Query 029427
Match_columns 193
No_of_seqs 220 out of 580
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 12:44:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029427.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029427hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02309 AUX_IAA: AUX/IAA fami 100.0 4.2E-65 9E-70 429.7 0.4 184 7-192 1-214 (215)
2 PF00564 PB1: PB1 domain; Int 97.7 9.6E-05 2.1E-09 52.7 5.7 68 98-177 3-71 (84)
3 cd06398 PB1_Joka2 The PB1 doma 97.5 0.00047 1E-08 52.2 6.7 68 98-177 2-72 (91)
4 cd06407 PB1_NLP A PB1 domain i 97.4 0.00061 1.3E-08 50.6 6.8 54 99-164 3-56 (82)
5 smart00666 PB1 PB1 domain. Pho 97.4 0.001 2.3E-08 47.3 7.4 65 99-176 4-69 (81)
6 cd05992 PB1 The PB1 domain is 97.2 0.0019 4E-08 45.7 7.3 66 98-176 2-69 (81)
7 cd06396 PB1_NBR1 The PB1 domai 97.1 0.0017 3.8E-08 48.6 6.3 53 99-164 3-55 (81)
8 cd06401 PB1_TFG The PB1 domain 96.9 0.0049 1.1E-07 46.3 7.0 72 99-180 3-78 (81)
9 cd06409 PB1_MUG70 The MUG70 pr 96.4 0.0082 1.8E-07 45.4 5.3 51 106-164 7-59 (86)
10 cd06404 PB1_aPKC PB1 domain is 96.4 0.01 2.3E-07 44.8 5.7 55 99-165 3-57 (83)
11 cd06403 PB1_Par6 The PB1 domai 96.2 0.014 3E-07 43.8 5.5 67 99-176 3-70 (80)
12 cd06397 PB1_UP1 Uncharacterize 95.6 0.042 9.1E-07 41.4 5.9 64 99-175 3-67 (82)
13 cd06402 PB1_p62 The PB1 domain 95.5 0.066 1.4E-06 40.6 6.8 58 98-165 2-64 (87)
14 cd06408 PB1_NoxR The PB1 domai 93.8 0.22 4.7E-06 37.8 6.0 64 98-176 4-68 (86)
15 cd06399 PB1_P40 The PB1 domain 77.8 3.8 8.3E-05 31.6 4.0 39 112-163 22-60 (92)
16 cd06406 PB1_P67 A PB1 domain i 64.8 33 0.00071 25.7 6.3 69 98-180 4-75 (80)
17 cd06395 PB1_Map2k5 PB1 domain 56.0 22 0.00047 27.3 4.1 48 104-164 9-57 (91)
18 PF10411 DsbC_N: Disulfide bon 52.3 11 0.00024 25.8 1.8 17 150-166 34-50 (57)
19 PF12426 DUF3674: RNA dependen 49.8 10 0.00022 25.3 1.3 29 123-156 6-36 (41)
20 PF06463 Mob_synth_C: Molybden 44.5 51 0.0011 25.9 4.8 67 112-183 17-83 (128)
21 PRK11430 putative CoA-transfer 42.6 24 0.00052 32.6 3.0 66 109-177 197-268 (381)
22 COG0219 CspR Predicted rRNA me 42.4 13 0.00029 31.1 1.2 76 104-189 48-132 (155)
23 PRK13361 molybdenum cofactor b 34.4 1.3E+02 0.0027 26.9 6.2 76 102-183 188-266 (329)
24 KOG3938 RGS-GAIP interacting p 31.8 72 0.0016 29.5 4.2 76 103-191 61-143 (334)
25 PF07929 PRiA4_ORF3: Plasmid p 28.6 76 0.0016 25.8 3.5 37 98-134 6-44 (179)
26 PF00788 RA: Ras association ( 26.0 2.2E+02 0.0047 19.7 5.2 69 97-174 3-77 (93)
27 PF02013 CBM_10: Cellulose or 23.3 22 0.00047 22.9 -0.4 12 150-161 16-27 (36)
28 KOG3606 Cell polarity protein 23.1 1.2E+02 0.0026 28.3 4.0 78 97-187 19-102 (358)
29 PF09676 TraV: Type IV conjuga 21.6 59 0.0013 24.7 1.6 20 147-166 91-110 (119)
30 PF11576 DUF3236: Protein of u 21.4 39 0.00084 28.3 0.5 15 9-23 95-109 (154)
31 cd01789 Alp11_N Ubiquitin-like 20.4 3.4E+02 0.0073 19.5 5.8 28 106-135 13-40 (84)
No 1
>PF02309 AUX_IAA: AUX/IAA family; InterPro: IPR003311 The Aux/IAA family of genes are key regulators of auxin-modified gene expression []. The plant hormone auxin (indole-3-acetic acid, IAA) regulates diverse cellular and developmental responses in plants, including cell division, expansion, differentiation and patterning of embryo responses []. Auxin can regulate the gene expression of several families, including GH3 and SAUR, as well as Aux/IAA itself. The Aux/IAA proteins act as repressors of auxin-induced gene expression, possibly through modulating the activity of DNA-binding auxin response factors (ARFs) (IPR010525 from INTERPRO). Aux/IAA and ARF are thought to interact through C-terminal protein-protein interaction domains found in both Aux/IAA and ARF. Recent evidence suggests that Aux/IAA proteins can also mediate light responses []. Some members of the AUX/IAA family are longer and contain an N-terminal DNA binding domain [] and may have an early function in the establishment of vascular and body patterns in embryonic and post-embryonic development in some plants.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2P1N_F 2P1Q_C 2P1O_C.
Probab=100.00 E-value=4.2e-65 Score=429.69 Aligned_cols=184 Identities=52% Similarity=0.853 Sum_probs=6.0
Q ss_pred CCccccccccCCCCCCc------------ccCCcCCCCCCCCCCccc-----cCCCcchhhcc-c---ccCCCCCCCCCC
Q 029427 7 LNLEATELRLGLPGTQE------------SRSNKRSLPDMNIVDDQD-----HRSGSSRVIAN-A---SNATKSEEETTP 65 (193)
Q Consensus 7 l~l~~TELrLGLPG~~~------------~~~~KR~~~e~~~~~~~~-----~~~~~~~~~~~-~---~~~~~~~~~~~p 65 (193)
|||++|||||||||+.+ ..++||+|+++++..... ........... . ..........+|
T Consensus 1 ln~~~TELrLGLPG~~~~~~~~~~~~~~~~~~~kR~F~~aid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 80 (215)
T PF02309_consen 1 LNLKATELRLGLPGSESPDASSSSSSKKSSSGNKRGFSEAIDSSSSNSQSSSSSSSDSSSSSSSSSTSSSSSDSSSSSPP 80 (215)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCchhhhhcccCCCCCCCCcccccccccccCcccccchhhhhhcccccccccccccccCcccccccccccccccccCCCC
Confidence 79999999999999852 256899999987543210 00000000000 0 000112233345
Q ss_pred CCCCCcccCCCCcchhhhhhhhhccccccCCceeEEEEcCccccceeecCCCCChHHHHHHHHhHhc-ccccccc-----
Q 029427 66 PSKTQVVGWPPIRSYRKNSLQAKKSEAEASGIYVKVSMDGAPYLRKIHLNIYKDYPELLKALEDMFK-FKVGEYS----- 139 (193)
Q Consensus 66 ~~k~qvVGWPPVrs~Rkn~~~~~~~~~~~~~~~VKV~MdG~pigRKVDL~~~~sY~eL~~~L~~MF~-~~~g~~~----- 139 (193)
.+++|+||||||++||+|.+...+.. ..++||||+|||+||||||||++|+||++|+.+|++||+ +.|+++.
T Consensus 81 ~~~~~~vgwpp~~s~r~n~~~~~~~~--~~~~~vKV~mdG~~igRkVDL~~~~sY~~L~~~L~~MF~~~~i~~~~~~~~~ 158 (215)
T PF02309_consen 81 ASKAQVVGWPPVRSFRKNSLSEKQSS--SSRSYVKVNMDGVPIGRKVDLSAYSSYEELSSALEKMFSCFSIEQCGSHGLN 158 (215)
T ss_dssp -----BTTBS----S-----------------------------------------------------------------
T ss_pred cccccccCCCcccccccccccccccc--cCCceeEEEecCcccceecCHHHhhCHHHHHHHHHHhcCCCCcccccccccc
Confidence 57899999999999999987622211 237999999999999999999999999999999999995 4443110
Q ss_pred ---ccCCCCCCcceeEEEcCCCCeEEccCCChHHHhhccceeEEecCCcccccccC
Q 029427 140 ---ESEGYNGSEFVPTYEDKDGDWMLVGDVPWEMFITSCKRLRVMKGSEARGLGCA 192 (193)
Q Consensus 140 ---~~~~~~~s~~~ltYeDkdGDwMLVGDvPW~mFv~svkRLrImk~sea~gl~~~ 192 (193)
..+..++++|+|||||+||||||||||||+|||++|||||||+.+|++||+|.
T Consensus 159 ~~~~~~~~~~~~~~l~Y~D~egd~mlvGD~PW~~F~~~vkRl~I~~~~e~~~~~~r 214 (215)
T PF02309_consen 159 ESGLLDLLNGSEYVLVYEDKEGDWMLVGDVPWEEFVKSVKRLRIMKSSEAKGLAPR 214 (215)
T ss_dssp --------------------------------------------------------
T ss_pred chhhccccCCcceeEEEECCCCCEEEecCCCHHHHHHHhhccEEecHHHhcccCCC
Confidence 01123578999999999999999999999999999999999999999999985
No 2
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=97.71 E-value=9.6e-05 Score=52.67 Aligned_cols=68 Identities=25% Similarity=0.379 Sum_probs=55.1
Q ss_pred eeEEEEcCccccceeecCCCCChHHHHHHHHhHhccccccccccCCCCCCcceeEEEcCCCCeEEccC-CChHHHhhccc
Q 029427 98 YVKVSMDGAPYLRKIHLNIYKDYPELLKALEDMFKFKVGEYSESEGYNGSEFVPTYEDKDGDWMLVGD-VPWEMFITSCK 176 (193)
Q Consensus 98 ~VKV~MdG~pigRKVDL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVGD-vPW~mFv~svk 176 (193)
-||+...|. +=|.+.+..--+|++|...++..|++. ...+.+.|.|.||||..+-+ .=|++.++.++
T Consensus 3 ~vK~~~~~~-~~~~~~~~~~~s~~~L~~~i~~~~~~~-----------~~~~~l~Y~D~dgD~V~i~sd~Dl~~a~~~~~ 70 (84)
T PF00564_consen 3 RVKVRYGGD-IRRIISLPSDVSFDDLRSKIREKFGLL-----------DEDFQLKYKDEDGDLVTISSDEDLQEAIEQAK 70 (84)
T ss_dssp EEEEEETTE-EEEEEEECSTSHHHHHHHHHHHHHTTS-----------TSSEEEEEEETTSSEEEESSHHHHHHHHHHHH
T ss_pred EEEEEECCe-eEEEEEcCCCCCHHHHHHHHHHHhCCC-----------CccEEEEeeCCCCCEEEeCCHHHHHHHHHHHH
Confidence 379999997 434688888889999999999999975 13679999999999998874 45888777775
Q ss_pred e
Q 029427 177 R 177 (193)
Q Consensus 177 R 177 (193)
+
T Consensus 71 ~ 71 (84)
T PF00564_consen 71 E 71 (84)
T ss_dssp H
T ss_pred h
Confidence 3
No 3
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=97.46 E-value=0.00047 Score=52.19 Aligned_cols=68 Identities=21% Similarity=0.296 Sum_probs=52.8
Q ss_pred eeEEEEcCccccceeecC---CCCChHHHHHHHHhHhccccccccccCCCCCCcceeEEEcCCCCeEEccCCChHHHhhc
Q 029427 98 YVKVSMDGAPYLRKIHLN---IYKDYPELLKALEDMFKFKVGEYSESEGYNGSEFVPTYEDKDGDWMLVGDVPWEMFITS 174 (193)
Q Consensus 98 ~VKV~MdG~pigRKVDL~---~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVGDvPW~mFv~s 174 (193)
-|||.-+|.-+=-++++. .--+|++|...+.+.|.+. ...+|++.|.|.||||..+-.. +.|..+
T Consensus 2 ~vKv~y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~----------~~~~~~l~Y~Dedgd~V~l~~D--~DL~~a 69 (91)
T cd06398 2 VVKVKYGGTLRRFTFPVAENQLDLNMDGLREKVEELFSLS----------PDADLSLTYTDEDGDVVTLVDD--NDLTDA 69 (91)
T ss_pred EEEEEeCCEEEEEEeccccccCCCCHHHHHHHHHHHhCCC----------CCCcEEEEEECCCCCEEEEccH--HHHHHH
Confidence 489999998555555554 4679999999999999874 2357899999999999998665 556555
Q ss_pred cce
Q 029427 175 CKR 177 (193)
Q Consensus 175 vkR 177 (193)
+.+
T Consensus 70 ~~~ 72 (91)
T cd06398 70 IQY 72 (91)
T ss_pred HHH
Confidence 554
No 4
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=97.42 E-value=0.00061 Score=50.57 Aligned_cols=54 Identities=26% Similarity=0.426 Sum_probs=43.9
Q ss_pred eEEEEcCccccceeecCCCCChHHHHHHHHhHhccccccccccCCCCCCcceeEEEcCCCCeEEcc
Q 029427 99 VKVSMDGAPYLRKIHLNIYKDYPELLKALEDMFKFKVGEYSESEGYNGSEFVPTYEDKDGDWMLVG 164 (193)
Q Consensus 99 VKV~MdG~pigRKVDL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVG 164 (193)
|||...|. .+.+-|..--+|++|.+.+.++|++. +.+.|.|.|.|.||||.++-
T Consensus 3 vK~~~~~d--~~r~~l~~~~~~~~L~~~i~~r~~~~----------~~~~f~LkY~Ddegd~v~lt 56 (82)
T cd06407 3 VKATYGEE--KIRFRLPPSWGFTELKQEIAKRFKLD----------DMSAFDLKYLDDDEEWVLLT 56 (82)
T ss_pred EEEEeCCe--EEEEEcCCCCCHHHHHHHHHHHhCCC----------CCCeeEEEEECCCCCeEEee
Confidence 79999887 44455555669999999999999974 12478999999999999864
No 5
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=97.38 E-value=0.001 Score=47.30 Aligned_cols=65 Identities=22% Similarity=0.359 Sum_probs=51.7
Q ss_pred eEEEEcCccccceeecCCCCChHHHHHHHHhHhccccccccccCCCCCCcceeEEEcCCCCeEEccC-CChHHHhhccc
Q 029427 99 VKVSMDGAPYLRKIHLNIYKDYPELLKALEDMFKFKVGEYSESEGYNGSEFVPTYEDKDGDWMLVGD-VPWEMFITSCK 176 (193)
Q Consensus 99 VKV~MdG~pigRKVDL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVGD-vPW~mFv~svk 176 (193)
|||.-.|. -|.+-+..--+|++|...+.+.|++.. ..+.+.|+|.||||..+.+ .=|.+.++.++
T Consensus 4 vK~~~~~~--~~~~~~~~~~s~~dL~~~i~~~~~~~~-----------~~~~l~Y~Dedgd~v~l~sd~Dl~~a~~~~~ 69 (81)
T smart00666 4 VKLRYGGE--TRRLSVPRDISFEDLRSKVAKRFGLDN-----------QSFTLKYQDEDGDLVSLTSDEDLEEAIEEYD 69 (81)
T ss_pred EEEEECCE--EEEEEECCCCCHHHHHHHHHHHhCCCC-----------CCeEEEEECCCCCEEEecCHHHHHHHHHHHH
Confidence 67877543 677778888999999999999999741 3579999999999987665 56777777665
No 6
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=97.24 E-value=0.0019 Score=45.69 Aligned_cols=66 Identities=23% Similarity=0.393 Sum_probs=51.8
Q ss_pred eeEEEEcCccccceeecC-CCCChHHHHHHHHhHhccccccccccCCCCCCcceeEEEcCCCCeEEccC-CChHHHhhcc
Q 029427 98 YVKVSMDGAPYLRKIHLN-IYKDYPELLKALEDMFKFKVGEYSESEGYNGSEFVPTYEDKDGDWMLVGD-VPWEMFITSC 175 (193)
Q Consensus 98 ~VKV~MdG~pigRKVDL~-~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVGD-vPW~mFv~sv 175 (193)
-|||.-.|. -|.+=+. .--+|++|...|.+.|++.. ..+.+.|.|.||||..+.+ .=|++.++.+
T Consensus 2 ~vK~~~~~~--~~~~~~~~~~~s~~~L~~~i~~~~~~~~-----------~~~~l~y~D~e~d~v~l~sd~Dl~~a~~~~ 68 (81)
T cd05992 2 RVKVKYGGE--IRRFVVVSRSISFEDLRSKIAEKFGLDA-----------VSFKLKYPDEDGDLVTISSDEDLEEAIEEA 68 (81)
T ss_pred cEEEEecCC--CEEEEEecCCCCHHHHHHHHHHHhCCCC-----------CcEEEEeeCCCCCEEEeCCHHHHHHHHHHH
Confidence 368888765 3444444 88899999999999999752 2579999999999999887 5677777766
Q ss_pred c
Q 029427 176 K 176 (193)
Q Consensus 176 k 176 (193)
+
T Consensus 69 ~ 69 (81)
T cd05992 69 R 69 (81)
T ss_pred h
Confidence 5
No 7
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=97.11 E-value=0.0017 Score=48.59 Aligned_cols=53 Identities=13% Similarity=0.202 Sum_probs=46.5
Q ss_pred eEEEEcCccccceeecCCCCChHHHHHHHHhHhccccccccccCCCCCCcceeEEEcCCCCeEEcc
Q 029427 99 VKVSMDGAPYLRKIHLNIYKDYPELLKALEDMFKFKVGEYSESEGYNGSEFVPTYEDKDGDWMLVG 164 (193)
Q Consensus 99 VKV~MdG~pigRKVDL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVG 164 (193)
|||.-.|.-+--+++-+..-+|++|...+.++|++. .+.+.|-|.||||.++-
T Consensus 3 vKaty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~-------------~f~lKYlDde~e~v~ls 55 (81)
T cd06396 3 LKVTYNGESQSFLVSDSENTTWASVEAMVKVSFGLN-------------DIQIKYVDEENEEVSVN 55 (81)
T ss_pred EEEEECCeEEEEEecCCCCCCHHHHHHHHHHHhCCC-------------cceeEEEcCCCCEEEEE
Confidence 799999997777888877889999999999999986 25799999999998874
No 8
>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domains of TFG represent a type I/II PB1 domain. The physiological function of TFG remains unknown.
Probab=96.88 E-value=0.0049 Score=46.29 Aligned_cols=72 Identities=24% Similarity=0.454 Sum_probs=49.0
Q ss_pred eEEEEcCccccceeecCCC-CChHHHHHHHHhHhccccccccccCCCCCCcceeEEEcCCCCeEEccCC---ChHHHhhc
Q 029427 99 VKVSMDGAPYLRKIHLNIY-KDYPELLKALEDMFKFKVGEYSESEGYNGSEFVPTYEDKDGDWMLVGDV---PWEMFITS 174 (193)
Q Consensus 99 VKV~MdG~pigRKVDL~~~-~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVGDv---PW~mFv~s 174 (193)
+|+..+|. | |++=+..- -+|.+|...+++.|....+ ....+.+.|.|.|||+.-+.+- -|..-+..
T Consensus 3 iK~~~g~D-i-R~~~~~~~~~t~~~L~~~v~~~F~~~~~--------~~~~flIKYkD~dGDlVTIts~~dL~~A~~~~~ 72 (81)
T cd06401 3 LKAQLGDD-I-RRIPIHNEDITYDELLLMMQRVFRGKLG--------SSDDVLIKYKDEDGDLITIFDSSDLSFAIQCSR 72 (81)
T ss_pred EEEEeCCe-E-EEEeccCccccHHHHHHHHHHHhccccC--------CcccEEEEEECCCCCEEEeccHHHHHHHHhcCc
Confidence 57666555 4 44433332 3999999999999995432 2357899999999999999875 33333334
Q ss_pred cceeEE
Q 029427 175 CKRLRV 180 (193)
Q Consensus 175 vkRLrI 180 (193)
.+||+|
T Consensus 73 ~~~l~~ 78 (81)
T cd06401 73 ILKLTL 78 (81)
T ss_pred ceEEEE
Confidence 445555
No 9
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=96.38 E-value=0.0082 Score=45.35 Aligned_cols=51 Identities=18% Similarity=0.189 Sum_probs=39.9
Q ss_pred ccccceeecC--CCCChHHHHHHHHhHhccccccccccCCCCCCcceeEEEcCCCCeEEcc
Q 029427 106 APYLRKIHLN--IYKDYPELLKALEDMFKFKVGEYSESEGYNGSEFVPTYEDKDGDWMLVG 164 (193)
Q Consensus 106 ~pigRKVDL~--~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVG 164 (193)
+|-||.+=++ ...|+.+|..++.+-|+...- ....|.|.|.|.||||.++-
T Consensus 7 ~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~--------~~~~~~L~YlDDEgD~VllT 59 (86)
T cd06409 7 DPKGRVHRFRLRPSESLEELRTLISQRLGDDDF--------ETHLYALSYVDDEGDIVLIT 59 (86)
T ss_pred CCCCCEEEEEecCCCCHHHHHHHHHHHhCCccc--------cCCcccEEEEcCCCCEEEEe
Confidence 5677765554 378999999999999997521 13478999999999999874
No 10
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=96.36 E-value=0.01 Score=44.76 Aligned_cols=55 Identities=24% Similarity=0.378 Sum_probs=45.1
Q ss_pred eEEEEcCccccceeecCCCCChHHHHHHHHhHhccccccccccCCCCCCcceeEEEcCCCCeEEccC
Q 029427 99 VKVSMDGAPYLRKIHLNIYKDYPELLKALEDMFKFKVGEYSESEGYNGSEFVPTYEDKDGDWMLVGD 165 (193)
Q Consensus 99 VKV~MdG~pigRKVDL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVGD 165 (193)
+|+.-.|.-.--.+|. .-+|++|.+.+.+||.+.. ...|++.|.|.|||---+..
T Consensus 3 ~K~~y~gdi~it~~d~--~~s~e~L~~~v~~~c~~~~----------~q~ft~kw~DEEGDp~tiSS 57 (83)
T cd06404 3 VKAAYNGDIMITSIDP--SISLEELCNEVRDMCRFHN----------DQPFTLKWIDEEGDPCTISS 57 (83)
T ss_pred EEEEecCcEEEEEcCC--CcCHHHHHHHHHHHhCCCC----------CCcEEEEEECCCCCceeecC
Confidence 7899999866556666 6789999999999999852 34689999999999877654
No 11
>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The
Probab=96.17 E-value=0.014 Score=43.83 Aligned_cols=67 Identities=21% Similarity=0.317 Sum_probs=49.4
Q ss_pred eEEEEcCccccceeecCCCCChHHHHHHHHhHhccccccccccCCCCCCcceeEEEcCCCCeEEcc-CCChHHHhhccc
Q 029427 99 VKVSMDGAPYLRKIHLNIYKDYPELLKALEDMFKFKVGEYSESEGYNGSEFVPTYEDKDGDWMLVG-DVPWEMFITSCK 176 (193)
Q Consensus 99 VKV~MdG~pigRKVDL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVG-DvPW~mFv~svk 176 (193)
||...|..=-=-.+|.....+|++++.-|+.||.+. +-.|++-|.|.+||.+-+- |+-+..-+++++
T Consensus 3 VKSkfdaEfRRFsl~r~~~~~f~ef~~ll~~lH~l~-----------~~~f~i~Y~D~~gDLLPInNDdNf~kAlssa~ 70 (80)
T cd06403 3 VKSKFDAEFRRFSLDRNKPGKFEDFYKLLEHLHHIP-----------NVDFLIGYTDPHGDLLPINNDDNFLKALSSAN 70 (80)
T ss_pred eecccCCeEEEEEeccccCcCHHHHHHHHHHHhCCC-----------CCcEEEEEeCCCCCEecccCcHHHHHHHHcCC
Confidence 566666653222455556699999999999999975 2368999999999999875 445555566776
No 12
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=95.59 E-value=0.042 Score=41.45 Aligned_cols=64 Identities=22% Similarity=0.266 Sum_probs=49.5
Q ss_pred eEEEEcCccccceeecCCCCChHHHHHHHHhHhccccccccccCCCCCCcceeEEEcCCCCeEEccC-CChHHHhhcc
Q 029427 99 VKVSMDGAPYLRKIHLNIYKDYPELLKALEDMFKFKVGEYSESEGYNGSEFVPTYEDKDGDWMLVGD-VPWEMFITSC 175 (193)
Q Consensus 99 VKV~MdG~pigRKVDL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVGD-vPW~mFv~sv 175 (193)
-||+-+|. .|++-...-=+|..|.+.|+.+|.+.. . .+.+||.|.|||..-+-| .=-+.|.+-.
T Consensus 3 fKv~~~g~--~RRf~~~~~pt~~~L~~kl~~Lf~lp~----------~-~~~vtYiDeD~D~ITlssd~eL~d~~~~~ 67 (82)
T cd06397 3 FKSSFLGD--TRRIVFPDIPTWEALASKLENLYNLPE----------I-KVGVTYIDNDNDEITLSSNKELQDFYRLS 67 (82)
T ss_pred EEEEeCCc--eEEEecCCCccHHHHHHHHHHHhCCCh----------h-HeEEEEEcCCCCEEEecchHHHHHHHHhc
Confidence 37888886 788888888999999999999999861 1 268999999999876544 4555555433
No 13
>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover. The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=95.50 E-value=0.066 Score=40.55 Aligned_cols=58 Identities=21% Similarity=0.398 Sum_probs=43.4
Q ss_pred eeEEEEcC---cccccee--ecCCCCChHHHHHHHHhHhccccccccccCCCCCCcceeEEEcCCCCeEEccC
Q 029427 98 YVKVSMDG---APYLRKI--HLNIYKDYPELLKALEDMFKFKVGEYSESEGYNGSEFVPTYEDKDGDWMLVGD 165 (193)
Q Consensus 98 ~VKV~MdG---~pigRKV--DL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVGD 165 (193)
.||.+..| .+==|++ |=....+|++|...+.++|... .+..|++.|.|.|||..-+..
T Consensus 2 ~vkayl~~~~~~~EIRRf~l~~~~~~s~~~L~~~V~~~f~~l----------~~~~ftlky~DeeGDlvtIss 64 (87)
T cd06402 2 TVKAYLLGKDANAEIRRFAIDEDVSTSYEYLVEKVAAVFPSL----------RGKNFQLFWKDEEGDLVAFSS 64 (87)
T ss_pred eEEEeecCCCCccceEEEEecCCCCcCHHHHHHHHHHHcccc----------CCCcEEEEEECCCCCEEeecC
Confidence 57777766 2333444 4466679999999999999753 134789999999999987764
No 14
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=93.85 E-value=0.22 Score=37.76 Aligned_cols=64 Identities=25% Similarity=0.413 Sum_probs=49.8
Q ss_pred eeEEEEcCccccceeecCCCCChHHHHHHHHhHhccccccccccCCCCCCcceeEEEcCCCCeEEccCC-ChHHHhhccc
Q 029427 98 YVKVSMDGAPYLRKIHLNIYKDYPELLKALEDMFKFKVGEYSESEGYNGSEFVPTYEDKDGDWMLVGDV-PWEMFITSCK 176 (193)
Q Consensus 98 ~VKV~MdG~pigRKVDL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVGDv-PW~mFv~svk 176 (193)
=|||+-.|. .|-|-+..-=+|++|...+.++|++. ..+.+-|.|. ||..-+++- =-++-+.++|
T Consensus 4 kVKv~~~~D--v~~i~v~~~i~f~dL~~kIrdkf~~~------------~~~~iKykDE-GD~iti~sq~DLd~Ai~~a~ 68 (86)
T cd06408 4 RVKVHAQDD--TRYIMIGPDTGFADFEDKIRDKFGFK------------RRLKIKMKDD-GDMITMGDQDDLDMAIDTAR 68 (86)
T ss_pred EEEEEecCc--EEEEEcCCCCCHHHHHHHHHHHhCCC------------CceEEEEEcC-CCCccccCHHHHHHHHHHHH
Confidence 489998888 56677777778999999999999984 1578999999 999888874 3444455544
No 15
>cd06399 PB1_P40 The PB1 domain is essential part of the p40 adaptor protein which plays an important role in activating phagocyte NADPH oxidase during phagocytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes , such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domain of p40 represents a type I PB1 domain which interacts with the PB1 domain of oxidase activator p67 w
Probab=77.79 E-value=3.8 Score=31.56 Aligned_cols=39 Identities=21% Similarity=0.323 Sum_probs=31.3
Q ss_pred eecCCCCChHHHHHHHHhHhccccccccccCCCCCCcceeEEEcCCCCeEEc
Q 029427 112 IHLNIYKDYPELLKALEDMFKFKVGEYSESEGYNGSEFVPTYEDKDGDWMLV 163 (193)
Q Consensus 112 VDL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLV 163 (193)
=||+..-+|.+|..-..+-|.-. +-++-|.|.|||..-+
T Consensus 22 e~l~~~P~~kdLl~lmr~~f~~~-------------dIaLNYrD~EGDLIRl 60 (92)
T cd06399 22 EDLSSTPLLKDLLELTRREFQRE-------------DIALNYRDAEGDLIRL 60 (92)
T ss_pred cccccCccHHHHHHHHHHHhchh-------------heeeeeecCCCCEEEE
Confidence 36888899999999999999853 2268899999998643
No 16
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=64.78 E-value=33 Score=25.74 Aligned_cols=69 Identities=19% Similarity=0.271 Sum_probs=50.7
Q ss_pred eeEEEEcCccccceeecCCCCChHHHHHHHHhHhccccccccccCCCCCCcceeEEEcCCC-CeEEccCCChHHHhhccc
Q 029427 98 YVKVSMDGAPYLRKIHLNIYKDYPELLKALEDMFKFKVGEYSESEGYNGSEFVPTYEDKDG-DWMLVGDVPWEMFITSCK 176 (193)
Q Consensus 98 ~VKV~MdG~pigRKVDL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdG-DwMLVGDvPW~mFv~svk 176 (193)
-|||+..+ .=.|-...=-+|++|...|.+-+.+. ++ +-+|.|.|.+. +...++|--++.-.+.++
T Consensus 4 vvKV~f~~---tIaIrvp~~~~y~~L~~ki~~kLkl~-~e----------~i~LsYkde~s~~~v~l~d~dle~aws~~~ 69 (80)
T cd06406 4 VVKVHFKY---TVAIQVARGLSYATLLQKISSKLELP-AE----------HITLSYKSEASGEDVILSDTNMEDVWSQAK 69 (80)
T ss_pred EEEEEEEE---EEEEEcCCCCCHHHHHHHHHHHhCCC-ch----------hcEEEeccCCCCCccCcChHHHHHHHHhhc
Confidence 47999997 34556666678999999999999875 21 23788998874 444448988888888877
Q ss_pred --eeEE
Q 029427 177 --RLRV 180 (193)
Q Consensus 177 --RLrI 180 (193)
||++
T Consensus 70 ~~~lTL 75 (80)
T cd06406 70 DGCLTL 75 (80)
T ss_pred CCeEEE
Confidence 4443
No 17
>cd06395 PB1_Map2k5 PB1 domain is essential part of the mitogen-activated protein kinase kinase 5 (Map2k5, alias MEK5) one of the key member of the signaling kinases cascade which involved in angiogenesis and early cardiovascular development. The PB1 domain of Map2k5 interacts with the PB1 domain of another members of kinase cascade MEKK2 (or MEKK3). A canonical PB1-PB1 interaction, involving heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The Map2k5 protein contains a type I PB1 domain.
Probab=55.98 E-value=22 Score=27.28 Aligned_cols=48 Identities=19% Similarity=0.286 Sum_probs=35.8
Q ss_pred cCccccceeecCCCCChHHHHHHHHhHhcc-ccccccccCCCCCCcceeEEEcCCCCeEEcc
Q 029427 104 DGAPYLRKIHLNIYKDYPELLKALEDMFKF-KVGEYSESEGYNGSEFVPTYEDKDGDWMLVG 164 (193)
Q Consensus 104 dG~pigRKVDL~~~~sY~eL~~~L~~MF~~-~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVG 164 (193)
+|..+--.||...+=+|.+++.++.+...- +.. ..-|||.|||.+-|-
T Consensus 9 ~gg~vDw~V~~~~~L~F~DvL~~I~~vlp~aT~t-------------AFeYEDE~gDRITVR 57 (91)
T cd06395 9 NGGAVDWTVQSGPQLLFRDVLDVIGQVLPEATTT-------------AFEYEDEDGDRITVR 57 (91)
T ss_pred CCCcccccccCcccccHHHHHHHHHHhccccccc-------------ceeeccccCCeeEec
Confidence 344566678877888999999999887662 211 366999999998774
No 18
>PF10411 DsbC_N: Disulfide bond isomerase protein N-terminus; InterPro: IPR018950 This is the N-terminal domain of the disulphide bond isomerase DsbC. The whole molecule is V-shaped, where each arm is a DsbC monomer of two domains linked by a hinge; and the N-termini of each monomer join to form the dimer interface at the base of the V, so are vital for dimerisation []. DsbC is required for disulphide bond formation and functions as a disulphide bond isomerase during oxidative protein-folding in bacterial periplasm. It also has chaperone activity []. ; PDB: 1EEJ_B 2IYJ_A 1TJD_A 1JZD_B 1JZO_A 1G0T_B 1T3B_A.
Probab=52.29 E-value=11 Score=25.77 Aligned_cols=17 Identities=29% Similarity=0.649 Sum_probs=14.6
Q ss_pred eeEEEcCCCCeEEccCC
Q 029427 150 VPTYEDKDGDWMLVGDV 166 (193)
Q Consensus 150 ~ltYeDkdGDwMLVGDv 166 (193)
.+.|.|.||+.+++|+.
T Consensus 34 ~i~Y~~~dg~yli~G~l 50 (57)
T PF10411_consen 34 GILYVDEDGRYLIQGQL 50 (57)
T ss_dssp EEEEEETTSSEEEES-E
T ss_pred eEEEEcCCCCEEEEeEE
Confidence 58899999999999974
No 19
>PF12426 DUF3674: RNA dependent RNA polymerase; InterPro: IPR024378 This domain is found in the RNA-directed RNA polymerase. It is located towards the N terminus and is approximately 40 amino acids in length. There is a conserved MFNLKF sequence motif. There are two completely conserved residues (E and P) that may be functionally important.
Probab=49.84 E-value=10 Score=25.32 Aligned_cols=29 Identities=31% Similarity=0.571 Sum_probs=17.6
Q ss_pred HHHHHHhHhc--cccccccccCCCCCCcceeEEEcC
Q 029427 123 LLKALEDMFK--FKVGEYSESEGYNGSEFVPTYEDK 156 (193)
Q Consensus 123 L~~~L~~MF~--~~~g~~~~~~~~~~s~~~ltYeDk 156 (193)
=..+||.||. |.++... ...-|++.|.+-
T Consensus 6 ER~aLEAMFNLKFhi~~~k-----~~~y~IP~Y~~~ 36 (41)
T PF12426_consen 6 ERSALEAMFNLKFHIGGPK-----TQPYYIPDYRGI 36 (41)
T ss_pred HHHHHHHHhceeeeeCCcc-----cccccCCCCCCc
Confidence 3679999999 5555321 123456666654
No 20
>PF06463 Mob_synth_C: Molybdenum Cofactor Synthesis C; InterPro: IPR010505 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) []. This entry represents MoaA, which belongs to a family of enzymes involved in the synthesis of metallo-cofactors (IPR000385 from INTERPRO). Each subunit of the MoaA dimer is comprised of an N-terminal SAM domain (IPR007197 from INTERPRO) that contains the [4Fe-4S] cluster typical for this family of enzymes, as well as an additional [4Fe-4S] cluster in the C-terminal domain that is unique to MoaA proteins []. The unique Fe site of the C-terminal [4Fe-4S] cluster is thought to be involved in the binding and activation of 5'-GTP. Mutations in the human MoCF biosynthesis proteins MOCS1, MOCS2 or GEPH cause MoCF Deficiency type A (MOCOD), causing the loss of activity of MoCF-containing enzymes, resulting in neurological abnormalities and death [].; GO: 0051539 4 iron, 4 sulfur cluster binding, 0006777 Mo-molybdopterin cofactor biosynthetic process, 0019008 molybdopterin synthase complex; PDB: 2FB2_A 2FB3_A 1TV8_B 1TV7_A.
Probab=44.54 E-value=51 Score=25.90 Aligned_cols=67 Identities=21% Similarity=0.292 Sum_probs=29.6
Q ss_pred eecCCCCChHHHHHHHHhHhccccccccccCCCCCCcceeEEEcCCCCeEEccCCChHHHhhccceeEEecC
Q 029427 112 IHLNIYKDYPELLKALEDMFKFKVGEYSESEGYNGSEFVPTYEDKDGDWMLVGDVPWEMFITSCKRLRVMKG 183 (193)
Q Consensus 112 VDL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVGDvPW~mFv~svkRLrImk~ 183 (193)
+--..|-+++++.+.|++-|......- .. ++.-......+..|..=++.-+-= .||.+|.||||...
T Consensus 17 ~~~~~~~~~~ei~~~l~~~~~~~~~~~---~~-~~pa~~y~~~g~~g~vG~I~~~s~-~FC~~CNRiRlTsd 83 (128)
T PF06463_consen 17 WFEEEFVPAQEILERLEERYELLPSEK---RP-NGPARYYRIPGGKGRVGFISPVSN-PFCSSCNRIRLTSD 83 (128)
T ss_dssp B-TTTB--HHHHHHHHHHHS-EEEE-----SS-T-SSEEEEETTT--EEEEE-TTTS---GGG--EEEE-TT
T ss_pred chhhcCcCHHHHHHHHHHhCCcccccc---cc-CCcceEEEECCCCcEEEEEeCCCC-CCCCcCCEEEEccC
Confidence 344778899999999999998532111 11 111111122333333333333322 49999999999653
No 21
>PRK11430 putative CoA-transferase; Provisional
Probab=42.57 E-value=24 Score=32.62 Aligned_cols=66 Identities=8% Similarity=0.100 Sum_probs=34.4
Q ss_pred cceeecCCCCChHHHHHHHHhHhccccccccccCCC---CCCcceeEEEcCCCCeEEccC---CChHHHhhccce
Q 029427 109 LRKIHLNIYKDYPELLKALEDMFKFKVGEYSESEGY---NGSEFVPTYEDKDGDWMLVGD---VPWEMFITSCKR 177 (193)
Q Consensus 109 gRKVDL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~---~~s~~~ltYeDkdGDwMLVGD---vPW~mFv~svkR 177 (193)
|+.||++++.+--.+....--.+.. .|....+.+. ...-| =+|+-+|| |+.|+- --|.-||+...|
T Consensus 197 Gq~VdvSl~~~~~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~p~-~~y~~~DG-~i~i~~~~~~~w~~l~~~lg~ 268 (381)
T PRK11430 197 GAHVDIAMFDATLSFLEHGLMAYIA-TGKSPQRLGNRHPYMAPF-DVFDTQDK-PITICCGNDKLFSALCQALEL 268 (381)
T ss_pred eeEEEeeHHHHHHHHHHHHHHHHHh-CCCCCCCCCCCCCCCCCC-CceEcCCC-cEEEEeCCHHHHHHHHHHhCC
Confidence 8888888886643332221111111 1211111110 11224 35999999 877743 478888876654
No 22
>COG0219 CspR Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]
Probab=42.39 E-value=13 Score=31.07 Aligned_cols=76 Identities=22% Similarity=0.366 Sum_probs=48.9
Q ss_pred cCccccceeecCCCCChHHHHHHH---HhHhcccc-ccccccCCCCCCcceeEEEcCCCCeEEccCC----ChHHHhh-c
Q 029427 104 DGAPYLRKIHLNIYKDYPELLKAL---EDMFKFKV-GEYSESEGYNGSEFVPTYEDKDGDWMLVGDV----PWEMFIT-S 174 (193)
Q Consensus 104 dG~pigRKVDL~~~~sY~eL~~~L---~~MF~~~~-g~~~~~~~~~~s~~~ltYeDkdGDwMLVGDv----PW~mFv~-s 174 (193)
-|-.|.-+++|..|++|++...+. .++|.++. |.- -|. -+....|||+|-|-. |=+.--. .
T Consensus 48 AGlDY~~~~~l~~h~s~e~fl~~~~~~~rl~~~tt~~~~---------~~~-~~~f~~~d~llFG~Es~GLP~~i~~~~~ 117 (155)
T COG0219 48 AGLDYHEKASLTEHDSLEAFLEAEPIGGRLFALTTKGTT---------TYT-DVSFQKGDYLLFGPESRGLPEEILDAAP 117 (155)
T ss_pred cccchHhhcceEEeCCHHHHHhhccCCceEEEEEecccc---------ccc-cccCCCCCEEEECCCCCCCCHHHHHhCc
Confidence 577899999999999999999999 56777642 211 111 144456999999976 5222222 2
Q ss_pred cceeEEecCCccccc
Q 029427 175 CKRLRVMKGSEARGL 189 (193)
Q Consensus 175 vkRLrImk~sea~gl 189 (193)
-++|||=-..++.-|
T Consensus 118 ~~~irIPm~~~~RSL 132 (155)
T COG0219 118 DRCIRIPMRPGVRSL 132 (155)
T ss_pred cceEEeccCCCCccc
Confidence 235888544444433
No 23
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=34.41 E-value=1.3e+02 Score=26.87 Aligned_cols=76 Identities=14% Similarity=0.158 Sum_probs=44.4
Q ss_pred EEcCccccceee--cCCCCChHHHHHHHHhHhcc-ccccccccCCCCCCcceeEEEcCCCCeEEccCCChHHHhhcccee
Q 029427 102 SMDGAPYLRKIH--LNIYKDYPELLKALEDMFKF-KVGEYSESEGYNGSEFVPTYEDKDGDWMLVGDVPWEMFITSCKRL 178 (193)
Q Consensus 102 ~MdG~pigRKVD--L~~~~sY~eL~~~L~~MF~~-~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVGDvPW~mFv~svkRL 178 (193)
+.+=.|+|+--+ -..+=+.+++...|+..|.. ... ...+.....| ...|..|-.=++.-+-.. ||.+|.||
T Consensus 188 ~ie~mP~g~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~---~~~~~~~~~~--~~~~~~~~ig~I~~~s~~-fC~~Cnr~ 261 (329)
T PRK13361 188 FIEEMPLGEIDERRRARHCSSDEVRAIIETRYPLTPSN---KRTGGPARYY--TMADSPIHIGFISPHSHN-FCHECNRV 261 (329)
T ss_pred EEecccCCCccchhhccCcCHHHHHHHHHHhCCcccCC---CCCCCCCeEE--EECCCCeEEEEEcCCCcc-ccccCCeE
Confidence 566678887322 44567889999999998763 211 0011011111 123444444455544454 99999999
Q ss_pred EEecC
Q 029427 179 RVMKG 183 (193)
Q Consensus 179 rImk~ 183 (193)
||-..
T Consensus 262 rlt~~ 266 (329)
T PRK13361 262 RVTAE 266 (329)
T ss_pred EEccC
Confidence 99654
No 24
>KOG3938 consensus RGS-GAIP interacting protein GIPC, contains PDZ domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=31.78 E-value=72 Score=29.50 Aligned_cols=76 Identities=25% Similarity=0.421 Sum_probs=53.9
Q ss_pred EcCccccceeecCCCCChHHHHHHHHhHhcccccc--ccccCCCCCCcceeEEEcCCCCeEEccCCChHHHh-----hcc
Q 029427 103 MDGAPYLRKIHLNIYKDYPELLKALEDMFKFKVGE--YSESEGYNGSEFVPTYEDKDGDWMLVGDVPWEMFI-----TSC 175 (193)
Q Consensus 103 MdG~pigRKVDL~~~~sY~eL~~~L~~MF~~~~g~--~~~~~~~~~s~~~ltYeDkdGDwMLVGDvPW~mFv-----~sv 175 (193)
-+|.|.|| +..|++-+||++.++.-|.+.-.+ ++. +| .+. -|=+-||-|-.-.+.|+ .-.
T Consensus 61 AHGSptg~---Ie~fsnv~ELY~kIAe~F~Is~~dIlfcT---lN--shK-----vDM~~llgGqigleDfiFAHvkGq~ 127 (334)
T KOG3938|consen 61 AHGSPTGR---IEGFSNVRELYQKIAEAFDISPDDILFCT---LN--SHK-----VDMKRLLGGQIGLEDFIFAHVKGQA 127 (334)
T ss_pred ccCCccce---ecccccHHHHHHHHHHHhcCCccceEEEe---cC--CCc-----ccHHHHhcCccChhhhhhhhhcCcc
Confidence 36778887 467899999999999999975211 010 00 011 23345888888888885 356
Q ss_pred ceeEEecCCccccccc
Q 029427 176 KRLRVMKGSEARGLGC 191 (193)
Q Consensus 176 kRLrImk~sea~gl~~ 191 (193)
|-++|+|+.++-||.+
T Consensus 128 kEv~v~KsedalGlTI 143 (334)
T KOG3938|consen 128 KEVEVVKSEDALGLTI 143 (334)
T ss_pred eeEEEEecccccceEE
Confidence 7899999999999864
No 25
>PF07929 PRiA4_ORF3: Plasmid pRiA4b ORF-3-like protein; InterPro: IPR012912 Members of this family are similar to the protein product of ORF-3 (Q44206 from SWISSPROT) found on plasmid pRiA4 in the bacterium Agrobacterium rhizogenes. This plasmid is responsible for tumourigenesis at wound sites of plants infected by this bacterium, but the ORF-3 product does not seem to be involved in the pathogenetic process []. Other proteins found in this family are annotated as being putative TnpR resolvases (Q9LCU7 from SWISSPROT, Q50439 from SWISSPROT), but no further evidence was found to back this. Moreover, another member of this family is described as a probable lexA repressor (Q7UEI4 from SWISSPROT) and in fact carries a LexA DNA binding domain (IPR006199 from INTERPRO), but no references were found to expand on this. ; PDB: 2I1S_A.
Probab=28.55 E-value=76 Score=25.78 Aligned_cols=37 Identities=24% Similarity=0.478 Sum_probs=30.1
Q ss_pred eeEEEEcCc--cccceeecCCCCChHHHHHHHHhHhccc
Q 029427 98 YVKVSMDGA--PYLRKIHLNIYKDYPELLKALEDMFKFK 134 (193)
Q Consensus 98 ~VKV~MdG~--pigRKVDL~~~~sY~eL~~~L~~MF~~~ 134 (193)
-+||..+|. +|=|.|-+..--+..+|..+|+..|+..
T Consensus 6 ~lkV~L~~~~p~iwRri~Vp~~~tl~~Lh~~Iq~afgw~ 44 (179)
T PF07929_consen 6 QLKVSLKGSKPPIWRRIEVPADITLADLHEVIQAAFGWD 44 (179)
T ss_dssp EEEEEETT-SS-EEEEEEEETT-BHHHHHHHHHHHTT--
T ss_pred EEEEEEcCCCCCeEEEEEECCCCCHHHHHHHHHHHhCcC
Confidence 478999885 8999999999999999999999999853
No 26
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=26.00 E-value=2.2e+02 Score=19.73 Aligned_cols=69 Identities=13% Similarity=0.157 Sum_probs=50.7
Q ss_pred ceeEEEEcCccc---cceeecCCCCChHHHHHHHHhHhccccccccccCCCCCCccee--EEEcCCCCeEEccC-CChHH
Q 029427 97 IYVKVSMDGAPY---LRKIHLNIYKDYPELLKALEDMFKFKVGEYSESEGYNGSEFVP--TYEDKDGDWMLVGD-VPWEM 170 (193)
Q Consensus 97 ~~VKV~MdG~pi---gRKVDL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~l--tYeDkdGDwMLVGD-vPW~m 170 (193)
.++||+++...- -+.|=++....-.+++.++.+.|++. . +..+|.| .-........|-.| .|+..
T Consensus 3 ~~lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~l~-~--------~~~~y~L~~~~~~~~~er~L~~~E~pl~i 73 (93)
T PF00788_consen 3 GVLRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKFGLA-E--------DPSDYCLVEVEESGGEERPLDDDECPLQI 73 (93)
T ss_dssp EEEEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHTTTS-S--------SGGGEEEEEEECTTTEEEEETTTSBHHHH
T ss_pred eEEEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHhCCC-C--------CCCCEEEEEEEcCCCEEEEcCCCCchHHH
Confidence 478999987753 67888899999999999999999982 2 2457999 45555666666544 47776
Q ss_pred Hhhc
Q 029427 171 FITS 174 (193)
Q Consensus 171 Fv~s 174 (193)
+..-
T Consensus 74 ~~~~ 77 (93)
T PF00788_consen 74 QLQW 77 (93)
T ss_dssp HHTT
T ss_pred HHhC
Confidence 6543
No 27
>PF02013 CBM_10: Cellulose or protein binding domain; InterPro: IPR002883 This domain is found in two distinct sets of proteins with different functions. Those found in aerobic bacteria bind cellulose (or other carbohydrates); but in anaerobic fungi they are protein binding domains, referred to as dockerin domains or docking domains. They are believed to be responsible for the assembly of a multiprotein cellulase/hemicellulase complex, similar to the cellulosome found in certain anaerobic bacteria. The recycling of photosynthetically fixed carbon in plant cell walls is a key microbial process. Enzyme systems that attack the plant cell wall contain noncatalytic carbohydrate-binding modules that mediate attachment to this composite structure and play a pivotal role in maximizing the hydrolytic process. In anaerobes, the degradation is carried out by a high molecular weight, multifunctional complex termed the cellulosome. This consists of a number of independent enzyme components, each of which contains a conserved 40-residue dockerin domain, which functions to bind the enzyme to a cohesin domain within the scaffoldin protein [, ]. In anaerobic bacteria that degrade plant cell walls, exemplified by Clostridium thermocellum, the dockerin domains of the catalytic polypeptides can bind equally well to any cohesin from the same organism. More recently, anaerobic fungi, typified by Piromyces equi, have been suggested to also synthesise a cellulosome complex, although the dockerin sequences of the bacterial and fungal enzymes are completely different []. For example, the fungal enzymes contain one, two or three copies of the dockerin sequence in tandem within the catalytic polypeptide. In contrast, all the C. thermocellum cellulosome catalytic components contain a single dockerin domain. The anaerobic bacterial dockerins are homologous to EF hands (calcium-binding motifs) and require calcium for activity whereas the fungal dockerin does not require calcium. Finally, the interaction between cohesin and dockerin appears to be species specific in bacteria, there is almost no species specificity of binding within fungal species and no identified sites that distinguish different species. The structure of dockerin from P. equi contains two helical stretches and four short beta-strands which form an antiparallel sheet structure adjacent to an additional short twisted parallel strand. The N- and C-termini are adjacent to each other. Aerobic bacteria contain related regions, however these appear to function as cellulose/carbohydrate binding domains.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2J4M_A 2J4N_A 1E8R_A 1QLD_A 1E8P_A 1E8Q_A.
Probab=23.34 E-value=22 Score=22.91 Aligned_cols=12 Identities=42% Similarity=0.869 Sum_probs=8.9
Q ss_pred eeEEEcCCCCeE
Q 029427 150 VPTYEDKDGDWM 161 (193)
Q Consensus 150 ~ltYeDkdGDwM 161 (193)
.+.|.|.+|+|=
T Consensus 16 ~v~y~d~~g~WG 27 (36)
T PF02013_consen 16 EVVYTDDDGGWG 27 (36)
T ss_dssp --SEEETTEEEE
T ss_pred ceEEcCCCCCEe
Confidence 688999999983
No 28
>KOG3606 consensus Cell polarity protein PAR6 [Signal transduction mechanisms]
Probab=23.08 E-value=1.2e+02 Score=28.26 Aligned_cols=78 Identities=23% Similarity=0.395 Sum_probs=54.1
Q ss_pred ceeEEEEcCccccceeecCC--CCChHHHHHHHHhHhccccccccccCCCCCCcceeEEEcCCCCeEEcc-CCChHHHhh
Q 029427 97 IYVKVSMDGAPYLRKIHLNI--YKDYPELLKALEDMFKFKVGEYSESEGYNGSEFVPTYEDKDGDWMLVG-DVPWEMFIT 173 (193)
Q Consensus 97 ~~VKV~MdG~pigRKVDL~~--~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVG-DvPW~mFv~ 173 (193)
.-||-..|-. =|..-|.+ -.+|++++.-|++.-.++ +.++.+-|.|.-||.+-+- |.-+.--++
T Consensus 19 veVKSKFdaE--fRRfsl~r~~~~~f~~F~~Lv~~~H~i~-----------nvdvllgY~d~hgDLLPinNDDn~~ka~~ 85 (358)
T KOG3606|consen 19 VEVKSKFDAE--FRRFSLPRHSASSFDEFYSLVEHLHHIP-----------NVDVLLGYADTHGDLLPINNDDNLHKALS 85 (358)
T ss_pred EEeeccccch--hheecccccCcccHHHHHHHHHHHhcCC-----------CceEEEEEecCCCceecccCchhHHHHhh
Confidence 4455555443 45555544 468999999998887765 3467899999999999775 556666666
Q ss_pred ccc---eeEEecCCccc
Q 029427 174 SCK---RLRVMKGSEAR 187 (193)
Q Consensus 174 svk---RLrImk~sea~ 187 (193)
+++ ||.|-|..||.
T Consensus 86 sa~PlLR~~iQkr~ea~ 102 (358)
T KOG3606|consen 86 SARPLLRLLIQKREEAD 102 (358)
T ss_pred ccCchhhhhhhhhhhhh
Confidence 766 67777776653
No 29
>PF09676 TraV: Type IV conjugative transfer system lipoprotein (TraV); InterPro: IPR014118 This entry represents TraV, a component of a conjugative type IV secretion system. TraV is an outer membrane lipoprotein that is believed to interact with the secretin TraK [, , ]. This protein contains three conserved cysteines in the N-terminal half.
Probab=21.59 E-value=59 Score=24.70 Aligned_cols=20 Identities=35% Similarity=0.527 Sum_probs=16.5
Q ss_pred CcceeEEEcCCCCeEEccCC
Q 029427 147 SEFVPTYEDKDGDWMLVGDV 166 (193)
Q Consensus 147 s~~~ltYeDkdGDwMLVGDv 166 (193)
.-|+.-|+|.+||+..-|.|
T Consensus 91 RiwiaP~~D~~g~l~~~~~V 110 (119)
T PF09676_consen 91 RIWIAPWEDADGDLHDPGYV 110 (119)
T ss_pred EEEEeeeECCCCCEeccceE
Confidence 35788999999999887765
No 30
>PF11576 DUF3236: Protein of unknown function (DUF3236); InterPro: IPR012019 This family of proteins with unknown function appears to be restricted to Methanobacteria. ; PDB: 3BRC_B.
Probab=21.36 E-value=39 Score=28.31 Aligned_cols=15 Identities=40% Similarity=0.665 Sum_probs=8.8
Q ss_pred ccccccccCCCCCCc
Q 029427 9 LEATELRLGLPGTQE 23 (193)
Q Consensus 9 l~~TELrLGLPG~~~ 23 (193)
|=..-=|||.||+++
T Consensus 95 lvIARGRLGvPGSGS 109 (154)
T PF11576_consen 95 LVIARGRLGVPGSGS 109 (154)
T ss_dssp EEEEEEE-SSTTS-E
T ss_pred EEEEcccccCCCCcc
Confidence 333445999999875
No 31
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=20.40 E-value=3.4e+02 Score=19.54 Aligned_cols=28 Identities=21% Similarity=0.077 Sum_probs=20.7
Q ss_pred ccccceeecCCCCChHHHHHHHHhHhcccc
Q 029427 106 APYLRKIHLNIYKDYPELLKALEDMFKFKV 135 (193)
Q Consensus 106 ~pigRKVDL~~~~sY~eL~~~L~~MF~~~~ 135 (193)
...=|+++ ..-...+|...|+.+|++..
T Consensus 13 ~~~ekr~~--~~~Tv~~lK~kl~~~~G~~~ 40 (84)
T cd01789 13 FSFEKKYS--RGLTIAELKKKLELVVGTPA 40 (84)
T ss_pred eeeeEecC--CCCcHHHHHHHHHHHHCCCc
Confidence 33445554 55689999999999999753
Done!