BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029427
(193 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2P1N|C Chain C, Mechanism Of Auxin Perception By The Tir1 Ubiqutin
Ligase
pdb|2P1N|F Chain F, Mechanism Of Auxin Perception By The Tir1 Ubiqutin
Ligase
pdb|2P1O|C Chain C, Mechanism Of Auxin Perception By The Tir1 Ubiquitin
Ligase
pdb|2P1Q|C Chain C, Mechanism Of Auxin Perception By The Tir1 Ubiquitin
Ligase
Length = 13
Score = 31.2 bits (69), Expect = 0.36, Method: Composition-based stats.
Identities = 11/13 (84%), Positives = 13/13 (100%)
Query: 70 QVVGWPPIRSYRK 82
QVVGWPP+R+YRK
Sbjct: 1 QVVGWPPVRNYRK 13
>pdb|4FWX|A Chain A, Aquoferric F33y Cub Myoglobin (F33y L29h F43h Sperm Whale
Myoglobin)
pdb|4FWY|A Chain A, F33y Cub Myoglobin (F33y L29h F43h Sperm Whale Myoglobin)
With Copper Bound
Length = 153
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 97 IYVKVSMDGAPYLRKIHLNIYKDYPELLKALEDMFK 132
++ KV D A + + IH+ +YK +PE L+ D FK
Sbjct: 13 VWAKVEADVAGHGQDIHIRLYKSHPETLEK-HDRFK 47
>pdb|1OLU|A Chain A, Roles Of His291-Alpha And His146-Beta' In The Reductive
Acylation Reaction Catalyzed By Human Branched-Chain
Alpha-Ketoacid Dehydrogenase
pdb|1V1R|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
Length = 400
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 9 LEATELRLGLPGTQESRSNKRSLPDMNIVDDQDH 42
+EA R+G T + S RS+ ++N D QDH
Sbjct: 281 IEAMTYRIGHASTSDDSSAYRSVDEVNYWDKQDH 314
>pdb|3M38|A Chain A, The Roles Of Glutamates And Metal Ions In A Rationally
Designed Nitric Oxide Reductase Based On Myoglobin:
I107e Febmb (No Metal Ion Binding To Feb Site)
pdb|3M39|A Chain A, The Roles Of Glutamates And Metal Ions In A Rationally
Desig Oxide Reductase Based On Myoglobin: Fe(Ii)-I107e
Febmb (Fe( Binding To Feb Site)
pdb|3M3A|A Chain A, The Roles Of Glutamates And Metal Ions In A Rationally
Desig Oxide Reductase Based On Myoglobin: Cu(Ii)-I107e
Febmb (Cu( Binding To Feb Site)
pdb|3M3B|A Chain A, The Roles Of Glutamates And Metal Ions In A Rationally
Desig Oxide Reductase Based On Myoglobin: Zn(Ii)-I107e
Febmb (Zn( Binding To Feb Site)
Length = 153
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 97 IYVKVSMDGAPYLRKIHLNIYKDYPELLKALEDMFK 132
++ KV D A + + IH+ ++K +PE L+ D FK
Sbjct: 13 VWAKVEADVAGHGQDIHIRLFKSHPETLEK-HDRFK 47
>pdb|1X7Y|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 9 LEATELRLGLPGTQESRSNKRSLPDMNIVDDQDH 42
+EA R+G T + S RS+ ++N D QDH
Sbjct: 281 IEAMTYRIGHHNTSDDSSAYRSVDEVNYWDKQDH 314
>pdb|1DTW|A Chain A, Human Branched-Chain Alpha-Keto Acid Dehydrogenase
pdb|1OLS|A Chain A, Roles Of His291-Alpha And His146-Beta' In The Reductive
Acylation Reaction Catalyzed By Human Branched-Chain
Alpha-Ketoacid Dehydrogenase
pdb|1OLX|A Chain A, Roles Of His291-alpha And His146-beta' In The Reductive
Acylation Reaction Catalyzed By Human Branched-chain
Alpha-ketoacid Dehydrogenase
pdb|1U5B|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
pdb|1WCI|A Chain A, Reactivity Modulation Of Human Branched-chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BEU|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BEV|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BEW|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 9 LEATELRLGLPGTQESRSNKRSLPDMNIVDDQDH 42
+EA R+G T + S RS+ ++N D QDH
Sbjct: 281 IEAMTYRIGHHSTSDDSSAYRSVDEVNYWDKQDH 314
>pdb|3K9Z|A Chain A, Rational Design Of A Structural And Functional Nitric
Oxide Reductase
Length = 153
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 97 IYVKVSMDGAPYLRKIHLNIYKDYPELLKALEDMFK 132
++ KV D A + + IH+ ++K +PE L+ D FK
Sbjct: 13 VWAKVEADVAGHGQDIHIRLFKSHPETLEK-HDRFK 47
>pdb|2BFB|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 9 LEATELRLGLPGTQESRSNKRSLPDMNIVDDQDH 42
+EA R+G T + S RS+ ++N D QDH
Sbjct: 281 IEAMTYRIGHASTSDDSSAFRSVDEVNYWDKQDH 314
>pdb|4FWZ|A Chain A, Aquoferric Cub Myoglobin (L29h F43h Sperm Whale Myoglobin)
Length = 153
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 97 IYVKVSMDGAPYLRKIHLNIYKDYPELLKALEDMFK 132
++ KV D A + + IH+ ++K +PE L+ D FK
Sbjct: 13 VWAKVEADVAGHGQDIHIRLFKSHPETLEK-HDRFK 47
>pdb|1V16|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
Length = 400
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 9 LEATELRLGLPGTQESRSNKRSLPDMNIVDDQDH 42
+EA R+G T + S RS+ ++N D QDH
Sbjct: 281 IEAMTYRIGHASTSDDSSAFRSVDEVNYWDKQDH 314
>pdb|2BFC|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 9 LEATELRLGLPGTQESRSNKRSLPDMNIVDDQDH 42
+EA R+G T + S RS+ ++N D QDH
Sbjct: 281 IEAMTYRIGHASTSDDSSAFRSVDEVNYWDKQDH 314
>pdb|1OFJ|A Chain A, Recombinant Sperm Whale Myoglobin L29hH64LD122N MUTANT
(With Initiator Met)
Length = 154
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 97 IYVKVSMDGAPYLRKIHLNIYKDYPELLKALEDMFK 132
++ KV D A + + IH+ ++K +PE L+ D FK
Sbjct: 14 VWAKVEADVAGHGQDIHIRLFKSHPETLEKF-DRFK 48
>pdb|2BFD|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 27.3 bits (59), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 9 LEATELRLGLPGTQESRSNKRSLPDMNIVDDQDH 42
+EA R+G T + S RS+ ++N D QDH
Sbjct: 281 IEAMTYRIGHASTSDDSSAFRSVDEVNYWDKQDH 314
>pdb|1X80|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 27.3 bits (59), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 9 LEATELRLGLPGTQESRSNKRSLPDMNIVDDQDH 42
+EA R+G T + S RS+ ++N D QDH
Sbjct: 281 IEAMTYRIGHHXTSDDSSAYRSVDEVNYWDKQDH 314
>pdb|1X7Z|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 26.9 bits (58), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 9 LEATELRLGLPGTQESRSNKRSLPDMNIVDDQDH 42
+EA R+G T + S RS+ ++N D QDH
Sbjct: 281 IEAMTYRIGHHDTSDDSSAYRSVDEVNYWDKQDH 314
>pdb|2BFE|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 26.9 bits (58), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 9 LEATELRLGLPGTQESRSNKRSLPDMNIVDDQDH 42
+EA R+G T + S RS+ ++N D QDH
Sbjct: 281 IEAMTYRIGHHSTSDDSSAFRSVDEVNYWDKQDH 314
>pdb|1X7W|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 26.9 bits (58), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 9 LEATELRLGLPGTQESRSNKRSLPDMNIVDDQDH 42
+EA R+G T + S RS+ ++N D QDH
Sbjct: 281 IEAMTYRIGHHQTSDDSSAYRSVDEVNYWDKQDH 314
>pdb|1X7X|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 26.9 bits (58), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 9 LEATELRLGLPGTQESRSNKRSLPDMNIVDDQDH 42
+EA R+G T + S RS+ ++N D QDH
Sbjct: 281 IEAMTYRIGHHETSDDSSAYRSVDEVNYWDKQDH 314
>pdb|1V1M|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
Length = 400
Score = 26.6 bits (57), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 9 LEATELRLGLPGTQESRSNKRSLPDMNIVDDQDH 42
+EA R+G T S RS+ ++N D QDH
Sbjct: 281 IEAMTYRIGHASTSADSSAFRSVDEVNYWDKQDH 314
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,096,783
Number of Sequences: 62578
Number of extensions: 172201
Number of successful extensions: 347
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 328
Number of HSP's gapped (non-prelim): 19
length of query: 193
length of database: 14,973,337
effective HSP length: 93
effective length of query: 100
effective length of database: 9,153,583
effective search space: 915358300
effective search space used: 915358300
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 49 (23.5 bits)