BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029428
(193 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q91560|REXO4_XENLA RNA exonuclease 4 OS=Xenopus laevis GN=rexo4 PE=2 SV=2
Length = 421
Score = 149 bits (376), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 66/114 (57%), Positives = 87/114 (76%), Gaps = 1/114 (0%)
Query: 79 LTDVVAMDCEMVGISQ-GNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRPR 137
LT VAMDCEMVG+ G +S L RVS+VN +G +YD++V+P ERV D+RT +SGIRP
Sbjct: 231 LTRTVAMDCEMVGVGMDGEESILARVSIVNLFGKCVYDKYVKPTERVTDYRTAVSGIRPE 290
Query: 138 DLRKAKDFPTVQKKVAELIEGRILVGHALHNDLKALLLTHSKKDLRDTSEYQPF 191
D++K + F VQK+V+E++ GR LVGHA+HNDLK L L H KK +RDT +Y+PF
Sbjct: 291 DVKKGEPFKVVQKEVSEILRGRTLVGHAVHNDLKILFLDHPKKAIRDTQKYKPF 344
>sp|Q6DEW6|REXO4_XENTR RNA exonuclease 4 OS=Xenopus tropicalis GN=rexo4 PE=2 SV=1
Length = 414
Score = 147 bits (371), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 66/114 (57%), Positives = 85/114 (74%), Gaps = 1/114 (0%)
Query: 79 LTDVVAMDCEMVGIS-QGNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRPR 137
LT VAMDCEMVG+ G +S L RVS+VN +G +YD++VRP ERV D+RT +SGIRP
Sbjct: 225 LTRTVAMDCEMVGVGLDGEESMLARVSIVNLFGKCVYDKYVRPTERVTDYRTAVSGIRPD 284
Query: 138 DLRKAKDFPTVQKKVAELIEGRILVGHALHNDLKALLLTHSKKDLRDTSEYQPF 191
D++ + F VQ +VAE++ GR LVGHA+HNDLK L L H KK +RDT +Y+PF
Sbjct: 285 DIKNGEAFKDVQAEVAEILRGRTLVGHAVHNDLKILFLDHPKKAIRDTQKYKPF 338
>sp|Q9GZR2|REXO4_HUMAN RNA exonuclease 4 OS=Homo sapiens GN=REXO4 PE=1 SV=2
Length = 422
Score = 146 bits (368), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 63/114 (55%), Positives = 89/114 (78%), Gaps = 1/114 (0%)
Query: 79 LTDVVAMDCEMVGIS-QGNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRPR 137
LT +A+DCEMVG+ +G +S RVS+VN++G +YD++V+P E V D+RT +SGIRP
Sbjct: 240 LTRALALDCEMVGVGPKGEESMAARVSIVNQYGKCVYDKYVKPTEPVTDYRTAVSGIRPE 299
Query: 138 DLRKAKDFPTVQKKVAELIEGRILVGHALHNDLKALLLTHSKKDLRDTSEYQPF 191
+L++ ++ VQK+VAE+++GRILVGHALHNDLK L L H KK +RDT +Y+PF
Sbjct: 300 NLKQGEELEVVQKEVAEMLKGRILVGHALHNDLKVLFLDHPKKKIRDTQKYKPF 353
>sp|Q6PAQ4|REXO4_MOUSE RNA exonuclease 4 OS=Mus musculus GN=Rexo4 PE=2 SV=2
Length = 432
Score = 145 bits (367), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 62/114 (54%), Positives = 90/114 (78%), Gaps = 1/114 (0%)
Query: 79 LTDVVAMDCEMVGIS-QGNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRPR 137
LT +A+DCEMVG+ +G +S RVS+VN++G +YD++V+P E V D+RT +SGIRP
Sbjct: 250 LTKALALDCEMVGVGPKGEESIAARVSIVNQYGKCVYDKYVKPTEPVTDYRTAVSGIRPE 309
Query: 138 DLRKAKDFPTVQKKVAELIEGRILVGHALHNDLKALLLTHSKKDLRDTSEYQPF 191
+L++ ++F V+K+VAE+++GRILVGHALHNDLK L L H KK +RDT +++PF
Sbjct: 310 NLKQGEEFEVVKKEVAEMLKGRILVGHALHNDLKVLFLDHPKKKIRDTQKFKPF 363
>sp|Q4PER6|REXO4_USTMA RNA exonuclease 4 OS=Ustilago maydis (strain 521 / FGSC 9021)
GN=REX4 PE=3 SV=1
Length = 375
Score = 138 bits (348), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 63/112 (56%), Positives = 87/112 (77%), Gaps = 1/112 (0%)
Query: 81 DVVAMDCEMVGIS-QGNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRPRDL 139
+ +A+DCEMVG+ +G++S L RVS+VN G IYD+FVRP E+V D+RT +SG+RP+DL
Sbjct: 134 NYLAIDCEMVGVGDKGSESILARVSIVNFHGATIYDQFVRPQEKVTDYRTWVSGVRPKDL 193
Query: 140 RKAKDFPTVQKKVAELIEGRILVGHALHNDLKALLLTHSKKDLRDTSEYQPF 191
+ A F VQ +VA LI+G++LVGHA+ NDLKALLL+H K +RDT+ +QP
Sbjct: 194 KGAPSFSQVQGEVANLIKGKVLVGHAIQNDLKALLLSHPKVLIRDTATFQPL 245
>sp|Q08237|REXO4_YEAST RNA exonuclease 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=REX4 PE=1 SV=1
Length = 289
Score = 134 bits (338), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 65/126 (51%), Positives = 93/126 (73%), Gaps = 3/126 (2%)
Query: 71 TPINDDFS--LTDVVAMDCEMVGIS-QGNKSALGRVSLVNKWGNLIYDEFVRPLERVVDF 127
T IN + S + +AMDCE VG+ +G +SAL R+S+VN +G+++ DEFV+P E+VV++
Sbjct: 108 TRINSNKSKEIGKYIAMDCEFVGVGPEGKESALARISIVNYFGHVVLDEFVKPREKVVEW 167
Query: 128 RTRISGIRPRDLRKAKDFPTVQKKVAELIEGRILVGHALHNDLKALLLTHSKKDLRDTSE 187
RT +SGI+P ++ A F QKK A+++EGRILVGHAL +DL+AL+L+H K LRDTS
Sbjct: 168 RTWVSGIKPEHMKNAITFKEAQKKTADILEGRILVGHALKHDLEALMLSHPKSLLRDTSR 227
Query: 188 YQPFLK 193
+ PF K
Sbjct: 228 HLPFRK 233
>sp|Q6BIK6|REXO4_DEBHA RNA exonuclease 4 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS
767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=REX4 PE=3 SV=2
Length = 272
Score = 134 bits (338), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 80/211 (37%), Positives = 122/211 (57%), Gaps = 41/211 (19%)
Query: 16 LNPNWAQLQLKVKSNGLNKSSKHTKNPESETHNSILGKRKERLEAESDGS---KPSPLTP 72
L+ NW +L S+ LN+ SK TK P + N +K LE + + + S L+P
Sbjct: 5 LSSNWKKL-----SSKLNQGSKVTKQP-VKGKNGKTKIKKAELENTLNITPTLQKSTLSP 58
Query: 73 IN-------DDFSLTDV------------------------VAMDCEMVGIS-QGNKSAL 100
I +D +++D+ +AMDCE VG+ +G +SAL
Sbjct: 59 IELALWTKENDINVSDIAVQTEKITLIPQGNDIRKKEPGKYLAMDCEFVGVGPEGTESAL 118
Query: 101 GRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRPRDLRKAKDFPTVQKKVAELIEGRI 160
RVS+VN +G+ ++D+FV+P ERV D+RT +SG+ P+ + +A F Q + ++L+EGRI
Sbjct: 119 ARVSIVNFYGHTVFDKFVKPRERVTDWRTWVSGVTPKHMNEAISFQEAQNETSKLLEGRI 178
Query: 161 LVGHALHNDLKALLLTHSKKDLRDTSEYQPF 191
LVGHA+H+DL AL L+H K +RDTS+Y+PF
Sbjct: 179 LVGHAIHHDLDALFLSHPKSRIRDTSQYKPF 209
>sp|Q4WHF8|REXO4_ASPFU RNA exonuclease 4 OS=Neosartorya fumigata (strain ATCC MYA-4609 /
Af293 / CBS 101355 / FGSC A1100) GN=rex4 PE=3 SV=1
Length = 310
Score = 133 bits (335), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 63/113 (55%), Positives = 83/113 (73%), Gaps = 2/113 (1%)
Query: 83 VAMDCEMVGISQG--NKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRPRDLR 140
VAMDCEMVG+ N SAL RVS+VN G +YD +VRP E + D+RT +SGI P+ +
Sbjct: 117 VAMDCEMVGVGPNPDNDSALARVSIVNFNGEQVYDSYVRPKEMITDWRTHVSGISPKHMA 176
Query: 141 KAKDFPTVQKKVAELIEGRILVGHALHNDLKALLLTHSKKDLRDTSEYQPFLK 193
+A+ VQK VAE+++GRILVGHA+ NDL ALLL H K+D+RDTS++ P+ K
Sbjct: 177 EARSLEQVQKDVAEILDGRILVGHAVSNDLDALLLGHPKRDIRDTSKHPPYRK 229
>sp|O94375|REXO4_SCHPO RNA exonuclease 4 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=rex4 PE=3 SV=1
Length = 260
Score = 127 bits (320), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 103/168 (61%), Gaps = 14/168 (8%)
Query: 26 KVKSNGLNKSSKHTKNPESETHNSILGKRKERLEAESDGSKPSPLTPINDDFSLTDVVAM 85
K + N L K +K PES+ ++ G S LT + +L +AM
Sbjct: 50 KKRMNELKKFAKENDIPESQVLDAY-------------GVDASKLTRKTNLETLGKYIAM 96
Query: 86 DCEMVGISQGNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRPRDLRKAKDF 145
DCEMVG++ + S L RVS+VN G+++YD +VRP E+V D+RT +SG++ +R A F
Sbjct: 97 DCEMVGVAD-DMSVLARVSIVNYHGHVVYDTYVRPKEKVTDWRTWVSGVKSFHMRDAPSF 155
Query: 146 PTVQKKVAELIEGRILVGHALHNDLKALLLTHSKKDLRDTSEYQPFLK 193
VQ +VA++++ R+LVGHA+HNDLK LLL+H ++ +RDTS + + K
Sbjct: 156 EKVQAEVAKILDNRVLVGHAVHNDLKVLLLSHPRRMIRDTSRFSGYRK 203
>sp|Q6CMT3|REXO4_KLULA RNA exonuclease 4 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS
2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=REX4 PE=3 SV=1
Length = 294
Score = 122 bits (305), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 56/110 (50%), Positives = 80/110 (72%), Gaps = 1/110 (0%)
Query: 83 VAMDCEMVGIS-QGNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRPRDLRK 141
V+MDCE VG+ G SAL RVS+VN +GN++ D FVRP E V D+RT +SGI+P +
Sbjct: 120 VSMDCEFVGVGPDGKDSALARVSIVNYYGNVVLDLFVRPKEPVTDWRTWVSGIKPHHMAN 179
Query: 142 AKDFPTVQKKVAELIEGRILVGHALHNDLKALLLTHSKKDLRDTSEYQPF 191
A QK+V+ +++GRILVGH++H+DL AL+L+H ++ +RDTS + PF
Sbjct: 180 AVTQEDCQKQVSNVLKGRILVGHSVHHDLTALMLSHPRRMIRDTSRHMPF 229
>sp|Q4IEV5|REXO4_GIBZE RNA exonuclease 4 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 /
FGSC 9075 / NRRL 31084) GN=REX4 PE=3 SV=1
Length = 319
Score = 121 bits (303), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 56/122 (45%), Positives = 87/122 (71%), Gaps = 1/122 (0%)
Query: 73 INDDFSLTDVVAMDCEMVGIS-QGNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRI 131
+ + + +A+DCEMVG+ G++SAL RVS+V+ G IYD +V+P E+V ++RT +
Sbjct: 124 LTEGIEIGKYIAIDCEMVGVGPGGHESALARVSIVDFHGVQIYDSYVKPKEKVTNWRTAV 183
Query: 132 SGIRPRDLRKAKDFPTVQKKVAELIEGRILVGHALHNDLKALLLTHSKKDLRDTSEYQPF 191
SGI + +R A+DF VQ ++ +L+ GRILVGH L +DL+AL+L+H KD+RDT+++ F
Sbjct: 184 SGISQKSMRFARDFEEVQAEIDKLLRGRILVGHDLKHDLEALILSHPGKDIRDTAKFSGF 243
Query: 192 LK 193
K
Sbjct: 244 KK 245
>sp|Q6CE69|REXO4_YARLI RNA exonuclease 4 OS=Yarrowia lipolytica (strain CLIB 122 / E 150)
GN=REX4 PE=3 SV=1
Length = 291
Score = 118 bits (295), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 62/157 (39%), Positives = 92/157 (58%), Gaps = 4/157 (2%)
Query: 38 HTKNPESETHNSILGKRKERLEAESDGSKPSPLTPINDDFSLT--DVVAMDCEMVGIS-Q 94
H +P T +IL LE E+ + P P+ P+ + +A+DCE VG+
Sbjct: 88 HKNDPTRPTLGAILQSDDAGLE-EALHAPPQPIEPVLARWKCAPGKFIALDCEFVGVGPN 146
Query: 95 GNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRPRDLRKAKDFPTVQKKVAE 154
G +S L RVS+VN +G+++ DE+V+P+ERV D+RT +SG+ P + F Q++V
Sbjct: 147 GARSILARVSIVNYYGHVLMDEYVKPIERVTDWRTWVSGVTPAMVANGISFSEAQERVKR 206
Query: 155 LIEGRILVGHALHNDLKALLLTHSKKDLRDTSEYQPF 191
L+ GR L+GHAL NDL L L H + D+RDT + Q F
Sbjct: 207 LLNGRTLIGHALINDLAVLGLDHPRADIRDTQKPQYF 243
>sp|Q5A3Q0|REXO4_CANAL RNA exonuclease 4 OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=REX4 PE=3 SV=1
Length = 285
Score = 117 bits (292), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 62/129 (48%), Positives = 85/129 (65%), Gaps = 4/129 (3%)
Query: 66 KPSPLTPINDDFSLT--DVVAMDCEMVGISQ-GNKSALGRVSLVNKWGNLIYDEFVRPLE 122
KP PL+ ND L VA+DCE VGI + G +SAL R+S++N +G ++ D +VRP E
Sbjct: 99 KPLPLSR-NDSRKLDPGKYVAIDCEFVGIGKDGEESALARISIINYYGVVLLDTYVRPQE 157
Query: 123 RVVDFRTRISGIRPRDLRKAKDFPTVQKKVAELIEGRILVGHALHNDLKALLLTHSKKDL 182
RV D+RT +SGI+ ++ A DF T Q K ELI +ILVGHA++NDL L L+H K +
Sbjct: 158 RVTDWRTWVSGIQSYHMQDAIDFKTAQLKTMELINNKILVGHAVNNDLDILFLSHPKSMI 217
Query: 183 RDTSEYQPF 191
RDT ++ F
Sbjct: 218 RDTCKFPKF 226
>sp|Q757I9|REXO4_ASHGO RNA exonuclease 4 OS=Ashbya gossypii (strain ATCC 10895 / CBS
109.51 / FGSC 9923 / NRRL Y-1056) GN=REX4 PE=3 SV=1
Length = 285
Score = 116 bits (291), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 52/115 (45%), Positives = 79/115 (68%), Gaps = 1/115 (0%)
Query: 78 SLTDVVAMDCEMVGIS-QGNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRP 136
S+ VAMDCE VG+ G +S L RVS+VN +G + D +VRP E+V D+RT +SGI P
Sbjct: 109 SVGKFVAMDCEFVGVGPDGKESVLARVSVVNYYGQEVLDLYVRPKEKVTDWRTWVSGITP 168
Query: 137 RDLRKAKDFPTVQKKVAELIEGRILVGHALHNDLKALLLTHSKKDLRDTSEYQPF 191
+++A Q++VA +++ R+L+GH LH+DL+ L+++H K +RDTS + PF
Sbjct: 169 AHMKQAVTLEEAQRRVAAMLKNRVLIGHGLHHDLEMLMVSHPKAQIRDTSMHGPF 223
>sp|Q6FQA0|REXO4_CANGA RNA exonuclease 4 OS=Candida glabrata (strain ATCC 2001 / CBS 138 /
JCM 3761 / NBRC 0622 / NRRL Y-65) GN=REX4 PE=3 SV=1
Length = 263
Score = 112 bits (279), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 52/110 (47%), Positives = 79/110 (71%), Gaps = 1/110 (0%)
Query: 83 VAMDCEMVGIS-QGNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRPRDLRK 141
+AMDCE VG+ +G SAL RVSLVN GN++ D FV+P E V D+RT +SGI P ++
Sbjct: 96 IAMDCEFVGVGPEGKDSALARVSLVNFHGNVVLDIFVKPRETVTDWRTWVSGITPDHMKN 155
Query: 142 AKDFPTVQKKVAELIEGRILVGHALHNDLKALLLTHSKKDLRDTSEYQPF 191
A F Q++++++++ +ILVGHA+ +DL+AL+L+H K + DT+ + PF
Sbjct: 156 AVSFKQAQQQLSDILKDKILVGHAVKHDLEALMLSHPKSKVIDTARHLPF 205
>sp|P0CQ44|REXO4_CRYNJ RNA exonuclease 4 OS=Cryptococcus neoformans var. neoformans
serotype D (strain JEC21 / ATCC MYA-565) GN=REX4 PE=3
SV=1
Length = 408
Score = 110 bits (276), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 55/110 (50%), Positives = 74/110 (67%), Gaps = 1/110 (0%)
Query: 83 VAMDCEMVGIS-QGNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRPRDLRK 141
+A+DCEMVG+ G ++ L RVS+VN G +I D FV+P E V D+RT ISG++ DL
Sbjct: 133 LAIDCEMVGVGPNGMENTLARVSIVNYHGAVILDTFVQPREPVTDYRTWISGVKQSDLLG 192
Query: 142 AKDFPTVQKKVAELIEGRILVGHALHNDLKALLLTHSKKDLRDTSEYQPF 191
A F V K+VA L+ +IL+GHA+ NDLK L+LTH RDT +Y+P
Sbjct: 193 APQFDEVNKQVANLLHDKILIGHAIDNDLKVLMLTHPGPLTRDTQKYKPL 242
>sp|P0CQ45|REXO4_CRYNB RNA exonuclease 4 OS=Cryptococcus neoformans var. neoformans
serotype D (strain B-3501A) GN=REX4 PE=3 SV=1
Length = 408
Score = 110 bits (276), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 55/110 (50%), Positives = 74/110 (67%), Gaps = 1/110 (0%)
Query: 83 VAMDCEMVGIS-QGNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRPRDLRK 141
+A+DCEMVG+ G ++ L RVS+VN G +I D FV+P E V D+RT ISG++ DL
Sbjct: 133 LAIDCEMVGVGPNGMENTLARVSIVNYHGAVILDTFVQPREPVTDYRTWISGVKQSDLLG 192
Query: 142 AKDFPTVQKKVAELIEGRILVGHALHNDLKALLLTHSKKDLRDTSEYQPF 191
A F V K+VA L+ +IL+GHA+ NDLK L+LTH RDT +Y+P
Sbjct: 193 APQFDEVNKQVANLLHDKILIGHAIDNDLKVLMLTHPGPLTRDTQKYKPL 242
>sp|Q7S9B7|REXO4_NEUCR RNA exonuclease 4 OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rex-4
PE=3 SV=1
Length = 406
Score = 110 bits (274), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 53/117 (45%), Positives = 75/117 (64%), Gaps = 1/117 (0%)
Query: 78 SLTDVVAMDCEMVGIS-QGNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRP 136
+L +++DCEMVG G S L R S+V+ G+ IYD +VRP V D+RT +SGI
Sbjct: 212 TLGKYLSIDCEMVGTGPSGATSVLARCSIVDFHGHQIYDSYVRPTAFVTDWRTHVSGISK 271
Query: 137 RDLRKAKDFPTVQKKVAELIEGRILVGHALHNDLKALLLTHSKKDLRDTSEYQPFLK 193
R + A+ F +VQ VA L++GRILVGH + +DL+ L H +D+RDT++Y F K
Sbjct: 272 RHMASARSFESVQATVAALLKGRILVGHDVKHDLEVLGFEHPHRDIRDTAKYSGFRK 328
>sp|Q8WTP8|AEN_HUMAN Apoptosis-enhancing nuclease OS=Homo sapiens GN=AEN PE=1 SV=2
Length = 325
Score = 110 bits (274), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 60/142 (42%), Positives = 86/142 (60%), Gaps = 5/142 (3%)
Query: 55 KERLEAESDGSKPSPLTPINDDFS---LTDVVAMDCEMVGIS-QGNKSALGRVSLVNKWG 110
K+ L A S GS P P S + VA+DCEMVG +G S L R S+V+ G
Sbjct: 81 KQCLRAGS-GSAPCSRRPAPGKASGPLPSKCVAIDCEMVGTGPRGRVSELARCSIVSYHG 139
Query: 111 NLIYDEFVRPLERVVDFRTRISGIRPRDLRKAKDFPTVQKKVAELIEGRILVGHALHNDL 170
N++YD+++RP + D+RTR SGI + +RKA F QK++ +L++G+++VGHALHND
Sbjct: 140 NVLYDKYIRPEMPIADYRTRWSGITRQHMRKAVPFQVAQKEILKLLKGKVVVGHALHNDF 199
Query: 171 KALLLTHSKKDLRDTSEYQPFL 192
+AL H + RDT+ FL
Sbjct: 200 QALKYVHPRSQTRDTTYVPNFL 221
>sp|B2GUW6|AEN_RAT Apoptosis-enhancing nuclease OS=Rattus norvegicus GN=Aen PE=2 SV=1
Length = 332
Score = 109 bits (273), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/148 (43%), Positives = 91/148 (61%), Gaps = 11/148 (7%)
Query: 52 GKRKERLEAESDGSK------PSPLTPINDDFSLTDVVAMDCEMVGIS-QGNKSALGRVS 104
G RK+R +A S GSK P P + S VA+DCEMVG QG S L R S
Sbjct: 72 GNRKQRTKARS-GSKGLCSKRPVPREAPSSGPS--KYVAIDCEMVGTGPQGRVSELARCS 128
Query: 105 LVNKWGNLIYDEFVRPLERVVDFRTRISGIRPRDLRKAKDFPTVQKKVAELIEGRILVGH 164
+V+ G+++YD+++RP +VD+RTR SGI + + KA F QK++ +L++G+++VGH
Sbjct: 129 VVSYSGDVLYDKYIRPEMPIVDYRTRWSGITRQHMHKAIPFQVAQKEILKLLKGKVVVGH 188
Query: 165 ALHNDLKALLLTHSKKDLRDTSEYQPFL 192
ALHND +AL H +RDT+ Y P L
Sbjct: 189 ALHNDFQALKYVHPGSQIRDTT-YVPNL 215
>sp|Q6AXU3|I20L2_RAT Interferon-stimulated 20 kDa exonuclease-like 2 OS=Rattus
norvegicus GN=Isg20l2 PE=2 SV=1
Length = 369
Score = 108 bits (270), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 50/107 (46%), Positives = 74/107 (69%), Gaps = 1/107 (0%)
Query: 82 VVAMDCEMVGIS-QGNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRPRDLR 140
+VA+DCEMVG +G S+L R S+VN G+++YDE++RP +VD+RTR SGIR +
Sbjct: 195 MVAIDCEMVGTGPKGRVSSLARCSIVNYNGDVLYDEYIRPPCYIVDYRTRWSGIRKCHMV 254
Query: 141 KAKDFPTVQKKVAELIEGRILVGHALHNDLKALLLTHSKKDLRDTSE 187
A F T + ++ +++ G+++VGHA+HND KAL H K RDTS+
Sbjct: 255 NATPFKTARSQILKILSGKVVVGHAIHNDYKALQYFHPKSLTRDTSQ 301
>sp|Q9CZI9|AEN_MOUSE Apoptosis-enhancing nuclease OS=Mus musculus GN=Aen PE=2 SV=1
Length = 336
Score = 108 bits (269), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 76/112 (67%), Gaps = 2/112 (1%)
Query: 82 VVAMDCEMVGIS-QGNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRPRDLR 140
VA+DCEMVG QG S L R S+V+ G+++YD+++RP +VD+RTR SGI + +
Sbjct: 109 CVAIDCEMVGTGPQGRVSELARCSVVSYSGDVLYDKYIRPEMPIVDYRTRWSGITRQHMH 168
Query: 141 KAKDFPTVQKKVAELIEGRILVGHALHNDLKALLLTHSKKDLRDTSEYQPFL 192
KA F QK++ +L++G+++VGHALHND +AL H + RDT+ Y P L
Sbjct: 169 KAIPFQVAQKEILKLLKGKVVVGHALHNDFQALKYVHPRSQTRDTT-YVPNL 219
>sp|Q9H9L3|I20L2_HUMAN Interferon-stimulated 20 kDa exonuclease-like 2 OS=Homo sapiens
GN=ISG20L2 PE=1 SV=1
Length = 353
Score = 107 bits (267), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 50/111 (45%), Positives = 74/111 (66%), Gaps = 1/111 (0%)
Query: 82 VVAMDCEMVGIS-QGNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRPRDLR 140
+VA+DCEMVG +G+ S+L R S+VN G+++YDE++ P +VD+RTR SGIR + +
Sbjct: 179 MVAIDCEMVGTGPKGHVSSLARCSIVNYNGDVLYDEYILPPCHIVDYRTRWSGIRKQHMV 238
Query: 141 KAKDFPTVQKKVAELIEGRILVGHALHNDLKALLLTHSKKDLRDTSEYQPF 191
A F + ++ +++ G+I+VGHA+HND KAL H K RDTS P
Sbjct: 239 NATPFKIARGQILKILTGKIVVGHAIHNDFKALQYFHPKSLTRDTSHIPPL 289
>sp|Q5REE2|AEN_PONAB Apoptosis-enhancing nuclease OS=Pongo abelii GN=AEN PE=2 SV=1
Length = 325
Score = 106 bits (264), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/114 (43%), Positives = 76/114 (66%), Gaps = 1/114 (0%)
Query: 80 TDVVAMDCEMVGIS-QGNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRPRD 138
+ VA+DCEMVG +G S L R S+V+ G+++YD+++RP +VD+RTR SGI +
Sbjct: 108 SKCVAIDCEMVGTGPRGRVSELARCSIVSYHGDVLYDKYIRPEMPIVDYRTRWSGITRQH 167
Query: 139 LRKAKDFPTVQKKVAELIEGRILVGHALHNDLKALLLTHSKKDLRDTSEYQPFL 192
+ KA F QK++ +L++G+++VGHALHND +AL H + RDT+ FL
Sbjct: 168 MCKAIPFQVAQKEILKLLKGKVVVGHALHNDFQALKYVHPRSQTRDTTYVPNFL 221
>sp|Q2YDK1|I20L2_BOVIN Interferon-stimulated 20 kDa exonuclease-like 2 OS=Bos taurus
GN=ISG20L2 PE=2 SV=1
Length = 349
Score = 105 bits (263), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/106 (46%), Positives = 73/106 (68%), Gaps = 1/106 (0%)
Query: 82 VVAMDCEMVGIS-QGNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRPRDLR 140
+VA+DCEMVG +G+ S+L R S+VN G+++YDE++ P +VD+RTR SGIR + +
Sbjct: 175 MVAIDCEMVGTGPKGHVSSLARCSIVNYDGDVLYDEYILPPCHIVDYRTRWSGIRKQHMV 234
Query: 141 KAKDFPTVQKKVAELIEGRILVGHALHNDLKALLLTHSKKDLRDTS 186
A F + ++ +++ G+I+VGHA+HND KAL H K RDTS
Sbjct: 235 NATPFKIARNQILKILAGKIVVGHAIHNDFKALQYIHPKSLTRDTS 280
>sp|Q3U1G5|I20L2_MOUSE Interferon-stimulated 20 kDa exonuclease-like 2 OS=Mus musculus
GN=Isg20l2 PE=2 SV=2
Length = 368
Score = 102 bits (255), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 48/106 (45%), Positives = 72/106 (67%), Gaps = 1/106 (0%)
Query: 82 VVAMDCEMVGIS-QGNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRPRDLR 140
+VA+DCEMVG +G S+L R S+VN G+++YDE+V P +V++RTR SGIR +
Sbjct: 194 MVAIDCEMVGTGPKGRVSSLARCSIVNYNGDVLYDEYVLPPCYIVNYRTRWSGIRKCHMV 253
Query: 141 KAKDFPTVQKKVAELIEGRILVGHALHNDLKALLLTHSKKDLRDTS 186
A F T + ++ +++ G++++GHA+HND KAL H K RDTS
Sbjct: 254 NATPFKTARSQILKILSGKVVIGHAIHNDYKALQYFHPKSLTRDTS 299
>sp|Q96AZ6|ISG20_HUMAN Interferon-stimulated gene 20 kDa protein OS=Homo sapiens GN=ISG20
PE=1 SV=2
Length = 181
Score = 96.7 bits (239), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 70/106 (66%)
Query: 81 DVVAMDCEMVGISQGNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRPRDLR 140
+VVAMDCEMVG+ +S L R SLVN G ++YD+F+RP + D+RTR+SG+ P+ +
Sbjct: 6 EVVAMDCEMVGLGPHRESGLARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTPQHMV 65
Query: 141 KAKDFPTVQKKVAELIEGRILVGHALHNDLKALLLTHSKKDLRDTS 186
A F + ++ +L++G+++VGH L +D +AL S + DTS
Sbjct: 66 GATPFAVARLEILQLLKGKLVVGHDLKHDFQALKEDMSGYTIYDTS 111
>sp|Q66UW5|ISG20_PIG Interferon-stimulated gene 20 kDa protein OS=Sus scrofa GN=Isg20
PE=1 SV=2
Length = 181
Score = 94.4 bits (233), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 71/106 (66%)
Query: 81 DVVAMDCEMVGISQGNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRPRDLR 140
+VVAMDCEMVG+ +S L R SLVN G ++YD+F++P + D+RTR+SG+ P+ +
Sbjct: 6 EVVAMDCEMVGMGPRRESGLARCSLVNVHGAVLYDKFIQPEGEITDYRTRVSGVTPQHMV 65
Query: 141 KAKDFPTVQKKVAELIEGRILVGHALHNDLKALLLTHSKKDLRDTS 186
A F + ++ +L++G+++VGH L +D +AL ++ + DTS
Sbjct: 66 GATPFAVARLEILQLLKGKLVVGHDLKHDFQALKEDMNRYTIYDTS 111
>sp|Q9JL16|ISG20_MOUSE Interferon-stimulated gene 20 kDa protein OS=Mus musculus GN=Isg20
PE=1 SV=1
Length = 300
Score = 94.4 bits (233), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 71/109 (65%)
Query: 78 SLTDVVAMDCEMVGISQGNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRPR 137
+ +VVAMDCEMVG+ S L R S+VN G ++YD+++RP + D+RT++SG+ P+
Sbjct: 3 GIPEVVAMDCEMVGLGPQRVSGLARCSIVNIHGAVLYDKYIRPEGEITDYRTQVSGVTPQ 62
Query: 138 DLRKAKDFPTVQKKVAELIEGRILVGHALHNDLKALLLTHSKKDLRDTS 186
+ +A F + ++ +L++G+++VGH L +D AL SK + DTS
Sbjct: 63 HMVRATPFGEARLEILQLLKGKLVVGHDLKHDFNALKEDMSKYTIYDTS 111
>sp|Q54U94|REXO4_DICDI RNA exonuclease 4 OS=Dictyostelium discoideum GN=rexo4 PE=3 SV=1
Length = 298
Score = 85.9 bits (211), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/110 (42%), Positives = 78/110 (70%), Gaps = 2/110 (1%)
Query: 84 AMDCEMVGISQGNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGI-RPRDLRKA 142
++DC+++ I +GNK LG+V + N+ G +IY++ V+P++++VDFRT+ +G+ R + R+
Sbjct: 127 SIDCKIIEI-EGNKGTLGKVCIANQNGQIIYEKIVKPMDKIVDFRTKFTGLTRDKVQREG 185
Query: 143 KDFPTVQKKVAELIEGRILVGHALHNDLKALLLTHSKKDLRDTSEYQPFL 192
DF VQK+V +++ +ILVGH L +DLK L L H KK LRD +++ F
Sbjct: 186 TDFLQVQKEVEKILRHKILVGHDLVHDLKNLKLAHKKKLLRDATQFTKFF 235
>sp|Q8RXK2|SDN3_ARATH Small RNA degrading nuclease 3 OS=Arabidopsis thaliana GN=SDN3 PE=1
SV=1
Length = 782
Score = 77.8 bits (190), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 72/115 (62%), Gaps = 5/115 (4%)
Query: 80 TDVVAMDCEMVGISQGNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRPRDL 139
T ++++DCEMV G++ AL RV V++ ++ D+FV+P + V+D++T I+G+ DL
Sbjct: 143 TRMLSIDCEMVTCEDGSQ-ALVRVGAVDRDLKVVLDKFVKPDKPVIDYKTDITGVTAEDL 201
Query: 140 RKAK-DFPTVQKKVAELIE-GRILVGHALHNDLKALLLTHSKKDLRDTSEYQPFL 192
+A +QKK+ + G ILVGH LHNDL+ L + H++ + DTS F+
Sbjct: 202 ERATLSVADIQKKLRRFLSVGTILVGHGLHNDLQVLRIDHAR--VIDTSYVFEFV 254
>sp|Q9FFG1|SDN2_ARATH Small RNA degrading nuclease 2 OS=Arabidopsis thaliana GN=SDN2 PE=2
SV=1
Length = 466
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 68/101 (67%), Gaps = 3/101 (2%)
Query: 81 DVVAMDCEMVGISQGNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRPRDLR 140
+++A+DCEMV G++ A+ RV+ V++ +I DEFV+P + VVD+RT I+G+ +DL
Sbjct: 141 EMIAIDCEMVLCEDGSE-AVVRVAAVDRDLKVILDEFVKPNQPVVDYRTFITGLTAQDLE 199
Query: 141 KAK-DFPTVQKKVAELI-EGRILVGHALHNDLKALLLTHSK 179
KA +Q+K+ I E ILVG +L++DLK L + H++
Sbjct: 200 KATISVVDIQEKLLMFISEDTILVGQSLNHDLKVLKVDHAR 240
>sp|A3KPE8|SDN1_ARATH Small RNA degrading nuclease 1 OS=Arabidopsis thaliana GN=SDN1 PE=2
SV=1
Length = 409
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 63/102 (61%), Gaps = 3/102 (2%)
Query: 80 TDVVAMDCEMVGISQGNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRPRDL 139
T++VA+DCEMV G + L RV +V++ +I DEFV+P + VVD+RT I+GI D+
Sbjct: 138 TNMVAVDCEMVLCEDGTE-GLVRVGVVDRDLKVILDEFVKPNKPVVDYRTDITGITAEDI 196
Query: 140 RKAK-DFPTVQKKVAELIE-GRILVGHALHNDLKALLLTHSK 179
A +Q+ + + G ILVGH+L+ DL+ L + H K
Sbjct: 197 ENASLSVVDIQETLQPFLSTGTILVGHSLNRDLEVLKIDHPK 238
>sp|Q6FIU7|REXO3_CANGA RNA exonuclease 3 OS=Candida glabrata (strain ATCC 2001 / CBS 138 /
JCM 3761 / NBRC 0622 / NRRL Y-65) GN=REX3 PE=3 SV=1
Length = 398
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 65/103 (63%), Gaps = 6/103 (5%)
Query: 81 DVVAMDCEMVGISQGNKSALGRVSLVNKWGN-LIYDEFVRPLERVVDFRTRISGIRPRDL 139
+V+A+DCEM + G + + R+++V+ + + +YDE +RP+ V+D T+ SG+R D+
Sbjct: 238 NVLALDCEMGFTTMGYE--MVRLTIVDFFTSKTLYDEIIRPIGEVIDLNTQFSGVREEDI 295
Query: 140 RKAKDFPTVQKKV--AELI-EGRILVGHALHNDLKALLLTHSK 179
AKD+ V + V A++I IL+GH L NDL + L H++
Sbjct: 296 LYAKDYEDVMEDVLRADMINRNSILIGHGLENDLNVMRLFHTR 338
>sp|Q750A5|REXO3_ASHGO RNA exonuclease 3 OS=Ashbya gossypii (strain ATCC 10895 / CBS
109.51 / FGSC 9923 / NRRL Y-1056) GN=REX3 PE=3 SV=1
Length = 382
Score = 71.2 bits (173), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 65/115 (56%), Gaps = 8/115 (6%)
Query: 80 TDVVAMDCEMVGISQGNKSALGRVSLVNKWGN-LIYDEFVRPLERVVDFRTRISGIRPRD 138
T+V+A+DCEM S G + L R+++V W N +++DE V+PL ++D T+ SG+ D
Sbjct: 221 TNVLALDCEMAYTSCGYE--LIRLTVVEFWTNAVLFDEIVQPLGEIIDLNTQFSGVHEID 278
Query: 139 LRKAKDFPTVQKKV---AELIEGRILVGHALHNDLKALLLTHSKKDLRDTSEYQP 190
AK F ++ A + E IL+GH L NDL L + H K + DT+ P
Sbjct: 279 RAVAKTFEEAREVFLSPAMINENSILIGHGLENDLNVLRIIHDK--IIDTAILYP 331
>sp|P53331|REXO1_YEAST RNA exonuclease 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=RNH70 PE=1 SV=1
Length = 553
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 56/99 (56%), Gaps = 5/99 (5%)
Query: 82 VVAMDCEMVGISQGNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRPRDLRK 141
+ A+DCEM QG L R+SLVN +IY+E V+P +VD+ TR SGI L
Sbjct: 225 IFALDCEMCLSEQG--LVLTRISLVNFDNEVIYEELVKPDVPIVDYLTRYSGITEEKLTV 282
Query: 142 A--KDFPTVQKKVAELIE-GRILVGHALHNDLKALLLTH 177
K VQK + ++I IL+GH+L NDLK + L H
Sbjct: 283 GAKKTLREVQKDLLKIISRSDILIGHSLQNDLKVMKLKH 321
>sp|Q10124|PQE1_CAEEL Putative RNA exonuclease pqe-1 OS=Caenorhabditis elegans GN=pqe-1
PE=2 SV=2
Length = 1647
Score = 67.8 bits (164), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 66/117 (56%), Gaps = 6/117 (5%)
Query: 72 PINDDFSLTDVVAMDCEMVGISQGNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRI 131
P+ +D T V A+DCEMV G AL R+++V+ N + D FV+P V+D T
Sbjct: 1468 PVPNDQRSTRVYALDCEMVYTIAG--PALARLTMVDMQRNRVLDVFVKPPTDVLDPNTEF 1525
Query: 132 SGIRPRDLRKAKD-FPTVQKKVAELIEG-RILVGHALHNDLKALLLTHSKKDLRDTS 186
SG+ + A D T +K+ + + IL+GH+L +DLKA+ + H K++ DT+
Sbjct: 1526 SGLTMEQINSAPDTLKTCHQKLFKYVNADTILIGHSLESDLKAMRVVH--KNVIDTA 1580
>sp|A0PJM3|GORL_HUMAN Putative exonuclease GOR-like protein OS=Homo sapiens GN=REXO1L2P
PE=5 SV=2
Length = 583
Score = 65.5 bits (158), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/99 (38%), Positives = 57/99 (57%), Gaps = 4/99 (4%)
Query: 82 VVAMDCEMVGISQGNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRPRDLRK 141
+ A+DCEM + G + L RV++V+ ++YD FV+P +VD+ TR SG+ D+ K
Sbjct: 409 IYALDCEMCYTTHGLE--LTRVTVVDADMRVVYDTFVKPDNEIVDYNTRFSGVTEADVAK 466
Query: 142 AK-DFPTVQKKVAELIEGR-ILVGHALHNDLKALLLTHS 178
P VQ + + IL+GH+L +DL AL L HS
Sbjct: 467 TSITLPQVQAILLSFFSAQTILIGHSLESDLLALKLIHS 505
>sp|O94443|YFE9_SCHPO Uncharacterized exonuclease C637.09 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC637.09 PE=3 SV=2
Length = 631
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 57/98 (58%), Gaps = 4/98 (4%)
Query: 82 VVAMDCEMVGISQGNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRPRDLRK 141
++A+DCEMV G + + RV++V+ +IYDEFV+P V D+ T+ SGI LR
Sbjct: 276 ILAIDCEMVRTENGLE--IARVTIVDMKSEVIYDEFVKPESPVTDYVTQYSGITEEKLRN 333
Query: 142 AKD-FPTVQKKVAELIEGR-ILVGHALHNDLKALLLTH 177
VQ + + ++ +L+GH+L++DL L TH
Sbjct: 334 VTTVLSDVQSYLKKTVDNNTVLLGHSLNSDLNCLKFTH 371
>sp|Q8IX06|GOR_HUMAN Exonuclease GOR OS=Homo sapiens GN=REXO1L1 PE=2 SV=2
Length = 675
Score = 65.1 bits (157), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/99 (38%), Positives = 57/99 (57%), Gaps = 4/99 (4%)
Query: 82 VVAMDCEMVGISQGNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRPRDLRK 141
+ A+DCEM + G + L RV++V+ ++YD FV+P +VD+ TR SG+ D+ K
Sbjct: 501 IYALDCEMCYTTHGLE--LTRVTVVDADMRVVYDTFVKPDNEIVDYNTRFSGVTEADVAK 558
Query: 142 AK-DFPTVQKKVAELIEGR-ILVGHALHNDLKALLLTHS 178
P VQ + + IL+GH+L +DL AL L HS
Sbjct: 559 TSITLPQVQAILLSFFSAQTILIGHSLESDLLALKLIHS 597
>sp|P48778|GOR_PANTR Exonuclease GOR OS=Pan troglodytes GN=REXO1L1 PE=2 SV=3
Length = 690
Score = 64.7 bits (156), Expect = 4e-10, Method: Composition-based stats.
Identities = 38/99 (38%), Positives = 57/99 (57%), Gaps = 4/99 (4%)
Query: 82 VVAMDCEMVGISQGNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRPRDLRK 141
+ A+DCEM + G + L RV++V+ ++YD FV+P +VD+ TR SG+ D+ K
Sbjct: 407 IYALDCEMCYTTHGLE--LTRVTVVDADMRVVYDTFVKPDNEIVDYNTRFSGVTEADVAK 464
Query: 142 AK-DFPTVQKKVAELIEGR-ILVGHALHNDLKALLLTHS 178
P VQ + + IL+GH+L +DL AL L HS
Sbjct: 465 TSITLPQVQAILLSFFSAQTILIGHSLESDLLALKLIHS 503
>sp|Q6CFE7|REXO3_YARLI RNA exonuclease 3 OS=Yarrowia lipolytica (strain CLIB 122 / E 150)
GN=REX3 PE=3 SV=1
Length = 757
Score = 63.5 bits (153), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 64/123 (52%), Gaps = 18/123 (14%)
Query: 80 TDVVAMDCEMVGISQGNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRPRDL 139
T VVA+DCEM+ S G + L RV+ ++ G D VRP R++D+ TR SGI D+
Sbjct: 595 TSVVAVDCEMLYTSLGME--LCRVTCIDYHGKKTLDRVVRPTGRILDYNTRFSGI--SDI 650
Query: 140 RK-----------AKDFPTVQKKVAELIEGR-ILVGHALHNDLKALLLTHSKKDLRDTSE 187
+ + F + + +LI + ILVGH L NDL A+ L H + + DTS
Sbjct: 651 NEPIITESGEKGDSISFEEAHRLILKLINKQTILVGHGLENDLIAMRLIHDR--IIDTSI 708
Query: 188 YQP 190
P
Sbjct: 709 LYP 711
>sp|Q2T9U5|REXON_BOVIN Putative RNA exonuclease NEF-sp OS=Bos taurus PE=2 SV=1
Length = 783
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 65/116 (56%), Gaps = 13/116 (11%)
Query: 70 LTPINDDFSLTD---VVAMDCEMVGISQGNKSALGRVSLVNKWGNLIYDEFVRPLERVVD 126
P + S+TD + +DCEM S+G + L R+SLV + G + DE V+P ++VD
Sbjct: 215 FVPTKCNGSVTDNSPLFGLDCEMCLTSKGRE--LTRISLVAEGGGCVMDELVKPDNKIVD 272
Query: 127 FRTRISGIRPRDLR----KAKDFPTVQKKVAELI-EGRILVGHALHNDLKALLLTH 177
+ T SGI + L K KD VQ+++ L+ +LVGH+L DL+AL + H
Sbjct: 273 YLTSFSGITKKILNPVTTKLKD---VQRRLKILLPPDAVLVGHSLDLDLRALKMIH 325
>sp|Q6CJB5|REXO3_KLULA RNA exonuclease 3 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS
2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=REX3 PE=3 SV=1
Length = 478
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 65/117 (55%), Gaps = 15/117 (12%)
Query: 81 DVVAMDCEMVGISQGNKSALGRVSLVNKWGN-LIYDEFVRPLERVVDFRTRISGIRPRDL 139
+V+A+DCEM S+G + + R+++V+ W + ++YD+ ++PL ++D ++ SGI D
Sbjct: 319 NVLALDCEMAFTSKGYE--MIRITIVDFWSSEVVYDKVIKPLGEIIDLNSKFSGIHHID- 375
Query: 140 RKAKDFPTVQKKVAELI------EGRILVGHALHNDLKALLLTHSKKDLRDTSEYQP 190
PT+ + I + IL+GH L NDL+ + + H K + DT+ P
Sbjct: 376 ---DTAPTIHEAEKCYICPSMINQNSILIGHGLDNDLRVMRIVHDK--VIDTAVLYP 427
>sp|Q8L7M4|SDN5_ARATH Small RNA degrading nuclease 5 OS=Arabidopsis thaliana GN=SDN5 PE=2
SV=2
Length = 567
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 66/128 (51%), Gaps = 11/128 (8%)
Query: 52 GKRKERLEAESDGSKPSPLTPINDDFSLTDVVAMDCEMVGISQGNKSALGRVSLVNKWGN 111
G E+LE PS P ++VA+DCEM +G + L RV+LV+ G
Sbjct: 192 GYTFEKLELTPTLPAPSGSCP-------PEIVALDCEMCITKEGLE--LTRVTLVDIQGQ 242
Query: 112 LIYDEFVRPLERVVDFRTRISGIRPRDLRKAKD-FPTVQKKVAELI-EGRILVGHALHND 169
++ D+ V P + D+ TR SGI + +Q++ +L+ + ILVGH+L ND
Sbjct: 243 VLLDKLVMPTNPITDYNTRYSGITAVMMEGVTTTLKDIQEEFLKLVFKETILVGHSLEND 302
Query: 170 LKALLLTH 177
L +L ++H
Sbjct: 303 LLSLKISH 310
>sp|Q96IC2|REXON_HUMAN Putative RNA exonuclease NEF-sp OS=Homo sapiens GN=44M2.3 PE=2 SV=1
Length = 774
Score = 60.5 bits (145), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 59/101 (58%), Gaps = 10/101 (9%)
Query: 82 VVAMDCEMVGISQGNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRPRDLR- 140
+ +DCEM S+G + L R+SLV + G + DE V+P +++D+ T SGI + L
Sbjct: 228 LFGLDCEMCLTSKGRE--LTRISLVAEGGCCVMDELVKPENKILDYLTSFSGITKKILNP 285
Query: 141 ---KAKDFPTVQKKVAELI-EGRILVGHALHNDLKALLLTH 177
K KD VQ+++ L+ +LVGH+L DL+AL + H
Sbjct: 286 VTTKLKD---VQRQLKALLPPDAVLVGHSLDLDLRALKMIH 323
>sp|Q4R9F7|REXON_MACFA Putative RNA exonuclease NEF-sp OS=Macaca fascicularis
GN=QtsA-10054 PE=2 SV=1
Length = 772
Score = 60.1 bits (144), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 59/101 (58%), Gaps = 10/101 (9%)
Query: 82 VVAMDCEMVGISQGNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRPRDLR- 140
+ +DCEM S+G + L R+SLV + G + DE V+P +++D+ T SGI + L
Sbjct: 228 LFGLDCEMCLTSKGRE--LTRISLVAEGGCCVMDELVKPENKILDYLTSFSGITKKILNP 285
Query: 141 ---KAKDFPTVQKKVAELI-EGRILVGHALHNDLKALLLTH 177
K KD VQ+++ L+ +LVGH+L DL+AL + H
Sbjct: 286 VTTKLKD---VQRQLKALLPPDAVLVGHSLDLDLRALKMIH 323
>sp|Q7TT28|REXO1_MOUSE RNA exonuclease 1 homolog OS=Mus musculus GN=Rexo1 PE=1 SV=1
Length = 1213
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 54/98 (55%), Gaps = 4/98 (4%)
Query: 82 VVAMDCEMVGISQGNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRPRDLRK 141
V A+DCEM + G + L RV++V+ ++YD FV+P VVD+ TR SG+ DL
Sbjct: 1052 VFALDCEMSYTTYGLE--LTRVTVVDTDMQVVYDTFVKPDNEVVDYNTRFSGVTEADLVD 1109
Query: 142 AK-DFPTVQKKVAELIEG-RILVGHALHNDLKALLLTH 177
VQ + + IL+GH+L +DL AL + H
Sbjct: 1110 TSITLRDVQAVLLSMFSADTILIGHSLESDLLALKVIH 1147
>sp|Q9SN09|SDN4_ARATH Putative small RNA degrading nuclease 4 OS=Arabidopsis thaliana
GN=SDN4 PE=3 SV=1
Length = 322
Score = 57.4 bits (137), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 59/104 (56%), Gaps = 3/104 (2%)
Query: 82 VVAMDCEMVGISQGNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRPRDLRK 141
++A+DCEMV G + + RV V++ +I DEFV+P + VVD+RT I+G+ D++K
Sbjct: 75 MLALDCEMVLCEDGTEGVV-RVGAVDRNLKVILDEFVKPHKPVVDYRTAITGVTAEDVQK 133
Query: 142 AK-DFPTVQKKVAELIE-GRILVGHALHNDLKALLLTHSKKDLR 183
A +Q+K+ + G IL+ H + D + + + LR
Sbjct: 134 ATLSLVDIQEKLRPFLSAGAILIDHPIVIDTSLVFKYPNSRKLR 177
>sp|Q5AL29|REXO3_CANAL RNA exonuclease 3 OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=REX3 PE=3 SV=1
Length = 404
Score = 57.0 bits (136), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 64/110 (58%), Gaps = 13/110 (11%)
Query: 82 VVAMDCEMVGISQGNKSALGRVSLVNKW-GNLIYDEFVRPLERVVDFRTRISGIRPRDLR 140
V+ +DCEM ++G + L R++ ++ + + D F++P+ +VDF TR SGI
Sbjct: 241 VLGIDCEMGFTTKGFE--LMRITAIDYFTSKTVLDIFIKPIGEIVDFNTRYSGIH----E 294
Query: 141 KAKDFPTVQK---KVAELIEGR-ILVGHALHNDLKALLLTHSKKDLRDTS 186
DF + ++ K+ E+++ IL+GH L ND+ A+ L H +++ DTS
Sbjct: 295 LTDDFLSWEQSMEKLGEIMDSETILIGHGLENDMNAMRLIH--ENIIDTS 342
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.132 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,153,325
Number of Sequences: 539616
Number of extensions: 2827239
Number of successful extensions: 6600
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 6419
Number of HSP's gapped (non-prelim): 141
length of query: 193
length of database: 191,569,459
effective HSP length: 111
effective length of query: 82
effective length of database: 131,672,083
effective search space: 10797110806
effective search space used: 10797110806
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)