Query 029427
Match_columns 193
No_of_seqs 220 out of 580
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 20:57:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029427.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029427hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vd2_A Protein kinase C, IOTA 96.8 0.0028 9.6E-08 47.0 6.0 56 97-164 7-62 (89)
2 1wmh_B Partitioning defective- 96.5 0.0068 2.3E-07 44.9 6.6 69 97-176 7-76 (86)
3 2kkc_A Sequestosome-1; P62, PB 95.3 0.032 1.1E-06 42.2 5.7 61 96-166 5-80 (102)
4 2ktr_A Sequestosome-1; autopha 94.4 0.086 2.9E-06 40.9 6.1 62 95-166 19-95 (117)
5 1q1o_A Cell division control p 93.3 0.21 7E-06 37.6 6.2 74 97-176 6-86 (98)
6 2bkf_A Zinc-finger protein NBR 89.5 0.94 3.2E-05 33.5 6.2 54 98-164 8-61 (87)
7 1wj6_A KIAA0049 protein, RSGI 89.3 1.1 3.9E-05 33.9 6.7 63 98-175 16-78 (101)
8 1pqs_A Cell division control p 88.2 0.47 1.6E-05 34.0 3.7 57 114-176 8-65 (77)
9 1oey_J P40-PHOX, neutrophil cy 87.2 0.91 3.1E-05 34.7 4.9 40 113-165 28-67 (107)
10 1oey_A P67-PHOX, neutrophil cy 86.8 3.2 0.00011 30.1 7.6 69 98-180 7-78 (83)
11 1e8p_A Endoglucanase, dockerin 63.1 2 6.7E-05 28.4 0.5 13 150-162 20-32 (46)
12 2npt_A Dual specificity mitoge 42.0 52 0.0018 24.8 5.4 55 97-164 15-71 (106)
13 2yim_A Probable alpha-methylac 39.3 11 0.00039 33.2 1.7 26 151-176 225-253 (360)
14 2j4m_A Endoglucanase 45A; dock 38.4 7.6 0.00026 29.3 0.3 13 150-162 21-33 (100)
15 2i1s_A Hypothetical protein; m 35.9 40 0.0014 26.8 4.3 38 97-134 9-48 (188)
16 3o27_A Putative uncharacterize 30.6 39 0.0013 23.8 2.9 18 146-163 42-59 (68)
17 4ed9_A CAIB/BAIF family protei 25.7 24 0.00082 31.4 1.4 28 148-177 242-272 (385)
18 1xk7_A Crotonobetainyl-COA:car 22.7 22 0.00074 31.9 0.5 25 152-177 241-268 (408)
19 3brc_A Conserved protein of un 22.4 25 0.00084 28.4 0.7 15 9-23 96-110 (156)
20 3bux_B E3 ubiquitin-protein li 20.3 1E+02 0.0036 27.5 4.4 47 116-163 248-295 (329)
No 1
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=96.76 E-value=0.0028 Score=46.97 Aligned_cols=56 Identities=23% Similarity=0.307 Sum_probs=44.0
Q ss_pred ceeEEEEcCccccceeecCCCCChHHHHHHHHhHhccccccccccCCCCCCcceeEEEcCCCCeEEcc
Q 029427 97 IYVKVSMDGAPYLRKIHLNIYKDYPELLKALEDMFKFKVGEYSESEGYNGSEFVPTYEDKDGDWMLVG 164 (193)
Q Consensus 97 ~~VKV~MdG~pigRKVDL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVG 164 (193)
.=||++..|.-+ .+.+..--+|++|...|.++|.+.. +..+++.|.|.|||+.-+-
T Consensus 7 vkvK~~~~gdi~--~~~v~~~i~~~~L~~kv~~~~~~~~----------~~~f~lky~DEeGD~itis 62 (89)
T 1vd2_A 7 VRVKAYYRGDIM--ITHFEPSISFEGLCNEVRDMCSFDN----------EQLFTMKWIDEEGDPCTVS 62 (89)
T ss_dssp EEEEEESSSCEE--EEEECTTCCHHHHHHHHHHHTTCCS----------SCCEEEEECCSSSCCEECC
T ss_pred EEEEEEeCCeEE--EEECCCCCCHHHHHHHHHHHhCCCC----------CCeEEEEEECCCCCccccc
Confidence 467889999844 4444446799999999999999752 2468999999999987654
No 2
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=96.52 E-value=0.0068 Score=44.85 Aligned_cols=69 Identities=16% Similarity=0.213 Sum_probs=52.2
Q ss_pred ceeEEEEcCccccceeecCCCCChHHHHHHHHhHhccccccccccCCCCCCcceeEEEcCCCCeEEccCC-ChHHHhhcc
Q 029427 97 IYVKVSMDGAPYLRKIHLNIYKDYPELLKALEDMFKFKVGEYSESEGYNGSEFVPTYEDKDGDWMLVGDV-PWEMFITSC 175 (193)
Q Consensus 97 ~~VKV~MdG~pigRKVDL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVGDv-PW~mFv~sv 175 (193)
.-||...|..--=-.+|-..-.+|++|+.-|+++|.+. ..+|++.|.|.|||++-+-+. -..+=+.++
T Consensus 7 l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~-----------~~~f~i~Y~D~dGDLlpInnDdnl~~Al~~a 75 (86)
T 1wmh_B 7 VEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIP-----------GLDVLLGYTDAHGDLLPLTNDDSLHRALASG 75 (86)
T ss_dssp EEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCT-----------TCCCEEEEECTTSCEEECCSHHHHHHHTTSS
T ss_pred EEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcCCC-----------CCCEEEEEECCCCCEeeecCHHHHHHHHHhC
Confidence 45788888874444566667789999999999999853 236899999999999988654 444445666
Q ss_pred c
Q 029427 176 K 176 (193)
Q Consensus 176 k 176 (193)
|
T Consensus 76 ~ 76 (86)
T 1wmh_B 76 P 76 (86)
T ss_dssp S
T ss_pred C
Confidence 6
No 3
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=95.30 E-value=0.032 Score=42.19 Aligned_cols=61 Identities=18% Similarity=0.259 Sum_probs=44.4
Q ss_pred CceeEEEEcCc----cccceeecCC-----------CCChHHHHHHHHhHhccccccccccCCCCCCcceeEEEcCCCCe
Q 029427 96 GIYVKVSMDGA----PYLRKIHLNI-----------YKDYPELLKALEDMFKFKVGEYSESEGYNGSEFVPTYEDKDGDW 160 (193)
Q Consensus 96 ~~~VKV~MdG~----pigRKVDL~~-----------~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDw 160 (193)
+.-||++..|. .=-|++-|.. -.+|++|...++++|..- .+..|.+.|.|.|||+
T Consensus 5 ~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~l----------~~~~f~l~Y~DedGDl 74 (102)
T 2kkc_A 5 SLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPAL----------RPGGFQAHYRAERGDL 74 (102)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTTS----------CSSCEEEEEECTTCCE
T ss_pred eEEEEEEEccCCCCCCceEEEEeccCCCcccccccccccHHHHHHHHHHHcccc----------CCCcEEEEEECCCCCE
Confidence 35688888752 2345555532 248999999999999842 1246899999999999
Q ss_pred EEccCC
Q 029427 161 MLVGDV 166 (193)
Q Consensus 161 MLVGDv 166 (193)
.-+-+.
T Consensus 75 ItiSsD 80 (102)
T 2kkc_A 75 VAFSSD 80 (102)
T ss_dssp EEECSH
T ss_pred EEecCH
Confidence 877654
No 4
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=94.37 E-value=0.086 Score=40.86 Aligned_cols=62 Identities=19% Similarity=0.235 Sum_probs=44.5
Q ss_pred CCceeEEEEcC----ccccceeecC-----------CCCChHHHHHHHHhHhccccccccccCCCCCCcceeEEEcCCCC
Q 029427 95 SGIYVKVSMDG----APYLRKIHLN-----------IYKDYPELLKALEDMFKFKVGEYSESEGYNGSEFVPTYEDKDGD 159 (193)
Q Consensus 95 ~~~~VKV~MdG----~pigRKVDL~-----------~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGD 159 (193)
...-||++..| ..==|++-|. .-.+|++|...++++|..- .+..|.+.|.|.|||
T Consensus 19 ~~l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L----------~~~~f~l~YkDEdGD 88 (117)
T 2ktr_A 19 GSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPAL----------RPGGFQAHYRAERGD 88 (117)
T ss_dssp -CEEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTS----------CSSCEEEEEECTTCC
T ss_pred ccEEEEEEEecCCCCCCcEEEEEeccCCCccccccccCCCHHHHHHHHHHHcccc----------CCCcEEEEEECCCCC
Confidence 35788999975 1223555553 1359999999999999732 123689999999999
Q ss_pred eEEccCC
Q 029427 160 WMLVGDV 166 (193)
Q Consensus 160 wMLVGDv 166 (193)
+.-+-..
T Consensus 89 lItISsD 95 (117)
T 2ktr_A 89 LVAFSSD 95 (117)
T ss_dssp EEEECSH
T ss_pred EEEecCH
Confidence 9877653
No 5
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=93.27 E-value=0.21 Score=37.64 Aligned_cols=74 Identities=15% Similarity=0.320 Sum_probs=54.0
Q ss_pred ceeEEEEcCc------cccceeecCCCCChHHHHHHHHhHhccccccccccCCCCCCcceeEEEcCCCCeEEccC-CChH
Q 029427 97 IYVKVSMDGA------PYLRKIHLNIYKDYPELLKALEDMFKFKVGEYSESEGYNGSEFVPTYEDKDGDWMLVGD-VPWE 169 (193)
Q Consensus 97 ~~VKV~MdG~------pigRKVDL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVGD-vPW~ 169 (193)
.-|||+-+.. .=.|.|=...--+|++|+..+.+-|.+..+. .. .....+-|+|.|||+...++ .=|+
T Consensus 6 ikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~-----~i-~~~~klkYkDEdGD~Vtl~sddDl~ 79 (98)
T 1q1o_A 6 ILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTHNN-----NI-SPITKIKYQDEDGDFVVLGSDEDWN 79 (98)
T ss_dssp EEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHCSS-----CC-CCCCCEEEECSSSCEEEECSHHHHH
T ss_pred EEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCccc-----cc-cceeEEEEEcCCCCEEEEcCHHHHH
Confidence 4678887742 1236666778889999999999999964111 00 13468999999999988776 5899
Q ss_pred HHhhccc
Q 029427 170 MFITSCK 176 (193)
Q Consensus 170 mFv~svk 176 (193)
|-+++++
T Consensus 80 ~A~e~~~ 86 (98)
T 1q1o_A 80 VAKEMLA 86 (98)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888763
No 6
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=89.45 E-value=0.94 Score=33.46 Aligned_cols=54 Identities=7% Similarity=0.112 Sum_probs=42.4
Q ss_pred eeEEEEcCccccceeecCCCCChHHHHHHHHhHhccccccccccCCCCCCcceeEEEcCCCCeEEcc
Q 029427 98 YVKVSMDGAPYLRKIHLNIYKDYPELLKALEDMFKFKVGEYSESEGYNGSEFVPTYEDKDGDWMLVG 164 (193)
Q Consensus 98 ~VKV~MdG~pigRKVDL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVG 164 (193)
=+||.-.|...=--|.-..--++++|...+..+|+++ .++++|-|.|||-.-|=
T Consensus 8 ~lkV~f~ge~~rf~vs~~~~~tweel~~mvk~~f~L~-------------~~~ikY~DEenD~v~i~ 61 (87)
T 2bkf_A 8 TLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN-------------TIQIKYLDEENEEVSIN 61 (87)
T ss_dssp EEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTCS-------------SEEEEEECTTSCEEEEC
T ss_pred EEEEEEcCCeeEEEeccCCCCCHHHHHHHHHHHcCCC-------------ceEEEEEcCCCCEEEEe
Confidence 3688888886544564445778999999999999975 45899999999987663
No 7
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=89.34 E-value=1.1 Score=33.90 Aligned_cols=63 Identities=6% Similarity=0.065 Sum_probs=48.2
Q ss_pred eeEEEEcCccccceeecCCCCChHHHHHHHHhHhccccccccccCCCCCCcceeEEEcCCCCeEEccCCChHHHhhcc
Q 029427 98 YVKVSMDGAPYLRKIHLNIYKDYPELLKALEDMFKFKVGEYSESEGYNGSEFVPTYEDKDGDWMLVGDVPWEMFITSC 175 (193)
Q Consensus 98 ~VKV~MdG~pigRKVDL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVGDvPW~mFv~sv 175 (193)
=+||.-.|...=--|.-..--++++|...+..+|+++ .+++.|-|.|||-.-| ..+.+|-+.+
T Consensus 16 ~lkV~f~ge~~rF~Vs~~~~~tweel~~mvk~~f~L~-------------~~~IkY~DEenD~V~i--~Sq~E~eEAl 78 (101)
T 1wj6_A 16 TLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN-------------TIQIKYLDEENEEVSI--NSQGEYEEAL 78 (101)
T ss_dssp EEEEEETTEEEEEEESCTTTSCHHHHHHHHHHHHCCS-------------SBCCEEECTTSCEECC--CSHHHHHHHH
T ss_pred EEEEEEcCCeeEEEecCCCCCCHHHHHHHHHHHcCCC-------------ceEEEEecCCCCEEEE--ecHHHHHHHH
Confidence 4689999986555565555778999999999999975 3589999999999877 3466665444
No 8
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=88.21 E-value=0.47 Score=34.00 Aligned_cols=57 Identities=16% Similarity=0.330 Sum_probs=41.9
Q ss_pred cCCCCChHHHHHHHHhHhccccccccccCCCCCCcceeEEEcCCCCeEEccC-CChHHHhhccc
Q 029427 114 LNIYKDYPELLKALEDMFKFKVGEYSESEGYNGSEFVPTYEDKDGDWMLVGD-VPWEMFITSCK 176 (193)
Q Consensus 114 L~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVGD-vPW~mFv~svk 176 (193)
...--+|++|...+.+-|..... .+ ......+-|+|.|||+...++ .=|+|-+.++|
T Consensus 8 V~~~i~f~~L~~kI~~kl~~~~~-----~~-~~~~~~lkYkDEdGD~Vti~sddDl~~A~~~~~ 65 (77)
T 1pqs_A 8 VEKVWNFDDLIMAINSKISNTHN-----NN-ISPITKIKYQDEDGDFVVLGSDEDWNVAKEMLA 65 (77)
T ss_dssp CTTCCCSHHHHHHHHHHTTTTTS-----SC-SCSTTCCEEEETTTEEEECCSTTHHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHHHHccccc-----cc-ccceeEEEEEcCCCCEEEEcCHHHHHHHHHHHH
Confidence 44556899999999999984210 00 124568999999999987765 58999888764
No 9
>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=87.17 E-value=0.91 Score=34.74 Aligned_cols=40 Identities=20% Similarity=0.297 Sum_probs=32.8
Q ss_pred ecCCCCChHHHHHHHHhHhccccccccccCCCCCCcceeEEEcCCCCeEEccC
Q 029427 113 HLNIYKDYPELLKALEDMFKFKVGEYSESEGYNGSEFVPTYEDKDGDWMLVGD 165 (193)
Q Consensus 113 DL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVGD 165 (193)
||+..-.|.+|+.-..+-|.-. +-+|-|.|.|||+.-+=|
T Consensus 28 dl~~~P~ykdLl~lmr~~F~~~-------------DIaLNYrD~eGDLIrild 67 (107)
T 1oey_J 28 DLSSTPLLKDLLELTRREFQRE-------------DIALNYRDAEGDLVRLLS 67 (107)
T ss_dssp CTTCCCCHHHHHHHHHHHHCCS-------------SEEEEEECTTSCEEECCS
T ss_pred ccccCCCHHHHHHHHHHHhccc-------------ceeeeeecCCCCEEEEcc
Confidence 5778889999999999999842 337999999999976544
No 10
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=86.84 E-value=3.2 Score=30.09 Aligned_cols=69 Identities=12% Similarity=0.133 Sum_probs=53.9
Q ss_pred eeEEEEcCccccceeecCCCCChHHHHHHHHhHhccccccccccCCCCCCcceeEEEc-CCCCeEEccCCChHHHhhccc
Q 029427 98 YVKVSMDGAPYLRKIHLNIYKDYPELLKALEDMFKFKVGEYSESEGYNGSEFVPTYED-KDGDWMLVGDVPWEMFITSCK 176 (193)
Q Consensus 98 ~VKV~MdG~pigRKVDL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeD-kdGDwMLVGDvPW~mFv~svk 176 (193)
=|||+-. +.-.|....=-+|.+|...|.+-+... ++ +-+|-|.| .+|.|++.+|.-++.-...++
T Consensus 7 ~VKV~~~---~tvairvp~~~~y~~L~~~l~~kL~l~-~~----------~~~LsYk~~~s~~~vi~~d~dl~~aw~~~~ 72 (83)
T 1oey_A 7 TLKVHYK---YTVVMKTQPGLPYSQVRDMVSKKLELR-LE----------HTKLSYRPRDSNELVPLSEDSMKDAWGQVK 72 (83)
T ss_dssp EEEEESS---SEEEEEECTTCCHHHHHHHHHHHTTCC-GG----------GCCEEECCTTCSSCEECCTTTHHHHHTTCB
T ss_pred EEEEEEE---EEEEEECCCCCCHHHHHHHHHHHhCCC-cc----------eeEEEeeCCCCCCeeccChHHHHHHHHhcc
Confidence 4566666 777888888889999999999999874 21 12689999 688899999999998877744
Q ss_pred --eeEE
Q 029427 177 --RLRV 180 (193)
Q Consensus 177 --RLrI 180 (193)
||++
T Consensus 73 n~~LtL 78 (83)
T 1oey_A 73 NYCLTL 78 (83)
T ss_dssp TTEEEE
T ss_pred CCcEEE
Confidence 5654
No 11
>1e8p_A Endoglucanase, dockerin; cellulose docking domain, cellulase; NMR {Piromyces equi} SCOP: g.55.1.1 PDB: 1e8q_A
Probab=63.11 E-value=2 Score=28.38 Aligned_cols=13 Identities=31% Similarity=0.741 Sum_probs=11.3
Q ss_pred eeEEEcCCCCeEE
Q 029427 150 VPTYEDKDGDWML 162 (193)
Q Consensus 150 ~ltYeDkdGDwML 162 (193)
.++|+|.||||=.
T Consensus 20 ~V~YtD~dG~WGV 32 (46)
T 1e8p_A 20 KVEYTDASGQWGV 32 (46)
T ss_dssp CEEEEETTEEEEE
T ss_pred eEEEEcCCCcccc
Confidence 5899999999954
No 12
>2npt_A Dual specificity mitogen-activated protein kinase; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_A 1wi0_A
Probab=42.02 E-value=52 Score=24.77 Aligned_cols=55 Identities=16% Similarity=0.297 Sum_probs=39.0
Q ss_pred ceeEEEEc-CccccceeecCCCCChHHHHHHHHhHhcc-ccccccccCCCCCCcceeEEEcCCCCeEEcc
Q 029427 97 IYVKVSMD-GAPYLRKIHLNIYKDYPELLKALEDMFKF-KVGEYSESEGYNGSEFVPTYEDKDGDWMLVG 164 (193)
Q Consensus 97 ~~VKV~Md-G~pigRKVDL~~~~sY~eL~~~L~~MF~~-~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVG 164 (193)
.-+.+... |..+--.||-..+=+|.+|+.++.+...- +. -..-|||.|||.+-|-
T Consensus 15 lVIRIk~p~~g~vDwaV~~~~~L~FrDvL~~I~~vmP~aT~-------------TAFeYEDE~gDRITVR 71 (106)
T 2npt_A 15 LVIRIKIPNSGAVDWTVHSGPQLLFRDVLDVIGQVLPEATT-------------TAFEYEDEDGDRITVR 71 (106)
T ss_dssp EEEEEEETTTEEEEEEECC--CCCHHHHHHHHHHHSTTSCC-------------SEEEEECTTSCEEEEC
T ss_pred eEEEEECCCCCccccccCCcccccHHHHHHHHHHhCcccee-------------eeeeeccccCCeeEEc
Confidence 34456655 56677778877778999999999887662 21 1477999999998874
No 13
>2yim_A Probable alpha-methylacyl-COA racemase MCR (2-methylacyl-COA racemase) (2-arylpropionyl-COA...; isomerase, methyl-COA racemase; HET: MC4; 1.41A {Mycobacterium tuberculosis} PDB: 2gce_A* 1x74_A* 2gd0_A* 2gd2_A* 2gd6_A* 2gci_A*
Probab=39.31 E-value=11 Score=33.22 Aligned_cols=26 Identities=27% Similarity=0.454 Sum_probs=19.8
Q ss_pred eEEEcCCCCeEEcc---CCChHHHhhccc
Q 029427 151 PTYEDKDGDWMLVG---DVPWEMFITSCK 176 (193)
Q Consensus 151 ltYeDkdGDwMLVG---DvPW~mFv~svk 176 (193)
=+|+-+||-|+.|+ |--|+.||...-
T Consensus 225 ~~y~t~DG~~i~i~~~~~~~w~~l~~~lg 253 (360)
T 2yim_A 225 DTYECADGRYVAVGAIEPQFYAAMLAGLG 253 (360)
T ss_dssp EEEECTTSCEEEEECCSHHHHHHHHHHHT
T ss_pred CeEECCCCCEEEEEeCCHHHHHHHHHHhC
Confidence 36999999888887 345888887554
No 14
>2j4m_A Endoglucanase 45A; dockerin, cellulosome, protein binding, small cysteine-rich; NMR {Piromyces equi} PDB: 2j4n_A
Probab=38.43 E-value=7.6 Score=29.31 Aligned_cols=13 Identities=31% Similarity=0.741 Sum_probs=11.3
Q ss_pred eeEEEcCCCCeEE
Q 029427 150 VPTYEDKDGDWML 162 (193)
Q Consensus 150 ~ltYeDkdGDwML 162 (193)
.++|.|.||||=.
T Consensus 21 ~V~YtD~dG~WGV 33 (100)
T 2j4m_A 21 KVEYTDASGQWGV 33 (100)
T ss_dssp CCCEESSSCEEEE
T ss_pred eEEEEcCCCccce
Confidence 6899999999954
No 15
>2i1s_A Hypothetical protein; methanosarcina mazei,MAD, PSI-2,MCSG, structural genomics, protein structure initiative; 2.30A {Methanosarcina mazei} SCOP: d.343.1.1
Probab=35.93 E-value=40 Score=26.75 Aligned_cols=38 Identities=21% Similarity=0.409 Sum_probs=34.7
Q ss_pred ceeEEEEcCc--cccceeecCCCCChHHHHHHHHhHhccc
Q 029427 97 IYVKVSMDGA--PYLRKIHLNIYKDYPELLKALEDMFKFK 134 (193)
Q Consensus 97 ~~VKV~MdG~--pigRKVDL~~~~sY~eL~~~L~~MF~~~ 134 (193)
--+||..+|. +|=|.|.+..--+..+|..+|+..|+..
T Consensus 9 y~lrV~L~~~~p~iWRri~Vp~~~TL~~LH~vIq~afgw~ 48 (188)
T 2i1s_A 9 YHLKLSIKGITPQIWRRIQVPENYTFLDLHKAIQAVMDWE 48 (188)
T ss_dssp EEEEEEETTCSSCEEEEEEEETTCBHHHHHHHHHHHTTCC
T ss_pred EEEEEEECCCCCCeEEEEEECCCCCHHHHHHHHHHHhCCC
Confidence 4579999986 7999999999999999999999999964
No 16
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=30.57 E-value=39 Score=23.79 Aligned_cols=18 Identities=39% Similarity=0.650 Sum_probs=15.5
Q ss_pred CCcceeEEEcCCCCeEEc
Q 029427 146 GSEFVPTYEDKDGDWMLV 163 (193)
Q Consensus 146 ~s~~~ltYeDkdGDwMLV 163 (193)
+-++.++++|++|+.+|+
T Consensus 42 gD~fel~ve~kdgeIvLc 59 (68)
T 3o27_A 42 DDTFILNMEQKDGDIVLS 59 (68)
T ss_dssp TCCEEEEEEEETTEEEEE
T ss_pred CCEEEEEEecCCCeEEEE
Confidence 457899999999999885
No 17
>4ed9_A CAIB/BAIF family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; HET: NHE; 1.95A {Brucella suis}
Probab=25.69 E-value=24 Score=31.41 Aligned_cols=28 Identities=14% Similarity=0.201 Sum_probs=19.9
Q ss_pred cceeEEEcCCCCeEEccCC---ChHHHhhccce
Q 029427 148 EFVPTYEDKDGDWMLVGDV---PWEMFITSCKR 177 (193)
Q Consensus 148 ~~~ltYeDkdGDwMLVGDv---PW~mFv~svkR 177 (193)
-|. +|+-+|| |+.|+-. -|+.||...-|
T Consensus 242 py~-~y~t~DG-~i~v~~~~~~~w~~l~~~lg~ 272 (385)
T 4ed9_A 242 PYQ-TLSVSDG-YFIIACGNDGQFGKLSTLLGI 272 (385)
T ss_dssp SEE-EEEETTE-EEEEECCSHHHHHHHHHHTTC
T ss_pred Ccc-ceecCCC-cEEEEeCCHHHHHHHHHHcCC
Confidence 354 7999999 7777643 58888875543
No 18
>1xk7_A Crotonobetainyl-COA:carnitine COA-transferase; CAIB, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics; 1.60A {Escherichia coli} SCOP: c.123.1.1 PDB: 1xk6_A 1xvt_A* 1xvu_A* 1xvv_A* 1xa3_A* 1xa4_A*
Probab=22.70 E-value=22 Score=31.88 Aligned_cols=25 Identities=16% Similarity=0.226 Sum_probs=18.5
Q ss_pred EEEcCCCCeEEcc---CCChHHHhhccce
Q 029427 152 TYEDKDGDWMLVG---DVPWEMFITSCKR 177 (193)
Q Consensus 152 tYeDkdGDwMLVG---DvPW~mFv~svkR 177 (193)
+|+-+|| |+.++ |--|+.||...-|
T Consensus 241 ~y~t~DG-~i~i~~~~~~~w~~l~~~lg~ 268 (408)
T 1xk7_A 241 LYKCADG-YIVMELVGITQIEECFKDIGL 268 (408)
T ss_dssp EEEETTE-EEEEECCSHHHHHHHHHHHTC
T ss_pred ceecCCC-eEEEEeCCHHHHHHHHHHcCC
Confidence 6999999 76664 4469999876543
No 19
>3brc_A Conserved protein of unknown function; methanobacterium thermoautotrophicum, STR genomics, MCSG, PSI-2; 1.60A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=22.38 E-value=25 Score=28.38 Aligned_cols=15 Identities=40% Similarity=0.665 Sum_probs=10.7
Q ss_pred ccccccccCCCCCCc
Q 029427 9 LEATELRLGLPGTQE 23 (193)
Q Consensus 9 l~~TELrLGLPG~~~ 23 (193)
|=..-=|||.||+++
T Consensus 96 lvIARGRLGvPGSGS 110 (156)
T 3brc_A 96 LVIARGRLGVPGSGS 110 (156)
T ss_dssp EEEEEEECSSTTSCE
T ss_pred EEEEcccccCCCCcc
Confidence 334445999999875
No 20
>3bux_B E3 ubiquitin-protein ligase CBL; TKB, signal transduction, proto-oncogene, complex, ATP-binding, glycoprotein, kinase, membrane, nucleotide-binding; HET: PTR; 1.35A {Homo sapiens} SCOP: a.39.1.7 a.48.1.1 d.93.1.1 PDB: 1yvh_A* 3bun_B* 3buo_B* 3bum_B* 3buw_B* 3ob1_B* 3ob2_B* 3plf_B* 2cbl_A* 1b47_A 3pfv_A*
Probab=20.26 E-value=1e+02 Score=27.46 Aligned_cols=47 Identities=17% Similarity=0.270 Sum_probs=29.1
Q ss_pred CCCChHHHHHHHHhHhccccccccccCC-CCCCcceeEEEcCCCCeEEc
Q 029427 116 IYKDYPELLKALEDMFKFKVGEYSESEG-YNGSEFVPTYEDKDGDWMLV 163 (193)
Q Consensus 116 ~~~sY~eL~~~L~~MF~~~~g~~~~~~~-~~~s~~~ltYeDkdGDwMLV 163 (193)
+|-+|+|....|++--.-. |.+.-|-. ..-..|.+.|.++||+.+..
T Consensus 248 aFlTydEv~~~L~~~~~kp-GsYIfR~ScTrlGqwAIgyV~~~~~I~qt 295 (329)
T 3bux_B 248 AFLTYDEVKARLQKFIHKP-GSYIFRLSCTRLGQWAIGYVTADGNILQT 295 (329)
T ss_dssp TTCCHHHHHHHHGGGTTST-TEEEEEECSSSTTSEEEEEECTTSCEEEE
T ss_pred heeeHHHHHHHHHHhcCCC-CcEEEEeccCccCceEEEEECCCCceeee
Confidence 3778999999999732211 21100000 01237999999999998874
Done!