BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029428
         (193 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WLJ|A Chain A, Human Isg20
          Length = 189

 Score = 96.7 bits (239), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 45/106 (42%), Positives = 70/106 (66%)

Query: 81  DVVAMDCEMVGISQGNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRPRDLR 140
           +VVAMDCEMVG+    +S L R SLVN  G ++YD+F+RP   + D+RTR+SG+ P+ + 
Sbjct: 6   EVVAMDCEMVGLGPHRESGLARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTPQHMV 65

Query: 141 KAKDFPTVQKKVAELIEGRILVGHALHNDLKALLLTHSKKDLRDTS 186
            A  F   + ++ +L++G+++VGH L +D +AL    S   + DTS
Sbjct: 66  GATPFAVARLEILQLLKGKLVVGHDLKHDFQALKEDMSGYTIYDTS 111


>pdb|1ZBH|A Chain A, 3'-End Specific Recognition Of Histone Mrna Stem-Loop By
           3'- Exonuclease
 pdb|1ZBH|B Chain B, 3'-End Specific Recognition Of Histone Mrna Stem-Loop By
           3'- Exonuclease
 pdb|1ZBH|C Chain C, 3'-End Specific Recognition Of Histone Mrna Stem-Loop By
           3'- Exonuclease
 pdb|1ZBH|D Chain D, 3'-End Specific Recognition Of Histone Mrna Stem-Loop By
           3'- Exonuclease
          Length = 299

 Score = 29.3 bits (64), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 2/46 (4%)

Query: 114 YDEFVRPL--ERVVDFRTRISGIRPRDLRKAKDFPTVQKKVAELIE 157
           + ++VRP    ++ DF   ++GI    + +A  FP V KKV +L++
Sbjct: 120 FQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQVLKKVIDLMK 165


>pdb|1ZBU|A Chain A, Crystal Structure Of Full-Length 3'-Exonuclease
 pdb|1ZBU|B Chain B, Crystal Structure Of Full-Length 3'-Exonuclease
 pdb|1ZBU|C Chain C, Crystal Structure Of Full-Length 3'-Exonuclease
 pdb|1ZBU|D Chain D, Crystal Structure Of Full-Length 3'-Exonuclease
          Length = 349

 Score = 28.5 bits (62), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)

Query: 114 YDEFVRPL--ERVVDFRTRISGIRPRDLRKAKDFPTVQKKVAEL 155
           + ++VRP    ++ DF   ++GI    + +A  FP V KKV +L
Sbjct: 170 FQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQVLKKVIDL 213


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.313    0.132    0.376 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,709,349
Number of Sequences: 62578
Number of extensions: 218980
Number of successful extensions: 439
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 437
Number of HSP's gapped (non-prelim): 7
length of query: 193
length of database: 14,973,337
effective HSP length: 93
effective length of query: 100
effective length of database: 9,153,583
effective search space: 915358300
effective search space used: 915358300
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 49 (23.5 bits)