~~~~~~ 192 (193)
..+++++++++|+| .|.+|++++|++++ +|++ ++++.+++++.+.++++|++.++|++
T Consensus 155 ~~~~~~g~~vlI~g-~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~ 214 (339)
T PRK10083 155 RTGPTEQDVALIYG-AGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGADWVINNA 214 (339)
T ss_pred hcCCCCCCEEEEEC-CCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCCcEEecCc
Confidence 78899999999999 59999999999997 6995 66777889999999999999999875
No 50
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=100.00 E-value=1.9e-30 Score=207.13 Aligned_cols=191 Identities=32% Similarity=0.483 Sum_probs=170.9
Q ss_pred CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCC--CCCCCCCCCcceEEEEEEecCCCCC
Q 029425 1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPP--PKGASPYPGLECSGTILSVGKNVSR 78 (193)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~--~~~~p~~lg~e~~G~V~~vG~~~~~ 78 (193)
|||+++++++.+..+++.+.+.|.+.+++++||+.++++|+.|+....|..+. ....|.++|+|++|+|+++|+++..
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~g~e~~G~v~~~G~~v~~ 80 (324)
T cd08244 1 MRAIRLHEFGPPEVLVPEDVPDPVPGPGQVRIAVAAAGVHFVDTQLRSGWGPGPFPPELPYVPGGEVAGVVDAVGPGVDP 80 (324)
T ss_pred CeEEEEcCCCCccceEEeccCCCCCCCCEEEEEEEEEeCCHHHHHHhCCCCCCCCCCCCCcCCccceEEEEEEeCCCCCC
Confidence 89999998877777888887777789999999999999999999888776432 2345788999999999999999999
Q ss_pred CCCCCEEEEEcc--CceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHH
Q 029425 79 WKVGDQVCALLG--GGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFA 156 (193)
Q Consensus 79 ~~~G~~V~~~~~--~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~ 156 (193)
+++||+|+++.. .|+|++|+.++.+.++++|+++++++++.++..++++| ++....+++++++++|+|++|.+|.++
T Consensus 81 ~~~Gd~V~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~a~~~~~~~~ta~-~~~~~~~~~~~~~vlI~g~~~~~g~~~ 159 (324)
T cd08244 81 AWLGRRVVAHTGRAGGGYAELAVADVDSLHPVPDGLDLEAAVAVVHDGRTAL-GLLDLATLTPGDVVLVTAAAGGLGSLL 159 (324)
T ss_pred CCCCCEEEEccCCCCceeeEEEEEchHHeEeCCCCCCHHHHhhhcchHHHHH-HHHHhcCCCCCCEEEEEcCCchHHHHH
Confidence 999999998852 68999999999999999999999999999999999995 555778899999999999999999999
Q ss_pred HHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425 157 IQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFG 192 (193)
Q Consensus 157 i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~ 192 (193)
+++|+.+|++|+.+++++++.+.++++|++.+++++
T Consensus 160 ~~la~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~ 195 (324)
T cd08244 160 VQLAKAAGATVVGAAGGPAKTALVRALGADVAVDYT 195 (324)
T ss_pred HHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEecC
Confidence 999999999999999999999999999998888764
No 51
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=99.98 E-value=1.2e-30 Score=214.23 Aligned_cols=192 Identities=29% Similarity=0.477 Sum_probs=166.8
Q ss_pred CEEEEEcC--CCCCC-ceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCC---------CCCCCCCCCcceEEE
Q 029425 1 MKAIVITQ--PGSPE-VLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPP---------PKGASPYPGLECSGT 68 (193)
Q Consensus 1 m~a~~~~~--~~~~~-~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~---------~~~~p~~lg~e~~G~ 68 (193)
|||++++. ++.+. .+++++.+.|.++++||+||+.++++|++|+....+.... ....+.++|||++|+
T Consensus 13 ~~a~~~~~~~~g~~~~~~~~~~~~~p~l~~~evlI~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~G~e~~G~ 92 (393)
T cd08246 13 MYAFAIRPERYGDPAQAIQLEDVPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAARQRRGRDEPYHIGGSDASGI 92 (393)
T ss_pred hhheeeecccCCCcccceEEeecCCCCCCCCEEEEEEEEEeeccchhhhhcCCCccccccccccCCCCCccccccceEEE
Confidence 78888863 44443 5888999999999999999999999999999877664110 011235899999999
Q ss_pred EEEecCCCCCCCCCCEEEEEcc----------------------------CceeeeEEeecCCceEECCCCCCHHhHccC
Q 029425 69 ILSVGKNVSRWKVGDQVCALLG----------------------------GGGYAEKVAVPAGQVLPVPSGVSLKDAAAF 120 (193)
Q Consensus 69 V~~vG~~~~~~~~G~~V~~~~~----------------------------~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~ 120 (193)
|+++|++++.+++||+|+.++. +|+|++|+.++...++++|+++++++++.+
T Consensus 93 V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~~~~~~~~g~~~~~g~~a~y~~v~~~~l~~iP~~l~~~~aa~l 172 (393)
T cd08246 93 VWAVGEGVKNWKVGDEVVVHCSVWDGNDPERAGGDPMFDPSQRIWGYETNYGSFAQFALVQATQLMPKPKHLSWEEAAAY 172 (393)
T ss_pred EEEeCCCCCcCCCCCEEEEeccccccCcccccccccccccccccccccCCCCcceeEEEechHHeEECCCCCCHHHHhhh
Confidence 9999999999999999988742 489999999999999999999999999999
Q ss_pred cchHHHHHHHHHHh--cCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425 121 PEVACTVWSTVFMT--SHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFG 192 (193)
Q Consensus 121 ~~~~~~a~~~l~~~--~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~ 192 (193)
+.++.+||+++... .+++++++++|+|++|.+|++++++++++|++++++++++++.++++++|+++++|++
T Consensus 173 ~~~~~tA~~al~~~~~~~~~~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~~s~~~~~~~~~~G~~~~i~~~ 246 (393)
T cd08246 173 MLVGATAYRMLFGWNPNTVKPGDNVLIWGASGGLGSMAIQLARAAGANPVAVVSSEEKAEYCRALGAEGVINRR 246 (393)
T ss_pred cccHHHHHHHHhhcccccCCCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHcCCCEEEccc
Confidence 99999999998654 6789999999999999999999999999999999999999999999999999999863
No 52
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.98 E-value=1.8e-30 Score=210.14 Aligned_cols=186 Identities=22% Similarity=0.349 Sum_probs=165.9
Q ss_pred CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425 1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK 80 (193)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~ 80 (193)
|||+++.+++. +++++.+.|.+.++|++||+.++++|++|+....+.+.. ...|.++|||++|+|+++|+++..++
T Consensus 1 mka~~~~~~~~---~~l~~~~~p~~~~~evlIkv~a~~i~~~d~~~~~g~~~~-~~~~~~~G~e~~G~V~~vG~~v~~~~ 76 (351)
T cd08285 1 MKAFAMLGIGK---VGWIEKPIPVCGPNDAIVRPTAVAPCTSDVHTVWGGAPG-ERHGMILGHEAVGVVEEVGSEVKDFK 76 (351)
T ss_pred CceEEEccCCc---cEEEECCCCCCCCCeEEEEEEEEEechhhHHHhcCCCCC-CCCCcccCcceEEEEEEecCCcCccC
Confidence 89999998764 678888888899999999999999999999888776543 34588999999999999999999999
Q ss_pred CCCEEEEEc------------------------------cCceeeeEEeecCC--ceEECCCCCCHHhHccCcchHHHHH
Q 029425 81 VGDQVCALL------------------------------GGGGYAEKVAVPAG--QVLPVPSGVSLKDAAAFPEVACTVW 128 (193)
Q Consensus 81 ~G~~V~~~~------------------------------~~g~~~~~~~~~~~--~~~~~p~~~~~~~aa~~~~~~~~a~ 128 (193)
+||+|+..+ .+|+|++|+.++.+ .++++|+++++++++.++.++.++|
T Consensus 77 ~Gd~V~~~~~~~~~~c~~c~~g~~~~~~~~~~~~~~~~~~~g~~~~y~~v~~~~~~~~~lP~~~~~~~aa~~~~~~~ta~ 156 (351)
T cd08285 77 PGDRVIVPAITPDWRSVAAQRGYPSQSGGMLGGWKFSNFKDGVFAEYFHVNDADANLAPLPDGLTDEQAVMLPDMMSTGF 156 (351)
T ss_pred CCCEEEEcCcCCCCCCHHHHCcCcccCcCCCCCccccCCCCcceeEEEEcchhhCceEECCCCCCHHHhhhhccchhhHH
Confidence 999998742 25899999999874 8999999999999999999999999
Q ss_pred HHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425 129 STVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQPFNIRVFIGFG 192 (193)
Q Consensus 129 ~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~~~G~~~~~~~~ 192 (193)
+++ ....++++++++|+|+ |.+|++++|+++.+|+ .++++.+++++.+.++++|++++++++
T Consensus 157 ~~~-~~~~~~~g~~vlI~g~-g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~ 219 (351)
T cd08285 157 HGA-ELANIKLGDTVAVFGI-GPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGATDIVDYK 219 (351)
T ss_pred HHH-HccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCceEecCC
Confidence 996 6788999999999975 9999999999999999 588888889999999999999999875
No 53
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=99.98 E-value=3.2e-30 Score=208.63 Aligned_cols=187 Identities=15% Similarity=0.183 Sum_probs=157.0
Q ss_pred EEEEEcCCC----CCCceEEEee---cCC-CCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCc--ceEEEEEE
Q 029425 2 KAIVITQPG----SPEVLQLQEV---EDP-QIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGL--ECSGTILS 71 (193)
Q Consensus 2 ~a~~~~~~~----~~~~~~~~~~---~~~-~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~--e~~G~V~~ 71 (193)
|.|++.+.. .+++|++++. +.| +++++|||||+.++++|+.|+..+.+.... ...|.++|+ +++|+|..
T Consensus 10 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~gevlVkv~a~~inp~~~~~~~~~~~~-~~~p~~~G~~~~~~G~v~~ 88 (348)
T PLN03154 10 KQVILKNYIDGIPKETDMEVKLGNKIELKAPKGSGAFLVKNLYLSCDPYMRGRMRDFHDS-YLPPFVPGQRIEGFGVSKV 88 (348)
T ss_pred eEEEEecCCCCCCCcccEEEEeecccCCCCCCCCCeEEEEEEEEccCHHHHHhhhccCCC-CCCCcCCCCeeEeeEEEEE
Confidence 667775432 3467998885 444 358999999999999999998655432221 224788997 88999999
Q ss_pred ecCCCCCCCCCCEEEEEccCceeeeEEeecCCc--eEE--CCCCCCHH-hHccCcchHHHHHHHHHHhcCCCCCCeEEEE
Q 029425 72 VGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQ--VLP--VPSGVSLK-DAAAFPEVACTVWSTVFMTSHLSPGESFLVH 146 (193)
Q Consensus 72 vG~~~~~~~~G~~V~~~~~~g~~~~~~~~~~~~--~~~--~p~~~~~~-~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ 146 (193)
+|+++..|++||+|.++ ++|++|..++.+. +++ +|++++++ ++++++++++|||+++....++++|++++|+
T Consensus 89 vg~~v~~~~~Gd~V~~~---~~~aey~~v~~~~~~~~~~~~P~~~~~~~~aa~l~~~~~TA~~al~~~~~~~~g~~VlV~ 165 (348)
T PLN03154 89 VDSDDPNFKPGDLISGI---TGWEEYSLIRSSDNQLRKIQLQDDIPLSYHLGLLGMAGFTAYAGFYEVCSPKKGDSVFVS 165 (348)
T ss_pred EecCCCCCCCCCEEEec---CCcEEEEEEeccccceEEccCcCCCCHHHHHHHcccHHHHHHHHHHHhcCCCCCCEEEEe
Confidence 99999999999999876 5699999888753 544 58999986 6888999999999999888899999999999
Q ss_pred cCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHh-hcCCcEEecCC
Q 029425 147 GGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQ-PFNIRVFIGFG 192 (193)
Q Consensus 147 ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~-~~G~~~~~~~~ 192 (193)
|++|.+|++++|+|+++|++|+++++++++.++++ ++|++.++||+
T Consensus 166 GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa~~vi~~~ 212 (348)
T PLN03154 166 AASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGFDEAFNYK 212 (348)
T ss_pred cCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCCCEEEECC
Confidence 99999999999999999999999999999999997 79999999985
No 54
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=99.98 E-value=1.5e-30 Score=209.21 Aligned_cols=186 Identities=25% Similarity=0.362 Sum_probs=166.9
Q ss_pred CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425 1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK 80 (193)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~ 80 (193)
||++++++++.+. .+++.+.|.+.++|++||+.++++|++|+..+.+.++. ..|.++|+|++|+|+++|+++..|+
T Consensus 1 mka~~~~~~~~~~--~~~~~~~p~~~~~evlv~v~~~~i~~~d~~~~~g~~~~--~~~~~~g~e~~G~V~~~G~~v~~~~ 76 (338)
T PRK09422 1 MKAAVVNKDHTGD--VVVEKTLRPLKHGEALVKMEYCGVCHTDLHVANGDFGD--KTGRILGHEGIGIVKEVGPGVTSLK 76 (338)
T ss_pred CeEEEecCCCCCc--eEEEecCCCCCCCeEEEEEEEEeechhHHHHHcCCCCC--CCCccCCcccceEEEEECCCCccCC
Confidence 9999999877642 27788999999999999999999999999888876543 2367899999999999999999999
Q ss_pred CCCEEEEE-----------c-----------------cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHH
Q 029425 81 VGDQVCAL-----------L-----------------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVF 132 (193)
Q Consensus 81 ~G~~V~~~-----------~-----------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~ 132 (193)
+||+|+.. + .+|++++|+.++.+.++++|+++++.+++.++.+++++|+++
T Consensus 77 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~~- 155 (338)
T PRK09422 77 VGDRVSIAWFFEGCGHCEYCTTGRETLCRSVKNAGYTVDGGMAEQCIVTADYAVKVPEGLDPAQASSITCAGVTTYKAI- 155 (338)
T ss_pred CCCEEEEccCCCCCCCChhhcCCCcccCCCccccCccccCcceeEEEEchHHeEeCCCCCCHHHeehhhcchhHHHHHH-
Confidence 99999861 1 258999999999999999999999999999999999999998
Q ss_pred HhcCCCCCCeEEEEcCCchHHHHHHHHHHH-CCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425 133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKC-QGVRVFVTAGLATRFILCQPFNIRVFIGFG 192 (193)
Q Consensus 133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~-~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~ 192 (193)
...+++++++++|+| .|.+|+++++++++ +|++|+++++++++.+.++++|++.+++++
T Consensus 156 ~~~~~~~g~~vlV~g-~g~vG~~~~~la~~~~g~~v~~~~~~~~~~~~~~~~g~~~v~~~~ 215 (338)
T PRK09422 156 KVSGIKPGQWIAIYG-AGGLGNLALQYAKNVFNAKVIAVDINDDKLALAKEVGADLTINSK 215 (338)
T ss_pred HhcCCCCCCEEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHcCCcEEeccc
Confidence 778899999999999 59999999999998 599999999999999999999999999874
No 55
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=99.98 E-value=2.3e-30 Score=208.87 Aligned_cols=188 Identities=31% Similarity=0.513 Sum_probs=170.3
Q ss_pred CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425 1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK 80 (193)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~ 80 (193)
|||+++.+++.+ +++.+.+.|.+.+++++||+.++++|+.|+....+..+. ..+|.++|+|++|+|+.+|++++.++
T Consensus 1 m~a~~~~~~~~~--~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~V~~~G~~~~~~~ 77 (345)
T cd08260 1 MRAAVYEEFGEP--LEIREVPDPEPPPDGVVVEVEACGVCRSDWHGWQGHDPD-VTLPHVPGHEFAGVVVEVGEDVSRWR 77 (345)
T ss_pred CeeEEEecCCCC--cEEEEccCCCCCCCeEEEEEEEeeccHHHHHHhcCCCCC-CCCCeeeccceeEEEEEECCCCccCC
Confidence 999999988755 788899989999999999999999999999888887553 34578999999999999999999999
Q ss_pred CCCEEEE---------------------------EccCceeeeEEeecCC--ceEECCCCCCHHhHccCcchHHHHHHHH
Q 029425 81 VGDQVCA---------------------------LLGGGGYAEKVAVPAG--QVLPVPSGVSLKDAAAFPEVACTVWSTV 131 (193)
Q Consensus 81 ~G~~V~~---------------------------~~~~g~~~~~~~~~~~--~~~~~p~~~~~~~aa~~~~~~~~a~~~l 131 (193)
+||+|++ +.++|+|++|+.+++. .++++|+++++++++.++.++.+||+++
T Consensus 78 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l 157 (345)
T cd08260 78 VGDRVTVPFVLGCGTCPYCRAGDSNVCEHQVQPGFTHPGSFAEYVAVPRADVNLVRLPDDVDFVTAAGLGCRFATAFRAL 157 (345)
T ss_pred CCCEEEECCCCCCCCCccccCcCcccCCCCcccccCCCCcceeEEEcccccCceEECCCCCCHHHhhhhccchHHHHHHH
Confidence 9999986 3336899999999974 8999999999999999999999999998
Q ss_pred HHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425 132 FMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFG 192 (193)
Q Consensus 132 ~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~ 192 (193)
....++.++++++|+| .|.+|++++++++.+|++|+++++++++.+.++++|++.+++++
T Consensus 158 ~~~~~~~~~~~vlV~g-~g~vg~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~ 217 (345)
T cd08260 158 VHQARVKPGEWVAVHG-CGGVGLSAVMIASALGARVIAVDIDDDKLELARELGAVATVNAS 217 (345)
T ss_pred HHccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHhCCCEEEccc
Confidence 7788899999999999 59999999999999999999999999999999999999999875
No 56
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=99.98 E-value=2.3e-30 Score=206.87 Aligned_cols=189 Identities=27% Similarity=0.434 Sum_probs=168.1
Q ss_pred EEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCCC
Q 029425 2 KAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKV 81 (193)
Q Consensus 2 ~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~~ 81 (193)
||++++..+.|+.+++++.+.|.+.+++++||+.++++|++|+..+.|.+......|.++|||++|+|+. +++..|++
T Consensus 1 ~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~--~~~~~~~~ 78 (323)
T TIGR02823 1 KALVVEKEDGKVSAQVETLDLSDLPEGDVLIKVAYSSLNYKDALAITGKGGVVRSYPMIPGIDAAGTVVS--SEDPRFRE 78 (323)
T ss_pred CeEEEccCCCCcceeEeecCCCCCCCCeEEEEEEEEEcCHHHHHHHcCCCCCCCCCCccceeeeEEEEEe--cCCCCCCC
Confidence 6899999888878999999999999999999999999999999988887643334588999999999988 55678999
Q ss_pred CCEEEEEc------cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhc--CCCCCC-eEEEEcCCchH
Q 029425 82 GDQVCALL------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTS--HLSPGE-SFLVHGGSSGI 152 (193)
Q Consensus 82 G~~V~~~~------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~--~~~~~~-~vli~ga~g~~ 152 (193)
||+|+++. .+|++++|+.++.+.++++|+++++++++.++..+.++|.++.... .+.+++ +++|+|++|.+
T Consensus 79 Gd~V~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~~~~~~~~~~~~~~~~vlI~g~~g~v 158 (323)
T TIGR02823 79 GDEVIVTGYGLGVSHDGGYSQYARVPADWLVPLPEGLSLREAMALGTAGFTAALSVMALERNGLTPEDGPVLVTGATGGV 158 (323)
T ss_pred CCEEEEccCCCCCCCCccceEEEEEchhheEECCCCCCHHHhhhhhhhHHHHHHHHHHhhhcCCCCCCceEEEEcCCcHH
Confidence 99999874 3689999999999999999999999999999999999998875443 378898 99999999999
Q ss_pred HHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425 153 GTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFG 192 (193)
Q Consensus 153 G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~ 192 (193)
|++++++|+++|++++++++++++.+.++++|++.+++++
T Consensus 159 g~~~~~la~~~G~~vi~~~~~~~~~~~~~~~g~~~~~~~~ 198 (323)
T TIGR02823 159 GSLAVAILSKLGYEVVASTGKAEEEDYLKELGASEVIDRE 198 (323)
T ss_pred HHHHHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcEEEccc
Confidence 9999999999999999999999999999999999888764
No 57
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.98 E-value=2.8e-30 Score=204.68 Aligned_cols=183 Identities=31% Similarity=0.444 Sum_probs=165.4
Q ss_pred CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425 1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK 80 (193)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~ 80 (193)
||++++.+++ |..+++++.+.|.+.++|++||+.++++|+.|....... ..|.++|+|++|+|+++|+++..|+
T Consensus 1 ~~~~~~~~~~-~~~~~~~~~~~p~~~~~ev~v~v~~~~i~~~d~~~~~~~-----~~~~~~g~e~~G~v~~~G~~v~~~~ 74 (305)
T cd08270 1 MRALVVDPDA-PLRLRLGEVPDPQPAPHEALVRVAAISLNRGELKFAAER-----PDGAVPGWDAAGVVERAAADGSGPA 74 (305)
T ss_pred CeEEEEccCC-CceeEEEecCCCCCCCCEEEEEEEEEecCHHHHHhhccC-----CCCCcccceeEEEEEEeCCCCCCCC
Confidence 8999998876 777888899999999999999999999999999876521 1257899999999999999999999
Q ss_pred CCCEEEEEccCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHH
Q 029425 81 VGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMG 160 (193)
Q Consensus 81 ~G~~V~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~ 160 (193)
+||+|+++..+|+|++|+.++.+.++++|++++++++++++..+.++|+++...... ++++++|+|++|.+|.++++++
T Consensus 75 ~Gd~V~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~ta~~~~~~~~~~-~~~~vli~g~~~~~g~~~~~~a 153 (305)
T cd08270 75 VGARVVGLGAMGAWAELVAVPTGWLAVLPDGVSFAQAATLPVAGVTALRALRRGGPL-LGRRVLVTGASGGVGRFAVQLA 153 (305)
T ss_pred CCCEEEEecCCcceeeEEEEchHHeEECCCCCCHHHHHHhHhHHHHHHHHHHHhCCC-CCCEEEEECCCcHHHHHHHHHH
Confidence 999999986679999999999999999999999999999999999999998666655 5999999999999999999999
Q ss_pred HHCCCEEEEEeCCcchHHHHhhcCCcEEec
Q 029425 161 KCQGVRVFVTAGLATRFILCQPFNIRVFIG 190 (193)
Q Consensus 161 ~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~ 190 (193)
+++|++++.+++++++.+.++++|++.+++
T Consensus 154 ~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~ 183 (305)
T cd08270 154 ALAGAHVVAVVGSPARAEGLRELGAAEVVV 183 (305)
T ss_pred HHcCCEEEEEeCCHHHHHHHHHcCCcEEEe
Confidence 999999999999999999999999876553
No 58
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.98 E-value=2.4e-30 Score=208.88 Aligned_cols=189 Identities=30% Similarity=0.431 Sum_probs=164.8
Q ss_pred CEEEEEcCCCCCCceEEEe-ecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCC-------------------CCCCCCC
Q 029425 1 MKAIVITQPGSPEVLQLQE-VEDPQIKDDEVLIKVEATALNRADTLQRKGSYPP-------------------PKGASPY 60 (193)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~-~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~-------------------~~~~p~~ 60 (193)
||++++..++.+..+.+.+ .+.|.+.+++++||+.++++|++|+..+.|.++. ..++|.+
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 80 (350)
T cd08274 1 MRAVLLTGHGGLDKLVYRDDVPVPTPAPGEVLIRVGACGVNNTDINTREGWYSTEVDGATDSTGAGEAGWWGGTLSFPRI 80 (350)
T ss_pred CeEEEEeccCCccceeecccCCCCCCCCCeEEEEEEeccCCHHHHHHhcCCCCCccccccccccccccccccCCCCCCcc
Confidence 8999999877666676654 3667789999999999999999999888775431 2346889
Q ss_pred CCcceEEEEEEecCCCCCCCCCCEEEEEc-------------------cCceeeeEEeecCCceEECCCCCCHHhHccCc
Q 029425 61 PGLECSGTILSVGKNVSRWKVGDQVCALL-------------------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFP 121 (193)
Q Consensus 61 lg~e~~G~V~~vG~~~~~~~~G~~V~~~~-------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~ 121 (193)
+|||++|+|+++|+++.+|++||+|+..+ .+|++++|+.++.+.++++|+++++.++++++
T Consensus 81 ~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~a~l~ 160 (350)
T cd08274 81 QGADIVGRVVAVGEGVDTARIGERVLVDPSIRDPPEDDPADIDYIGSERDGGFAEYTVVPAENAYPVNSPLSDVELATFP 160 (350)
T ss_pred cCCcceEEEEEeCCCCCCCCCCCEEEEecCcCCCCccccccccccCCCCCccceEEEEecHHHceeCCCCCCHHHHHhcc
Confidence 99999999999999999999999998742 24899999999999999999999999999999
Q ss_pred chHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecC
Q 029425 122 EVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGF 191 (193)
Q Consensus 122 ~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~ 191 (193)
.++.++|+++ ...+++++++++|+|++|.+|++++++++++|++++.+++++ +.+.++++|++.+++.
T Consensus 161 ~~~~ta~~~~-~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~~-~~~~~~~~g~~~~~~~ 228 (350)
T cd08274 161 CSYSTAENML-ERAGVGAGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGAA-KEEAVRALGADTVILR 228 (350)
T ss_pred cHHHHHHHHH-hhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCch-hhHHHHhcCCeEEEeC
Confidence 9999999988 778899999999999999999999999999999999888665 8888888998766654
No 59
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=99.98 E-value=9.7e-31 Score=210.82 Aligned_cols=188 Identities=34% Similarity=0.514 Sum_probs=168.3
Q ss_pred CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425 1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK 80 (193)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~ 80 (193)
|||++++.++ +..+++++.+.|.++++||+||+.++++|++|+....+.+. ...|.++|+|++|+|+.+|+++..|+
T Consensus 1 m~a~~~~~~~-~~~~~~~~~~~p~~~~~ev~i~v~~~~i~~~d~~~~~~~~~--~~~~~~~g~e~~G~v~~vG~~v~~~~ 77 (339)
T cd08249 1 QKAAVLTGPG-GGLLVVVDVPVPKPGPDEVLVKVKAVALNPVDWKHQDYGFI--PSYPAILGCDFAGTVVEVGSGVTRFK 77 (339)
T ss_pred CceEEeccCC-CCcccccCCCCCCCCCCEEEEEEEEEEcCchheeeeecccc--cCCCceeeeeeeEEEEEeCCCcCcCC
Confidence 8999999887 67799999999999999999999999999999887655431 12467899999999999999999999
Q ss_pred CCCEEEEEcc--------CceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCC----------CCCCe
Q 029425 81 VGDQVCALLG--------GGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHL----------SPGES 142 (193)
Q Consensus 81 ~G~~V~~~~~--------~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~----------~~~~~ 142 (193)
+||+|.++.. +|+|++|+.++.+.++++|+++++++++.++.++.++|+++....++ +++++
T Consensus 78 ~Gd~V~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~~~~~~~~~~~~~~ 157 (339)
T cd08249 78 VGDRVAGFVHGGNPNDPRNGAFQEYVVADADLTAKIPDNISFEEAATLPVGLVTAALALFQKLGLPLPPPKPSPASKGKP 157 (339)
T ss_pred CCCEEEEEeccccCCCCCCCcccceEEechhheEECCCCCCHHHceecchHHHHHHHHHhccccCCCCCCCCCCCCCCCE
Confidence 9999999853 48999999999999999999999999999999999999998666544 78999
Q ss_pred EEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425 143 FLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFG 192 (193)
Q Consensus 143 vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~ 192 (193)
++|+|++|.+|++++++++++|++++.++ ++++.+.++++|++++++++
T Consensus 158 vlI~ga~g~vg~~~~~~a~~~G~~v~~~~-~~~~~~~~~~~g~~~v~~~~ 206 (339)
T cd08249 158 VLIWGGSSSVGTLAIQLAKLAGYKVITTA-SPKNFDLVKSLGADAVFDYH 206 (339)
T ss_pred EEEEcChhHHHHHHHHHHHHcCCeEEEEE-CcccHHHHHhcCCCEEEECC
Confidence 99999999999999999999999999888 66899999999999999875
No 60
>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding
Probab=99.98 E-value=3.3e-30 Score=204.50 Aligned_cols=192 Identities=55% Similarity=0.930 Sum_probs=175.4
Q ss_pred CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425 1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK 80 (193)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~ 80 (193)
||++++.+++.+..+++.+.+.|.+.+++++||+.++++|+.|+....+.++.....|.++|+|++|+|.++|+++..++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vg~~~~~~~ 80 (323)
T cd05276 1 MKAIVIKEPGGPEVLELGEVPKPAPGPGEVLIRVAAAGVNRADLLQRQGLYPPPPGASDILGLEVAGVVVAVGPGVTGWK 80 (323)
T ss_pred CeEEEEecCCCcccceEEecCCCCCCCCEEEEEEEEeecCHHHHHHhCCCCCCCCCCCCcccceeEEEEEeeCCCCCCCC
Confidence 89999998887777888888888889999999999999999999888776655455688999999999999999999999
Q ss_pred CCCEEEEEccCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHH
Q 029425 81 VGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMG 160 (193)
Q Consensus 81 ~G~~V~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~ 160 (193)
+||+|.++..+|+|++|+.++++.++++|+++++.+++.++.++.++|+++.....++++++++|+|+++.+|+++++++
T Consensus 81 ~Gd~V~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~vlv~g~~~~ig~~~~~~~ 160 (323)
T cd05276 81 VGDRVCALLAGGGYAEYVVVPAGQLLPVPEGLSLVEAAALPEVFFTAWQNLFQLGGLKAGETVLIHGGASGVGTAAIQLA 160 (323)
T ss_pred CCCEEEEecCCCceeEEEEcCHHHhccCCCCCCHHHHhhchhHHHHHHHHHHHhcCCCCCCEEEEEcCcChHHHHHHHHH
Confidence 99999998767999999999999999999999999999999999999999877788999999999999999999999999
Q ss_pred HHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425 161 KCQGVRVFVTAGLATRFILCQPFNIRVFIGFG 192 (193)
Q Consensus 161 ~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~ 192 (193)
+..|++++++.+++++.+.++++|++.+++++
T Consensus 161 ~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~ 192 (323)
T cd05276 161 KALGARVIATAGSEEKLEACRALGADVAINYR 192 (323)
T ss_pred HHcCCEEEEEcCCHHHHHHHHHcCCCEEEeCC
Confidence 99999999999999999999889988887754
No 61
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=99.97 E-value=3.1e-30 Score=208.52 Aligned_cols=189 Identities=29% Similarity=0.399 Sum_probs=168.0
Q ss_pred CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCC-----------CCCCCCCCCcceEEEE
Q 029425 1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPP-----------PKGASPYPGLECSGTI 69 (193)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~-----------~~~~p~~lg~e~~G~V 69 (193)
|||+++..++.+ +++++.+.|+++++|++||+.++++|++|+..+.+.++. ....|.++|+|++|+|
T Consensus 1 ~~a~~~~~~~~~--~~~~~~~~p~~~~~ev~V~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V 78 (350)
T cd08240 1 MKAAAVVEPGKP--LEEVEIDTPKPPGTEVLVKVTACGVCHSDLHIWDGGYDLGGGKTMSLDDRGVKLPLVLGHEIVGEV 78 (350)
T ss_pred CeeEEeccCCCC--ceEEecCCCCCCCCeEEEEEEEEecCchhHHHHcCCCCccccccccccccCCCCCcccccceeEEE
Confidence 899999887655 788899999999999999999999999999888775432 2234678999999999
Q ss_pred EEecCCCCCCCCCCEEEEEc---------------------------cCceeeeEEeecCCceEECCCCCCHHhHccCcc
Q 029425 70 LSVGKNVSRWKVGDQVCALL---------------------------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPE 122 (193)
Q Consensus 70 ~~vG~~~~~~~~G~~V~~~~---------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~ 122 (193)
+++|+++..+++||+|++++ ..|++++|+.++.+.++++|+++++.+++.+..
T Consensus 79 ~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~s~~~aa~l~~ 158 (350)
T cd08240 79 VAVGPDAADVKVGDKVLVYPWIGCGECPVCLAGDENLCAKGRALGIFQDGGYAEYVIVPHSRYLVDPGGLDPALAATLAC 158 (350)
T ss_pred EeeCCCCCCCCCCCEEEECCcCCCCCChHHHCcCcccCCCCCceeeeccCcceeeEEecHHHeeeCCCCCCHHHeehhhc
Confidence 99999999999999998762 358899999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425 123 VACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQPFNIRVFIGFG 192 (193)
Q Consensus 123 ~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~~~G~~~~~~~~ 192 (193)
.+.+||+++.....++++++++|+| +|.+|++++|+|+++|+ +|+++..++++.+.++++|++.+++++
T Consensus 159 ~~~tA~~~~~~~~~~~~~~~vlI~g-~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~ 228 (350)
T cd08240 159 SGLTAYSAVKKLMPLVADEPVVIIG-AGGLGLMALALLKALGPANIIVVDIDEAKLEAAKAAGADVVVNGS 228 (350)
T ss_pred hhhhHHHHHHhcccCCCCCEEEEEC-CcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCcEEecCC
Confidence 9999999997777777899999997 49999999999999999 788998899999999999999888765
No 62
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=99.97 E-value=5.7e-30 Score=203.45 Aligned_cols=192 Identities=35% Similarity=0.537 Sum_probs=175.0
Q ss_pred CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425 1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK 80 (193)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~ 80 (193)
||++++..++.+..+++.+.+.|.+.+++++|++.++++|+.|+....+.+......|.++|||++|+|.++|+++.+|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~ 80 (325)
T cd08253 1 MRAIRYHEFGAPDVLRLGDLPVPTPGPGEVLVRVHASGVNPVDTYIRAGAYPGLPPLPYVPGSDGAGVVEAVGEGVDGLK 80 (325)
T ss_pred CceEEEcccCCcccceeeecCCCCCCCCEEEEEEEEEecChhHhhhccCCCCCCCCCCeecccceEEEEEeeCCCCCCCC
Confidence 89999998776667888999999999999999999999999999888776554445688999999999999999999999
Q ss_pred CCCEEEEEc-----cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHH
Q 029425 81 VGDQVCALL-----GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTF 155 (193)
Q Consensus 81 ~G~~V~~~~-----~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~ 155 (193)
+||+|.++. ..|++++|+.++++.++++|+++++.+++.++.++.++|+++....+++++++++|+|+++.+|++
T Consensus 81 ~Gd~v~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~~~~g~~ 160 (325)
T cd08253 81 VGDRVWLTNLGWGRRQGTAAEYVVVPADQLVPLPDGVSFEQGAALGIPALTAYRALFHRAGAKAGETVLVHGGSGAVGHA 160 (325)
T ss_pred CCCEEEEeccccCCCCcceeeEEEecHHHcEeCCCCCCHHHHhhhhhHHHHHHHHHHHHhCCCCCCEEEEEcCCchHHHH
Confidence 999999885 258899999999999999999999999999999999999999887899999999999999999999
Q ss_pred HHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425 156 AIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFG 192 (193)
Q Consensus 156 ~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~ 192 (193)
++++++.+|++|+++++++++.+.++++|++.++++.
T Consensus 161 ~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~ 197 (325)
T cd08253 161 AVQLARWAGARVIATASSAEGAELVRQAGADAVFNYR 197 (325)
T ss_pred HHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeCC
Confidence 9999999999999999999999999989998888754
No 63
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=99.97 E-value=6e-30 Score=205.85 Aligned_cols=184 Identities=33% Similarity=0.475 Sum_probs=164.3
Q ss_pred CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425 1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK 80 (193)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~ 80 (193)
|||+++++++ .+++.+.+.|.+.++|++||+.++++|+.|+....+.++.. .+|.++|+|++|+|+++|++++.|+
T Consensus 1 ~~a~~~~~~~---~~~~~~~~~~~~~~~~v~v~v~~~~l~~~d~~~~~~~~~~~-~~~~~~g~e~~G~V~~~G~~v~~~~ 76 (337)
T cd08261 1 MKALVCEKPG---RLEVVDIPEPVPGAGEVLVRVKRVGICGSDLHIYHGRNPFA-SYPRILGHELSGEVVEVGEGVAGLK 76 (337)
T ss_pred CeEEEEeCCC---ceEEEECCCCCCCCCeEEEEEEEEeEcccChHHHcCCCCcC-CCCcccccccEEEEEEeCCCCCCCC
Confidence 8999998764 48899999999999999999999999999998887765443 3477899999999999999999999
Q ss_pred CCCEEEE---------------------------EccCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHH
Q 029425 81 VGDQVCA---------------------------LLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFM 133 (193)
Q Consensus 81 ~G~~V~~---------------------------~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~ 133 (193)
+||+|++ +...|+|++|+.++++ ++++|+++++++++.+ ..+.++++++ .
T Consensus 77 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~-~~~~p~~~~~~~aa~~-~~~~~a~~~~-~ 153 (337)
T cd08261 77 VGDRVVVDPYISCGECYACRKGRPNCCENLQVLGVHRDGGFAEYIVVPAD-ALLVPEGLSLDQAALV-EPLAIGAHAV-R 153 (337)
T ss_pred CCCEEEECCCCCCCCChhhhCcCcccCCCCCeeeecCCCcceeEEEechh-eEECCCCCCHHHhhhh-chHHHHHHHH-H
Confidence 9999987 2236899999999999 9999999999998866 6778888888 7
Q ss_pred hcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425 134 TSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFG 192 (193)
Q Consensus 134 ~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~ 192 (193)
..++++++++||+|+ |.+|.+++|+|+.+|++|+++++++++.++++++|++++++++
T Consensus 154 ~~~l~~g~~vLI~g~-g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~~g~~~v~~~~ 211 (337)
T cd08261 154 RAGVTAGDTVLVVGA-GPIGLGVIQVAKARGARVIVVDIDDERLEFARELGADDTINVG 211 (337)
T ss_pred hcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHhCCCEEecCc
Confidence 788999999999974 9999999999999999999999999999999999999999875
No 64
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=99.97 E-value=1.7e-30 Score=206.97 Aligned_cols=173 Identities=21% Similarity=0.274 Sum_probs=142.4
Q ss_pred CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCC-hhhhhhhcCCCCCC--CCCCCCCCcceEEEEEEecCCCC
Q 029425 1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALN-RADTLQRKGSYPPP--KGASPYPGLECSGTILSVGKNVS 77 (193)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~-~~d~~~~~~~~~~~--~~~p~~lg~e~~G~V~~vG~~~~ 77 (193)
||++++..++ .+++++.+.|+|+++||+|||+++++| ++|+..+.|.++.. ..+|.++|||++|+|+++|+++
T Consensus 2 ~ka~~~~~~~---~l~~~e~~~p~~~~~evlVkv~~~gi~~~~D~~~~~G~~~~~~~~~~P~i~GhE~~G~V~~vG~~v- 77 (308)
T TIGR01202 2 TQAIVLSGPN---QIELREVTLTPPSPGDLVVEIWYSGISTGTEKLFWNGLMPPFPGMGYPLVPGYESVGRVVEAGPDT- 77 (308)
T ss_pred ceEEEEeCCC---eEEEEEecCCCCCCCeEEEEEEEEeeccCchhHHhcCCCCCCCCCCCCccCcceeEEEEEEecCCC-
Confidence 7899998644 499999999999999999999999996 69998888876432 2469999999999999999998
Q ss_pred CCCCCCEEEEEc---------cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcC
Q 029425 78 RWKVGDQVCALL---------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGG 148 (193)
Q Consensus 78 ~~~~G~~V~~~~---------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga 148 (193)
.|++||+|+..+ .+|+|++|+.++++.++++|++++++. +.+ .+..++|+++.. . ..++++++|+|+
T Consensus 78 ~~~vGdrV~~~~~~c~~~~~~~~G~~aey~~v~~~~~~~ip~~~~~~~-a~~-~~~~~a~~~~~~-~-~~~~~~vlV~G~ 153 (308)
T TIGR01202 78 GFRPGDRVFVPGSNCYEDVRGLFGGASKRLVTPASRVCRLDPALGPQG-ALL-ALAATARHAVAG-A-EVKVLPDLIVGH 153 (308)
T ss_pred CCCCCCEEEEeCccccccccccCCcccceEEcCHHHceeCCCCCCHHH-Hhh-hHHHHHHHHHHh-c-ccCCCcEEEECC
Confidence 699999998642 159999999999999999999999764 444 457899999854 3 346889999986
Q ss_pred CchHHHHHHHHHHHCCCE-EEEEeCCcchHHHHhh
Q 029425 149 SSGIGTFAIQMGKCQGVR-VFVTAGLATRFILCQP 182 (193)
Q Consensus 149 ~g~~G~~~i~~~~~~g~~-v~~~~~~~~~~~~~~~ 182 (193)
|.+|++++|+|+.+|++ |+++..++++++.+++
T Consensus 154 -G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~ 187 (308)
T TIGR01202 154 -GTLGRLLARLTKAAGGSPPAVWETNPRRRDGATG 187 (308)
T ss_pred -CHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhh
Confidence 99999999999999997 4455556666655543
No 65
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=99.97 E-value=6.5e-30 Score=205.22 Aligned_cols=191 Identities=32% Similarity=0.436 Sum_probs=172.0
Q ss_pred CEEEEEcCCCCCC---ceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCC
Q 029425 1 MKAIVITQPGSPE---VLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVS 77 (193)
Q Consensus 1 m~a~~~~~~~~~~---~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~ 77 (193)
|||+++++++++. .+.+++.+.|.+.+++++||+.++++|+.|+....+..+. ...|.++|+|++|+|+.+|+++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~-~~~~~~~g~e~~G~v~~~G~~v~ 79 (336)
T cd08252 1 MKAIGFTQPLPITDPDSLIDIELPKPVPGGRDLLVRVEAVSVNPVDTKVRAGGAPV-PGQPKILGWDASGVVEAVGSEVT 79 (336)
T ss_pred CceEEecCCCCCCcccceeEccCCCCCCCCCEEEEEEEEEEcCHHHHHHHcCCCCC-CCCCcccccceEEEEEEcCCCCC
Confidence 8999999988765 4777788888889999999999999999999887776542 23467899999999999999999
Q ss_pred CCCCCCEEEEEc---cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCC-----CCeEEEEcCC
Q 029425 78 RWKVGDQVCALL---GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSP-----GESFLVHGGS 149 (193)
Q Consensus 78 ~~~~G~~V~~~~---~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~-----~~~vli~ga~ 149 (193)
.|++||+|..+. .+|+|++|+.++.+.++++|+++++++++.++..+.++|+++.....+++ +++++|+|++
T Consensus 80 ~~~~Gd~V~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~g~~ 159 (336)
T cd08252 80 LFKVGDEVYYAGDITRPGSNAEYQLVDERIVGHKPKSLSFAEAAALPLTSLTAWEALFDRLGISEDAENEGKTLLIIGGA 159 (336)
T ss_pred CCCCCCEEEEcCCCCCCccceEEEEEchHHeeeCCCCCCHHHhhhhhhHHHHHHHHHHHhcCCCCCcCCCCCEEEEEcCC
Confidence 999999999864 36899999999999999999999999999999999999999877788877 9999999988
Q ss_pred chHHHHHHHHHHHCC-CEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425 150 SGIGTFAIQMGKCQG-VRVFVTAGLATRFILCQPFNIRVFIGFG 192 (193)
Q Consensus 150 g~~G~~~i~~~~~~g-~~v~~~~~~~~~~~~~~~~G~~~~~~~~ 192 (193)
|.+|++++++++.+| ++|+++++++++.++++++|++.+++++
T Consensus 160 g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~ 203 (336)
T cd08252 160 GGVGSIAIQLAKQLTGLTVIATASRPESIAWVKELGADHVINHH 203 (336)
T ss_pred chHHHHHHHHHHHcCCcEEEEEcCChhhHHHHHhcCCcEEEeCC
Confidence 999999999999999 9999999999999999999999998864
No 66
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=99.97 E-value=8.6e-30 Score=203.85 Aligned_cols=188 Identities=33% Similarity=0.468 Sum_probs=169.4
Q ss_pred CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425 1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK 80 (193)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~ 80 (193)
|||+++..++ ..+.+.+.+.|.+.+++++|++.++++|++|+....+.++. ...|.++|+|++|+|+.+|+++..++
T Consensus 1 m~a~~~~~~~--~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~v~~~G~~v~~~~ 77 (332)
T cd08259 1 MKAAILHKPN--KPLQIEEVPDPEPGPGEVLIKVKAAGVCYRDLLFWKGFFPR-GKYPLILGHEIVGTVEEVGEGVERFK 77 (332)
T ss_pred CeEEEEecCC--CceEEEEccCCCCCCCeEEEEEEEEecchhhhHHhcCCCCC-CCCCeeccccceEEEEEECCCCccCC
Confidence 8999998743 34888899999999999999999999999999988886653 33578999999999999999999999
Q ss_pred CCCEEEEEc---------------------------cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHH
Q 029425 81 VGDQVCALL---------------------------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFM 133 (193)
Q Consensus 81 ~G~~V~~~~---------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~ 133 (193)
+||+|+++. ..|+|++|+.++.+.++++|+++++++++.++.++.++|+++..
T Consensus 78 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~l~~ 157 (332)
T cd08259 78 PGDRVILYYYIPCGKCEYCLSGEENLCRNRAEYGEEVDGGFAEYVKVPERSLVKLPDNVSDESAALAACVVGTAVHALKR 157 (332)
T ss_pred CCCEEEECCCCCCcCChhhhCCCcccCCCccccccccCCeeeeEEEechhheEECCCCCCHHHHhhhccHHHHHHHHHHH
Confidence 999999874 15899999999999999999999999999999999999999966
Q ss_pred hcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425 134 TSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFG 192 (193)
Q Consensus 134 ~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~ 192 (193)
.+++++++++|+|++|.+|++++++++.+|++++.+++++++.+.++++|++.+++++
T Consensus 158 -~~~~~~~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (332)
T cd08259 158 -AGVKKGDTVLVTGAGGGVGIHAIQLAKALGARVIAVTRSPEKLKILKELGADYVIDGS 215 (332)
T ss_pred -hCCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHcCCcEEEecH
Confidence 8899999999999999999999999999999999999999999999889988877654
No 67
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=99.97 E-value=6.6e-30 Score=210.17 Aligned_cols=192 Identities=27% Similarity=0.448 Sum_probs=167.4
Q ss_pred CEEEEEcC--CCCC-CceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCC---------CCCCC-CCCCcceEE
Q 029425 1 MKAIVITQ--PGSP-EVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPP---------PKGAS-PYPGLECSG 67 (193)
Q Consensus 1 m~a~~~~~--~~~~-~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~---------~~~~p-~~lg~e~~G 67 (193)
|||+++.. +++| ..+++.+.+.|.+.+++++||+.++++|.+|.....+.... ....| .++|||++|
T Consensus 8 ~~a~~~~~~~~~~~~~~~~~~~~~~p~l~~~evlV~v~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~G~e~~G 87 (398)
T TIGR01751 8 MYAFAIREERDGDPRQAIQLEVVPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAFLRKYGRDDLPFHIIGSDASG 87 (398)
T ss_pred hhheEEecccCCCcccceEEeecCCCCCCCCeEEEEEEEEecCchhhhhhcCCccchhhhhcccCCCCCCceecccceEE
Confidence 89999965 6665 56899999999999999999999999999998766553210 00123 379999999
Q ss_pred EEEEecCCCCCCCCCCEEEEEc----------------------------cCceeeeEEeecCCceEECCCCCCHHhHcc
Q 029425 68 TILSVGKNVSRWKVGDQVCALL----------------------------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAA 119 (193)
Q Consensus 68 ~V~~vG~~~~~~~~G~~V~~~~----------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~ 119 (193)
+|+++|+++..+++||+|+..+ .+|+|++|+.++.+.++++|+++++++++.
T Consensus 88 ~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~ae~~~v~~~~~~~vP~~l~~~~aa~ 167 (398)
T TIGR01751 88 VVWRVGPGVTRWKVGDEVVASCLQVDLTAPDGRVGDPMLSSEQRIWGYETNFGSFAEFALVKDYQLMPKPKHLTWEEAAC 167 (398)
T ss_pred EEEEeCCCCCCCCCCCEEEEccccccCCchhhccCccccccccccccccCCCccceEEEEechHHeEECCCCCCHHHHhh
Confidence 9999999999999999998764 248999999999999999999999999999
Q ss_pred CcchHHHHHHHHHH--hcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425 120 FPEVACTVWSTVFM--TSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFG 192 (193)
Q Consensus 120 ~~~~~~~a~~~l~~--~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~ 192 (193)
+...+.++|+++.. ..+++++++++|+|++|.+|++++++++++|++++++++++++.+.++++|++.++|++
T Consensus 168 ~~~~~~ta~~al~~~~~~~~~~g~~vlV~Ga~g~vG~~ai~~ak~~G~~vi~~~~~~~~~~~~~~~g~~~~v~~~ 242 (398)
T TIGR01751 168 PGLTGATAYRQLVGWNPATVKPGDNVLIWGAAGGLGSYATQLARAGGGNPVAVVSSPEKAEYCRELGAEAVIDRN 242 (398)
T ss_pred ccchHHHHHHHHhhhhccCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCCEEecCC
Confidence 99999999999854 46789999999999999999999999999999999999999999999999999999874
No 68
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.97 E-value=8.9e-30 Score=202.54 Aligned_cols=187 Identities=35% Similarity=0.571 Sum_probs=168.6
Q ss_pred CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425 1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK 80 (193)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~ 80 (193)
||++++...+.+..+++.+.+.|.+.++|++||+.++++|+.|+....+..+. ...|.++|+|++|+|+++|+ ..++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~-~~~~~~~g~e~~G~v~~vG~--~~~~ 77 (320)
T cd08243 1 MKAIVIEQPGGPEVLKLREIPIPEPKPGWVLIRVKAFGLNRSEIFTRQGHSPS-VKFPRVLGIEAVGEVEEAPG--GTFT 77 (320)
T ss_pred CeEEEEcCCCCccceEEeecCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCC-CCCCccccceeEEEEEEecC--CCCC
Confidence 89999998777667888888888889999999999999999999888776542 23478899999999999995 5799
Q ss_pred CCCEEEEEcc------CceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHH
Q 029425 81 VGDQVCALLG------GGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGT 154 (193)
Q Consensus 81 ~G~~V~~~~~------~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~ 154 (193)
+||+|+++.. +|+|++|+.++...++++|+++++++++.++.++.++|+++.....++++++++|+|++|.+|+
T Consensus 78 ~Gd~V~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~ga~g~~g~ 157 (320)
T cd08243 78 PGQRVATAMGGMGRTFDGSYAEYTLVPNEQVYAIDSDLSWAELAALPETYYTAWGSLFRSLGLQPGDTLLIRGGTSSVGL 157 (320)
T ss_pred CCCEEEEecCCCCCCCCcccceEEEcCHHHcEeCCCCCCHHHHHhcchHHHHHHHHHHHhcCCCCCCEEEEEcCCChHHH
Confidence 9999998742 4889999999999999999999999999999999999999988888999999999999999999
Q ss_pred HHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEec
Q 029425 155 FAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIG 190 (193)
Q Consensus 155 ~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~ 190 (193)
+++++|+++|++|+.++.++++.+.++++|++++++
T Consensus 158 ~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~ 193 (320)
T cd08243 158 AALKLAKALGATVTATTRSPERAALLKELGADEVVI 193 (320)
T ss_pred HHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEEe
Confidence 999999999999999999999999999999988874
No 69
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=99.97 E-value=5.4e-30 Score=206.60 Aligned_cols=186 Identities=28% Similarity=0.421 Sum_probs=166.7
Q ss_pred CEEEEEcCCCCCCceEEEeecCCCC-CCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCC
Q 029425 1 MKAIVITQPGSPEVLQLQEVEDPQI-KDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRW 79 (193)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~-~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~ 79 (193)
||++++.+++. +++.+.+.|.+ .+++++||+.++++|++|+..+.+.++. .++|.++|+|++|+|+++|+++.++
T Consensus 1 ~ka~~~~~~~~---~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~V~~vG~~v~~~ 76 (347)
T cd05278 1 MKALVYLGPGK---IGLEEVPDPKIQGPHDAIVRVTATSICGSDLHIYRGGVPG-AKHGMILGHEFVGEVVEVGSDVKRL 76 (347)
T ss_pred CceEEEecCCc---eEEEEcCCCCCCCCCeEEEEEEEEEechhhHHHHcCCCCC-CCCCceeccceEEEEEEECCCcccc
Confidence 89999997654 78889998989 9999999999999999999988887654 3458899999999999999999999
Q ss_pred CCCCEEEEE------------------------------ccCceeeeEEeecCC--ceEECCCCCCHHhHccCcchHHHH
Q 029425 80 KVGDQVCAL------------------------------LGGGGYAEKVAVPAG--QVLPVPSGVSLKDAAAFPEVACTV 127 (193)
Q Consensus 80 ~~G~~V~~~------------------------------~~~g~~~~~~~~~~~--~~~~~p~~~~~~~aa~~~~~~~~a 127 (193)
++||+|... ..+|+|++|+.++++ .++++|+++++++++.++.++++|
T Consensus 77 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~lP~~~~~~~aa~l~~~~~ta 156 (347)
T cd05278 77 KPGDRVSVPCITFCGRCRFCRRGYHAHCENGLWGWKLGNRIDGGQAEYVRVPYADMNLAKIPDGLPDEDALMLSDILPTG 156 (347)
T ss_pred CCCCEEEecCCCCCCCChhHhCcCcccCcCCCcccccccCCCCeeeEEEEecchhCeEEECCCCCCHHHHhhhcchhhhe
Confidence 999999862 135899999999987 899999999999999999999999
Q ss_pred HHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425 128 WSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQPFNIRVFIGFG 192 (193)
Q Consensus 128 ~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~~~G~~~~~~~~ 192 (193)
|+++ ...+++++++++|.|+ |.+|++++|+|+.+|+ +++.+.+++++.+.++++|++.+++++
T Consensus 157 ~~~~-~~~~~~~~~~VlI~g~-g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~ 220 (347)
T cd05278 157 FHGA-ELAGIKPGSTVAVIGA-GPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGATDIINPK 220 (347)
T ss_pred eehh-hhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCCcEEEcCC
Confidence 9998 6788999999999875 9999999999999997 888888888899999999999998875
No 70
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=99.97 E-value=4.7e-30 Score=211.78 Aligned_cols=189 Identities=24% Similarity=0.320 Sum_probs=153.4
Q ss_pred CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhh-cCCCC-C----CCCCCCCCCcceEEEEEEecC
Q 029425 1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQR-KGSYP-P----PKGASPYPGLECSGTILSVGK 74 (193)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~-~~~~~-~----~~~~p~~lg~e~~G~V~~vG~ 74 (193)
||++++..++ .+++++.+.|.++++||+|||.++++|++|++.+ .+... . ...+|.++|||++|+|+++|+
T Consensus 3 ~~a~~~~~~~---~l~~~e~p~P~~~~~eVlVkV~a~gic~sD~~~~~~g~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~ 79 (410)
T cd08238 3 TKAWRMYGKG---DLRLEKFELPEIADDEILVRVISDSLCFSTWKLALQGSDHKKVPNDLAKEPVILGHEFAGTILKVGK 79 (410)
T ss_pred cEEEEEEcCC---ceEEEecCCCCCCCCeEEEEEEEeccCCCCHHHHhcCCccccCcccccCCCceeccccEEEEEEeCC
Confidence 6788888765 3899999999999999999999999999999876 44321 1 013588999999999999999
Q ss_pred CCC-CCCCCCEEEEEc----------------cCceeeeEEeecCC----ceEECCCCCCHHhHccCcchH--HHHHHHH
Q 029425 75 NVS-RWKVGDQVCALL----------------GGGGYAEKVAVPAG----QVLPVPSGVSLKDAAAFPEVA--CTVWSTV 131 (193)
Q Consensus 75 ~~~-~~~~G~~V~~~~----------------~~g~~~~~~~~~~~----~~~~~p~~~~~~~aa~~~~~~--~~a~~~l 131 (193)
++. .|++||+|+..+ .+|+|++|+.++++ .++++|+++++++++.+.... .+++.++
T Consensus 80 ~v~~~~~vGdrV~~~~~~~c~~~~~c~~~g~~~~G~~aey~~v~~~~~~~~~~~lP~~l~~~~aal~epl~~~~~~~~a~ 159 (410)
T cd08238 80 KWQGKYKPGQRFVIQPALILPDGPSCPGYSYTYPGGLATYHIIPNEVMEQDCLLIYEGDGYAEASLVEPLSCVIGAYTAN 159 (410)
T ss_pred CccCCCCCCCEEEEcCCcCCCCCCCCCCccccCCCcceEEEEecHHhccCCeEECCCCCCHHHHhhcchHHHHHHHhhhc
Confidence 997 699999998752 25899999999987 589999999999887542211 2233332
Q ss_pred --------HHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC---EEEEEeCCcchHHHHhhc--------CCc-EEecC
Q 029425 132 --------FMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV---RVFVTAGLATRFILCQPF--------NIR-VFIGF 191 (193)
Q Consensus 132 --------~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~---~v~~~~~~~~~~~~~~~~--------G~~-~~~~~ 191 (193)
....++++|++++|+|++|.+|++++|+|+++|+ +|++++++++|++.++++ |++ .++|+
T Consensus 160 ~~~~~~~~~~~~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~ 239 (410)
T cd08238 160 YHLQPGEYRHRMGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIELLYVNP 239 (410)
T ss_pred ccccccchhhhcCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceEEEECC
Confidence 2456789999999999889999999999999864 799999999999999997 776 57776
Q ss_pred C
Q 029425 192 G 192 (193)
Q Consensus 192 ~ 192 (193)
+
T Consensus 240 ~ 240 (410)
T cd08238 240 A 240 (410)
T ss_pred C
Confidence 3
No 71
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.97 E-value=1.5e-29 Score=202.65 Aligned_cols=191 Identities=32% Similarity=0.550 Sum_probs=172.8
Q ss_pred CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425 1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK 80 (193)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~ 80 (193)
|||++++..+.+..+++++.+.|.++++|++||+.++++|++|+....+.++.....|.++|||++|+|+++|+++.+++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~ 80 (336)
T cd08276 1 MKAWRLSGGGGLDNLKLVEEPVPEPGPGEVLVRVHAVSLNYRDLLILNGRYPPPVKDPLIPLSDGAGEVVAVGEGVTRFK 80 (336)
T ss_pred CeEEEEeccCCCcceEEEeccCCCCCCCeEEEEEEEEecCHHHHHHhcCCCCCCCCCCcccccceeEEEEEeCCCCcCCC
Confidence 99999998766667888888888899999999999999999999988877654444678999999999999999999999
Q ss_pred CCCEEEEEcc---------------------CceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCC
Q 029425 81 VGDQVCALLG---------------------GGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSP 139 (193)
Q Consensus 81 ~G~~V~~~~~---------------------~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~ 139 (193)
+||+|..... +|+|++|+.++.+.++++|+++++.+++.++.++.++|+++.....+++
T Consensus 81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~a~~~~~~~~~a~~~l~~~~~~~~ 160 (336)
T cd08276 81 VGDRVVPTFFPNWLDGPPTAEDEASALGGPIDGVLAEYVVLPEEGLVRAPDHLSFEEAATLPCAGLTAWNALFGLGPLKP 160 (336)
T ss_pred CCCEEEEecccccccccccccccccccccccCceeeeEEEecHHHeEECCCCCCHHHhhhhhHHHHHHHHHHHhhcCCCC
Confidence 9999998741 5889999999999999999999999999999999999999988889999
Q ss_pred CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425 140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFG 192 (193)
Q Consensus 140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~ 192 (193)
+++++|+| +|.+|++++++++++|++|++++.++++.+.++++|++.+++++
T Consensus 161 g~~vli~g-~g~~g~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~ 212 (336)
T cd08276 161 GDTVLVQG-TGGVSLFALQFAKAAGARVIATSSSDEKLERAKALGADHVINYR 212 (336)
T ss_pred CCEEEEEC-CcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEcCC
Confidence 99999996 59999999999999999999999999999999999999988764
No 72
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=99.97 E-value=1.3e-29 Score=203.12 Aligned_cols=189 Identities=30% Similarity=0.414 Sum_probs=169.6
Q ss_pred CEEEEEcCCCCC--CceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCC
Q 029425 1 MKAIVITQPGSP--EVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSR 78 (193)
Q Consensus 1 m~a~~~~~~~~~--~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~ 78 (193)
||++++.+.+.+ ..+++++.+.|.+.++||+||+.++++|++|+....|.++. ...|.++|+|++|+|+++|+++.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~irv~~~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~V~~vG~~v~~ 79 (329)
T cd08298 1 MKAMVLEKPGPIEENPLRLTEVPVPEPGPGEVLIKVEACGVCRTDLHIVEGDLPP-PKLPLIPGHEIVGRVEAVGPGVTR 79 (329)
T ss_pred CeEEEEecCCCCCCCCceEEeccCCCCCCCEEEEEEEEEeccHHHHHHHhCCCCC-CCCCccccccccEEEEEECCCCCC
Confidence 899999988753 35778888888899999999999999999999988887654 335789999999999999999999
Q ss_pred CCCCCEEEEEc----------------------------cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHH
Q 029425 79 WKVGDQVCALL----------------------------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWST 130 (193)
Q Consensus 79 ~~~G~~V~~~~----------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~ 130 (193)
+++||+|...+ .+|+|++|+.++.+.++++|+++++.+++.+++++.++|++
T Consensus 80 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~ta~~~ 159 (329)
T cd08298 80 FSVGDRVGVPWLGSTCGECRYCRSGRENLCDNARFTGYTVDGGYAEYMVADERFAYPIPEDYDDEEAAPLLCAGIIGYRA 159 (329)
T ss_pred CcCCCEEEEeccCCCCCCChhHhCcChhhCCCccccccccCCceEEEEEecchhEEECCCCCCHHHhhHhhhhhHHHHHH
Confidence 99999997621 25889999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425 131 VFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFG 192 (193)
Q Consensus 131 l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~ 192 (193)
+ ...+++++++++|+|+ |.+|+++++++++.|++|+.+++++++.+.++++|++.+++++
T Consensus 160 ~-~~~~~~~~~~vlV~g~-g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~ 219 (329)
T cd08298 160 L-KLAGLKPGQRLGLYGF-GASAHLALQIARYQGAEVFAFTRSGEHQELARELGADWAGDSD 219 (329)
T ss_pred H-HhhCCCCCCEEEEECC-cHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHHhCCcEEeccC
Confidence 9 8899999999999974 9999999999999999999999999999999999998888764
No 73
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=99.97 E-value=8.8e-30 Score=207.29 Aligned_cols=187 Identities=29% Similarity=0.461 Sum_probs=168.5
Q ss_pred CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCC--
Q 029425 1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSR-- 78 (193)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~-- 78 (193)
|||+++++++.+ +.+++.+.|.++++||+||+.++++|+.|+....+.++. .+|.++|+|++|+|+.+|+++.+
T Consensus 1 ~~a~~~~~~~~~--~~~~~~~~~~~~~~~v~v~v~~~~l~~~d~~~~~~~~~~--~~p~~~g~e~~G~v~~vG~~~~~~~ 76 (367)
T cd08263 1 MKAAVLKGPNPP--LTIEEIPVPRPKEGEILIRVAACGVCHSDLHVLKGELPF--PPPFVLGHEISGEVVEVGPNVENPY 76 (367)
T ss_pred CeeEEEecCCCC--cEEEEeeCCCCCCCeEEEEEEEeeeCcchHHHhcCCCCC--CCCcccccccceEEEEeCCCCCCCC
Confidence 899999988643 778889999999999999999999999999988876643 45789999999999999999887
Q ss_pred -CCCCCEEEEE-------------------------------------------------ccCceeeeEEeecCCceEEC
Q 029425 79 -WKVGDQVCAL-------------------------------------------------LGGGGYAEKVAVPAGQVLPV 108 (193)
Q Consensus 79 -~~~G~~V~~~-------------------------------------------------~~~g~~~~~~~~~~~~~~~~ 108 (193)
|++||+|++. ...|++++|+.++.+.++++
T Consensus 77 ~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 156 (367)
T cd08263 77 GLSVGDRVVGSFIMPCGKCRYCARGKENLCEDFFAYNRLKGTLYDGTTRLFRLDGGPVYMYSMGGLAEYAVVPATALAPL 156 (367)
T ss_pred cCCCCCEEEEcCCCCCCCChHHhCcCcccCcCccccccccccccCCcccccccCCCccccccCCcceeEEEechhhEEEC
Confidence 9999999873 12588999999999999999
Q ss_pred CCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCE-EEEEeCCcchHHHHhhcCCcE
Q 029425 109 PSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVR-VFVTAGLATRFILCQPFNIRV 187 (193)
Q Consensus 109 p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~-v~~~~~~~~~~~~~~~~G~~~ 187 (193)
|+++++.+++.++.++++||+++.....++++++++|+| +|.+|++++++|+.+|++ +++++.++++.+.++++|++.
T Consensus 157 P~~is~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~g-~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~~g~~~ 235 (367)
T cd08263 157 PESLDYTESAVLGCAGFTAYGALKHAADVRPGETVAVIG-VGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKELGATH 235 (367)
T ss_pred CCCCCHHHHhHhcchHHHHHHHHHhcccCCCCCEEEEEC-CcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCce
Confidence 999999999999999999999998878889999999996 599999999999999997 888888999999999999999
Q ss_pred EecCC
Q 029425 188 FIGFG 192 (193)
Q Consensus 188 ~~~~~ 192 (193)
+++++
T Consensus 236 v~~~~ 240 (367)
T cd08263 236 TVNAA 240 (367)
T ss_pred EecCC
Confidence 99875
No 74
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=99.97 E-value=9.4e-30 Score=206.88 Aligned_cols=187 Identities=28% Similarity=0.402 Sum_probs=169.2
Q ss_pred CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425 1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK 80 (193)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~ 80 (193)
|||+++.+++.+ +++++.+.|.+++++++|++.++++|+.|+..+.+.++. .+|.++|+|++|+|+++|++++.|+
T Consensus 1 m~a~~~~~~~~~--~~~~~~~~p~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~--~~~~~~g~e~~G~V~~vG~~v~~~~ 76 (363)
T cd08279 1 MRAAVLHEVGKP--LEIEEVELDDPGPGEVLVRIAAAGLCHSDLHVVTGDLPA--PLPAVLGHEGAGVVEEVGPGVTGVK 76 (363)
T ss_pred CeEEEEecCCCC--ceEEEeeCCCCCCCeEEEEEEEeecCcHHHHHhcCCCCC--CCCccccccceEEEEEeCCCccccC
Confidence 899999988755 788899999999999999999999999999988887652 3577999999999999999999999
Q ss_pred CCCEEEEE-----------------------------------------------ccCceeeeEEeecCCceEECCCCCC
Q 029425 81 VGDQVCAL-----------------------------------------------LGGGGYAEKVAVPAGQVLPVPSGVS 113 (193)
Q Consensus 81 ~G~~V~~~-----------------------------------------------~~~g~~~~~~~~~~~~~~~~p~~~~ 113 (193)
+||+|++. ...|+|++|+.++++.++++|++++
T Consensus 77 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~ 156 (363)
T cd08279 77 PGDHVVLSWIPACGTCRYCSRGQPNLCDLGAGILGGQLPDGTRRFTADGEPVGAMCGLGTFAEYTVVPEASVVKIDDDIP 156 (363)
T ss_pred CCCEEEECCCCCCCCChhhcCCCcccCcccccccccccCCCcccccccCccccccccCccceeeEEeccccEEECCCCCC
Confidence 99999883 1358899999999999999999999
Q ss_pred HHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCE-EEEEeCCcchHHHHhhcCCcEEecCC
Q 029425 114 LKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVR-VFVTAGLATRFILCQPFNIRVFIGFG 192 (193)
Q Consensus 114 ~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~-v~~~~~~~~~~~~~~~~G~~~~~~~~ 192 (193)
+++++.++....++|.++....+++++++++|+|+ |.+|++++++++++|++ |+.+++++++.+.++++|++++++++
T Consensus 157 ~~~aa~~~~~~~ta~~~~~~~~~~~~g~~vLI~g~-g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~~g~~~vv~~~ 235 (363)
T cd08279 157 LDRAALLGCGVTTGVGAVVNTARVRPGDTVAVIGC-GGVGLNAIQGARIAGASRIIAVDPVPEKLELARRFGATHTVNAS 235 (363)
T ss_pred hHHeehhcchhHHHHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHhCCeEEeCCC
Confidence 99999999999999999878889999999999965 99999999999999996 99999999999999999999988764
No 75
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=99.97 E-value=1e-29 Score=208.32 Aligned_cols=186 Identities=28% Similarity=0.397 Sum_probs=165.1
Q ss_pred CEEEEEcCCCCCCceEEEeecCCCC-CCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCC
Q 029425 1 MKAIVITQPGSPEVLQLQEVEDPQI-KDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRW 79 (193)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~-~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~ 79 (193)
|||++++.+ +.+++++.+.|.| .+++|+||+.++++|++|+....|.++. .++|.++|+|++|+|+++|+++.++
T Consensus 1 m~a~~~~~~---~~~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~ 76 (386)
T cd08283 1 MKALVWHGK---GDVRVEEVPDPKIEDPTDAIVRVTATAICGSDLHLYHGYIPG-MKKGDILGHEFMGVVEEVGPEVRNL 76 (386)
T ss_pred CeeEEEecC---CCceEEeCCCCCCCCCCeEEEEEEEEecchhhhhhhcCCCCC-CCCCccccccceEEEEEeCCCCCCC
Confidence 999999864 4488999998988 4999999999999999999999887754 3468899999999999999999999
Q ss_pred CCCCEEEEEc-----------------------------------------------cCceeeeEEeecCC--ceEECCC
Q 029425 80 KVGDQVCALL-----------------------------------------------GGGGYAEKVAVPAG--QVLPVPS 110 (193)
Q Consensus 80 ~~G~~V~~~~-----------------------------------------------~~g~~~~~~~~~~~--~~~~~p~ 110 (193)
++||+|+..+ .+|+|++|+.++.+ .++++|+
T Consensus 77 ~~Gd~V~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~lp~ 156 (386)
T cd08283 77 KVGDRVVVPFTIACGECFYCKRGLYSQCDNTNPSAEMAKLYGHAGAGIFGYSHLTGGYAGGQAEYVRVPFADVGPFKIPD 156 (386)
T ss_pred CCCCEEEEcCcCCCCCChhhcCCCcccCCCcccccccccccccccccccccccccCCCCCeeEEEEEcccccCeEEECCC
Confidence 9999998743 14889999999987 8999999
Q ss_pred CCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHhhcCCcEEe
Q 029425 111 GVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQPFNIRVFI 189 (193)
Q Consensus 111 ~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~~~G~~~~~ 189 (193)
++++++++.++..++++|+++ ....++++++++|+|+ |.+|++++++|+++|+ +++.+++++++.+.+++++...++
T Consensus 157 ~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlV~g~-G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi 234 (386)
T cd08283 157 DLSDEKALFLSDILPTGYHAA-ELAEVKPGDTVAVWGC-GPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETI 234 (386)
T ss_pred CCCHHHHhhhccchhhhHHHH-hhccCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEE
Confidence 999999999999999999999 7788999999999975 9999999999999998 599999999999999998444677
Q ss_pred cCC
Q 029425 190 GFG 192 (193)
Q Consensus 190 ~~~ 192 (193)
+++
T Consensus 235 ~~~ 237 (386)
T cd08283 235 NFE 237 (386)
T ss_pred cCC
Confidence 654
No 76
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=99.97 E-value=7.4e-30 Score=207.68 Aligned_cols=186 Identities=26% Similarity=0.325 Sum_probs=165.7
Q ss_pred EEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCCC
Q 029425 2 KAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKV 81 (193)
Q Consensus 2 ~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~~ 81 (193)
||+++.+.+.+ +++++.+.|.+.+++++||+.++++|+.|++.+.+.+.. ..|.++|||++|+|+++|+++..+++
T Consensus 2 ~a~~~~~~~~~--~~~~~~~~p~~~~~~vlv~v~~~~i~~~d~~~~~g~~~~--~~~~i~g~e~~G~V~~vG~~v~~~~~ 77 (365)
T cd05279 2 KAAVLWEKGKP--LSIEEIEVAPPKAGEVRIKVVATGVCHTDLHVIDGKLPT--PLPVILGHEGAGIVESIGPGVTTLKP 77 (365)
T ss_pred ceeEEecCCCC--cEEEEeecCCCCCCeEEEEEEEeeecchhHHHhcCCCCC--CCCcccccceeEEEEEeCCCcccCCC
Confidence 67888876654 888999999999999999999999999999988886542 35789999999999999999999999
Q ss_pred CCEEEEEc------------------------------------------------cCceeeeEEeecCCceEECCCCCC
Q 029425 82 GDQVCALL------------------------------------------------GGGGYAEKVAVPAGQVLPVPSGVS 113 (193)
Q Consensus 82 G~~V~~~~------------------------------------------------~~g~~~~~~~~~~~~~~~~p~~~~ 113 (193)
||+|++.. ..|+|++|+.++++.++++|++++
T Consensus 78 Gd~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~lP~~~~ 157 (365)
T cd05279 78 GDKVIPLFGPQCGKCKQCLNPRPNLCSKSRGTNGRGLMSDGTSRFTCKGKPIHHFLGTSTFAEYTVVSEISLAKIDPDAP 157 (365)
T ss_pred CCEEEEcCCCCCCCChhhcCCCcccCCCcccccccccccCCcceeeccCCccccccccccccceEEecCCceEECCCCCC
Confidence 99998752 136899999999999999999999
Q ss_pred HHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCE-EEEEeCCcchHHHHhhcCCcEEecCC
Q 029425 114 LKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVR-VFVTAGLATRFILCQPFNIRVFIGFG 192 (193)
Q Consensus 114 ~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~-v~~~~~~~~~~~~~~~~G~~~~~~~~ 192 (193)
+++++.+..++.++|+++....+++++++++|+|+ |.+|++++++++++|++ ++++.+++++.+.++++|++++++++
T Consensus 158 ~~~a~~~~~~~~ta~~al~~~~~~~~g~~vlI~g~-g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~ 236 (365)
T cd05279 158 LEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGL-GGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQLGATECINPR 236 (365)
T ss_pred HHHhhHhccchhHHHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCCeecccc
Confidence 99999898899999999878889999999999975 99999999999999996 67777799999999999999998865
No 77
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=99.97 E-value=8.3e-30 Score=203.33 Aligned_cols=188 Identities=28% Similarity=0.407 Sum_probs=169.3
Q ss_pred EEcCCCCCC--ceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCCCC
Q 029425 5 VITQPGSPE--VLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKVG 82 (193)
Q Consensus 5 ~~~~~~~~~--~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~~G 82 (193)
++++++.+. .+++++.+.|.+.+++++||+.++++|+.|...+.+.+......|.++|+|++|+|+.+|+++..+++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~G 81 (323)
T cd05282 2 VYTQFGEPLPLVLELVSLPIPPPGPGEVLVRMLAAPINPSDLITISGAYGSRPPLPAVPGNEGVGVVVEVGSGVSGLLVG 81 (323)
T ss_pred eeCcCCCCccceEEeEeCCCCCCCCCeEEEEEEeccCCHHHHHHhcCcCCCCCCCCCcCCcceEEEEEEeCCCCCCCCCC
Confidence 345556655 688888888889999999999999999999988877665434467899999999999999999999999
Q ss_pred CEEEEEccCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHH
Q 029425 83 DQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKC 162 (193)
Q Consensus 83 ~~V~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~ 162 (193)
|+|+++..+|+|++|+.++...++++|+++++.+++.++..++++|+++.....+.++++++|+|++|.+|++++++|++
T Consensus 82 d~V~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~~a~~~~~~~ta~~~~~~~~~~~~~~~vlI~g~~~~vg~~~~~~a~~ 161 (323)
T cd05282 82 QRVLPLGGEGTWQEYVVAPADDLIPVPDSISDEQAAMLYINPLTAWLMLTEYLKLPPGDWVIQNAANSAVGRMLIQLAKL 161 (323)
T ss_pred CEEEEeCCCCcceeEEecCHHHeEECCCCCCHHHHHHHhccHHHHHHHHHHhccCCCCCEEEEcccccHHHHHHHHHHHH
Confidence 99999864689999999999999999999999999989999999999998888889999999999999999999999999
Q ss_pred CCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425 163 QGVRVFVTAGLATRFILCQPFNIRVFIGFG 192 (193)
Q Consensus 163 ~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~ 192 (193)
+|++++++++++++.+.++++|++.+++++
T Consensus 162 ~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~ 191 (323)
T cd05282 162 LGFKTINVVRRDEQVEELKALGADEVIDSS 191 (323)
T ss_pred CCCeEEEEecChHHHHHHHhcCCCEEeccc
Confidence 999999999999999999999999999875
No 78
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=99.97 E-value=1.4e-29 Score=204.23 Aligned_cols=187 Identities=22% Similarity=0.358 Sum_probs=166.6
Q ss_pred CEEEEEcCCCCCCceEEEeecCCCC-CCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCC
Q 029425 1 MKAIVITQPGSPEVLQLQEVEDPQI-KDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRW 79 (193)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~-~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~ 79 (193)
|||+++++++. +++++.+.|+| .++||+||+.++++|+.|+..+.|.++. ..+|.++|||++|+|+++|+++..+
T Consensus 1 m~a~~~~~~~~---~~~~~~~~p~~~~~~ev~v~v~a~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~V~~~G~~v~~~ 76 (345)
T cd08286 1 MKALVYHGPGK---ISWEDRPKPTIQEPTDAIVKMLKTTICGTDLHILKGDVPT-VTPGRILGHEGVGVVEEVGSAVTNF 76 (345)
T ss_pred CceEEEecCCc---eeEEecCCCCCCCCCeEEEEEEEeeecchhhHHHcCCCCC-CCCCceecccceEEEEEeccCcccc
Confidence 89999987653 88899998886 8999999999999999999998887653 2347899999999999999999999
Q ss_pred CCCCEEEEEc----------------------------cCceeeeEEeecCC--ceEECCCCCCHHhHccCcchHHHHHH
Q 029425 80 KVGDQVCALL----------------------------GGGGYAEKVAVPAG--QVLPVPSGVSLKDAAAFPEVACTVWS 129 (193)
Q Consensus 80 ~~G~~V~~~~----------------------------~~g~~~~~~~~~~~--~~~~~p~~~~~~~aa~~~~~~~~a~~ 129 (193)
++||+|+..+ .+|+|++|+.++.+ .++++|++++..+++.++..++++|+
T Consensus 77 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~ 156 (345)
T cd08286 77 KVGDRVLISCISSCGTCGYCRKGLYSHCESGGWILGNLIDGTQAEYVRIPHADNSLYKLPEGVDEEAAVMLSDILPTGYE 156 (345)
T ss_pred CCCCEEEECCcCCCCCChHHHCcCcccCCCcccccccccCCeeeeEEEcccccCceEECCCCCCHHHhhhccchhHHHHH
Confidence 9999998753 13889999999987 89999999999999999999999999
Q ss_pred HHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCC-CEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425 130 TVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQG-VRVFVTAGLATRFILCQPFNIRVFIGFG 192 (193)
Q Consensus 130 ~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g-~~v~~~~~~~~~~~~~~~~G~~~~~~~~ 192 (193)
++....+++++++++|+|+ |.+|.+++|+++.+| .+++++.+++++...++++|++.+++++
T Consensus 157 ~~~~~~~~~~g~~vlI~g~-g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~ 219 (345)
T cd08286 157 CGVLNGKVKPGDTVAIVGA-GPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKLGATHTVNSA 219 (345)
T ss_pred HHHhhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCceeccc
Confidence 8777788999999999886 999999999999999 6899988888899999999999999875
No 79
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=99.97 E-value=1.4e-29 Score=203.19 Aligned_cols=190 Identities=32% Similarity=0.456 Sum_probs=172.0
Q ss_pred CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425 1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK 80 (193)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~ 80 (193)
||++++..++.+. +.+.+.+.|.+.+++|+|++.++++|+.|.....+.++.....|.++|+|++|+|+.+|+++..++
T Consensus 1 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~~~~~g~~~~G~v~~~G~~v~~~~ 79 (338)
T cd08254 1 MKAWRFHKGSKGL-LVLEEVPVPEPGPGEVLVKVKAAGVCHSDLHILDGGVPTLTKLPLTLGHEIAGTVVEVGAGVTNFK 79 (338)
T ss_pred CeeEEEecCCCCc-eEEeccCCCCCCCCeEEEEEEEEeeccHhHHHHcCCCcccCCCCEeccccccEEEEEECCCCccCC
Confidence 8999999988876 788888889999999999999999999999988887764455678999999999999999999999
Q ss_pred CCCEEEE------------------Ec---------cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHH
Q 029425 81 VGDQVCA------------------LL---------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFM 133 (193)
Q Consensus 81 ~G~~V~~------------------~~---------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~ 133 (193)
+||+|+. ++ .+|+|++|+.++.+.++++|+++++.+++.++.++.+||+++..
T Consensus 80 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~a~~~~~~~~ta~~~l~~ 159 (338)
T cd08254 80 VGDRVAVPAVIPCGACALCRRGRGNLCLNQGMPGLGIDGGFAEYIVVPARALVPVPDGVPFAQAAVATDAVLTPYHAVVR 159 (338)
T ss_pred CCCEEEECCCCCCCCChhhhCcCcccCCCCCccccccCCcceeeEEechHHeEECCCCCCHHHhhhhcchHHHHHHHHHh
Confidence 9999986 21 25889999999999999999999999999999999999999988
Q ss_pred hcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425 134 TSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFG 192 (193)
Q Consensus 134 ~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~ 192 (193)
..+++++++++|.| +|.+|++++++|+.+|++|++++.++++.+.++++|++.+++++
T Consensus 160 ~~~~~~~~~vli~g-~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~g~~~~~~~~ 217 (338)
T cd08254 160 AGEVKPGETVLVIG-LGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKELGADEVLNSL 217 (338)
T ss_pred ccCCCCCCEEEEEC-CcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCCEEEcCC
Confidence 88899999999986 49999999999999999999999999999999999998888764
No 80
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=99.97 E-value=2.3e-29 Score=202.72 Aligned_cols=185 Identities=32% Similarity=0.451 Sum_probs=164.3
Q ss_pred CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425 1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK 80 (193)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~ 80 (193)
||++++++++. +.+++.+.|++.+++|+||+.++++|+.|+..+.+.+. +...|.++|+|++|+|+++|+++..++
T Consensus 1 ~~~~~~~~~~~---~~~~~~~~~~l~~~~v~i~v~~~~l~~~d~~~~~g~~~-~~~~~~~~g~~~~G~V~~~G~~v~~~~ 76 (343)
T cd08235 1 MKAAVLHGPND---VRLEEVPVPEPGPGEVLVKVRACGICGTDVKKIRGGHT-DLKPPRILGHEIAGEIVEVGDGVTGFK 76 (343)
T ss_pred CeEEEEecCCc---eEEEEccCCCCCCCeEEEEEEEeeeccccHHHHcCCCc-cCCCCcccccceEEEEEeeCCCCCCCC
Confidence 89999998763 88889999999999999999999999999998887664 233477899999999999999999999
Q ss_pred CCCEEEEEc---------------------------cCceeeeEEeecCCc-----eEECCCCCCHHhHccCcchHHHHH
Q 029425 81 VGDQVCALL---------------------------GGGGYAEKVAVPAGQ-----VLPVPSGVSLKDAAAFPEVACTVW 128 (193)
Q Consensus 81 ~G~~V~~~~---------------------------~~g~~~~~~~~~~~~-----~~~~p~~~~~~~aa~~~~~~~~a~ 128 (193)
+||+|+++. .+|+|++|+.++++. ++++|+++++.+++.+ +++.+||
T Consensus 77 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~~~~~~lP~~~~~~~aa~~-~~~~~a~ 155 (343)
T cd08235 77 VGDRVFVAPHVPCGECHYCLRGNENMCPNYKKFGNLYDGGFAEYVRVPAWAVKRGGVLKLPDNVSFEEAALV-EPLACCI 155 (343)
T ss_pred CCCEEEEccCCCCCCChHHHCcCcccCCCcceeccCCCCcceeeEEecccccccccEEECCCCCCHHHHHhh-hHHHHHH
Confidence 999999862 358999999999988 9999999999998765 7889999
Q ss_pred HHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCE-EEEEeCCcchHHHHhhcCCcEEecCC
Q 029425 129 STVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVR-VFVTAGLATRFILCQPFNIRVFIGFG 192 (193)
Q Consensus 129 ~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~-v~~~~~~~~~~~~~~~~G~~~~~~~~ 192 (193)
+++. ..+++++++++|+| +|.+|++++++|+.+|++ ++++++++++.+.++++|++++++++
T Consensus 156 ~~l~-~~~~~~g~~VlV~g-~g~vg~~~~~la~~~g~~~v~~~~~s~~~~~~~~~~g~~~~~~~~ 218 (343)
T cd08235 156 NAQR-KAGIKPGDTVLVIG-AGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAKKLGADYTIDAA 218 (343)
T ss_pred HHHH-hcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCcEEecCC
Confidence 9985 45899999999997 599999999999999998 88899999999999889999988875
No 81
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=99.97 E-value=1.7e-29 Score=203.48 Aligned_cols=185 Identities=30% Similarity=0.395 Sum_probs=161.7
Q ss_pred CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCC----------CCCCCCCCCCcceEEEEE
Q 029425 1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYP----------PPKGASPYPGLECSGTIL 70 (193)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~----------~~~~~p~~lg~e~~G~V~ 70 (193)
|||+++..+ .+++++.+.|++.+++|+||+.++++|+.|+....|... ....+|.++|+|++|+|+
T Consensus 1 m~a~~~~~~----~~~~~~~~~p~~~~~~v~V~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~ 76 (341)
T cd08262 1 MRAAVFRDG----PLVVRDVPDPEPGPGQVLVKVLACGICGSDLHATAHPEAMVDDAGGPSLMDLGADIVLGHEFCGEVV 76 (341)
T ss_pred CceEEEeCC----ceEEEecCCCCCCCCeEEEEEEEEEEcccchHHHcCCCcccccccccccccCCCCcccccceeEEEE
Confidence 899999865 488999999999999999999999999999988877321 112347889999999999
Q ss_pred EecCCCCC-CCCCCEEEEEc-----------------cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHH
Q 029425 71 SVGKNVSR-WKVGDQVCALL-----------------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVF 132 (193)
Q Consensus 71 ~vG~~~~~-~~~G~~V~~~~-----------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~ 132 (193)
++|+++.. |++||+|++++ .+|+|++|+.++.+.++++|+++++++++ ++.+++++|+++
T Consensus 77 ~vG~~v~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lP~~~s~~~a~-~~~~~~~a~~~~- 154 (341)
T cd08262 77 DYGPGTERKLKVGTRVTSLPLLLCGQGASCGIGLSPEAPGGYAEYMLLSEALLLRVPDGLSMEDAA-LTEPLAVGLHAV- 154 (341)
T ss_pred EeCCCCcCCCCCCCEEEecCCcCCCCChhhhCCCCcCCCCceeeeEEechHHeEECCCCCCHHHhh-hhhhHHHHHHHH-
Confidence 99999987 99999999872 35899999999999999999999988876 667888999986
Q ss_pred HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCE-EEEEeCCcchHHHHhhcCCcEEecCC
Q 029425 133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVR-VFVTAGLATRFILCQPFNIRVFIGFG 192 (193)
Q Consensus 133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~-v~~~~~~~~~~~~~~~~G~~~~~~~~ 192 (193)
...+++++++++|+|+ |.+|.+++|+++.+|++ ++++.+++++.++++++|++++++++
T Consensus 155 ~~~~~~~g~~VlI~g~-g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~i~~~ 214 (341)
T cd08262 155 RRARLTPGEVALVIGC-GPIGLAVIAALKARGVGPIVASDFSPERRALALAMGADIVVDPA 214 (341)
T ss_pred HhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCcEEEcCC
Confidence 7889999999999985 99999999999999996 66666788899999999999999865
No 82
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=99.97 E-value=1.9e-29 Score=203.63 Aligned_cols=191 Identities=35% Similarity=0.537 Sum_probs=166.6
Q ss_pred CEEEEEcCCCCCC-ceEEEeecCCCC-CCCeEEEEEeEecCChhhhhhhcCCCC--------C------CCCCCCCCCcc
Q 029425 1 MKAIVITQPGSPE-VLQLQEVEDPQI-KDDEVLIKVEATALNRADTLQRKGSYP--------P------PKGASPYPGLE 64 (193)
Q Consensus 1 m~a~~~~~~~~~~-~~~~~~~~~~~~-~~~evlV~v~~~~v~~~d~~~~~~~~~--------~------~~~~p~~lg~e 64 (193)
|||+++++++.+. .+++++.+.|.| .++||+||+.++++|++|+....+... . ....|.++|+|
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~G~e 80 (350)
T cd08248 1 MKAWQIHSYGGIDSLLLLENARIPVIRKPNQVLIKVHAASVNPIDVLMRSGYGRTLLNKKRKPQSCKYSGIEFPLTLGRD 80 (350)
T ss_pred CceEEecccCCCcceeeecccCCCCCCCCCeEEEEEEEEecCchhHHHHcCCccchhhhhhccccccccCCCCCeeecce
Confidence 8999999887753 477888888988 499999999999999999988877421 0 22457899999
Q ss_pred eEEEEEEecCCCCCCCCCCEEEEEc---cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCC--
Q 029425 65 CSGTILSVGKNVSRWKVGDQVCALL---GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSP-- 139 (193)
Q Consensus 65 ~~G~V~~vG~~~~~~~~G~~V~~~~---~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~-- 139 (193)
++|+|..+|+++.++++||+|+++. ..|+|++|+.++++.++++|+++++++++.++..+.++|+++.....+.+
T Consensus 81 ~~G~v~~vG~~v~~~~~Gd~V~~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~ 160 (350)
T cd08248 81 CSGVVVDIGSGVKSFEIGDEVWGAVPPWSQGTHAEYVVVPENEVSKKPKNLSHEEAASLPYAGLTAWSALVNVGGLNPKN 160 (350)
T ss_pred eEEEEEecCCCcccCCCCCEEEEecCCCCCccceeEEEecHHHeecCCCCCCHHHHhhchhHHHHHHHHHHHhccCCCcc
Confidence 9999999999999999999999875 36899999999999999999999999999999999999999877777654
Q ss_pred --CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425 140 --GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFG 192 (193)
Q Consensus 140 --~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~ 192 (193)
+++++|+|++|.+|++++++++++|++|+.++++ ++.+.++++|++.+++++
T Consensus 161 ~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~-~~~~~~~~~g~~~~~~~~ 214 (350)
T cd08248 161 AAGKRVLILGGSGGVGTFAIQLLKAWGAHVTTTCST-DAIPLVKSLGADDVIDYN 214 (350)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCc-chHHHHHHhCCceEEECC
Confidence 9999999999999999999999999999988854 677888889998888764
No 83
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=99.97 E-value=1.5e-29 Score=203.17 Aligned_cols=186 Identities=32% Similarity=0.446 Sum_probs=166.3
Q ss_pred CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425 1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK 80 (193)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~ 80 (193)
|||+++.+++++ +++++.+.|.+.++|++||+.++++|+.|+....+.++. ..+|.++|+|++|+|+++|+++..++
T Consensus 1 m~a~~~~~~~~~--~~~~~~~~~~~~~~~v~V~v~~~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~v~~~g~~~~~~~ 77 (334)
T PRK13771 1 MKAVILPGFKQG--YRIEEVPDPKPGKDEVVIKVNYAGLCYRDLLQLQGFYPR-MKYPVILGHEVVGTVEEVGENVKGFK 77 (334)
T ss_pred CeeEEEcCCCCC--cEEEeCCCCCCCCCeEEEEEEEEeechhhHHHhcCCCCC-CCCCeeccccceEEEEEeCCCCccCC
Confidence 899999988764 888999999999999999999999999999888776543 23477899999999999999998899
Q ss_pred CCCEEEEEc---------------------------cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHH
Q 029425 81 VGDQVCALL---------------------------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFM 133 (193)
Q Consensus 81 ~G~~V~~~~---------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~ 133 (193)
+||+|++.. .+|+|++|+.++.+.++++|+++++.+++.++..+.++|+++..
T Consensus 78 ~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~~a~l~~~~~~a~~~~~~ 157 (334)
T PRK13771 78 PGDRVASLLYAPDGTCEYCRSGEEAYCKNRLGYGEELDGFFAEYAKVKVTSLVKVPPNVSDEGAVIVPCVTGMVYRGLRR 157 (334)
T ss_pred CCCEEEECCCCCCcCChhhcCCCcccCccccccccccCceeeeeeecchhceEECCCCCCHHHhhcccchHHHHHHHHHh
Confidence 999999863 15899999999999999999999999999999999999999866
Q ss_pred hcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecC
Q 029425 134 TSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGF 191 (193)
Q Consensus 134 ~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~ 191 (193)
. .++++++++|+|++|.+|++++++++.+|++++.+++++++.+.++++ ++.++++
T Consensus 158 ~-~~~~~~~vlI~g~~g~~g~~~~~la~~~g~~vi~~~~~~~~~~~~~~~-~~~~~~~ 213 (334)
T PRK13771 158 A-GVKKGETVLVTGAGGGVGIHAIQVAKALGAKVIAVTSSESKAKIVSKY-ADYVIVG 213 (334)
T ss_pred c-CCCCCCEEEEECCCccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHH-HHHhcCc
Confidence 5 889999999999999999999999999999999999999998888777 6666654
No 84
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=99.97 E-value=1.5e-29 Score=203.02 Aligned_cols=190 Identities=39% Similarity=0.551 Sum_probs=163.5
Q ss_pred EEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCC---CCCCCCCcceEEE---EEEec-CCC
Q 029425 4 IVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPK---GASPYPGLECSGT---ILSVG-KNV 76 (193)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~---~~p~~lg~e~~G~---V~~vG-~~~ 76 (193)
.+...++.+.....++.+.|.|++++++|++.++++|+.|+....+.+.... .+|.+++.++.|. +...| ..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~iP~~~~~~~~i~~~a~a~NpiD~~~~~g~~~~~~~~~~~p~ii~~~g~~~~~~~~~~g~~~~ 88 (347)
T KOG1198|consen 9 SLVSPPGGGEVLFSEEVPIPEPEDGEVLIKVVAVALNPIDLKIRNGYYSPIPLGREFPGIIGRDGSGVVGAVESVGDDVV 88 (347)
T ss_pred EEeccCCCcceEEeecccCCCCCCCceEEEEEEeccChHHHHHHccCcCCCCCccCCCCccccccCCceeEEeccccccc
Confidence 3334445556666778889999999999999999999999999999887766 6775555555544 45555 334
Q ss_pred CCCCCCCEEEEEccCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhc------CCCCCCeEEEEcCCc
Q 029425 77 SRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTS------HLSPGESFLVHGGSS 150 (193)
Q Consensus 77 ~~~~~G~~V~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~------~~~~~~~vli~ga~g 150 (193)
..+..|+.+.....+|+|++|+.++...++++|++++++++|+++.++.+||.++.... +.++|+++||+|++|
T Consensus 89 ~~~~~g~~~~~~~~~g~~aey~v~p~~~~~~~P~~l~~~~aa~~p~~~~tA~~al~~~~~~~~~~~~~~g~~vLv~ggsg 168 (347)
T KOG1198|consen 89 GGWVHGDAVVAFLSSGGLAEYVVVPEKLLVKIPESLSFEEAAALPLAALTALSALFQLAPGKRSKKLSKGKSVLVLGGSG 168 (347)
T ss_pred cceEeeeEEeeccCCCceeeEEEcchhhccCCCCccChhhhhcCchHHHHHHHHHHhccccccccccCCCCeEEEEeCCc
Confidence 56778888777777899999999999999999999999999999999999999999989 899999999999999
Q ss_pred hHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCCC
Q 029425 151 GIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFGY 193 (193)
Q Consensus 151 ~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~~ 193 (193)
++|++++|+|++.++..+++++++++.++++++|+|+++||++
T Consensus 169 gVG~~aiQlAk~~~~~~v~t~~s~e~~~l~k~lGAd~vvdy~~ 211 (347)
T KOG1198|consen 169 GVGTAAIQLAKHAGAIKVVTACSKEKLELVKKLGADEVVDYKD 211 (347)
T ss_pred HHHHHHHHHHHhcCCcEEEEEcccchHHHHHHcCCcEeecCCC
Confidence 9999999999999987888888999999999999999999986
No 85
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=99.97 E-value=3.3e-29 Score=201.92 Aligned_cols=184 Identities=30% Similarity=0.416 Sum_probs=164.6
Q ss_pred CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425 1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK 80 (193)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~ 80 (193)
|||+++++++. +.+++.+.|+++++|++||+.++++|+.|+..+.+.+. ...|.++|+|++|+|+.+|+++..|+
T Consensus 1 ~~a~~~~~~~~---l~~~~~~~~~l~~~~v~v~v~~~~~n~~d~~~~~~~~~--~~~~~~~g~~~~G~V~~~g~~v~~~~ 75 (343)
T cd08236 1 MKALVLTGPGD---LRYEDIPKPEPGPGEVLVKVKACGICGSDIPRYLGTGA--YHPPLVLGHEFSGTVEEVGSGVDDLA 75 (343)
T ss_pred CeeEEEecCCc---eeEEecCCCCCCCCeEEEEEEEEEECccchHhhcCCCC--CCCCcccCcceEEEEEEECCCCCcCC
Confidence 89999998753 88889999999999999999999999999988877652 23468899999999999999999999
Q ss_pred CCCEEEEEc---------------------------cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHH
Q 029425 81 VGDQVCALL---------------------------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFM 133 (193)
Q Consensus 81 ~G~~V~~~~---------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~ 133 (193)
+||+|.+++ ..|+|++|+.++++.++++|+++++++++.+ ..++++|+++.
T Consensus 76 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lP~~~~~~~aa~~-~~~~ta~~~l~- 153 (343)
T cd08236 76 VGDRVAVNPLLPCGKCEYCKKGEYSLCSNYDYIGSRRDGAFAEYVSVPARNLIKIPDHVDYEEAAMI-EPAAVALHAVR- 153 (343)
T ss_pred CCCEEEEcCCCCCCCChhHHCcChhhCCCcceEecccCCcccceEEechHHeEECcCCCCHHHHHhc-chHHHHHHHHH-
Confidence 999999862 3589999999999999999999999998877 67889999985
Q ss_pred hcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCE-EEEEeCCcchHHHHhhcCCcEEecCC
Q 029425 134 TSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVR-VFVTAGLATRFILCQPFNIRVFIGFG 192 (193)
Q Consensus 134 ~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~-v~~~~~~~~~~~~~~~~G~~~~~~~~ 192 (193)
..+++++++++|+|+ |.+|.+++|+|+.+|++ ++++++++++.++++++|++.+++++
T Consensus 154 ~~~~~~~~~vlI~g~-g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~g~~~~~~~~ 212 (343)
T cd08236 154 LAGITLGDTVVVIGA-GTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARELGADDTINPK 212 (343)
T ss_pred hcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEecCc
Confidence 778999999999975 99999999999999997 99999999999999999999888875
No 86
>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.97 E-value=5.4e-29 Score=199.40 Aligned_cols=185 Identities=30% Similarity=0.504 Sum_probs=169.4
Q ss_pred EEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCCC
Q 029425 2 KAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKV 81 (193)
Q Consensus 2 ~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~~ 81 (193)
||+++...+.+..+++++.+.|.|.+++++||+.++++|+.|...+.+..+....+|.++|+|++|+|+.+|+++..|++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~vG~~v~~~~~ 81 (331)
T cd08273 2 REVVVTRRGGPEVLKVVEADLPEPAAGEVVVKVEASGVSFADVQMRRGLYPDQPPLPFTPGYDLVGRVDALGSGVTGFEV 81 (331)
T ss_pred eeEEEccCCCcccEEEeccCCCCCCCCeEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccccceEEEEEEeCCCCccCCC
Confidence 79999998888889999999999999999999999999999998888776443346789999999999999999999999
Q ss_pred CCEEEEEccCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHH
Q 029425 82 GDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGK 161 (193)
Q Consensus 82 G~~V~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~ 161 (193)
||+|.++...|++++|+.++.+.++++|+++++++++.++.++.++|+++.....++++++++|+|++|.+|++++++++
T Consensus 82 Gd~V~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~ 161 (331)
T cd08273 82 GDRVAALTRVGGNAEYINLDAKYLVPVPEGVDAAEAVCLVLNYVTAYQMLHRAAKVLTGQRVLIHGASGGVGQALLELAL 161 (331)
T ss_pred CCEEEEeCCCcceeeEEEechHHeEECCCCCCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHHHHHHHH
Confidence 99999986568899999999999999999999999999999999999999777889999999999999999999999999
Q ss_pred HCCCEEEEEeCCcchHHHHhhcCCcE
Q 029425 162 CQGVRVFVTAGLATRFILCQPFNIRV 187 (193)
Q Consensus 162 ~~g~~v~~~~~~~~~~~~~~~~G~~~ 187 (193)
.+|++|+.++. +++.+.++++|+..
T Consensus 162 ~~g~~v~~~~~-~~~~~~~~~~g~~~ 186 (331)
T cd08273 162 LAGAEVYGTAS-ERNHAALRELGATP 186 (331)
T ss_pred HcCCEEEEEeC-HHHHHHHHHcCCeE
Confidence 99999999997 88888888899643
No 87
>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.97 E-value=5.2e-29 Score=198.33 Aligned_cols=191 Identities=32% Similarity=0.553 Sum_probs=172.0
Q ss_pred CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425 1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK 80 (193)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~ 80 (193)
|||++++.++.+..+++++.+.|.+.+++|+|++.++++|++|.....+........|.++|+|++|+|..+|+++..|+
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~ 80 (326)
T cd08272 1 MKALVLESFGGPEVFELREVPRPQPGPGQVLVRVHASGVNPLDTKIRRGGAAARPPLPAILGCDVAGVVEAVGEGVTRFR 80 (326)
T ss_pred CeEEEEccCCCchheEEeecCCCCCCCCeEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccccceeEEEEEeCCCCCCCC
Confidence 89999999888777888888888899999999999999999999888776543333578899999999999999999999
Q ss_pred CCCEEEEEc-----cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHH
Q 029425 81 VGDQVCALL-----GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTF 155 (193)
Q Consensus 81 ~G~~V~~~~-----~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~ 155 (193)
+||+|.++. ..|++++|+.++.+.++++|+++++.+++.++..+.++|+++.+..+++++++++|+|+++.+|++
T Consensus 81 ~Gd~V~~~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~vli~g~~~~~g~~ 160 (326)
T cd08272 81 VGDEVYGCAGGLGGLQGSLAEYAVVDARLLALKPANLSMREAAALPLVGITAWEGLVDRAAVQAGQTVLIHGGAGGVGHV 160 (326)
T ss_pred CCCEEEEccCCcCCCCCceeEEEEecHHHcccCCCCCCHHHHHHhHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCcHHHH
Confidence 999999885 258899999999999999999999999998999999999998888999999999999989999999
Q ss_pred HHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425 156 AIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFG 192 (193)
Q Consensus 156 ~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~ 192 (193)
++++++.+|++|+.++++ ++.++++++|++.++++.
T Consensus 161 ~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~~~~~~ 196 (326)
T cd08272 161 AVQLAKAAGARVYATASS-EKAAFARSLGADPIIYYR 196 (326)
T ss_pred HHHHHHHcCCEEEEEech-HHHHHHHHcCCCEEEecc
Confidence 999999999999999988 889999889988887653
No 88
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=99.97 E-value=2.1e-29 Score=203.67 Aligned_cols=185 Identities=32% Similarity=0.420 Sum_probs=150.7
Q ss_pred CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCC-CCCcceEEEEEEecCCCCCC
Q 029425 1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASP-YPGLECSGTILSVGKNVSRW 79 (193)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~-~lg~e~~G~V~~vG~~~~~~ 79 (193)
|+++++..+... .++++.+.|.+.+++|+|||.++++|++|++.+++..+... .|. ++|||++|+|+++| .+..+
T Consensus 1 m~a~~~~~~~~~--~~~~~~~~p~~~p~~vlVkv~~~gICGSDlh~~~g~~~~~~-~~~~i~GHE~~G~V~evG-~~~~~ 76 (350)
T COG1063 1 MKAAVVYVGGGD--VRLEEPPPPIPGPGDVLIRVTATGICGSDLHIYRGGEPFVP-PGDIILGHEFVGEVVEVG-VVRGF 76 (350)
T ss_pred CceeEEEecCCc--cccccCCCCCCCCCeEEEEEEEEeEchhhhhhccCCCCCCC-CCCcccCccceEEEEEec-cccCC
Confidence 788888876543 33566666668999999999999999999999999765432 244 99999999999999 77889
Q ss_pred CCCCEEEEEc--------------------------------cCceeeeEEeecCCceEE-CCCCCCHHhHccCcchHHH
Q 029425 80 KVGDQVCALL--------------------------------GGGGYAEKVAVPAGQVLP-VPSGVSLKDAAAFPEVACT 126 (193)
Q Consensus 80 ~~G~~V~~~~--------------------------------~~g~~~~~~~~~~~~~~~-~p~~~~~~~aa~~~~~~~~ 126 (193)
++||+|+..+ .+|+|+||+.+|.++.+. +|+++ +.+++++..++.+
T Consensus 77 ~~GdrVvv~~~~~Cg~C~~C~~G~~~~C~~~~~~g~~~~~~~~~G~~aEyv~vp~~~~~~~~pd~~-~~~~aal~epla~ 155 (350)
T COG1063 77 KVGDRVVVEPNIPCGHCRYCRAGEYNLCENPGFYGYAGLGGGIDGGFAEYVRVPADFNLAKLPDGI-DEEAAALTEPLAT 155 (350)
T ss_pred CCCCEEEECCCcCCCCChhHhCcCcccCCCccccccccccCCCCCceEEEEEeccccCeecCCCCC-ChhhhhhcChhhh
Confidence 9999997421 148999999999766555 58887 5666678899999
Q ss_pred HHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHhh-cCCcEEecC
Q 029425 127 VWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQP-FNIRVFIGF 191 (193)
Q Consensus 127 a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~~-~G~~~~~~~ 191 (193)
++++.......+++++++|+|+ |.+|++++++++.+|+ +|++++.+++|++++++ .|++.++|.
T Consensus 156 ~~~~~a~~~~~~~~~~V~V~Ga-GpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~ 221 (350)
T COG1063 156 AYHGHAERAAVRPGGTVVVVGA-GPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNP 221 (350)
T ss_pred hhhhhhhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecC
Confidence 9877545555666679999997 9999999999999998 78888999999999998 777777765
No 89
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=99.97 E-value=8e-29 Score=200.38 Aligned_cols=186 Identities=25% Similarity=0.333 Sum_probs=161.1
Q ss_pred CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCC--------CCCCCCCCCcceEEEEEEe
Q 029425 1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPP--------PKGASPYPGLECSGTILSV 72 (193)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~--------~~~~p~~lg~e~~G~V~~v 72 (193)
|||+++++++ .+++++.+.|++.+++|+||+.++++|+.|+..+.|.... ..+.|.++|+|++|+|+++
T Consensus 1 mka~~~~~~~---~~~~~~~~~p~~~~~~v~V~v~a~~i~~~d~~~~~g~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~v 77 (350)
T cd08256 1 MRAVVCHGPQ---DYRLEEVPVPRPGPGEILVKVEACGICAGDIKCYHGAPSFWGDENQPPYVKPPMIPGHEFVGRVVEL 77 (350)
T ss_pred CeeEEEecCC---ceEEEECCCCCCCCCeEEEEEEEEEEcccchhhhcCCCccccccccCccCCCCcccCcceeEEEEEe
Confidence 8999998665 3889999999999999999999999999999888775311 0135778999999999999
Q ss_pred cCCCC--CCCCCCEEEE---------------------------E--ccCceeeeEEeecCC-ceEECCCCCCHHhHccC
Q 029425 73 GKNVS--RWKVGDQVCA---------------------------L--LGGGGYAEKVAVPAG-QVLPVPSGVSLKDAAAF 120 (193)
Q Consensus 73 G~~~~--~~~~G~~V~~---------------------------~--~~~g~~~~~~~~~~~-~~~~~p~~~~~~~aa~~ 120 (193)
|+++. .|++||+|.. + ...|+|++|+.++++ .++++|+++++++++.+
T Consensus 78 G~~v~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~lP~~~~~~~aa~~ 157 (350)
T cd08256 78 GEGAEERGVKVGDRVISEQIVPCWNCRFCNRGQYWMCQKHDLYGFQNNVNGGMAEYMRFPKEAIVHKVPDDIPPEDAILI 157 (350)
T ss_pred CCCcccCCCCCCCEEEECCcCCCCCChHHhCcCcccCcCccceeeccCCCCcceeeEEcccccceEECCCCCCHHHHhhh
Confidence 99998 8999999986 2 135899999999988 57899999999998887
Q ss_pred cchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCE-EEEEeCCcchHHHHhhcCCcEEecCC
Q 029425 121 PEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVR-VFVTAGLATRFILCQPFNIRVFIGFG 192 (193)
Q Consensus 121 ~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~-v~~~~~~~~~~~~~~~~G~~~~~~~~ 192 (193)
.++.++|+++ ...+++++++++|.| +|.+|++++++|+++|++ ++++++++++.+.++++|++.+++++
T Consensus 158 -~~~~ta~~a~-~~~~~~~g~~vlI~g-~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~v~~~~ 227 (350)
T cd08256 158 -EPLACALHAV-DRANIKFDDVVVLAG-AGPLGLGMIGAARLKNPKKLIVLDLKDERLALARKFGADVVLNPP 227 (350)
T ss_pred -hHHHHHHHHH-HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEEcCCHHHHHHHHHcCCcEEecCC
Confidence 8999999998 778999999999955 599999999999999985 66777888899998999999988764
No 90
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=99.97 E-value=5.7e-29 Score=199.07 Aligned_cols=184 Identities=32% Similarity=0.494 Sum_probs=160.8
Q ss_pred CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425 1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK 80 (193)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~ 80 (193)
||++++..++ +..+++++.+.|+++++|++||+.++++|++|+....+... ..+|.++|||++|+|+++|+++..|+
T Consensus 1 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~ev~v~v~~~~i~~~d~~~~~~~~~--~~~~~~~g~e~~G~v~~vG~~v~~~~ 77 (325)
T cd08264 1 MKALVFEKSG-IENLKVEDVKDPKPGPGEVLIRVKMAGVNPVDYNVINAVKV--KPMPHIPGAEFAGVVEEVGDHVKGVK 77 (325)
T ss_pred CeeEEeccCC-CCceEEEeccCCCCCCCeEEEEEEEEEechHHHHHHhCCCC--CCCCeecccceeEEEEEECCCCCCCC
Confidence 8999998776 56688888888889999999999999999999987764221 12467899999999999999999999
Q ss_pred CCCEEEEEc---------------------------cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHH
Q 029425 81 VGDQVCALL---------------------------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFM 133 (193)
Q Consensus 81 ~G~~V~~~~---------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~ 133 (193)
+||+|+.+. ..|+|++|+.++++.++++|+++++++++.++..+.++|+++..
T Consensus 78 ~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~l~~ 157 (325)
T cd08264 78 KGDRVVVYNRVFDGTCDMCLSGNEMLCRNGGIIGVVSNGGYAEYIVVPEKNLFKIPDSISDELAASLPVAALTAYHALKT 157 (325)
T ss_pred CCCEEEECCCcCCCCChhhcCCCccccCccceeeccCCCceeeEEEcCHHHceeCCCCCCHHHhhhhhhhhHHHHHHHHh
Confidence 999998652 35889999999999999999999999999999999999999854
Q ss_pred hcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425 134 TSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFG 192 (193)
Q Consensus 134 ~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~ 192 (193)
.+++++++++|+|++|.+|++++++|+++|++|+++++ .+.++++|++++++++
T Consensus 158 -~~~~~g~~vlI~g~~g~vg~~~~~~a~~~G~~v~~~~~----~~~~~~~g~~~~~~~~ 211 (325)
T cd08264 158 -AGLGPGETVVVFGASGNTGIFAVQLAKMMGAEVIAVSR----KDWLKEFGADEVVDYD 211 (325)
T ss_pred -cCCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeH----HHHHHHhCCCeeecch
Confidence 88999999999999999999999999999999988863 3677789998888764
No 91
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=99.97 E-value=9.4e-29 Score=199.07 Aligned_cols=186 Identities=25% Similarity=0.373 Sum_probs=165.5
Q ss_pred EEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCCC
Q 029425 2 KAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKV 81 (193)
Q Consensus 2 ~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~~ 81 (193)
|+++++..+ +.+++.+.+.|++.++|++||+.++++|++|...+.+.+.. ..+|.++|||++|+|+++|+++.+|++
T Consensus 1 ~~~~~~~~~--~~~~~~~~~~p~~~~~evlirv~a~~i~~~d~~~~~g~~~~-~~~p~~~g~e~~G~V~~vG~~v~~~~~ 77 (337)
T cd05283 1 KGYAARDAS--GKLEPFTFERRPLGPDDVDIKITYCGVCHSDLHTLRNEWGP-TKYPLVPGHEIVGIVVAVGSKVTKFKV 77 (337)
T ss_pred CceEEecCC--CCceEEeccCCCCCCCeEEEEEEEecccchHHHHhcCCcCC-CCCCcccCcceeeEEEEECCCCcccCC
Confidence 467788765 45999999999999999999999999999999988887643 345889999999999999999999999
Q ss_pred CCEEEEE-----------------------------------ccCceeeeEEeecCCceEECCCCCCHHhHccCcchHHH
Q 029425 82 GDQVCAL-----------------------------------LGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACT 126 (193)
Q Consensus 82 G~~V~~~-----------------------------------~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~ 126 (193)
||+|... ..+|+|++|+.++.+.++++|+++++++++.+.+.+.+
T Consensus 78 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~l~~~~~t 157 (337)
T cd05283 78 GDRVGVGCQVDSCGTCEQCKSGEEQYCPKGVVTYNGKYPDGTITQGGYADHIVVDERFVFKIPEGLDSAAAAPLLCAGIT 157 (337)
T ss_pred CCEEEEecCCCCCCCCccccCCchhcCcchhhcccccccCCCcCCCcceeEEEechhheEECCCCCCHHHhhhhhhHHHH
Confidence 9999731 23588999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425 127 VWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFG 192 (193)
Q Consensus 127 a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~ 192 (193)
||+++.. ..++++++++|.| .|.+|++++++++.+|++++.+++++++.++++++|++.+++++
T Consensus 158 a~~~~~~-~~~~~g~~vlV~g-~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~vi~~~ 221 (337)
T cd05283 158 VYSPLKR-NGVGPGKRVGVVG-IGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALKLGADEFIATK 221 (337)
T ss_pred HHHHHHh-cCCCCCCEEEEEC-CcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEecCc
Confidence 9999854 4589999999987 59999999999999999999999999999999999999998764
No 92
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=99.97 E-value=1.7e-28 Score=196.61 Aligned_cols=192 Identities=38% Similarity=0.578 Sum_probs=171.0
Q ss_pred CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425 1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK 80 (193)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~ 80 (193)
|||+++...+.+..+++.+.+.|.+.+++++||+.++++|++|+..+.|........|..+|||++|+|+.+|+++..|+
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~ 80 (342)
T cd08266 1 MKAVVIRGHGGPEVLEYGDLPEPEPGPDEVLVRVKAAALNHLDLWVRRGMPGIKLPLPHILGSDGAGVVEAVGPGVTNVK 80 (342)
T ss_pred CeEEEEecCCCccceeEeecCCCCCCCCeEEEEEEeeecCHHHHHHhcCCCCCCCCCCeecccceEEEEEEeCCCCCCCC
Confidence 89999987766777888888888899999999999999999999888876543334578999999999999999998999
Q ss_pred CCCEEEEEc---------------------------cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHH
Q 029425 81 VGDQVCALL---------------------------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFM 133 (193)
Q Consensus 81 ~G~~V~~~~---------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~ 133 (193)
+||+|+... ..|++++|+.++.+.++++|+++++++++.++.++.++|+++..
T Consensus 81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~a~~~~~~~~~a~~~l~~ 160 (342)
T cd08266 81 PGQRVVIYPGISCGRCEYCLAGRENLCAQYGILGEHVDGGYAEYVAVPARNLLPIPDNLSFEEAAAAPLTFLTAWHMLVT 160 (342)
T ss_pred CCCEEEEccccccccchhhccccccccccccccccccCcceeEEEEechHHceeCCCCCCHHHHHhhhhHHHHHHHHHHH
Confidence 999998762 25789999999999999999999999999999999999999878
Q ss_pred hcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425 134 TSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFG 192 (193)
Q Consensus 134 ~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~ 192 (193)
..+++++++++|+|+++.+|.+++++++.+|++++++++++++.+.++.+|.+.+++..
T Consensus 161 ~~~~~~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (342)
T cd08266 161 RARLRPGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKLERAKELGADYVIDYR 219 (342)
T ss_pred hcCCCCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCeEEecC
Confidence 88999999999999989999999999999999999999999999998888887777653
No 93
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=99.97 E-value=1.3e-28 Score=200.97 Aligned_cols=184 Identities=28% Similarity=0.465 Sum_probs=160.8
Q ss_pred CEEEEEcCCCCCCceEEEeecCCCC-CCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCC
Q 029425 1 MKAIVITQPGSPEVLQLQEVEDPQI-KDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRW 79 (193)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~-~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~ 79 (193)
||++++..++ .+++++.+.|.+ .++|++||+.++++|++|+....|.++. ..|.++|||++|+|+++|+++..+
T Consensus 1 m~~~~~~~~~---~~~~~~~~~p~~~~~~evlv~v~a~~i~~~D~~~~~g~~~~--~~p~~~g~e~~G~V~~vG~~v~~~ 75 (375)
T cd08282 1 MKAVVYGGPG---NVAVEDVPDPKIEHPTDAIVRITTTAICGSDLHMYRGRTGA--EPGLVLGHEAMGEVEEVGSAVESL 75 (375)
T ss_pred CceEEEecCC---ceeEEeCCCCCCCCCCeEEEEEEEEeeCHHHHHHHcCCCCC--CCCceeccccEEEEEEeCCCCCcC
Confidence 8999998654 488999999986 7999999999999999999998887652 358899999999999999999999
Q ss_pred CCCCEEEEE-------c------------------------------cCceeeeEEeecCC--ceEECCCCCCHH---hH
Q 029425 80 KVGDQVCAL-------L------------------------------GGGGYAEKVAVPAG--QVLPVPSGVSLK---DA 117 (193)
Q Consensus 80 ~~G~~V~~~-------~------------------------------~~g~~~~~~~~~~~--~~~~~p~~~~~~---~a 117 (193)
++||+|+.. + .+|+|++|+.++.. .++++|++++++ ++
T Consensus 76 ~~Gd~V~~~~~~~~g~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~~~lP~~~~~~~~~~~ 155 (375)
T cd08282 76 KVGDRVVVPFNVACGRCRNCKRGLTGVCLTVNPGRAGGAYGYVDMGPYGGGQAEYLRVPYADFNLLKLPDRDGAKEKDDY 155 (375)
T ss_pred CCCCEEEEeCCCCCCCCHHHHCcCcccCCCCCcccccccccccccCCCCCeeeeEEEeecccCcEEECCCCCChhhhhhe
Confidence 999999862 1 13889999999976 899999999988 46
Q ss_pred ccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425 118 AAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQPFNIRVFIGFG 192 (193)
Q Consensus 118 a~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~~~G~~~~~~~~ 192 (193)
+.+..++.++|+++ ...+++++++++|.|+ |.+|++++|+++++|+ +++++.+++++.+.++++|+ ..+|++
T Consensus 156 a~~~~~~~ta~~a~-~~~~~~~g~~vlI~g~-g~vg~~~~~~a~~~G~~~vi~~~~~~~~~~~~~~~g~-~~v~~~ 228 (375)
T cd08282 156 LMLSDIFPTGWHGL-ELAGVQPGDTVAVFGA-GPVGLMAAYSAILRGASRVYVVDHVPERLDLAESIGA-IPIDFS 228 (375)
T ss_pred eeecchHHHHHHHH-HhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCC-eEeccC
Confidence 77888899999999 7889999999999875 9999999999999998 79998889999999999998 456654
No 94
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family. Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.
Probab=99.97 E-value=2.2e-28 Score=194.49 Aligned_cols=192 Identities=58% Similarity=0.944 Sum_probs=172.9
Q ss_pred CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425 1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK 80 (193)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~ 80 (193)
||++.+..++.+..+++++.+.+.+.+++++||+.++++|+.|.....+.+..+..+|.++|||++|+|..+|+++.+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vg~~~~~~~ 80 (325)
T TIGR02824 1 MKAIEITEPGGPEVLVLVEVPLPVPKAGEVLIRVAAAGVNRPDLLQRAGKYPPPPGASDILGLEVAGEVVAVGEGVSRWK 80 (325)
T ss_pred CceEEEccCCCcccceEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCCCCccceeEEEEEEeCCCCCCCC
Confidence 89999988777777888777777789999999999999999999888776654444578999999999999999999999
Q ss_pred CCCEEEEEccCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHH
Q 029425 81 VGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMG 160 (193)
Q Consensus 81 ~G~~V~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~ 160 (193)
+||+|.++..+|++++|+.++...++++|+++++.+++.++.++.++|+++.....++++++++|+|+++.+|.++++++
T Consensus 81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~~~~~~~~~~~~~vlv~g~~~~~g~~~~~~a 160 (325)
T TIGR02824 81 VGDRVCALVAGGGYAEYVAVPAGQVLPVPEGLSLVEAAALPETFFTVWSNLFQRGGLKAGETVLIHGGASGIGTTAIQLA 160 (325)
T ss_pred CCCEEEEccCCCcceeEEEecHHHcEeCCCCCCHHHHHhhhHHHHHHHHHHHHhcCCCCCCEEEEEcCcchHHHHHHHHH
Confidence 99999998666899999999999999999999999999999999999999878889999999999999999999999999
Q ss_pred HHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425 161 KCQGVRVFVTAGLATRFILCQPFNIRVFIGFG 192 (193)
Q Consensus 161 ~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~ 192 (193)
+.+|++++++.+++++.+.++++|++.+++..
T Consensus 161 ~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~ 192 (325)
T TIGR02824 161 KAFGARVFTTAGSDEKCAACEALGADIAINYR 192 (325)
T ss_pred HHcCCEEEEEeCCHHHHHHHHHcCCcEEEecC
Confidence 99999999999999999988889988777653
No 95
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=99.97 E-value=1.3e-28 Score=196.69 Aligned_cols=179 Identities=22% Similarity=0.303 Sum_probs=156.0
Q ss_pred CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425 1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK 80 (193)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~ 80 (193)
|||+++.+++ .+++++.+.|+++++|++||+.++++|+.|.....+.++ .|.++|+|++|+|+++|++ ++
T Consensus 1 ~~a~~~~~~~---~~~~~~~~~p~~~~~~vlV~v~a~~i~~~d~~~~~g~~~----~~~~~G~e~~G~Vv~~G~~---~~ 70 (319)
T cd08242 1 MKALVLDGGL---DLRVEDLPKPEPPPGEALVRVLLAGICNTDLEIYKGYYP----FPGVPGHEFVGIVEEGPEA---EL 70 (319)
T ss_pred CeeEEEeCCC---cEEEEECCCCCCCCCeEEEEEEEEEEccccHHHHcCCCC----CCCccCceEEEEEEEeCCC---CC
Confidence 8999998754 489999999999999999999999999999998888664 3789999999999999987 67
Q ss_pred CCCEEEEE----------------------------ccCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHH
Q 029425 81 VGDQVCAL----------------------------LGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVF 132 (193)
Q Consensus 81 ~G~~V~~~----------------------------~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~ 132 (193)
+||+|... ..+|+|++|+.++.+.++++|++++.++++.+ .+..++|..+
T Consensus 71 ~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lP~~~~~~~aa~~-~~~~~~~~~~- 148 (319)
T cd08242 71 VGKRVVGEINIACGRCEYCRRGLYTHCPNRTVLGIVDRDGAFAEYLTLPLENLHVVPDLVPDEQAVFA-EPLAAALEIL- 148 (319)
T ss_pred CCCeEEECCCcCCCCChhhhCcCcccCCCCcccCccCCCCceEEEEEechHHeEECcCCCCHHHhhhh-hHHHHHHHHH-
Confidence 99998631 12588999999999999999999998887753 4455666555
Q ss_pred HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425 133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFG 192 (193)
Q Consensus 133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~ 192 (193)
...+++++++++|+| +|.+|++++|+++.+|+++++++.++++.++++++|++.+++++
T Consensus 149 ~~~~~~~g~~vlV~g-~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~~~~~ 207 (319)
T cd08242 149 EQVPITPGDKVAVLG-DGKLGLLIAQVLALTGPDVVLVGRHSEKLALARRLGVETVLPDE 207 (319)
T ss_pred HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEeCcc
Confidence 778899999999997 59999999999999999999999999999999999999888764
No 96
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=99.97 E-value=1.4e-28 Score=197.35 Aligned_cols=184 Identities=33% Similarity=0.475 Sum_probs=164.0
Q ss_pred CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425 1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK 80 (193)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~ 80 (193)
|||+++.+++ .+++.+.+.|++.++|++||+.++++|+.|+....|.++.. +|.++|+|++|+|+.+|+++.+++
T Consensus 1 ~~a~~~~~~~---~~~~~~~~~~~l~~~~v~v~v~~~~l~~~d~~~~~g~~~~~--~p~~~g~~~~G~v~~vG~~v~~~~ 75 (334)
T cd08234 1 MKALVYEGPG---ELEVEEVPVPEPGPDEVLIKVAACGICGTDLHIYEGEFGAA--PPLVPGHEFAGVVVAVGSKVTGFK 75 (334)
T ss_pred CeeEEecCCC---ceEEEeccCCCCCCCeEEEEEEEEeEchhhhHHhcCCCCCC--CCcccccceEEEEEEeCCCCCCCC
Confidence 8999998766 38899999999999999999999999999999888876532 578999999999999999999999
Q ss_pred CCCEEEEE---------------------------ccCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHH
Q 029425 81 VGDQVCAL---------------------------LGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFM 133 (193)
Q Consensus 81 ~G~~V~~~---------------------------~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~ 133 (193)
+||+|+.. ..+|++++|+.++.+.++++|+++++.+++.+ .++.++++++ .
T Consensus 76 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lP~~~~~~~aa~~-~~~~~a~~~l-~ 153 (334)
T cd08234 76 VGDRVAVDPNIYCGECFYCRRGRPNLCENLTAVGVTRNGGFAEYVVVPAKQVYKIPDNLSFEEAALA-EPLSCAVHGL-D 153 (334)
T ss_pred CCCEEEEcCCcCCCCCccccCcChhhCCCcceeccCCCCcceeEEEecHHHcEECcCCCCHHHHhhh-hHHHHHHHHH-H
Confidence 99999761 13588999999999999999999999888765 7788999988 7
Q ss_pred hcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCE-EEEEeCCcchHHHHhhcCCcEEecCC
Q 029425 134 TSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVR-VFVTAGLATRFILCQPFNIRVFIGFG 192 (193)
Q Consensus 134 ~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~-v~~~~~~~~~~~~~~~~G~~~~~~~~ 192 (193)
..+++++++++|+|+ |.+|.+++++++++|++ ++++++++++.+.++++|++.+++++
T Consensus 154 ~~~~~~g~~vlI~g~-g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~ 212 (334)
T cd08234 154 LLGIKPGDSVLVFGA-GPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVDPS 212 (334)
T ss_pred hcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCeEEecCC
Confidence 789999999999975 99999999999999997 88899999999999889988888764
No 97
>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.97 E-value=2.7e-28 Score=194.19 Aligned_cols=192 Identities=34% Similarity=0.496 Sum_probs=172.7
Q ss_pred CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425 1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK 80 (193)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~ 80 (193)
||++++...+.+..+.+.+.+.|.+.+++++|++.++++|+.|.....+.+.....+|.++|||++|+|+.+|+++.+|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~ 80 (328)
T cd08268 1 MRAVRFHQFGGPEVLRIEELPVPAPGAGEVLIRVEAIGLNRADAMFRRGAYIEPPPLPARLGYEAAGVVEAVGAGVTGFA 80 (328)
T ss_pred CeEEEEeccCCcceeEEeecCCCCCCCCeEEEEEEEEecChHHhheeccccCCCCCCCCCCCcceEEEEEeeCCCCCcCC
Confidence 89999998777777888888888899999999999999999999887776554334578899999999999999999999
Q ss_pred CCCEEEEEc-----cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHH
Q 029425 81 VGDQVCALL-----GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTF 155 (193)
Q Consensus 81 ~G~~V~~~~-----~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~ 155 (193)
+||+|.++. .+|.+++|+.++.+.++++|+++++++++.++.++.++|+++.....+.++++++|+|+++.+|++
T Consensus 81 ~Gd~V~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~~~~g~~ 160 (328)
T cd08268 81 VGDRVSVIPAADLGQYGTYAEYALVPAAAVVKLPDGLSFVEAAALWMQYLTAYGALVELAGLRPGDSVLITAASSSVGLA 160 (328)
T ss_pred CCCEEEeccccccCCCccceEEEEechHhcEeCCCCCCHHHHHHhhhHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHH
Confidence 999999874 248899999999999999999999999999999999999999888889999999999999999999
Q ss_pred HHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425 156 AIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFG 192 (193)
Q Consensus 156 ~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~ 192 (193)
++++++..|++++.+++++++.+.++++|++.+++++
T Consensus 161 ~~~~~~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~ 197 (328)
T cd08268 161 AIQIANAAGATVIATTRTSEKRDALLALGAAHVIVTD 197 (328)
T ss_pred HHHHHHHcCCEEEEEcCCHHHHHHHHHcCCCEEEecC
Confidence 9999999999999999999999999889988887754
No 98
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=99.97 E-value=2.2e-28 Score=197.15 Aligned_cols=183 Identities=30% Similarity=0.453 Sum_probs=160.6
Q ss_pred CEEEEEcCCCCCCceEEEeecCCCCC-CCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCC
Q 029425 1 MKAIVITQPGSPEVLQLQEVEDPQIK-DDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRW 79 (193)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~-~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~ 79 (193)
|||+++..+. .+++++.+.|.|. ++||+||+.++++|+.|+....+.++ ...|.++|+|++|+|+++|+++..+
T Consensus 1 ~~a~~~~~~~---~~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~--~~~~~~~g~e~~G~V~~vG~~v~~~ 75 (344)
T cd08284 1 MKAVVFKGPG---DVRVEEVPIPQIQDPTDAIVKVTAAAICGSDLHIYRGHIP--STPGFVLGHEFVGEVVEVGPEVRTL 75 (344)
T ss_pred CeeEEEecCC---CceEEeccCCCCCCCCeEEEEEEEeeccccchhhhcCCCC--CCCCcccccceEEEEEeeCCCcccc
Confidence 8999998753 4889999999885 99999999999999999988887665 2347889999999999999999999
Q ss_pred CCCCEEEEEcc-------------------------------CceeeeEEeecCC--ceEECCCCCCHHhHccCcchHHH
Q 029425 80 KVGDQVCALLG-------------------------------GGGYAEKVAVPAG--QVLPVPSGVSLKDAAAFPEVACT 126 (193)
Q Consensus 80 ~~G~~V~~~~~-------------------------------~g~~~~~~~~~~~--~~~~~p~~~~~~~aa~~~~~~~~ 126 (193)
++||+|++++. +|++++|+.++++ .++++|+++++++++.++.++++
T Consensus 76 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~p~~l~~~~a~~l~~~~~t 155 (344)
T cd08284 76 KVGDRVVSPFTIACGECFYCRRGQSGRCAKGGLFGYAGSPNLDGAQAEYVRVPFADGTLLKLPDGLSDEAALLLGDILPT 155 (344)
T ss_pred CCCCEEEEcccCCCCCChHHhCcCcccCCCCccccccccCCCCCceeEEEEcccccCceEECCCCCCHHHhhhhcCchHH
Confidence 99999987531 4889999999865 99999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHhhcCCcEEecC
Q 029425 127 VWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQPFNIRVFIGF 191 (193)
Q Consensus 127 a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~~~G~~~~~~~ 191 (193)
||+++. ..++.++++++|+| +|.+|++++++++.+|+ +++++.+++++...++++|+. .+++
T Consensus 156 a~~~~~-~~~~~~~~~vlI~g-~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~~-~~~~ 218 (344)
T cd08284 156 GYFGAK-RAQVRPGDTVAVIG-CGPVGLCAVLSAQVLGAARVFAVDPVPERLERAAALGAE-PINF 218 (344)
T ss_pred HHhhhH-hcCCccCCEEEEEC-CcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHhCCe-EEec
Confidence 999995 47889999999997 59999999999999997 899988888888888889974 4544
No 99
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=99.97 E-value=2e-28 Score=197.39 Aligned_cols=186 Identities=27% Similarity=0.299 Sum_probs=157.4
Q ss_pred CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCC--CCCCCCCCCCcceEEEEEEecCCCCC
Q 029425 1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYP--PPKGASPYPGLECSGTILSVGKNVSR 78 (193)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~--~~~~~p~~lg~e~~G~V~~vG~~~~~ 78 (193)
||+++++++++ .+++.+.+.|.|.++|++||+.++++|++|...+.+... ....+|.++|+|++|+|+++|++++.
T Consensus 1 ~~~~~~~~~~~--~~~~~~~~~p~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~V~~vG~~v~~ 78 (341)
T PRK05396 1 MKALVKLKAEP--GLWLTDVPVPEPGPNDVLIKVKKTAICGTDVHIYNWDEWAQKTIPVPMVVGHEFVGEVVEVGSEVTG 78 (341)
T ss_pred CceEEEecCCC--ceEEEECCCCCCCCCeEEEEEEEEEEcccchHhhcCCCcccccCCCCcccceeeEEEEEEeCCCCCc
Confidence 89999988763 489999999999999999999999999999987655321 11235778999999999999999999
Q ss_pred CCCCCEEEEEc---------------------------cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHH
Q 029425 79 WKVGDQVCALL---------------------------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTV 131 (193)
Q Consensus 79 ~~~G~~V~~~~---------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l 131 (193)
+++||+|++.. .+|+|++|+.++.+.++++|+++++++++. ..++.++++++
T Consensus 79 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~l~~~~~~~-~~~~~~~~~~~ 157 (341)
T PRK05396 79 FKVGDRVSGEGHIVCGHCRNCRAGRRHLCRNTKGVGVNRPGAFAEYLVIPAFNVWKIPDDIPDDLAAI-FDPFGNAVHTA 157 (341)
T ss_pred CCCCCEEEECCCCCCCCChhhhCcChhhCCCcceeeecCCCcceeeEEechHHeEECcCCCCHHHhHh-hhHHHHHHHHH
Confidence 99999998751 358999999999999999999999988874 45666666655
Q ss_pred HHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425 132 FMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQPFNIRVFIGFG 192 (193)
Q Consensus 132 ~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~~~G~~~~~~~~ 192 (193)
.. ...+|++++|.|+ |.+|.+++|+++++|+ +++++.+++++.+.++++|++.+++++
T Consensus 158 ~~--~~~~g~~vlV~~~-g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~lg~~~~~~~~ 216 (341)
T PRK05396 158 LS--FDLVGEDVLITGA-GPIGIMAAAVAKHVGARHVVITDVNEYRLELARKMGATRAVNVA 216 (341)
T ss_pred Hc--CCCCCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCcEEecCc
Confidence 32 3468999999875 9999999999999999 688888888899999999999999875
No 100
>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast. This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi
Probab=99.97 E-value=3.2e-28 Score=196.93 Aligned_cols=191 Identities=32% Similarity=0.466 Sum_probs=159.0
Q ss_pred CEEEEEcCCCCCCceEEEeecCCC-CCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCC-C
Q 029425 1 MKAIVITQPGSPEVLQLQEVEDPQ-IKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVS-R 78 (193)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~-~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~-~ 78 (193)
.|++++.+.+.+..++..+.+.|. +.+++|+||+.++++|++|+..+.+........|.++|+|++|+|+++|+++. .
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~I~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~ 80 (352)
T cd08247 1 YKALTFKNNTSPLTITTIKLPLPNCYKDNEIVVKVHAAALNPVDLKLYNSYTFHFKVKEKGLGRDYSGVIVKVGSNVASE 80 (352)
T ss_pred CceEEEecCCCcceeeccCCCCCCCCCCCeEEEEEEEEecChHhHHHhcccccccccCCCccCceeEEEEEEeCcccccC
Confidence 478999998877555544444443 49999999999999999999877543222122367899999999999999998 8
Q ss_pred CCCCCEEEEEc-----cCceeeeEEeecCC----ceEECCCCCCHHhHccCcchHHHHHHHHHHhc-CCCCCCeEEEEcC
Q 029425 79 WKVGDQVCALL-----GGGGYAEKVAVPAG----QVLPVPSGVSLKDAAAFPEVACTVWSTVFMTS-HLSPGESFLVHGG 148 (193)
Q Consensus 79 ~~~G~~V~~~~-----~~g~~~~~~~~~~~----~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~-~~~~~~~vli~ga 148 (193)
|++||+|+++. ..|+|++|+.++.. .++++|+++++.+++.++..+.++|+++.... ++++|++++|+|+
T Consensus 81 ~~~Gd~V~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~lP~~l~~~~aa~~~~~~~ta~~~l~~~~~~~~~g~~vlI~ga 160 (352)
T cd08247 81 WKVGDEVCGIYPHPYGGQGTLSQYLLVDPKKDKKSITRKPENISLEEAAAWPLVLGTAYQILEDLGQKLGPDSKVLVLGG 160 (352)
T ss_pred CCCCCEEEEeecCCCCCCceeeEEEEEccccccceeEECCCCCCHHHHHHhHHHHHHHHHHHHHhhhccCCCCeEEEECC
Confidence 99999999875 25899999999987 78999999999999999999999999997766 7999999999999
Q ss_pred CchHHHHHHHHHHHCC-C-EEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425 149 SSGIGTFAIQMGKCQG-V-RVFVTAGLATRFILCQPFNIRVFIGFG 192 (193)
Q Consensus 149 ~g~~G~~~i~~~~~~g-~-~v~~~~~~~~~~~~~~~~G~~~~~~~~ 192 (193)
++.+|++++++|+.+| . .++.+. ++++.+.++++|++.+++++
T Consensus 161 ~~~vg~~~~~~a~~~~~~~~v~~~~-~~~~~~~~~~~g~~~~i~~~ 205 (352)
T cd08247 161 STSVGRFAIQLAKNHYNIGTVVGTC-SSRSAELNKKLGADHFIDYD 205 (352)
T ss_pred CchHHHHHHHHHHhcCCcceEEEEe-ChhHHHHHHHhCCCEEEecC
Confidence 9999999999999974 5 566655 56667788889999999864
No 101
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=99.97 E-value=3.1e-28 Score=193.79 Aligned_cols=187 Identities=37% Similarity=0.543 Sum_probs=161.1
Q ss_pred CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425 1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK 80 (193)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~ 80 (193)
||++++++++ +..+++++++.|++.+++|+||+.++++|+.|...+.+.+.. ...|.++|+|++|+|+.+|++++.|+
T Consensus 1 ~~~~~~~~~~-~~~~~~~~~~~p~~~~~~v~V~v~~~~l~~~d~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~~ 78 (306)
T cd08258 1 MKALVKTGPG-PGNVELREVPEPEPGPGEVLIKVAAAGICGSDLHIYKGDYDP-VETPVVLGHEFSGTIVEVGPDVEGWK 78 (306)
T ss_pred CeeEEEecCC-CCceEEeecCCCCCCCCeEEEEEEEEEechhhHHHHcCCCCc-CCCCeeeccceEEEEEEECCCcCcCC
Confidence 8999998743 456899999999999999999999999999999888776522 23467899999999999999999999
Q ss_pred CCCEEEEEc----------------------------cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHH
Q 029425 81 VGDQVCALL----------------------------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVF 132 (193)
Q Consensus 81 ~G~~V~~~~----------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~ 132 (193)
+||+|+++. .+|+|++|+.++...++++|+++++++++ ++.+..++|+++.
T Consensus 79 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa-~~~~~~~a~~~l~ 157 (306)
T cd08258 79 VGDRVVSETTFSTCGRCPYCRRGDYNLCPHRKGIGTQADGGFAEYVLVPEESLHELPENLSLEAAA-LTEPLAVAVHAVA 157 (306)
T ss_pred CCCEEEEccCcCCCCCCcchhCcCcccCCCCceeeecCCCceEEEEEcchHHeEECcCCCCHHHHH-hhchHHHHHHHHH
Confidence 999998864 14899999999999999999999999876 7788899999988
Q ss_pred HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC--CcchHHHHhhcCCcEEecCC
Q 029425 133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG--LATRFILCQPFNIRVFIGFG 192 (193)
Q Consensus 133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~--~~~~~~~~~~~G~~~~~~~~ 192 (193)
...+++++++++|.| +|.+|.+++++++++|++|+.+.. ++++.+.++++|++.+ +++
T Consensus 158 ~~~~~~~g~~vlI~g-~g~~g~~~~~la~~~G~~v~~~~~~~~~~~~~~~~~~g~~~~-~~~ 217 (306)
T cd08258 158 ERSGIRPGDTVVVFG-PGPIGLLAAQVAKLQGATVVVVGTEKDEVRLDVAKELGADAV-NGG 217 (306)
T ss_pred HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHhCCccc-CCC
Confidence 888999999999976 599999999999999999887633 4447777788898777 653
No 102
>cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.96 E-value=7.4e-28 Score=191.90 Aligned_cols=190 Identities=35% Similarity=0.589 Sum_probs=169.4
Q ss_pred CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425 1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK 80 (193)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~ 80 (193)
|||+++.+++....+++++.+.|++.+++++||+.++++|+.|+....+.... ...|.++|||++|+|+.+|+++..++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~-~~~~~~~g~e~~G~v~~~G~~~~~~~ 79 (325)
T cd08271 1 MKAWVLPKPGAALQLTLEEIEIPGPGAGEVLVKVHAAGLNPVDWKVIAWGPPA-WSYPHVPGVDGAGVVVAVGAKVTGWK 79 (325)
T ss_pred CeeEEEccCCCcceeEEeccCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCC-CCCCcccccceEEEEEEeCCCCCcCC
Confidence 89999998874335999999999999999999999999999999887766532 12367899999999999999999999
Q ss_pred CCCEEEEEc---cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHH
Q 029425 81 VGDQVCALL---GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAI 157 (193)
Q Consensus 81 ~G~~V~~~~---~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i 157 (193)
+||+|.++. .+++|++|+.++.+.++++|+++++.+++.+..++.++++++....+++++++++|+|+.+.+|++++
T Consensus 80 ~Gd~V~~~~~~~~~~~~~s~~~~~~~~~~~ip~~~~~~~~a~~~~~~~~a~~~~~~~~~~~~g~~vlI~g~~~~ig~~~~ 159 (325)
T cd08271 80 VGDRVAYHASLARGGSFAEYTVVDARAVLPLPDSLSFEEAAALPCAGLTAYQALFKKLRIEAGRTILITGGAGGVGSFAV 159 (325)
T ss_pred CCCEEEeccCCCCCccceeEEEeCHHHeEECCCCCCHHHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEECCccHHHHHHH
Confidence 999999885 36889999999999999999999999999999999999999988889999999999999899999999
Q ss_pred HHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425 158 QMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFG 192 (193)
Q Consensus 158 ~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~ 192 (193)
++++.+|++++.+. ++++.+.++++|++.+++..
T Consensus 160 ~~a~~~g~~v~~~~-~~~~~~~~~~~g~~~~~~~~ 193 (325)
T cd08271 160 QLAKRAGLRVITTC-SKRNFEYVKSLGADHVIDYN 193 (325)
T ss_pred HHHHHcCCEEEEEE-cHHHHHHHHHcCCcEEecCC
Confidence 99999999999887 77888888889998888754
No 103
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=99.96 E-value=8.3e-28 Score=190.48 Aligned_cols=189 Identities=32% Similarity=0.452 Sum_probs=169.7
Q ss_pred EEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCCC
Q 029425 2 KAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKV 81 (193)
Q Consensus 2 ~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~~ 81 (193)
||+....++.+..+.+.+.+.+.+.+++++|++.++++|+.|+....+.++. .+|.++|+|++|+|+.+|+++.++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~~~~~~--~~~~~~g~e~~G~v~~~g~~~~~~~~ 78 (320)
T cd05286 1 KAVRIHKTGGPEVLEYEDVPVPEPGPGEVLVRNTAIGVNFIDTYFRSGLYPL--PLPFVLGVEGAGVVEAVGPGVTGFKV 78 (320)
T ss_pred CeEEEecCCCccceEEeecCCCCCCCCEEEEEEEEeecCHHHHHHhcCCCCC--CCCccCCcceeEEEEEECCCCCCCCC
Confidence 5777777777767888887777789999999999999999999888776543 34678999999999999999999999
Q ss_pred CCEEEEEccCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHH
Q 029425 82 GDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGK 161 (193)
Q Consensus 82 G~~V~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~ 161 (193)
||+|.++...|++++|+.++.+.++++|++++..+++.++..++++|+++....+++++++++|+|++|.+|++++++++
T Consensus 79 G~~V~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~g~~g~~~~~~a~ 158 (320)
T cd05286 79 GDRVAYAGPPGAYAEYRVVPASRLVKLPDGISDETAAALLLQGLTAHYLLRETYPVKPGDTVLVHAAAGGVGLLLTQWAK 158 (320)
T ss_pred CCEEEEecCCCceeEEEEecHHHceeCCCCCCHHHHhhccchHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHH
Confidence 99999885358899999999999999999999999999999999999999888899999999999998999999999999
Q ss_pred HCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425 162 CQGVRVFVTAGLATRFILCQPFNIRVFIGFG 192 (193)
Q Consensus 162 ~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~ 192 (193)
.+|++++++++++++.+.++++|++.+++++
T Consensus 159 ~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~ 189 (320)
T cd05286 159 ALGATVIGTVSSEEKAELARAAGADHVINYR 189 (320)
T ss_pred HcCCEEEEEcCCHHHHHHHHHCCCCEEEeCC
Confidence 9999999999999999999999998888754
No 104
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=99.96 E-value=4e-28 Score=194.59 Aligned_cols=186 Identities=30% Similarity=0.420 Sum_probs=165.0
Q ss_pred EEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCCC
Q 029425 2 KAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKV 81 (193)
Q Consensus 2 ~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~~ 81 (193)
||+++.+++. .+++++.+.|.+.+++++|++.++++|+.|.....+.+.. ..+|.++|+|++|+|+++|+++.+|++
T Consensus 1 ~~~~~~~~~~--~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~-~~~p~~~g~e~~G~v~~~g~~~~~~~~ 77 (330)
T cd08245 1 KAAVVHAAGG--PLEPEEVPVPEPGPGEVLIKIEACGVCHTDLHAAEGDWGG-SKYPLVPGHEIVGEVVEVGAGVEGRKV 77 (330)
T ss_pred CeEEEecCCC--CceEEeccCCCCCCCeEEEEEEEEeccHHHHHHHcCCCCC-CCCCcccCccceEEEEEECCCCccccc
Confidence 6888988753 3889999999999999999999999999999888876542 235789999999999999999999999
Q ss_pred CCEEEE----------------------------EccCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHH
Q 029425 82 GDQVCA----------------------------LLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFM 133 (193)
Q Consensus 82 G~~V~~----------------------------~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~ 133 (193)
||+|+. +...|+|++|+.++.+.++++|+++++.+++.++..+.++|+++..
T Consensus 78 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~~~~l~~~~~ta~~~l~~ 157 (330)
T cd08245 78 GDRVGVGWLVGSCGRCEYCRRGLENLCQKAVNTGYTTQGGYAEYMVADAEYTVLLPDGLPLAQAAPLLCAGITVYSALRD 157 (330)
T ss_pred CCEEEEccccCCCCCChhhhCcCcccCcCccccCcccCCccccEEEEcHHHeEECCCCCCHHHhhhhhhhHHHHHHHHHh
Confidence 999973 2135889999999999999999999999999999999999999854
Q ss_pred hcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425 134 TSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFG 192 (193)
Q Consensus 134 ~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~ 192 (193)
.+++++++++|+|+ |.+|++++++++.+|++|+++++++++.++++++|++.+++++
T Consensus 158 -~~~~~~~~vlI~g~-g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~ 214 (330)
T cd08245 158 -AGPRPGERVAVLGI-GGLGHLAVQYARAMGFETVAITRSPDKRELARKLGADEVVDSG 214 (330)
T ss_pred -hCCCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCcEEeccC
Confidence 78899999999976 7799999999999999999999999999999999998888764
No 105
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.96 E-value=8.5e-28 Score=193.83 Aligned_cols=185 Identities=29% Similarity=0.426 Sum_probs=156.4
Q ss_pred CEEEEEcCCCCCCceEEEeecCCCC-CCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCC
Q 029425 1 MKAIVITQPGSPEVLQLQEVEDPQI-KDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRW 79 (193)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~-~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~ 79 (193)
||++++++++. +++++.+.|.| +++|++||+.++++|++|+..+.|.++. ..|.++|||++|+|+++|+++..+
T Consensus 1 m~~~~~~~~~~---~~~~~~~~p~~~~~~ev~V~v~~~~i~~~d~~~~~g~~~~--~~~~~~g~e~~G~V~~vG~~v~~~ 75 (345)
T cd08287 1 MRATVIHGPGD---IRVEEVPDPVIEEPTDAVIRVVATCVCGSDLWPYRGVSPT--RAPAPIGHEFVGVVEEVGSEVTSV 75 (345)
T ss_pred CceeEEecCCc---eeEEeCCCCCCCCCCeEEEEEeeeeecccchhhhcCCCCC--CCCcccccceEEEEEEeCCCCCcc
Confidence 89999987553 88999999986 8999999999999999999888876642 347899999999999999999999
Q ss_pred CCCCEEEE-Ec--------------------------cCceeeeEEeecCC--ceEECCCCCCHHhHc-----cCcchHH
Q 029425 80 KVGDQVCA-LL--------------------------GGGGYAEKVAVPAG--QVLPVPSGVSLKDAA-----AFPEVAC 125 (193)
Q Consensus 80 ~~G~~V~~-~~--------------------------~~g~~~~~~~~~~~--~~~~~p~~~~~~~aa-----~~~~~~~ 125 (193)
++||+|+. +. .+|+|++|+.++.+ .++++|++++++++. ++...+.
T Consensus 76 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~lP~~l~~~~~~~~~~~~l~~~~~ 155 (345)
T cd08287 76 KPGDFVIAPFAISDGTCPFCRAGFTTSCVHGGFWGAFVDGGQGEYVRVPLADGTLVKVPGSPSDDEDLLPSLLALSDVMG 155 (345)
T ss_pred CCCCEEEeccccCCCCChhhhCcCcccCCCCCcccCCCCCceEEEEEcchhhCceEECCCCCChhhhhhhhhHhhhcHHH
Confidence 99999986 21 13889999999874 899999999872221 2235678
Q ss_pred HHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCE-EEEEeCCcchHHHHhhcCCcEEecCC
Q 029425 126 TVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVR-VFVTAGLATRFILCQPFNIRVFIGFG 192 (193)
Q Consensus 126 ~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~-v~~~~~~~~~~~~~~~~G~~~~~~~~ 192 (193)
++|+++ ...+++++++++|.| +|.+|++++|+++++|++ ++++.+++++.+.++++|++.+++++
T Consensus 156 ~a~~~~-~~~~~~~g~~vlI~g-~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~ga~~v~~~~ 221 (345)
T cd08287 156 TGHHAA-VSAGVRPGSTVVVVG-DGAVGLCAVLAAKRLGAERIIAMSRHEDRQALAREFGATDIVAER 221 (345)
T ss_pred HHHHHH-HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCceEecCC
Confidence 899988 467889999999987 599999999999999996 77777787788888999999999875
No 106
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=99.96 E-value=1.1e-27 Score=196.18 Aligned_cols=176 Identities=27% Similarity=0.392 Sum_probs=152.6
Q ss_pred eEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCC------CCCCCCCCCCCCcceEEEEEEecCCCCCCCCCCEEEE-
Q 029425 15 LQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGS------YPPPKGASPYPGLECSGTILSVGKNVSRWKVGDQVCA- 87 (193)
Q Consensus 15 ~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~------~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~~G~~V~~- 87 (193)
+++++.+.|.+++++++||+.++++|++|+..+.+. ++...++|.++|||++|+|+++|+++..|++||+|+.
T Consensus 39 ~~~~~~~~p~~~~~ev~V~v~a~gi~~~D~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~ 118 (384)
T cd08265 39 LRVEDVPVPNLKPDEILIRVKACGICGSDIHLYETDKDGYILYPGLTEFPVVIGHEFSGVVEKTGKNVKNFEKGDPVTAE 118 (384)
T ss_pred EEEEECCCCCCCCCEEEEEEEEEEEcHhHHHHHcCCCCcccccCcccCCCcccccceEEEEEEECCCCCCCCCCCEEEEC
Confidence 899999999999999999999999999999877632 1222345789999999999999999999999999985
Q ss_pred --------------------------EccCceeeeEEeecCCceEECCCCC-------CHHhHccCcchHHHHHHHHHHh
Q 029425 88 --------------------------LLGGGGYAEKVAVPAGQVLPVPSGV-------SLKDAAAFPEVACTVWSTVFMT 134 (193)
Q Consensus 88 --------------------------~~~~g~~~~~~~~~~~~~~~~p~~~-------~~~~aa~~~~~~~~a~~~l~~~ 134 (193)
+..+|+|++|+.++++.++++|+++ +.. +++++.++.++|+++...
T Consensus 119 ~~~~~~~~~~c~~~~~~~~~~~~~~g~~~~g~~~~~v~v~~~~~~~lP~~~~~~~~~~~~~-~a~~~~~~~ta~~al~~~ 197 (384)
T cd08265 119 EMMWCGMCRACRSGSPNHCKNLKELGFSADGAFAEYIAVNARYAWEINELREIYSEDKAFE-AGALVEPTSVAYNGLFIR 197 (384)
T ss_pred CCCCCCCChhhhCcCcccCCCcceeeecCCCcceeeEEechHHeEECCccccccccCCCHH-HhhhhhHHHHHHHHHHhh
Confidence 3336899999999999999999863 444 556778899999998666
Q ss_pred -cCCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425 135 -SHLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQPFNIRVFIGFG 192 (193)
Q Consensus 135 -~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~~~G~~~~~~~~ 192 (193)
.+++++++++|+|+ |.+|++++++++.+|+ +|+.+++++++.+.++++|++++++++
T Consensus 198 ~~~~~~g~~VlV~g~-g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~~g~~~~v~~~ 256 (384)
T cd08265 198 GGGFRPGAYVVVYGA-GPIGLAAIALAKAAGASKVIAFEISEERRNLAKEMGADYVFNPT 256 (384)
T ss_pred cCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEEccc
Confidence 68999999999975 9999999999999999 799999888899999999999999875
No 107
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=99.96 E-value=1.6e-27 Score=188.28 Aligned_cols=191 Identities=37% Similarity=0.626 Sum_probs=168.6
Q ss_pred CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCC--CCCCCCCCCCcceEEEEEEecCCCCC
Q 029425 1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYP--PPKGASPYPGLECSGTILSVGKNVSR 78 (193)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~--~~~~~p~~lg~e~~G~V~~vG~~~~~ 78 (193)
||++++..++....+.+++.+.|.+++++++||+.++++|+.|+..+.+... .....|..+|+|++|+|+.+|+++.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~ 80 (309)
T cd05289 1 MKAVRIHEYGGPEVLELADVPTPEPGPGEVLVKVHAAGVNPVDLKIREGLLKAAFPLTLPLIPGHDVAGVVVAVGPGVTG 80 (309)
T ss_pred CceEEEcccCCccceeecccCCCCCCCCeEEEEEEEeeCCHHHHHHhcCCccccCCCCCCCccccceeEEEEeeCCCCCC
Confidence 8999999887766677777777888999999999999999999988877642 11234789999999999999999999
Q ss_pred CCCCCEEEEEc---cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHH
Q 029425 79 WKVGDQVCALL---GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTF 155 (193)
Q Consensus 79 ~~~G~~V~~~~---~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~ 155 (193)
+++||+|.++. ..|+|++|+.++...++++|+++++.+++.++..+.++++++.....+.++++++|+|++|.+|++
T Consensus 81 ~~~G~~V~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vlv~g~~g~~g~~ 160 (309)
T cd05289 81 FKVGDEVFGMTPFTRGGAYAEYVVVPADELALKPANLSFEEAAALPLAGLTAWQALFELGGLKAGQTVLIHGAAGGVGSF 160 (309)
T ss_pred CCCCCEEEEccCCCCCCcceeEEEecHHHhccCCCCCCHHHHHhhhHHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHH
Confidence 99999999985 258899999999999999999999999988999999999999777778999999999998999999
Q ss_pred HHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425 156 AIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFG 192 (193)
Q Consensus 156 ~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~ 192 (193)
++++++.+|++++.++.++ +.+.++++|++.+++++
T Consensus 161 ~~~~a~~~g~~v~~~~~~~-~~~~~~~~g~~~~~~~~ 196 (309)
T cd05289 161 AVQLAKARGARVIATASAA-NADFLRSLGADEVIDYT 196 (309)
T ss_pred HHHHHHHcCCEEEEEecch-hHHHHHHcCCCEEEeCC
Confidence 9999999999999998777 88888889988887754
No 108
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.96 E-value=2e-27 Score=191.73 Aligned_cols=184 Identities=27% Similarity=0.356 Sum_probs=157.0
Q ss_pred EEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCC-CCC-CCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425 3 AIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGS-YPP-PKGASPYPGLECSGTILSVGKNVSRWK 80 (193)
Q Consensus 3 a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~-~~~-~~~~p~~lg~e~~G~V~~vG~~~~~~~ 80 (193)
|+++++++ .+.+++.+.|.+.++|++||+.++++|+.|...+.+. ... ....|.++|+|++|+|+++|+++.+|+
T Consensus 1 ~~~~~~~~---~~~~~~~~~~~l~~~~vlV~v~~~~l~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~ 77 (343)
T cd05285 1 AAVLHGPG---DLRLEERPIPEPGPGEVLVRVRAVGICGSDVHYYKHGRIGDFVVKEPMVLGHESAGTVVAVGSGVTHLK 77 (343)
T ss_pred CceEecCC---ceeEEECCCCCCCCCeEEEEEEEeeEccccHHHHccCCCcccCCCCCcccCcceeEEEEeeCCCCCCCC
Confidence 35667653 3888999999999999999999999999998766422 111 112467899999999999999999999
Q ss_pred CCCEEEE------------------------E----ccCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHH
Q 029425 81 VGDQVCA------------------------L----LGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVF 132 (193)
Q Consensus 81 ~G~~V~~------------------------~----~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~ 132 (193)
+||+|++ + ...|+|++|+.++++.++++|+++++++++.+ .++.++|+++
T Consensus 78 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lP~~~~~~~aa~~-~~~~~a~~~~- 155 (343)
T cd05285 78 VGDRVAIEPGVPCRTCEFCKSGRYNLCPDMRFAATPPVDGTLCRYVNHPADFCHKLPDNVSLEEGALV-EPLSVGVHAC- 155 (343)
T ss_pred CCCEEEEccccCCCCChhHhCcCcccCcCccccccccCCCceeeeEEecHHHcEECcCCCCHHHhhhh-hHHHHHHHHH-
Confidence 9999986 1 02588999999999999999999999998766 6788899887
Q ss_pred HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCE-EEEEeCCcchHHHHhhcCCcEEecCC
Q 029425 133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVR-VFVTAGLATRFILCQPFNIRVFIGFG 192 (193)
Q Consensus 133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~-v~~~~~~~~~~~~~~~~G~~~~~~~~ 192 (193)
...+++++++++|+|+ |.+|++++|+|+++|++ |+++++++++.++++++|++.+++++
T Consensus 156 ~~~~~~~g~~vlI~g~-g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~ 215 (343)
T cd05285 156 RRAGVRPGDTVLVFGA-GPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKELGATHTVNVR 215 (343)
T ss_pred HhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCcEEeccc
Confidence 7889999999999875 99999999999999997 88898899999999999999999875
No 109
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=99.96 E-value=2.9e-27 Score=190.34 Aligned_cols=182 Identities=25% Similarity=0.369 Sum_probs=154.5
Q ss_pred EEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhc-CCCC-CCCCCCCCCCcceEEEEEEecCCCCCCCCC
Q 029425 5 VITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRK-GSYP-PPKGASPYPGLECSGTILSVGKNVSRWKVG 82 (193)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~-~~~~-~~~~~p~~lg~e~~G~V~~vG~~~~~~~~G 82 (193)
++++.+ .+++++.+.|+++++||+||+.++++|++|...+. +.+. .....|.++|+|++|+|+++|+++.+|++|
T Consensus 2 ~~~~~~---~~~~~~~~~p~l~~~~v~I~v~~~~i~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~vG~~v~~~~~G 78 (339)
T cd08232 2 VIHAAG---DLRVEERPAPEPGPGEVRVRVAAGGICGSDLHYYQHGGFGTVRLREPMVLGHEVSGVVEAVGPGVTGLAPG 78 (339)
T ss_pred eeccCC---ceEEEEcCCCCCCCCEEEEEEEEEEECcccHHHHcCCCCCcccccCCeecCccceEEEEeeCCCCCcCCCC
Confidence 445443 48999999999999999999999999999987763 3221 112347789999999999999999999999
Q ss_pred CEEEEE--------------------------------ccCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHH
Q 029425 83 DQVCAL--------------------------------LGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWST 130 (193)
Q Consensus 83 ~~V~~~--------------------------------~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~ 130 (193)
|+|+.. ..+|+|++|+.++.+.++++|+++++++++. ..+++++|++
T Consensus 79 d~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~~~~~~aa~-~~~~~~a~~~ 157 (339)
T cd08232 79 QRVAVNPSRPCGTCDYCRAGRPNLCLNMRFLGSAMRFPHVQGGFREYLVVDASQCVPLPDGLSLRRAAL-AEPLAVALHA 157 (339)
T ss_pred CEEEEccCCcCCCChHHhCcCcccCccccceeeccccCCCCCceeeEEEechHHeEECcCCCCHHHhhh-cchHHHHHHH
Confidence 999862 1258999999999999999999999988865 6788899999
Q ss_pred HHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425 131 VFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQPFNIRVFIGFG 192 (193)
Q Consensus 131 l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~~~G~~~~~~~~ 192 (193)
+.....+ ++++++|.|+ |.+|++++|+++++|+ +++++++++++.+.++++|++.+++++
T Consensus 158 l~~~~~~-~~~~VLI~g~-g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~~~vi~~~ 218 (339)
T cd08232 158 VNRAGDL-AGKRVLVTGA-GPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGADETVNLA 218 (339)
T ss_pred HHhcCCC-CCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCCEEEcCC
Confidence 8666666 8999999875 9999999999999999 789999888888988999999999875
No 110
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=99.96 E-value=7.1e-27 Score=185.52 Aligned_cols=191 Identities=39% Similarity=0.632 Sum_probs=168.8
Q ss_pred CEEEEEcCCCCCCceEEEeecCCCCC-CCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCC
Q 029425 1 MKAIVITQPGSPEVLQLQEVEDPQIK-DDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRW 79 (193)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~-~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~ 79 (193)
|+|+++..++.+..+++.+.+ |.+. +++++|++.++++|+.|+....+.+......|.++|+|++|+|..+|+++.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~ 79 (323)
T cd08241 1 MKAVVCKELGGPEDLVLEEVP-PEPGAPGEVRIRVEAAGVNFPDLLMIQGKYQVKPPLPFVPGSEVAGVVEAVGEGVTGF 79 (323)
T ss_pred CeEEEEecCCCcceeEEecCC-CCCCCCCeEEEEEEEEecCHHHHHHHcCCCCCCCCCCCcccceeEEEEEEeCCCCCCC
Confidence 899999877766668887777 6655 59999999999999999988777654333346789999999999999999999
Q ss_pred CCCCEEEEEccCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHH
Q 029425 80 KVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQM 159 (193)
Q Consensus 80 ~~G~~V~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~ 159 (193)
++||+|.++...|++++|+.++.+.++++|++++..+++.+..++.++++++....+++++++++|+|++|.+|++++++
T Consensus 80 ~~G~~V~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~~~~g~~~~~~ 159 (323)
T cd08241 80 KVGDRVVALTGQGGFAEEVVVPAAAVFPLPDGLSFEEAAALPVTYGTAYHALVRRARLQPGETVLVLGAAGGVGLAAVQL 159 (323)
T ss_pred CCCCEEEEecCCceeEEEEEcCHHHceeCCCCCCHHHHhhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHH
Confidence 99999999864688999999999999999999998888889999999999987788899999999999999999999999
Q ss_pred HHHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425 160 GKCQGVRVFVTAGLATRFILCQPFNIRVFIGFG 192 (193)
Q Consensus 160 ~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~ 192 (193)
++.+|++|+.++.++++.+.++++|++.+++++
T Consensus 160 a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~ 192 (323)
T cd08241 160 AKALGARVIAAASSEEKLALARALGADHVIDYR 192 (323)
T ss_pred HHHhCCEEEEEeCCHHHHHHHHHcCCceeeecC
Confidence 999999999999999999999889988877654
No 111
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.96 E-value=4.6e-27 Score=186.85 Aligned_cols=186 Identities=35% Similarity=0.549 Sum_probs=162.2
Q ss_pred EcCCCCCCce--EEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCC--CCCCCCCCCcceEEEEEEecCCCCCCCC
Q 029425 6 ITQPGSPEVL--QLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPP--PKGASPYPGLECSGTILSVGKNVSRWKV 81 (193)
Q Consensus 6 ~~~~~~~~~~--~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~--~~~~p~~lg~e~~G~V~~vG~~~~~~~~ 81 (193)
.+..+++..+ ++.+.+.|++.+++|+|++.++++|+.|.....+.+.. ....|..+|+|++|+|.++|+++..+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~ 82 (319)
T cd08267 3 YTRYGSPEVLLLLEVEVPIPTPKPGEVLVKVHAASVNPVDWKLRRGPPKLLLGRPFPPIPGMDFAGEVVAVGSGVTRFKV 82 (319)
T ss_pred eCCCCChhhhhhccccCCCCCCCCCEEEEEEEEeeCCHHHHHHHcCCCcccccCCCCCcccceeeEEEEEeCCCCCCCCC
Confidence 3445555444 77888889999999999999999999999888776521 1224678999999999999999999999
Q ss_pred CCEEEEEcc---CceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHH
Q 029425 82 GDQVCALLG---GGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQ 158 (193)
Q Consensus 82 G~~V~~~~~---~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~ 158 (193)
||+|+.+.. .|+|++|+.++.+.++++|+++++++++.+++++.++|+++.....++++++++|+|++|.+|+++++
T Consensus 83 Gd~V~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~vli~g~~g~~g~~~~~ 162 (319)
T cd08267 83 GDEVFGRLPPKGGGALAEYVVAPESGLAKKPEGVSFEEAAALPVAGLTALQALRDAGKVKPGQRVLINGASGGVGTFAVQ 162 (319)
T ss_pred CCEEEEeccCCCCceeeEEEEechhheEECCCCCCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHH
Confidence 999998853 58899999999999999999999999999999999999999877789999999999999999999999
Q ss_pred HHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425 159 MGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFG 192 (193)
Q Consensus 159 ~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~ 192 (193)
+++.+|++|+.++++ ++.+.++++|++.+++++
T Consensus 163 la~~~g~~v~~~~~~-~~~~~~~~~g~~~~~~~~ 195 (319)
T cd08267 163 IAKALGAHVTGVCST-RNAELVRSLGADEVIDYT 195 (319)
T ss_pred HHHHcCCEEEEEeCH-HHHHHHHHcCCCEeecCC
Confidence 999999999998865 888999999998888764
No 112
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=99.96 E-value=3e-27 Score=181.08 Aligned_cols=177 Identities=17% Similarity=0.190 Sum_probs=148.9
Q ss_pred CCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEec--CCCCCCCCCCEEEEEc
Q 029425 12 PEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVG--KNVSRWKVGDQVCALL 89 (193)
Q Consensus 12 ~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG--~~~~~~~~G~~V~~~~ 89 (193)
++.|++++.++|.|+++|+|+|+.|.|++|+.+..++..... -.|.-+|...+|.++... |..+.|++||.|.+..
T Consensus 24 ~d~F~lee~~vp~p~~GqvLl~~~ylS~DPymRgrm~d~~SY--~~P~~lG~~~~gg~V~~Vv~S~~~~f~~GD~V~~~~ 101 (340)
T COG2130 24 PDDFRLEEVDVPEPGEGQVLLRTLYLSLDPYMRGRMSDAPSY--APPVELGEVMVGGTVAKVVASNHPGFQPGDIVVGVS 101 (340)
T ss_pred CCCceeEeccCCCCCcCceEEEEEEeccCHHHeecccCCccc--CCCcCCCceeECCeeEEEEecCCCCCCCCCEEEecc
Confidence 356999999999999999999999999999877655543221 236667766554333222 6678999999999885
Q ss_pred cCceeeeEEeecCCceEECCCCC--CHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEE
Q 029425 90 GGGGYAEKVAVPAGQVLPVPSGV--SLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRV 167 (193)
Q Consensus 90 ~~g~~~~~~~~~~~~~~~~p~~~--~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v 167 (193)
+|++|..++.+.+.++.++. -......+.++..|||.+|.+.++.++|++++|.+|+|.+|..+.|+|+..|++|
T Consensus 102 ---GWq~y~i~~~~~l~Kvd~~~~pl~~~LgvLGmpG~TAY~gLl~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~rV 178 (340)
T COG2130 102 ---GWQEYAISDGEGLRKLDPSPAPLSAYLGVLGMPGLTAYFGLLDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGCRV 178 (340)
T ss_pred ---cceEEEeechhhceecCCCCCCcchHHhhcCCchHHHHHHHHHhcCCCCCCEEEEEecccccchHHHHHHHhhCCeE
Confidence 49999999999999886432 1234567899999999999999999999999999999999999999999999999
Q ss_pred EEEeCCcchHHHHhh-cCCcEEecCCC
Q 029425 168 FVTAGLATRFILCQP-FNIRVFIGFGY 193 (193)
Q Consensus 168 ~~~~~~~~~~~~~~~-~G~~~~~~~~~ 193 (193)
+.+..+++|.+++++ +|+|.+|||++
T Consensus 179 VGiaGg~eK~~~l~~~lGfD~~idyk~ 205 (340)
T COG2130 179 VGIAGGAEKCDFLTEELGFDAGIDYKA 205 (340)
T ss_pred EEecCCHHHHHHHHHhcCCceeeecCc
Confidence 999999999999998 99999999985
No 113
>cd08251 polyketide_synthase polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a
Probab=99.96 E-value=7.9e-27 Score=183.98 Aligned_cols=170 Identities=32% Similarity=0.468 Sum_probs=155.3
Q ss_pred CCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCCCCCEEEEEc--cCceeeeEEe
Q 029425 22 DPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKVGDQVCALL--GGGGYAEKVA 99 (193)
Q Consensus 22 ~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~~G~~V~~~~--~~g~~~~~~~ 99 (193)
.|++.+++++||+.++++|+.|+..+.+.++....+|.++|+|++|+|+++|+++.+|++||+|+++. .+|+|++|+.
T Consensus 2 ~p~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~g~~~~~~~ 81 (303)
T cd08251 2 VAPPGPGEVRIQVRAFSLNFGDLLCVRGLYPTMPPYPFTPGFEASGVVRAVGPHVTRLAVGDEVIAGTGESMGGHATLVT 81 (303)
T ss_pred CCCCCCCEEEEEEEEeecChHHHHHHCCCCCCCCCCCCCcCceeeEEEEEECCCCCCCCCCCEEEEecCCCCcceeeEEE
Confidence 46789999999999999999999988887654445688999999999999999999999999999875 2488999999
Q ss_pred ecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHH
Q 029425 100 VPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFIL 179 (193)
Q Consensus 100 ~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~ 179 (193)
++.+.++++|+++++++++.++..+.++|+++ ...+++++++++|+++++.+|++++++++++|++++.+++++++.+.
T Consensus 82 ~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l-~~~~~~~g~~vli~~~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~ 160 (303)
T cd08251 82 VPEDQVVRKPASLSFEEACALPVVFLTVIDAF-ARAGLAKGEHILIQTATGGTGLMAVQLARLKGAEIYATASSDDKLEY 160 (303)
T ss_pred ccHHHeEECCCCCCHHHHHHhHHHHHHHHHHH-HhcCCCCCCEEEEecCCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHH
Confidence 99999999999999999999999999999998 57889999999999999999999999999999999999999999999
Q ss_pred HhhcCCcEEecCC
Q 029425 180 CQPFNIRVFIGFG 192 (193)
Q Consensus 180 ~~~~G~~~~~~~~ 192 (193)
++++|++.+++++
T Consensus 161 ~~~~g~~~~~~~~ 173 (303)
T cd08251 161 LKQLGVPHVINYV 173 (303)
T ss_pred HHHcCCCEEEeCC
Confidence 9999999888764
No 114
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=99.95 E-value=1.5e-26 Score=185.22 Aligned_cols=186 Identities=20% Similarity=0.273 Sum_probs=158.3
Q ss_pred EEEEEcCCC----CCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCC--CCCCCCCCCCcceEEEEEEecCC
Q 029425 2 KAIVITQPG----SPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYP--PPKGASPYPGLECSGTILSVGKN 75 (193)
Q Consensus 2 ~a~~~~~~~----~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~--~~~~~p~~lg~e~~G~V~~vG~~ 75 (193)
|+|++...+ .+..+++++.+.|.+.+++++||+.++++|+.|.....+... .+...+.++|+|++|+|+++|++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~Vkv~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~ 82 (329)
T cd05288 3 RQVVLAKRPEGPPPPDDFELVEVPLPELKDGEVLVRTLYLSVDPYMRGWMSDAKSYSPPVQLGEPMRGGGVGEVVESRSP 82 (329)
T ss_pred cEEEEeccCCCCCCccceeEEeccCCCCCCCeEEEEEEEEecCHHHhhhhccCcccCCCccCCCcccCceEEEEEecCCC
Confidence 678887755 456799999999999999999999999999988765554321 11112457899999999999964
Q ss_pred CCCCCCCCEEEEEccCceeeeEEeecC-CceEECCCCCC--HHhHcc-CcchHHHHHHHHHHhcCCCCCCeEEEEcCCch
Q 029425 76 VSRWKVGDQVCALLGGGGYAEKVAVPA-GQVLPVPSGVS--LKDAAA-FPEVACTVWSTVFMTSHLSPGESFLVHGGSSG 151 (193)
Q Consensus 76 ~~~~~~G~~V~~~~~~g~~~~~~~~~~-~~~~~~p~~~~--~~~aa~-~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~ 151 (193)
.+++||+|+++ ++|++|+.++. +.++++|++++ +.+++. ++.++.++|+++.....+.++++++|+|++|.
T Consensus 83 --~~~~Gd~V~~~---~~~~~~~~v~~~~~~~~lP~~~~~~~~~~~~~l~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~ 157 (329)
T cd05288 83 --DFKVGDLVSGF---LGWQEYAVVDGASGLRKLDPSLGLPLSAYLGVLGMTGLTAYFGLTEIGKPKPGETVVVSAAAGA 157 (329)
T ss_pred --CCCCCCEEecc---cceEEEEEecchhhcEECCcccCCCHHHHHHhcccHHHHHHHHHHhccCCCCCCEEEEecCcch
Confidence 79999999887 36999999999 99999999985 444444 88999999999977788899999999998899
Q ss_pred HHHHHHHHHHHCCCEEEEEeCCcchHHHHhh-cCCcEEecCC
Q 029425 152 IGTFAIQMGKCQGVRVFVTAGLATRFILCQP-FNIRVFIGFG 192 (193)
Q Consensus 152 ~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~-~G~~~~~~~~ 192 (193)
+|++++++++.+|++|+.+++++++.+.+++ +|++.+++++
T Consensus 158 ig~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~~g~~~~~~~~ 199 (329)
T cd05288 158 VGSVVGQIAKLLGARVVGIAGSDEKCRWLVEELGFDAAINYK 199 (329)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhhcCCceEEecC
Confidence 9999999999999999999999999999988 9999998875
No 115
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=99.95 E-value=1.1e-26 Score=187.38 Aligned_cols=186 Identities=31% Similarity=0.336 Sum_probs=157.2
Q ss_pred CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCC--CCCCCCCCCCCcceEEEEEEecCCCCC
Q 029425 1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSY--PPPKGASPYPGLECSGTILSVGKNVSR 78 (193)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~--~~~~~~p~~lg~e~~G~V~~vG~~~~~ 78 (193)
||+++.+.++. .+++.+.+.|.++++|++||+.++++|+.|+..+.+.. ......|.++|+|++|+|+.+|++++.
T Consensus 1 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~v~~ 78 (341)
T cd05281 1 MKAIVKTKAGP--GAELVEVPVPKPGPGEVLIKVLAASICGTDVHIYEWDEWAQSRIKPPLIFGHEFAGEVVEVGEGVTR 78 (341)
T ss_pred CcceEEecCCC--ceEEEeCCCCCCCCCeEEEEEEEEEEcccchHHHcCCCCccccCCCCcccccceEEEEEEECCCCCC
Confidence 89999997664 48889999999999999999999999999988754421 111234678999999999999999999
Q ss_pred CCCCCEEEEEc---------------------------cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHH
Q 029425 79 WKVGDQVCALL---------------------------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTV 131 (193)
Q Consensus 79 ~~~G~~V~~~~---------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l 131 (193)
+++||+|.++. ..|+|++|+.++.+.++++|++++++++ +++.++.++++++
T Consensus 79 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~lP~~~~~~~a-~~~~~~~~a~~~~ 157 (341)
T cd05281 79 VKVGDYVSAETHIVCGKCYQCRTGNYHVCQNTKILGVDTDGCFAEYVVVPEENLWKNDKDIPPEIA-SIQEPLGNAVHTV 157 (341)
T ss_pred CCCCCEEEECCccCCCCChHHHCcCcccCcccceEeccCCCcceEEEEechHHcEECcCCCCHHHh-hhhhHHHHHHHHH
Confidence 99999998751 3588999999999999999999998544 5777888888877
Q ss_pred HHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425 132 FMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQPFNIRVFIGFG 192 (193)
Q Consensus 132 ~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~~~G~~~~~~~~ 192 (193)
. ...+++++++|+|+ |.+|++++++++.+|+ +++++.+++++.+.++++|++++++++
T Consensus 158 ~--~~~~~g~~vlV~g~-g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~ 216 (341)
T cd05281 158 L--AGDVSGKSVLITGC-GPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKMGADVVINPR 216 (341)
T ss_pred H--hcCCCCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCcceeeCcc
Confidence 4 45578999999875 9999999999999999 788888888899999999999888764
No 116
>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.95 E-value=3.2e-26 Score=183.31 Aligned_cols=190 Identities=38% Similarity=0.583 Sum_probs=163.2
Q ss_pred EEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCCC
Q 029425 2 KAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKV 81 (193)
Q Consensus 2 ~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~~ 81 (193)
||+++...+.+..+++.+.+.|.+.+++++||+.++++|+.|.....+.+......|.++|+|++|+|+.+|+++.++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~~ 80 (337)
T cd08275 1 RAVVLTGFGGLDKLKVEKEALPEPSSGEVRVRVEACGLNFADLMARQGLYDSAPKPPFVPGFECAGTVEAVGEGVKDFKV 80 (337)
T ss_pred CeEEEcCCCCccceEEEecCCCCCCCCEEEEEEEEEecCHHHHHHHCCCCCCCCCCCCCCcceeEEEEEEECCCCcCCCC
Confidence 57777777766678888888788899999999999999999998887765433345778999999999999999999999
Q ss_pred CCEEEEEccCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHH
Q 029425 82 GDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGK 161 (193)
Q Consensus 82 G~~V~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~ 161 (193)
||+|+++..+|+|++|+.++.+.++++|+++++.+++.++.++.++|+++....+++++++++|+|++|.+|++++++++
T Consensus 81 G~~V~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~g~~g~~~~~~a~ 160 (337)
T cd08275 81 GDRVMGLTRFGGYAEVVNVPADQVFPLPDGMSFEEAAAFPVNYLTAYYALFELGNLRPGQSVLVHSAAGGVGLAAGQLCK 160 (337)
T ss_pred CCEEEEecCCCeeeeEEEecHHHeEECCCCCCHHHHhhhhHHHHHHHHHHHHhhCCCCCCEEEEEcCcchHHHHHHHHHH
Confidence 99999997668999999999999999999999999998999999999998888899999999999999999999999999
Q ss_pred HC-CCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425 162 CQ-GVRVFVTAGLATRFILCQPFNIRVFIGFG 192 (193)
Q Consensus 162 ~~-g~~v~~~~~~~~~~~~~~~~G~~~~~~~~ 192 (193)
.+ +..++.. ..+++.+.++++|++.+++++
T Consensus 161 ~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~ 191 (337)
T cd08275 161 TVPNVTVVGT-ASASKHEALKENGVTHVIDYR 191 (337)
T ss_pred HccCcEEEEe-CCHHHHHHHHHcCCcEEeeCC
Confidence 98 3333322 234578888889998888764
No 117
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=99.95 E-value=2.4e-26 Score=182.58 Aligned_cols=175 Identities=23% Similarity=0.300 Sum_probs=150.6
Q ss_pred CceEEEeecCCCCCCCeEEEEEeEecCChhhhhhh-cCCCCCC-CCCCCCCCcceEEEEEEecCCCCCCCCCCEEEEEcc
Q 029425 13 EVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQR-KGSYPPP-KGASPYPGLECSGTILSVGKNVSRWKVGDQVCALLG 90 (193)
Q Consensus 13 ~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~-~~~~~~~-~~~p~~lg~e~~G~V~~vG~~~~~~~~G~~V~~~~~ 90 (193)
+.+++++++.|++.++|++||+.++++|+.|...+ .+..... ...|.++|+|++|+|+++|+++.++++||+|+.+.
T Consensus 5 ~~~~~~~~~~~~l~~~ev~v~v~~~~i~~~d~~~~~~g~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~- 83 (312)
T cd08269 5 GRFEVEEHPRPTPGPGQVLVRVEGCGVCGSDLPAFNQGRPWFVYPAEPGGPGHEGWGRVVALGPGVRGLAVGDRVAGLS- 83 (312)
T ss_pred CeeEEEECCCCCCCCCeEEEEEEEeeecccchHHHccCCCCcccCCCCcccceeeEEEEEEECCCCcCCCCCCEEEEec-
Confidence 45899999999999999999999999999999877 6653221 12477899999999999999999999999999885
Q ss_pred CceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCE-EEE
Q 029425 91 GGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVR-VFV 169 (193)
Q Consensus 91 ~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~-v~~ 169 (193)
.|+|++|+.++.+.++++|+++ .+++....++.++++++. ..+++++++++|+| .|.+|.+++++|+.+|++ +++
T Consensus 84 ~g~~~~~~~v~~~~~~~lP~~~--~~~~~~~~~~~~a~~~~~-~~~~~~~~~vlI~g-~g~vg~~~~~la~~~g~~~v~~ 159 (312)
T cd08269 84 GGAFAEYDLADADHAVPLPSLL--DGQAFPGEPLGCALNVFR-RGWIRAGKTVAVIG-AGFIGLLFLQLAAAAGARRVIA 159 (312)
T ss_pred CCcceeeEEEchhheEECCCch--hhhHHhhhhHHHHHHHHH-hcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEE
Confidence 5889999999999999999988 233322377889999885 78899999999997 599999999999999998 999
Q ss_pred EeCCcchHHHHhhcCCcEEecCC
Q 029425 170 TAGLATRFILCQPFNIRVFIGFG 192 (193)
Q Consensus 170 ~~~~~~~~~~~~~~G~~~~~~~~ 192 (193)
+.+++++.++++++|++.+++++
T Consensus 160 ~~~~~~~~~~~~~~g~~~~~~~~ 182 (312)
T cd08269 160 IDRRPARLALARELGATEVVTDD 182 (312)
T ss_pred ECCCHHHHHHHHHhCCceEecCC
Confidence 99999899988999998888753
No 118
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=99.95 E-value=1.8e-26 Score=185.98 Aligned_cols=180 Identities=29% Similarity=0.328 Sum_probs=150.9
Q ss_pred cCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCC--CCCCCCCCCCcceEEEEEEecCCCCCCCCCCE
Q 029425 7 TQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYP--PPKGASPYPGLECSGTILSVGKNVSRWKVGDQ 84 (193)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~--~~~~~p~~lg~e~~G~V~~vG~~~~~~~~G~~ 84 (193)
++++.+ +++++.+.|.++++|++||+.++++|+.|+..+.+... .....|.++|+|++|+|+++|+++.+|++||+
T Consensus 5 ~~~~~~--~~l~~~~~p~~~~~ev~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~ 82 (340)
T TIGR00692 5 TKPGYG--AELTEVPVPEPGPGEVLIKVLATSICGTDVHIYNWDEWAQSRIKPPQVVGHEVAGEVVGIGPGVEGIKVGDY 82 (340)
T ss_pred ccCCCC--cEEEECCCCCCCCCeEEEEEEEEEEcccCHHHHcCCCCCCCCCCCCcccccceEEEEEEECCCCCcCCCCCE
Confidence 345544 78889999999999999999999999999987655421 11224668999999999999999999999999
Q ss_pred EEE---------------------------EccCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCC
Q 029425 85 VCA---------------------------LLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHL 137 (193)
Q Consensus 85 V~~---------------------------~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~ 137 (193)
|+. +...|+|++|+.++++.++++|++++++++ +++.++.++++++ ....
T Consensus 83 V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~a-~~~~~~~~a~~~~--~~~~ 159 (340)
T TIGR00692 83 VSVETHIVCGKCYACRRGQYHVCQNTKIFGVDTDGCFAEYAVVPAQNIWKNPKSIPPEYA-TIQEPLGNAVHTV--LAGP 159 (340)
T ss_pred EEECCcCCCCCChhhhCcChhhCcCcceEeecCCCcceeEEEeehHHcEECcCCCChHhh-hhcchHHHHHHHH--HccC
Confidence 987 224588999999999999999999998655 5778888998876 3457
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHHHCCCE-EEEEeCCcchHHHHhhcCCcEEecCC
Q 029425 138 SPGESFLVHGGSSGIGTFAIQMGKCQGVR-VFVTAGLATRFILCQPFNIRVFIGFG 192 (193)
Q Consensus 138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~~-v~~~~~~~~~~~~~~~~G~~~~~~~~ 192 (193)
+++++++|.|+ |.+|.+++|+++++|++ |+++.+++++.+.++++|++.+++++
T Consensus 160 ~~g~~vlI~~~-g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~ 214 (340)
T TIGR00692 160 ISGKSVLVTGA-GPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKMGATYVVNPF 214 (340)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCcEEEccc
Confidence 89999999775 99999999999999997 88887788888988999998888764
No 119
>PLN02702 L-idonate 5-dehydrogenase
Probab=99.95 E-value=4.8e-26 Score=185.17 Aligned_cols=175 Identities=22% Similarity=0.302 Sum_probs=147.6
Q ss_pred ceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCC--CCCCCCCCCcceEEEEEEecCCCCCCCCCCEEEEEc--
Q 029425 14 VLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPP--PKGASPYPGLECSGTILSVGKNVSRWKVGDQVCALL-- 89 (193)
Q Consensus 14 ~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~--~~~~p~~lg~e~~G~V~~vG~~~~~~~~G~~V~~~~-- 89 (193)
.+++++.+.|.+.++||+||+.++++|++|+..+.+.... ....|.++|||++|+|+++|+++.+|++||+|+..+
T Consensus 28 ~l~~~~~~~p~~~~~ev~Ikv~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~ 107 (364)
T PLN02702 28 TLKIQPFKLPPLGPHDVRVRMKAVGICGSDVHYLKTMRCADFVVKEPMVIGHECAGIIEEVGSEVKHLVVGDRVALEPGI 107 (364)
T ss_pred ceEEEeccCCCCCCCeEEEEEEEEEEchhhhHHHcCCCCccccCCCCcccccceeEEEEEECCCCCCCCCCCEEEEcCCC
Confidence 3788888888899999999999999999999888763211 112477899999999999999999999999998621
Q ss_pred --------------------------cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeE
Q 029425 90 --------------------------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESF 143 (193)
Q Consensus 90 --------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~v 143 (193)
.+|+|++|+.++.+.++++|+++++++++.. .++..+|+++ ...++.+++++
T Consensus 108 ~~~~c~~c~~g~~~~c~~~~~~~~~~~~g~~~~y~~v~~~~~~~~P~~l~~~~aa~~-~~~~~a~~~~-~~~~~~~g~~v 185 (364)
T PLN02702 108 SCWRCNLCKEGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPENVSLEEGAMC-EPLSVGVHAC-RRANIGPETNV 185 (364)
T ss_pred CCCCCcchhCcCcccCCCccccCCCCCCCcccceEEcchHHeEECCCCCCHHHHhhh-hHHHHHHHHH-HhcCCCCCCEE
Confidence 1588999999999999999999999888742 3455688887 67888999999
Q ss_pred EEEcCCchHHHHHHHHHHHCCCE-EEEEeCCcchHHHHhhcCCcEEecC
Q 029425 144 LVHGGSSGIGTFAIQMGKCQGVR-VFVTAGLATRFILCQPFNIRVFIGF 191 (193)
Q Consensus 144 li~ga~g~~G~~~i~~~~~~g~~-v~~~~~~~~~~~~~~~~G~~~~~~~ 191 (193)
+|+|+ |.+|++++++++++|++ ++++.+++++.+.++++|++.++++
T Consensus 186 lI~g~-g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~ 233 (364)
T PLN02702 186 LVMGA-GPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQLGADEIVLV 233 (364)
T ss_pred EEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEec
Confidence 99975 99999999999999995 6777778888999999999988765
No 120
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=99.95 E-value=2.8e-26 Score=178.17 Aligned_cols=163 Identities=37% Similarity=0.621 Sum_probs=147.9
Q ss_pred eEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCCCCCEEEEEc-------------------
Q 029425 29 EVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKVGDQVCALL------------------- 89 (193)
Q Consensus 29 evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~~G~~V~~~~------------------- 89 (193)
||+|++.++++|+.|+..+.+..+.....|.++|+|++|+|.++|+++..|++||+|+++.
T Consensus 1 ~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~G~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~ 80 (271)
T cd05188 1 EVLVRVEAAGLCGTDLHIRRGGYPPPPKLPLILGHEGAGVVVEVGPGVTGVKVGDRVVVLPNLGCGTCELCRELCPGGGI 80 (271)
T ss_pred CeEEEEEEEEecchhHHHHcCCCCcCCCCCcccccccEEEEEEECCCCCcCCCCCEEEEcCCCCCCCCHHHHhhCCCCCE
Confidence 6899999999999999988887652334578999999999999999999999999999875
Q ss_pred ----cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC
Q 029425 90 ----GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV 165 (193)
Q Consensus 90 ----~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~ 165 (193)
..|++++|+.++.+.++++|+++++++++.++.++.++|+++.....++++++++|+|+.+ +|++++++++.+|.
T Consensus 81 ~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~~a~~~l~~~~~~~~~~~vli~g~~~-~G~~~~~~a~~~g~ 159 (271)
T cd05188 81 LGEGLDGGFAEYVVVPADNLVPLPDGLSLEEAALLPEPLATAYHALRRAGVLKPGDTVLVLGAGG-VGLLAAQLAKAAGA 159 (271)
T ss_pred eccccCCcceEEEEechHHeEECCCCCCHHHhhHhcCHHHHHHHHHHhccCCCCCCEEEEECCCH-HHHHHHHHHHHcCC
Confidence 2589999999999999999999999999999999999999997777779999999999866 99999999999999
Q ss_pred EEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425 166 RVFVTAGLATRFILCQPFNIRVFIGFG 192 (193)
Q Consensus 166 ~v~~~~~~~~~~~~~~~~G~~~~~~~~ 192 (193)
+|+++++++++.+.++++|++.+++++
T Consensus 160 ~v~~~~~~~~~~~~~~~~g~~~~~~~~ 186 (271)
T cd05188 160 RVIVTDRSDEKLELAKELGADHVIDYK 186 (271)
T ss_pred eEEEEcCCHHHHHHHHHhCCceeccCC
Confidence 999999999999999999998888764
No 121
>cd05195 enoyl_red enoyl reductase of polyketide synthase. Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase
Probab=99.93 E-value=2.1e-24 Score=168.69 Aligned_cols=161 Identities=34% Similarity=0.535 Sum_probs=146.6
Q ss_pred CeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCCCCCEEEEEccCceeeeEEeecCCceEE
Q 029425 28 DEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLP 107 (193)
Q Consensus 28 ~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~~G~~V~~~~~~g~~~~~~~~~~~~~~~ 107 (193)
+|++||+.++++|++|+....+.++ .+|.++|+|++|+|.++|+++..+++||+|.++. .|+|++|+.++.+.+++
T Consensus 1 ~~v~i~v~~~~~~~~d~~~~~g~~~---~~~~~~g~e~~G~v~~~g~~~~~~~~Gd~V~~~~-~g~~~~~~~~~~~~~~~ 76 (293)
T cd05195 1 DEVEVEVKAAGLNFRDVLVALGLLP---GDETPLGLECSGIVTRVGSGVTGLKVGDRVMGLA-PGAFATHVRVDARLVVK 76 (293)
T ss_pred CceEEEEEEEecCHHHHHHHhCCCC---CCCCccceeeeEEEEeecCCccCCCCCCEEEEEe-cCcccceEEechhheEe
Confidence 5899999999999999998877652 2478999999999999999999999999999885 58899999999999999
Q ss_pred CCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcC--C
Q 029425 108 VPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFN--I 185 (193)
Q Consensus 108 ~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G--~ 185 (193)
+|+++++.+++.++.++.++|.++....+++++++++|+|++|.+|++++++++.+|++++.+++++++.+.++++| +
T Consensus 77 ~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~~~ 156 (293)
T cd05195 77 IPDSLSFEEAATLPVAYLTAYYALVDLARLQKGESVLIHAAAGGVGQAAIQLAQHLGAEVFATVGSEEKREFLRELGGPV 156 (293)
T ss_pred CCCCCCHHHHhhchHHHHHHHHHHHHHhccCCCCEEEEecCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhCCCc
Confidence 99999999999899999999999878889999999999998899999999999999999999999999999998888 6
Q ss_pred cEEecCC
Q 029425 186 RVFIGFG 192 (193)
Q Consensus 186 ~~~~~~~ 192 (193)
+.+++++
T Consensus 157 ~~~~~~~ 163 (293)
T cd05195 157 DHIFSSR 163 (293)
T ss_pred ceEeecC
Confidence 7777654
No 122
>smart00829 PKS_ER Enoylreductase. Enoylreductase in Polyketide synthases.
Probab=99.92 E-value=5.6e-24 Score=166.16 Aligned_cols=156 Identities=34% Similarity=0.537 Sum_probs=143.3
Q ss_pred EEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCCCCCEEEEEccCceeeeEEeecCCceEECCCC
Q 029425 32 IKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSG 111 (193)
Q Consensus 32 V~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~~G~~V~~~~~~g~~~~~~~~~~~~~~~~p~~ 111 (193)
||+.++++|+.|+....+.++ .|.++|+|++|+|+++|+++..|++||+|.++. .|+|++|+.++.+.++++|++
T Consensus 2 i~v~~~~i~~~d~~~~~g~~~----~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~-~g~~~~~~~~~~~~~~~~p~~ 76 (288)
T smart00829 2 VEVRAAGLNFRDVLIALGLLP----GEAVLGGECAGVVTRVGPGVTGLAVGDRVMGLA-PGSFATYVRTDARLVVPIPDG 76 (288)
T ss_pred eeEEEEecCHHHHHHhcCCCC----CCCCCCceeEEEEEeeCCCCcCCCCCCEEEEEc-CCceeeEEEccHHHeEECCCC
Confidence 789999999999998877654 257899999999999999999999999999985 488999999999999999999
Q ss_pred CCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCC--cEEe
Q 029425 112 VSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNI--RVFI 189 (193)
Q Consensus 112 ~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~--~~~~ 189 (193)
+++.+++.++.++.++|+++.....++++++++|+|+.|.+|++++++++++|++|+.+++++++.+.++++|+ +.++
T Consensus 77 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~ 156 (288)
T smart00829 77 LSFEEAATVPVVFLTAYYALVDLARLRPGESVLIHAAAGGVGQAAIQLAQHLGAEVFATAGSPEKRDFLRELGIPDDHIF 156 (288)
T ss_pred CCHHHHHhchHHHHHHHHHHHHHhCCCCCCEEEEecCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCChhhee
Confidence 99999999999999999998788889999999999988999999999999999999999999999999999998 7777
Q ss_pred cCC
Q 029425 190 GFG 192 (193)
Q Consensus 190 ~~~ 192 (193)
+++
T Consensus 157 ~~~ 159 (288)
T smart00829 157 SSR 159 (288)
T ss_pred eCC
Confidence 754
No 123
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=99.92 E-value=2.4e-24 Score=169.44 Aligned_cols=131 Identities=24% Similarity=0.304 Sum_probs=116.7
Q ss_pred CCCcceEEEEEEecCCCC------CCCCCCEEEEEc----------------------------------cCceeeeEEe
Q 029425 60 YPGLECSGTILSVGKNVS------RWKVGDQVCALL----------------------------------GGGGYAEKVA 99 (193)
Q Consensus 60 ~lg~e~~G~V~~vG~~~~------~~~~G~~V~~~~----------------------------------~~g~~~~~~~ 99 (193)
++|||++|+|+++|+++. .+++||||+..+ .+|+|++|+.
T Consensus 1 v~GHE~~G~V~~vG~~v~~~~~~~~~~~GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~~~~~~~~G~~aey~~ 80 (280)
T TIGR03366 1 VLGHEIVGEVVALRGGFTPADDGVPLRLGQRVVWSVTVPCGRCFRCRRGLPQKCDSLRKYGHEALDSGWPLSGGYAEHCH 80 (280)
T ss_pred CCCcccceEEEEeCCCccccccCCCCCCCCEEEEcCCCCCCCChhhhCcCcccCCChhhcCcccccCCccccccceeeEE
Confidence 589999999999999998 899999996521 1489999999
Q ss_pred ecCC-ceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCE-EEEEeCCcchH
Q 029425 100 VPAG-QVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVR-VFVTAGLATRF 177 (193)
Q Consensus 100 ~~~~-~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~-v~~~~~~~~~~ 177 (193)
++++ .++++|+++++++++.+.....++|+++.. ....++++++|+|+ |.+|++++|+|+++|++ |+++.++++|+
T Consensus 81 v~~~~~~~~lP~~~~~~~aa~l~~~~~ta~~al~~-~~~~~g~~VlV~G~-G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~ 158 (280)
T TIGR03366 81 LPAGTAIVPVPDDLPDAVAAPAGCATATVMAALEA-AGDLKGRRVLVVGA-GMLGLTAAAAAAAAGAARVVAADPSPDRR 158 (280)
T ss_pred ecCCCcEEECCCCCCHHHhhHhhhHHHHHHHHHHh-ccCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHH
Confidence 9997 699999999999999888888999999854 45569999999997 99999999999999996 88888899999
Q ss_pred HHHhhcCCcEEecCC
Q 029425 178 ILCQPFNIRVFIGFG 192 (193)
Q Consensus 178 ~~~~~~G~~~~~~~~ 192 (193)
+.++++|++.++|++
T Consensus 159 ~~a~~~Ga~~~i~~~ 173 (280)
T TIGR03366 159 ELALSFGATALAEPE 173 (280)
T ss_pred HHHHHcCCcEecCch
Confidence 999999999998864
No 124
>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]
Probab=99.91 E-value=2.8e-22 Score=153.45 Aligned_cols=186 Identities=17% Similarity=0.263 Sum_probs=145.6
Q ss_pred EEEEcCC--CCC--CceEEEee--c-CCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCc----ceEEEEEE
Q 029425 3 AIVITQP--GSP--EVLQLQEV--E-DPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGL----ECSGTILS 71 (193)
Q Consensus 3 a~~~~~~--~~~--~~~~~~~~--~-~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~----e~~G~V~~ 71 (193)
.+++... +.| ++|.+++. + ..++++++++||..|.+.+|+.+..++...+..--.|..+|. .++|+|++
T Consensus 6 qvvLk~y~~g~P~~~d~~~~~~~~el~~~~~s~~vlvknlYLS~DPymR~rM~~~~~~~y~~~~~~G~pi~g~GV~kVi~ 85 (343)
T KOG1196|consen 6 QVILKNYVTGFPTESDFEFTTTTVELRVPLGSGEVLVKNLYLSCDPYMRIRMGKPDPSDYAPPYEPGKPIDGFGVAKVID 85 (343)
T ss_pred EEEEeccCCCCCccccceeeeeeecccCCCCCccEEeEeeeecCCHHHHhhccCCCcccccCcccCCcEecCCceEEEEe
Confidence 4555542 222 34444433 3 345799999999999999999987776554432112344443 67899998
Q ss_pred ecCCCCCCCCCCEEEEEccCceeeeEEeecCCce--EECC--CCCCHHh-HccCcchHHHHHHHHHHhcCCCCCCeEEEE
Q 029425 72 VGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQV--LPVP--SGVSLKD-AAAFPEVACTVWSTVFMTSHLSPGESFLVH 146 (193)
Q Consensus 72 vG~~~~~~~~G~~V~~~~~~g~~~~~~~~~~~~~--~~~p--~~~~~~~-aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ 146 (193)
|+.+++++||.|.++. +|.+|.++++... ++++ .+.++.. ..++.++.+|||..+++.+..++|++++|.
T Consensus 86 --S~~~~~~~GD~v~g~~---gWeeysii~~~~~~~~ki~~~~~~pLs~ylg~lGm~glTAy~Gf~ei~~pk~geTv~VS 160 (343)
T KOG1196|consen 86 --SGHPNYKKGDLVWGIV---GWEEYSVITPNDLEHFKIQHPTDVPLSYYLGLLGMPGLTAYAGFYEICSPKKGETVFVS 160 (343)
T ss_pred --cCCCCCCcCceEEEec---cceEEEEecCcchhcccCCCCCccCHhhhhhccCCchhHHHHHHHHhcCCCCCCEEEEe
Confidence 6778999999999996 4999998876543 4443 4444444 456889999999999999999999999999
Q ss_pred cCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhh-cCCcEEecCCC
Q 029425 147 GGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQP-FNIRVFIGFGY 193 (193)
Q Consensus 147 ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~-~G~~~~~~~~~ 193 (193)
||+|.+|+++.|+|+.+||+|+.++.+++|...++. +|+|..|||++
T Consensus 161 aAsGAvGql~GQ~Ak~~Gc~VVGsaGS~EKv~ll~~~~G~d~afNYK~ 208 (343)
T KOG1196|consen 161 AASGAVGQLVGQFAKLMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKE 208 (343)
T ss_pred eccchhHHHHHHHHHhcCCEEEEecCChhhhhhhHhccCCccceeccC
Confidence 999999999999999999999999999999999985 89999999985
No 125
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=99.85 E-value=3.5e-20 Score=145.14 Aligned_cols=129 Identities=29% Similarity=0.374 Sum_probs=116.5
Q ss_pred CCCCCCcceEEEEEEecCCCCCCCCCCEEEEEccCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcC
Q 029425 57 ASPYPGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSH 136 (193)
Q Consensus 57 ~p~~lg~e~~G~V~~vG~~~~~~~~G~~V~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~ 136 (193)
+|.++|+|++|+|+++|+++..|++||+|+.+. .|++|+.++.+.++++|++++..+++.+ .+++++|+++. ..+
T Consensus 20 ~p~v~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~---~~~~~~~v~~~~~~~ip~~l~~~~aa~~-~~~~ta~~~~~-~~~ 94 (277)
T cd08255 20 LPLPPGYSSVGRVVEVGSGVTGFKPGDRVFCFG---PHAERVVVPANLLVPLPDGLPPERAALT-ALAATALNGVR-DAE 94 (277)
T ss_pred CCcccCcceeEEEEEeCCCCCCCCCCCEEEecC---CcceEEEcCHHHeeECcCCCCHHHhHHH-HHHHHHHHHHH-hcC
Confidence 689999999999999999999999999999874 5999999999999999999999888877 78999999984 688
Q ss_pred CCCCCeEEEEcCCchHHHHHHHHHHHCCCE-EEEEeCCcchHHHHhhcC-CcEEecC
Q 029425 137 LSPGESFLVHGGSSGIGTFAIQMGKCQGVR-VFVTAGLATRFILCQPFN-IRVFIGF 191 (193)
Q Consensus 137 ~~~~~~vli~ga~g~~G~~~i~~~~~~g~~-v~~~~~~~~~~~~~~~~G-~~~~~~~ 191 (193)
++++++++|+|+ |.+|++++++++++|++ |+++++++++.+.++++| ++.++++
T Consensus 95 ~~~g~~vlI~g~-g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~~~~~~~ 150 (277)
T cd08255 95 PRLGERVAVVGL-GLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPADPVAAD 150 (277)
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCCcccccc
Confidence 999999999975 99999999999999998 999999999999888888 5555543
No 126
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]
Probab=99.79 E-value=4.4e-19 Score=154.94 Aligned_cols=163 Identities=26% Similarity=0.350 Sum_probs=142.5
Q ss_pred CCCCceEEEeecCC---CCCCCeEEEEEeEecCChhhhhhhcCCCCCCC------CCCCCCCcceEEEEEEecCCCCCCC
Q 029425 10 GSPEVLQLQEVEDP---QIKDDEVLIKVEATALNRADTLQRKGSYPPPK------GASPYPGLECSGTILSVGKNVSRWK 80 (193)
Q Consensus 10 ~~~~~~~~~~~~~~---~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~------~~p~~lg~e~~G~V~~vG~~~~~~~ 80 (193)
|+...++|.+-+.. +..++.-+.-|.|+++|+.|+-+..|+.+... .....+|.||+|+-..
T Consensus 1424 GDlsSlrWies~~~~a~~~~~~~e~CtVYYAplNFRDiMLasGkL~~DAiPG~~a~qdclLGmEFsGRd~~--------- 1494 (2376)
T KOG1202|consen 1424 GDLSSLRWIESPLRHAQPTCPGLELCTVYYAPLNFRDIMLASGKLSPDAIPGDLASQDCLLGMEFSGRDAS--------- 1494 (2376)
T ss_pred ccccceeeeecchhhcCCCCCCCceeEEEeccccHHHHHHhcCCCCcccCCCccchhhheeceeeccccCC---------
Confidence 34455788877754 34666678999999999999999988865311 2245789999988544
Q ss_pred CCCEEEEEccCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHH
Q 029425 81 VGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMG 160 (193)
Q Consensus 81 ~G~~V~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~ 160 (193)
|.||.++.+--++++.+.++.+.+|.+|.+..++||++.|..+.|+|+||..++..++|++||||+++|++|+++|.+|
T Consensus 1495 -GrRvM~mvpAksLATt~l~~rd~lWevP~~WTleeAstVP~VYsTaYYALVvRG~mkkGekiLIHaGsGGVGQAAIaiA 1573 (2376)
T KOG1202|consen 1495 -GRRVMGMVPAKSLATTVLASRDFLWEVPSKWTLEEASTVPVVYSTAYYALVVRGQMKKGEKILIHAGSGGVGQAAIAIA 1573 (2376)
T ss_pred -CcEEEEeeehhhhhhhhhcchhhhhhCCcccchhhcccCceEeeeehhhhhhhccccCCcEEEEecCCCchhHHHHHHH
Confidence 9999999887889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCCEEEEEeCCcchHHHHhh
Q 029425 161 KCQGVRVFVTAGLATRFILCQP 182 (193)
Q Consensus 161 ~~~g~~v~~~~~~~~~~~~~~~ 182 (193)
.+.|++|+-++.|.+|++++.+
T Consensus 1574 La~G~~VFTTVGSaEKRefL~~ 1595 (2376)
T KOG1202|consen 1574 LAHGCTVFTTVGSAEKREFLLK 1595 (2376)
T ss_pred HHcCCEEEEecCcHHHHHHHHH
Confidence 9999999999999999999864
No 127
>PF08240 ADH_N: Alcohol dehydrogenase GroES-like domain; InterPro: IPR013154 This is the catalytic domain of alcohol dehydrogenases (1.1.1.1 from EC). Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure; a name derived from the superfamily of proteins with a GroES fold. Proteins with a GroES fold structure have a highly conserved hydrophobic core and a glycyl-aspartate dipeptide which is thought to maintain the fold [, ].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1YKF_D 2NVB_A 3FSR_D 1BXZ_B 3FTN_A 3MEQ_D 3UOG_B 3HZZ_B 4DVJ_A 1P0F_A ....
Probab=99.76 E-value=2.7e-18 Score=116.66 Aligned_cols=82 Identities=40% Similarity=0.618 Sum_probs=69.6
Q ss_pred CCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCCCCCEEEEEc-----------------
Q 029425 27 DDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKVGDQVCALL----------------- 89 (193)
Q Consensus 27 ~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~~G~~V~~~~----------------- 89 (193)
++||+||+.++++|++|++.+.+......+.|.++|||++|+|+++|+++.+|++||+|+..+
T Consensus 1 P~eVlVkv~a~gic~~D~~~~~g~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~ 80 (109)
T PF08240_consen 1 PGEVLVKVRAAGICGSDLHIREGGPPPPPKFPLILGHEGVGVVVAVGPGVTDFKVGDRVVVSPNIGCGECEYCLSGRPNL 80 (109)
T ss_dssp TTEEEEEEEEEEE-HHHHHHHTTSSSSTSSSSEES-SEEEEEEEEESTTTTSSGTT-EEEEESEEETSSSHHHHTTTGGG
T ss_pred CCEEEEEEEEeeeCHHHHHHHhhccccCCCCCcccccceeeeeeeeccccccccccceeeeecccCccCchhhcCCcccc
Confidence 689999999999999999999985444556799999999999999999999999999998743
Q ss_pred ----------cCceeeeEEeecCCceEEC
Q 029425 90 ----------GGGGYAEKVAVPAGQVLPV 108 (193)
Q Consensus 90 ----------~~g~~~~~~~~~~~~~~~~ 108 (193)
.+|+|++|+.++++.++++
T Consensus 81 c~~~~~~g~~~~G~~aey~~v~~~~~~~v 109 (109)
T PF08240_consen 81 CPNPEVLGLGLDGGFAEYVVVPARNLVPV 109 (109)
T ss_dssp TTTBEETTTSSTCSSBSEEEEEGGGEEEE
T ss_pred CCCCCEeEcCCCCcccCeEEEehHHEEEC
Confidence 2599999999999988864
No 128
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=98.21 E-value=5e-06 Score=70.38 Aligned_cols=54 Identities=19% Similarity=0.147 Sum_probs=49.4
Q ss_pred CCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEE-ecC
Q 029425 137 LSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVF-IGF 191 (193)
Q Consensus 137 ~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~-~~~ 191 (193)
..++++|+|.|+ |.+|+.+++.|+.+|++|++++.++++++.++++|++.+ +|.
T Consensus 162 ~~pg~kVlViGa-G~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~ 216 (509)
T PRK09424 162 KVPPAKVLVIGA-GVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDF 216 (509)
T ss_pred CcCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEecc
Confidence 357999999998 999999999999999999999999999999999999844 554
No 129
>PF11017 DUF2855: Protein of unknown function (DUF2855); InterPro: IPR021276 This family of proteins has no known function.
Probab=98.01 E-value=0.00017 Score=57.38 Aligned_cols=138 Identities=12% Similarity=0.072 Sum_probs=87.0
Q ss_pred cCCCCC-CCCCCCCCCcceEEEEEEecCCCCCCCCCCEEEEEccCceeeeEEeecCCce---------------------
Q 029425 48 KGSYPP-PKGASPYPGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQV--------------------- 105 (193)
Q Consensus 48 ~~~~~~-~~~~p~~lg~e~~G~V~~vG~~~~~~~~G~~V~~~~~~g~~~~~~~~~~~~~--------------------- 105 (193)
...+|. ...+..+|-+.+ ++|++ |.++.+.+|.|+.|+.+ .++|+.+.+..+
T Consensus 20 W~ffP~~~~~wG~vPvWGf-A~Vve--S~~~~i~vGerlyGy~P---~ashl~l~p~~v~~~~f~d~s~hR~~l~~~YN~ 93 (314)
T PF11017_consen 20 WDFFPASDDGWGIVPVWGF-ATVVE--SRHPGIAVGERLYGYFP---MASHLVLEPGKVSPGGFRDVSPHRAGLPPIYNQ 93 (314)
T ss_pred ceeccCCcccCcccccceE-EEEEe--eCCCCccCccEEEeecc---ccceeEEeccccCCCccccChhhhCcCchhhhc
Confidence 344444 344556666666 45555 78999999999999876 344444432221
Q ss_pred E-ECCCC-----CCHHhHccCcchHHHHHHHHHHhc---CCCCCCeEEEEcCCchHHHHHHHHHH-HC-CCEEEEEeCCc
Q 029425 106 L-PVPSG-----VSLKDAAAFPEVACTVWSTVFMTS---HLSPGESFLVHGGSSGIGTFAIQMGK-CQ-GVRVFVTAGLA 174 (193)
Q Consensus 106 ~-~~p~~-----~~~~~aa~~~~~~~~a~~~l~~~~---~~~~~~~vli~ga~g~~G~~~i~~~~-~~-g~~v~~~~~~~ 174 (193)
+ +++.+ -....-+.+-..+.|+|..- +.. +.-..+.|+|..|++-.++.+...++ .. +.+++.++ |.
T Consensus 94 Y~r~~~d~~y~~~~e~~~~LlrPLf~Tsfll~-d~l~~~~~~ga~~vvl~SASSKTA~glA~~L~~~~~~~~~vglT-S~ 171 (314)
T PF11017_consen 94 YLRVSADPAYDPEREDWQMLLRPLFITSFLLD-DFLFDNDFFGAAQVVLSSASSKTAIGLAYCLKKQRGPPKVVGLT-SA 171 (314)
T ss_pred eeecCCCcccCcchhHHHHHHHHHHHHHHHHH-HHhcccccCCccEEEEeccchHHHHHHHHHhhccCCCceEEEEe-cC
Confidence 0 11111 11222345566778888542 222 12345788999999999999888888 34 45888888 55
Q ss_pred chHHHHhhcCC-cEEecCCC
Q 029425 175 TRFILCQPFNI-RVFIGFGY 193 (193)
Q Consensus 175 ~~~~~~~~~G~-~~~~~~~~ 193 (193)
....+.+++|+ |.++.|++
T Consensus 172 ~N~~Fve~lg~Yd~V~~Yd~ 191 (314)
T PF11017_consen 172 RNVAFVESLGCYDEVLTYDD 191 (314)
T ss_pred cchhhhhccCCceEEeehhh
Confidence 66668899999 68888864
No 130
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.73 E-value=0.00016 Score=59.84 Aligned_cols=61 Identities=20% Similarity=0.153 Sum_probs=51.1
Q ss_pred HHHHHHHHhcC-CCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcE
Q 029425 126 TVWSTVFMTSH-LSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRV 187 (193)
Q Consensus 126 ~a~~~l~~~~~-~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~ 187 (193)
+.|.++.+..+ .-+|++++|.|+ |.+|+.+++.++.+|++|+++..++.+...++++|++.
T Consensus 187 s~~~~i~r~t~~~l~GktVvViG~-G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~ 248 (413)
T cd00401 187 SLIDGIKRATDVMIAGKVAVVAGY-GDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEV 248 (413)
T ss_pred hhHHHHHHhcCCCCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEE
Confidence 34555544433 468999999997 99999999999999999999999999999999999843
No 131
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=97.41 E-value=0.00047 Score=58.51 Aligned_cols=49 Identities=20% Similarity=0.108 Sum_probs=45.6
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcE
Q 029425 138 SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRV 187 (193)
Q Consensus 138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~ 187 (193)
.++++++|.|+ |.+|++++++++.+|++|++++++.++++.++++|++.
T Consensus 162 vp~akVlViGa-G~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~ 210 (511)
T TIGR00561 162 VPPAKVLVIGA-GVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEF 210 (511)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeE
Confidence 35789999997 99999999999999999999999999999999999865
No 132
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=97.37 E-value=0.0014 Score=52.09 Aligned_cols=47 Identities=21% Similarity=0.193 Sum_probs=41.8
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCc
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIR 186 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~ 186 (193)
.+.+++|+|. |.+|..+++.++.+|++|+++.++.++.+.++++|+.
T Consensus 151 ~g~kvlViG~-G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~ 197 (296)
T PRK08306 151 HGSNVLVLGF-GRTGMTLARTLKALGANVTVGARKSAHLARITEMGLS 197 (296)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCe
Confidence 5899999997 9999999999999999999999998887777777653
No 133
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=97.26 E-value=0.0019 Score=53.72 Aligned_cols=61 Identities=16% Similarity=0.116 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhcCCC-CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCC
Q 029425 124 ACTVWSTVFMTSHLS-PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNI 185 (193)
Q Consensus 124 ~~~a~~~l~~~~~~~-~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~ 185 (193)
..+.|.++.+..++. .|++++|.|. |.+|..+++.++.+|++|+++..++.+...+...|+
T Consensus 195 ~~s~~~ai~rat~~~l~Gk~VlViG~-G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~ 256 (425)
T PRK05476 195 GESLLDGIKRATNVLIAGKVVVVAGY-GDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGF 256 (425)
T ss_pred HhhhHHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCC
Confidence 345566665443544 8999999997 999999999999999999999988877666555565
No 134
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=96.94 E-value=0.0024 Score=55.37 Aligned_cols=55 Identities=18% Similarity=0.151 Sum_probs=46.0
Q ss_pred CCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC---------------------cchHHHHhhcCCcEEecC
Q 029425 136 HLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGL---------------------ATRFILCQPFNIRVFIGF 191 (193)
Q Consensus 136 ~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~---------------------~~~~~~~~~~G~~~~~~~ 191 (193)
..++|++|+|.|+ |..|+++++.++.+|++|+++.+. +.+++.++++|++..+|.
T Consensus 133 ~~~~g~~V~VIGa-GpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~ 208 (564)
T PRK12771 133 APDTGKRVAVIGG-GPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGV 208 (564)
T ss_pred CCCCCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCC
Confidence 3578999999998 999999999999999999998753 345677888999877764
No 135
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=96.92 E-value=0.0048 Score=51.11 Aligned_cols=60 Identities=18% Similarity=0.148 Sum_probs=47.3
Q ss_pred HHHHHHHHHhcC-CCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCC
Q 029425 125 CTVWSTVFMTSH-LSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNI 185 (193)
Q Consensus 125 ~~a~~~l~~~~~-~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~ 185 (193)
-+++.++.+..+ .-.|++++|.|. |.+|..+++.++.+|++|+++..++.+...++..|+
T Consensus 179 ~s~~~~i~r~t~~~l~Gk~VvViG~-G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~ 239 (406)
T TIGR00936 179 QSTIDGILRATNLLIAGKTVVVAGY-GWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGF 239 (406)
T ss_pred hhHHHHHHHhcCCCCCcCEEEEECC-CHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCC
Confidence 334455544433 368999999997 999999999999999999999888877766666676
No 136
>PRK06949 short chain dehydrogenase; Provisional
Probab=96.69 E-value=0.0052 Score=47.32 Aligned_cols=43 Identities=28% Similarity=0.321 Sum_probs=37.9
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425 138 SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC 180 (193)
Q Consensus 138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~ 180 (193)
-.+++++|+|++|.+|..++..+...|++|+++.+++++.+.+
T Consensus 7 ~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~ 49 (258)
T PRK06949 7 LEGKVALVTGASSGLGARFAQVLAQAGAKVVLASRRVERLKEL 49 (258)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 3478999999999999999999999999999999988876554
No 137
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=96.66 E-value=0.006 Score=42.73 Aligned_cols=43 Identities=16% Similarity=0.183 Sum_probs=38.1
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCE-EEEEeCCcchHHHHhh
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVR-VFVTAGLATRFILCQP 182 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~-v~~~~~~~~~~~~~~~ 182 (193)
.+.+++|.|+ |+.|.+++..+...|++ ++++.|+.+|.+.+.+
T Consensus 11 ~~~~vlviGa-Gg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~ 54 (135)
T PF01488_consen 11 KGKRVLVIGA-GGAARAVAAALAALGAKEITIVNRTPERAEALAE 54 (135)
T ss_dssp TTSEEEEESS-SHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHH
T ss_pred CCCEEEEECC-HHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHH
Confidence 5789999998 99999999999999995 9999999998877653
No 138
>PLN02494 adenosylhomocysteinase
Probab=96.62 E-value=0.011 Score=49.82 Aligned_cols=57 Identities=16% Similarity=0.092 Sum_probs=45.2
Q ss_pred HHHHHHhcCC-CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCC
Q 029425 128 WSTVFMTSHL-SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNI 185 (193)
Q Consensus 128 ~~~l~~~~~~-~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~ 185 (193)
+.++.+..++ -.|++++|.|. |.+|..+++.++.+|++|+++..++.+...+...|+
T Consensus 241 ~d~i~r~t~i~LaGKtVvViGy-G~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~ 298 (477)
T PLN02494 241 PDGLMRATDVMIAGKVAVICGY-GDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGY 298 (477)
T ss_pred HHHHHHhcCCccCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCC
Confidence 4455444333 57999999997 999999999999999999999888777666665665
No 139
>PRK07814 short chain dehydrogenase; Provisional
Probab=96.62 E-value=0.0062 Score=47.27 Aligned_cols=42 Identities=17% Similarity=0.205 Sum_probs=37.1
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC 180 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~ 180 (193)
++.+++|+|++|.+|..+++.+...|++|+++.+++++.+.+
T Consensus 9 ~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~ 50 (263)
T PRK07814 9 DDQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEV 50 (263)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 478999999999999999999999999999999988766544
No 140
>PRK07060 short chain dehydrogenase; Provisional
Probab=96.62 E-value=0.0083 Score=45.76 Aligned_cols=47 Identities=32% Similarity=0.298 Sum_probs=39.6
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhh-cCC
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQP-FNI 185 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~-~G~ 185 (193)
.+.+++|+|++|.+|..+++.+...|++|+++.++.++.+.+.+ .++
T Consensus 8 ~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~ 55 (245)
T PRK07060 8 SGKSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALDRLAGETGC 55 (245)
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCC
Confidence 46799999999999999999999999999999998877765543 444
No 141
>PRK08339 short chain dehydrogenase; Provisional
Probab=96.60 E-value=0.0063 Score=47.34 Aligned_cols=43 Identities=16% Similarity=0.173 Sum_probs=37.4
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHh
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQ 181 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~ 181 (193)
.+++++|+|+++++|.+.++.+...|++|+++.++.++.+.+.
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~ 49 (263)
T PRK08339 7 SGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAR 49 (263)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 4688999999999999999999999999999999887765443
No 142
>PRK05872 short chain dehydrogenase; Provisional
Probab=96.60 E-value=0.0064 Score=48.19 Aligned_cols=46 Identities=15% Similarity=0.251 Sum_probs=39.4
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHh-hcC
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQ-PFN 184 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~-~~G 184 (193)
++++++|+|++|++|..+++.+...|++|+++.+++++++.+. +++
T Consensus 8 ~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~ 54 (296)
T PRK05872 8 AGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAELG 54 (296)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc
Confidence 4789999999999999999999999999999999888776553 344
No 143
>PRK08324 short chain dehydrogenase; Validated
Probab=96.59 E-value=0.0047 Score=54.74 Aligned_cols=79 Identities=15% Similarity=0.099 Sum_probs=54.6
Q ss_pred ceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEe
Q 029425 92 GGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTA 171 (193)
Q Consensus 92 g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~ 171 (193)
.++++|..+++..++.+ +..+.+++.....+ ....-+|++++|+|++|.+|..+++.+...|++|+++.
T Consensus 385 ~~~~~~~~l~~~~~f~i-~~~~~e~a~l~~~~----------~~~~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~ 453 (681)
T PRK08324 385 EAVGRYEPLSEQEAFDI-EYWSLEQAKLQRMP----------KPKPLAGKVALVTGAAGGIGKATAKRLAAEGACVVLAD 453 (681)
T ss_pred hhcCCccCCChhhhcce-eeehhhhhhhhcCC----------CCcCCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEe
Confidence 34567776776666655 44444444311000 11223678999999999999999999999999999999
Q ss_pred CCcchHHHHh
Q 029425 172 GLATRFILCQ 181 (193)
Q Consensus 172 ~~~~~~~~~~ 181 (193)
++.++.+.+.
T Consensus 454 r~~~~~~~~~ 463 (681)
T PRK08324 454 LDEEAAEAAA 463 (681)
T ss_pred CCHHHHHHHH
Confidence 9887765543
No 144
>PRK06057 short chain dehydrogenase; Provisional
Probab=96.59 E-value=0.0068 Score=46.75 Aligned_cols=47 Identities=21% Similarity=0.182 Sum_probs=39.1
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHh-hcCC
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQ-PFNI 185 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~-~~G~ 185 (193)
++++++|+|++|.+|..+++.+...|++|+++.+++++.+.+. +++.
T Consensus 6 ~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~ 53 (255)
T PRK06057 6 AGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAADEVGG 53 (255)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHcCC
Confidence 4689999999999999999999999999999999877665443 3443
No 145
>PRK06139 short chain dehydrogenase; Provisional
Probab=96.52 E-value=0.0069 Score=48.94 Aligned_cols=48 Identities=21% Similarity=0.315 Sum_probs=40.5
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH----hhcCCc
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC----QPFNIR 186 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~----~~~G~~ 186 (193)
.+++++|+|+++++|..+++.+...|++|+++.+++++++.+ ++.|.+
T Consensus 6 ~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~ 57 (330)
T PRK06139 6 HGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAE 57 (330)
T ss_pred CCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCc
Confidence 468999999999999999999999999999999998877543 345654
No 146
>PRK05867 short chain dehydrogenase; Provisional
Probab=96.50 E-value=0.008 Score=46.29 Aligned_cols=42 Identities=24% Similarity=0.243 Sum_probs=37.1
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC 180 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~ 180 (193)
.+++++|+|+++++|..+++.+...|++|+++.++.++.+.+
T Consensus 8 ~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~ 49 (253)
T PRK05867 8 HGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKL 49 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence 478999999999999999999999999999999987766544
No 147
>PRK07062 short chain dehydrogenase; Provisional
Probab=96.49 E-value=0.0082 Score=46.51 Aligned_cols=42 Identities=29% Similarity=0.380 Sum_probs=37.0
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC 180 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~ 180 (193)
.+++++|+|+++.+|...++.+...|++|+++.+++++.+.+
T Consensus 7 ~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~ 48 (265)
T PRK07062 7 EGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASA 48 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Confidence 468999999999999999999999999999999988766543
No 148
>PRK12828 short chain dehydrogenase; Provisional
Probab=96.46 E-value=0.0088 Score=45.29 Aligned_cols=39 Identities=23% Similarity=0.354 Sum_probs=34.5
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchH
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRF 177 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~ 177 (193)
+++++||+|++|.+|..+++.+...|++|+++.++.++.
T Consensus 6 ~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~ 44 (239)
T PRK12828 6 QGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPL 44 (239)
T ss_pred CCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhH
Confidence 368999999999999999999988899999999876653
No 149
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=96.46 E-value=0.0088 Score=46.17 Aligned_cols=43 Identities=30% Similarity=0.385 Sum_probs=37.3
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHh
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQ 181 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~ 181 (193)
++.++||+|++|.+|..+++.+...|++|+++.++.++.+.+.
T Consensus 11 ~~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 53 (259)
T PRK08213 11 SGKTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAA 53 (259)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 4689999999999999999999999999999999887665443
No 150
>PRK05866 short chain dehydrogenase; Provisional
Probab=96.45 E-value=0.0089 Score=47.38 Aligned_cols=42 Identities=29% Similarity=0.324 Sum_probs=36.7
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC 180 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~ 180 (193)
.+.+++|+|++|++|...++.+...|++|+++.++.++.+.+
T Consensus 39 ~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~ 80 (293)
T PRK05866 39 TGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAV 80 (293)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 357899999999999999999988999999999988776544
No 151
>PLN02780 ketoreductase/ oxidoreductase
Probab=96.45 E-value=0.0076 Score=48.48 Aligned_cols=42 Identities=21% Similarity=0.175 Sum_probs=37.5
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC 180 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~ 180 (193)
.|.+++|+||++++|...+..+...|++|+++.+++++++.+
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~ 93 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDV 93 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHH
Confidence 478999999999999998888888899999999998887654
No 152
>PRK07576 short chain dehydrogenase; Provisional
Probab=96.45 E-value=0.0093 Score=46.36 Aligned_cols=41 Identities=27% Similarity=0.276 Sum_probs=36.2
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHH
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFIL 179 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~ 179 (193)
++.+++|+|++|.+|..+++.+...|++|+++.+++++.+.
T Consensus 8 ~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~ 48 (264)
T PRK07576 8 AGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDA 48 (264)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 57899999999999999999999999999999988776543
No 153
>PRK12829 short chain dehydrogenase; Provisional
Probab=96.44 E-value=0.009 Score=46.10 Aligned_cols=44 Identities=30% Similarity=0.312 Sum_probs=38.2
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHh
Q 029425 138 SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQ 181 (193)
Q Consensus 138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~ 181 (193)
-++.++||+|++|.+|..+++.+...|++|+++.++++..+.+.
T Consensus 9 ~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~ 52 (264)
T PRK12829 9 LDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATA 52 (264)
T ss_pred cCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 46789999999999999999999999999999999877665544
No 154
>PRK05854 short chain dehydrogenase; Provisional
Probab=96.43 E-value=0.0093 Score=47.74 Aligned_cols=42 Identities=19% Similarity=0.214 Sum_probs=36.6
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC 180 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~ 180 (193)
.+.+++|+|+++++|..++..+...|++|+++.++.++.+.+
T Consensus 13 ~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~ 54 (313)
T PRK05854 13 SGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAA 54 (313)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 468999999999999999998888999999999988766443
No 155
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=96.42 E-value=0.0096 Score=45.85 Aligned_cols=41 Identities=24% Similarity=0.293 Sum_probs=36.0
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHH
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFIL 179 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~ 179 (193)
.+++++|+|++|.+|..+++.+...|++|+++.+++++.+.
T Consensus 9 ~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~ 49 (255)
T PRK07523 9 TGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAA 49 (255)
T ss_pred CCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 46899999999999999999998899999999988776543
No 156
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=96.42 E-value=0.01 Score=43.21 Aligned_cols=46 Identities=20% Similarity=0.252 Sum_probs=39.8
Q ss_pred CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCc
Q 029425 140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIR 186 (193)
Q Consensus 140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~ 186 (193)
..+++|+|+ |.+|..++.+++.+|+++++.....++.+.++.+++.
T Consensus 20 p~~vvv~G~-G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~ 65 (168)
T PF01262_consen 20 PAKVVVTGA-GRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAY 65 (168)
T ss_dssp T-EEEEEST-SHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTE
T ss_pred CeEEEEECC-CHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCc
Confidence 368899997 9999999999999999999999999988888887774
No 157
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=96.41 E-value=0.0098 Score=51.32 Aligned_cols=48 Identities=17% Similarity=0.081 Sum_probs=41.5
Q ss_pred HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425 133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC 180 (193)
Q Consensus 133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~ 180 (193)
...+.+.|+++||+|++|.+|..+++.+...|++|++++++.++.+.+
T Consensus 73 ~~~~~~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l 120 (576)
T PLN03209 73 KELDTKDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESL 120 (576)
T ss_pred cccccCCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Confidence 344567889999999999999999999999999999999998877544
No 158
>PRK07035 short chain dehydrogenase; Provisional
Probab=96.41 E-value=0.01 Score=45.62 Aligned_cols=41 Identities=29% Similarity=0.338 Sum_probs=35.9
Q ss_pred CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425 140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC 180 (193)
Q Consensus 140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~ 180 (193)
+.+++|+|++|.+|..+++.+...|++|+++.++.++.+.+
T Consensus 8 ~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~ 48 (252)
T PRK07035 8 GKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAV 48 (252)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 57899999999999999999999999999999887765443
No 159
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=96.40 E-value=0.01 Score=45.68 Aligned_cols=40 Identities=23% Similarity=0.163 Sum_probs=35.6
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHH
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFI 178 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~ 178 (193)
++.++||+|++|.+|..+++.+...|++|+++.+++++.+
T Consensus 6 ~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~ 45 (262)
T PRK13394 6 NGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGAN 45 (262)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHH
Confidence 4689999999999999999999999999999999886554
No 160
>PRK06196 oxidoreductase; Provisional
Probab=96.34 E-value=0.011 Score=47.26 Aligned_cols=42 Identities=26% Similarity=0.293 Sum_probs=36.7
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC 180 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~ 180 (193)
.+.+++|+|++|.+|..++..+...|++|+++.++.++.+.+
T Consensus 25 ~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~ 66 (315)
T PRK06196 25 SGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAREA 66 (315)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 467999999999999999998888999999999988766544
No 161
>PRK07063 short chain dehydrogenase; Provisional
Probab=96.33 E-value=0.012 Score=45.48 Aligned_cols=42 Identities=24% Similarity=0.192 Sum_probs=36.7
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC 180 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~ 180 (193)
.+++++|+|+++++|..+++.+...|++|+++.+++++.+.+
T Consensus 6 ~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~ 47 (260)
T PRK07063 6 AGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERA 47 (260)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 467899999999999999999999999999999987766544
No 162
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=96.32 E-value=0.026 Score=44.73 Aligned_cols=57 Identities=19% Similarity=0.283 Sum_probs=48.5
Q ss_pred HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEec
Q 029425 133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFIG 190 (193)
Q Consensus 133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~~ 190 (193)
..+.++||+ .+|-+.+|++|..+..+++.+|++++++.. |.+|.+.++.+|+..++.
T Consensus 55 ~~G~l~pG~-tIVE~TSGNTGI~LA~vaa~~Gy~~iivmP~~~S~er~~~l~a~GAevi~t 114 (300)
T COG0031 55 KRGLLKPGG-TIVEATSGNTGIALAMVAAAKGYRLIIVMPETMSQERRKLLRALGAEVILT 114 (300)
T ss_pred HcCCCCCCC-EEEEcCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEc
Confidence 567799998 556788899999999999999999888876 778999999999965553
No 163
>PRK06172 short chain dehydrogenase; Provisional
Probab=96.31 E-value=0.012 Score=45.20 Aligned_cols=40 Identities=30% Similarity=0.328 Sum_probs=35.4
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHH
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFI 178 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~ 178 (193)
.+.+++|+|++|.+|..+++.+...|++|+++.+++++.+
T Consensus 6 ~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~ 45 (253)
T PRK06172 6 SGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGE 45 (253)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 4689999999999999999988889999999999877654
No 164
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=96.29 E-value=0.027 Score=44.67 Aligned_cols=46 Identities=22% Similarity=0.256 Sum_probs=39.0
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCC
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNI 185 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~ 185 (193)
.+++++|.|. |.+|..++..++.+|++|++..++.++...+.++|+
T Consensus 150 ~gk~v~IiG~-G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~ 195 (287)
T TIGR02853 150 HGSNVMVLGF-GRTGMTIARTFSALGARVFVGARSSADLARITEMGL 195 (287)
T ss_pred CCCEEEEEcC-hHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCC
Confidence 4789999997 999999999999999999999998887655544443
No 165
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=96.27 E-value=0.013 Score=44.99 Aligned_cols=43 Identities=23% Similarity=0.261 Sum_probs=37.0
Q ss_pred CCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHH
Q 029425 137 LSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFIL 179 (193)
Q Consensus 137 ~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~ 179 (193)
.-++.+++|+|++|.+|..+++.+...|++|+++.++.++.+.
T Consensus 9 ~~~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~ 51 (247)
T PRK08945 9 LLKDRIILVTGAGDGIGREAALTYARHGATVILLGRTEEKLEA 51 (247)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCCHHHHHH
Confidence 4478899999999999999999888899999999988765433
No 166
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=96.26 E-value=0.03 Score=44.83 Aligned_cols=57 Identities=19% Similarity=0.307 Sum_probs=50.5
Q ss_pred HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425 133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI 189 (193)
Q Consensus 133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~ 189 (193)
..+.+.||.++||-.-+|++|..+.-++...|+++|++.. +.+|...++++|+..+.
T Consensus 96 ~~G~i~pg~stliEpTSGNtGigLA~~~a~~Gyk~i~tmP~~ms~Ek~~~l~a~Gaeii~ 155 (362)
T KOG1252|consen 96 KKGLITPGKSTLIEPTSGNTGIGLAYMAALRGYKCIITMPEKMSKEKRILLRALGAEIIL 155 (362)
T ss_pred HcCCccCCceEEEecCCCchHHHHHHHHHHcCceEEEEechhhhHHHHHHHHHcCCEEEe
Confidence 4577899999999999999999999999999999998876 67788999999996554
No 167
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=96.26 E-value=0.02 Score=45.90 Aligned_cols=80 Identities=16% Similarity=0.199 Sum_probs=57.1
Q ss_pred eEECCCCCCHHhHccCcchHHHHHHHHHHhcCC---CCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchH-HH
Q 029425 105 VLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHL---SPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRF-IL 179 (193)
Q Consensus 105 ~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~---~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~-~~ 179 (193)
.++.|+.+..+.++.. .+...++.++...... -++.+++|.|+ |.+|..+++.++..|+ +|+++.++.++. ++
T Consensus 141 a~~~~k~vr~et~i~~-~~~sv~~~Av~~a~~~~~~l~~~~V~ViGa-G~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~l 218 (311)
T cd05213 141 AIKVGKRVRTETGISR-GAVSISSAAVELAEKIFGNLKGKKVLVIGA-GEMGELAAKHLAAKGVAEITIANRTYERAEEL 218 (311)
T ss_pred HHHHHHHHhhhcCCCC-CCcCHHHHHHHHHHHHhCCccCCEEEEECc-HHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHH
Confidence 4566777776666544 3455565565322221 36899999997 9999999999998775 788999988875 55
Q ss_pred HhhcCCc
Q 029425 180 CQPFNIR 186 (193)
Q Consensus 180 ~~~~G~~ 186 (193)
++++|+.
T Consensus 219 a~~~g~~ 225 (311)
T cd05213 219 AKELGGN 225 (311)
T ss_pred HHHcCCe
Confidence 6678873
No 168
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.26 E-value=0.0093 Score=46.95 Aligned_cols=42 Identities=29% Similarity=0.357 Sum_probs=37.0
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC 180 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~ 180 (193)
.++.++|+||++++|..++.-.-..|++++.+++..++++.+
T Consensus 11 ~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v 52 (282)
T KOG1205|consen 11 AGKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERV 52 (282)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHH
Confidence 478999999999999998888888899999999988877666
No 169
>PRK07831 short chain dehydrogenase; Provisional
Probab=96.25 E-value=0.015 Score=45.08 Aligned_cols=44 Identities=25% Similarity=0.329 Sum_probs=36.9
Q ss_pred CCCCCeEEEEcCCc-hHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425 137 LSPGESFLVHGGSS-GIGTFAIQMGKCQGVRVFVTAGLATRFILC 180 (193)
Q Consensus 137 ~~~~~~vli~ga~g-~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~ 180 (193)
+..+++++|+|++| ++|..+++.+...|++|+++.+++++.+..
T Consensus 14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~ 58 (262)
T PRK07831 14 LLAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGET 58 (262)
T ss_pred ccCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 34578999999986 899999999999999999998887766544
No 170
>PRK07109 short chain dehydrogenase; Provisional
Probab=96.24 E-value=0.013 Score=47.31 Aligned_cols=42 Identities=17% Similarity=0.218 Sum_probs=36.8
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC 180 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~ 180 (193)
.+.+++|+|++|.+|..+++.+...|++|+++.+++++.+.+
T Consensus 7 ~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~ 48 (334)
T PRK07109 7 GRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEAL 48 (334)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 467899999999999999999999999999999988776543
No 171
>PRK06841 short chain dehydrogenase; Provisional
Probab=96.24 E-value=0.014 Score=44.82 Aligned_cols=44 Identities=25% Similarity=0.340 Sum_probs=36.8
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhh
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQP 182 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~ 182 (193)
++.+++|+|++|.+|..+++.+...|++|+++.++.+..+...+
T Consensus 14 ~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~ 57 (255)
T PRK06841 14 SGKVAVVTGGASGIGHAIAELFAAKGARVALLDRSEDVAEVAAQ 57 (255)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 46799999999999999999998899999999988765444433
No 172
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=96.23 E-value=0.051 Score=40.32 Aligned_cols=42 Identities=24% Similarity=0.296 Sum_probs=36.2
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC 180 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~ 180 (193)
.+.+++|.|++|.+|..++..+...|++|+++.++.++.+.+
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l 68 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKA 68 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence 567999999999999998888888899999999988776554
No 173
>PRK06125 short chain dehydrogenase; Provisional
Probab=96.22 E-value=0.015 Score=45.00 Aligned_cols=42 Identities=26% Similarity=0.362 Sum_probs=36.8
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC 180 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~ 180 (193)
.+++++|+|+++.+|...++.+...|++|+++.+++++.+.+
T Consensus 6 ~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~ 47 (259)
T PRK06125 6 AGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALEAL 47 (259)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 368999999999999999999989999999999988766553
No 174
>PRK08628 short chain dehydrogenase; Provisional
Probab=96.22 E-value=0.012 Score=45.41 Aligned_cols=41 Identities=22% Similarity=0.194 Sum_probs=35.7
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHH
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFIL 179 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~ 179 (193)
++.+++|+|++|.+|..+++.+...|++|+++.+++++.+.
T Consensus 6 ~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~ 46 (258)
T PRK08628 6 KDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDDEF 46 (258)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhHHH
Confidence 46799999999999999999999999999999988776533
No 175
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=96.20 E-value=0.021 Score=46.98 Aligned_cols=45 Identities=22% Similarity=0.213 Sum_probs=37.6
Q ss_pred CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhh-cCC
Q 029425 140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQP-FNI 185 (193)
Q Consensus 140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~-~G~ 185 (193)
+.+++|.|+ |.+|+.+++.++.+|++|++++++.++.+.+.+ +|.
T Consensus 167 ~~~VlViGa-G~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~ 212 (370)
T TIGR00518 167 PGDVTIIGG-GVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGG 212 (370)
T ss_pred CceEEEEcC-CHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCc
Confidence 456889997 999999999999999999999998887766643 443
No 176
>PRK12939 short chain dehydrogenase; Provisional
Probab=96.18 E-value=0.016 Score=44.24 Aligned_cols=42 Identities=26% Similarity=0.301 Sum_probs=36.3
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC 180 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~ 180 (193)
++.+++|+|++|.+|..++..+...|++|+++.+++++.+.+
T Consensus 6 ~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~ 47 (250)
T PRK12939 6 AGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEAREL 47 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 468899999999999999999999999999998887765443
No 177
>PRK06197 short chain dehydrogenase; Provisional
Probab=96.16 E-value=0.014 Score=46.35 Aligned_cols=40 Identities=18% Similarity=0.238 Sum_probs=35.4
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHH
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFI 178 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~ 178 (193)
.+.+++|+|++|++|..+++.+...|++|+++.++.++.+
T Consensus 15 ~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~ 54 (306)
T PRK06197 15 SGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGK 54 (306)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 5689999999999999999988888999999998877654
No 178
>PRK07904 short chain dehydrogenase; Provisional
Probab=96.16 E-value=0.019 Score=44.37 Aligned_cols=40 Identities=23% Similarity=0.205 Sum_probs=34.4
Q ss_pred CCCCCeEEEEcCCchHHHHHHHHHHHC-CCEEEEEeCCcch
Q 029425 137 LSPGESFLVHGGSSGIGTFAIQMGKCQ-GVRVFVTAGLATR 176 (193)
Q Consensus 137 ~~~~~~vli~ga~g~~G~~~i~~~~~~-g~~v~~~~~~~~~ 176 (193)
+.++.+++|+|++|++|...++.+... |++|+++.+++++
T Consensus 5 ~~~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~ 45 (253)
T PRK07904 5 VGNPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDP 45 (253)
T ss_pred cCCCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcch
Confidence 456789999999999999999877776 4899999998775
No 179
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=96.15 E-value=0.017 Score=44.47 Aligned_cols=41 Identities=24% Similarity=0.297 Sum_probs=36.1
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHH
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFIL 179 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~ 179 (193)
.+.+++|+|+++.+|..++..+...|++|+++.+++++.+.
T Consensus 10 ~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~ 50 (256)
T PRK06124 10 AGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEA 50 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHH
Confidence 47899999999999999999888899999999998776544
No 180
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=96.13 E-value=0.017 Score=44.48 Aligned_cols=41 Identities=24% Similarity=0.341 Sum_probs=36.0
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHH
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFIL 179 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~ 179 (193)
.++++||+|+++.+|..++..+...|++|+++.+++++.+.
T Consensus 8 ~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~ 48 (254)
T PRK08085 8 AGKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAEL 48 (254)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHH
Confidence 46789999999999999999999999999999988776544
No 181
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=96.13 E-value=0.024 Score=47.49 Aligned_cols=117 Identities=15% Similarity=0.171 Sum_probs=74.6
Q ss_pred CCCCcceEEEEEEecCCCCCCCCCCEEE-EEc----------------cCceeeeEEeecCCceEECCCCCCHHhHccCc
Q 029425 59 PYPGLECSGTILSVGKNVSRWKVGDQVC-ALL----------------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFP 121 (193)
Q Consensus 59 ~~lg~e~~G~V~~vG~~~~~~~~G~~V~-~~~----------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~ 121 (193)
..-|+|+++.+.+|+++....-+|+.-+ +-+ -++.|+..+ +.|+.+..+ .....
T Consensus 90 ~~~g~ea~~hl~~V~~GldS~V~GE~qIlgQvk~a~~~a~~~g~~g~~l~~lf~~a~--------~~~k~v~~~-t~i~~ 160 (423)
T PRK00045 90 VHEGEEAVRHLFRVASGLDSMVLGEPQILGQVKDAYALAQEAGTVGTILNRLFQKAF--------SVAKRVRTE-TGIGA 160 (423)
T ss_pred hcCCHHHHHHHHHHHhhhhhhhcCChHHHHHHHHHHHHHHHcCCchHHHHHHHHHHH--------HHHhhHhhh-cCCCC
Confidence 3579999999999999887666666532 111 012333222 333333222 22222
Q ss_pred chHHHHHHHHHHhcC---CCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHH-HHhhcCC
Q 029425 122 EVACTVWSTVFMTSH---LSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFI-LCQPFNI 185 (193)
Q Consensus 122 ~~~~~a~~~l~~~~~---~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~-~~~~~G~ 185 (193)
.+...++.++..... -.++++++|.|+ |.+|.++++.++..|+ +|+++.++.++.. +++++|+
T Consensus 161 ~~~Sv~~~Av~~a~~~~~~~~~~~vlViGa-G~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~ 228 (423)
T PRK00045 161 GAVSVASAAVELAKQIFGDLSGKKVLVIGA-GEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGG 228 (423)
T ss_pred CCcCHHHHHHHHHHHhhCCccCCEEEEECc-hHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCC
Confidence 344555555532221 256789999997 9999999999999998 8999999988865 5556775
No 182
>PRK05875 short chain dehydrogenase; Provisional
Probab=96.08 E-value=0.018 Score=44.84 Aligned_cols=41 Identities=24% Similarity=0.370 Sum_probs=35.8
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHH
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFIL 179 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~ 179 (193)
++.+++|+|++|.+|..+++.+.+.|++|+++.++.++.+.
T Consensus 6 ~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~~~~~~ 46 (276)
T PRK05875 6 QDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAA 46 (276)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHH
Confidence 36799999999999999999999999999999988766543
No 183
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=96.06 E-value=0.059 Score=45.56 Aligned_cols=59 Identities=19% Similarity=0.182 Sum_probs=43.0
Q ss_pred HHHHHHHHhcC-CCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCC
Q 029425 126 TVWSTVFMTSH-LSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNI 185 (193)
Q Consensus 126 ~a~~~l~~~~~-~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~ 185 (193)
+.+.++.+..+ .-.|++++|.|. |.+|..+++.++.+|++|+++.+++.+...+...|+
T Consensus 239 s~~d~~~R~~~~~LaGKtVgVIG~-G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~ 298 (476)
T PTZ00075 239 SLIDGIFRATDVMIAGKTVVVCGY-GDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGY 298 (476)
T ss_pred HHHHHHHHhcCCCcCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCc
Confidence 33344434333 347899999997 999999999999999999999877666544444454
No 184
>PRK09242 tropinone reductase; Provisional
Probab=96.04 E-value=0.02 Score=44.11 Aligned_cols=42 Identities=26% Similarity=0.302 Sum_probs=36.8
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC 180 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~ 180 (193)
.+++++|+|+++.+|..++..+...|++|+++.++.++.+.+
T Consensus 8 ~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~ 49 (257)
T PRK09242 8 DGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQA 49 (257)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 478999999999999999999999999999999988766544
No 185
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=96.01 E-value=0.022 Score=43.91 Aligned_cols=35 Identities=23% Similarity=0.325 Sum_probs=32.4
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGL 173 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~ 173 (193)
.+.++||+|+++.+|...++.+...|++|+++.++
T Consensus 14 ~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~ 48 (258)
T PRK06935 14 DGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHG 48 (258)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 46899999999999999999999999999999887
No 186
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.01 E-value=0.024 Score=48.39 Aligned_cols=50 Identities=20% Similarity=0.166 Sum_probs=42.6
Q ss_pred CCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcE
Q 029425 137 LSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRV 187 (193)
Q Consensus 137 ~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~ 187 (193)
+.++++++|.|. |..|++++++++..|++|++++..+++.+.++++|+..
T Consensus 9 ~~~~~~v~V~G~-G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~ 58 (488)
T PRK03369 9 LLPGAPVLVAGA-GVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVAT 58 (488)
T ss_pred ccCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEE
Confidence 457889999997 99999999999999999999997766666677778743
No 187
>PLN02565 cysteine synthase
Probab=96.00 E-value=0.06 Score=43.41 Aligned_cols=57 Identities=23% Similarity=0.338 Sum_probs=47.5
Q ss_pred HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425 133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI 189 (193)
Q Consensus 133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~ 189 (193)
..+.+.+|.+.+|..++|+.|+++...++.+|++++++.. ++.|.+.++.+|+..++
T Consensus 59 ~~g~~~~g~~~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~ 118 (322)
T PLN02565 59 EKGLIKPGESVLIEPTSGNTGIGLAFMAAAKGYKLIITMPASMSLERRIILLAFGAELVL 118 (322)
T ss_pred HcCCCCCCCcEEEEECCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEE
Confidence 4455678877788888899999999999999999888776 56788999999996554
No 188
>PRK04148 hypothetical protein; Provisional
Probab=95.98 E-value=0.038 Score=38.60 Aligned_cols=50 Identities=12% Similarity=0.053 Sum_probs=41.4
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEe
Q 029425 138 SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFI 189 (193)
Q Consensus 138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~ 189 (193)
.++.++++.|. | .|...+..+..+|.+|++++.+++..+.+++.+...+.
T Consensus 15 ~~~~kileIG~-G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~ 64 (134)
T PRK04148 15 GKNKKIVELGI-G-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFV 64 (134)
T ss_pred ccCCEEEEEEe-c-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEE
Confidence 45678999996 7 88766767778899999999999999999888875544
No 189
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.97 E-value=0.024 Score=43.15 Aligned_cols=41 Identities=24% Similarity=0.276 Sum_probs=35.4
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHH
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFIL 179 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~ 179 (193)
.+.+++|+|++|.+|..++..+...|++|+++.+++++.+.
T Consensus 6 ~~~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~ 46 (239)
T PRK07666 6 QGKNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKA 46 (239)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 35789999999999999999988999999999998766543
No 190
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=95.97 E-value=0.026 Score=41.43 Aligned_cols=45 Identities=20% Similarity=0.124 Sum_probs=37.3
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcC
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFN 184 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G 184 (193)
.|.++.|+|. |.+|..+++.++.+|++|+...++........+.+
T Consensus 35 ~g~tvgIiG~-G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~ 79 (178)
T PF02826_consen 35 RGKTVGIIGY-GRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFG 79 (178)
T ss_dssp TTSEEEEEST-SHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTT
T ss_pred CCCEEEEEEE-cCCcCeEeeeeecCCceeEEecccCChhhhccccc
Confidence 5889999996 99999999999999999999999887655344444
No 191
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=95.96 E-value=0.023 Score=44.37 Aligned_cols=41 Identities=15% Similarity=0.166 Sum_probs=35.8
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHH
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFIL 179 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~ 179 (193)
.+.+++|+|++|.+|...+..+...|++|+++.+++++.+.
T Consensus 9 ~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~ 49 (278)
T PRK08277 9 KGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEA 49 (278)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 46889999999999999999999999999999988765543
No 192
>PRK05717 oxidoreductase; Validated
Probab=95.93 E-value=0.023 Score=43.72 Aligned_cols=41 Identities=24% Similarity=0.157 Sum_probs=35.1
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHH
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFIL 179 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~ 179 (193)
.+.+++|+|++|.+|..++..+...|++|+++.++.++.+.
T Consensus 9 ~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~~ 49 (255)
T PRK05717 9 NGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDRERGSK 49 (255)
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCHHHHHH
Confidence 46789999999999999999998899999999877665444
No 193
>PLN03013 cysteine synthase
Probab=95.83 E-value=0.065 Score=44.83 Aligned_cols=57 Identities=25% Similarity=0.368 Sum_probs=48.2
Q ss_pred HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425 133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI 189 (193)
Q Consensus 133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~ 189 (193)
+.+.+++|.+.+|...+|+.|.++..+++.+|+++++++. +++|.+.++.+|+..++
T Consensus 167 ~~G~l~pG~~~VVeaSSGN~G~ALA~~a~~~G~~~~VvvP~~~s~~K~~~ira~GAeVi~ 226 (429)
T PLN03013 167 QKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVL 226 (429)
T ss_pred HcCCcCCCCcEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHcCCEEEE
Confidence 4566788877778888899999999999999999888865 66788999999997654
No 194
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=95.83 E-value=0.028 Score=44.20 Aligned_cols=43 Identities=33% Similarity=0.409 Sum_probs=38.3
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHh
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQ 181 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~ 181 (193)
.+.+++|+|++.++|.+.+..+...|++|+++.+++++.+...
T Consensus 7 ~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~ 49 (270)
T KOG0725|consen 7 AGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETA 49 (270)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 5788999999999999999999999999999999998865543
No 195
>PLN02253 xanthoxin dehydrogenase
Probab=95.83 E-value=0.028 Score=43.90 Aligned_cols=41 Identities=24% Similarity=0.294 Sum_probs=35.0
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHH
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFIL 179 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~ 179 (193)
.+++++|+|++|.+|..+++.+...|++|+++.+++++.+.
T Consensus 17 ~~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~~~~~~~ 57 (280)
T PLN02253 17 LGKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQDDLGQN 57 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 36789999999999999999888899999999887665443
No 196
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.81 E-value=0.012 Score=49.49 Aligned_cols=59 Identities=12% Similarity=0.120 Sum_probs=46.6
Q ss_pred HhcCCCCCCeEE----EEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCc-EEecC
Q 029425 133 MTSHLSPGESFL----VHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIR-VFIGF 191 (193)
Q Consensus 133 ~~~~~~~~~~vl----i~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~-~~~~~ 191 (193)
.+.++++|+.++ ++|++|.+|.+++|+++..|++|+.+.+.+.+....+..+.+ .++|.
T Consensus 27 ~l~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~d~ 90 (450)
T PRK08261 27 PLRRYRPGQPLLDGPVLVGGAGRLAEALAALLAGLGYDVVANNDGGLTWAAGWGDRFGALVFDA 90 (450)
T ss_pred cccCCCCCCCCCCCceEEccCchhHHHHHHHHhhCCCeeeecCccccccccCcCCcccEEEEEC
Confidence 345678888888 888889999999999999999999988776655555556665 45554
No 197
>PLN02778 3,5-epimerase/4-reductase
Probab=95.81 E-value=0.043 Score=43.62 Aligned_cols=53 Identities=15% Similarity=0.129 Sum_probs=39.7
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHH----HHhhcCCcEEecC
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFI----LCQPFNIRVFIGF 191 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~----~~~~~G~~~~~~~ 191 (193)
...++||+|++|.+|..+++.+...|.+|+......+..+ .++..+.|.+|+.
T Consensus 8 ~~~kiLVtG~tGfiG~~l~~~L~~~g~~V~~~~~~~~~~~~v~~~l~~~~~D~ViH~ 64 (298)
T PLN02778 8 ATLKFLIYGKTGWIGGLLGKLCQEQGIDFHYGSGRLENRASLEADIDAVKPTHVFNA 64 (298)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHhCCCEEEEecCccCCHHHHHHHHHhcCCCEEEEC
Confidence 4468999999999999999999999999876543333222 3345688888864
No 198
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=95.80 E-value=0.094 Score=39.30 Aligned_cols=46 Identities=15% Similarity=0.148 Sum_probs=39.7
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhh-cCC
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQP-FNI 185 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~-~G~ 185 (193)
.|.+++|+|. |.+|..+++.+...|++|+++++++++.+.+.+ +|+
T Consensus 27 ~gk~v~I~G~-G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~ 73 (200)
T cd01075 27 EGKTVAVQGL-GKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGA 73 (200)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCC
Confidence 5689999997 999999999999999999999988887776654 465
No 199
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=95.80 E-value=0.027 Score=43.44 Aligned_cols=37 Identities=24% Similarity=0.385 Sum_probs=32.9
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT 175 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~ 175 (193)
.+++++|+|++|.+|..+++.+...|++|+++.+++.
T Consensus 7 ~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~ 43 (260)
T PRK12823 7 AGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSEL 43 (260)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchH
Confidence 3678999999999999999999999999999988754
No 200
>PRK12367 short chain dehydrogenase; Provisional
Probab=95.78 E-value=0.042 Score=42.43 Aligned_cols=36 Identities=17% Similarity=0.266 Sum_probs=32.5
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA 174 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~ 174 (193)
.+++++|+|++|++|...++.+...|++|+++.+++
T Consensus 13 ~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~ 48 (245)
T PRK12367 13 QGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSK 48 (245)
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCc
Confidence 367999999999999999999999999999998875
No 201
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=95.76 E-value=0.032 Score=42.98 Aligned_cols=42 Identities=21% Similarity=0.192 Sum_probs=36.3
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC 180 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~ 180 (193)
.+.+++|+|+++.+|..++..+...|++++++.+++++.+.+
T Consensus 10 ~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~ 51 (255)
T PRK06113 10 DGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHV 51 (255)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Confidence 478999999999999999999999999999999887765443
No 202
>PRK06114 short chain dehydrogenase; Provisional
Probab=95.65 E-value=0.06 Score=41.45 Aligned_cols=37 Identities=24% Similarity=0.178 Sum_probs=33.1
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT 175 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~ 175 (193)
.+.+++|+|+++.+|..+++.+...|++|+++.++++
T Consensus 7 ~~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~ 43 (254)
T PRK06114 7 DGQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTD 43 (254)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcc
Confidence 4679999999999999999999999999999988654
No 203
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=95.61 E-value=0.092 Score=43.18 Aligned_cols=57 Identities=18% Similarity=0.328 Sum_probs=48.1
Q ss_pred HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425 133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI 189 (193)
Q Consensus 133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~ 189 (193)
..+.++||.+.+|...+|+.|.++..+++.+|++.+++.. +.+|...++.+|++.++
T Consensus 103 ~~G~i~pG~~~vV~aSsGN~G~alA~~a~~~G~~~~ivvp~~~~~~k~~~lr~~GA~Vi~ 162 (368)
T PLN02556 103 KKNLITPGKTTLIEPTSGNMGISLAFMAAMKGYKMILTMPSYTSLERRVTMRAFGAELVL 162 (368)
T ss_pred HcCCcCCCCCEEEEeCCchHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEE
Confidence 4566788887888888999999999999999999888865 35788999999997654
No 204
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=95.59 E-value=0.039 Score=42.77 Aligned_cols=42 Identities=19% Similarity=0.113 Sum_probs=36.0
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC 180 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~ 180 (193)
.+.+++|+|+++.+|..++..+...|++|+++.+++++.+.+
T Consensus 9 ~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~ 50 (265)
T PRK07097 9 KGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKG 50 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Confidence 467899999999999999988888999999999887765443
No 205
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=95.57 E-value=0.08 Score=41.04 Aligned_cols=92 Identities=16% Similarity=0.262 Sum_probs=59.2
Q ss_pred CCCCCEEEEEccCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhc-CCCCCCeEEEEcCCchHHHHHH
Q 029425 79 WKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTS-HLSPGESFLVHGGSSGIGTFAI 157 (193)
Q Consensus 79 ~~~G~~V~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~-~~~~~~~vli~ga~g~~G~~~i 157 (193)
+++|++++..+. |.++.. +....+.+++++.+..+. . ..|.. ++.... ...++++++-.|+ |. |..++
T Consensus 67 ~~~g~~~~i~p~---~~~~~~-~~~~~i~i~p~~afgtg~-h---~tt~~-~l~~l~~~~~~~~~VLDiGc-Gs-G~l~i 135 (250)
T PRK00517 67 IRIGDRLWIVPS---WEDPPD-PDEINIELDPGMAFGTGT-H---PTTRL-CLEALEKLVLPGKTVLDVGC-GS-GILAI 135 (250)
T ss_pred EEEcCCEEEECC---CcCCCC-CCeEEEEECCCCccCCCC-C---HHHHH-HHHHHHhhcCCCCEEEEeCC-cH-HHHHH
Confidence 678988776654 555543 556677887776655432 1 12222 222222 2568899999996 65 88777
Q ss_pred HHHHHCCC-EEEEEeCCcchHHHHhh
Q 029425 158 QMGKCQGV-RVFVTAGLATRFILCQP 182 (193)
Q Consensus 158 ~~~~~~g~-~v~~~~~~~~~~~~~~~ 182 (193)
.+++ .|+ +|+.++.++...+.+++
T Consensus 136 ~~~~-~g~~~v~giDis~~~l~~A~~ 160 (250)
T PRK00517 136 AAAK-LGAKKVLAVDIDPQAVEAARE 160 (250)
T ss_pred HHHH-cCCCeEEEEECCHHHHHHHHH
Confidence 6554 566 59999999888877654
No 206
>PRK07775 short chain dehydrogenase; Provisional
Probab=95.56 E-value=0.042 Score=42.92 Aligned_cols=40 Identities=28% Similarity=0.233 Sum_probs=34.5
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHH
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFI 178 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~ 178 (193)
...+++|+|++|.+|..+++.+...|++|+++.++.++.+
T Consensus 9 ~~~~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~~~~~ 48 (274)
T PRK07775 9 DRRPALVAGASSGIGAATAIELAAAGFPVALGARRVEKCE 48 (274)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 3468999999999999999999889999999988776554
No 207
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=95.53 E-value=0.038 Score=42.58 Aligned_cols=40 Identities=13% Similarity=0.111 Sum_probs=34.7
Q ss_pred CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHH
Q 029425 140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFIL 179 (193)
Q Consensus 140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~ 179 (193)
+.+++|+|++|.+|..+++.+...|++|+++.++.++...
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~ 56 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKT 56 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHH
Confidence 5789999999999999999888889999999888766543
No 208
>PRK06523 short chain dehydrogenase; Provisional
Probab=95.52 E-value=0.031 Score=43.07 Aligned_cols=36 Identities=36% Similarity=0.475 Sum_probs=32.4
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA 174 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~ 174 (193)
++++++|+|++|.+|...++.+...|++|+++.++.
T Consensus 8 ~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~ 43 (260)
T PRK06523 8 AGKRALVTGGTKGIGAATVARLLEAGARVVTTARSR 43 (260)
T ss_pred CCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCCh
Confidence 478999999999999999999988999999998764
No 209
>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.52 E-value=0.039 Score=44.29 Aligned_cols=43 Identities=26% Similarity=0.265 Sum_probs=37.9
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHh
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQ 181 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~ 181 (193)
.+.+++|+|+++++|...+..+...|++|++.+|+.++.+.+.
T Consensus 34 ~~~~~vVTGansGIG~eta~~La~~Ga~Vv~~~R~~~~~~~~~ 76 (314)
T KOG1208|consen 34 SGKVALVTGATSGIGFETARELALRGAHVVLACRNEERGEEAK 76 (314)
T ss_pred CCcEEEEECCCCchHHHHHHHHHhCCCEEEEEeCCHHHHHHHH
Confidence 4679999999999999999999999999999999987665553
No 210
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=95.51 E-value=0.06 Score=41.47 Aligned_cols=36 Identities=14% Similarity=0.137 Sum_probs=32.1
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA 174 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~ 174 (193)
++++++|+|+++++|.++++.+...|++|+++.+++
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~ 42 (251)
T PRK12481 7 NGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAE 42 (251)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCch
Confidence 468999999999999999999999999999887654
No 211
>PLN02686 cinnamoyl-CoA reductase
Probab=95.47 E-value=0.04 Score=45.14 Aligned_cols=44 Identities=16% Similarity=0.074 Sum_probs=36.8
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHh
Q 029425 138 SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQ 181 (193)
Q Consensus 138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~ 181 (193)
..+++|||+|++|.+|..++..+...|++|+++.++.++.+.++
T Consensus 51 ~~~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r~~~~~~~l~ 94 (367)
T PLN02686 51 AEARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVDTQEDKEKLR 94 (367)
T ss_pred CCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 45789999999999999999999999999998887766554443
No 212
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=95.39 E-value=0.046 Score=42.31 Aligned_cols=38 Identities=21% Similarity=0.061 Sum_probs=32.4
Q ss_pred CCCeEEEEcCC--chHHHHHHHHHHHCCCEEEEEeCCcch
Q 029425 139 PGESFLVHGGS--SGIGTFAIQMGKCQGVRVFVTAGLATR 176 (193)
Q Consensus 139 ~~~~vli~ga~--g~~G~~~i~~~~~~g~~v~~~~~~~~~ 176 (193)
.+++++|+|++ +++|.++++.+...|++|+++.++++.
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~ 48 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKA 48 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhh
Confidence 46899999997 489999999988899999999887543
No 213
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=95.35 E-value=0.048 Score=45.41 Aligned_cols=40 Identities=20% Similarity=0.317 Sum_probs=34.9
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHH
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFI 178 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~ 178 (193)
.+++++|+|++|++|.+.++.+...|++|+++.+++++.+
T Consensus 177 ~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~~~l~ 216 (406)
T PRK07424 177 KGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNSDKIT 216 (406)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 3679999999999999999988889999999998776553
No 214
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=95.34 E-value=0.05 Score=41.96 Aligned_cols=44 Identities=25% Similarity=0.082 Sum_probs=35.0
Q ss_pred CCCeEEEEcCC--chHHHHHHHHHHHCCCEEEEEeCCcchHHHHhh
Q 029425 139 PGESFLVHGGS--SGIGTFAIQMGKCQGVRVFVTAGLATRFILCQP 182 (193)
Q Consensus 139 ~~~~vli~ga~--g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~ 182 (193)
.+++++|+|++ +++|.++++.+...|++|+++.++++..+.+++
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~~~ 51 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSLQK 51 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHHHh
Confidence 47899999998 699999999988899999999877443333333
No 215
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=95.32 E-value=0.045 Score=42.80 Aligned_cols=37 Identities=19% Similarity=0.083 Sum_probs=32.0
Q ss_pred CCCeEEEEcCCc--hHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425 139 PGESFLVHGGSS--GIGTFAIQMGKCQGVRVFVTAGLAT 175 (193)
Q Consensus 139 ~~~~vli~ga~g--~~G~~~i~~~~~~g~~v~~~~~~~~ 175 (193)
+++++||+|+++ ++|.+.++.+...|++|++..++++
T Consensus 6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~ 44 (271)
T PRK06505 6 QGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEA 44 (271)
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchH
Confidence 468999999975 9999999999899999999887653
No 216
>PRK08303 short chain dehydrogenase; Provisional
Probab=95.31 E-value=0.055 Score=43.19 Aligned_cols=35 Identities=29% Similarity=0.322 Sum_probs=32.1
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGL 173 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~ 173 (193)
.+++++|+|+++++|..+++.+...|++|+++.++
T Consensus 7 ~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~ 41 (305)
T PRK08303 7 RGKVALVAGATRGAGRGIAVELGAAGATVYVTGRS 41 (305)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecc
Confidence 46899999999999999999999999999999886
No 217
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=95.28 E-value=0.13 Score=42.95 Aligned_cols=116 Identities=16% Similarity=0.157 Sum_probs=75.1
Q ss_pred CCCCcceEEEEEEecCCCCCCCCCCEEE-----------------EEccCceeeeEEeecCCceEE---C-CCCCCHHhH
Q 029425 59 PYPGLECSGTILSVGKNVSRWKVGDQVC-----------------ALLGGGGYAEKVAVPAGQVLP---V-PSGVSLKDA 117 (193)
Q Consensus 59 ~~lg~e~~G~V~~vG~~~~~~~~G~~V~-----------------~~~~~g~~~~~~~~~~~~~~~---~-p~~~~~~~a 117 (193)
..-|.|+++.+.+|+++....-+|+.-+ +..-++.|++++.+++ .+.. + +..++...+
T Consensus 88 ~~~~~~a~~hl~~Va~GldS~V~GE~qI~gQvk~a~~~a~~~~~~g~~l~~lf~~a~~~~k-~vr~~t~i~~~~vSv~~~ 166 (417)
T TIGR01035 88 ILTGESAVEHLFRVASGLDSMVVGETQILGQVKNAYKVAQEEKTVGKVLERLFQKAFSVGK-RVRTETDISAGAVSISSA 166 (417)
T ss_pred hcCchHHHHHHHHHHhhhhhhhcCChHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhh-hhhhhcCCCCCCcCHHHH
Confidence 3578888999999998877666665532 1111367777777665 3332 2 222232222
Q ss_pred ccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCC-CEEEEEeCCcchHH-HHhhcCC
Q 029425 118 AAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQG-VRVFVTAGLATRFI-LCQPFNI 185 (193)
Q Consensus 118 a~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g-~~v~~~~~~~~~~~-~~~~~G~ 185 (193)
| .-.+. .....-++++++|.|+ |.+|..+++.++..| .+|+++.++.++.. +++++|.
T Consensus 167 A--------v~la~-~~~~~l~~~~VlViGa-G~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~ 226 (417)
T TIGR01035 167 A--------VELAE-RIFGSLKGKKALLIGA-GEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGG 226 (417)
T ss_pred H--------HHHHH-HHhCCccCCEEEEECC-hHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCC
Confidence 1 11122 2223356799999997 999999999999999 58999999888754 5556665
No 218
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=95.27 E-value=0.12 Score=40.93 Aligned_cols=43 Identities=19% Similarity=0.149 Sum_probs=38.3
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHh
Q 029425 138 SPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQ 181 (193)
Q Consensus 138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~ 181 (193)
.++++++|.|| |+.+.+++..+...|+ +++++.|+.+|.+.+.
T Consensus 124 ~~~~~vlilGA-GGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La 167 (283)
T COG0169 124 VTGKRVLILGA-GGAARAVAFALAEAGAKRITVVNRTRERAEELA 167 (283)
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHH
Confidence 35899999998 9999999999999996 8999999999887774
No 219
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=95.25 E-value=0.059 Score=43.74 Aligned_cols=43 Identities=19% Similarity=0.271 Sum_probs=36.1
Q ss_pred CCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHH
Q 029425 136 HLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFI 178 (193)
Q Consensus 136 ~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~ 178 (193)
+-..+.++||+|++|.+|..+++.+...|.+|+++.++.++..
T Consensus 6 ~~~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~ 48 (353)
T PLN02896 6 RESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSL 48 (353)
T ss_pred cccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHH
Confidence 3456779999999999999999999999999999887765443
No 220
>PRK06484 short chain dehydrogenase; Validated
Probab=95.24 E-value=0.051 Score=46.46 Aligned_cols=47 Identities=17% Similarity=0.162 Sum_probs=40.2
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhh-cCC
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQP-FNI 185 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~-~G~ 185 (193)
.+++++|+|+++++|...++.+...|++|+++.+++++.+.+.+ +|.
T Consensus 268 ~~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~ 315 (520)
T PRK06484 268 SPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGAKKLAEALGD 315 (520)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCC
Confidence 46789999999999999999999999999999998887776654 443
No 221
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=95.15 E-value=0.058 Score=41.84 Aligned_cols=36 Identities=22% Similarity=0.263 Sum_probs=30.8
Q ss_pred CCCeEEEEcCCc--hHHHHHHHHHHHCCCEEEEEeCCc
Q 029425 139 PGESFLVHGGSS--GIGTFAIQMGKCQGVRVFVTAGLA 174 (193)
Q Consensus 139 ~~~~vli~ga~g--~~G~~~i~~~~~~g~~v~~~~~~~ 174 (193)
.+++++|+|+++ ++|.++++.+...|++|++..+++
T Consensus 7 ~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~ 44 (260)
T PRK06603 7 QGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSE 44 (260)
T ss_pred CCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCch
Confidence 468899999986 799999888888899999888764
No 222
>PRK06720 hypothetical protein; Provisional
Probab=95.14 E-value=0.084 Score=38.44 Aligned_cols=40 Identities=30% Similarity=0.300 Sum_probs=34.6
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHH
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFI 178 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~ 178 (193)
.+.+++|+|+++++|...+..+...|++|+++.++++..+
T Consensus 15 ~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~ 54 (169)
T PRK06720 15 AGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQ 54 (169)
T ss_pred CCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence 4679999999999999999988888999999998766553
No 223
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=95.12 E-value=0.3 Score=35.55 Aligned_cols=68 Identities=13% Similarity=0.057 Sum_probs=44.3
Q ss_pred cchHHHHHHHHHHhcCCCCCCeEEEEcCCch-HHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEec
Q 029425 121 PEVACTVWSTVFMTSHLSPGESFLVHGGSSG-IGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIG 190 (193)
Q Consensus 121 ~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~-~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~ 190 (193)
|.....+...+.....--.+.+++|.|+ |. +|..++..++..|++|+++.++.+++... =..+|.+|.
T Consensus 25 p~~~~a~v~l~~~~~~~l~gk~vlViG~-G~~~G~~~a~~L~~~g~~V~v~~r~~~~l~~~-l~~aDiVIs 93 (168)
T cd01080 25 PCTPAGILELLKRYGIDLAGKKVVVVGR-SNIVGKPLAALLLNRNATVTVCHSKTKNLKEH-TKQADIVIV 93 (168)
T ss_pred CChHHHHHHHHHHcCCCCCCCEEEEECC-cHHHHHHHHHHHhhCCCEEEEEECCchhHHHH-HhhCCEEEE
Confidence 3333344433433333347899999998 65 69999999999999999999876544321 134566654
No 224
>PLN02730 enoyl-[acyl-carrier-protein] reductase
Probab=95.09 E-value=0.061 Score=43.01 Aligned_cols=39 Identities=15% Similarity=0.240 Sum_probs=32.9
Q ss_pred CCCeEEEEcC--CchHHHHHHHHHHHCCCEEEEEeCCcchHH
Q 029425 139 PGESFLVHGG--SSGIGTFAIQMGKCQGVRVFVTAGLATRFI 178 (193)
Q Consensus 139 ~~~~vli~ga--~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~ 178 (193)
.|+++||+|+ ++++|.++++.+...|++|++ .+..++++
T Consensus 8 ~gk~alITGa~~s~GIG~a~A~~la~~Ga~Vv~-~~~~~~l~ 48 (303)
T PLN02730 8 RGKRAFIAGVADDNGYGWAIAKALAAAGAEILV-GTWVPALN 48 (303)
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEE-EeCcchhh
Confidence 4789999999 799999999999999999998 55545443
No 225
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=95.07 E-value=0.067 Score=41.35 Aligned_cols=39 Identities=23% Similarity=0.366 Sum_probs=32.5
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC-CcchH
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG-LATRF 177 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~-~~~~~ 177 (193)
++++++|+|+++++|..++..+...|++|+++.+ ++++.
T Consensus 7 ~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~ 46 (260)
T PRK08416 7 KGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVEEA 46 (260)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHH
Confidence 4689999999999999999999999999988764 34433
No 226
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=95.02 E-value=0.16 Score=40.03 Aligned_cols=43 Identities=16% Similarity=0.118 Sum_probs=36.7
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHHHCC-CEEEEEeCCcchHHHHh
Q 029425 138 SPGESFLVHGGSSGIGTFAIQMGKCQG-VRVFVTAGLATRFILCQ 181 (193)
Q Consensus 138 ~~~~~vli~ga~g~~G~~~i~~~~~~g-~~v~~~~~~~~~~~~~~ 181 (193)
..+.+++|+|+ |++|.+++..+...| .+|+++.|+.++.+.+.
T Consensus 121 ~~~k~vlVlGa-Gg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~ 164 (278)
T PRK00258 121 LKGKRILILGA-GGAARAVILPLLDLGVAEITIVNRTVERAEELA 164 (278)
T ss_pred CCCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHH
Confidence 35678999997 999999999999999 58999999988775553
No 227
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.98 E-value=0.1 Score=40.18 Aligned_cols=44 Identities=25% Similarity=0.273 Sum_probs=34.2
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc-chHHHHhh
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA-TRFILCQP 182 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~-~~~~~~~~ 182 (193)
.+.+++|+|++|.+|..+++.+...|++|++..+.. +..+.+++
T Consensus 6 ~~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~ 50 (255)
T PRK06463 6 KGKVALITGGTRGIGRAIAEAFLREGAKVAVLYNSAENEAKELRE 50 (255)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHh
Confidence 367899999999999999999998999998876543 33344433
No 228
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=94.98 E-value=0.16 Score=40.21 Aligned_cols=42 Identities=19% Similarity=0.117 Sum_probs=36.3
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHh
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQ 181 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~ 181 (193)
.+.+++|.|+ |+.|.+++..+...|+ +++++.++.+|.+.+.
T Consensus 126 ~~k~vlIlGa-GGaaraia~aL~~~G~~~I~I~nR~~~ka~~la 168 (284)
T PRK12549 126 SLERVVQLGA-GGAGAAVAHALLTLGVERLTIFDVDPARAAALA 168 (284)
T ss_pred cCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence 4578999997 9999999999999998 7999999988876553
No 229
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=94.96 E-value=0.17 Score=39.71 Aligned_cols=44 Identities=14% Similarity=0.117 Sum_probs=36.4
Q ss_pred CCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425 136 HLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC 180 (193)
Q Consensus 136 ~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~ 180 (193)
....+++++|+|+ |++|.+.+..+...|++|+++.++.++.+.+
T Consensus 113 ~~~~~k~vliiGa-Gg~g~aia~~L~~~g~~v~v~~R~~~~~~~l 156 (270)
T TIGR00507 113 PLRPNQRVLIIGA-GGAARAVALPLLKADCNVIIANRTVSKAEEL 156 (270)
T ss_pred CCccCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 3345789999998 9999999988888899999999988776544
No 230
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=94.92 E-value=0.069 Score=43.34 Aligned_cols=48 Identities=15% Similarity=0.115 Sum_probs=37.1
Q ss_pred HHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc
Q 029425 126 TVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA 174 (193)
Q Consensus 126 ~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~ 174 (193)
|+|--|+....++ ..+|||+|++|-+|..++..+...|.+|+++++..
T Consensus 2 ~~~~~~~~~~~~~-~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~ 49 (348)
T PRK15181 2 TAYEELRTKLVLA-PKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFS 49 (348)
T ss_pred chhhhhhhccccc-CCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 3454443334443 46899999999999999999999999999998743
No 231
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=94.90 E-value=0.066 Score=41.46 Aligned_cols=38 Identities=29% Similarity=0.367 Sum_probs=33.0
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcch
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATR 176 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~ 176 (193)
.+.+++|+|++|.+|..+++.+...|++|+++.+++++
T Consensus 8 ~~k~vlItG~s~gIG~~la~~l~~~G~~v~~~~~~~~~ 45 (266)
T PRK06171 8 QGKIIIVTGGSSGIGLAIVKELLANGANVVNADIHGGD 45 (266)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCccc
Confidence 46789999999999999999999999999988876543
No 232
>PLN00011 cysteine synthase
Probab=94.86 E-value=0.24 Score=39.95 Aligned_cols=57 Identities=19% Similarity=0.329 Sum_probs=45.6
Q ss_pred HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425 133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI 189 (193)
Q Consensus 133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~ 189 (193)
+.+.+.++...+|..++|+.|+++...++.+|.+.+++.. ++.+.+.++.+|++.++
T Consensus 61 ~~g~~~~g~~~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~ 120 (323)
T PLN00011 61 DKGLITPGKSTLIEATAGNTGIGLACIGAARGYKVILVMPSTMSLERRIILRALGAEVHL 120 (323)
T ss_pred HcCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Confidence 5566778854556678899999999999999999888876 34588888999997654
No 233
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=94.85 E-value=0.1 Score=44.22 Aligned_cols=52 Identities=19% Similarity=0.225 Sum_probs=42.7
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc---------------------chHHHHhhcCCcEEecC
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA---------------------TRFILCQPFNIRVFIGF 191 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~---------------------~~~~~~~~~G~~~~~~~ 191 (193)
++++++|+|+ |..|+.++..++..|.+|+++.+.+ ...+.++++|++..+|.
T Consensus 140 ~~~~V~IIG~-GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~ 212 (467)
T TIGR01318 140 TGKRVAVIGA-GPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNC 212 (467)
T ss_pred CCCeEEEECC-CHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCC
Confidence 5789999998 9999999999999999999887654 24567788998766553
No 234
>PLN02427 UDP-apiose/xylose synthase
Probab=94.84 E-value=0.075 Score=43.72 Aligned_cols=44 Identities=9% Similarity=-0.004 Sum_probs=34.6
Q ss_pred CCCCCCeEEEEcCCchHHHHHHHHHHHC-CCEEEEEeCCcchHHH
Q 029425 136 HLSPGESFLVHGGSSGIGTFAIQMGKCQ-GVRVFVTAGLATRFIL 179 (193)
Q Consensus 136 ~~~~~~~vli~ga~g~~G~~~i~~~~~~-g~~v~~~~~~~~~~~~ 179 (193)
+.-+..+|||+|++|.+|..+++.+... |.+|++++++.++...
T Consensus 10 ~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~ 54 (386)
T PLN02427 10 KPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKH 54 (386)
T ss_pred CcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhh
Confidence 3344568999999999999999988887 5899999876654433
No 235
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=94.81 E-value=0.2 Score=39.44 Aligned_cols=44 Identities=11% Similarity=0.070 Sum_probs=37.0
Q ss_pred CCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHH
Q 029425 136 HLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILC 180 (193)
Q Consensus 136 ~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~ 180 (193)
....+++++|.|+ |+.+.+++..+...|+ +++++.|+.++.+.+
T Consensus 118 ~~~~~~~vlilGa-GGaarAi~~aL~~~g~~~i~i~nR~~~~a~~l 162 (272)
T PRK12550 118 QVPPDLVVALRGS-GGMAKAVAAALRDAGFTDGTIVARNEKTGKAL 162 (272)
T ss_pred CCCCCCeEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHH
Confidence 3445678999997 9999999999999998 699999998887765
No 236
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=94.77 E-value=0.1 Score=40.35 Aligned_cols=36 Identities=19% Similarity=0.302 Sum_probs=32.0
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA 174 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~ 174 (193)
++++++|+|+++.+|...++.+...|++++++.++.
T Consensus 6 ~~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~ 41 (261)
T PRK08936 6 EGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSD 41 (261)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCC
Confidence 578999999999999999999999999998887743
No 237
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=94.72 E-value=0.17 Score=34.01 Aligned_cols=43 Identities=19% Similarity=0.115 Sum_probs=37.6
Q ss_pred EEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCc
Q 029425 143 FLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIR 186 (193)
Q Consensus 143 vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~ 186 (193)
++|.|. |.+|..+++.++..+.+|++++.++++.+.+++.|..
T Consensus 1 vvI~G~-g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~ 43 (116)
T PF02254_consen 1 VVIIGY-GRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVE 43 (116)
T ss_dssp EEEES--SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSE
T ss_pred eEEEcC-CHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccc
Confidence 578887 9999999999999777999999999999999998864
No 238
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=94.71 E-value=0.086 Score=41.26 Aligned_cols=36 Identities=17% Similarity=0.093 Sum_probs=31.1
Q ss_pred CCCeEEEEcCC--chHHHHHHHHHHHCCCEEEEEeCCc
Q 029425 139 PGESFLVHGGS--SGIGTFAIQMGKCQGVRVFVTAGLA 174 (193)
Q Consensus 139 ~~~~vli~ga~--g~~G~~~i~~~~~~g~~v~~~~~~~ 174 (193)
.+++++|+|++ +++|...++.+...|++|+++.+++
T Consensus 9 ~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~ 46 (272)
T PRK08159 9 AGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGD 46 (272)
T ss_pred cCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCch
Confidence 46799999996 7999999999989999999887653
No 239
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=94.68 E-value=0.085 Score=40.85 Aligned_cols=35 Identities=17% Similarity=0.180 Sum_probs=30.4
Q ss_pred CCCeEEEEcCC--chHHHHHHHHHHHCCCEEEEEeCC
Q 029425 139 PGESFLVHGGS--SGIGTFAIQMGKCQGVRVFVTAGL 173 (193)
Q Consensus 139 ~~~~vli~ga~--g~~G~~~i~~~~~~g~~v~~~~~~ 173 (193)
.+++++|+|++ +++|.++++.+...|++|+++.++
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~ 42 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAG 42 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCc
Confidence 46899999986 799999999888899999988654
No 240
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=94.68 E-value=0.34 Score=38.55 Aligned_cols=56 Identities=18% Similarity=0.301 Sum_probs=43.8
Q ss_pred HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425 133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI 189 (193)
Q Consensus 133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~ 189 (193)
+.+.+.+|+++ |..++|+.|.++...++.+|++.+++.. ++.+.+.++.+|++.++
T Consensus 50 ~~g~~~~g~~v-v~aSsGN~g~alA~~a~~~Gl~~~i~vp~~~~~~k~~~~~~~GA~v~~ 108 (298)
T TIGR01139 50 KRGLLKPGKTI-VEPTSGNTGIALAMVAAARGYKLILTMPETMSIERRKLLKAYGAELVL 108 (298)
T ss_pred HcCCCCCCCEE-EEeCCChhHHHHHHHHHHcCCeEEEEeCCccCHHHHHHHHHcCCEEEE
Confidence 34455666665 6677799999999999999998877776 35578888999997654
No 241
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=94.65 E-value=0.41 Score=37.81 Aligned_cols=55 Identities=22% Similarity=0.269 Sum_probs=46.3
Q ss_pred HHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhh
Q 029425 126 TVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQP 182 (193)
Q Consensus 126 ~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~ 182 (193)
.+...+....+++||+++|=+| .+=|.+++-+|+..|++|+.++-|+++.+.+++
T Consensus 59 ~k~~~~~~kl~L~~G~~lLDiG--CGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~ 113 (283)
T COG2230 59 AKLDLILEKLGLKPGMTLLDIG--CGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEK 113 (283)
T ss_pred HHHHHHHHhcCCCCCCEEEEeC--CChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHH
Confidence 3444455778999999999998 567899999999999999999999998877754
No 242
>PRK07201 short chain dehydrogenase; Provisional
Probab=94.52 E-value=0.098 Score=46.05 Aligned_cols=41 Identities=29% Similarity=0.329 Sum_probs=36.0
Q ss_pred CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425 140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC 180 (193)
Q Consensus 140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~ 180 (193)
+.+++|+|++|++|..++..+...|++|+++.+++++.+.+
T Consensus 371 ~k~vlItGas~giG~~la~~l~~~G~~V~~~~r~~~~~~~~ 411 (657)
T PRK07201 371 GKVVLITGASSGIGRATAIKVAEAGATVFLVARNGEALDEL 411 (657)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 57899999999999999998888999999999988776544
No 243
>PRK06128 oxidoreductase; Provisional
Probab=94.50 E-value=0.12 Score=40.93 Aligned_cols=36 Identities=22% Similarity=0.257 Sum_probs=31.4
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA 174 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~ 174 (193)
.++++||+|+++.+|..++..+...|++|+++.++.
T Consensus 54 ~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~ 89 (300)
T PRK06128 54 QGRKALITGADSGIGRATAIAFAREGADIALNYLPE 89 (300)
T ss_pred CCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCc
Confidence 467999999999999999999999999998876543
No 244
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=94.48 E-value=0.081 Score=41.66 Aligned_cols=50 Identities=22% Similarity=0.201 Sum_probs=37.1
Q ss_pred HHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHh
Q 029425 130 TVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQ 181 (193)
Q Consensus 130 ~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~ 181 (193)
.+.+..++++|++||=+|+ +-|..++.+++..|++|..++-|+++.++++
T Consensus 53 ~~~~~~~l~~G~~vLDiGc--GwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~ 102 (273)
T PF02353_consen 53 LLCEKLGLKPGDRVLDIGC--GWGGLAIYAAERYGCHVTGITLSEEQAEYAR 102 (273)
T ss_dssp HHHTTTT--TT-EEEEES---TTSHHHHHHHHHH--EEEEEES-HHHHHHHH
T ss_pred HHHHHhCCCCCCEEEEeCC--CccHHHHHHHHHcCcEEEEEECCHHHHHHHH
Confidence 3447788999999999984 4788899999999999999999999988875
No 245
>PRK11761 cysM cysteine synthase B; Provisional
Probab=94.48 E-value=0.34 Score=38.56 Aligned_cols=57 Identities=12% Similarity=0.246 Sum_probs=44.8
Q ss_pred HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEec
Q 029425 133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFIG 190 (193)
Q Consensus 133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~~ 190 (193)
..+.+.++++++. .++|+.|.++...++.+|.+++++.. +++|.+.++.+|+..++.
T Consensus 56 ~~g~~~~g~~vv~-aSsGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~~ 115 (296)
T PRK11761 56 KRGEIKPGDTLIE-ATSGNTGIALAMIAAIKGYRMKLIMPENMSQERRAAMRAYGAELILV 115 (296)
T ss_pred HcCCCCCCCEEEE-eCCChHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEe
Confidence 4455667777555 56799999999999999998888776 457888999999976653
No 246
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=94.47 E-value=0.1 Score=46.37 Aligned_cols=42 Identities=19% Similarity=0.190 Sum_probs=36.5
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC 180 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~ 180 (193)
.++++||+|++|.+|..+++.+...|++|+++.++.++.+.+
T Consensus 413 ~gkvvLVTGasggIG~aiA~~La~~Ga~Vvi~~r~~~~~~~~ 454 (676)
T TIGR02632 413 ARRVAFVTGGAGGIGRETARRLAAEGAHVVLADLNLEAAEAV 454 (676)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCCHHHHHHH
Confidence 368999999999999999999988999999999987765443
No 247
>PRK06701 short chain dehydrogenase; Provisional
Probab=94.46 E-value=0.13 Score=40.60 Aligned_cols=37 Identities=24% Similarity=0.313 Sum_probs=32.6
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT 175 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~ 175 (193)
++.++||+|++|.+|..++..+...|++|+++.++++
T Consensus 45 ~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~ 81 (290)
T PRK06701 45 KGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEH 81 (290)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence 4678999999999999999988889999999887653
No 248
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.39 E-value=0.48 Score=37.56 Aligned_cols=53 Identities=15% Similarity=0.090 Sum_probs=39.1
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecC
Q 029425 138 SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGF 191 (193)
Q Consensus 138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~ 191 (193)
-.|.+++|.|+++.+|.....++...|++|++.-+....+...- .++|.+++.
T Consensus 157 l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t~~L~~~~-~~aDIvI~A 209 (283)
T PRK14192 157 LAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRTQNLPELV-KQADIIVGA 209 (283)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCchhHHHHh-ccCCEEEEc
Confidence 46889999998556999999999999998887776333222111 478888874
No 249
>PRK05855 short chain dehydrogenase; Validated
Probab=94.29 E-value=0.12 Score=44.46 Aligned_cols=42 Identities=21% Similarity=0.169 Sum_probs=36.3
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC 180 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~ 180 (193)
.+.++||+|++|++|..+++.+...|++|+++.++.++.+.+
T Consensus 314 ~~~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~ 355 (582)
T PRK05855 314 SGKLVVVTGAGSGIGRETALAFAREGAEVVASDIDEAAAERT 355 (582)
T ss_pred CCCEEEEECCcCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 357899999999999999999888999999999988776543
No 250
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=94.29 E-value=0.13 Score=40.93 Aligned_cols=44 Identities=18% Similarity=0.223 Sum_probs=36.2
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHh
Q 029425 138 SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQ 181 (193)
Q Consensus 138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~ 181 (193)
+.|++.+|+||+.++|.+.+.-+-+.|.+|+++.|+++|++...
T Consensus 47 ~~g~WAVVTGaTDGIGKayA~eLAkrG~nvvLIsRt~~KL~~v~ 90 (312)
T KOG1014|consen 47 KLGSWAVVTGATDGIGKAYARELAKRGFNVVLISRTQEKLEAVA 90 (312)
T ss_pred hcCCEEEEECCCCcchHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 45789999999999997755444448999999999999997663
No 251
>PRK09134 short chain dehydrogenase; Provisional
Probab=94.25 E-value=0.16 Score=39.09 Aligned_cols=35 Identities=23% Similarity=0.168 Sum_probs=30.7
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGL 173 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~ 173 (193)
.+.+++|+|++|.+|..+++.+...|++|+++.+.
T Consensus 8 ~~k~vlItGas~giG~~la~~l~~~g~~v~~~~~~ 42 (258)
T PRK09134 8 APRAALVTGAARRIGRAIALDLAAHGFDVAVHYNR 42 (258)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 46789999999999999999998899999887654
No 252
>PLN02214 cinnamoyl-CoA reductase
Probab=94.24 E-value=0.11 Score=42.01 Aligned_cols=38 Identities=18% Similarity=0.211 Sum_probs=33.9
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcch
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATR 176 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~ 176 (193)
++.+++|+|++|.+|..++..+...|.+|++++++.++
T Consensus 9 ~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~ 46 (342)
T PLN02214 9 AGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDD 46 (342)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchh
Confidence 56789999999999999999999999999999887654
No 253
>PRK07985 oxidoreductase; Provisional
Probab=94.23 E-value=0.14 Score=40.61 Aligned_cols=35 Identities=31% Similarity=0.313 Sum_probs=31.0
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGL 173 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~ 173 (193)
.+++++|+|+++.+|..+++.+...|++|+++.++
T Consensus 48 ~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~ 82 (294)
T PRK07985 48 KDRKALVTGGDSGIGRAAAIAYAREGADVAISYLP 82 (294)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecCC
Confidence 46799999999999999999999999999987654
No 254
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=94.21 E-value=0.46 Score=37.70 Aligned_cols=56 Identities=13% Similarity=0.252 Sum_probs=44.1
Q ss_pred HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC---cchHHHHhhcCCcEEe
Q 029425 133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGL---ATRFILCQPFNIRVFI 189 (193)
Q Consensus 133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~---~~~~~~~~~~G~~~~~ 189 (193)
..+.+.+++++ |..++|+.|.++..+++.+|.+.+++... +.|.+.++.+|++.++
T Consensus 52 ~~g~~~~g~~v-v~aSsGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~ 110 (290)
T TIGR01138 52 KRGEIKPGDVL-IEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERKAAMRAYGAELIL 110 (290)
T ss_pred HcCCCCCCCEE-EEECCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCEEEE
Confidence 34555667665 44677999999999999999998888763 4688899999997554
No 255
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=94.19 E-value=0.24 Score=35.80 Aligned_cols=46 Identities=17% Similarity=0.125 Sum_probs=37.9
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc-hHHHHhhcCC
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT-RFILCQPFNI 185 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~-~~~~~~~~G~ 185 (193)
.+++|.|+|- |..|.+..+-+|..|.+|++..+... ..+.+++.|+
T Consensus 3 ~~k~IAViGy-GsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf 49 (165)
T PF07991_consen 3 KGKTIAVIGY-GSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGF 49 (165)
T ss_dssp CTSEEEEES--SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-
T ss_pred CCCEEEEECC-ChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCC
Confidence 4689999997 99999999999999999999998877 7888888887
No 256
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=94.17 E-value=0.18 Score=44.62 Aligned_cols=52 Identities=19% Similarity=0.144 Sum_probs=43.3
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc---------------------hHHHHhhcCCcEEecC
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT---------------------RFILCQPFNIRVFIGF 191 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~---------------------~~~~~~~~G~~~~~~~ 191 (193)
.+++++|+|+ |..|+.++..++..|.+|+++.+.+. +.++++++|++..++.
T Consensus 309 ~~kkVaIIG~-GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~ 381 (639)
T PRK12809 309 RSEKVAVIGA-GPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNC 381 (639)
T ss_pred CCCEEEEECc-CHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCC
Confidence 4899999997 99999999999999999999987653 4566778888766654
No 257
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=94.13 E-value=0.15 Score=40.32 Aligned_cols=41 Identities=22% Similarity=0.161 Sum_probs=35.7
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHH
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILC 180 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~ 180 (193)
.+.+++|.|+ |+.+.+++..+..+|+ +++++.|+.+|.+.+
T Consensus 124 ~~k~vlvlGa-GGaarai~~aL~~~G~~~i~I~nRt~~ka~~L 165 (282)
T TIGR01809 124 AGFRGLVIGA-GGTSRAAVYALASLGVTDITVINRNPDKLSRL 165 (282)
T ss_pred CCceEEEEcC-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHH
Confidence 4778999997 9999999999999998 799999998877655
No 258
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=94.13 E-value=0.16 Score=44.97 Aligned_cols=35 Identities=17% Similarity=0.140 Sum_probs=31.7
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA 174 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~ 174 (193)
.+++|+|+|+ |..|++++..++.+|.+|+++.+.+
T Consensus 326 ~~~~VaIIGa-GpAGLsaA~~L~~~G~~V~V~E~~~ 360 (654)
T PRK12769 326 SDKRVAIIGA-GPAGLACADVLARNGVAVTVYDRHP 360 (654)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEecCC
Confidence 5789999998 9999999999999999999998754
No 259
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.11 E-value=0.26 Score=39.27 Aligned_cols=35 Identities=23% Similarity=0.261 Sum_probs=31.2
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGL 173 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~ 173 (193)
.+.+++|+|+++++|...+..+...|++|++..++
T Consensus 11 ~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~ 45 (306)
T PRK07792 11 SGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVA 45 (306)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCC
Confidence 46799999999999999999888899999988764
No 260
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=94.09 E-value=0.34 Score=38.39 Aligned_cols=42 Identities=19% Similarity=0.150 Sum_probs=35.6
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHh
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQ 181 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~ 181 (193)
.+++++|.|+ |+.+.+++..+...|+ +++++.|+.+|.+.+.
T Consensus 126 ~~k~vlilGa-GGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La 168 (283)
T PRK14027 126 KLDSVVQVGA-GGVGNAVAYALVTHGVQKLQVADLDTSRAQALA 168 (283)
T ss_pred CCCeEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHH
Confidence 4678999998 9999998888888997 7899999988876663
No 261
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=94.05 E-value=0.26 Score=35.64 Aligned_cols=49 Identities=20% Similarity=0.142 Sum_probs=36.3
Q ss_pred CCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCc
Q 029425 137 LSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIR 186 (193)
Q Consensus 137 ~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~ 186 (193)
.=.|++++|.|= |.+|.-+++.++.+|++|+++...+-+.-.+..-|+.
T Consensus 20 ~l~Gk~vvV~GY-G~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~ 68 (162)
T PF00670_consen 20 MLAGKRVVVIGY-GKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFE 68 (162)
T ss_dssp --TTSEEEEE---SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-E
T ss_pred eeCCCEEEEeCC-CcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcE
Confidence 457889999995 9999999999999999999999888776666555653
No 262
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=94.02 E-value=0.14 Score=42.39 Aligned_cols=42 Identities=24% Similarity=0.253 Sum_probs=35.9
Q ss_pred cCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcch
Q 029425 135 SHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATR 176 (193)
Q Consensus 135 ~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~ 176 (193)
.+-..+.+++|+|++|.+|..+++.+...|.+|++++++..+
T Consensus 55 ~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~ 96 (390)
T PLN02657 55 SKEPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSG 96 (390)
T ss_pred ccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhh
Confidence 344567899999999999999999999899999999987643
No 263
>PLN00198 anthocyanidin reductase; Provisional
Probab=94.02 E-value=0.15 Score=41.05 Aligned_cols=37 Identities=19% Similarity=0.170 Sum_probs=32.5
Q ss_pred CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcch
Q 029425 140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATR 176 (193)
Q Consensus 140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~ 176 (193)
+.++||+|++|.+|..++..+...|++|++++++.++
T Consensus 9 ~~~vlItG~~GfIG~~l~~~L~~~g~~V~~~~r~~~~ 45 (338)
T PLN00198 9 KKTACVIGGTGFLASLLIKLLLQKGYAVNTTVRDPEN 45 (338)
T ss_pred CCeEEEECCchHHHHHHHHHHHHCCCEEEEEECCCCC
Confidence 6789999999999999999999999999888776543
No 264
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=94.01 E-value=0.35 Score=38.37 Aligned_cols=35 Identities=17% Similarity=0.183 Sum_probs=30.4
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCE-EEEEeCCc
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVR-VFVTAGLA 174 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~-v~~~~~~~ 174 (193)
.+++++|+|+ |+.|.+++..+...|++ |+++.|+.
T Consensus 125 ~~k~vlI~GA-GGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 125 KGKKLTVIGA-GGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 4678999998 89999988888889995 99999886
No 265
>PF13823 ADH_N_assoc: Alcohol dehydrogenase GroES-associated; PDB: 2DPH_B.
Probab=94.00 E-value=0.065 Score=25.36 Aligned_cols=22 Identities=45% Similarity=0.795 Sum_probs=14.3
Q ss_pred CEEEEEcCCCCCCceEEEeecCCCC
Q 029425 1 MKAIVITQPGSPEVLQLQEVEDPQI 25 (193)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~ 25 (193)
|||++++.+++ +++++++.|.+
T Consensus 1 MkAv~y~G~~~---v~ve~VpdP~I 22 (23)
T PF13823_consen 1 MKAVVYHGPKD---VRVEEVPDPKI 22 (23)
T ss_dssp -EEEEEEETTE---EEEEEE----S
T ss_pred CcceEEeCCCc---eEEEECCCccc
Confidence 89999997655 89999988764
No 266
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.98 E-value=0.17 Score=42.57 Aligned_cols=35 Identities=26% Similarity=0.331 Sum_probs=31.9
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGL 173 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~ 173 (193)
++++++|+|++|.+|..+++.+...|++|+++.++
T Consensus 209 ~g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~ 243 (450)
T PRK08261 209 AGKVALVTGAARGIGAAIAEVLARDGAHVVCLDVP 243 (450)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 47899999999999999999999999999998874
No 267
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=93.93 E-value=0.19 Score=38.64 Aligned_cols=35 Identities=17% Similarity=0.138 Sum_probs=31.0
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGL 173 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~ 173 (193)
.+.+++|+|+++.+|..+++.+...|++|+.+.++
T Consensus 9 ~~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~~ 43 (253)
T PRK08993 9 EGKVAVVTGCDTGLGQGMALGLAEAGCDIVGINIV 43 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEecCc
Confidence 36799999999999999999999999999887654
No 268
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=93.90 E-value=0.18 Score=38.92 Aligned_cols=36 Identities=28% Similarity=0.308 Sum_probs=31.3
Q ss_pred CCCeEEEEcC--CchHHHHHHHHHHHCCCEEEEEeCCc
Q 029425 139 PGESFLVHGG--SSGIGTFAIQMGKCQGVRVFVTAGLA 174 (193)
Q Consensus 139 ~~~~vli~ga--~g~~G~~~i~~~~~~g~~v~~~~~~~ 174 (193)
.+++++|+|+ ++++|..+++.+...|++|+++.++.
T Consensus 6 ~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~ 43 (256)
T PRK07889 6 EGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGR 43 (256)
T ss_pred cCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCcc
Confidence 4679999998 79999999998888999999988653
No 269
>KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.81 E-value=0.29 Score=39.06 Aligned_cols=47 Identities=28% Similarity=0.414 Sum_probs=42.2
Q ss_pred CCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhh
Q 029425 136 HLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQP 182 (193)
Q Consensus 136 ~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~ 182 (193)
+.++...++|+|++.++|.+...-++..|+.|.++.++.+|+..+.+
T Consensus 29 ~~k~~~hi~itggS~glgl~la~e~~~~ga~Vti~ar~~~kl~~a~~ 75 (331)
T KOG1210|consen 29 KPKPRRHILITGGSSGLGLALALECKREGADVTITARSGKKLLEAKA 75 (331)
T ss_pred ccCccceEEEecCcchhhHHHHHHHHHccCceEEEeccHHHHHHHHh
Confidence 34566899999999999999999999999999999999999988764
No 270
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=93.81 E-value=0.16 Score=38.86 Aligned_cols=36 Identities=22% Similarity=0.224 Sum_probs=31.9
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA 174 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~ 174 (193)
.++++||+|++|.+|..++..+...|++|+++.++.
T Consensus 7 ~~k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~~ 42 (252)
T PRK08220 7 SGKTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQAF 42 (252)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecch
Confidence 467899999999999999999988999999888755
No 271
>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase. This family consists of D-serine ammonia-lyase (EC 4.3.1.18), a pyridoxal-phosphate enzyme that converts D-serine to pyruvate and NH3. This enzyme is also called D-serine dehydratase and D-serine deaminase and was previously designated EC 4.2.1.14. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine.
Probab=93.78 E-value=0.31 Score=41.00 Aligned_cols=48 Identities=13% Similarity=0.045 Sum_probs=40.5
Q ss_pred eEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425 142 SFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI 189 (193)
Q Consensus 142 ~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~ 189 (193)
..+|.+++|+.|+.+...++.+|++++++.. +.+|.+.++.+|+..++
T Consensus 153 ~~Vv~aSsGN~G~slA~~Aa~lG~~~~IvmP~~a~~~K~~~ir~~GAeVv~ 203 (431)
T TIGR02035 153 YSIAVGSTGNLGLSIGIISAALGFQVTVHMSADAKQWKKDKLRSKGVTVVE 203 (431)
T ss_pred ceEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEE
Confidence 4677788899999999999999998877776 55688999999996655
No 272
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=93.72 E-value=0.2 Score=39.22 Aligned_cols=47 Identities=21% Similarity=0.278 Sum_probs=39.3
Q ss_pred hcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC--EEEEEeCCcchHHHHhh
Q 029425 134 TSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV--RVFVTAGLATRFILCQP 182 (193)
Q Consensus 134 ~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~--~v~~~~~~~~~~~~~~~ 182 (193)
...++++++||.+|+ |. |..++++++..+. +|+.++.+++.++.+++
T Consensus 72 ~~~~~~g~~VLDiG~-G~-G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~ 120 (272)
T PRK11873 72 LAELKPGETVLDLGS-GG-GFDCFLAARRVGPTGKVIGVDMTPEMLAKARA 120 (272)
T ss_pred hccCCCCCEEEEeCC-CC-CHHHHHHHHHhCCCCEEEEECCCHHHHHHHHH
Confidence 356789999999996 66 8888888888764 69999999998888875
No 273
>PRK10717 cysteine synthase A; Provisional
Probab=93.72 E-value=0.58 Score=37.81 Aligned_cols=56 Identities=13% Similarity=0.227 Sum_probs=43.3
Q ss_pred HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425 133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI 189 (193)
Q Consensus 133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~ 189 (193)
..+.++++++|+. .++|+.|.++...++.+|.+.+++.. ++.+.+.++.+|++.++
T Consensus 57 ~~g~~~~g~~vv~-aSsGN~g~alA~~a~~~G~~~~vv~p~~~~~~k~~~~~~~GA~V~~ 115 (330)
T PRK10717 57 KRGLLKPGGTIVE-GTAGNTGIGLALVAAARGYKTVIVMPETQSQEKKDLLRALGAELVL 115 (330)
T ss_pred HcCCCCCCCEEEE-eCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEE
Confidence 3445567766554 66799999999999999998777776 45588888999997554
No 274
>KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.64 E-value=0.2 Score=36.80 Aligned_cols=45 Identities=22% Similarity=0.232 Sum_probs=39.9
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhc
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPF 183 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~ 183 (193)
.|..++++|+.-++|...++.+...|++|+++.|+++.+..+-++
T Consensus 6 aG~~vlvTgagaGIG~~~v~~La~aGA~ViAvaR~~a~L~sLV~e 50 (245)
T KOG1207|consen 6 AGVIVLVTGAGAGIGKEIVLSLAKAGAQVIAVARNEANLLSLVKE 50 (245)
T ss_pred cceEEEeecccccccHHHHHHHHhcCCEEEEEecCHHHHHHHHhh
Confidence 467899999989999999999999999999999999988777543
No 275
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia. D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.
Probab=93.60 E-value=0.36 Score=40.21 Aligned_cols=48 Identities=15% Similarity=0.066 Sum_probs=40.7
Q ss_pred eEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425 142 SFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI 189 (193)
Q Consensus 142 ~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~ 189 (193)
.-+|..++|+.|+++...++.+|++.+++.. +.+|.+.++.+|+..+.
T Consensus 135 ~~VV~aSsGN~G~alA~~a~~~G~~~~IvvP~~~~~~K~~~ira~GAeVv~ 185 (404)
T cd06447 135 YSIAVGSTGNLGLSIGIMAAALGFKVTVHMSADAKQWKKDKLRSKGVTVVE 185 (404)
T ss_pred CEEEEECccHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHCCCEEEE
Confidence 3577788899999999999999998887776 66788999999996554
No 276
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.53 E-value=0.37 Score=40.95 Aligned_cols=50 Identities=20% Similarity=0.080 Sum_probs=39.0
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc-----hHHHHhhcCCcEEe
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT-----RFILCQPFNIRVFI 189 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~-----~~~~~~~~G~~~~~ 189 (193)
.+++++|.|+ |.+|+.++.+++..|++|+++.+.+. ..+.+++.|+....
T Consensus 15 ~~~~v~viG~-G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~ 69 (480)
T PRK01438 15 QGLRVVVAGL-GVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRL 69 (480)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEE
Confidence 4678999997 99999999999999999999886542 23456677875443
No 277
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=93.51 E-value=0.69 Score=32.64 Aligned_cols=46 Identities=13% Similarity=0.182 Sum_probs=36.6
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHHHCC-CEEEEEeCCcchHHHH-hhcC
Q 029425 138 SPGESFLVHGGSSGIGTFAIQMGKCQG-VRVFVTAGLATRFILC-QPFN 184 (193)
Q Consensus 138 ~~~~~vli~ga~g~~G~~~i~~~~~~g-~~v~~~~~~~~~~~~~-~~~G 184 (193)
..+.+++|+|+ |.+|...++.+...| .+|+++.++.++.+.+ ++++
T Consensus 17 ~~~~~i~iiG~-G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~ 64 (155)
T cd01065 17 LKGKKVLILGA-GGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFG 64 (155)
T ss_pred CCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHh
Confidence 45688999997 999999999988886 6899999888776654 3444
No 278
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=93.49 E-value=0.43 Score=30.83 Aligned_cols=45 Identities=9% Similarity=0.146 Sum_probs=36.2
Q ss_pred eEEEEcCCchHHHHHHHHHHHCC---CEEEEE-eCCcchHHHHh-hcCCcE
Q 029425 142 SFLVHGGSSGIGTFAIQMGKCQG---VRVFVT-AGLATRFILCQ-PFNIRV 187 (193)
Q Consensus 142 ~vli~ga~g~~G~~~i~~~~~~g---~~v~~~-~~~~~~~~~~~-~~G~~~ 187 (193)
+|.++|+ |.+|.+.+.-+...| .+++++ .+++++.+.+. ++++..
T Consensus 1 kI~iIG~-G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~ 50 (96)
T PF03807_consen 1 KIGIIGA-GNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQA 50 (96)
T ss_dssp EEEEEST-SHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEE
T ss_pred CEEEECC-CHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhcccc
Confidence 4677786 999999999999999 789955 99999888775 567543
No 279
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=93.41 E-value=0.86 Score=36.25 Aligned_cols=56 Identities=16% Similarity=0.323 Sum_probs=43.8
Q ss_pred HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425 133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI 189 (193)
Q Consensus 133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~ 189 (193)
..+.+.+++++ +..++|+.|.++...++.+|.+.+++.. ++.|.+.++.+|++.++
T Consensus 51 ~~g~~~~g~~v-v~aSsGN~g~alA~~a~~~G~~~~i~vp~~~~~~k~~~~~~~GA~v~~ 109 (299)
T TIGR01136 51 KRGLLKPGDTI-IEATSGNTGIALAMVAAAKGYKLILTMPETMSLERRKLLRAYGAELIL 109 (299)
T ss_pred HcCCCCCCCEE-EEeCCChHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEE
Confidence 34445667765 5667799999999999999998777776 45688889999997665
No 280
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=93.39 E-value=0.24 Score=43.05 Aligned_cols=47 Identities=19% Similarity=0.157 Sum_probs=42.4
Q ss_pred CeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEE
Q 029425 141 ESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVF 188 (193)
Q Consensus 141 ~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~ 188 (193)
++++|.|. |.+|+.+++.++..|.++++++.++++.+.+++.|...+
T Consensus 418 ~hiiI~G~-G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i 464 (558)
T PRK10669 418 NHALLVGY-GRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAV 464 (558)
T ss_pred CCEEEECC-ChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEE
Confidence 68899997 999999999999999999999999999999998887544
No 281
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=93.37 E-value=0.29 Score=40.47 Aligned_cols=58 Identities=24% Similarity=0.168 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhc
Q 029425 124 ACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPF 183 (193)
Q Consensus 124 ~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~ 183 (193)
-...+..+....++++++++|-+|+ +.|..+..+++..|++|+.++.+++..+.+++.
T Consensus 152 q~~k~~~l~~~l~l~~g~rVLDIGc--G~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~ 209 (383)
T PRK11705 152 QEAKLDLICRKLQLKPGMRVLDIGC--GWGGLARYAAEHYGVSVVGVTISAEQQKLAQER 209 (383)
T ss_pred HHHHHHHHHHHhCCCCCCEEEEeCC--CccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 3444555556678899999999985 578888899998899999999999999888763
No 282
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=93.33 E-value=1.1 Score=32.36 Aligned_cols=70 Identities=11% Similarity=0.055 Sum_probs=42.7
Q ss_pred cCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEe
Q 029425 119 AFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFI 189 (193)
Q Consensus 119 ~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~ 189 (193)
.+|+.....+..|....---.|++++|.|.+..+|.-+..++++.|+.|...-...+.++..- ..+|.++
T Consensus 15 ~~PcTp~aii~lL~~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~~~~-~~ADIVV 84 (160)
T PF02882_consen 15 FVPCTPLAIIELLEYYGIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQEIT-RRADIVV 84 (160)
T ss_dssp S--HHHHHHHHHHHHTT-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHHHHH-TTSSEEE
T ss_pred CcCCCHHHHHHHHHhcCCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCccccee-eeccEEe
Confidence 344444455555533322347899999999899999999999999999998876554443322 3555555
No 283
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.27 E-value=0.28 Score=37.20 Aligned_cols=47 Identities=23% Similarity=0.256 Sum_probs=39.3
Q ss_pred CCCeEEEEcCC-chHHHHHHHHHHHCCCEEEEEeCCcchHHHHh-hcCC
Q 029425 139 PGESFLVHGGS-SGIGTFAIQMGKCQGVRVFVTAGLATRFILCQ-PFNI 185 (193)
Q Consensus 139 ~~~~vli~ga~-g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~-~~G~ 185 (193)
....|+|+|++ |++|.++..-....|+.|+++.|+-+.+..+. ++|.
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~~gl 54 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQFGL 54 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHhhCC
Confidence 44678888766 99999988888888999999999999888776 5665
No 284
>KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]
Probab=93.25 E-value=0.37 Score=38.48 Aligned_cols=45 Identities=20% Similarity=0.221 Sum_probs=39.2
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhh
Q 029425 138 SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQP 182 (193)
Q Consensus 138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~ 182 (193)
..++.|+|+|+.+++|..++.-+...|.+|++.+-.++..+.++.
T Consensus 27 ~~~k~VlITGCDSGfG~~LA~~L~~~Gf~V~Agcl~~~gae~L~~ 71 (322)
T KOG1610|consen 27 LSDKAVLITGCDSGFGRLLAKKLDKKGFRVFAGCLTEEGAESLRG 71 (322)
T ss_pred cCCcEEEEecCCcHHHHHHHHHHHhcCCEEEEEeecCchHHHHhh
Confidence 456779999999999999999999999999999988887777653
No 285
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=93.22 E-value=0.43 Score=33.17 Aligned_cols=49 Identities=12% Similarity=0.121 Sum_probs=35.7
Q ss_pred EEEEcCCchHHHHHHHHHHHCC--CEEEEEeCCcchH---HHHhhcCCcEEecC
Q 029425 143 FLVHGGSSGIGTFAIQMGKCQG--VRVFVTAGLATRF---ILCQPFNIRVFIGF 191 (193)
Q Consensus 143 vli~ga~g~~G~~~i~~~~~~g--~~v~~~~~~~~~~---~~~~~~G~~~~~~~ 191 (193)
|.|.|++|.+|..++++.++.. ++|+....+.+-. +.+++|....+.-+
T Consensus 1 i~ILGsTGSIG~qtLdVi~~~~d~f~v~~Lsa~~n~~~L~~q~~~f~p~~v~i~ 54 (129)
T PF02670_consen 1 IAILGSTGSIGTQTLDVIRKHPDKFEVVALSAGSNIEKLAEQAREFKPKYVVIA 54 (129)
T ss_dssp EEEESTTSHHHHHHHHHHHHCTTTEEEEEEEESSTHHHHHHHHHHHT-SEEEES
T ss_pred CEEEcCCcHHHHHHHHHHHhCCCceEEEEEEcCCCHHHHHHHHHHhCCCEEEEc
Confidence 5789999999999999999987 7888777654432 34456777665543
No 286
>PRK06381 threonine synthase; Validated
Probab=93.15 E-value=0.36 Score=38.75 Aligned_cols=51 Identities=12% Similarity=0.161 Sum_probs=41.3
Q ss_pred CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEec
Q 029425 140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFIG 190 (193)
Q Consensus 140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~~ 190 (193)
|.+.+|...+|+.|.++...++.+|.+.+++.. +..+.+.++.+|++.++.
T Consensus 62 g~~~lv~aSsGN~g~alA~~aa~~G~~~~ivvp~~~~~~~~~~l~~~GA~V~~~ 115 (319)
T PRK06381 62 GYSGITVGTCGNYGASIAYFARLYGLKAVIFIPRSYSNSRVKEMEKYGAEIIYV 115 (319)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEc
Confidence 445667778899999999999999998887776 356788899999976654
No 287
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=93.14 E-value=0.66 Score=36.84 Aligned_cols=35 Identities=17% Similarity=0.293 Sum_probs=28.8
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCc
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLA 174 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~ 174 (193)
.+++++|.|+ |+.+.+++..+...|+ +++++.|++
T Consensus 123 ~~k~vlvlGa-GGaarAi~~~l~~~g~~~i~i~nRt~ 158 (288)
T PRK12749 123 KGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRD 158 (288)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 5678999998 8889887776777887 899999985
No 288
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=93.08 E-value=0.23 Score=40.81 Aligned_cols=36 Identities=14% Similarity=0.093 Sum_probs=32.4
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC
Q 029425 138 SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGL 173 (193)
Q Consensus 138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~ 173 (193)
..+.+|+|+|++|.+|..++..+...|.+|+++++.
T Consensus 19 ~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~ 54 (370)
T PLN02695 19 SEKLRICITGAGGFIASHIARRLKAEGHYIIASDWK 54 (370)
T ss_pred CCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEec
Confidence 456899999999999999999999999999998864
No 289
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=93.08 E-value=0.29 Score=43.12 Aligned_cols=48 Identities=17% Similarity=0.247 Sum_probs=43.0
Q ss_pred CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEE
Q 029425 140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVF 188 (193)
Q Consensus 140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~ 188 (193)
.++++|.|. |.+|+..++.+++.|.++++++.++++.+.+++.|...+
T Consensus 400 ~~~vII~G~-Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~ 447 (621)
T PRK03562 400 QPRVIIAGF-GRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVF 447 (621)
T ss_pred cCcEEEEec-ChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEE
Confidence 368999997 999999999999999999999999999999999987543
No 290
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.08 E-value=0.31 Score=38.63 Aligned_cols=46 Identities=20% Similarity=0.225 Sum_probs=36.0
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchH----HHHhhcC
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRF----ILCQPFN 184 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~----~~~~~~G 184 (193)
.|+.+||+|+.+++|.+.++-...+|+++++.+.+++-. +.+++.|
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g 86 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIG 86 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcC
Confidence 689999999999999988877777899988888766533 4444455
No 291
>PRK12744 short chain dehydrogenase; Provisional
Probab=93.08 E-value=0.25 Score=37.97 Aligned_cols=34 Identities=21% Similarity=0.367 Sum_probs=29.4
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG 172 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~ 172 (193)
.+.+++|+|++|.+|..+++.+...|++|+++.+
T Consensus 7 ~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~ 40 (257)
T PRK12744 7 KGKVVLIAGGAKNLGGLIARDLAAQGAKAVAIHY 40 (257)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCCcEEEEec
Confidence 3578999999999999999999989999776654
No 292
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=93.08 E-value=0.82 Score=38.57 Aligned_cols=56 Identities=11% Similarity=0.217 Sum_probs=44.4
Q ss_pred HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425 133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI 189 (193)
Q Consensus 133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~ 189 (193)
..+.+.+|++++- .++|+.|.++...++.+|++++++.. +++|...++.+|++.++
T Consensus 55 ~~g~~~~g~~vv~-~ssGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~ 113 (454)
T TIGR01137 55 ASGRLKPGDTIIE-PTSGNTGIGLALVAAIKGYKCIIVLPEKMSNEKVDVLKALGAEIVR 113 (454)
T ss_pred HcCCCCCCCEEEE-eCCcHHHHHHHHHHHHcCCeEEEEeCCCcCHHHHHHHHHCCCEEEE
Confidence 4455677766554 56799999999999999999888876 45688889999997554
No 293
>PLN02206 UDP-glucuronate decarboxylase
Probab=93.05 E-value=0.22 Score=42.01 Aligned_cols=35 Identities=23% Similarity=0.355 Sum_probs=31.6
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC
Q 029425 138 SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG 172 (193)
Q Consensus 138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~ 172 (193)
.++.+|||+|++|.+|..+++.+...|.+|+++++
T Consensus 117 ~~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld~ 151 (442)
T PLN02206 117 RKGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVDN 151 (442)
T ss_pred cCCCEEEEECcccHHHHHHHHHHHHCcCEEEEEeC
Confidence 35689999999999999999999999999998864
No 294
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=93.04 E-value=0.32 Score=43.15 Aligned_cols=39 Identities=13% Similarity=-0.012 Sum_probs=33.1
Q ss_pred CCCCCeEEEEcCCchHHHHHHHHHHHC-CCEEEEEeCCcc
Q 029425 137 LSPGESFLVHGGSSGIGTFAIQMGKCQ-GVRVFVTAGLAT 175 (193)
Q Consensus 137 ~~~~~~vli~ga~g~~G~~~i~~~~~~-g~~v~~~~~~~~ 175 (193)
.+++.+|||+|++|.+|..+++.+... |.+|+++++...
T Consensus 312 ~~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r~~~ 351 (660)
T PRK08125 312 AKRRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIGSD 351 (660)
T ss_pred hhcCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeCCch
Confidence 456789999999999999999988875 689999987554
No 295
>PRK06110 hypothetical protein; Provisional
Probab=93.02 E-value=0.57 Score=37.75 Aligned_cols=47 Identities=4% Similarity=0.039 Sum_probs=38.4
Q ss_pred EEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425 143 FLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI 189 (193)
Q Consensus 143 vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~ 189 (193)
-+|...+|+.|+++...++.+|.+.+++.. ++.|.+.++.+|+..+.
T Consensus 72 ~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~ 121 (322)
T PRK06110 72 GVISATRGNHGQSVAFAARRHGLAATIVVPHGNSVEKNAAMRALGAELIE 121 (322)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEE
Confidence 377788899999999999999998777775 34677888899986543
No 296
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=92.88 E-value=0.25 Score=41.55 Aligned_cols=36 Identities=19% Similarity=0.275 Sum_probs=32.3
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC
Q 029425 138 SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGL 173 (193)
Q Consensus 138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~ 173 (193)
+++.+|||+|++|.+|..++..+.+.|.+|+++++.
T Consensus 118 ~~~mkILVTGatGFIGs~Lv~~Ll~~G~~V~~ldr~ 153 (436)
T PLN02166 118 RKRLRIVVTGGAGFVGSHLVDKLIGRGDEVIVIDNF 153 (436)
T ss_pred cCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCC
Confidence 456789999999999999999999999999998864
No 297
>PLN02970 serine racemase
Probab=92.80 E-value=0.58 Score=37.84 Aligned_cols=46 Identities=11% Similarity=0.081 Sum_probs=38.0
Q ss_pred EEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425 144 LVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI 189 (193)
Q Consensus 144 li~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~ 189 (193)
+|..++|+.|.++...++.+|.+++++.. +++|.+.++.+|+..+.
T Consensus 78 vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~Vi~ 126 (328)
T PLN02970 78 VVTHSSGNHAAALALAAKLRGIPAYIVVPKNAPACKVDAVIRYGGIITW 126 (328)
T ss_pred EEEECCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhcCCEEEE
Confidence 55566799999999999999999888886 46678888999996554
No 298
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=92.78 E-value=1.1 Score=35.48 Aligned_cols=53 Identities=17% Similarity=0.280 Sum_probs=40.9
Q ss_pred CCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425 136 HLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI 189 (193)
Q Consensus 136 ~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~ 189 (193)
..++++++ +..++|+.|.++...++.+|.+.+++.. ++.+.+.++.+|++.++
T Consensus 49 ~~~~~~~v-v~~SsGN~g~alA~~a~~~G~~~~i~vp~~~~~~k~~~~~~~Ga~v~~ 104 (291)
T cd01561 49 LLKPGTTI-IEPTSGNTGIGLAMVAAAKGYRFIIVMPETMSEEKRKLLRALGAEVIL 104 (291)
T ss_pred CCCCCCEE-EEeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCEEEE
Confidence 34455554 5577899999999999999998777776 35578888999996543
No 299
>PRK07048 serine/threonine dehydratase; Validated
Probab=92.71 E-value=0.58 Score=37.68 Aligned_cols=46 Identities=11% Similarity=0.055 Sum_probs=37.3
Q ss_pred EEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425 144 LVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI 189 (193)
Q Consensus 144 li~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~ 189 (193)
+|..++|+.|.++...++.+|++++++.. ++.|.+.++.+|+..++
T Consensus 75 vv~aSsGN~g~alA~~a~~~G~~~~vvvp~~~~~~k~~~~~~~GAeV~~ 123 (321)
T PRK07048 75 VVTFSSGNHAQAIALSARLLGIPATIVMPQDAPAAKVAATRGYGGEVVT 123 (321)
T ss_pred EEEeCCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEE
Confidence 45556799999999999999998887776 44577888899997554
No 300
>PLN02356 phosphateglycerate kinase
Probab=92.66 E-value=0.92 Score=38.05 Aligned_cols=55 Identities=13% Similarity=0.176 Sum_probs=42.8
Q ss_pred hcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425 134 TSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI 189 (193)
Q Consensus 134 ~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~ 189 (193)
.+.++++.+| +..++|+.|.++..+++.+|++++++.. +++|.+.++.+|+..+.
T Consensus 98 ~g~~~~~g~V-veaSSGN~g~alA~~aa~~G~~~~ivvP~~~s~~K~~~ir~~GAeVi~ 155 (423)
T PLN02356 98 SGQLFPGGVV-TEGSAGSTAISLATVAPAYGCKCHVVIPDDVAIEKSQILEALGATVER 155 (423)
T ss_pred CCccCCCCEE-EEeCCHHHHHHHHHHHHHcCCcEEEEECCCCcHHHHHHHHHcCCEEEE
Confidence 3445566654 4466799999999999999999888876 46788999999997553
No 301
>PRK06608 threonine dehydratase; Provisional
Probab=92.62 E-value=0.66 Score=37.71 Aligned_cols=47 Identities=11% Similarity=0.044 Sum_probs=38.6
Q ss_pred EEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425 143 FLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI 189 (193)
Q Consensus 143 vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~ 189 (193)
.+|..++|+.|.++...++.+|.+.+++.. +++|.+.++.+|+..++
T Consensus 74 ~vv~~SsGN~g~alA~~a~~~G~~~~vv~p~~~~~~k~~~l~~~GA~V~~ 123 (338)
T PRK06608 74 KIVAYSTGNHGQAVAYASKLFGIKTRIYLPLNTSKVKQQAALYYGGEVIL 123 (338)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEE
Confidence 456778899999999999999998777765 45678889999996554
No 302
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=92.61 E-value=0.44 Score=29.77 Aligned_cols=33 Identities=21% Similarity=0.114 Sum_probs=29.5
Q ss_pred eEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425 142 SFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT 175 (193)
Q Consensus 142 ~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~ 175 (193)
+++|.|+ |.+|.-++..++.+|.+|.++.+++.
T Consensus 1 ~vvViGg-G~ig~E~A~~l~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 1 RVVVIGG-GFIGIELAEALAELGKEVTLIERSDR 33 (80)
T ss_dssp EEEEESS-SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEEEECc-CHHHHHHHHHHHHhCcEEEEEeccch
Confidence 5789997 99999999999999999999998665
No 303
>PLN02572 UDP-sulfoquinovose synthase
Probab=92.61 E-value=0.25 Score=41.67 Aligned_cols=33 Identities=18% Similarity=0.150 Sum_probs=30.1
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEe
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTA 171 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~ 171 (193)
++.+|||+||+|.+|..+++.+...|++|++++
T Consensus 46 ~~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~~d 78 (442)
T PLN02572 46 KKKKVMVIGGDGYCGWATALHLSKRGYEVAIVD 78 (442)
T ss_pred cCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEe
Confidence 467899999999999999999999999999875
No 304
>PRK14982 acyl-ACP reductase; Provisional
Probab=92.56 E-value=0.35 Score=39.34 Aligned_cols=43 Identities=21% Similarity=0.271 Sum_probs=35.3
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHH-CCC-EEEEEeCCcchHHHHh
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKC-QGV-RVFVTAGLATRFILCQ 181 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~-~g~-~v~~~~~~~~~~~~~~ 181 (193)
.+.+++|+||+|.+|..+++.+.. .|. +++++.++.+++..+.
T Consensus 154 ~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La 198 (340)
T PRK14982 154 SKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQ 198 (340)
T ss_pred CCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHH
Confidence 568999999999999999888864 564 8889998877776654
No 305
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=92.55 E-value=0.67 Score=36.82 Aligned_cols=49 Identities=8% Similarity=0.112 Sum_probs=38.5
Q ss_pred CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425 140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI 189 (193)
Q Consensus 140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~ 189 (193)
.++++. .++|+.|.++..+++.+|.+++++.. ++++.+.++.+|+..+.
T Consensus 65 ~~~iv~-~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~l~~~Ga~vi~ 116 (304)
T cd01562 65 AKGVVA-ASAGNHAQGVAYAAKLLGIPATIVMPETAPAAKVDATRAYGAEVVL 116 (304)
T ss_pred CCcEEE-ECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEE
Confidence 345544 45699999999999999999888877 34578888999986544
No 306
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=92.38 E-value=0.46 Score=34.18 Aligned_cols=42 Identities=17% Similarity=0.071 Sum_probs=32.3
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhc
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPF 183 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~ 183 (193)
.|.+|+|.|+ |.+|..-++.+...|++|.++. ++..+.++++
T Consensus 12 ~~~~vlVvGG-G~va~rka~~Ll~~ga~V~VIs--p~~~~~l~~l 53 (157)
T PRK06719 12 HNKVVVIIGG-GKIAYRKASGLKDTGAFVTVVS--PEICKEMKEL 53 (157)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEc--CccCHHHHhc
Confidence 4788999998 9999999998888999998884 3433444444
No 307
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=92.32 E-value=0.36 Score=41.72 Aligned_cols=42 Identities=26% Similarity=0.305 Sum_probs=35.9
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHh
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQ 181 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~ 181 (193)
.+++++|+|+ |++|.+++..+...|++|+++.++.++.+.+.
T Consensus 378 ~~k~vlIlGa-GGagrAia~~L~~~G~~V~i~nR~~e~a~~la 419 (529)
T PLN02520 378 AGKLFVVIGA-GGAGKALAYGAKEKGARVVIANRTYERAKELA 419 (529)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence 3578999998 99999999999999999999999877766553
No 308
>PRK02991 D-serine dehydratase; Provisional
Probab=92.14 E-value=0.78 Score=38.72 Aligned_cols=48 Identities=15% Similarity=0.087 Sum_probs=40.1
Q ss_pred eEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425 142 SFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI 189 (193)
Q Consensus 142 ~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~ 189 (193)
..+|..++|+.|+++...++.+|.+.+++.. ++.|.+.++.+|+..++
T Consensus 158 ~~VV~aSsGN~G~alA~aA~~~G~~~tIvvP~~a~~~K~~~ir~~GAeVi~ 208 (441)
T PRK02991 158 YSIAVGSTGNLGLSIGIMSAALGFKVTVHMSADARQWKKDKLRSHGVTVVE 208 (441)
T ss_pred cEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEE
Confidence 3577788899999999999999998777765 66688999999996554
No 309
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=92.11 E-value=0.47 Score=41.69 Aligned_cols=48 Identities=13% Similarity=0.183 Sum_probs=42.6
Q ss_pred CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEE
Q 029425 140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVF 188 (193)
Q Consensus 140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~ 188 (193)
.+.++|.|. |.+|+.+++.++..|.++++++.++++.+.+++.|...+
T Consensus 400 ~~~vII~G~-Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~ 447 (601)
T PRK03659 400 KPQVIIVGF-GRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVY 447 (601)
T ss_pred cCCEEEecC-chHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEE
Confidence 357888896 999999999999999999999999999999999887543
No 310
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=92.02 E-value=0.64 Score=35.68 Aligned_cols=48 Identities=6% Similarity=0.149 Sum_probs=38.1
Q ss_pred eEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425 142 SFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI 189 (193)
Q Consensus 142 ~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~ 189 (193)
..+|..++|+.|.++...++..|.+++++.. ++.+.+.++.+|+..+.
T Consensus 51 ~~vv~~ssGN~g~alA~~a~~~g~~~~v~~p~~~~~~~~~~~~~~Ga~v~~ 101 (244)
T cd00640 51 GVIIESTGGNTGIALAAAAARLGLKCTIVMPEGASPEKVAQMRALGAEVVL 101 (244)
T ss_pred CEEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEE
Confidence 4556666699999999999999999888877 45577778889986543
No 311
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=92.00 E-value=0.27 Score=32.59 Aligned_cols=35 Identities=23% Similarity=0.270 Sum_probs=30.9
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA 174 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~ 174 (193)
.+.+++|.|+ |.+|..-++.+...|++|+++....
T Consensus 6 ~~~~vlVvGg-G~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 6 KGKRVLVVGG-GPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp TT-EEEEEEE-SHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCEEEEECCch
Confidence 4688999998 9999999999999999999999774
No 312
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=91.96 E-value=0.49 Score=36.71 Aligned_cols=39 Identities=13% Similarity=0.150 Sum_probs=34.4
Q ss_pred CCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425 136 HLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT 175 (193)
Q Consensus 136 ~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~ 175 (193)
...|..+++|.|+ |.++..++++++.+|++|++++..++
T Consensus 96 ~~~p~~~L~IfGa-G~va~~la~la~~lGf~V~v~D~R~~ 134 (246)
T TIGR02964 96 EAPPAPHVVLFGA-GHVGRALVRALAPLPCRVTWVDSREA 134 (246)
T ss_pred ccCCCCEEEEECC-cHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence 3567789999998 99999999999999999999886655
No 313
>PRK08198 threonine dehydratase; Provisional
Probab=91.95 E-value=0.98 Score=37.59 Aligned_cols=49 Identities=6% Similarity=0.109 Sum_probs=38.2
Q ss_pred CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425 140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI 189 (193)
Q Consensus 140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~ 189 (193)
++++ |..++|+.|+++...++.+|.+.+++.. +.+|.+.++.+|+..++
T Consensus 70 ~~~v-v~aSsGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vi~ 121 (404)
T PRK08198 70 ARGV-VAASAGNHAQGVAYAASLLGIKATIVMPETAPLSKVKATRSYGAEVVL 121 (404)
T ss_pred CCEE-EEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEE
Confidence 4555 4455699999999999999998777766 45677888999996554
No 314
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=91.88 E-value=1 Score=38.04 Aligned_cols=36 Identities=17% Similarity=0.340 Sum_probs=30.8
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc
Q 029425 138 SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA 174 (193)
Q Consensus 138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~ 174 (193)
-.|.+|.|.|. |.+|..+++.+..+|++|+.+..+.
T Consensus 235 l~Gk~VaVqG~-GnVg~~aa~~L~e~GakVVavSD~~ 270 (454)
T PTZ00079 235 LEGKTVVVSGS-GNVAQYAVEKLLQLGAKVLTMSDSD 270 (454)
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEEcCC
Confidence 36889999996 9999999999999999999555443
No 315
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=91.87 E-value=0.47 Score=40.90 Aligned_cols=42 Identities=19% Similarity=0.234 Sum_probs=33.0
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHH
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILC 180 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~ 180 (193)
.|++|+|+||+|.+|.-.+.-....+. ++++..+++.++-..
T Consensus 249 ~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i 291 (588)
T COG1086 249 TGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLI 291 (588)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHH
Confidence 589999999999999876665555576 788888887776444
No 316
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=91.81 E-value=0.57 Score=37.81 Aligned_cols=46 Identities=22% Similarity=0.206 Sum_probs=38.3
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCC
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNI 185 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~ 185 (193)
.+++|.|+|- |.+|...++.++.+|.+|++..+.....+.++..|+
T Consensus 15 kgKtVGIIG~-GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~ 60 (335)
T PRK13403 15 QGKTVAVIGY-GSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGF 60 (335)
T ss_pred CcCEEEEEeE-cHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCC
Confidence 5789999996 999999999999999999998776555556666665
No 317
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=91.80 E-value=1.1 Score=37.09 Aligned_cols=59 Identities=14% Similarity=0.128 Sum_probs=42.5
Q ss_pred HHhHccCcchHHHHHHHHHHhcCC-CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425 114 LKDAAAFPEVACTVWSTVFMTSHL-SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT 175 (193)
Q Consensus 114 ~~~aa~~~~~~~~a~~~l~~~~~~-~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~ 175 (193)
..++......+.+- .++. ..+. =.|.+|.|.|. |.+|+.+++.+..+|++|+++..+..
T Consensus 182 r~~aTg~Gv~~~~~-~a~~-~~g~~l~G~rVaVQG~-GNVg~~aa~~l~~~GAkvva~sds~g 241 (411)
T COG0334 182 RSEATGYGVFYAIR-EALK-ALGDDLEGARVAVQGF-GNVGQYAAEKLHELGAKVVAVSDSKG 241 (411)
T ss_pred CCcccceehHHHHH-HHHH-HcCCCcCCCEEEEECc-cHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence 34454444443333 3443 3333 37899999996 99999999999999999999887766
No 318
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.71 E-value=0.48 Score=40.03 Aligned_cols=45 Identities=18% Similarity=0.136 Sum_probs=36.9
Q ss_pred CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCC
Q 029425 140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNI 185 (193)
Q Consensus 140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~ 185 (193)
+.+|+|+|. |..|+.++.+++..|++|.+.+........++++|+
T Consensus 9 ~~~i~viG~-G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~ 53 (460)
T PRK01390 9 GKTVAVFGL-GGSGLATARALVAGGAEVIAWDDNPASRAKAAAAGI 53 (460)
T ss_pred CCEEEEEee-cHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcCc
Confidence 568999997 999999999999999999999976554544555665
No 319
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.68 E-value=1.6 Score=34.58 Aligned_cols=70 Identities=11% Similarity=0.052 Sum_probs=45.8
Q ss_pred CcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEec
Q 029425 120 FPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIG 190 (193)
Q Consensus 120 ~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~ 190 (193)
+|+.....+..+....--=.|.+++|.|.+..+|.-+..++...|++|++..+....+... -..+|.+|.
T Consensus 138 ~PcTp~ai~~ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t~~l~~~-~~~ADIVIs 207 (286)
T PRK14175 138 VPCTPLGIMEILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSKDMASY-LKDADVIVS 207 (286)
T ss_pred CCCcHHHHHHHHHHcCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhHHHH-HhhCCEEEE
Confidence 4444444444443322123689999999967799999999999999999888654432211 135566554
No 320
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=91.58 E-value=1.1 Score=38.17 Aligned_cols=41 Identities=7% Similarity=0.047 Sum_probs=35.3
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC 180 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~ 180 (193)
.+.+++|+|+ |++|.+++..+...|+++++..++.++.+.+
T Consensus 331 ~~k~vlIiGa-GgiG~aia~~L~~~G~~V~i~~R~~~~~~~l 371 (477)
T PRK09310 331 NNQHVAIVGA-GGAAKAIATTLARAGAELLIFNRTKAHAEAL 371 (477)
T ss_pred CCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 4678999997 9999999999999999999999888776654
No 321
>PLN03139 formate dehydrogenase; Provisional
Probab=91.51 E-value=0.56 Score=38.84 Aligned_cols=46 Identities=17% Similarity=0.107 Sum_probs=36.2
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCC
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNI 185 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~ 185 (193)
.|.++.|+|. |.+|...++.++.+|++|+...++....+..++.|+
T Consensus 198 ~gktVGIVG~-G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~ 243 (386)
T PLN03139 198 EGKTVGTVGA-GRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKETGA 243 (386)
T ss_pred CCCEEEEEee-cHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhcCc
Confidence 4679999996 999999999999999999998876543333344444
No 322
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=91.45 E-value=0.76 Score=30.72 Aligned_cols=59 Identities=5% Similarity=0.041 Sum_probs=45.1
Q ss_pred HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCC--CEEEEEeCCcchHHHHhhcCCcEEecC
Q 029425 133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQG--VRVFVTAGLATRFILCQPFNIRVFIGF 191 (193)
Q Consensus 133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g--~~v~~~~~~~~~~~~~~~~G~~~~~~~ 191 (193)
+..+++.-+.+++.-..-..-..++..++.++ .++++...+++..+.++++|++.++++
T Consensus 56 ~~a~i~~a~~vv~~~~~d~~n~~~~~~~r~~~~~~~ii~~~~~~~~~~~l~~~g~d~vi~P 116 (116)
T PF02254_consen 56 ERAGIEKADAVVILTDDDEENLLIALLARELNPDIRIIARVNDPENAELLRQAGADHVISP 116 (116)
T ss_dssp HHTTGGCESEEEEESSSHHHHHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHTT-SEEEEH
T ss_pred hhcCccccCEEEEccCCHHHHHHHHHHHHHHCCCCeEEEEECCHHHHHHHHHCCcCEEECc
Confidence 45666766777777555566677888888743 589999999999999999999999864
No 323
>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]
Probab=91.31 E-value=0.52 Score=39.22 Aligned_cols=44 Identities=14% Similarity=0.064 Sum_probs=38.9
Q ss_pred CCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425 137 LSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC 180 (193)
Q Consensus 137 ~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~ 180 (193)
.....+|+|.||+|.+|+..++.++..|..|.+.+++.++.+-+
T Consensus 76 ~~~~~~VlVvGatG~vG~~iv~~llkrgf~vra~VRd~~~a~~~ 119 (411)
T KOG1203|consen 76 SKKPTTVLVVGATGKVGRRIVKILLKRGFSVRALVRDEQKAEDL 119 (411)
T ss_pred CCCCCeEEEecCCCchhHHHHHHHHHCCCeeeeeccChhhhhhh
Confidence 45567999999999999999999999999999999988876554
No 324
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=91.27 E-value=0.65 Score=30.67 Aligned_cols=42 Identities=24% Similarity=0.384 Sum_probs=35.2
Q ss_pred CCCeEEEEcCCchHHHHHHHHHH-HCCCEEEEEeCCcchHHHHhh
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGK-CQGVRVFVTAGLATRFILCQP 182 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~-~~g~~v~~~~~~~~~~~~~~~ 182 (193)
|+++||-.|+ +.|..++.+++ ..+++|+.++.+++..+.+++
T Consensus 1 p~~~vLDlGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~ 43 (112)
T PF12847_consen 1 PGGRVLDLGC--GTGRLSIALARLFPGARVVGVDISPEMLEIARE 43 (112)
T ss_dssp TTCEEEEETT--TTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHH
T ss_pred CCCEEEEEcC--cCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHH
Confidence 6788998884 55888888888 478999999999998888865
No 325
>PRK07574 formate dehydrogenase; Provisional
Probab=91.22 E-value=0.62 Score=38.58 Aligned_cols=36 Identities=19% Similarity=0.149 Sum_probs=32.2
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT 175 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~ 175 (193)
.|.+|.|+|. |.+|..+++.++.+|++|+...++..
T Consensus 191 ~gktVGIvG~-G~IG~~vA~~l~~fG~~V~~~dr~~~ 226 (385)
T PRK07574 191 EGMTVGIVGA-GRIGLAVLRRLKPFDVKLHYTDRHRL 226 (385)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCEEEEECCCCC
Confidence 4678999996 99999999999999999999998753
No 326
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=91.21 E-value=0.87 Score=31.24 Aligned_cols=32 Identities=13% Similarity=0.063 Sum_probs=26.0
Q ss_pred eEEEEcCCchHHHHHHHHHHH-CCCEEEEEeCC
Q 029425 142 SFLVHGGSSGIGTFAIQMGKC-QGVRVFVTAGL 173 (193)
Q Consensus 142 ~vli~ga~g~~G~~~i~~~~~-~g~~v~~~~~~ 173 (193)
+|.|+|++|.+|...++.+.+ .+.++.....+
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~ 34 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDR 34 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEET
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEec
Confidence 589999999999999999998 66786654433
No 327
>PRK08813 threonine dehydratase; Provisional
Probab=91.13 E-value=1.5 Score=35.81 Aligned_cols=46 Identities=9% Similarity=-0.011 Sum_probs=37.9
Q ss_pred EEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425 144 LVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI 189 (193)
Q Consensus 144 li~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~ 189 (193)
+|..++|+.|+++...++.+|.+.+++.. +..|.+.++.+|+..+.
T Consensus 84 VV~aSsGN~G~alA~aa~~~Gi~~~IvvP~~~~~~K~~~i~~~GAeVv~ 132 (349)
T PRK08813 84 VICASAGNHAQGVAWSAYRLGVQAITVMPHGAPQTKIAGVAHWGATVRQ 132 (349)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEE
Confidence 67778899999999999999998777664 55688888999996543
No 328
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=91.10 E-value=0.35 Score=33.92 Aligned_cols=34 Identities=21% Similarity=0.365 Sum_probs=28.0
Q ss_pred EEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchH
Q 029425 143 FLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRF 177 (193)
Q Consensus 143 vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~ 177 (193)
++|.|+ |.++.+++++++.+|++|++++..+++.
T Consensus 1 L~I~Ga-G~va~al~~la~~lg~~v~v~d~r~e~~ 34 (136)
T PF13478_consen 1 LVIFGA-GHVARALARLAALLGFRVTVVDPRPERF 34 (136)
T ss_dssp EEEES--STCHHHHHHHHHHCTEEEEEEES-CCC-
T ss_pred CEEEeC-cHHHHHHHHHHHhCCCEEEEEcCCcccc
Confidence 478887 9999999999999999999999876633
No 329
>PRK08638 threonine dehydratase; Validated
Probab=91.06 E-value=1.3 Score=35.86 Aligned_cols=47 Identities=9% Similarity=-0.041 Sum_probs=37.4
Q ss_pred EEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425 143 FLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI 189 (193)
Q Consensus 143 vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~ 189 (193)
.+|..++|+.|.++...++.+|.+.+++.. ++.|...++.+|+..++
T Consensus 77 ~vv~~SsGN~g~alA~~aa~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~ 126 (333)
T PRK08638 77 GVVACSAGNHAQGVALSCALLGIDGKVVMPKGAPKSKVAATCGYGAEVVL 126 (333)
T ss_pred eEEEeCCcHHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHcCCEEEE
Confidence 345556799999999999999998777776 34577888999996654
No 330
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=91.05 E-value=1.3 Score=37.02 Aligned_cols=45 Identities=9% Similarity=0.185 Sum_probs=37.4
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHh-hcC
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQ-PFN 184 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~-~~G 184 (193)
.+.+++|.|+ |.+|.+++..+...|+ +++++.|+.++.+.+. ++|
T Consensus 180 ~~kkvlviGa-G~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~ 226 (414)
T PRK13940 180 SSKNVLIIGA-GQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFR 226 (414)
T ss_pred cCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhc
Confidence 5678999997 9999999999999997 7999999988765554 354
No 331
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=91.05 E-value=1.7 Score=33.22 Aligned_cols=44 Identities=9% Similarity=0.194 Sum_probs=33.4
Q ss_pred HHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCE---EEEEeCC
Q 029425 129 STVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVR---VFVTAGL 173 (193)
Q Consensus 129 ~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~---v~~~~~~ 173 (193)
.++.....--.+.+++|.|+ |..|..++..+...|++ ++++.++
T Consensus 14 ~al~~~g~~l~~~rvlvlGA-GgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 14 NALKLVGKKIEEVKIVINGA-GAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred HHHHHhCCCccCCEEEEECc-hHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 34533332235679999998 99999999988888974 8899887
No 332
>PRK08246 threonine dehydratase; Provisional
Probab=90.98 E-value=1.6 Score=35.06 Aligned_cols=50 Identities=14% Similarity=0.183 Sum_probs=39.0
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI 189 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~ 189 (193)
++++ +|...+|+.|+++...++.+|.+++++.. ++.+...++.+|+..++
T Consensus 67 ~~~~-vv~aSsGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~ 119 (310)
T PRK08246 67 PAAG-VVAASGGNAGLAVAYAAAALGVPATVFVPETAPPAKVARLRALGAEVVV 119 (310)
T ss_pred cCCe-EEEeCCCHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHCCCEEEE
Confidence 4455 45566799999999999999998777775 44578888999996544
No 333
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=90.92 E-value=1.1 Score=36.14 Aligned_cols=50 Identities=10% Similarity=0.007 Sum_probs=39.3
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI 189 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~ 189 (193)
++++|+. .++|+.|.++...++.+|.+++++.. ++.+.+.++.+|+..++
T Consensus 50 ~~~~vv~-aSsGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~l~~~GA~v~~ 102 (316)
T cd06448 50 ECVHVVC-SSGGNAGLAAAYAARKLGVPCTIVVPESTKPRVVEKLRDEGATVVV 102 (316)
T ss_pred cCCeEEE-eCCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEE
Confidence 4555555 45699999999999999998887776 45678888999997554
No 334
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=90.85 E-value=1.1 Score=37.15 Aligned_cols=34 Identities=24% Similarity=0.124 Sum_probs=27.8
Q ss_pred CCCCeEEEEcCCchHHHH--HHHHHHHCCCEEEEEeC
Q 029425 138 SPGESFLVHGGSSGIGTF--AIQMGKCQGVRVFVTAG 172 (193)
Q Consensus 138 ~~~~~vli~ga~g~~G~~--~i~~~~~~g~~v~~~~~ 172 (193)
..++++||+|+++++|.+ ..+.+ ..|++++++..
T Consensus 39 ~ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~~ 74 (398)
T PRK13656 39 NGPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVFF 74 (398)
T ss_pred CCCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEec
Confidence 456899999999999999 45555 78999888773
No 335
>PRK14031 glutamate dehydrogenase; Provisional
Probab=90.85 E-value=1.3 Score=37.29 Aligned_cols=33 Identities=18% Similarity=0.298 Sum_probs=30.2
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG 172 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~ 172 (193)
.|.+|+|.|. |.+|..+++.+..+|++|+++..
T Consensus 227 ~g~rVaVQGf-GNVG~~aA~~L~e~GAkVVaVSD 259 (444)
T PRK14031 227 KGKVCLVSGS-GNVAQYTAEKVLELGGKVVTMSD 259 (444)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEEC
Confidence 6889999997 99999999999999999998664
No 336
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=90.68 E-value=1.7 Score=33.86 Aligned_cols=34 Identities=15% Similarity=0.264 Sum_probs=30.1
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC
Q 029425 138 SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG 172 (193)
Q Consensus 138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~ 172 (193)
-+|.++.|.|- |.+|+.+++++..+|++|+.+..
T Consensus 36 l~g~~vaIqGf-GnVG~~~a~~L~e~GakvvaVsD 69 (254)
T cd05313 36 LKGKRVAISGS-GNVAQYAAEKLLELGAKVVTLSD 69 (254)
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEEC
Confidence 35789999996 99999999999999999996654
No 337
>PRK07476 eutB threonine dehydratase; Provisional
Probab=90.48 E-value=1.5 Score=35.35 Aligned_cols=46 Identities=15% Similarity=0.202 Sum_probs=37.5
Q ss_pred EEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425 144 LVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI 189 (193)
Q Consensus 144 li~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~ 189 (193)
+|...+|+.|.++..+++.+|++++++.. ++.|...++.+|+..++
T Consensus 70 vv~aSsGN~g~alA~~a~~~G~~~~i~vp~~~~~~k~~~~~~~GA~V~~ 118 (322)
T PRK07476 70 VVTASTGNHGRALAYAARALGIRATICMSRLVPANKVDAIRALGAEVRI 118 (322)
T ss_pred EEEECCChHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHcCCEEEE
Confidence 55567899999999999999998887776 34577888999997554
No 338
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=90.46 E-value=2.8 Score=31.87 Aligned_cols=35 Identities=17% Similarity=0.139 Sum_probs=29.4
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA 174 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~ 174 (193)
.+.++.|.|- |.+|..+++.+..+|++++.+..+.
T Consensus 22 ~g~~vaIqGf-GnVG~~~a~~L~~~G~~vV~vsD~~ 56 (217)
T cd05211 22 EGLTVAVQGL-GNVGWGLAKKLAEEGGKVLAVSDPD 56 (217)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEEcCC
Confidence 5789999996 9999999999999999766555443
No 339
>PLN02928 oxidoreductase family protein
Probab=90.45 E-value=0.63 Score=38.00 Aligned_cols=34 Identities=21% Similarity=0.239 Sum_probs=31.3
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGL 173 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~ 173 (193)
.|.++.|+|- |.+|..+++.++.+|++|+...++
T Consensus 158 ~gktvGIiG~-G~IG~~vA~~l~afG~~V~~~dr~ 191 (347)
T PLN02928 158 FGKTVFILGY-GAIGIELAKRLRPFGVKLLATRRS 191 (347)
T ss_pred CCCEEEEECC-CHHHHHHHHHHhhCCCEEEEECCC
Confidence 4789999996 999999999999999999999876
No 340
>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family. This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase).
Probab=90.43 E-value=0.95 Score=37.38 Aligned_cols=50 Identities=12% Similarity=0.053 Sum_probs=40.2
Q ss_pred CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425 140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI 189 (193)
Q Consensus 140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~ 189 (193)
+...+|...+|+.|+++...++.+|++.+++.. +..|.+.++.+|+..++
T Consensus 93 ~~~~vv~aSsGN~g~a~A~~Aa~~G~~~~I~vP~~~~~~k~~~i~~~GAeVi~ 145 (376)
T TIGR01747 93 GQATFATATDGNHGRGVAWAAQQLGQKAVVYMPKGSAQERVENILNLGAECTI 145 (376)
T ss_pred CCCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEE
Confidence 355677788899999999999999998777766 34578888899996554
No 341
>PRK13984 putative oxidoreductase; Provisional
Probab=90.37 E-value=0.97 Score=39.66 Aligned_cols=53 Identities=13% Similarity=0.206 Sum_probs=41.4
Q ss_pred CCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc---------------------hHHHHhhcCCcEEec
Q 029425 137 LSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT---------------------RFILCQPFNIRVFIG 190 (193)
Q Consensus 137 ~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~---------------------~~~~~~~~G~~~~~~ 190 (193)
.+++++++|.|+ |..|+.++..++..|.+|.++.+.+. ..+.++++|++..+|
T Consensus 280 ~~~~~~v~IIGa-G~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~~ 353 (604)
T PRK13984 280 EKKNKKVAIVGS-GPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHLN 353 (604)
T ss_pred ccCCCeEEEECC-CHHHHHHHHHHHHCCCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEECC
Confidence 356889999996 99999999999999999998876431 235567788766554
No 342
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=90.36 E-value=1.1 Score=39.85 Aligned_cols=37 Identities=16% Similarity=0.115 Sum_probs=32.2
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425 138 SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT 175 (193)
Q Consensus 138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~ 175 (193)
..+++|+|+|+ |..|+.++..+...|.+|+++.+++.
T Consensus 191 ~~~k~VaIIGa-GpAGl~aA~~La~~G~~Vtv~e~~~~ 227 (652)
T PRK12814 191 KSGKKVAIIGA-GPAGLTAAYYLLRKGHDVTIFDANEQ 227 (652)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 35689999997 99999999999999999999987643
No 343
>PRK13243 glyoxylate reductase; Reviewed
Probab=90.35 E-value=0.91 Score=36.84 Aligned_cols=37 Identities=19% Similarity=0.213 Sum_probs=32.6
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcch
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATR 176 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~ 176 (193)
.|+++.|+|- |.+|...++.++.+|++|++..++.+.
T Consensus 149 ~gktvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~~ 185 (333)
T PRK13243 149 YGKTIGIIGF-GRIGQAVARRAKGFGMRILYYSRTRKP 185 (333)
T ss_pred CCCEEEEECc-CHHHHHHHHHHHHCCCEEEEECCCCCh
Confidence 4689999996 999999999999999999999876543
No 344
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=90.29 E-value=0.87 Score=36.83 Aligned_cols=36 Identities=19% Similarity=0.195 Sum_probs=32.9
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT 175 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~ 175 (193)
.|+++.|.|- |.+|++..+.++.+|++|+...++..
T Consensus 145 ~gktvGIiG~-GrIG~avA~r~~~Fgm~v~y~~~~~~ 180 (324)
T COG1052 145 RGKTLGIIGL-GRIGQAVARRLKGFGMKVLYYDRSPN 180 (324)
T ss_pred CCCEEEEECC-CHHHHHHHHHHhcCCCEEEEECCCCC
Confidence 4789999996 99999999999999999999998865
No 345
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=90.29 E-value=1.9 Score=35.53 Aligned_cols=47 Identities=9% Similarity=0.118 Sum_probs=37.8
Q ss_pred EEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425 143 FLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI 189 (193)
Q Consensus 143 vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~ 189 (193)
-+|..++|+.|+++...++.+|++.+++.. +..|.+.++.+|+..++
T Consensus 50 ~vv~aSsGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~ 99 (380)
T TIGR01127 50 GVVAASAGNHAQGVAYAAKKFGIKAVIVMPESAPPSKVKATKSYGAEVIL 99 (380)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCcHHHHHHHHHCCCEEEE
Confidence 355566799999999999999998777765 44678888999997655
No 346
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=90.26 E-value=0.96 Score=40.17 Aligned_cols=53 Identities=17% Similarity=0.232 Sum_probs=38.0
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEE-EEEeCCc--ch-HHHHhhcCCcEEecC
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRV-FVTAGLA--TR-FILCQPFNIRVFIGF 191 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v-~~~~~~~--~~-~~~~~~~G~~~~~~~ 191 (193)
+..+|||+|++|.+|..++..+...|.+| +...+-. +. ...+++.+.|.|||.
T Consensus 379 ~~mkiLVtGa~G~iG~~l~~~L~~~g~~v~~~~~~l~d~~~v~~~i~~~~pd~Vih~ 435 (668)
T PLN02260 379 PSLKFLIYGRTGWIGGLLGKLCEKQGIAYEYGKGRLEDRSSLLADIRNVKPTHVFNA 435 (668)
T ss_pred CCceEEEECCCchHHHHHHHHHHhCCCeEEeeccccccHHHHHHHHHhhCCCEEEEC
Confidence 44589999999999999999999889888 3333211 12 233455688988864
No 347
>PRK06721 threonine synthase; Reviewed
Probab=90.21 E-value=1.3 Score=36.18 Aligned_cols=50 Identities=6% Similarity=0.165 Sum_probs=39.5
Q ss_pred CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC----cchHHHHhhcCCcEEe
Q 029425 140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGL----ATRFILCQPFNIRVFI 189 (193)
Q Consensus 140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~----~~~~~~~~~~G~~~~~ 189 (193)
|...+|...+|+.|.++..+++.+|.+++++... +.|...++.+|+..++
T Consensus 74 g~~~vV~aSsGN~G~alA~~aa~~G~~~~vvvp~~~~~~~k~~~~~~~GA~V~~ 127 (352)
T PRK06721 74 GSEAIICASTGNTSASAAAYAARLGMKCIIVIPEGKIAHGKLAQAVAYGAEIIS 127 (352)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCHHHHHHHHHcCCEEEE
Confidence 3455666778999999999999999988877753 3477788899997654
No 348
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=90.14 E-value=2 Score=32.29 Aligned_cols=35 Identities=23% Similarity=0.256 Sum_probs=30.6
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA 174 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~ 174 (193)
.|.+|+|.|+ |.+|..-++.+...|++|+++....
T Consensus 8 ~gk~vlVvGg-G~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 8 EGRAVLVVGG-GDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred CCCeEEEECc-CHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 3679999998 9999999999999999999887644
No 349
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.13 E-value=1.2 Score=37.89 Aligned_cols=47 Identities=19% Similarity=0.037 Sum_probs=36.7
Q ss_pred CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHH-HhhcCCcE
Q 029425 140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFIL-CQPFNIRV 187 (193)
Q Consensus 140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~-~~~~G~~~ 187 (193)
+.+++|.|. |..|.+++.+++..|++|++.++...+... ++++|+..
T Consensus 15 ~~~v~v~G~-G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~ 62 (473)
T PRK00141 15 SGRVLVAGA-GVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVAD 62 (473)
T ss_pred CCeEEEEcc-CHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEE
Confidence 457999997 999999999999999999999976554433 35567633
No 350
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.07 E-value=3.3 Score=32.89 Aligned_cols=56 Identities=16% Similarity=0.047 Sum_probs=39.4
Q ss_pred CcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425 120 FPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT 175 (193)
Q Consensus 120 ~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~ 175 (193)
+|+.....+..|....---.|.+++|.|.+..+|.-+..++...|++|++.-....
T Consensus 138 ~PcTp~aii~lL~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t~ 193 (285)
T PRK14189 138 RPCTPYGVMKMLESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKTR 193 (285)
T ss_pred cCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCCCC
Confidence 34444444444432222236899999999888899999999999999988765443
No 351
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=90.07 E-value=0.61 Score=35.70 Aligned_cols=45 Identities=11% Similarity=0.218 Sum_probs=39.0
Q ss_pred CCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHh
Q 029425 136 HLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQ 181 (193)
Q Consensus 136 ~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~ 181 (193)
+..+-..|-|.|+ |.+|.-..|++...|..|.+++++++.+..++
T Consensus 7 ~~~~~~~V~ivGa-G~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~ 51 (298)
T KOG2304|consen 7 NMAEIKNVAIVGA-GQMGSGIAQVAATSGLNVWLVDANEDALSRAT 51 (298)
T ss_pred ccccccceEEEcc-cccchhHHHHHHhcCCceEEecCCHHHHHHHH
Confidence 3455578999998 99999999999999999999999999887664
No 352
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.94 E-value=4 Score=32.61 Aligned_cols=68 Identities=13% Similarity=0.094 Sum_probs=45.0
Q ss_pred CcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEe-CCcchHHHHhhcCCcEEe
Q 029425 120 FPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTA-GLATRFILCQPFNIRVFI 189 (193)
Q Consensus 120 ~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~-~~~~~~~~~~~~G~~~~~ 189 (193)
+|+.....+..|....---.|+++.|+|-++.+|.-.+.++...|+.|++.. ++.+-.+.++ .+|.++
T Consensus 138 ~PcTp~ai~~ll~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~~l~e~~~--~ADIVI 206 (296)
T PRK14188 138 VPCTPLGCMMLLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTRDLPAVCR--RADILV 206 (296)
T ss_pred cCCCHHHHHHHHHHhCCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCCCHHHHHh--cCCEEE
Confidence 4444444554443322224689999999889999999999999999999984 5543323332 345544
No 353
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=89.76 E-value=1.9 Score=34.67 Aligned_cols=46 Identities=15% Similarity=0.138 Sum_probs=37.6
Q ss_pred EEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425 144 LVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI 189 (193)
Q Consensus 144 li~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~ 189 (193)
+|...+|+.|.++...++.+|.+++++.. ++.|.+.++.+|+..++
T Consensus 70 vv~aSsGN~g~alA~~a~~~G~~~~v~~p~~~~~~k~~~~~~~GA~V~~ 118 (317)
T TIGR02991 70 VVAASTGNHGRALAYAAAEEGVRATICMSELVPQNKVDEIRRLGAEVRI 118 (317)
T ss_pred EEEECCCHHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHcCCEEEE
Confidence 56677899999999999999998877766 34578888999996554
No 354
>PLN00016 RNA-binding protein; Provisional
Probab=89.76 E-value=0.58 Score=38.44 Aligned_cols=37 Identities=19% Similarity=0.144 Sum_probs=33.0
Q ss_pred CCeEEEE----cCCchHHHHHHHHHHHCCCEEEEEeCCcch
Q 029425 140 GESFLVH----GGSSGIGTFAIQMGKCQGVRVFVTAGLATR 176 (193)
Q Consensus 140 ~~~vli~----ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~ 176 (193)
..+|||+ |++|.+|..++..+...|.+|++++++..+
T Consensus 52 ~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~ 92 (378)
T PLN00016 52 KKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEP 92 (378)
T ss_pred cceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcc
Confidence 3679999 999999999999999999999999987653
No 355
>PRK07409 threonine synthase; Validated
Probab=89.69 E-value=1.9 Score=35.16 Aligned_cols=48 Identities=8% Similarity=0.142 Sum_probs=37.8
Q ss_pred eEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC----cchHHHHhhcCCcEEe
Q 029425 142 SFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGL----ATRFILCQPFNIRVFI 189 (193)
Q Consensus 142 ~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~----~~~~~~~~~~G~~~~~ 189 (193)
..+|...+|+.|.++...++.+|.+++++... ..|.+.++.+|+..++
T Consensus 79 ~~iv~aSsGN~g~alA~~a~~~G~~~~ivvP~~~~~~~k~~~~~~~GA~Vi~ 130 (353)
T PRK07409 79 KAVICASTGNTSASAAAYAARAGLKAFVLIPEGKIALGKLAQAVMYGAEIIQ 130 (353)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEcCCCCchhhHHHHHhcCCEEEE
Confidence 45666788999999999999999987766653 3577788899996554
No 356
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=89.69 E-value=1.2 Score=35.91 Aligned_cols=49 Identities=6% Similarity=0.084 Sum_probs=38.4
Q ss_pred CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425 140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI 189 (193)
Q Consensus 140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~ 189 (193)
+++| |...+|+.|.++...++.+|.+++++.. +..+.+.++.+|+..++
T Consensus 70 ~~~v-v~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~l~~~GA~Vi~ 121 (324)
T cd01563 70 VKAV-ACASTGNTSASLAAYAARAGIKCVVFLPAGKALGKLAQALAYGATVLA 121 (324)
T ss_pred CCEE-EEeCCCHHHHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHcCCEEEE
Confidence 4444 5556799999999999999998887776 45677888999996554
No 357
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=89.66 E-value=1.3 Score=32.89 Aligned_cols=47 Identities=17% Similarity=0.230 Sum_probs=38.5
Q ss_pred HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCC--CEEEEEeCCcchHHHHh
Q 029425 133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQG--VRVFVTAGLATRFILCQ 181 (193)
Q Consensus 133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g--~~v~~~~~~~~~~~~~~ 181 (193)
....+.++++++-.|+ |. |..++.+++..+ .+|+.++.+++..+.++
T Consensus 34 ~~l~~~~~~~vlDlG~-Gt-G~~s~~~a~~~~~~~~v~avD~~~~~~~~a~ 82 (198)
T PRK00377 34 SKLRLRKGDMILDIGC-GT-GSVTVEASLLVGETGKVYAVDKDEKAINLTR 82 (198)
T ss_pred HHcCCCCcCEEEEeCC-cC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHH
Confidence 3457889999999997 66 999999988764 58999999988887664
No 358
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.59 E-value=1.4 Score=37.27 Aligned_cols=47 Identities=11% Similarity=-0.026 Sum_probs=36.9
Q ss_pred CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc-----hHHHHhhcCCcE
Q 029425 140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT-----RFILCQPFNIRV 187 (193)
Q Consensus 140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~-----~~~~~~~~G~~~ 187 (193)
+.+|+|+|. |..|++++++++..|++|.+.+.++. ..+.+++.|...
T Consensus 14 ~~~i~v~G~-G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~ 65 (458)
T PRK01710 14 NKKVAVVGI-GVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKL 65 (458)
T ss_pred CCeEEEEcc-cHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEE
Confidence 578999997 99999999999999999999997642 113456666543
No 359
>PRK06300 enoyl-(acyl carrier protein) reductase; Provisional
Probab=89.56 E-value=1.1 Score=35.67 Aligned_cols=34 Identities=18% Similarity=0.162 Sum_probs=30.0
Q ss_pred CCCeEEEEcCC--chHHHHHHHHHHHCCCEEEEEeC
Q 029425 139 PGESFLVHGGS--SGIGTFAIQMGKCQGVRVFVTAG 172 (193)
Q Consensus 139 ~~~~vli~ga~--g~~G~~~i~~~~~~g~~v~~~~~ 172 (193)
.|++++|+|+. +++|.+.+..+.+.|++|++..+
T Consensus 7 ~gk~alITGa~~~~GIG~a~A~~la~~Ga~Vvv~~~ 42 (299)
T PRK06300 7 TGKIAFIAGIGDDQGYGWGIAKALAEAGATILVGTW 42 (299)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCCEEEEEec
Confidence 57899999994 89999999999999999999653
No 360
>PRK14030 glutamate dehydrogenase; Provisional
Probab=89.56 E-value=2 Score=36.31 Aligned_cols=31 Identities=16% Similarity=0.175 Sum_probs=28.7
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEE
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVT 170 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~ 170 (193)
.|.+|.|.|- |.+|..+++.+..+|++|+++
T Consensus 227 ~g~~vaIQGf-GnVG~~aA~~L~e~GakvVav 257 (445)
T PRK14030 227 KGKTVAISGF-GNVAWGAATKATELGAKVVTI 257 (445)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEE
Confidence 5889999996 999999999999999999984
No 361
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=89.55 E-value=4.5 Score=28.51 Aligned_cols=38 Identities=21% Similarity=0.186 Sum_probs=33.4
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425 138 SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT 175 (193)
Q Consensus 138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~ 175 (193)
=.|++++|+|.+..+|.-+..++...|++|+...+...
T Consensus 26 ~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~ 63 (140)
T cd05212 26 LDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTI 63 (140)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCc
Confidence 36899999999999999999999999999998875443
No 362
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=89.43 E-value=1.6 Score=36.88 Aligned_cols=51 Identities=14% Similarity=0.163 Sum_probs=39.3
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc--------chHHHHhhcCCcEEe
Q 029425 138 SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA--------TRFILCQPFNIRVFI 189 (193)
Q Consensus 138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~--------~~~~~~~~~G~~~~~ 189 (193)
..+++++|+|+ |.+|.-++..+..+|++|.++.+.. ...+.+++.|.....
T Consensus 270 ~~gk~VvVIGg-G~~a~d~A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~l~~~GV~~~~ 328 (449)
T TIGR01316 270 YAGKSVVVIGG-GNTAVDSARTALRLGAEVHCLYRRTREDMTARVEEIAHAEEEGVKFHF 328 (449)
T ss_pred cCCCeEEEECC-CHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHhCCCEEEe
Confidence 46789999998 9999999999999999998887643 122456677775443
No 363
>PRK08197 threonine synthase; Validated
Probab=89.33 E-value=1.5 Score=36.46 Aligned_cols=50 Identities=12% Similarity=0.165 Sum_probs=40.1
Q ss_pred CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425 140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI 189 (193)
Q Consensus 140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~ 189 (193)
|...+|..++|+.|.++..+++..|.++++++. ++.+...++.+|+..+.
T Consensus 126 g~~~vv~aSsGN~g~alA~~aa~~G~~~~v~vp~~~~~~k~~~~~~~GA~Vi~ 178 (394)
T PRK08197 126 GVKHLAMPTNGNAGAAWAAYAARAGIRATIFMPADAPEITRLECALAGAELYL 178 (394)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEE
Confidence 345567678899999999999999998887774 55678888899996543
No 364
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=89.14 E-value=0.89 Score=36.77 Aligned_cols=32 Identities=22% Similarity=0.206 Sum_probs=30.7
Q ss_pred CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC
Q 029425 140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG 172 (193)
Q Consensus 140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~ 172 (193)
|+|+.|+|. |.+|..+++.++.+|++|+..++
T Consensus 142 gkTvGIiG~-G~IG~~va~~l~afgm~v~~~d~ 173 (324)
T COG0111 142 GKTVGIIGL-GRIGRAVAKRLKAFGMKVIGYDP 173 (324)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCeEEEECC
Confidence 789999997 99999999999999999999998
No 365
>PRK05638 threonine synthase; Validated
Probab=89.14 E-value=1.4 Score=37.12 Aligned_cols=50 Identities=10% Similarity=0.135 Sum_probs=39.6
Q ss_pred CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425 140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI 189 (193)
Q Consensus 140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~ 189 (193)
+...+|..++|+.|.++..+++.+|.++++++. +..|...++.+|+..+.
T Consensus 111 g~~~vv~aSsGN~g~alA~~aa~~G~~~~i~vp~~~~~~k~~~~~~~GA~vi~ 163 (442)
T PRK05638 111 AANGFIVASDGNAAASVAAYSARAGKEAFVVVPRKVDKGKLIQMIAFGAKIIR 163 (442)
T ss_pred CCCEEEEeCCChHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHhcCcEEEE
Confidence 344556678899999999999999998877776 34677888899997654
No 366
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.10 E-value=4.9 Score=32.17 Aligned_cols=56 Identities=18% Similarity=0.027 Sum_probs=40.4
Q ss_pred CcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425 120 FPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT 175 (193)
Q Consensus 120 ~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~ 175 (193)
+|+.....+..|....--=.|+++.|+|.++.+|.-...++...|++|++..+...
T Consensus 139 ~PcTp~aii~lL~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~ 194 (301)
T PRK14194 139 TPCTPSGCLRLLEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRST 194 (301)
T ss_pred CCCcHHHHHHHHHHhCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCC
Confidence 44544444444433322236899999998779999999999999999999965544
No 367
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=89.04 E-value=0.92 Score=37.80 Aligned_cols=36 Identities=22% Similarity=0.385 Sum_probs=31.8
Q ss_pred CCCeEEEEcC----------------CchHHHHHHHHHHHCCCEEEEEeCCc
Q 029425 139 PGESFLVHGG----------------SSGIGTFAIQMGKCQGVRVFVTAGLA 174 (193)
Q Consensus 139 ~~~~vli~ga----------------~g~~G~~~i~~~~~~g~~v~~~~~~~ 174 (193)
.|.+++|+|+ +|.+|.+.++.+...|++|+++.++.
T Consensus 187 ~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~~~~ 238 (399)
T PRK05579 187 AGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVSGPV 238 (399)
T ss_pred CCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeCCCc
Confidence 6789999998 67799999999999999999887653
No 368
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=89.03 E-value=1.7 Score=36.87 Aligned_cols=35 Identities=23% Similarity=0.172 Sum_probs=30.9
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC
Q 029425 138 SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGL 173 (193)
Q Consensus 138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~ 173 (193)
+.+.+++|+|+ |..|+.++..++..|.+|+++.+.
T Consensus 141 ~~~~~VvIIGa-GpAGl~aA~~l~~~G~~V~vie~~ 175 (471)
T PRK12810 141 RTGKKVAVVGS-GPAGLAAADQLARAGHKVTVFERA 175 (471)
T ss_pred CCCCEEEEECc-CHHHHHHHHHHHhCCCcEEEEecC
Confidence 45679999998 999999999999999999998864
No 369
>PRK12831 putative oxidoreductase; Provisional
Probab=88.95 E-value=1.8 Score=36.76 Aligned_cols=50 Identities=14% Similarity=0.157 Sum_probs=38.0
Q ss_pred CCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc--------chHHHHhhcCCcE
Q 029425 137 LSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA--------TRFILCQPFNIRV 187 (193)
Q Consensus 137 ~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~--------~~~~~~~~~G~~~ 187 (193)
...+++++|+|+ |.+|.-++..+..+|++|.++.+.. +..+.+++.|...
T Consensus 278 ~~~gk~VvVIGg-G~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a~~~e~~~a~~eGV~i 335 (464)
T PRK12831 278 IKVGKKVAVVGG-GNVAMDAARTALRLGAEVHIVYRRSEEELPARVEEVHHAKEEGVIF 335 (464)
T ss_pred ccCCCeEEEECC-cHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHHcCCEE
Confidence 357899999998 9999999999999999998887643 1223455667643
No 370
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=88.89 E-value=1.6 Score=37.26 Aligned_cols=35 Identities=23% Similarity=0.141 Sum_probs=30.6
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC
Q 029425 138 SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGL 173 (193)
Q Consensus 138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~ 173 (193)
+.+.+++|.|+ |..|+.++..++..|.+|+++.+.
T Consensus 141 ~~~~~V~IIGa-G~aGl~aA~~L~~~g~~V~v~e~~ 175 (485)
T TIGR01317 141 RTGKKVAVVGS-GPAGLAAADQLNRAGHTVTVFERE 175 (485)
T ss_pred CCCCEEEEECC-cHHHHHHHHHHHHcCCeEEEEecC
Confidence 35689999998 999999999999999999988754
No 371
>PRK08329 threonine synthase; Validated
Probab=88.88 E-value=1.6 Score=35.67 Aligned_cols=48 Identities=13% Similarity=0.131 Sum_probs=38.0
Q ss_pred eEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425 142 SFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI 189 (193)
Q Consensus 142 ~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~ 189 (193)
..+|..++|+.|.++..+++..|.++++++. +..|+..++.+|++.++
T Consensus 105 ~~vv~aSsGN~g~alA~~aa~~G~~~~v~vp~~~~~~k~~~~~~~GA~v~~ 155 (347)
T PRK08329 105 NEVVIDSSGNAALSLALYSLSEGIKVHVFVSYNASKEKISLLSRLGAELHF 155 (347)
T ss_pred CEEEEECCCcHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEE
Confidence 3455566799999999999999998887775 34578888899996554
No 372
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=88.88 E-value=2.1 Score=26.82 Aligned_cols=37 Identities=19% Similarity=0.234 Sum_probs=21.8
Q ss_pred cCCCCCCeEEEEcCCchHHHHHH-HHHHHCCCEEEEEe
Q 029425 135 SHLSPGESFLVHGGSSGIGTFAI-QMGKCQGVRVFVTA 171 (193)
Q Consensus 135 ~~~~~~~~vli~ga~g~~G~~~i-~~~~~~g~~v~~~~ 171 (193)
..++..+++||+|++++.|++.- .++-..|++.+.+.
T Consensus 34 ~~~~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~ 71 (78)
T PF12242_consen 34 GKINGPKKVLVIGASTGYGLASRIAAAFGAGADTIGVS 71 (78)
T ss_dssp ---TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE
T ss_pred CCCCCCceEEEEecCCcccHHHHHHHHhcCCCCEEEEe
Confidence 34444489999999999998753 33335677777664
No 373
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=88.84 E-value=0.93 Score=36.42 Aligned_cols=35 Identities=17% Similarity=0.267 Sum_probs=31.5
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA 174 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~ 174 (193)
.|+++.|.|- |.+|..+++.++.+|++|+...++.
T Consensus 144 ~gktvGIiG~-G~IG~~vA~~~~~fgm~V~~~d~~~ 178 (311)
T PRK08410 144 KGKKWGIIGL-GTIGKRVAKIAQAFGAKVVYYSTSG 178 (311)
T ss_pred CCCEEEEECC-CHHHHHHHHHHhhcCCEEEEECCCc
Confidence 5789999996 9999999999999999999998753
No 374
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=88.81 E-value=1.2 Score=33.46 Aligned_cols=35 Identities=11% Similarity=0.102 Sum_probs=30.1
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA 174 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~ 174 (193)
.+.+|+|.|+ |.+|...+..+...|++|+++.+..
T Consensus 9 ~~k~vLVIGg-G~va~~ka~~Ll~~ga~V~VIs~~~ 43 (202)
T PRK06718 9 SNKRVVIVGG-GKVAGRRAITLLKYGAHIVVISPEL 43 (202)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 4678999998 9999999999989999999887643
No 375
>PLN00203 glutamyl-tRNA reductase
Probab=88.46 E-value=1.2 Score=38.35 Aligned_cols=42 Identities=17% Similarity=0.271 Sum_probs=36.8
Q ss_pred CCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHhh
Q 029425 140 GESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQP 182 (193)
Q Consensus 140 ~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~~ 182 (193)
+.+++|+|+ |.+|.++++.+...|+ +|+++.++.++.+.+.+
T Consensus 266 ~kkVlVIGA-G~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~ 308 (519)
T PLN00203 266 SARVLVIGA-GKMGKLLVKHLVSKGCTKMVVVNRSEERVAALRE 308 (519)
T ss_pred CCEEEEEeC-HHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHH
Confidence 678999998 9999999999999997 79999999888776653
No 376
>PRK06815 hypothetical protein; Provisional
Probab=88.44 E-value=1.6 Score=35.06 Aligned_cols=46 Identities=20% Similarity=0.177 Sum_probs=37.2
Q ss_pred EEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425 144 LVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI 189 (193)
Q Consensus 144 li~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~ 189 (193)
+|..++|+.|.++..+++.+|++++++.. ++.+...++.+|+..+.
T Consensus 71 vv~aSsGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~V~~ 119 (317)
T PRK06815 71 VITASSGNHGQGVALAAKLAGIPVTVYAPEQASAIKLDAIRALGAEVRL 119 (317)
T ss_pred EEEECCChHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEE
Confidence 56677899999999999999998777776 34577888899996554
No 377
>PRK07591 threonine synthase; Validated
Probab=88.43 E-value=1.5 Score=36.84 Aligned_cols=48 Identities=6% Similarity=0.041 Sum_probs=38.6
Q ss_pred eEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425 142 SFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI 189 (193)
Q Consensus 142 ~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~ 189 (193)
..++.+++|+.|.++..+++.+|.+.++++. +..|...++.+|+..+.
T Consensus 138 ~~vv~aSsGN~g~alA~~aa~~Gl~~~I~vP~~~~~~k~~~~~~~GA~Vi~ 188 (421)
T PRK07591 138 TTVACASTGNLANSVAAHAARAGLDSCVFIPADLEAGKIVGTLVYGPTLVA 188 (421)
T ss_pred CEEEEeCCCHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEE
Confidence 3456778899999999999999998777775 34678888899996554
No 378
>PRK06352 threonine synthase; Validated
Probab=88.32 E-value=2 Score=35.06 Aligned_cols=48 Identities=4% Similarity=0.150 Sum_probs=37.7
Q ss_pred eEEEEcCCchHHHHHHHHHHHCCCEEEEEeC----CcchHHHHhhcCCcEEe
Q 029425 142 SFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG----LATRFILCQPFNIRVFI 189 (193)
Q Consensus 142 ~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~----~~~~~~~~~~~G~~~~~ 189 (193)
..+|...+|+.|.++..+++.+|.+++++.. +.+|...++.+|+..++
T Consensus 76 ~~vV~aSsGN~G~AlA~~aa~~G~~~~ivvp~~~~~~~k~~~~~a~GA~V~~ 127 (351)
T PRK06352 76 EAVICASTGNTSAAAAAYATRAGLKAYIVIPEGKVALGKLAQAVMYGADIIS 127 (351)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCcEEEEEeCCCCcHHHHHHHHhcCCEEEE
Confidence 3466667899999999999999998776663 34577888899997554
No 379
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.
Probab=88.17 E-value=1.9 Score=35.92 Aligned_cols=47 Identities=13% Similarity=-0.001 Sum_probs=38.5
Q ss_pred EEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425 143 FLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI 189 (193)
Q Consensus 143 vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~ 189 (193)
.+|..++|+.|+++...++.+|++.+++.. +..|.+.++.+|+..++
T Consensus 115 ~vv~aSsGN~g~alA~~aa~~Gi~~~IvvP~~~~~~K~~~ir~~GAeVi~ 164 (396)
T TIGR03528 115 TFVTATDGNHGRGVAWAANQLGQKSVVYMPKGSAQIRLENIRAEGAECTI 164 (396)
T ss_pred EEEEECccHHHHHHHHHHHHcCCCEEEEEeCCCcHHHHHHHHhcCCEEEE
Confidence 577788899999999999999998777665 34578888999996554
No 380
>PRK09224 threonine dehydratase; Reviewed
Probab=88.16 E-value=2.4 Score=36.50 Aligned_cols=47 Identities=6% Similarity=0.054 Sum_probs=37.6
Q ss_pred EEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425 143 FLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI 189 (193)
Q Consensus 143 vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~ 189 (193)
-+|..++|+.|+++...++.+|++.+++.. +..|.+.++.+|+..++
T Consensus 70 gvV~aSaGNha~avA~aa~~lGi~~~IvmP~~tp~~K~~~~r~~GA~Vi~ 119 (504)
T PRK09224 70 GVITASAGNHAQGVALSAARLGIKAVIVMPVTTPDIKVDAVRAFGGEVVL 119 (504)
T ss_pred EEEEECcCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEE
Confidence 356666799999999999999998777765 34577788999997655
No 381
>PLN02569 threonine synthase
Probab=88.12 E-value=4.5 Score=34.68 Aligned_cols=47 Identities=6% Similarity=-0.048 Sum_probs=37.9
Q ss_pred eEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc----chHHHHhhcCCcEE
Q 029425 142 SFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA----TRFILCQPFNIRVF 188 (193)
Q Consensus 142 ~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~----~~~~~~~~~G~~~~ 188 (193)
..++..++|+.|.++..+++..|.++++++... .|+..++.+|+..+
T Consensus 188 ~~Vv~ASSGN~GaAlAayaa~~Gl~~~I~vP~~~~~~~k~~qi~a~GA~Vi 238 (484)
T PLN02569 188 VGVGCASTGDTSAALSAYCAAAGIPSIVFLPADKISIAQLVQPIANGALVL 238 (484)
T ss_pred cEEEEeCCcHHHHHHHHHHHhcCCeEEEEEcCCCCCHHHHHHHHhcCCEEE
Confidence 345667789999999999999999888777643 58888889998644
No 382
>TIGR00260 thrC threonine synthase. Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.
Probab=88.03 E-value=1.5 Score=35.26 Aligned_cols=50 Identities=16% Similarity=0.244 Sum_probs=38.9
Q ss_pred CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc----chHHHHhhcCCcEEe
Q 029425 140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA----TRFILCQPFNIRVFI 189 (193)
Q Consensus 140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~----~~~~~~~~~G~~~~~ 189 (193)
+...+|...+|+.|.++..+++.+|.+++++.... +++...+.+|+..+.
T Consensus 70 g~~~vv~aSsGN~g~a~A~~a~~~g~~~~v~~p~~~~s~~k~~~~~~~GA~Vi~ 123 (328)
T TIGR00260 70 GNDTVLCASTGNTGAAAAAYAGKAGVKVVILYPAGKISLGKLAQALGYNAEVVA 123 (328)
T ss_pred CCCEEEEeCCcHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHhcCcEEEE
Confidence 34467778889999999999999999888777643 466777789986553
No 383
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=88.02 E-value=3.8 Score=34.27 Aligned_cols=46 Identities=15% Similarity=0.207 Sum_probs=39.5
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHH-hhcCC
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILC-QPFNI 185 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~-~~~G~ 185 (193)
.+.++||+|+ |-+|..++..+...|. ++++..|+.++.+.+ +++|+
T Consensus 177 ~~~~vlvIGA-Gem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~ 224 (414)
T COG0373 177 KDKKVLVIGA-GEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGA 224 (414)
T ss_pred ccCeEEEEcc-cHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCC
Confidence 6788999998 9999999999999996 899999999888655 56884
No 384
>PRK06436 glycerate dehydrogenase; Provisional
Probab=87.96 E-value=1.2 Score=35.66 Aligned_cols=34 Identities=21% Similarity=0.303 Sum_probs=31.1
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGL 173 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~ 173 (193)
.|.++.|+|- |.+|...++.++.+|++|+...++
T Consensus 121 ~gktvgIiG~-G~IG~~vA~~l~afG~~V~~~~r~ 154 (303)
T PRK06436 121 YNKSLGILGY-GGIGRRVALLAKAFGMNIYAYTRS 154 (303)
T ss_pred CCCEEEEECc-CHHHHHHHHHHHHCCCEEEEECCC
Confidence 4789999996 999999999999999999999875
No 385
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=87.96 E-value=2 Score=36.09 Aligned_cols=44 Identities=18% Similarity=0.212 Sum_probs=39.2
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhc
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPF 183 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~ 183 (193)
...+++|.|. |.+|..+++.+...|.++++++.++++.+.+++.
T Consensus 230 ~~~~iiIiG~-G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~ 273 (453)
T PRK09496 230 PVKRVMIVGG-GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEE 273 (453)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHH
Confidence 4678999997 9999999999999999999999999988887764
No 386
>PRK06382 threonine dehydratase; Provisional
Probab=87.93 E-value=3 Score=34.81 Aligned_cols=47 Identities=4% Similarity=0.143 Sum_probs=37.3
Q ss_pred EEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEec
Q 029425 144 LVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFIG 190 (193)
Q Consensus 144 li~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~~ 190 (193)
+|..++|+.|+++...++.+|.+.+++.. +..|.+.++.+|+..++.
T Consensus 76 vv~aSsGN~g~a~A~aa~~~G~~~~ivmp~~~~~~k~~~~~~~GA~Vv~~ 125 (406)
T PRK06382 76 VITASAGNHAQGVAYAASINGIDAKIVMPEYTIPQKVNAVEAYGAHVILT 125 (406)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHcCCEEEEE
Confidence 55666799999999999999998777665 346778888999976553
No 387
>PRK06487 glycerate dehydrogenase; Provisional
Probab=87.90 E-value=1.1 Score=36.05 Aligned_cols=34 Identities=18% Similarity=0.332 Sum_probs=30.6
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGL 173 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~ 173 (193)
.|+++.|.|- |.+|..+++.++.+|++|+...++
T Consensus 147 ~gktvgIiG~-G~IG~~vA~~l~~fgm~V~~~~~~ 180 (317)
T PRK06487 147 EGKTLGLLGH-GELGGAVARLAEAFGMRVLIGQLP 180 (317)
T ss_pred CCCEEEEECC-CHHHHHHHHHHhhCCCEEEEECCC
Confidence 4679999996 999999999999999999988865
No 388
>PRK06932 glycerate dehydrogenase; Provisional
Probab=87.67 E-value=1.2 Score=35.85 Aligned_cols=34 Identities=21% Similarity=0.328 Sum_probs=30.5
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGL 173 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~ 173 (193)
.|.++.|+|- |.+|..+++.++.+|++|+...++
T Consensus 146 ~gktvgIiG~-G~IG~~va~~l~~fg~~V~~~~~~ 179 (314)
T PRK06932 146 RGSTLGVFGK-GCLGTEVGRLAQALGMKVLYAEHK 179 (314)
T ss_pred CCCEEEEECC-CHHHHHHHHHHhcCCCEEEEECCC
Confidence 3689999996 999999999999999999988764
No 389
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=87.66 E-value=1.6 Score=26.49 Aligned_cols=30 Identities=23% Similarity=0.058 Sum_probs=25.6
Q ss_pred EEcCCchHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425 145 VHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT 175 (193)
Q Consensus 145 i~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~ 175 (193)
|+|+ |..|+++...++..|.+|.+..+++.
T Consensus 1 IiGa-G~sGl~aA~~L~~~g~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGA-GISGLAAAYYLAKAGYRVTVFEKNDR 30 (68)
T ss_dssp EES--SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEee-CHHHHHHHHHHHHCCCcEEEEecCcc
Confidence 6787 99999999999999999999998754
No 390
>PLN02256 arogenate dehydrogenase
Probab=87.62 E-value=2.9 Score=33.52 Aligned_cols=51 Identities=16% Similarity=0.053 Sum_probs=38.3
Q ss_pred HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCC
Q 029425 133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNI 185 (193)
Q Consensus 133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~ 185 (193)
+...-..+.+|.|+|. |.+|...+..++..|.+|+++.+++. .+.++++|+
T Consensus 29 ~~~~~~~~~kI~IIG~-G~mG~slA~~L~~~G~~V~~~d~~~~-~~~a~~~gv 79 (304)
T PLN02256 29 EELEKSRKLKIGIVGF-GNFGQFLAKTFVKQGHTVLATSRSDY-SDIAAELGV 79 (304)
T ss_pred HhhccCCCCEEEEEee-CHHHHHHHHHHHhCCCEEEEEECccH-HHHHHHcCC
Confidence 3334445678999996 99999999988888889999988763 355555665
No 391
>PRK06450 threonine synthase; Validated
Probab=87.61 E-value=1.9 Score=35.02 Aligned_cols=49 Identities=12% Similarity=0.163 Sum_probs=39.2
Q ss_pred CeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425 141 ESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI 189 (193)
Q Consensus 141 ~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~ 189 (193)
...++..++|+.|.++..+++..|.+.++++. +..|...++.+|+..+.
T Consensus 97 ~~~vv~aSsGN~g~slA~~aa~~G~~~~i~vP~~~~~~k~~~i~~~GA~vi~ 148 (338)
T PRK06450 97 IKQISEDSSGNAGASIAAYGAAAGIEVKIFVPETASGGKLKQIESYGAEVVR 148 (338)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEE
Confidence 34566677899999999999999998777665 55688888999996543
No 392
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=87.47 E-value=1.5 Score=35.55 Aligned_cols=37 Identities=11% Similarity=0.155 Sum_probs=32.6
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcch
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATR 176 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~ 176 (193)
.|.++.|+|. |.+|...++.++.+|.+|+...++.+.
T Consensus 145 ~g~~VgIIG~-G~IG~~vA~~L~~~G~~V~~~d~~~~~ 181 (330)
T PRK12480 145 KNMTVAIIGT-GRIGAATAKIYAGFGATITAYDAYPNK 181 (330)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCChhH
Confidence 4668999997 999999999999999999999987653
No 393
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=87.43 E-value=4.7 Score=30.76 Aligned_cols=59 Identities=14% Similarity=0.166 Sum_probs=48.1
Q ss_pred HhcCCCCCCeEEEEcCCchHHHHHHHHHHH-CCC-EEEEEeCCcchHHHHhhcCCcEEecC
Q 029425 133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKC-QGV-RVFVTAGLATRFILCQPFNIRVFIGF 191 (193)
Q Consensus 133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~-~g~-~v~~~~~~~~~~~~~~~~G~~~~~~~ 191 (193)
..+++..-|.+++.=..-..-+.++++++. +|. ++++-+++++..+.++++|++.++++
T Consensus 60 ~~agi~~aD~vva~t~~d~~N~i~~~la~~~~gv~~viar~~~~~~~~~~~~~g~~~ii~P 120 (225)
T COG0569 60 EEAGIDDADAVVAATGNDEVNSVLALLALKEFGVPRVIARARNPEHEKVLEKLGADVIISP 120 (225)
T ss_pred HhcCCCcCCEEEEeeCCCHHHHHHHHHHHHhcCCCcEEEEecCHHHHHHHHHcCCcEEECH
Confidence 556677777775544447788889999987 787 89999999999999999999999875
No 394
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=87.39 E-value=2.1 Score=34.75 Aligned_cols=46 Identities=15% Similarity=0.101 Sum_probs=36.0
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc-hHHHHhhcCC
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT-RFILCQPFNI 185 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~-~~~~~~~~G~ 185 (193)
.+.+|.|+|. |.+|.+.++-++..|.+|++..+... ..+.+++.|+
T Consensus 16 ~gktIgIIG~-GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~ 62 (330)
T PRK05479 16 KGKKVAIIGY-GSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGF 62 (330)
T ss_pred CCCEEEEEee-HHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCC
Confidence 4678999997 99999999999999999988766533 4455556665
No 395
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=87.36 E-value=1.5 Score=35.19 Aligned_cols=36 Identities=11% Similarity=-0.000 Sum_probs=31.9
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT 175 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~ 175 (193)
.|.++.|.|- |.+|...++.++.+|++|+...++.+
T Consensus 135 ~g~tvgIvG~-G~IG~~vA~~l~afG~~V~~~~~~~~ 170 (312)
T PRK15469 135 EDFTIGILGA-GVLGSKVAQSLQTWGFPLRCWSRSRK 170 (312)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 5789999996 99999999999999999999887544
No 396
>PLN02477 glutamate dehydrogenase
Probab=87.32 E-value=3.4 Score=34.60 Aligned_cols=34 Identities=21% Similarity=0.542 Sum_probs=29.8
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGL 173 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~ 173 (193)
.|.++.|.|- |.+|+.+++++...|++|+.+..+
T Consensus 205 ~g~~VaIqGf-GnVG~~~A~~L~e~GakVVaVsD~ 238 (410)
T PLN02477 205 AGQTFVIQGF-GNVGSWAAQLIHEKGGKIVAVSDI 238 (410)
T ss_pred cCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEECC
Confidence 5789999996 999999999999999999966544
No 397
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=87.15 E-value=4.9 Score=33.19 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=31.0
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA 174 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~ 174 (193)
...+|.|.|+.|.+|......++..|..|++..+++
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~ 132 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDD 132 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCc
Confidence 346899999779999999999999999999998754
No 398
>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D ....
Probab=86.97 E-value=1.8 Score=34.19 Aligned_cols=50 Identities=12% Similarity=0.173 Sum_probs=38.5
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC---cchHHHHhhcCCcEEe
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGL---ATRFILCQPFNIRVFI 189 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~---~~~~~~~~~~G~~~~~ 189 (193)
..++| +.+++|+.|.+++..++.+|.+++++... +.+...++.+|+..+.
T Consensus 55 ~~~~v-v~assGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 107 (306)
T PF00291_consen 55 GGRTV-VGASSGNHGRALAYAAARLGLKCTIVVPEDVSPEKLKQMRALGAEVIL 107 (306)
T ss_dssp TTSEE-EEESSSHHHHHHHHHHHHHTCEEEEEEETTSHHHHHHHHHHTTCEEEE
T ss_pred cccee-eeeccCCceehhhhhhhhccccceeeeccccccccccceeeecceEEE
Confidence 33445 77788999999999999999988777753 3466777889996553
No 399
>PRK08639 threonine dehydratase; Validated
Probab=86.84 E-value=3.2 Score=34.86 Aligned_cols=44 Identities=7% Similarity=-0.071 Sum_probs=36.0
Q ss_pred EEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCc
Q 029425 143 FLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIR 186 (193)
Q Consensus 143 vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~ 186 (193)
-+|..++|+.|+.+...++.+|.+.+++.. +..|.+.++.+|++
T Consensus 75 ~Vv~aSsGN~g~alA~~a~~~G~~~~IvmP~~~~~~k~~~~r~~GA~ 121 (420)
T PRK08639 75 GVVCASAGNHAQGVAYACRHLGIPGVIFMPVTTPQQKIDQVRFFGGE 121 (420)
T ss_pred EEEEECccHHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHcCCC
Confidence 455666799999999999999998777775 34578888999996
No 400
>KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism]
Probab=86.83 E-value=1.9 Score=32.39 Aligned_cols=46 Identities=28% Similarity=0.230 Sum_probs=36.5
Q ss_pred CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchH-HHHhhcCC
Q 029425 140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRF-ILCQPFNI 185 (193)
Q Consensus 140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~-~~~~~~G~ 185 (193)
....+|+|+++++|.+..|.+-..|++|.+........ +.++.+|.
T Consensus 14 sk~~~vtGg~sGIGrAia~~la~~Garv~v~dl~~~~A~ata~~L~g 60 (256)
T KOG1200|consen 14 SKVAAVTGGSSGIGRAIAQLLAKKGARVAVADLDSAAAEATAGDLGG 60 (256)
T ss_pred cceeEEecCCchHHHHHHHHHHhcCcEEEEeecchhhHHHHHhhcCC
Confidence 45679999999999999999999999999888765544 33445654
No 401
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.81 E-value=8.1 Score=30.69 Aligned_cols=69 Identities=14% Similarity=0.047 Sum_probs=46.5
Q ss_pred CcchHHHHHHHHHHhcCCC-CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEec
Q 029425 120 FPEVACTVWSTVFMTSHLS-PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIG 190 (193)
Q Consensus 120 ~~~~~~~a~~~l~~~~~~~-~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~ 190 (193)
.|+.....+..| +..++. .|++++|.|-+..+|.-+..+++..|+.|++.-+....++.. -..+|.+++
T Consensus 139 ~PcTp~av~~ll-~~~~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T~~l~~~-~~~ADIvi~ 208 (285)
T PRK10792 139 RPCTPRGIMTLL-ERYGIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFTKNLRHH-VRNADLLVV 208 (285)
T ss_pred CCCCHHHHHHHH-HHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCCCCHHHH-HhhCCEEEE
Confidence 455555555555 333332 589999999988899999999999999999887654433221 135566654
No 402
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=86.81 E-value=3.3 Score=31.27 Aligned_cols=52 Identities=21% Similarity=0.284 Sum_probs=40.5
Q ss_pred HHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHH----HHhhcCCc
Q 029425 132 FMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFI----LCQPFNIR 186 (193)
Q Consensus 132 ~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~----~~~~~G~~ 186 (193)
.....++++++||=+| ++.|..++-+++..+ +|+.+.+.++-.+ .++.+|..
T Consensus 65 ~~~L~~~~g~~VLEIG--tGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~ 120 (209)
T COG2518 65 LQLLELKPGDRVLEIG--TGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYE 120 (209)
T ss_pred HHHhCCCCCCeEEEEC--CCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCC
Confidence 3667899999999998 567899999999877 9998888776333 34567774
No 403
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=86.76 E-value=5.8 Score=31.43 Aligned_cols=43 Identities=14% Similarity=0.030 Sum_probs=32.9
Q ss_pred CCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHhh
Q 029425 137 LSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQP 182 (193)
Q Consensus 137 ~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~~ 182 (193)
..++++|+-.|+ |. |..++.+++ .|+ +|+.++.++...+.+++
T Consensus 157 ~~~g~~VLDvGc-Gs-G~lai~aa~-~g~~~V~avDid~~al~~a~~ 200 (288)
T TIGR00406 157 DLKDKNVIDVGC-GS-GILSIAALK-LGAAKVVGIDIDPLAVESARK 200 (288)
T ss_pred cCCCCEEEEeCC-Ch-hHHHHHHHH-cCCCeEEEEECCHHHHHHHHH
Confidence 457899999986 55 888777766 465 89999999887776654
No 404
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=86.71 E-value=2.5 Score=29.69 Aligned_cols=36 Identities=11% Similarity=0.172 Sum_probs=29.7
Q ss_pred eEEEEcCCchHHHHHHHHHHHCCC--EEEEEeCCcchH
Q 029425 142 SFLVHGGSSGIGTFAIQMGKCQGV--RVFVTAGLATRF 177 (193)
Q Consensus 142 ~vli~ga~g~~G~~~i~~~~~~g~--~v~~~~~~~~~~ 177 (193)
+|.|+|++|.+|..++..+...+. ++.+.+..+++.
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~ 39 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKA 39 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHH
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccc
Confidence 578999999999999888888774 788898886644
No 405
>PRK07334 threonine dehydratase; Provisional
Probab=86.67 E-value=3.1 Score=34.70 Aligned_cols=46 Identities=7% Similarity=0.052 Sum_probs=37.7
Q ss_pred EEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425 144 LVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI 189 (193)
Q Consensus 144 li~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~ 189 (193)
+|..++|+.|.++..+++.+|.+.+++.. ++.|.+.++.+|+..++
T Consensus 74 vv~aSsGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~ 122 (403)
T PRK07334 74 VIAMSAGNHAQGVAYHAQRLGIPATIVMPRFTPTVKVERTRGFGAEVVL 122 (403)
T ss_pred EEEECCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEE
Confidence 45566799999999999999998777775 45688888999996554
No 406
>PRK08206 diaminopropionate ammonia-lyase; Provisional
Probab=86.56 E-value=2.6 Score=35.11 Aligned_cols=47 Identities=9% Similarity=0.041 Sum_probs=38.3
Q ss_pred EEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425 143 FLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI 189 (193)
Q Consensus 143 vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~ 189 (193)
.++...+|+.|.++...++.+|.+.+++.. ++.|...++.+|+..++
T Consensus 118 ~vv~aSsGN~g~alA~~a~~~G~~~~Ivvp~~~~~~k~~~i~~~GA~Vi~ 167 (399)
T PRK08206 118 TFATATDGNHGRGVAWAAQQLGQKAVIYMPKGSSEERVDAIRALGAECII 167 (399)
T ss_pred EEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEE
Confidence 456677899999999999999998887776 45678888899996554
No 407
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=86.53 E-value=2.5 Score=34.01 Aligned_cols=159 Identities=16% Similarity=0.097 Sum_probs=86.0
Q ss_pred CCCeEEEEEeEecCCh-hhhhhhc-CCCCCCCCCCCCCC-cceEEEEEEecCC-CCCCCCCCEEEEEccC---cee----
Q 029425 26 KDDEVLIKVEATALNR-ADTLQRK-GSYPPPKGASPYPG-LECSGTILSVGKN-VSRWKVGDQVCALLGG---GGY---- 94 (193)
Q Consensus 26 ~~~evlV~v~~~~v~~-~d~~~~~-~~~~~~~~~p~~lg-~e~~G~V~~vG~~-~~~~~~G~~V~~~~~~---g~~---- 94 (193)
..+||+|+.-+..-+. .|..+.. |..-. .+....+. .|.+=.|.+--+. ..-|+.|+..+.+... ...
T Consensus 29 ~GheVlVe~gAG~gsg~~D~~Y~~aGA~Iv-~ta~~vw~~~dmvvKvKEP~~~EY~ylregqiLftyLHLA~~~~lt~~l 107 (371)
T COG0686 29 HGHEVLVETGAGAGSGFDDDDYEAAGAKIV-ATAAEVWAEADMVVKVKEPLPSEYPYLREGQILFTYLHLAASPELTEAL 107 (371)
T ss_pred CCcEEEEecCCcCCCCCChHHHHHcCCEEe-cCHHHhhcccceEEEecCCChhhhhhhcCCcEEEEEeeecCChHHHHHH
Confidence 4568999988776543 3433332 22110 01112444 5665555553222 2358999998876421 000
Q ss_pred -eeEEeecCCceEECCCC-----CCHHhHccCcchHHHHHHHHHHhcCC---------CCCCeEEEEcCCchHHHHHHHH
Q 029425 95 -AEKVAVPAGQVLPVPSG-----VSLKDAAAFPEVACTVWSTVFMTSHL---------SPGESFLVHGGSSGIGTFAIQM 159 (193)
Q Consensus 95 -~~~~~~~~~~~~~~p~~-----~~~~~aa~~~~~~~~a~~~l~~~~~~---------~~~~~vli~ga~g~~G~~~i~~ 159 (193)
.+.++.-.--.+.+|++ -.+.+.|.-...-..+++-....+.. -+..++.|+|+ |.+|.-+..+
T Consensus 108 ~~~gvtaIayETV~~~~g~lPlLaPMSeVAGrla~q~Ga~~lek~~GG~GvllgGvpGV~~~kv~iiGG-GvvgtnaAki 186 (371)
T COG0686 108 LKSGVTAIAYETVQLPDGNLPLLAPMSEVAGRLAAQAGAYYLEKTNGGKGVLLGGVPGVLPAKVVVLGG-GVVGTNAAKI 186 (371)
T ss_pred HHcCcceEEEEEEEcCCCCCcccchHHHHhhhHHHHHHHHHHHhccCCceeEecCCCCCCCccEEEECC-ccccchHHHH
Confidence 00000000011222331 23445444433444555533222211 12345667787 9999999999
Q ss_pred HHHCCCEEEEEeCCcchHHHHhh-cCCc
Q 029425 160 GKCQGVRVFVTAGLATRFILCQP-FNIR 186 (193)
Q Consensus 160 ~~~~g~~v~~~~~~~~~~~~~~~-~G~~ 186 (193)
|.-+|++|.+.+.+.+|++.+.. +|-+
T Consensus 187 A~glgA~Vtild~n~~rl~~ldd~f~~r 214 (371)
T COG0686 187 AIGLGADVTILDLNIDRLRQLDDLFGGR 214 (371)
T ss_pred HhccCCeeEEEecCHHHHhhhhHhhCce
Confidence 99999999999999999999876 5544
No 408
>PLN02503 fatty acyl-CoA reductase 2
Probab=86.43 E-value=1.5 Score=38.57 Aligned_cols=39 Identities=13% Similarity=0.239 Sum_probs=30.8
Q ss_pred CCCCCeEEEEcCCchHHHHHHHHHHHC--C-CEEEEEeCCcc
Q 029425 137 LSPGESFLVHGGSSGIGTFAIQMGKCQ--G-VRVFVTAGLAT 175 (193)
Q Consensus 137 ~~~~~~vli~ga~g~~G~~~i~~~~~~--g-~~v~~~~~~~~ 175 (193)
.=.+.+|||+|++|-+|..++.-+... . .+|++.++..+
T Consensus 116 f~~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~ 157 (605)
T PLN02503 116 FLRGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKD 157 (605)
T ss_pred hhcCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCC
Confidence 346899999999999999888666543 3 38999998654
No 409
>PRK06260 threonine synthase; Validated
Probab=86.33 E-value=2.4 Score=35.21 Aligned_cols=49 Identities=6% Similarity=0.060 Sum_probs=37.6
Q ss_pred CeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC----cchHHHHhhcCCcEEe
Q 029425 141 ESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGL----ATRFILCQPFNIRVFI 189 (193)
Q Consensus 141 ~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~----~~~~~~~~~~G~~~~~ 189 (193)
...+|...+|+.|.++..+++..|.+++++... ..|+..++.+|+..+.
T Consensus 115 ~~~vv~aSsGN~g~alA~~aa~~G~~~~i~vP~~~~~~~k~~~~~~~GA~vi~ 167 (397)
T PRK06260 115 VKTVACASTGNTSASLAAYAARAGLKCYVLLPAGKVALGKLAQALLHGAKVLE 167 (397)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHcCCcEEEEEeCCCccHHHHHHHHhcCCEEEE
Confidence 345666788999999999999999987777653 3467777889986443
No 410
>PRK08526 threonine dehydratase; Provisional
Probab=86.33 E-value=4.1 Score=34.04 Aligned_cols=46 Identities=7% Similarity=0.075 Sum_probs=37.2
Q ss_pred EEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425 144 LVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI 189 (193)
Q Consensus 144 li~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~ 189 (193)
+|..++|+.|+.+...++.+|.+.+++.. +..|.+..+.+|+..++
T Consensus 71 VV~aSaGNhg~avA~aa~~~Gi~~~IvmP~~~p~~k~~~~r~~GA~Vv~ 119 (403)
T PRK08526 71 VIAASAGNHAQGVAISAKKFGIKAVIVMPEATPLLKVSGTKALGAEVIL 119 (403)
T ss_pred EEEECccHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHhCCCEEEE
Confidence 56678899999999999999998776665 34677888899997655
No 411
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=86.32 E-value=0.89 Score=31.49 Aligned_cols=51 Identities=10% Similarity=0.012 Sum_probs=33.0
Q ss_pred CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEe-CCcchHHHHhh-cCCcEEecC
Q 029425 140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTA-GLATRFILCQP-FNIRVFIGF 191 (193)
Q Consensus 140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~-~~~~~~~~~~~-~G~~~~~~~ 191 (193)
.-+|-|+|+ |.+|..+...++..|..|..+. ++.++.+.+.. ++...+.+.
T Consensus 10 ~l~I~iIGa-GrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~ 62 (127)
T PF10727_consen 10 RLKIGIIGA-GRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDL 62 (127)
T ss_dssp --EEEEECT-SCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----T
T ss_pred ccEEEEECC-CHHHHHHHHHHHHCCCeEEEEEeCCccccccccccccccccccc
Confidence 457899998 9999999999999999988764 55555566554 555444443
No 412
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.25 E-value=8.5 Score=30.46 Aligned_cols=57 Identities=16% Similarity=0.180 Sum_probs=40.9
Q ss_pred CcchHHHHHHHHHHhcCC-CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchH
Q 029425 120 FPEVACTVWSTVFMTSHL-SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRF 177 (193)
Q Consensus 120 ~~~~~~~a~~~l~~~~~~-~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~ 177 (193)
+|+.....+..|.. .++ -.|++++|.|-+..+|.=+..++...|+.|++.-+....+
T Consensus 138 ~PcTp~av~~lL~~-~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T~~l 195 (278)
T PRK14172 138 LPCTPNSVITLIKS-LNIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSKTKNL 195 (278)
T ss_pred cCCCHHHHHHHHHH-hCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCCCCH
Confidence 34444444444433 333 3689999999999999999999999999998876544433
No 413
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=86.21 E-value=3.6 Score=35.41 Aligned_cols=46 Identities=7% Similarity=0.073 Sum_probs=37.3
Q ss_pred EEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425 144 LVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI 189 (193)
Q Consensus 144 li~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~ 189 (193)
+|..++|+.|+.+...|+.+|++.+++.. +..|.+.++.+|+..++
T Consensus 68 VV~aSaGNha~~vA~aa~~~Gi~~~IvmP~~tp~~Kv~~~r~~GA~Vvl 116 (499)
T TIGR01124 68 VIAASAGNHAQGVAFSAARLGLKALIVMPETTPDIKVDAVRGFGGEVVL 116 (499)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEE
Confidence 56667799999999999999998776665 34578888999996655
No 414
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia.
Probab=86.12 E-value=2.9 Score=33.35 Aligned_cols=50 Identities=16% Similarity=0.152 Sum_probs=37.6
Q ss_pred CCeEEEE-c-CCchHHHHHHHHHHHCCCEEEEEeCCc-----------chHHHHhhcCCcEEe
Q 029425 140 GESFLVH-G-GSSGIGTFAIQMGKCQGVRVFVTAGLA-----------TRFILCQPFNIRVFI 189 (193)
Q Consensus 140 ~~~vli~-g-a~g~~G~~~i~~~~~~g~~v~~~~~~~-----------~~~~~~~~~G~~~~~ 189 (193)
|.+.+|. | ++|+.|.++..+++.+|.+.+++.+.. .+...++.+|++.++
T Consensus 51 g~~~vv~~ggs~GN~g~alA~~a~~~G~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~Ga~v~~ 113 (307)
T cd06449 51 GADTLVTVGGIQSNHTRQVAAVAAKLGLKCVLVQENWVPYSDAVYDRVGNILLSRIMGADVRL 113 (307)
T ss_pred CCCEEEECCCchhHHHHHHHHHHHHcCCeEEEEecCCCCcccccccccccHHHHHHCCCEEEE
Confidence 3344454 3 568999999999999999888877643 367788899997554
No 415
>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions. In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions.
Probab=86.10 E-value=2.6 Score=34.59 Aligned_cols=48 Identities=10% Similarity=0.100 Sum_probs=36.0
Q ss_pred eEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc------chHHHHhhcCCcEEe
Q 029425 142 SFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA------TRFILCQPFNIRVFI 189 (193)
Q Consensus 142 ~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~------~~~~~~~~~G~~~~~ 189 (193)
.+++..++|+.|.++..+++.+|.+.+++.... .+...++.+|+..++
T Consensus 84 ~vv~~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~~~~GAeV~~ 137 (365)
T cd06446 84 RVIAETGAGQHGVATATACALFGLECEIYMGAVDVERQPLNVFRMELLGAEVVP 137 (365)
T ss_pred eEEEecCchHHHHHHHHHHHHhCCCeEEEEcCCccccccchHHHHHHCCCEEEE
Confidence 455545569999999999999999877776532 345678899996554
No 416
>PRK09414 glutamate dehydrogenase; Provisional
Probab=86.05 E-value=4.3 Score=34.36 Aligned_cols=34 Identities=21% Similarity=0.429 Sum_probs=30.5
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC
Q 029425 138 SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG 172 (193)
Q Consensus 138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~ 172 (193)
-.|.+|.|.|- |.+|+.+++++..+|++|+.+..
T Consensus 230 l~g~rVaIqGf-GnVG~~~A~~L~~~GakVVavsD 263 (445)
T PRK09414 230 FEGKRVVVSGS-GNVAIYAIEKAQQLGAKVVTCSD 263 (445)
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEEc
Confidence 36889999996 99999999999999999998854
No 417
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=86.00 E-value=3.7 Score=34.73 Aligned_cols=53 Identities=17% Similarity=0.113 Sum_probs=39.6
Q ss_pred CCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCc--------chHHHHhhcCCcEEec
Q 029425 137 LSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLA--------TRFILCQPFNIRVFIG 190 (193)
Q Consensus 137 ~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~--------~~~~~~~~~G~~~~~~ 190 (193)
+..+++++|.|+ |.+|.-++..+..+|+ +|.++.+.. ...+.+++.|.....+
T Consensus 270 ~~~g~~VvViGg-G~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~~~~~~~~~~~~GV~i~~~ 331 (457)
T PRK11749 270 LPVGKRVVVIGG-GNTAMDAARTAKRLGAESVTIVYRRGREEMPASEEEVEHAKEEGVEFEWL 331 (457)
T ss_pred CCCCCeEEEECC-CHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHCCCEEEec
Confidence 347899999997 9999988888888998 888887632 2345566778765543
No 418
>TIGR00263 trpB tryptophan synthase, beta subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model.
Probab=85.77 E-value=4.2 Score=33.73 Aligned_cols=49 Identities=12% Similarity=0.164 Sum_probs=36.0
Q ss_pred CeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc------chHHHHhhcCCcEEe
Q 029425 141 ESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA------TRFILCQPFNIRVFI 189 (193)
Q Consensus 141 ~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~------~~~~~~~~~G~~~~~ 189 (193)
+.+++..++|+.|.++...++.+|.+.+++.... .+...++.+|++.++
T Consensus 99 ~~vi~e~ssGN~G~alA~~a~~~Gl~~~Iv~p~~~~~~~~~~~~~~~~~GA~Vv~ 153 (385)
T TIGR00263 99 KRIIAETGAGQHGVATATAAALLGLDCEVYMGAEDVERQKPNVFRMELLGAKVIP 153 (385)
T ss_pred CEEEEEcCcHHHHHHHHHHHHHcCCCEEEEecCCcccccchHHHHHHHcCCEEEE
Confidence 4566645569999999999999999877775421 234568889997554
No 419
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=85.56 E-value=3.9 Score=27.18 Aligned_cols=47 Identities=19% Similarity=0.310 Sum_probs=36.8
Q ss_pred HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCC-CEEEEEeCCcchHHHHh
Q 029425 133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQG-VRVFVTAGLATRFILCQ 181 (193)
Q Consensus 133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g-~~v~~~~~~~~~~~~~~ 181 (193)
....++++++++-.|+ |. |..+..+++..+ .+++.++.++...+.++
T Consensus 13 ~~~~~~~~~~vldlG~-G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~ 60 (124)
T TIGR02469 13 SKLRLRPGDVLWDIGA-GS-GSITIEAARLVPNGRVYAIERNPEALRLIE 60 (124)
T ss_pred HHcCCCCCCEEEEeCC-CC-CHHHHHHHHHCCCceEEEEcCCHHHHHHHH
Confidence 3445677888988885 55 999999999864 69999999888777664
No 420
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=85.51 E-value=2.7 Score=29.36 Aligned_cols=39 Identities=21% Similarity=0.302 Sum_probs=27.0
Q ss_pred HhcCCCCCCeEEEEcCCchHH--HHHHHHHHHCCCEEEEEe
Q 029425 133 MTSHLSPGESFLVHGGSSGIG--TFAIQMGKCQGVRVFVTA 171 (193)
Q Consensus 133 ~~~~~~~~~~vli~ga~g~~G--~~~i~~~~~~g~~v~~~~ 171 (193)
...+.++||.++++..+|.-. .-+++.||..|++|+.++
T Consensus 97 ~~~~~~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vIalT 137 (138)
T PF13580_consen 97 ALYDIRPGDVLIVISNSGNSPNVIEAAEEAKERGMKVIALT 137 (138)
T ss_dssp HHTT--TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEEEEE
T ss_pred HHcCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 345689999999887766655 558899999999999876
No 421
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.45 E-value=9.2 Score=30.42 Aligned_cols=57 Identities=14% Similarity=0.110 Sum_probs=40.7
Q ss_pred CcchHHHHHHHHHHhcCCC-CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchH
Q 029425 120 FPEVACTVWSTVFMTSHLS-PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRF 177 (193)
Q Consensus 120 ~~~~~~~a~~~l~~~~~~~-~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~ 177 (193)
+|+.....+..| +..+++ .|++++|.|.+..+|.=+..++...|+.|++.-+....+
T Consensus 135 ~PcTp~avi~lL-~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~T~~l 192 (287)
T PRK14173 135 EPCTPAGVVRLL-KHYGIPLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKTQDL 192 (287)
T ss_pred CCCCHHHHHHHH-HHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCCCCH
Confidence 344444444444 333443 689999999999999999999999999998776544433
No 422
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.43 E-value=3.4 Score=35.14 Aligned_cols=33 Identities=15% Similarity=-0.014 Sum_probs=30.3
Q ss_pred CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC
Q 029425 140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGL 173 (193)
Q Consensus 140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~ 173 (193)
+++++|+|. |..|.+++++++..|++|++.+..
T Consensus 8 ~~~v~v~G~-G~sG~~~~~~l~~~g~~v~~~d~~ 40 (468)
T PRK04690 8 GRRVALWGW-GREGRAAYRALRAHLPAQALTLFC 40 (468)
T ss_pred CCEEEEEcc-chhhHHHHHHHHHcCCEEEEEcCC
Confidence 678999997 999999999999999999999954
No 423
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=85.29 E-value=2 Score=35.88 Aligned_cols=35 Identities=23% Similarity=0.282 Sum_probs=31.4
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA 174 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~ 174 (193)
.|.++.|+|- |.+|...++.++.+|++|+...++.
T Consensus 150 ~gktvGIiG~-G~IG~~vA~~~~~fGm~V~~~d~~~ 184 (409)
T PRK11790 150 RGKTLGIVGY-GHIGTQLSVLAESLGMRVYFYDIED 184 (409)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEECCCc
Confidence 4679999996 9999999999999999999998753
No 424
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=85.25 E-value=4.3 Score=33.98 Aligned_cols=43 Identities=12% Similarity=-0.049 Sum_probs=35.9
Q ss_pred EEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCc
Q 029425 144 LVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIR 186 (193)
Q Consensus 144 li~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~ 186 (193)
+|..++|+.|+++...++.+|.+.+++.. +..|...++.+|+.
T Consensus 67 vv~aSsGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~ 112 (409)
T TIGR02079 67 VVCASAGNHAQGFAYACRHLGVHGTVFMPATTPKQKIDRVKIFGGE 112 (409)
T ss_pred EEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCC
Confidence 56666799999999999999998777765 34577888999996
No 425
>PLN02996 fatty acyl-CoA reductase
Probab=85.07 E-value=1.7 Score=37.21 Aligned_cols=38 Identities=11% Similarity=0.170 Sum_probs=29.5
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHHHC--CC-EEEEEeCCcc
Q 029425 138 SPGESFLVHGGSSGIGTFAIQMGKCQ--GV-RVFVTAGLAT 175 (193)
Q Consensus 138 ~~~~~vli~ga~g~~G~~~i~~~~~~--g~-~v~~~~~~~~ 175 (193)
=.+.+|||+|++|-+|..++.-+... .. +|++.+|+..
T Consensus 9 ~~~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~LvR~~~ 49 (491)
T PLN02996 9 LENKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASD 49 (491)
T ss_pred hCCCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEEeCCC
Confidence 35789999999999999888665443 33 7899998664
No 426
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=84.96 E-value=2.2 Score=35.34 Aligned_cols=34 Identities=9% Similarity=0.103 Sum_probs=31.1
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGL 173 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~ 173 (193)
.|.++.|+|. |.+|..+.+.++.+|++|+...+.
T Consensus 115 ~gktvGIIG~-G~IG~~vA~~l~a~G~~V~~~dp~ 148 (378)
T PRK15438 115 HDRTVGIVGV-GNVGRRLQARLEALGIKTLLCDPP 148 (378)
T ss_pred CCCEEEEECc-CHHHHHHHHHHHHCCCEEEEECCc
Confidence 6889999996 999999999999999999998753
No 427
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=84.81 E-value=3.1 Score=35.99 Aligned_cols=35 Identities=20% Similarity=0.249 Sum_probs=31.4
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA 174 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~ 174 (193)
.|.++.|+|- |.+|...++.++.+|++|+...++.
T Consensus 139 ~gktvgIiG~-G~IG~~vA~~l~~fG~~V~~~d~~~ 173 (526)
T PRK13581 139 YGKTLGIIGL-GRIGSEVAKRAKAFGMKVIAYDPYI 173 (526)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCEEEEECCCC
Confidence 4789999996 9999999999999999999998753
No 428
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=84.76 E-value=9.8 Score=30.23 Aligned_cols=54 Identities=20% Similarity=0.235 Sum_probs=39.2
Q ss_pred CcchHHHHHHHHHHhcCCC-CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc
Q 029425 120 FPEVACTVWSTVFMTSHLS-PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA 174 (193)
Q Consensus 120 ~~~~~~~a~~~l~~~~~~~-~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~ 174 (193)
+|+.....+..| +..+++ .|.+++|.|.+..+|.-+..++...|+.|++.-...
T Consensus 137 ~PcTp~avi~lL-~~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t 191 (285)
T PRK14191 137 VPATPMGVMRLL-KHYHIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT 191 (285)
T ss_pred CCCcHHHHHHHH-HHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc
Confidence 444544455444 333433 589999999977999999999999999998875433
No 429
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=84.68 E-value=4.1 Score=33.80 Aligned_cols=35 Identities=17% Similarity=0.225 Sum_probs=31.5
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC
Q 029425 138 SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGL 173 (193)
Q Consensus 138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~ 173 (193)
-.|.++.|+|. |.+|..+++.++.+|++|++.+++
T Consensus 114 l~gktvGIIG~-G~IG~~va~~l~a~G~~V~~~Dp~ 148 (381)
T PRK00257 114 LAERTYGVVGA-GHVGGRLVRVLRGLGWKVLVCDPP 148 (381)
T ss_pred cCcCEEEEECC-CHHHHHHHHHHHHCCCEEEEECCc
Confidence 36789999997 999999999999999999998864
No 430
>KOG1199 consensus Short-chain alcohol dehydrogenase/3-hydroxyacyl-CoA dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=84.58 E-value=4.4 Score=29.83 Aligned_cols=54 Identities=22% Similarity=0.202 Sum_probs=42.7
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc-hHHHHhhcCCcEEecC
Q 029425 138 SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT-RFILCQPFNIRVFIGF 191 (193)
Q Consensus 138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~-~~~~~~~~G~~~~~~~ 191 (193)
-+|-.-+|+|+++++|.+...-+...|+.+++.+-... ..+.++++|-..+|.+
T Consensus 7 ~kglvalvtggasglg~ataerlakqgasv~lldlp~skg~~vakelg~~~vf~p 61 (260)
T KOG1199|consen 7 TKGLVALVTGGASGLGKATAERLAKQGASVALLDLPQSKGADVAKELGGKVVFTP 61 (260)
T ss_pred hcCeeEEeecCcccccHHHHHHHHhcCceEEEEeCCcccchHHHHHhCCceEEec
Confidence 35666799999999999999988889999988886555 4566778998777654
No 431
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=84.43 E-value=8.3 Score=30.63 Aligned_cols=52 Identities=17% Similarity=0.084 Sum_probs=38.1
Q ss_pred CcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEe
Q 029425 120 FPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTA 171 (193)
Q Consensus 120 ~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~ 171 (193)
+|+........|....---.|+++.|.|-++.+|.-...++...|++|++.-
T Consensus 138 ~PcTp~avi~lL~~~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~ 189 (284)
T PRK14179 138 IPCTPAGIMEMFREYNVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTH 189 (284)
T ss_pred cCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEEC
Confidence 4444444444443322224689999999999999999999999999998873
No 432
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=84.41 E-value=12 Score=29.78 Aligned_cols=69 Identities=14% Similarity=0.017 Sum_probs=44.9
Q ss_pred CcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEe
Q 029425 120 FPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFI 189 (193)
Q Consensus 120 ~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~ 189 (193)
+|+.....+..|....---.|++++|.|-+..+|.=+..++...++.|++.-+....++..- ..||.++
T Consensus 137 ~PcTp~avi~ll~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~T~nl~~~~-~~ADIvI 205 (282)
T PRK14182 137 RPCTPAGVMRMLDEARVDPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSRTADLAGEV-GRADILV 205 (282)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHHHHH-hhCCEEE
Confidence 45554444444432222237899999999999999999999999999887765443332211 2355554
No 433
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=84.32 E-value=12 Score=29.71 Aligned_cols=69 Identities=13% Similarity=0.129 Sum_probs=45.8
Q ss_pred CcchHHHHHHHHHHhcCCC-CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEec
Q 029425 120 FPEVACTVWSTVFMTSHLS-PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIG 190 (193)
Q Consensus 120 ~~~~~~~a~~~l~~~~~~~-~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~ 190 (193)
.|+.....+..| +..++. .|.+++|.|-+..+|.-+..++...|+.|.+.-.....+... -..||.++.
T Consensus 144 ~PcTp~av~~ll-~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T~~l~~~-~~~ADIvv~ 213 (287)
T PRK14176 144 VPCTPHGVIRAL-EEYGVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFTDDLKKY-TLDADILVV 213 (287)
T ss_pred CCCcHHHHHHHH-HHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccCCCHHHH-HhhCCEEEE
Confidence 444444444444 333443 789999999988899999999999999998877544333221 145565554
No 434
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=84.29 E-value=7.1 Score=29.86 Aligned_cols=34 Identities=18% Similarity=0.325 Sum_probs=29.5
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGL 173 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~ 173 (193)
.+.++.|.|- |.+|..+++++...|++|+.+..+
T Consensus 30 ~~~~v~I~G~-G~VG~~~a~~L~~~g~~vv~v~D~ 63 (227)
T cd01076 30 AGARVAIQGF-GNVGSHAARFLHEAGAKVVAVSDS 63 (227)
T ss_pred cCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEECC
Confidence 5789999995 999999999999999999955544
No 435
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=84.24 E-value=3.7 Score=33.43 Aligned_cols=37 Identities=22% Similarity=0.108 Sum_probs=32.5
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcch
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATR 176 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~ 176 (193)
.+.++||.|+ |-+|..++..+...|+ +++++.|+.+.
T Consensus 173 ~~k~vLvIGa-Gem~~l~a~~L~~~g~~~i~v~nRt~~~ 210 (338)
T PRK00676 173 KKASLLFIGY-SEINRKVAYYLQRQGYSRITFCSRQQLT 210 (338)
T ss_pred cCCEEEEEcc-cHHHHHHHHHHHHcCCCEEEEEcCCccc
Confidence 5789999998 9999999999999996 78898888654
No 436
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=84.19 E-value=3.3 Score=28.11 Aligned_cols=34 Identities=6% Similarity=0.103 Sum_probs=26.2
Q ss_pred eEEEEcCCchHHHHHHHHHHHC-CCEEEEEeCCcc
Q 029425 142 SFLVHGGSSGIGTFAIQMGKCQ-GVRVFVTAGLAT 175 (193)
Q Consensus 142 ~vli~ga~g~~G~~~i~~~~~~-g~~v~~~~~~~~ 175 (193)
+|.|.||+|.+|..+++++... .+++..+..++.
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~ 35 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSR 35 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTT
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeecc
Confidence 5889999999999999999884 457665554444
No 437
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=84.18 E-value=11 Score=29.78 Aligned_cols=69 Identities=10% Similarity=0.088 Sum_probs=46.7
Q ss_pred CcchHHHHHHHHHHhcCC-CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEec
Q 029425 120 FPEVACTVWSTVFMTSHL-SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIG 190 (193)
Q Consensus 120 ~~~~~~~a~~~l~~~~~~-~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~ 190 (193)
.|+.....+..|. ..++ =.|.+++|.|-+..+|.-+..++...|++|+...+....++..- ..||.++.
T Consensus 132 ~PcTp~av~~ll~-~~~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t~~L~~~~-~~ADIvI~ 201 (279)
T PRK14178 132 APCTPNGIMTLLH-EYKISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKTENLKAEL-RQADILVS 201 (279)
T ss_pred CCCCHHHHHHHHH-HcCCCCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecChhHHHHHH-hhCCEEEE
Confidence 4444444444443 3333 36899999999889999999999999999998886654433221 35566654
No 438
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=83.82 E-value=3.9 Score=38.07 Aligned_cols=36 Identities=17% Similarity=0.154 Sum_probs=31.7
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc
Q 029425 138 SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA 174 (193)
Q Consensus 138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~ 174 (193)
..+++|.|+|+ |..|++++..+...|.+|+++.+.+
T Consensus 304 ~~gkkVaVIGs-GPAGLsaA~~Lar~G~~VtVfE~~~ 339 (944)
T PRK12779 304 AVKPPIAVVGS-GPSGLINAYLLAVEGFPVTVFEAFH 339 (944)
T ss_pred CCCCeEEEECC-CHHHHHHHHHHHHCCCeEEEEeeCC
Confidence 45899999997 9999999999999999999988643
No 439
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=83.30 E-value=13 Score=29.49 Aligned_cols=58 Identities=12% Similarity=0.020 Sum_probs=41.1
Q ss_pred CcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchH
Q 029425 120 FPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRF 177 (193)
Q Consensus 120 ~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~ 177 (193)
+|+.....+..|....--=.|++++|.|-+..+|.=+..++...|+.|++.-+....+
T Consensus 139 ~PcTp~avi~ll~~y~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T~~l 196 (284)
T PRK14177 139 LPCTPYGMVLLLKEYGIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKTQNL 196 (284)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCH
Confidence 4444444444443322224689999999999999999999999999999877544433
No 440
>PLN02306 hydroxypyruvate reductase
Probab=83.26 E-value=2.7 Score=34.89 Aligned_cols=35 Identities=17% Similarity=0.108 Sum_probs=30.6
Q ss_pred CCCeEEEEcCCchHHHHHHHHHH-HCCCEEEEEeCCc
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGK-CQGVRVFVTAGLA 174 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~-~~g~~v~~~~~~~ 174 (193)
.|.++.|+|- |.+|..+++.++ .+|++|+..+++.
T Consensus 164 ~gktvGIiG~-G~IG~~vA~~l~~~fGm~V~~~d~~~ 199 (386)
T PLN02306 164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQ 199 (386)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCCEEEEECCCC
Confidence 4689999996 999999999985 8999999998764
No 441
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=83.24 E-value=2.8 Score=33.53 Aligned_cols=47 Identities=11% Similarity=0.117 Sum_probs=40.5
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcch-HHHHhhcCCc
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATR-FILCQPFNIR 186 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~-~~~~~~~G~~ 186 (193)
++++|.|+|- |+-|.+..+-+|..|.+|++-.+.... .+.+++-|+.
T Consensus 17 kgK~iaIIGY-GsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~ 64 (338)
T COG0059 17 KGKKVAIIGY-GSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFK 64 (338)
T ss_pred cCCeEEEEec-ChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCE
Confidence 5789999996 999999999999999999988886665 7788888873
No 442
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=83.23 E-value=4.9 Score=24.72 Aligned_cols=33 Identities=30% Similarity=0.488 Sum_probs=28.5
Q ss_pred CCeEEEEcCC-chHHHHHHHHHHHCCCEEEEEeC
Q 029425 140 GESFLVHGGS-SGIGTFAIQMGKCQGVRVFVTAG 172 (193)
Q Consensus 140 ~~~vli~ga~-g~~G~~~i~~~~~~g~~v~~~~~ 172 (193)
++.+||+|++ .+....+.++|+..|..++..-.
T Consensus 32 ~~~~lvhGga~~GaD~iA~~wA~~~gv~~~~~~a 65 (71)
T PF10686_consen 32 PDMVLVHGGAPKGADRIAARWARERGVPVIRFPA 65 (71)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCeeEEeCc
Confidence 6788999998 89999999999999998876653
No 443
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=83.21 E-value=2.5 Score=34.00 Aligned_cols=36 Identities=28% Similarity=0.345 Sum_probs=31.2
Q ss_pred CCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC
Q 029425 137 LSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGL 173 (193)
Q Consensus 137 ~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~ 173 (193)
+.|||++|+. .+|..|+-++.+++++|++|-.+...
T Consensus 89 lePgd~vLv~-~~G~wg~ra~D~~~r~ga~V~~v~~~ 124 (385)
T KOG2862|consen 89 LEPGDNVLVV-STGTWGQRAADCARRYGAEVDVVEAD 124 (385)
T ss_pred cCCCCeEEEE-EechHHHHHHHHHHhhCceeeEEecC
Confidence 5799999995 47999999999999999998877643
No 444
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase. This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.
Probab=83.17 E-value=5 Score=32.53 Aligned_cols=52 Identities=15% Similarity=0.137 Sum_probs=38.2
Q ss_pred CCCeEEEE-c-CCchHHHHHHHHHHHCCCEEEEEeCC-----------cchHHHHhhcCCcEEec
Q 029425 139 PGESFLVH-G-GSSGIGTFAIQMGKCQGVRVFVTAGL-----------ATRFILCQPFNIRVFIG 190 (193)
Q Consensus 139 ~~~~vli~-g-a~g~~G~~~i~~~~~~g~~v~~~~~~-----------~~~~~~~~~~G~~~~~~ 190 (193)
.|.+.++. | ++|+.|.++..+++.+|.+.+++... ..+....+.+|+..++.
T Consensus 64 ~G~~~vvs~ggs~gN~g~alA~~a~~~Gl~~~iv~~~~~~~~~~~~~~~~~~~~~~~~GA~v~~v 128 (337)
T TIGR01274 64 QGCTTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQLSRIMGADVRLD 128 (337)
T ss_pred cCCCEEEECCCCcchHHHHHHHHHHHcCCcEEEEeccCCCccccchhccchHHHHHHcCCEEEEe
Confidence 33445443 3 55899999999999999987777654 35777788999976554
No 445
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=83.15 E-value=7.6 Score=24.52 Aligned_cols=34 Identities=18% Similarity=0.284 Sum_probs=27.7
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHHHCC-CEEEEEeC
Q 029425 138 SPGESFLVHGGSSGIGTFAIQMGKCQG-VRVFVTAG 172 (193)
Q Consensus 138 ~~~~~vli~ga~g~~G~~~i~~~~~~g-~~v~~~~~ 172 (193)
-.+.+++|.|. |.+|..+.+.+...+ .++++..+
T Consensus 21 ~~~~~v~i~G~-G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 21 LKGKTVVVLGA-GEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcC
Confidence 45688999998 999999999999884 57776654
No 446
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=83.10 E-value=4.5 Score=37.85 Aligned_cols=35 Identities=20% Similarity=0.059 Sum_probs=31.1
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC
Q 029425 138 SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGL 173 (193)
Q Consensus 138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~ 173 (193)
..+++|+|+|+ |..|+.++..++..|.+|.++.+.
T Consensus 537 ~tgKkVaIIGg-GPAGLsAA~~Lar~G~~VtV~Ek~ 571 (1019)
T PRK09853 537 GSRKKVAVIGA-GPAGLAAAYFLARAGHPVTVFERE 571 (1019)
T ss_pred CCCCcEEEECC-CHHHHHHHHHHHHcCCeEEEEecc
Confidence 45789999998 999999999999999999998865
No 447
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=83.08 E-value=2.4 Score=36.43 Aligned_cols=35 Identities=20% Similarity=0.134 Sum_probs=30.2
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA 174 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~ 174 (193)
+..+|+|+|| |..|++++..++.+|.+|++....+
T Consensus 14 ~~~~VIVIGA-GiaGLsAArqL~~~G~~V~VLEARd 48 (501)
T KOG0029|consen 14 KKKKVIVIGA-GLAGLSAARQLQDFGFDVLVLEARD 48 (501)
T ss_pred CCCcEEEECC-cHHHHHHHHHHHHcCCceEEEeccC
Confidence 4457899998 9999999999999999999887543
No 448
>PRK08317 hypothetical protein; Provisional
Probab=82.99 E-value=4.7 Score=30.25 Aligned_cols=49 Identities=18% Similarity=0.144 Sum_probs=39.6
Q ss_pred HhcCCCCCCeEEEEcCCchHHHHHHHHHHHC--CCEEEEEeCCcchHHHHhhc
Q 029425 133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQ--GVRVFVTAGLATRFILCQPF 183 (193)
Q Consensus 133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~--g~~v~~~~~~~~~~~~~~~~ 183 (193)
+...++++++||-.|+ |. |..+..+++.. +.+++.++.+++..+.+++.
T Consensus 13 ~~~~~~~~~~vLdiG~-G~-G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~ 63 (241)
T PRK08317 13 ELLAVQPGDRVLDVGC-GP-GNDARELARRVGPEGRVVGIDRSEAMLALAKER 63 (241)
T ss_pred HHcCCCCCCEEEEeCC-CC-CHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH
Confidence 5567888999999986 54 88899999887 36899999998887777654
No 449
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=82.95 E-value=4 Score=35.36 Aligned_cols=34 Identities=24% Similarity=0.325 Sum_probs=30.8
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGL 173 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~ 173 (193)
.|+++.|.|- |.+|...++.++.+|++|+...+.
T Consensus 137 ~gktvgIiG~-G~IG~~vA~~l~~fG~~V~~~d~~ 170 (525)
T TIGR01327 137 YGKTLGVIGL-GRIGSIVAKRAKAFGMKVLAYDPY 170 (525)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCEEEEECCC
Confidence 4679999996 999999999999999999999874
No 450
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=82.64 E-value=5.5 Score=30.83 Aligned_cols=33 Identities=18% Similarity=0.314 Sum_probs=29.4
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEe
Q 029425 138 SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTA 171 (193)
Q Consensus 138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~ 171 (193)
-.+.++.|.|. |.+|..+++.+..+|++++.+.
T Consensus 30 l~g~~v~IqGf-G~VG~~~a~~l~~~Ga~vv~vs 62 (244)
T PF00208_consen 30 LEGKRVAIQGF-GNVGSHAARFLAELGAKVVAVS 62 (244)
T ss_dssp STTCEEEEEES-SHHHHHHHHHHHHTTEEEEEEE
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEe
Confidence 36789999997 9999999999999999998873
No 451
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=82.62 E-value=2.4 Score=35.08 Aligned_cols=34 Identities=18% Similarity=0.207 Sum_probs=29.3
Q ss_pred CeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425 141 ESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT 175 (193)
Q Consensus 141 ~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~ 175 (193)
-.|+|.|+ |..|++++..+...|.+|.++.+.+.
T Consensus 19 ~dV~IvGa-G~aGl~~A~~L~~~G~~v~v~E~~~~ 52 (415)
T PRK07364 19 YDVAIVGG-GIVGLTLAAALKDSGLRIALIEAQPA 52 (415)
T ss_pred cCEEEECc-CHHHHHHHHHHhcCCCEEEEEecCCc
Confidence 46899998 99999999888889999999987543
No 452
>PLN02735 carbamoyl-phosphate synthase
Probab=82.58 E-value=3.2 Score=39.24 Aligned_cols=50 Identities=20% Similarity=0.266 Sum_probs=34.5
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEcCCchH-----------HHHHHHHHHHCCCEEEEEeCCcc
Q 029425 125 CTVWSTVFMTSHLSPGESFLVHGGSSGI-----------GTFAIQMGKCQGVRVFVTAGLAT 175 (193)
Q Consensus 125 ~~a~~~l~~~~~~~~~~~vli~ga~g~~-----------G~~~i~~~~~~g~~v~~~~~~~~ 175 (193)
..+|.+-.....-+.=++|||+|+ |.+ |..++..++.+|++|+.+..+++
T Consensus 8 ~~~~~~~~~~~~~~~~kkVLiiGs-G~~~igqa~e~d~SG~q~~kaLke~G~~Vi~vd~np~ 68 (1102)
T PLN02735 8 TRAWSAATKAGKRTDLKKIMILGA-GPIVIGQACEFDYSGTQACKALKEEGYEVVLINSNPA 68 (1102)
T ss_pred eecccccccCCcccCCCEEEEECC-CccccccceeecchHHHHHHHHHHcCCEEEEEeCCcc
Confidence 445655532222222368999997 763 55689999999999999998663
No 453
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=82.41 E-value=2.8 Score=35.60 Aligned_cols=34 Identities=21% Similarity=0.182 Sum_probs=30.3
Q ss_pred CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc
Q 029425 140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA 174 (193)
Q Consensus 140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~ 174 (193)
..+|+|+|| |..|++++..++..|.++++..+++
T Consensus 10 ~~~VaIIGA-G~aGL~aA~~l~~~G~~v~vfE~~~ 43 (461)
T PLN02172 10 SQHVAVIGA-GAAGLVAARELRREGHTVVVFEREK 43 (461)
T ss_pred CCCEEEECC-cHHHHHHHHHHHhcCCeEEEEecCC
Confidence 467999998 9999999999999999999998764
No 454
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=82.11 E-value=4 Score=33.61 Aligned_cols=34 Identities=18% Similarity=0.245 Sum_probs=29.3
Q ss_pred CeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425 141 ESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT 175 (193)
Q Consensus 141 ~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~ 175 (193)
.+|+|+|+ |.+|...+..++.+|+++++++.+++
T Consensus 13 ~~ilIiG~-g~~~~~~~~a~~~~G~~v~~~~~~~~ 46 (395)
T PRK09288 13 TRVMLLGS-GELGKEVAIEAQRLGVEVIAVDRYAN 46 (395)
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 48999997 89999999999999999998887654
No 455
>PRK12831 putative oxidoreductase; Provisional
Probab=81.97 E-value=3.4 Score=35.10 Aligned_cols=35 Identities=20% Similarity=0.140 Sum_probs=30.8
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC
Q 029425 138 SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGL 173 (193)
Q Consensus 138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~ 173 (193)
+.+..|+|+|+ |..|+.++..++..|.+|+++.+.
T Consensus 138 ~~~~~V~IIG~-GpAGl~aA~~l~~~G~~V~v~e~~ 172 (464)
T PRK12831 138 KKGKKVAVIGS-GPAGLTCAGDLAKMGYDVTIFEAL 172 (464)
T ss_pred CCCCEEEEECc-CHHHHHHHHHHHhCCCeEEEEecC
Confidence 56789999998 999999999999999999888753
No 456
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=81.84 E-value=6.6 Score=31.73 Aligned_cols=49 Identities=10% Similarity=0.171 Sum_probs=35.2
Q ss_pred CeEEEEc-CCchHHHHHHHHHHHCCCEEEEEeCCc-----------chHHHHhhcCCcEEe
Q 029425 141 ESFLVHG-GSSGIGTFAIQMGKCQGVRVFVTAGLA-----------TRFILCQPFNIRVFI 189 (193)
Q Consensus 141 ~~vli~g-a~g~~G~~~i~~~~~~g~~v~~~~~~~-----------~~~~~~~~~G~~~~~ 189 (193)
++|+-.| ++|+.|.++..+++.+|.+++++.... .+...++.+|+..+.
T Consensus 65 ~~vvt~g~s~gN~g~alA~~a~~~G~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~Ga~vi~ 125 (331)
T PRK03910 65 DTLITAGAIQSNHARQTAAAAAKLGLKCVLLLENPVPTEAENYLANGNVLLDDLFGAEIHV 125 (331)
T ss_pred CEEEEcCcchhHHHHHHHHHHHHhCCcEEEEEcCCCCcccccccCCCcHHHHHHcCCEEEE
Confidence 4554433 247999999999999999888777633 234678889996544
No 457
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=81.76 E-value=4.6 Score=32.66 Aligned_cols=48 Identities=10% Similarity=0.045 Sum_probs=34.8
Q ss_pred CeEEE-EcCCchHHHHHHHHHHHCCCEEEEEeCCcc----hHHHHhhcCCcEE
Q 029425 141 ESFLV-HGGSSGIGTFAIQMGKCQGVRVFVTAGLAT----RFILCQPFNIRVF 188 (193)
Q Consensus 141 ~~vli-~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~----~~~~~~~~G~~~~ 188 (193)
++|+. -+++|+.|+++..+++.+|.+++++.+... +....+.+|+...
T Consensus 71 ~~vv~~~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~~Ga~v~ 123 (329)
T PRK14045 71 DVVITVGAVHSNHAFVTGLAAKKLGLDAVLVLRGKEELKGNYLLDKIMGIETR 123 (329)
T ss_pred CEEEEeCccHHHHHHHHHHHHHHcCCeEEEEEeCCCCCCcCHHHHHHCCCEEE
Confidence 44443 366699999999999999999888876532 3334577998643
No 458
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=81.68 E-value=17 Score=29.16 Aligned_cols=55 Identities=15% Similarity=0.082 Sum_probs=39.3
Q ss_pred CcchHHHHHHHHHHhcCC-CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425 120 FPEVACTVWSTVFMTSHL-SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT 175 (193)
Q Consensus 120 ~~~~~~~a~~~l~~~~~~-~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~ 175 (193)
.|+.....+..| +..++ -.|++++|.|-+..+|.=+..++...|++|++.-+...
T Consensus 138 ~PcTp~aii~lL-~~~~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~T~ 193 (297)
T PRK14186 138 RSCTPAGVMRLL-RSQQIDIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSRTQ 193 (297)
T ss_pred CCCCHHHHHHHH-HHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCCC
Confidence 344444444444 33333 36899999999999999999999999999988765443
No 459
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=81.68 E-value=3.1 Score=28.00 Aligned_cols=38 Identities=11% Similarity=0.092 Sum_probs=31.0
Q ss_pred CeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHH
Q 029425 141 ESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFIL 179 (193)
Q Consensus 141 ~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~ 179 (193)
++|||.|. |.++.-+++-++.+|++++++..+++....
T Consensus 3 kkvLIanr-Geia~r~~ra~r~~Gi~tv~v~s~~d~~s~ 40 (110)
T PF00289_consen 3 KKVLIANR-GEIAVRIIRALRELGIETVAVNSNPDTVST 40 (110)
T ss_dssp SEEEESS--HHHHHHHHHHHHHTTSEEEEEEEGGGTTGH
T ss_pred CEEEEECC-CHHHHHHHHHHHHhCCcceeccCchhcccc
Confidence 57899885 999999999999999998888877776543
No 460
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=81.67 E-value=18 Score=28.76 Aligned_cols=56 Identities=14% Similarity=0.010 Sum_probs=40.5
Q ss_pred CcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425 120 FPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT 175 (193)
Q Consensus 120 ~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~ 175 (193)
+|+.....+..|....---.|++++|.|-+..+|.=+..++...|++|++.-+...
T Consensus 138 ~PcTp~aii~lL~~y~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T~ 193 (282)
T PRK14180 138 ESCTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTT 193 (282)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCCC
Confidence 45554555544533322236899999999999999999999999999988765433
No 461
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=81.39 E-value=3.3 Score=33.45 Aligned_cols=34 Identities=15% Similarity=0.094 Sum_probs=30.1
Q ss_pred CCCeEEEEcCCchHHHHHHHHHH-HCCCEEEEEeCC
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGK-CQGVRVFVTAGL 173 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~-~~g~~v~~~~~~ 173 (193)
.|+++.|+|- |.+|...++.++ .+|++|+...+.
T Consensus 144 ~gktvGIiG~-G~IG~~va~~l~~~fgm~V~~~~~~ 178 (323)
T PRK15409 144 HHKTLGIVGM-GRIGMALAQRAHFGFNMPILYNARR 178 (323)
T ss_pred CCCEEEEEcc-cHHHHHHHHHHHhcCCCEEEEECCC
Confidence 4689999996 999999999998 899999988765
No 462
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=81.08 E-value=7.9 Score=29.11 Aligned_cols=48 Identities=19% Similarity=0.173 Sum_probs=37.7
Q ss_pred HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCC--CEEEEEeCCcchHHHHhh
Q 029425 133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQG--VRVFVTAGLATRFILCQP 182 (193)
Q Consensus 133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g--~~v~~~~~~~~~~~~~~~ 182 (193)
....++++++||-.| ++.|..+..+++..+ .+|+.+..+++..+.+++
T Consensus 70 ~~l~~~~g~~VLdIG--~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~ 119 (212)
T PRK13942 70 ELLDLKEGMKVLEIG--TGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKK 119 (212)
T ss_pred HHcCCCCcCEEEEEC--CcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHH
Confidence 456788999999998 456777788887765 589999999887776654
No 463
>cd00320 cpn10 Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts. It forms heptameric rings with a dome-like structure, forming a lid to the large cavity of the tetradecameric cpn60 cylinder and thereby tightly regulating release and binding of proteins to the cpn60 surface.
Probab=81.05 E-value=4.6 Score=26.27 Aligned_cols=25 Identities=32% Similarity=0.375 Sum_probs=19.8
Q ss_pred eEEEEEEecCCC---------CCCCCCCEEEEEc
Q 029425 65 CSGTILSVGKNV---------SRWKVGDQVCALL 89 (193)
Q Consensus 65 ~~G~V~~vG~~~---------~~~~~G~~V~~~~ 89 (193)
..|+|+++|++. ..+++||+|+.-.
T Consensus 35 ~~g~VvAVG~g~~~~~g~~~~~~vk~GD~Vl~~~ 68 (93)
T cd00320 35 QEGKVVAVGPGRRNENGERVPLSVKVGDKVLFPK 68 (93)
T ss_pred eEEEEEEECCCeECCCCCCccccccCCCEEEECC
Confidence 479999999973 3589999997543
No 464
>PRK10537 voltage-gated potassium channel; Provisional
Probab=80.88 E-value=7.7 Score=32.34 Aligned_cols=60 Identities=7% Similarity=0.047 Sum_probs=46.3
Q ss_pred HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCC--CEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425 133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQG--VRVFVTAGLATRFILCQPFNIRVFIGFG 192 (193)
Q Consensus 133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g--~~v~~~~~~~~~~~~~~~~G~~~~~~~~ 192 (193)
+..+++.-+.+++...+-..-..++..+|.++ .++++.+.+++..+.+++.|+|.++++.
T Consensus 296 ~~AgI~~A~aVI~~t~dD~~Nl~ivL~ar~l~p~~kIIa~v~~~~~~~~L~~~GaD~VIsp~ 357 (393)
T PRK10537 296 KKAGAARARAILALRDNDADNAFVVLAAKEMSSDVKTVAAVNDSKNLEKIKRVHPDMIFSPQ 357 (393)
T ss_pred HhcCcccCCEEEEcCCChHHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHhcCCCEEECHH
Confidence 56677777777776554444566777788776 5799889899999999999999999764
No 465
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=80.87 E-value=3.9 Score=35.87 Aligned_cols=37 Identities=24% Similarity=0.287 Sum_probs=32.2
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425 138 SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT 175 (193)
Q Consensus 138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~ 175 (193)
....+|.|+|+ |.+|...++.++.+|.+|++++.+++
T Consensus 20 ~~~k~IgIIGg-Gqlg~mla~aA~~lG~~Vi~ld~~~~ 56 (577)
T PLN02948 20 VSETVVGVLGG-GQLGRMLCQAASQMGIKVKVLDPLED 56 (577)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 34578999997 99999999999999999999987554
No 466
>PRK12483 threonine dehydratase; Reviewed
Probab=80.75 E-value=7.3 Score=33.75 Aligned_cols=46 Identities=7% Similarity=0.021 Sum_probs=37.5
Q ss_pred EEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425 144 LVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI 189 (193)
Q Consensus 144 li~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~ 189 (193)
+|..++|+.|+.+...++.+|++.+++.. +..|.+..+.+|+..++
T Consensus 88 VV~aSaGNha~gvA~aA~~lGi~~~IvmP~~tp~~Kv~~~r~~GAeVil 136 (521)
T PRK12483 88 VITASAGNHAQGVALAAARLGVKAVIVMPRTTPQLKVDGVRAHGGEVVL 136 (521)
T ss_pred EEEECCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEE
Confidence 56666799999999999999998777665 45578888999996654
No 467
>PTZ00414 10 kDa heat shock protein; Provisional
Probab=80.72 E-value=5.5 Score=26.35 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=18.8
Q ss_pred EEEEEEecCCCC----CCCCCCEEEEE
Q 029425 66 SGTILSVGKNVS----RWKVGDQVCAL 88 (193)
Q Consensus 66 ~G~V~~vG~~~~----~~~~G~~V~~~ 88 (193)
-|.|+++|++.. .+++||+|+.-
T Consensus 46 ~g~VvAVG~G~~~~~~~Vk~GD~Vl~~ 72 (100)
T PTZ00414 46 EGTVVAVAAATKDWTPTVKVGDTVLLP 72 (100)
T ss_pred eeEEEEECCCCccccceecCCCEEEEc
Confidence 599999999853 48999999754
No 468
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=80.66 E-value=15 Score=29.24 Aligned_cols=55 Identities=15% Similarity=0.115 Sum_probs=39.8
Q ss_pred CcchHHHHHHHHHHhcCC-CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425 120 FPEVACTVWSTVFMTSHL-SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT 175 (193)
Q Consensus 120 ~~~~~~~a~~~l~~~~~~-~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~ 175 (193)
+|+.....+..|. ..++ -.|.+++|.|-+..+|.-+..++...|+.|++.-....
T Consensus 138 ~PcTp~av~~lL~-~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~t~ 193 (284)
T PRK14190 138 LPCTPHGILELLK-EYNIDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKTK 193 (284)
T ss_pred CCCCHHHHHHHHH-HcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCCch
Confidence 3444444444443 3333 46899999999999999999999999999988754433
No 469
>PLN02550 threonine dehydratase
Probab=80.62 E-value=9.6 Score=33.55 Aligned_cols=47 Identities=4% Similarity=0.048 Sum_probs=37.5
Q ss_pred EEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEec
Q 029425 144 LVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFIG 190 (193)
Q Consensus 144 li~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~~ 190 (193)
+|..++|+-|+.+...++.+|++.+++.. +..|.+..+.+|+..++.
T Consensus 160 VV~aSaGNhAqgvA~aA~~lGika~IvmP~~tp~~Kv~~~r~~GAeVvl~ 209 (591)
T PLN02550 160 VICSSAGNHAQGVALSAQRLGCDAVIAMPVTTPEIKWQSVERLGATVVLV 209 (591)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEe
Confidence 55567799999999999999998777765 445778888999976653
No 470
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=80.40 E-value=9 Score=33.53 Aligned_cols=59 Identities=15% Similarity=0.079 Sum_probs=41.5
Q ss_pred HccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHH--HHHHHHHCCCEEEEEeCCcch
Q 029425 117 AAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTF--AIQMGKCQGVRVFVTAGLATR 176 (193)
Q Consensus 117 aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~--~i~~~~~~g~~v~~~~~~~~~ 176 (193)
=.....++.|...++.....+-.|.++.|.|+ .+.|-. ..++++...+.|++.+..-+|
T Consensus 203 R~~~~~PL~TG~RvID~lfPi~kGqr~~I~gg-~G~GKT~l~~~lak~s~aDviVyvg~GER 263 (591)
T TIGR01042 203 KLPANTPLLTGQRVLDALFPCVQGGTTAIPGA-FGCGKTVISQSLSKYSNSDAIVYVGCGER 263 (591)
T ss_pred ccCCCCccccchhhhhhccchhcCCeEEEEcC-CCcCHHHHHHHHHhccCcCEEEEEEEeec
Confidence 33455677888888888888999999999997 666754 345666666766655554443
No 471
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=80.02 E-value=21 Score=28.46 Aligned_cols=54 Identities=13% Similarity=0.099 Sum_probs=38.7
Q ss_pred CcchHHHHHHHHHHhcCC-CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc
Q 029425 120 FPEVACTVWSTVFMTSHL-SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA 174 (193)
Q Consensus 120 ~~~~~~~a~~~l~~~~~~-~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~ 174 (193)
.|+.....+..|. ..++ -.|++++|.|-+..+|.=+..++...|+.|++.-+..
T Consensus 139 ~PcTp~av~~lL~-~y~i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~T 193 (288)
T PRK14171 139 IPCTALGCLAVIK-KYEPNLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSKT 193 (288)
T ss_pred cCCCHHHHHHHHH-HhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC
Confidence 4444444444443 3333 3688999999999999999999999999988766433
No 472
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=79.96 E-value=7.1 Score=36.42 Aligned_cols=34 Identities=24% Similarity=0.241 Sum_probs=30.5
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGL 173 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~ 173 (193)
.|++|+|+|+ |.+|.-++..++..|++|+++.+.
T Consensus 446 ~Gk~VvVIGG-G~tA~D~A~ta~R~Ga~Vtlv~rr 479 (944)
T PRK12779 446 KGKEVFVIGG-GNTAMDAARTAKRLGGNVTIVYRR 479 (944)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEEec
Confidence 5789999998 999999999999999998888764
No 473
>KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism]
Probab=79.89 E-value=3.5 Score=32.65 Aligned_cols=53 Identities=11% Similarity=0.161 Sum_probs=41.2
Q ss_pred HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCc
Q 029425 133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIR 186 (193)
Q Consensus 133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~ 186 (193)
+.+.+.+|. .++-|.+|..|.....+++++|++-.+.-. +.+|.+.++.+||.
T Consensus 93 e~GkL~~gg-~v~EGtaGsTgIslA~v~~a~Gyk~~I~mPddqs~eK~~ile~LGA~ 148 (391)
T KOG1481|consen 93 EKGKLVRGG-TVVEGTAGSTGISLAHVARALGYKCHIYMPDDQSQEKSDILEFLGAE 148 (391)
T ss_pred HcCCcccCc-eEEecCCCccchhHHHhhhhcCcceEEECCChHHHHHHHHHHHhcce
Confidence 567788884 556688899999999999999986554443 56688888899983
No 474
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=79.82 E-value=4.5 Score=29.64 Aligned_cols=37 Identities=16% Similarity=0.092 Sum_probs=25.5
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcch
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATR 176 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~ 176 (193)
++++|+|.|+ |..+.-++..+...|.+|.++.|++.+
T Consensus 166 ~~k~V~VVG~-G~SA~d~a~~l~~~g~~V~~~~R~~~~ 202 (203)
T PF13738_consen 166 KGKRVVVVGG-GNSAVDIAYALAKAGKSVTLVTRSPIW 202 (203)
T ss_dssp TTSEEEEE---SHHHHHHHHHHTTTCSEEEEEESS---
T ss_pred CCCcEEEEcC-hHHHHHHHHHHHhhCCEEEEEecCCCC
Confidence 5699999997 777766666666668899999988643
No 475
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=79.70 E-value=22 Score=28.53 Aligned_cols=56 Identities=14% Similarity=0.025 Sum_probs=40.5
Q ss_pred CcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425 120 FPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT 175 (193)
Q Consensus 120 ~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~ 175 (193)
+|+.....+..|....--=.|.+++|.|-+..+|.=+..++...|++|++.-....
T Consensus 147 ~PcTp~avi~lL~~~~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~T~ 202 (299)
T PLN02516 147 LPCTPKGCLELLSRSGIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSRTP 202 (299)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCCC
Confidence 45555555544533322235899999999999999999999999999988865433
No 476
>PLN02712 arogenate dehydrogenase
Probab=79.66 E-value=6.8 Score=35.05 Aligned_cols=45 Identities=16% Similarity=0.099 Sum_probs=36.2
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCC
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNI 185 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~ 185 (193)
.+.+|.|+|. |.+|...+..++..|.+|++..++.+. +.++++|+
T Consensus 368 ~~~kIgIIGl-G~mG~slA~~L~~~G~~V~~~dr~~~~-~~a~~~Gv 412 (667)
T PLN02712 368 SKLKIAIVGF-GNFGQFLAKTMVKQGHTVLAYSRSDYS-DEAQKLGV 412 (667)
T ss_pred CCCEEEEEec-CHHHHHHHHHHHHCcCEEEEEECChHH-HHHHHcCC
Confidence 4568999996 999999999999899999999887543 45556665
No 477
>PRK08605 D-lactate dehydrogenase; Validated
Probab=79.31 E-value=4.3 Score=32.94 Aligned_cols=36 Identities=19% Similarity=0.135 Sum_probs=30.5
Q ss_pred CCCeEEEEcCCchHHHHHHHHH-HHCCCEEEEEeCCcc
Q 029425 139 PGESFLVHGGSSGIGTFAIQMG-KCQGVRVFVTAGLAT 175 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~-~~~g~~v~~~~~~~~ 175 (193)
.|.+|.|+|. |.+|...++.+ +.+|++|+...++..
T Consensus 145 ~g~~VgIIG~-G~IG~~vA~~L~~~~g~~V~~~d~~~~ 181 (332)
T PRK08605 145 KDLKVAVIGT-GRIGLAVAKIFAKGYGSDVVAYDPFPN 181 (332)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCCEEEEECCCcc
Confidence 4779999997 99999988887 678999999887654
No 478
>KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=79.26 E-value=6.2 Score=31.46 Aligned_cols=40 Identities=20% Similarity=0.261 Sum_probs=33.6
Q ss_pred hcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC
Q 029425 134 TSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGL 173 (193)
Q Consensus 134 ~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~ 173 (193)
+.....+-+|+|+|+.|-+|.-++.-+...|-+||+++--
T Consensus 21 ~~~p~~~lrI~itGgaGFIgSHLvdkLm~egh~VIa~Dn~ 60 (350)
T KOG1429|consen 21 QVKPSQNLRILITGGAGFIGSHLVDKLMTEGHEVIALDNY 60 (350)
T ss_pred cccCCCCcEEEEecCcchHHHHHHHHHHhcCCeEEEEecc
Confidence 3344556899999999999999999999999899998853
No 479
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=79.22 E-value=9.3 Score=30.94 Aligned_cols=52 Identities=21% Similarity=0.157 Sum_probs=39.7
Q ss_pred HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC--EEEEEeCCcchHHHHh----hcCCc
Q 029425 133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV--RVFVTAGLATRFILCQ----PFNIR 186 (193)
Q Consensus 133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~--~v~~~~~~~~~~~~~~----~~G~~ 186 (193)
....++++++||-.|+ | .|..++.+++..+. .|+.+..+++..+.++ ++|.+
T Consensus 74 ~~L~i~~g~~VLDIG~-G-tG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~ 131 (322)
T PRK13943 74 EWVGLDKGMRVLEIGG-G-TGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIE 131 (322)
T ss_pred HhcCCCCCCEEEEEeC-C-ccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC
Confidence 4456789999999996 5 59999999998763 6999998888665554 35654
No 480
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=79.12 E-value=4 Score=36.43 Aligned_cols=37 Identities=24% Similarity=0.152 Sum_probs=32.4
Q ss_pred CCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc
Q 029425 137 LSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA 174 (193)
Q Consensus 137 ~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~ 174 (193)
.++..+|+|.|+ |..|++++..++..|++|.++.+.+
T Consensus 78 ~~~~~~VlIVGg-GIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 78 KKKKSRVLVAGG-GIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred ccCCCCEEEECC-CHHHHHHHHHHHhcCCeEEEEeccc
Confidence 366778999998 9999999999999999999998754
No 481
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=79.07 E-value=6.6 Score=31.34 Aligned_cols=50 Identities=12% Similarity=0.117 Sum_probs=36.3
Q ss_pred CCeEEEE-c-CCchHHHHHHHHHHHCCCEEEEEeCCc----chHHHHhhcCCcEEe
Q 029425 140 GESFLVH-G-GSSGIGTFAIQMGKCQGVRVFVTAGLA----TRFILCQPFNIRVFI 189 (193)
Q Consensus 140 ~~~vli~-g-a~g~~G~~~i~~~~~~g~~v~~~~~~~----~~~~~~~~~G~~~~~ 189 (193)
|.+.+|. | ++|+.|.++..+++.+|.+++++.+.. .+...++.+|+..++
T Consensus 55 g~~~vv~~g~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~~Ga~v~~ 110 (311)
T TIGR01275 55 GADTVITVGAIQSNHARATALAAKKLGLDAVLVLREKEELNGNLLLDKLMGAETRV 110 (311)
T ss_pred CCCEEEEcCCchhHHHHHHHHHHHHhCCceEEEecCCccCCCCHHHHHHcCCEEEE
Confidence 3344444 3 458999999999999999988888753 234556889996543
No 482
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=79.05 E-value=18 Score=28.70 Aligned_cols=54 Identities=9% Similarity=0.042 Sum_probs=38.7
Q ss_pred CcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC
Q 029425 120 FPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGL 173 (193)
Q Consensus 120 ~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~ 173 (193)
+|+.....+..|....---.|++++|.|-+..+|.=+..++...|+.|++.-+.
T Consensus 136 ~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~ 189 (282)
T PRK14169 136 VASTPYGIMALLDAYDIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSK 189 (282)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCC
Confidence 444444444444322222368999999999999999999999999999877543
No 483
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=79.01 E-value=5 Score=32.60 Aligned_cols=37 Identities=24% Similarity=0.300 Sum_probs=31.6
Q ss_pred CCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc
Q 029425 137 LSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA 174 (193)
Q Consensus 137 ~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~ 174 (193)
.+.+.+|+|.|+ |..|+.++..++..|.+|+++.+.+
T Consensus 15 ~~~~~~VvIIG~-G~aGl~aA~~l~~~g~~v~lie~~~ 51 (352)
T PRK12770 15 PPTGKKVAIIGA-GPAGLAAAGYLACLGYEVHVYDKLP 51 (352)
T ss_pred CCCCCEEEEECc-CHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 456789999998 9999999999888999999888753
No 484
>PLN02712 arogenate dehydrogenase
Probab=78.79 E-value=5.5 Score=35.59 Aligned_cols=44 Identities=14% Similarity=0.187 Sum_probs=35.6
Q ss_pred CeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCc
Q 029425 141 ESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIR 186 (193)
Q Consensus 141 ~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~ 186 (193)
.+|.|+|. |.+|...+..++..|.+|++++++..+ ..++++|+.
T Consensus 53 ~kIgIIG~-G~mG~slA~~L~~~G~~V~~~dr~~~~-~~A~~~Gv~ 96 (667)
T PLN02712 53 LKIAIIGF-GNYGQFLAKTLISQGHTVLAHSRSDHS-LAARSLGVS 96 (667)
T ss_pred CEEEEEcc-CHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHHHcCCE
Confidence 57999996 999999999999889999999887544 456667753
No 485
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=78.23 E-value=5 Score=33.89 Aligned_cols=35 Identities=23% Similarity=0.115 Sum_probs=30.5
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC
Q 029425 138 SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGL 173 (193)
Q Consensus 138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~ 173 (193)
..+.+|+|+|+ |..|+.++..++..|.+|.++.+.
T Consensus 131 ~~~~~V~IIG~-G~aGl~aA~~l~~~G~~V~vie~~ 165 (449)
T TIGR01316 131 STHKKVAVIGA-GPAGLACASELAKAGHSVTVFEAL 165 (449)
T ss_pred CCCCEEEEECc-CHHHHHHHHHHHHCCCcEEEEecC
Confidence 35678999997 999999999999999999988864
No 486
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=78.11 E-value=9.9 Score=30.80 Aligned_cols=49 Identities=10% Similarity=0.148 Sum_probs=35.5
Q ss_pred CeEEEEc-CCchHHHHHHHHHHHCCCEEEEEeCC-----------cchHHHHhhcCCcEEe
Q 029425 141 ESFLVHG-GSSGIGTFAIQMGKCQGVRVFVTAGL-----------ATRFILCQPFNIRVFI 189 (193)
Q Consensus 141 ~~vli~g-a~g~~G~~~i~~~~~~g~~v~~~~~~-----------~~~~~~~~~~G~~~~~ 189 (193)
++|+..| ++|+.|.++..+++.+|.+++++... ..+...++.+|+..++
T Consensus 68 ~~vvs~G~s~GN~g~alA~aa~~~G~~~~iv~~~~~p~~~~~~~~~~~~~~~~~~GA~v~~ 128 (337)
T PRK12390 68 DTLVSIGGVQSNHTRQVAAVAAHLGMKCVLVQENWVNYEDAVYDRVGNILLSRIMGADVRL 128 (337)
T ss_pred CEEEEeCCCccHHHHHHHHHHHHcCCeEEEEeCCCCCCccchhhccccHHHHHHCCCEEEE
Confidence 4444444 55899999999999999998887532 1245577889996554
No 487
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=78.10 E-value=12 Score=29.56 Aligned_cols=53 Identities=11% Similarity=0.017 Sum_probs=40.1
Q ss_pred CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc-----hHHHHhh-cCCcEEecCC
Q 029425 140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT-----RFILCQP-FNIRVFIGFG 192 (193)
Q Consensus 140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~-----~~~~~~~-~G~~~~~~~~ 192 (193)
..++.|.|++|.+++..+.++...+++...+-|..+ ++.++++ +|.+.+.+.+
T Consensus 167 qatvaivGa~G~Ia~~Iar~la~~~~~~~ll~r~aea~~rq~l~~l~e~~~~~~i~s~d 225 (351)
T COG5322 167 QATVAIVGATGDIASAIARWLAPKVGVKELLLRDAEARNRQRLTLLQEELGRGKIMSLD 225 (351)
T ss_pred HCeEEEecCCchHHHHHHHHhccccCEEEEecccHHhhhhhhhhhcccccCCCeeeecc
Confidence 458899999999999999999988888877775443 4455554 7887766543
No 488
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=77.98 E-value=4.9 Score=31.30 Aligned_cols=33 Identities=18% Similarity=0.071 Sum_probs=27.8
Q ss_pred CeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc
Q 029425 141 ESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA 174 (193)
Q Consensus 141 ~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~ 174 (193)
-.|+|.|+ |..|+++...+...|.+|.++.+..
T Consensus 26 ~DVvIVGg-GpAGl~AA~~la~~G~~V~liEk~~ 58 (257)
T PRK04176 26 VDVAIVGA-GPSGLTAAYYLAKAGLKVAVFERKL 58 (257)
T ss_pred CCEEEECc-cHHHHHHHHHHHhCCCeEEEEecCC
Confidence 34888898 9999998888888899999998754
No 489
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=77.90 E-value=7.8 Score=35.10 Aligned_cols=55 Identities=15% Similarity=0.126 Sum_probs=0.0
Q ss_pred CCCCCeEEEEcCCchHHHHHHHHHHHCCCE-EEEEeCCc--------chHHHHhhcCCcEEecCC
Q 029425 137 LSPGESFLVHGGSSGIGTFAIQMGKCQGVR-VFVTAGLA--------TRFILCQPFNIRVFIGFG 192 (193)
Q Consensus 137 ~~~~~~vli~ga~g~~G~~~i~~~~~~g~~-v~~~~~~~--------~~~~~~~~~G~~~~~~~~ 192 (193)
...|++|+|+|+ |.+|.-++..+..+|++ |+++.+.+ +..+.+++.|.....+..
T Consensus 567 ~~~gk~VvVIGg-G~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~~~~e~~~~~~~GV~i~~~~~ 630 (752)
T PRK12778 567 IKFGKKVAVVGG-GNTAMDSARTAKRLGAERVTIVYRRSEEEMPARLEEVKHAKEEGIEFLTLHN 630 (752)
T ss_pred ccCCCcEEEECC-cHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHcCCEEEecCc
No 490
>PRK00364 groES co-chaperonin GroES; Reviewed
Probab=77.83 E-value=6.1 Score=25.84 Aligned_cols=25 Identities=32% Similarity=0.368 Sum_probs=19.4
Q ss_pred eEEEEEEecCCCC---------CCCCCCEEEEEc
Q 029425 65 CSGTILSVGKNVS---------RWKVGDQVCALL 89 (193)
Q Consensus 65 ~~G~V~~vG~~~~---------~~~~G~~V~~~~ 89 (193)
..|+|+++|++.. .+++||+|+.-.
T Consensus 36 ~~G~VvaVG~G~~~~~G~~~~~~vk~GD~Vlf~~ 69 (95)
T PRK00364 36 QEGEVVAVGPGRRLDNGERVPLDVKVGDKVLFGK 69 (95)
T ss_pred ceEEEEEECCCeECCCCCEeecccCCCCEEEEcC
Confidence 3699999999642 489999997543
No 491
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme. This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found.
Probab=77.63 E-value=12 Score=31.41 Aligned_cols=48 Identities=17% Similarity=0.140 Sum_probs=34.9
Q ss_pred eEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC------cchHHHHhhcCCcEEe
Q 029425 142 SFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGL------ATRFILCQPFNIRVFI 189 (193)
Q Consensus 142 ~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~------~~~~~~~~~~G~~~~~ 189 (193)
++++..++|+.|.++...++.+|.++.++... ..|...++.+|+..+.
T Consensus 119 ~~vtetssGN~G~alA~aaa~~Gl~~~V~mp~~s~~~k~~k~~~m~~~GA~Vi~ 172 (419)
T TIGR01415 119 RLVTETGAGQWGSALSLAGALFGLECKVFMVRVSFNQKPYRKYLMELYGAEVIP 172 (419)
T ss_pred eEEEecCchHHHHHHHHHHHHcCCcEEEEEeCCCcccCHHHHHHHHHcCCEEEE
Confidence 45554345999999999999999875554432 2566788899996554
No 492
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=77.48 E-value=6.4 Score=32.54 Aligned_cols=36 Identities=22% Similarity=0.230 Sum_probs=30.7
Q ss_pred CCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC
Q 029425 137 LSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGL 173 (193)
Q Consensus 137 ~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~ 173 (193)
+.++++++|.|+ |.+|.-++..++..|.+|.++.+.
T Consensus 141 ~~~~~~vvViGg-G~ig~E~A~~l~~~g~~Vtlv~~~ 176 (396)
T PRK09754 141 LQPERSVVIVGA-GTIGLELAASATQRRCKVTVIELA 176 (396)
T ss_pred hhcCCeEEEECC-CHHHHHHHHHHHHcCCeEEEEecC
Confidence 456789999997 999999888888999999988764
No 493
>PRK14533 groES co-chaperonin GroES; Provisional
Probab=77.41 E-value=8.3 Score=25.02 Aligned_cols=24 Identities=33% Similarity=0.336 Sum_probs=18.8
Q ss_pred EEEEEEecCCC----CCCCCCCEEEEEc
Q 029425 66 SGTILSVGKNV----SRWKVGDQVCALL 89 (193)
Q Consensus 66 ~G~V~~vG~~~----~~~~~G~~V~~~~ 89 (193)
.|.|+++|+.. ...++||+|+.-.
T Consensus 37 ~G~VvavG~g~~~~~~~Vk~GD~Vl~~~ 64 (91)
T PRK14533 37 KAEVVAVGKLDDEEDFDIKVGDKVIFSK 64 (91)
T ss_pred eEEEEEECCCCccccccccCCCEEEEcc
Confidence 69999999754 2589999997543
No 494
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=77.33 E-value=9.8 Score=30.89 Aligned_cols=49 Identities=12% Similarity=0.058 Sum_probs=34.7
Q ss_pred CCeEEEEcCCchHHHHHHHHHHHCCCE-EEEEeCCc--------chHHHHhhcCCcEEe
Q 029425 140 GESFLVHGGSSGIGTFAIQMGKCQGVR-VFVTAGLA--------TRFILCQPFNIRVFI 189 (193)
Q Consensus 140 ~~~vli~ga~g~~G~~~i~~~~~~g~~-v~~~~~~~--------~~~~~~~~~G~~~~~ 189 (193)
+++++|.|+ |.+|.-++..+...|++ |+++.+.+ ...+.+++.|.....
T Consensus 172 g~~vvViG~-G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~~~~~~~~~~~l~~~gi~i~~ 229 (352)
T PRK12770 172 GKKVVVVGA-GLTAVDAALEAVLLGAEKVYLAYRRTINEAPAGKYEIERLIARGVEFLE 229 (352)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEeecchhhCCCCHHHHHHHHHcCCEEee
Confidence 689999997 99998888777778886 88887532 223445666765433
No 495
>PRK13028 tryptophan synthase subunit beta; Provisional
Probab=77.21 E-value=13 Score=31.05 Aligned_cols=48 Identities=10% Similarity=0.126 Sum_probs=34.4
Q ss_pred eEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc--c----hHHHHhhcCCcEEe
Q 029425 142 SFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA--T----RFILCQPFNIRVFI 189 (193)
Q Consensus 142 ~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~--~----~~~~~~~~G~~~~~ 189 (193)
.+++..++|+.|.++...++.+|.+.+++.... + +....+.+|+..+.
T Consensus 112 ~vI~etgsGnhG~A~A~aaa~~Gl~~~I~m~~~d~~~q~~nv~~mr~~GAeVi~ 165 (402)
T PRK13028 112 RLIAETGAGQHGVATATAAALFGLECEIYMGEVDIERQHPNVFRMKLLGAEVVP 165 (402)
T ss_pred eEEEecCcHHHHHHHHHHHHHcCCCEEEEECCCcchhhHHHHHHHHHcCCEEEE
Confidence 455534459999999999999999877766432 2 23467889996554
No 496
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=77.17 E-value=7.2 Score=29.80 Aligned_cols=34 Identities=15% Similarity=0.118 Sum_probs=29.1
Q ss_pred CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC
Q 029425 139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGL 173 (193)
Q Consensus 139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~ 173 (193)
++.+|||.|+ |.++.-=+..+...|++|.++...
T Consensus 24 ~~~~VLVVGG-G~VA~RK~~~Ll~~gA~VtVVap~ 57 (223)
T PRK05562 24 NKIKVLIIGG-GKAAFIKGKTFLKKGCYVYILSKK 57 (223)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCC
Confidence 5679999998 999988888888899999988754
No 497
>PRK14967 putative methyltransferase; Provisional
Probab=77.14 E-value=14 Score=27.91 Aligned_cols=46 Identities=17% Similarity=0.179 Sum_probs=35.4
Q ss_pred hcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHhh
Q 029425 134 TSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQP 182 (193)
Q Consensus 134 ~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~~ 182 (193)
...+++++++|-.|+ |. |..++.+++. ++ +++.++.+++..+.+++
T Consensus 31 ~~~~~~~~~vLDlGc-G~-G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~ 77 (223)
T PRK14967 31 AEGLGPGRRVLDLCT-GS-GALAVAAAAA-GAGSVTAVDISRRAVRSARL 77 (223)
T ss_pred hcccCCCCeEEEecC-CH-HHHHHHHHHc-CCCeEEEEECCHHHHHHHHH
Confidence 345678899999986 55 8888888875 55 89999999887765543
No 498
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=76.99 E-value=5.2 Score=31.15 Aligned_cols=32 Identities=19% Similarity=0.169 Sum_probs=27.9
Q ss_pred eEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc
Q 029425 142 SFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA 174 (193)
Q Consensus 142 ~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~ 174 (193)
.++|.|+ |..|+++...+...|.+|.++.++.
T Consensus 23 DVvIVGg-GpAGL~aA~~la~~G~~V~vlEk~~ 54 (254)
T TIGR00292 23 DVIIVGA-GPSGLTAAYYLAKNGLKVCVLERSL 54 (254)
T ss_pred CEEEECC-CHHHHHHHHHHHHCCCcEEEEecCC
Confidence 4888898 9999999988888999999998764
No 499
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=76.92 E-value=29 Score=27.58 Aligned_cols=54 Identities=11% Similarity=0.068 Sum_probs=38.3
Q ss_pred CcchHHHHHHHHHHhcCCC-CCCeEEEEcCCchHHHHHHHHHHH--CCCEEEEEeCCc
Q 029425 120 FPEVACTVWSTVFMTSHLS-PGESFLVHGGSSGIGTFAIQMGKC--QGVRVFVTAGLA 174 (193)
Q Consensus 120 ~~~~~~~a~~~l~~~~~~~-~~~~vli~ga~g~~G~~~i~~~~~--~g~~v~~~~~~~ 174 (193)
+|+.....+..| +..+++ .|++++|.|.+..+|.-+..++.. .++.|.+.-+..
T Consensus 138 ~PcTp~av~~ll-~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~T 194 (284)
T PRK14193 138 LPCTPRGIVHLL-RRYDVELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTGT 194 (284)
T ss_pred CCCCHHHHHHHH-HHhCCCCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCCC
Confidence 455545555444 333333 589999999999999999999987 688887766433
No 500
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=76.92 E-value=10 Score=28.06 Aligned_cols=51 Identities=20% Similarity=0.298 Sum_probs=39.3
Q ss_pred cCCCCCCeEEEEcCCchHHHHHHHHHHHC-CCEEEEEeCCcchHHHHh----hcCCcE
Q 029425 135 SHLSPGESFLVHGGSSGIGTFAIQMGKCQ-GVRVFVTAGLATRFILCQ----PFNIRV 187 (193)
Q Consensus 135 ~~~~~~~~vli~ga~g~~G~~~i~~~~~~-g~~v~~~~~~~~~~~~~~----~~G~~~ 187 (193)
..+++++.++=.|+ +.|...+++++.. ..+||++.++++..+..+ +||++.
T Consensus 30 L~~~~g~~l~DIGa--GtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n 85 (187)
T COG2242 30 LRPRPGDRLWDIGA--GTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDN 85 (187)
T ss_pred hCCCCCCEEEEeCC--CccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCc
Confidence 46789998877775 4578888999654 469999999999888775 477763
Done!