Query 029428
Match_columns 193
No_of_seqs 240 out of 1085
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 20:59:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029428.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029428hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wlj_A Interferon stimulated g 99.9 8.9E-28 3E-32 193.6 10.3 112 79-190 4-115 (189)
2 2p1j_A POLIII, DNA polymerase 99.9 2.8E-25 9.5E-30 178.4 10.6 114 74-189 6-130 (186)
3 2gui_A DNA polymerase III epsi 99.9 4E-24 1.4E-28 172.0 10.4 107 80-188 9-136 (194)
4 2igi_A Oligoribonuclease; RNAs 99.9 8.7E-24 3E-28 168.2 8.6 106 79-185 4-133 (180)
5 2gbz_A Oligoribonuclease; ORN, 99.9 8.1E-24 2.8E-28 171.2 4.8 109 79-188 8-140 (194)
6 1w0h_A 3'-5' exonuclease ERI1; 99.9 1.3E-23 4.4E-28 169.9 5.9 111 79-189 9-146 (204)
7 3tr8_A Oligoribonuclease; tran 99.9 8.8E-24 3E-28 171.2 4.8 108 79-187 8-139 (186)
8 3mxm_B Three prime repair exon 99.9 8.2E-23 2.8E-27 171.1 8.4 111 79-189 11-159 (242)
9 1zbh_A 3'-5' exonuclease ERI1; 99.9 2.1E-22 7.2E-27 173.2 7.9 111 79-189 77-214 (299)
10 1y97_A Three prime repair exon 99.9 9.1E-22 3.1E-26 162.8 10.2 110 79-188 9-152 (238)
11 3u3y_B Three prime repair exon 99.9 7.7E-22 2.6E-26 171.4 8.4 109 79-187 11-157 (314)
12 2f96_A Ribonuclease T; RNAse, 99.8 2.8E-22 9.5E-27 165.1 3.2 115 75-189 24-167 (224)
13 2xri_A ERI1 exoribonuclease 3; 99.8 9.3E-22 3.2E-26 162.3 5.0 95 80-174 31-142 (224)
14 1zbu_A ERI-1 homolog, 3'-5' ex 99.8 8.4E-22 2.9E-26 173.3 3.8 111 79-189 127-264 (349)
15 3v9w_A Ribonuclease T; DEDD nu 99.8 2.5E-21 8.5E-26 160.2 3.8 114 76-189 33-175 (235)
16 3cg7_A CRN-4, cell death-relat 99.8 3.6E-21 1.2E-25 166.5 4.8 111 79-189 18-155 (308)
17 2qxf_A Exodeoxyribonuclease I; 99.8 7.8E-19 2.7E-23 160.2 8.4 95 79-174 8-113 (482)
18 4hec_A Putative uncharacterize 98.2 3.6E-06 1.2E-10 68.0 7.5 102 70-174 12-122 (190)
19 1x9m_A DNA polymerase; DNA plo 98.2 3.8E-06 1.3E-10 79.5 7.9 82 82-188 1-94 (698)
20 2kfn_A Klenow fragment of DNA 98.1 1.3E-05 4.4E-10 74.6 10.2 90 81-188 27-122 (605)
21 4gmj_B CCR4-NOT transcription 96.8 0.0024 8.1E-08 54.4 6.7 93 80-173 34-165 (285)
22 1qht_A Protein (DNA polymerase 96.7 0.0042 1.4E-07 59.4 8.7 79 78-174 133-220 (775)
23 1s5j_A DNA polymerase I; repli 96.3 0.014 4.7E-07 56.4 9.6 90 77-174 187-288 (847)
24 1noy_A Protein (DNA polymerase 96.3 0.012 4.2E-07 51.6 8.5 98 77-174 103-224 (388)
25 3iay_A DNA polymerase delta ca 95.8 0.013 4.5E-07 57.1 6.8 86 78-173 247-345 (919)
26 2gv9_A DNA polymerase; polymer 95.1 0.074 2.5E-06 53.2 9.4 36 139-174 395-434 (1193)
27 4dfk_A DNA polymerase I, therm 94.7 0.0097 3.3E-07 54.7 1.7 73 81-187 11-83 (540)
28 3qex_A DNA polymerase, GP43; d 94.7 0.11 3.8E-06 50.5 9.0 101 73-173 101-226 (903)
29 3saf_A Exosome component 10; e 94.2 0.067 2.3E-06 47.8 6.0 82 80-188 129-214 (428)
30 2d5r_A CCR4-NOT transcription 93.9 0.16 5.4E-06 42.4 7.2 93 80-173 24-155 (252)
31 2py5_A DNA polymerase; protein 93.7 0.16 5.3E-06 47.0 7.4 17 158-174 55-71 (575)
32 3k59_A POL II, DNA polymerase 93.1 0.34 1.2E-05 46.4 9.1 85 75-174 148-237 (786)
33 1vk0_A Hypothetical protein; h 92.6 0.52 1.8E-05 37.8 8.2 38 151-188 99-140 (206)
34 2e6m_A Werner syndrome ATP-dep 91.6 0.24 8.1E-06 39.0 5.0 35 150-184 86-124 (208)
35 3pv8_A DNA polymerase I; DNA p 90.3 0.29 9.9E-06 45.4 4.9 77 81-187 30-112 (592)
36 1uoc_A POP2; hydrolase, DEDD n 90.1 1 3.4E-05 38.2 7.8 94 79-173 37-170 (289)
37 2p51_A SPCC18.06C protein; DED 90.0 1.3 4.4E-05 38.3 8.5 94 79-173 44-176 (333)
38 2a1r_A Poly(A)-specific ribonu 89.2 0.29 1E-05 43.6 4.0 35 137-173 262-296 (430)
39 1yt3_A Ribonuclease D, RNAse D 88.2 1.9 6.4E-05 37.2 8.4 38 150-187 64-105 (375)
40 2hbj_A Exosome complex exonucl 85.8 1.2 4E-05 39.3 5.7 37 151-187 150-190 (410)
41 3ikm_A DNA polymerase subunit 84.9 0.095 3.2E-06 51.8 -1.9 32 157-188 193-228 (1172)
42 3d45_A Poly(A)-specific ribonu 82.2 0.74 2.5E-05 41.8 3.0 30 142-173 262-291 (507)
43 3cym_A Uncharacterized protein 79.0 8.3 0.00028 34.1 8.6 37 150-186 85-122 (440)
44 3q7c_A Nucleoprotein; deddh ex 78.1 13 0.00043 30.3 8.5 101 78-186 55-159 (243)
45 3mwp_A Nucleoprotein; structur 66.2 31 0.0011 31.1 8.9 102 77-186 388-493 (577)
46 2a1r_A Poly(A)-specific ribonu 47.4 8.5 0.00029 34.0 2.2 14 80-93 22-35 (430)
47 3d45_A Poly(A)-specific ribonu 43.6 10 0.00036 34.2 2.2 14 80-93 24-37 (507)
48 2l9a_X LAK160-P12; cationic, p 28.3 58 0.002 17.0 2.6 18 12-29 6-23 (26)
49 3dqz_A Alpha-hydroxynitrIle ly 21.5 68 0.0023 23.7 3.2 37 132-168 42-84 (258)
No 1
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Probab=99.95 E-value=8.9e-28 Score=193.64 Aligned_cols=112 Identities=40% Similarity=0.707 Sum_probs=99.7
Q ss_pred CCcEEEEEEeecCCCCCcEeEEEEEEEEeCCCcEEEEEEecCCCccccccccccCCCHHHHccCCCHHHHHHHHHHHhCC
Q 029428 79 LTDVVAMDCEMVGISQGNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRPRDLRKAKDFPTVQKKVAELIEG 158 (193)
Q Consensus 79 ~~~~v~lD~EtTGl~~~~i~eia~V~vv~~~g~~i~~~lV~P~~~i~~~~t~ihGIt~e~l~~a~~~~ev~~~l~~~l~g 158 (193)
..+||+|||||||+++....+|++|.+++.+|.++|++||+|..+|+++++++||||+++|+++|+|.+++.+|.+|+++
T Consensus 4 ~~~~vviD~ETTGl~~~~~~~iiei~~v~~~g~~i~~~lV~P~~~i~~~~~~i~GIt~~~l~~a~~~~~v~~~~~~~l~~ 83 (189)
T 1wlj_A 4 SREVVAMDCEMVGLGPHRESGLARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTPQHMVGATPFAVARLEILQLLKG 83 (189)
T ss_dssp --CEEEEEEEEEEETTTTEEEEEEEEEECTTCCEEEEEEEECSSCEEECCHHHHCCCHHHHTTCEEHHHHHHHHHHHHTT
T ss_pred CCeEEEEEeECcCcCCCCCceEEEEEEEeCCCCEEEeeEecCCCCCCccccCCCCCCHHHHcCCCCHHHHHHHHHHHHCC
Confidence 45799999999999965434555556667789999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeChHhhHHHhcccCCCCceeecCCcCc
Q 029428 159 RILVGHALHNDLKALLLTHSKKDLRDTSEYQP 190 (193)
Q Consensus 159 ~ilVgHn~~fDl~~L~~~~p~~~iiDT~~~~~ 190 (193)
++|||||+.||+.||+..+|+..++||..+++
T Consensus 84 ~~lV~hn~~fD~~~L~~~~~~~~~idt~~~~~ 115 (189)
T 1wlj_A 84 KLVVGHDLKHDFQALKEDMSGYTIYDTSTDRL 115 (189)
T ss_dssp SEEEESSHHHHHHHTTCCCTTCEEEEGGGCHH
T ss_pred CEEEECCcHHHHHHHHHhCCCCceechHhhhh
Confidence 99999999999999999999888999998754
No 2
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=99.92 E-value=2.8e-25 Score=178.43 Aligned_cols=114 Identities=21% Similarity=0.385 Sum_probs=95.7
Q ss_pred CCCCCCCcEEEEEEeecCCC--CCcEeEEEEEEEEeCCCcEE--EEEEecCCCccccccccccCCCHHHHccCCCHHHHH
Q 029428 74 NDDFSLTDVVAMDCEMVGIS--QGNKSALGRVSLVNKWGNLI--YDEFVRPLERVVDFRTRISGIRPRDLRKAKDFPTVQ 149 (193)
Q Consensus 74 ~~~~~~~~~v~lD~EtTGl~--~~~i~eia~V~vv~~~g~~i--~~~lV~P~~~i~~~~t~ihGIt~e~l~~a~~~~ev~ 149 (193)
+..+...+||+|||||||++ .++|+|||+|.+.+ |.++ |+.||+|..+++++++++||||+++|+++++|.+++
T Consensus 6 ~~~l~~~~~v~iD~ETTGl~~~~~~IieIg~v~~~~--g~i~~~f~~lv~P~~~i~~~~~~i~GIt~~~l~~~~~~~~v~ 83 (186)
T 2p1j_A 6 DSTFGDATFVVLDFETTGLDPQVDEIIEIGAVKIQG--GQIVDEYHTLIKPSREISRKSSEITGITQEMLENKRSIEEVL 83 (186)
T ss_dssp -------CEEEEEEEESCSCTTTCCEEEEEEEEEET--TEEEEEEEEECBCSSCCCHHHHHHHCCCHHHHTTCCBHHHHH
T ss_pred CCcCcCCCEEEEEEECCCCCCCCCeEEEEEEEEEEC--CEEEEEEEEEECcCCCCCHHHhhhcCCCHHHHhcCCCHHHHH
Confidence 44455678999999999998 46899999998864 6665 999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCEEEEeChHhhHHHhcc-------cCCCCceeecCCcC
Q 029428 150 KKVAELIEGRILVGHALHNDLKALLL-------THSKKDLRDTSEYQ 189 (193)
Q Consensus 150 ~~l~~~l~g~ilVgHn~~fDl~~L~~-------~~p~~~iiDT~~~~ 189 (193)
.+|.+|+++++|||||+.||+.||+. ..+...++||..++
T Consensus 84 ~~~~~~l~~~~lv~hn~~fD~~~L~~~~~~~g~~~~~~~~iDt~~l~ 130 (186)
T 2p1j_A 84 PEFLGFLEDSIIVAHNANFDYRFLRLWIKKVMGLDWERPYIDTLALA 130 (186)
T ss_dssp HHHHHHSSSCEEEETTHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHH
T ss_pred HHHHHHHCCCEEEEECcHHHHHHHHHHHHHcCCCCCCCCEEeHHHHH
Confidence 99999999999999999999999962 23456789987653
No 3
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A*
Probab=99.90 E-value=4e-24 Score=172.02 Aligned_cols=107 Identities=23% Similarity=0.290 Sum_probs=94.2
Q ss_pred CcEEEEEEeecCCCC-------CcEeEEEEEEEEeCCCcE---EEEEEecCCCccccccccccCCCHHHHccCCCHHHHH
Q 029428 80 TDVVAMDCEMVGISQ-------GNKSALGRVSLVNKWGNL---IYDEFVRPLERVVDFRTRISGIRPRDLRKAKDFPTVQ 149 (193)
Q Consensus 80 ~~~v~lD~EtTGl~~-------~~i~eia~V~vv~~~g~~---i~~~lV~P~~~i~~~~t~ihGIt~e~l~~a~~~~ev~ 149 (193)
.+||+|||||||+++ ++|+|||+|.+.+ |.+ .|++||+|..+++++++++||||+++|+++|+|.+|+
T Consensus 9 ~~~vviD~ETTGl~~~~~~~~~~~Iieig~v~~~~--~~~~~~~f~~lv~P~~~i~~~~~~i~GIt~~~l~~~~~~~~v~ 86 (194)
T 2gui_A 9 TRQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVN--RRLTGNNFHVYLKPDRLVDPEAFGVHGIADEFLLDKPTFAEVA 86 (194)
T ss_dssp CEEEEEEEEESCCCSSSSTTTTCCEEEEEEEEEET--TEECSCCEEEECCCSSCCCHHHHHHHCCCHHHHTTSCCHHHHH
T ss_pred CCEEEEEeeCCCCCCcccCCCCCEEEEEEEEEEEC--CeEeccEEEEEECcCCcCCHHHHHhhCcCHHHHhCCCCHHHHH
Confidence 579999999999986 6899999998864 554 3999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCEEEEeChHhhHHHhcc-------cCCC----CceeecCCc
Q 029428 150 KKVAELIEGRILVGHALHNDLKALLL-------THSK----KDLRDTSEY 188 (193)
Q Consensus 150 ~~l~~~l~g~ilVgHn~~fDl~~L~~-------~~p~----~~iiDT~~~ 188 (193)
.+|.+|+++++|||||+.||+.||+. ..|. ..++||..+
T Consensus 87 ~~~~~~l~~~~lv~hn~~fD~~~L~~~~~~~g~~~p~~~~~~~~iDt~~l 136 (194)
T 2gui_A 87 DEFMDYIRGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCKVTDSLAV 136 (194)
T ss_dssp HHHHHHHTTSEEEETTHHHHHHHHHHHHHHTCSCCCCGGGTSEEEEHHHH
T ss_pred HHHHHHHCCCeEEEEchHHhHHHHHHHHHHcCCCCccccccCceeeHHHH
Confidence 99999999999999999999999963 2221 468998654
No 4
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A
Probab=99.89 E-value=8.7e-24 Score=168.18 Aligned_cols=106 Identities=13% Similarity=0.174 Sum_probs=88.6
Q ss_pred CCcEEEEEEeecCCCC--CcEeEEEEEEEEeCCCcEE---EEEEecCCCcccc----cc---ccccCCCHHHHccCCCHH
Q 029428 79 LTDVVAMDCEMVGISQ--GNKSALGRVSLVNKWGNLI---YDEFVRPLERVVD----FR---TRISGIRPRDLRKAKDFP 146 (193)
Q Consensus 79 ~~~~v~lD~EtTGl~~--~~i~eia~V~vv~~~g~~i---~~~lV~P~~~i~~----~~---t~ihGIt~e~l~~a~~~~ 146 (193)
..+||+|||||||+++ ++|+|||+| +++.+|.++ |++||+|..++++ ++ +.+||||+++++++|+|.
T Consensus 4 ~~~~v~iD~ETTGl~~~~~~IieIg~v-~~~~~~~~~~~~~~~lv~P~~~i~~~i~~~~~~~~~itGIt~~~l~~~~~~~ 82 (180)
T 2igi_A 4 ENNLIWIDLEMTGLDPERDRIIEIATL-VTDANLNILAEGPTIAVHQSDEQLALMDDWNVRTHTASGLVERVKASTMGDR 82 (180)
T ss_dssp GGCEEEEEEEESSSCTTTCCEEEEEEE-EECTTCCEEEEEEEEECCCCHHHHTTCCHHHHHHHHHTTHHHHHHHCCCCHH
T ss_pred CCcEEEEEeeCCCCCCCCCceEEEEEE-EEcCCCcEecCCcceEECCCHHHhhcCCHHHHHHHHHcCCCHHHHhcCCCHH
Confidence 3579999999999984 689999999 556667665 9999999987644 44 456999999999999999
Q ss_pred HHHHHHHHHhCC------CEEEEeChHhhHHHhcccCC------CCceeec
Q 029428 147 TVQKKVAELIEG------RILVGHALHNDLKALLLTHS------KKDLRDT 185 (193)
Q Consensus 147 ev~~~l~~~l~g------~ilVgHn~~fDl~~L~~~~p------~~~iiDT 185 (193)
+|+.+|.+|+++ .+|||||+.||+.||+..++ .+..+|+
T Consensus 83 ~v~~~~~~~l~~~~~~~~~~lv~hn~~fD~~fL~~~~~~~~~~~~~~~~d~ 133 (180)
T 2igi_A 83 EAELATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYMPELEAYFHYRYLDV 133 (180)
T ss_dssp HHHHHHHHHHTTTSCTTTSCEEESSHHHHHHHHHHHCHHHHHHSCSCEEET
T ss_pred HHHHHHHHHHHHhCCCCCceEEecCHHHHHHHHHHHHHHhccCCCcceeeH
Confidence 999999999986 79999999999999985432 2457894
No 5
>2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV}
Probab=99.88 E-value=8.1e-24 Score=171.22 Aligned_cols=109 Identities=15% Similarity=0.188 Sum_probs=90.7
Q ss_pred CCcEEEEEEeecCCC--CCcEeEEEEEEEEeCCCcEE---EEEEecCCCcc----ccccccc---cCCCHHHHccCCCHH
Q 029428 79 LTDVVAMDCEMVGIS--QGNKSALGRVSLVNKWGNLI---YDEFVRPLERV----VDFRTRI---SGIRPRDLRKAKDFP 146 (193)
Q Consensus 79 ~~~~v~lD~EtTGl~--~~~i~eia~V~vv~~~g~~i---~~~lV~P~~~i----~~~~t~i---hGIt~e~l~~a~~~~ 146 (193)
..+||+|||||||++ .++|+|||+|. .++.++++ |+.+|+|..++ +++++++ ||||+++++++|+|.
T Consensus 8 ~~~~vviD~ETTGl~p~~d~IieIgav~-~~~~~~~~~~~~~~~v~p~~~i~~~~~~~~~~~~~itGIt~~~l~~~p~~~ 86 (194)
T 2gbz_A 8 NDRLIWIDLEMTGLDTDRDSIIEIATIV-TDAQLNVLAEGPELAIAHSLETLEAMDEWNRNQHRRSGLWQRVLDSQVTHA 86 (194)
T ss_dssp CCEEEEEEEEESCSCTTTCCEEEEEEEE-EETTCCEEEECCCEECCCCHHHHHTSCSHHHHHHHHHTHHHHHHHCCCCHH
T ss_pred CCCEEEEEeECCCCCCCCCccEEEEEEE-EcCCcceeccCceEEEeCCHHHhhccchHHHHHHHhhCCCHHHHhcCCCHH
Confidence 457999999999999 46899999988 67555444 88999999776 5555555 999999999999999
Q ss_pred HHHHHHHHHhCCCE------EEEeChHhhHHHhcccCC------CCceeecCCc
Q 029428 147 TVQKKVAELIEGRI------LVGHALHNDLKALLLTHS------KKDLRDTSEY 188 (193)
Q Consensus 147 ev~~~l~~~l~g~i------lVgHn~~fDl~~L~~~~p------~~~iiDT~~~ 188 (193)
+++.+|.+|+++++ |||||+.||+.||+..++ .+..+|+..+
T Consensus 87 ev~~~~~~~l~~~~~~~~~~lvghn~~FD~~fL~~~~~~~~~~~~~~~~d~~~l 140 (194)
T 2gbz_A 87 QAEAQTVAFLGEWIRAGASPMCGNSICQDRRFLHRQMSRLERYFHYRNLDVSTI 140 (194)
T ss_dssp HHHHHHHHHHTTTCCTTSSCEEESSHHHHHHHHHHHCHHHHHHSCSCEEEHHHH
T ss_pred HHHHHHHHHHHHhCCCCCceEEecCHHHhHHHHHHHHHHhcccCCCccccHHHH
Confidence 99999999999988 999999999999975433 2457887644
No 6
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5
Probab=99.88 E-value=1.3e-23 Score=169.91 Aligned_cols=111 Identities=19% Similarity=0.197 Sum_probs=95.2
Q ss_pred CCcEEEEEEeecCCCC------CcEeEEEEEEEEeCCCcEE--EEEEecCCC--ccccccccccCCCHHHHccCCCHHHH
Q 029428 79 LTDVVAMDCEMVGISQ------GNKSALGRVSLVNKWGNLI--YDEFVRPLE--RVVDFRTRISGIRPRDLRKAKDFPTV 148 (193)
Q Consensus 79 ~~~~v~lD~EtTGl~~------~~i~eia~V~vv~~~g~~i--~~~lV~P~~--~i~~~~t~ihGIt~e~l~~a~~~~ev 148 (193)
...||+||+||||+++ ++|+|||+|.+...+|.++ |++||+|.. +|+++++++||||+++|+++|+|.+|
T Consensus 9 ~~~~vviD~ETTGl~~~~~~~~~~Iieigav~~~~~~g~i~~~f~~lv~P~~~~~i~~~~~~i~GIt~~~l~~~~~~~~v 88 (204)
T 1w0h_A 9 YDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQV 88 (204)
T ss_dssp SSEEEECCCEECCCTTCCTTSCCCEEEEEEEEEETTTCSEEEEEEEEBCCSSSCSCCHHHHHHHCCCHHHHHTSBCHHHH
T ss_pred cCEEEEEEEecCCcCCCCCCCCCcEEEEEEEEEECCCCEEeeeeeeEECCCCCCccCHHHHHHhCCCHHHHhCCCCHHHH
Confidence 4579999999999984 6899999998752357776 999999998 89999999999999999999999999
Q ss_pred HHHHHHHhCCCE-------EEEeChHhhHH-Hhc-------ccCCCC--ceeecCCcC
Q 029428 149 QKKVAELIEGRI-------LVGHALHNDLK-ALL-------LTHSKK--DLRDTSEYQ 189 (193)
Q Consensus 149 ~~~l~~~l~g~i-------lVgHn~~fDl~-~L~-------~~~p~~--~iiDT~~~~ 189 (193)
+.+|.+|+++.+ +||||+.||+. ||+ +.+|.+ .++||..++
T Consensus 89 ~~~~~~~l~~~~~~~~~~~lv~hn~~fD~~~~L~~~~~~~~~~~p~~~~~~~dt~~l~ 146 (204)
T 1w0h_A 89 LKKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSY 146 (204)
T ss_dssp HHHHHHHHHHTTBTTTBCEEEEESSTTTTHHHHHHHHHHHTCCCCGGGSEEEEHHHHH
T ss_pred HHHHHHHHHhcCCCCCCcEEEEEECcchHHHHHHHHHHHhCCCCcccccceEEHHHHH
Confidence 999999998765 99999999997 996 234443 689987654
No 7
>3tr8_A Oligoribonuclease; transcription, hydrolase; 2.50A {Coxiella burnetii}
Probab=99.88 E-value=8.8e-24 Score=171.20 Aligned_cols=108 Identities=14% Similarity=0.165 Sum_probs=86.9
Q ss_pred CCcEEEEEEeecCCC--CCcEeEEEEEEEEeCCCcEE---EEEEecCCC----cccccccc---ccCCCHHHHccCCCHH
Q 029428 79 LTDVVAMDCEMVGIS--QGNKSALGRVSLVNKWGNLI---YDEFVRPLE----RVVDFRTR---ISGIRPRDLRKAKDFP 146 (193)
Q Consensus 79 ~~~~v~lD~EtTGl~--~~~i~eia~V~vv~~~g~~i---~~~lV~P~~----~i~~~~t~---ihGIt~e~l~~a~~~~ 146 (193)
..+||+|||||||++ .++|+|||+| ++++++.++ ++.+|+|+. .+++.+.. +||||+++++++|+++
T Consensus 8 ~~~~v~~D~ETTGL~p~~d~IiEIgaV-~~d~~~~i~~~~~~~~i~~p~~~l~~~~~~~~~ih~ltGIt~~~l~~~p~~~ 86 (186)
T 3tr8_A 8 DDNLIWLDLEMTGLDPERDRIIEIATI-VTNSHLDILAEGPAFAIHQPDKLLTAMDNWNTSHHTASGLLERVKNSSVDEV 86 (186)
T ss_dssp TTCEEEEEEEESSSCTTTCCEEEEEEE-EECTTCCEEEECCCEECCCCHHHHTTSCHHHHHHHHHTSHHHHHHTCCCCHH
T ss_pred CCcEEEEEEECCCCCCCCCceEEEEEE-EEcCCeEEeeeeEEEEEeCCccccccCCcccHHHHhccCCCHHHHhcCCCHH
Confidence 567999999999999 4799999999 888766655 456786443 23455444 5699999999999999
Q ss_pred HHHHHHHHHh------CCCEEEEeChHhhHHHhcccC------CCCceeecCC
Q 029428 147 TVQKKVAELI------EGRILVGHALHNDLKALLLTH------SKKDLRDTSE 187 (193)
Q Consensus 147 ev~~~l~~~l------~g~ilVgHn~~fDl~~L~~~~------p~~~iiDT~~ 187 (193)
+++.+|++|+ ++++|||||+.||+.||+..+ ..++++|++.
T Consensus 87 ev~~~~l~fl~~~~~~~~~~lvghn~~FD~~FL~~~~~~~~~~~~~~~iDvsT 139 (186)
T 3tr8_A 87 EAETLTLAFLEKYVSAGKSPLCGNSVCQDRRFLSRYMPRLNQFFHYRHLDVTT 139 (186)
T ss_dssp HHHHHHHHHHTTTSCTTCSCEEESSTHHHHHHHHHHCHHHHHHSCSCEEEHHH
T ss_pred HHHHHHHHHHHHhccCCCcEEEEEcHHHhHHHHHHHHHHcCCCCCCcEEeHHH
Confidence 9999999999 889999999999999997433 2356899433
No 8
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=99.87 E-value=8.2e-23 Score=171.06 Aligned_cols=111 Identities=14% Similarity=0.178 Sum_probs=94.3
Q ss_pred CCcEEEEEEeecCCC--CCcEeEEEEEEEEeCC--------C---------c--EEEEEEecCCCccccccccccCCCHH
Q 029428 79 LTDVVAMDCEMVGIS--QGNKSALGRVSLVNKW--------G---------N--LIYDEFVRPLERVVDFRTRISGIRPR 137 (193)
Q Consensus 79 ~~~~v~lD~EtTGl~--~~~i~eia~V~vv~~~--------g---------~--~i~~~lV~P~~~i~~~~t~ihGIt~e 137 (193)
...||+||+||||++ .++|+|||+|.+.++. | . ..|++||+|..+|+++++.+||||++
T Consensus 11 ~~~~vv~D~ETTGl~~~~d~IiEIgav~v~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~li~P~~~i~~~~~~i~GIt~~ 90 (242)
T 3mxm_B 11 MQTLIFLDLEATGLPSSRPEVTELCLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSLCIAPGKACSPGASEITGLSKA 90 (242)
T ss_dssp CSEEEEEEEEESSCGGGCCCEEEEEEEEEEHHHHHTSCCCCSSSCCCCCCCSCCEEEEEECCCSSCCCHHHHHHHCCCHH
T ss_pred cceEEEEEeecCCCCCCCCeeEEEEEEEecCCcccccccccccccccccccchhheeEEEECCCCCCCHHHHHhcCCCHH
Confidence 557999999999998 5799999999987641 1 2 35999999999999999999999999
Q ss_pred HHccC--CCHH-HHHHHHHHHhCC----CEEEEeCh-HhhHHHhcc-------cCC--CCceeecCCcC
Q 029428 138 DLRKA--KDFP-TVQKKVAELIEG----RILVGHAL-HNDLKALLL-------THS--KKDLRDTSEYQ 189 (193)
Q Consensus 138 ~l~~a--~~~~-ev~~~l~~~l~g----~ilVgHn~-~fDl~~L~~-------~~p--~~~iiDT~~~~ 189 (193)
+|+++ |+|+ +++.+|.+|+++ ++|||||+ .||+.||+. ..+ ...++||..++
T Consensus 91 ~l~~~g~p~~~~ev~~~~~~fl~~~~~~~~lVaHNav~FD~~fL~~~~~r~g~~~~~~~~~~iDtl~l~ 159 (242)
T 3mxm_B 91 ELEVQGRQRFDDNLAILLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAAL 159 (242)
T ss_dssp HHHHTTCCCSCHHHHHHHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTTCEEEEHHHHH
T ss_pred HHHhcCCCchhHHHHHHHHHHHhcCCCCCEEEEcCChHhhHHHHHHHHHHcCCCCCccCCeEeehHHHH
Confidence 99998 8997 999999999998 99999995 999999962 221 23678987653
No 9
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=99.86 E-value=2.1e-22 Score=173.22 Aligned_cols=111 Identities=20% Similarity=0.232 Sum_probs=95.6
Q ss_pred CCcEEEEEEeecCCC------CCcEeEEEEEEEEeCCCcEE--EEEEecCCC--ccccccccccCCCHHHHccCCCHHHH
Q 029428 79 LTDVVAMDCEMVGIS------QGNKSALGRVSLVNKWGNLI--YDEFVRPLE--RVVDFRTRISGIRPRDLRKAKDFPTV 148 (193)
Q Consensus 79 ~~~~v~lD~EtTGl~------~~~i~eia~V~vv~~~g~~i--~~~lV~P~~--~i~~~~t~ihGIt~e~l~~a~~~~ev 148 (193)
...||+||+||||++ .++|+|||+|.+....|.++ |++||+|.. +|+++++.+||||+++|+++++|.+|
T Consensus 77 ~~~~vviD~ETTGl~~~~~~~~~~IIeIgaV~v~~~~g~i~~~f~~lV~P~~~~~i~~~~~~ihGIt~e~v~~ap~~~ev 156 (299)
T 1zbh_A 77 YDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQV 156 (299)
T ss_dssp CSEEEEECCEECCCTTCCTTCCCCEEEEEEEEEETTTCCEEEEEEEEBCCSSSCSCCHHHHHHHCCCHHHHHTSBCHHHH
T ss_pred CceEEEEEeecccCCCCCCCCCCceEEEEEEEEECCCCeEeeeeeeeecCCCCCCCCHHHHHHhCCCHHHHhcCCCHHHH
Confidence 357999999999995 46899999998876567776 999999998 89999999999999999999999999
Q ss_pred HHHHHHHhCCC-------EEEEeChHhhHH-Hhcc-------cCCC--CceeecCCcC
Q 029428 149 QKKVAELIEGR-------ILVGHALHNDLK-ALLL-------THSK--KDLRDTSEYQ 189 (193)
Q Consensus 149 ~~~l~~~l~g~-------ilVgHn~~fDl~-~L~~-------~~p~--~~iiDT~~~~ 189 (193)
+.+|.+|+++. ++||||+.||+. ||+. ..|. ..++||..++
T Consensus 157 l~~f~~~l~~~~~~~~~~~lVahn~~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~ 214 (299)
T 1zbh_A 157 LKKVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSY 214 (299)
T ss_dssp HHHHHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCGGGSEEEEHHHHH
T ss_pred HHHHHHHHhhcccCCCCcEEEEEeCHHHHHHHHHHHHHHcCCCCCcccchHHHHHHHH
Confidence 99999999864 999999999999 9963 2342 2588986543
No 10
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5
Probab=99.86 E-value=9.1e-22 Score=162.85 Aligned_cols=110 Identities=16% Similarity=0.181 Sum_probs=92.7
Q ss_pred CCcEEEEEEeecCCC--CCcEeEEEEEEEEeC--------------CCcE--EEEEEecCCCccccccccccCCCHHHH-
Q 029428 79 LTDVVAMDCEMVGIS--QGNKSALGRVSLVNK--------------WGNL--IYDEFVRPLERVVDFRTRISGIRPRDL- 139 (193)
Q Consensus 79 ~~~~v~lD~EtTGl~--~~~i~eia~V~vv~~--------------~g~~--i~~~lV~P~~~i~~~~t~ihGIt~e~l- 139 (193)
..+||+||+||||++ .++|+|||+|.+.+. .+.+ .|+.||+|..+|+++++++||||+++|
T Consensus 9 ~~~~v~iD~ETTGl~~~~~~IieIg~v~~~~~~~~~~~~~~~~~~~~~~i~~~f~~lv~P~~~i~~~~~~i~GIt~~~l~ 88 (238)
T 1y97_A 9 AETFVFLDLEATGLPSVEPEIAELSLFAVHRSSLENPEHDESGALVLPRVLDKLTLCMCPERPFTAKASEITGLSSEGLA 88 (238)
T ss_dssp CSEEEEEEEEESSCGGGCCCEEEEEEEEEEHHHHTSCBC---CCCBCCSSCEEEEEECCCSSCCCHHHHHHHCCCHHHHH
T ss_pred cCeEEEEEeeCCCcCCCCCcEEEEEEEEecccccccccccccccccccccceeeEEEECCCCcCCHHHHHHhCCCHHHHh
Confidence 457999999999998 478999999988753 0233 499999999999999999999999999
Q ss_pred -ccCCCH-HHHHHHHHHHhCC----CEEEEeCh-HhhHHHhcc-------cCC-CCceeecCCc
Q 029428 140 -RKAKDF-PTVQKKVAELIEG----RILVGHAL-HNDLKALLL-------THS-KKDLRDTSEY 188 (193)
Q Consensus 140 -~~a~~~-~ev~~~l~~~l~g----~ilVgHn~-~fDl~~L~~-------~~p-~~~iiDT~~~ 188 (193)
.++|+| ++++..|.+|+++ .+|||||+ .||+.||+. .++ .+.++||..+
T Consensus 89 ~~~~p~f~~~v~~~l~~fl~~~~~~~~lVahN~~~FD~~fL~~~~~~~g~~~~~~~~~iDt~~l 152 (238)
T 1y97_A 89 RCRKAGFDGAVVRTLQAFLSRQAGPICLVAHNGFDYDFPLLCAELRRLGARLPRDTVCLDTLPA 152 (238)
T ss_dssp HTTCCCSCHHHHHHHHHHHTTSCSSEEEEETTTTTTHHHHHHHHHHHHTCCCCTTCEEEEHHHH
T ss_pred hcCCCccHHHHHHHHHHHHHhCCCCCEEEecCchhhhHHHHHHHHHHcCCCCCCCCEEEEHHHH
Confidence 578999 4999999999986 89999999 999999962 233 2568998754
No 11
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B*
Probab=99.85 E-value=7.7e-22 Score=171.41 Aligned_cols=109 Identities=14% Similarity=0.157 Sum_probs=93.4
Q ss_pred CCcEEEEEEeecCCC--CCcEeEEEEEEEEeCC-------------------CcEEEEEEecCCCccccccccccCCCHH
Q 029428 79 LTDVVAMDCEMVGIS--QGNKSALGRVSLVNKW-------------------GNLIYDEFVRPLERVVDFRTRISGIRPR 137 (193)
Q Consensus 79 ~~~~v~lD~EtTGl~--~~~i~eia~V~vv~~~-------------------g~~i~~~lV~P~~~i~~~~t~ihGIt~e 137 (193)
...||+||+||||++ .++|+|||+|.+.++. ....|++||+|..+|++++++|||||++
T Consensus 11 ~~tfVv~DlETTGL~~~~d~IIEIgaV~v~~~~l~~~~~~~g~~~~~~~~~~v~~~~~~lI~P~~~I~~~a~~IhGIT~e 90 (314)
T 3u3y_B 11 MQTLIFLDLEATGLPSSRPEVTELCLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSLCIAPGKACSPGASEITGLSKA 90 (314)
T ss_dssp CSEEEEEEEEESSCGGGCCCEEEEEEEEEEHHHHHC--CCCSSSCCCCCCCSSCEEEEEECBCSSCCCHHHHHHHSCCHH
T ss_pred cCCEEEEEEECCCCCCCCCeEEEEEEEEEECCccccccccccccccccccceeeeeEEEEECCCCCCCHHHHHhcCCCHH
Confidence 557999999999998 6899999999987541 1245999999999999999999999999
Q ss_pred HHccC--CCH-HHHHHHHHHHhCC----CEEEEeC-hHhhHHHhcc-------cCC--CCceeecCC
Q 029428 138 DLRKA--KDF-PTVQKKVAELIEG----RILVGHA-LHNDLKALLL-------THS--KKDLRDTSE 187 (193)
Q Consensus 138 ~l~~a--~~~-~ev~~~l~~~l~g----~ilVgHn-~~fDl~~L~~-------~~p--~~~iiDT~~ 187 (193)
+|+++ |+| ++++.+|.+|+++ ++||||| +.||+.||+. ..+ ...++||..
T Consensus 91 ~l~~aG~P~f~~ev~~~l~~fL~~~~~~~vLVAHNga~FD~~FL~~el~r~Gl~~~~~~~~~iDTL~ 157 (314)
T 3u3y_B 91 ELEVQGRQRFDDNLAILLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIA 157 (314)
T ss_dssp HHHHTTCCBSCHHHHHHHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTTCEEEEHHH
T ss_pred HHHhCCCCCcHHHHHHHHHHHHhcCCCCcEEEEeCcHHHHHHHHHHHHHHcCCCCCCCCceEEeHHH
Confidence 99999 899 6999999999998 8999999 9999999962 221 234788865
No 12
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5
Probab=99.84 E-value=2.8e-22 Score=165.07 Aligned_cols=115 Identities=22% Similarity=0.149 Sum_probs=94.1
Q ss_pred CCCCCCcEEEEEEeecCCCC--CcEeEEEEEEEEe-CCCcE----EEEEEecC--CCccccccccccCCCHHH-HccCCC
Q 029428 75 DDFSLTDVVAMDCEMVGISQ--GNKSALGRVSLVN-KWGNL----IYDEFVRP--LERVVDFRTRISGIRPRD-LRKAKD 144 (193)
Q Consensus 75 ~~~~~~~~v~lD~EtTGl~~--~~i~eia~V~vv~-~~g~~----i~~~lV~P--~~~i~~~~t~ihGIt~e~-l~~a~~ 144 (193)
..+....||+||+||||+++ ++|+|||+|.+.. .+|.+ .|++||+| ..+|+++++++||||+++ ++++++
T Consensus 24 ~~~~~~~~vviD~ETTGl~~~~~~IieIg~v~~~~~~~g~i~~~~~f~~lV~P~~~~~i~~~~~~ihGIt~e~~v~~~~~ 103 (224)
T 2f96_A 24 RRFRGYLPVVVDVETGGFNSATDALLEIAATTVGMDEKGFLFPEHTYFFRIEPFEGANIEPAALEFTGIKLDHPLRMAVQ 103 (224)
T ss_dssp HHTTTEEEEEEEEEESSSCTTTBCEEEEEEEEEEECTTSCEEEEEEEEEEBCCCTTCBCCHHHHHHHTCCTTCTTCCCBC
T ss_pred ccccCCcEEEEEeeCCCCCCCCCeeEEEEEEEEEEcCCCcccccceEEEEECCCCCCCCCHHHHHHhCCCHHHHHhcCCC
Confidence 34456689999999999994 6899999998872 13653 39999999 569999999999999975 899999
Q ss_pred HHHHHHHHHHHhC---------CCEEEEeChHhhHHHhcc-----cC---C--CCceeecCCcC
Q 029428 145 FPTVQKKVAELIE---------GRILVGHALHNDLKALLL-----TH---S--KKDLRDTSEYQ 189 (193)
Q Consensus 145 ~~ev~~~l~~~l~---------g~ilVgHn~~fDl~~L~~-----~~---p--~~~iiDT~~~~ 189 (193)
+.+++.+|.+++. +.+|||||+.||+.||+. .. | ...++||..++
T Consensus 104 ~~~v~~~~~~~l~~~~~~~~~~~~~lV~hn~~FD~~fL~~~~~~~g~~~~p~~~~~~iDt~~l~ 167 (224)
T 2f96_A 104 EEAALTEIFRGIRKALKANGCKRAILVGHNSSFDLGFLNAAVARTGIKRNPFHPFSSFDTATLA 167 (224)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSEEEEEETTHHHHHHHHHHHHHHHTCCCCCEEEEEEEEHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhcccCCCEEEEeChhhhHHHHHHHHHHcCCCcCCccccceeeHHHHH
Confidence 9999999999884 789999999999999962 22 2 24578987553
No 13
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens}
Probab=99.84 E-value=9.3e-22 Score=162.34 Aligned_cols=95 Identities=18% Similarity=0.230 Sum_probs=86.4
Q ss_pred CcEEEEEEeecCCCC----CcEeEEEEEEEEeCCCcEE--EEEEecCCC--ccccccccccCCCHHHHccCCCHHHHHHH
Q 029428 80 TDVVAMDCEMVGISQ----GNKSALGRVSLVNKWGNLI--YDEFVRPLE--RVVDFRTRISGIRPRDLRKAKDFPTVQKK 151 (193)
Q Consensus 80 ~~~v~lD~EtTGl~~----~~i~eia~V~vv~~~g~~i--~~~lV~P~~--~i~~~~t~ihGIt~e~l~~a~~~~ev~~~ 151 (193)
..||+||+||||+++ ++|+|||+|.+.+..|.++ |++||+|.. +|+++++++||||+++|+++|+|.+|+.+
T Consensus 31 ~~~vviD~ETTGl~~~~d~~~IieIgav~v~~~~~~i~~~f~~lV~P~~~~~i~~~~~~ltGIt~~~v~~a~~~~~v~~~ 110 (224)
T 2xri_A 31 HYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQVLER 110 (224)
T ss_dssp SEEEEECCEECCCC-CCSSCCEEEEEEEEEETTTCCEEEEEEEECCCSSSCSCCHHHHHHHCCCHHHHTTCCCHHHHHHH
T ss_pred CeEEEEEEEcCCCCCCCCCcceEEEEEEEEecCCcEEeeeeeeEECCCCCCcCCHHHHHHhCcCHHHHcCCCCHHHHHHH
Confidence 579999999999994 3899999998876556666 999999997 89999999999999999999999999999
Q ss_pred HHHHhCCCEEEEeCh--------HhhHHH-hc
Q 029428 152 VAELIEGRILVGHAL--------HNDLKA-LL 174 (193)
Q Consensus 152 l~~~l~g~ilVgHn~--------~fDl~~-L~ 174 (193)
|.+|+++.++||||+ .||+.| |+
T Consensus 111 f~~~l~~~~lv~hn~~~~~~t~g~fD~~fll~ 142 (224)
T 2xri_A 111 VDEWMAKEGLLDPNVKSIFVTCGDWDLKVMLP 142 (224)
T ss_dssp HHHHHHHTTTTSTTSCEEEEESSSHHHHTHHH
T ss_pred HHHHHhhcccccCCCceEEEEeChhhHHHHHH
Confidence 999999999999999 999997 63
No 14
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}
Probab=99.83 E-value=8.4e-22 Score=173.34 Aligned_cols=111 Identities=20% Similarity=0.232 Sum_probs=95.5
Q ss_pred CCcEEEEEEeecCCC------CCcEeEEEEEEEEeCCCcEE--EEEEecCCC--ccccccccccCCCHHHHccCCCHHHH
Q 029428 79 LTDVVAMDCEMVGIS------QGNKSALGRVSLVNKWGNLI--YDEFVRPLE--RVVDFRTRISGIRPRDLRKAKDFPTV 148 (193)
Q Consensus 79 ~~~~v~lD~EtTGl~------~~~i~eia~V~vv~~~g~~i--~~~lV~P~~--~i~~~~t~ihGIt~e~l~~a~~~~ev 148 (193)
...||+||+||||++ .++|+|||+|.+....|.++ |++||+|.. +|+++++.+||||+++|+++++|.+|
T Consensus 127 ~~~~vviD~ETTGl~~~~~~~~deIIEIgaV~vd~~~g~i~~~f~~lVkP~~~~~I~~~~t~ihGIT~e~v~~ap~~~eV 206 (349)
T 1zbu_A 127 YDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQV 206 (349)
T ss_dssp CSEEEECCCEECCCTTCCTTCCCCEEECCEEEEETTTTEEEEEECCBEECSSSCSCCHHHHHHHCCCHHHHHTSEEHHHH
T ss_pred CCeEEEEEEecCCCCCcCCCCCCeEEEEEEEEEECCCceEeEEEEEEECCCCCCCCCHHHHHHhCCCHHHHhCCCCHHHH
Confidence 468999999999994 46899999998875557766 999999998 99999999999999999999999999
Q ss_pred HHHHHHHhCCC-------EEEEeChHhhHH-Hhcc-------cCCC--CceeecCCcC
Q 029428 149 QKKVAELIEGR-------ILVGHALHNDLK-ALLL-------THSK--KDLRDTSEYQ 189 (193)
Q Consensus 149 ~~~l~~~l~g~-------ilVgHn~~fDl~-~L~~-------~~p~--~~iiDT~~~~ 189 (193)
+.+|.+|+++. ++||||+.||+. ||+. .+|. ..++||..++
T Consensus 207 l~~f~~~l~~~~~~~~~~~lVaHNa~FD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~ 264 (349)
T 1zbu_A 207 LKKVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSY 264 (349)
T ss_dssp HHHHHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCGGGSEEEEHHHHH
T ss_pred HHHHHHHHhcccccCCCcEEEEECcHhhHHHHHHHHHHHhCCCCccccchHHHHHHHH
Confidence 99999999864 999999999999 9963 2342 2578986554
No 15
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A
Probab=99.82 E-value=2.5e-21 Score=160.24 Aligned_cols=114 Identities=18% Similarity=0.183 Sum_probs=94.0
Q ss_pred CCCCCcEEEEEEeecCCC--CCcEeEEEEEEEE-eCCCcE----EEEEEecC--CCccccccccccCCCHH-HHccCCCH
Q 029428 76 DFSLTDVVAMDCEMVGIS--QGNKSALGRVSLV-NKWGNL----IYDEFVRP--LERVVDFRTRISGIRPR-DLRKAKDF 145 (193)
Q Consensus 76 ~~~~~~~v~lD~EtTGl~--~~~i~eia~V~vv-~~~g~~----i~~~lV~P--~~~i~~~~t~ihGIt~e-~l~~a~~~ 145 (193)
.+....||+||+||||++ .++|+|||+|.+. +.+|.+ .|+.||+| ..+|+++++++||||++ ++++++++
T Consensus 33 ~l~~~~~vviD~ETTGl~~~~~~IieIgav~~~~~~~g~i~~~~~f~~~v~P~~~~~i~~~~~~i~GIt~e~~v~~~~~~ 112 (235)
T 3v9w_A 33 RFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNGIDPNDPDRGAVSG 112 (235)
T ss_dssp HTTTEEEEEEEEEESSSCTTTBCEEEEEEEEEEECTTSCEEEEEEEEEEBCCCTTCBCCHHHHHHHCCCTTCGGGCCBCH
T ss_pred cccCCcEEEEEEeCCCCCCCCCeEEEEEEEEEEEcCCCcccccceEEEEECCCCCCCCCHHHHHHhCCCHHHHHhcCCCH
Confidence 345667999999999998 4689999999886 123553 38999999 56899999999999999 99999999
Q ss_pred HHHHHHHHHHh---------CCCEEEEeChHhhHHHhccc-----C---C--CCceeecCCcC
Q 029428 146 PTVQKKVAELI---------EGRILVGHALHNDLKALLLT-----H---S--KKDLRDTSEYQ 189 (193)
Q Consensus 146 ~ev~~~l~~~l---------~g~ilVgHn~~fDl~~L~~~-----~---p--~~~iiDT~~~~ 189 (193)
.+++.+|.+|+ ++.++||||+.||+.||+.. . | ...++||..+.
T Consensus 113 ~~vl~~~~~~l~~~~~~~~~~~~~lVahN~~fD~~~L~~~~~~~g~~~~p~~~~~~~Dt~~la 175 (235)
T 3v9w_A 113 YEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLKRNPFHPFATFDTAALA 175 (235)
T ss_dssp HHHHHHHHHHHHHHHTTTTCCEEEEEETTTHHHHHHHHHHHHHTTCCCCCEEEEEEEEHHHHH
T ss_pred HHHHHHHHHHHHHHhhhccCCCcEEEEeChHHHHHHHHHHHHHcCCCCCCCCCCcEEEhHHHH
Confidence 99999999999 57899999999999999632 2 1 13578987653
No 16
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A
Probab=99.82 E-value=3.6e-21 Score=166.46 Aligned_cols=111 Identities=13% Similarity=0.200 Sum_probs=93.2
Q ss_pred CCcEEEEEEeecCCCC--C---cEeEEEEEEEEeCCCcEE----EEEEecCCCc--cccccccccCCCHHHHccCCCHHH
Q 029428 79 LTDVVAMDCEMVGISQ--G---NKSALGRVSLVNKWGNLI----YDEFVRPLER--VVDFRTRISGIRPRDLRKAKDFPT 147 (193)
Q Consensus 79 ~~~~v~lD~EtTGl~~--~---~i~eia~V~vv~~~g~~i----~~~lV~P~~~--i~~~~t~ihGIt~e~l~~a~~~~e 147 (193)
..+||+||+||||+++ + +|+|||+|.+...+|.++ |++||+|... |+++++++||||+++|+++|+|.+
T Consensus 18 ~~~~vviD~ETTGl~~~~d~~~eIIEIgaV~vd~~~g~i~~~~~f~~lV~P~~~p~i~~~~~~ltGIt~e~v~~ap~~~e 97 (308)
T 3cg7_A 18 FDTLLILDFETTSDAANQDYPCEVIQFAIVAYDVPNDKIREDISFNKYVKPVLNRTLTKNCVDFTGIPQRSIDTADTFDV 97 (308)
T ss_dssp CSEEEEEEEEECCBTTBCSCCCCEEEEEEEEEETTTTEEEEEEEEEEECBCSSBCSCCHHHHHHHCCCHHHHHTSCBHHH
T ss_pred CCeEEEEEeecCCCCCCCCCCCCeEEEEEEEEEcCCCEEeeccceeeEECCCCCCCCCHHHHHHcCCCHHHHhcCCCHHH
Confidence 4579999999999994 3 899999998742346543 8999999984 999999999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEeCh------HhhH-HHhc-------ccCCC--CceeecCCcC
Q 029428 148 VQKKVAELIEGRILVGHAL------HNDL-KALL-------LTHSK--KDLRDTSEYQ 189 (193)
Q Consensus 148 v~~~l~~~l~g~ilVgHn~------~fDl-~~L~-------~~~p~--~~iiDT~~~~ 189 (193)
|+.+|.+|+++.++||||+ .||+ .||+ +..|. ..++||..++
T Consensus 98 vl~~f~~~l~~~~lvahn~~lv~~g~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~ 155 (308)
T 3cg7_A 98 VYEQFQQWLITLGLEEGKFAFVCDSRQDLWRIAQYQMKLSNIQMPAFFRQYINLYKIF 155 (308)
T ss_dssp HHHHHHHHHHHHCCCTTSEEEEESSSHHHHTHHHHHHHHTTCCCCGGGSEEEEHHHHH
T ss_pred HHHHHHHHHHhCCcCCcceEEeccCcccHHHHHHHHHHHcCCCCchhhcceeeHHHHH
Confidence 9999999999999999999 9999 6985 23342 3578987654
No 17
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=99.76 E-value=7.8e-19 Score=160.22 Aligned_cols=95 Identities=15% Similarity=0.184 Sum_probs=84.1
Q ss_pred CCcEEEEEEeecCCCC--CcEeEEEEEEEEeCCCcEE---EEEEecCCCcc--ccccccccCCCHHHHccCCCH-HHHHH
Q 029428 79 LTDVVAMDCEMVGISQ--GNKSALGRVSLVNKWGNLI---YDEFVRPLERV--VDFRTRISGIRPRDLRKAKDF-PTVQK 150 (193)
Q Consensus 79 ~~~~v~lD~EtTGl~~--~~i~eia~V~vv~~~g~~i---~~~lV~P~~~i--~~~~t~ihGIt~e~l~~a~~~-~ev~~ 150 (193)
...||+||+||||+++ ++|+|||+|.+. .+|.++ |+.||+|..++ ++.++.|||||+++|.+++.+ .+|+.
T Consensus 8 ~~~~vv~DlETTGl~p~~d~IIEIgaV~vd-~~g~ii~~~f~~lVkP~~~ilp~p~a~~IhGIT~e~l~~ap~~~~evl~ 86 (482)
T 2qxf_A 8 QSTFLFHDYETFGTHPALDRPAQFAAIRTD-SEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENEAAFAA 86 (482)
T ss_dssp CCEEEEEEEEESSSCTTTSCEEEEEEEEEC-TTSCBCSCCEEEEBCCCTTCCCCHHHHHHHCCCHHHHHHHCBCHHHHHH
T ss_pred CCCEEEEEEECCCCCCCCCeEEEEEEEEEE-CCCeEEeeeeEEEECCCCCCCCCHHHHHHhCCCHHHHhcCCCCHHHHHH
Confidence 4579999999999993 689999999764 457666 99999999887 568889999999999987655 99999
Q ss_pred HHHHHhC--CCEEEEeC-hHhhHHHhc
Q 029428 151 KVAELIE--GRILVGHA-LHNDLKALL 174 (193)
Q Consensus 151 ~l~~~l~--g~ilVgHn-~~fDl~~L~ 174 (193)
+|.+|++ |+++|||| +.||+.||+
T Consensus 87 ~f~~~l~~~~~~lVaHNs~~FD~~fL~ 113 (482)
T 2qxf_A 87 RIHSLFTVPKTCILGYNNVRFDDEVTR 113 (482)
T ss_dssp HHHHHHTSTTEEEEESSTTTTHHHHHH
T ss_pred HHHHHHcCCCCEEEEECCHHHHHHHHH
Confidence 9999999 99999999 999999996
No 18
>4hec_A Putative uncharacterized protein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, unknown; 1.80A {Mycobacterium tuberculosis}
Probab=98.19 E-value=3.6e-06 Score=68.00 Aligned_cols=102 Identities=16% Similarity=0.081 Sum_probs=62.3
Q ss_pred CCCCCCCCCCCcEEEEEEeecCCCC-CcEeEEEEEEEEeCCCcEEEEEEecC-CCcccccc-cc-ccCCCHHHHccCCCH
Q 029428 70 LTPINDDFSLTDVVAMDCEMVGISQ-GNKSALGRVSLVNKWGNLIYDEFVRP-LERVVDFR-TR-ISGIRPRDLRKAKDF 145 (193)
Q Consensus 70 ~~p~~~~~~~~~~v~lD~EtTGl~~-~~i~eia~V~vv~~~g~~i~~~lV~P-~~~i~~~~-t~-ihGIt~e~l~~a~~~ 145 (193)
+.+...+..+..-+++|||+|+... .++|+|| +|..+|.+.|....-. ....+++. .. +.++.........++
T Consensus 12 ~~~~~~~p~~m~r~FlDTEFt~d~~~~eLISIG---lV~EdGrEFYav~~d~d~~~~~~wVr~~Vlp~L~~~~~~~~~s~ 88 (190)
T 4hec_A 12 LEAQTQGPGSMVRYFYDTEFIEDGHTIELISIG---VVAEDGREYYAVSTEFDPERAGSWVRTHVLPKLPPPASQLWRSR 88 (190)
T ss_dssp ---------CEEEEEEEEEEEECSSCEEEEEEE---EEETTSCEEEEEETTSCGGGCCHHHHHHTGGGSCCTTSTTEECH
T ss_pred ccccccCCCceeEEEEeeeecCCCCCCCEEEEE---EEcCCCCEEEEEecCCChhhCcHHHHhccccCCCCCcccccCCH
Confidence 3444444445567899999998553 3455555 4567788765444211 12333433 22 466654444445689
Q ss_pred HHHHHHHHHHhCCC-----EEEEeChHhhHHHhc
Q 029428 146 PTVQKKVAELIEGR-----ILVGHALHNDLKALL 174 (193)
Q Consensus 146 ~ev~~~l~~~l~g~-----ilVgHn~~fDl~~L~ 174 (193)
.++..+|.+||... .|+||+..||..+|.
T Consensus 89 ~~i~~~L~~FL~~~~~~~~eLwa~~~~yD~~~L~ 122 (190)
T 4hec_A 89 QQIRLDLEEFLRIDGTDSIELWAWVGAYDHVALC 122 (190)
T ss_dssp HHHHHHHHHHTTTTSSCEEEEEESSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEecccccHHHHH
Confidence 99999999999632 599999999999995
No 19
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A*
Probab=98.15 E-value=3.8e-06 Score=79.53 Aligned_cols=82 Identities=17% Similarity=0.135 Sum_probs=53.1
Q ss_pred EEEEEEeecCCCCCcEeEEEEEEEEeCCCcEEEEEEecCCCccccccccccCCCHHHHccCCCHHHHHHHHHHHh-CCCE
Q 029428 82 VVAMDCEMVGISQGNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRPRDLRKAKDFPTVQKKVAELI-EGRI 160 (193)
Q Consensus 82 ~v~lD~EtTGl~~~~i~eia~V~vv~~~g~~i~~~lV~P~~~i~~~~t~ihGIt~e~l~~a~~~~ev~~~l~~~l-~g~i 160 (193)
+||||+||||+++.. ..|..|.+.+..+...+ .+.|. .+++++..|.+|+ .+.+
T Consensus 1 ~vv~D~ETtGl~~~~-d~i~~iqi~~~~~~~~~--~~~p~----------------------~i~~~l~~L~~~l~~~~~ 55 (698)
T 1x9m_A 1 MIVSDIEANALLESV-TKFHCGVIYDYSTAEYV--SYRPS----------------------DFGAYLDALEAEVARGGL 55 (698)
T ss_dssp CEEEEEEESSCGGGC-CCEEEEEEEETTTTEEE--EECGG----------------------GHHHHHHHHHHHHHTTCC
T ss_pred CEEEEcCCCCcCCCC-CEEEEEEEEecCCCcEE--EEChH----------------------HHHHHHHHHHHHHhcCCe
Confidence 589999999999421 24566666665433332 22221 2234556677777 5789
Q ss_pred EEEeCh-HhhHHHhccc--------CC-C-CceeecCCc
Q 029428 161 LVGHAL-HNDLKALLLT--------HS-K-KDLRDTSEY 188 (193)
Q Consensus 161 lVgHn~-~fDl~~L~~~--------~p-~-~~iiDT~~~ 188 (193)
+||||+ .||+.+|... .. . ..++||...
T Consensus 56 kV~HNa~kfD~~~L~~~~~~~~~~Gi~l~~~~~~DTmla 94 (698)
T 1x9m_A 56 IVFHNGHKYDVPALTKLAKLQLNREFHLPRENCIDTLVL 94 (698)
T ss_dssp EEESSTTTTHHHHHHHHHHHHHCCCCCCCGGGEEEHHHH
T ss_pred EEEcCChHHHHHHHHHhhhhcccCCccCCCCcchhHHHH
Confidence 999999 9999999633 21 2 358898654
No 20
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=98.10 E-value=1.3e-05 Score=74.63 Aligned_cols=90 Identities=18% Similarity=0.114 Sum_probs=60.9
Q ss_pred cEEEEEEeecCCC--CCcEeEEEEEEEEeCCCcEEEEEEecCCCccccccccccCCCHHHHccCCCHHHHHHHHHHHhCC
Q 029428 81 DVVAMDCEMVGIS--QGNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRPRDLRKAKDFPTVQKKVAELIEG 158 (193)
Q Consensus 81 ~~v~lD~EtTGl~--~~~i~eia~V~vv~~~g~~i~~~lV~P~~~i~~~~t~ihGIt~e~l~~a~~~~ev~~~l~~~l~g 158 (193)
.+|+||+||||++ .++++.|+.+ +. .|... ||.+... .+ |+ .+++++++++..|.+|+.+
T Consensus 27 ~~va~DtEttgl~~~~~~iv~I~~~-~~--~g~~~---yip~~~~------~~-~~-----~~~l~~~~vl~~L~~~L~d 88 (605)
T 2kfn_A 27 PVFAFDTETDSLDNISANLVGLSFA-IE--PGVAA---YIPVAHD------YL-DA-----PDQISRERALELLKPLLED 88 (605)
T ss_dssp SSEEEEEEESCSCTTTCCEEEEEEE-EE--TTEEE---EEECCCC------ST-TC-----CCCCCHHHHHHHHHHHHTC
T ss_pred CeEEEEEecCCCCcccCceEEEEEE-Ec--CCcEE---EEecccc------cc-cc-----ccccCHHHHHHHHHHHHcC
Confidence 5799999999997 4678877755 32 24432 4421110 01 21 2456789999999999987
Q ss_pred C--EEEEeChHhhHHHhcc-cCC-CCceeecCCc
Q 029428 159 R--ILVGHALHNDLKALLL-THS-KKDLRDTSEY 188 (193)
Q Consensus 159 ~--ilVgHn~~fDl~~L~~-~~p-~~~iiDT~~~ 188 (193)
. ++||||+.||+.+|.. ... ...++||...
T Consensus 89 ~~i~kV~hnak~D~~~L~~~Gi~l~~~~~DT~la 122 (605)
T 2kfn_A 89 EKALKVGQNLKYDRGILANYGIELRGIAFDTMLE 122 (605)
T ss_dssp TTSCEEESSHHHHHHHHHTTTCCCCCEEEEHHHH
T ss_pred CCCeEEEECcHHHHHHHHHCCCCCCCccccHHHH
Confidence 5 8999999999999963 222 2247898643
No 21
>4gmj_B CCR4-NOT transcription complex subunit 7; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens}
Probab=96.79 E-value=0.0024 Score=54.43 Aligned_cols=93 Identities=20% Similarity=0.251 Sum_probs=59.0
Q ss_pred CcEEEEEEeecCCC--C-C--------------------cEeEEEEEEEEeCCCcE-----E--EEEEecCCCc-ccccc
Q 029428 80 TDVVAMDCEMVGIS--Q-G--------------------NKSALGRVSLVNKWGNL-----I--YDEFVRPLER-VVDFR 128 (193)
Q Consensus 80 ~~~v~lD~EtTGl~--~-~--------------------~i~eia~V~vv~~~g~~-----i--~~~lV~P~~~-i~~~~ 128 (193)
..||+||+|++|+. + + .++++| +++.+.+|+. . |+.++.+... ....+
T Consensus 34 ~~fVAiDtEFpGvv~rp~~~~~~t~d~~Y~~lr~nvd~l~iIQlG-Lt~f~~~g~~p~~~~~wqFNF~f~~~~d~~~~~S 112 (285)
T 4gmj_B 34 YNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLG-LTFMNEQGEYPPGTSTWQFNFKFNLTEDMYAQDS 112 (285)
T ss_dssp CCEEEEEEECCCCCCCCTTCCTTSTTHHHHHHHHHHTTSCCCEEE-EEEECTTSCCCSSCCEEEEEBCCCTTTSCCCHHH
T ss_pred CCEEEEEEEecCccCCCCCccCCCHHHHHHHHHHHHHhhcceeEE-EEeeccCCCcCCCeeEEEEEEEeccccccccHHH
Confidence 35999999999985 1 1 388999 5666766642 2 5555566542 22233
Q ss_pred ccc---cCCCHHHH-ccCCCHHHHHHHHHHH----hCCCEEEEeChHhhHHHh
Q 029428 129 TRI---SGIRPRDL-RKAKDFPTVQKKVAEL----IEGRILVGHALHNDLKAL 173 (193)
Q Consensus 129 t~i---hGIt~e~l-~~a~~~~ev~~~l~~~----l~g~ilVgHn~~fDl~~L 173 (193)
.++ |||.-... ..+.+..+..+-+... ..+..+|.|+..+|+.+|
T Consensus 113 I~fL~~~G~DF~k~~~~GI~~~~f~ell~~sglvl~~~v~WvtfH~~yDf~yL 165 (285)
T 4gmj_B 113 IELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYL 165 (285)
T ss_dssp HHHHHHHTCCHHHHHHHCBCHHHHHHHHHTSSSSSCTTCEEEESSCHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHcCCCHHHHHHHHHHhHHHhcCCCceEEecchhhHHHH
Confidence 333 78876654 5667766555444332 145677888888999988
No 22
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A
Probab=96.74 E-value=0.0042 Score=59.35 Aligned_cols=79 Identities=9% Similarity=0.026 Sum_probs=51.8
Q ss_pred CCCcEEEEEEeecCC---C--CCcEeEEEEEEEEeCCCcEEEEEEecCCCccccccccccCCCHHHHccCCCHHHHHHHH
Q 029428 78 SLTDVVAMDCEMVGI---S--QGNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRPRDLRKAKDFPTVQKKV 152 (193)
Q Consensus 78 ~~~~~v~lD~EtTGl---~--~~~i~eia~V~vv~~~g~~i~~~lV~P~~~i~~~~t~ihGIt~e~l~~a~~~~ev~~~l 152 (193)
.+-++++||+||+|. + .+.|+.|+ +.+..+..++. .++ |....+...++..+.+..|
T Consensus 133 ~~l~ilsfDIEt~~~~~p~~~~d~Ii~Is---~~~~~~~~~~t--~~~-------------i~~~~v~~~~~E~~LL~~f 194 (775)
T 1qht_A 133 EELTMLAFAIATLYHEGEEFGTGPILMIS---YADGSEARVIT--WKK-------------IDLPYVDVVSTEKEMIKRF 194 (775)
T ss_dssp CCCCEEEEEEEECCCTTCCTTCSCEEEEE---EECSSCEEEEE--SSC-------------CCCSSEEECSCHHHHHHHH
T ss_pred CCcEEEEEEEEEcCCCCCCCCCCcEEEEE---EEecCCCeeEe--ecc-------------ccccceEEcCCHHHHHHHH
Confidence 466899999999993 3 23455544 44444443321 111 1112344567788888999
Q ss_pred HHHhC---CCEEEEeCh-HhhHHHhc
Q 029428 153 AELIE---GRILVGHAL-HNDLKALL 174 (193)
Q Consensus 153 ~~~l~---g~ilVgHn~-~fDl~~L~ 174 (193)
.+++. -.+|||||. .||+.+|.
T Consensus 195 ~~~i~~~dPDiivGyN~~~FDlpyL~ 220 (775)
T 1qht_A 195 LRVVREKDPDVLITYNGDNFDFAYLK 220 (775)
T ss_dssp HHHHHHHCCSEEEESSTTTTHHHHHH
T ss_pred HHHHHhcCCCEEEEeCCCCccHHHHH
Confidence 88885 359999995 89999994
No 23
>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1
Probab=96.35 E-value=0.014 Score=56.39 Aligned_cols=90 Identities=10% Similarity=0.031 Sum_probs=55.3
Q ss_pred CCCCcEEEEEEee-cCCC---C------CcEeEEEEEEEEeCCCcEEEEEEecCCCccccccccccCCCHHHHccCCCHH
Q 029428 77 FSLTDVVAMDCEM-VGIS---Q------GNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRPRDLRKAKDFP 146 (193)
Q Consensus 77 ~~~~~~v~lD~Et-TGl~---~------~~i~eia~V~vv~~~g~~i~~~lV~P~~~i~~~~t~ihGIt~e~l~~a~~~~ 146 (193)
.++-++++||+|| ||.. + +.|++|+. ++.+|...+ .++++... +.....+.| ..+....+..
T Consensus 187 ~p~l~ilsfDIEt~s~~~g~fP~~~~~~d~Ii~Is~---~~~~g~~~~-~~~~~~~~-~~~~~~i~~---~~v~~~~~E~ 258 (847)
T 1s5j_A 187 IPKIKRVAIDIEVYTPVKGRIPDSQKAEFPIISIAL---AGSDGLKKV-LVLNRNDV-NEGSVKLDG---ISVERFNTEY 258 (847)
T ss_dssp CCCCCEEEEEEEECCSSSSCCCCTTTCCSCEEEEEE---EETTSCEEE-EEECSSCC-CCCCEEETT---EEEEEESSHH
T ss_pred CCCceEEEEEEEeCcCCCCCCCCccccCCcEEEEEE---EccCCCcEE-EEEeCCcc-cccccCCCC---CeEEEeCCHH
Confidence 3456899999999 7531 1 35666664 455554322 24454321 111111111 2244456788
Q ss_pred HHHHHHHHHhC-CCEEEEeCh-HhhHHHhc
Q 029428 147 TVQKKVAELIE-GRILVGHAL-HNDLKALL 174 (193)
Q Consensus 147 ev~~~l~~~l~-g~ilVgHn~-~fDl~~L~ 174 (193)
+++.+|.+++. -.+|||||. .||+.+|.
T Consensus 259 ~LL~~f~~~i~~~diivgyN~~~FDlPyL~ 288 (847)
T 1s5j_A 259 ELLGRFFDILLEYPIVLTFNGDDFDLPYIY 288 (847)
T ss_dssp HHHHHHHHHHTTCSEEEESSTTTTHHHHHH
T ss_pred HHHHHHHHHhccCCEEEEeCCCCchHHHHH
Confidence 99999999997 358999995 89999994
No 24
>1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding, complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A {Enterobacteria phage T4} SCOP: c.55.3.5 PDB: 1noz_A*
Probab=96.35 E-value=0.012 Score=51.59 Aligned_cols=98 Identities=10% Similarity=0.130 Sum_probs=54.7
Q ss_pred CCCCcEEEEEEeecCCC-CC---cEeEEEEEEEEeCCCcEE-EEEEecCC-Ccccccc---------ccccCCCHH---H
Q 029428 77 FSLTDVVAMDCEMVGIS-QG---NKSALGRVSLVNKWGNLI-YDEFVRPL-ERVVDFR---------TRISGIRPR---D 138 (193)
Q Consensus 77 ~~~~~~v~lD~EtTGl~-~~---~i~eia~V~vv~~~g~~i-~~~lV~P~-~~i~~~~---------t~ihGIt~e---~ 138 (193)
.++-++++||+||+|.. ++ ...+|..|++.+..+... .-.++++. ....++. ..+....+. .
T Consensus 103 ~p~l~vlsfDIEt~~~~fP~~~~~~d~Ii~Is~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 182 (388)
T 1noy_A 103 RKFVRVANCDIEVTGDKFPDPMKAEYEIDAITHYDSIDDRFYVFDLLNSMYGSVSKWDAKLAAKLDCEGGDEVPQEILDR 182 (388)
T ss_dssp GGGCCEEEEEEEECCSSCCCTTTCCSCEEEEEEEETTTTEEEEEEECCCSSCCCCCCCHHHHHSCGGGTCCCCCHHHHTT
T ss_pred CCCeEEEEEEEEeCCCCCCCCCCCCCeEEEEEEEEecCCeEEEEEEeeccCCCCCccccccccccccccccccccccCCC
Confidence 34667999999999811 21 112444455555545542 11235432 1111110 011111111 1
Q ss_pred --HccCCCHHHHHHHHHHHhC---CCEEEEeCh-HhhHHHhc
Q 029428 139 --LRKAKDFPTVQKKVAELIE---GRILVGHAL-HNDLKALL 174 (193)
Q Consensus 139 --l~~a~~~~ev~~~l~~~l~---g~ilVgHn~-~fDl~~L~ 174 (193)
+....+-.+.+..+.+++. -.+|+|||. .||+.+|.
T Consensus 183 v~v~~~~~E~~LL~~f~~~i~~~dPDii~GyN~~~FDlpyL~ 224 (388)
T 1noy_A 183 VIYMPFDNERDMLMEYINLWEQKRPAIFTGWNIEGFDVPYIM 224 (388)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHSCCSEEECSSTTTTHHHHHH
T ss_pred eEEEEcCCHHHHHHHHHHHHHHhCCcEEEecCCCCccHHHHH
Confidence 1234677889999999884 479999996 89999983
No 25
>3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA-BI DNA-directed DNA polymerase, exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae}
Probab=95.85 E-value=0.013 Score=57.05 Aligned_cols=86 Identities=10% Similarity=0.089 Sum_probs=53.7
Q ss_pred CCCcEEEEEEeecCCC-------CCcEeEEEEEEEEeCCCcEEEE-EE-ecCCCccccccccccCCCHHHHccCCCHHHH
Q 029428 78 SLTDVVAMDCEMVGIS-------QGNKSALGRVSLVNKWGNLIYD-EF-VRPLERVVDFRTRISGIRPRDLRKAKDFPTV 148 (193)
Q Consensus 78 ~~~~~v~lD~EtTGl~-------~~~i~eia~V~vv~~~g~~i~~-~l-V~P~~~i~~~~t~ihGIt~e~l~~a~~~~ev 148 (193)
++-++++||+||++.+ .+.|++|+.+.-.++....... .| +.+..++ ....+...++..++
T Consensus 247 PplrilSfDIEt~~~~g~fP~~~~D~Ii~IS~~v~~~g~~~~~~r~~f~l~~~~~~----------~~~~V~~~~sE~eL 316 (919)
T 3iay_A 247 APLRIMSFDIECAGRIGVFPEPEYDPVIQIANVVSIAGAKKPFIRNVFTLNTCSPI----------TGSMIFSHATEEEM 316 (919)
T ss_dssp CCCEEEEEEEEECCCTTSCCCTTTCCEEEEEEEEEETTCSSCSEEEEEEESCCCCB----------TTBEEEEESSHHHH
T ss_pred CCceEEEEEEEECCCCCCCCCCCCCcEEEEEEEEecCCCcccceeEEEEecCCCCC----------CCCeEEECCCHHHH
Confidence 4668999999998532 2567777654333322221111 11 2221111 11234555678899
Q ss_pred HHHHHHHhC---CCEEEEeCh-HhhHHHh
Q 029428 149 QKKVAELIE---GRILVGHAL-HNDLKAL 173 (193)
Q Consensus 149 ~~~l~~~l~---g~ilVgHn~-~fDl~~L 173 (193)
+..|.+++. =.+|+|||. .||+.+|
T Consensus 317 L~~F~~~i~~~DPDIIvGyNi~~FDlpyL 345 (919)
T 3iay_A 317 LSNWRNFIIKVDPDVIIGYNTTNFDIPYL 345 (919)
T ss_dssp HHHHHHHHHHHCCSEEEESSTTTTHHHHH
T ss_pred HHHHHHHHHHhCCCEEEecCCccCCHHHH
Confidence 999999985 489999997 7999999
No 26
>2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A {Human herpesvirus 1} PDB: 1dml_B*
Probab=95.15 E-value=0.074 Score=53.22 Aligned_cols=36 Identities=14% Similarity=0.118 Sum_probs=28.6
Q ss_pred HccCCCHHHHHHHHHHHhC---CCEEEEeCh-HhhHHHhc
Q 029428 139 LRKAKDFPTVQKKVAELIE---GRILVGHAL-HNDLKALL 174 (193)
Q Consensus 139 l~~a~~~~ev~~~l~~~l~---g~ilVgHn~-~fDl~~L~ 174 (193)
+..-.+-.+++..|.+++. =.||||||. .||+.+|.
T Consensus 395 V~~~~sE~eLL~~F~~~I~~~DPDIIvGyNi~~FDlpyL~ 434 (1193)
T 2gv9_A 395 VLEFDSEFEMLLAFMTLVKQYGPEFVTGYNIINFDWPFLL 434 (1193)
T ss_dssp EEEESSHHHHHHHHHHHHHHHCCSEEEESSTTTTHHHHHH
T ss_pred EEecCCHHHHHHHHHHHHHhcCCCEEEEcCCcCccHHHHH
Confidence 3334667888999988885 469999996 89999994
No 27
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...
Probab=94.70 E-value=0.0097 Score=54.74 Aligned_cols=73 Identities=14% Similarity=-0.046 Sum_probs=46.3
Q ss_pred cEEEEEEeecCCCCCcEeEEEEEEEEeCCCcEEEEEEecCCCccccccccccCCCHHHHccCCCHHHHHHHHHHHhCCCE
Q 029428 81 DVVAMDCEMVGISQGNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRPRDLRKAKDFPTVQKKVAELIEGRI 160 (193)
Q Consensus 81 ~~v~lD~EtTGl~~~~i~eia~V~vv~~~g~~i~~~lV~P~~~i~~~~t~ihGIt~e~l~~a~~~~ev~~~l~~~l~g~i 160 (193)
+.+++|+|+.+++.-. .++..+.+.. +...| +| . +++..|.+|+.+..
T Consensus 11 ~~valDtE~~~~~~~~-a~Lvgi~la~--~~~a~--~i----------------~-----------~~l~~l~~~l~d~~ 58 (540)
T 4dfk_A 11 EGAFVGFVLSRKEPMW-ADLLALAAAR--GGRVH--RA----------------P-----------EPYKALRDLKEARG 58 (540)
T ss_dssp TTCEEEEEESSSCTTT-CCEEEEEEEE--TTEEE--EC----------------S-----------SHHHHHTTCSSBCS
T ss_pred CceEEEEEecCCccCc-ccEEEEEEEc--CCEEE--Ee----------------h-----------hhHHHHHHHHcCCC
Confidence 4699999999999421 1233344433 22333 11 0 25577888998888
Q ss_pred EEEeChHhhHHHhcccCCCCceeecCC
Q 029428 161 LVGHALHNDLKALLLTHSKKDLRDTSE 187 (193)
Q Consensus 161 lVgHn~~fDl~~L~~~~p~~~iiDT~~ 187 (193)
+||||+.||+.-..+.. . .++||..
T Consensus 59 kV~hn~K~Dl~~~Gi~~-~-~~fDT~l 83 (540)
T 4dfk_A 59 LLAKDLSVLALREGLGL-P-PGDDPML 83 (540)
T ss_dssp TTHHHHHHHHHHTTCCC-C-BCCCHHH
T ss_pred EEEeccHHHHHHcCCCC-C-cceeHHH
Confidence 99999999999222222 2 5778864
No 28
>3qex_A DNA polymerase, GP43; difluorotoluene nucleoside; HET: DNA DOC DGT; 1.73A {Enterobacteria phage RB69} PDB: 3qei_A* 3qer_A* 3qes_A* 3qet_A* 3qep_A* 3qew_A* 3qev_A* 3s9h_A* 3sq0_A* 4dtn_A* 4dto_A* 4dtp_A* 4dtr_A* 4dts_A* 4dtu_A* 4dtx_A* 4e3s_A* 4fjm_A* 4fjl_A* 3spz_A* ...
Probab=94.67 E-value=0.11 Score=50.53 Aligned_cols=101 Identities=14% Similarity=0.178 Sum_probs=63.7
Q ss_pred CCCCCCCCcEEEEEEeecCCC--CC---cEeEEEEEEEEeCCCcEEE--EEEecCCCccccccc---------cccCCCH
Q 029428 73 INDDFSLTDVVAMDCEMVGIS--QG---NKSALGRVSLVNKWGNLIY--DEFVRPLERVVDFRT---------RISGIRP 136 (193)
Q Consensus 73 ~~~~~~~~~~v~lD~EtTGl~--~~---~i~eia~V~vv~~~g~~i~--~~lV~P~~~i~~~~t---------~ihGIt~ 136 (193)
...+.+.-+.++||+|++.-+ ++ .-.+|.+|++.+..+...+ +.+-.|......+.. .-..+..
T Consensus 101 i~~~~~~ir~~~~DIEv~~~~~fPd~~~~~~~Ii~It~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (903)
T 3qex_A 101 IKYDHTKIRVANFDIEVTSPDGFPEPSQAKHPIDAITHYDSIDDRFYVFDLLNSPYGNVEEWSIEIAAKLQEQGGDEVPS 180 (903)
T ss_dssp CCCCGGGSCEEEEEEECCCTTSSCCTTTCCSCCCEEEEEETTTTEEEEEEECEETTEECCCCCHHHHHSCGGGTCCCCCH
T ss_pred cccCcccccEEEEeEEeCCCCCCCCcccCCCCEEEEEEEeCCCCEEEEEEeecccccccccccccccccccccccccccc
Confidence 344556778999999998643 22 1356777778887776653 333333332322221 1122344
Q ss_pred HHHcc-----CCCHHHHHHHHHHHhC---CCEEEEeCh-HhhHHHh
Q 029428 137 RDLRK-----AKDFPTVQKKVAELIE---GRILVGHAL-HNDLKAL 173 (193)
Q Consensus 137 e~l~~-----a~~~~ev~~~l~~~l~---g~ilVgHn~-~fDl~~L 173 (193)
+.+.+ -.+-.+.+.+|.+++. =.+|+|||. .||+.+|
T Consensus 181 ~~~~~v~v~~f~sE~eLL~~F~~~I~~~DPDIItGyN~~~FDlPYL 226 (903)
T 3qex_A 181 EIIDKIIYMPFDNEKELLMEYLNFWQQKTPVILTGWNVESFAIPYV 226 (903)
T ss_dssp HHHTTEEEEEESSHHHHHHHHHHHHHHTCCSEEECSSTTTTHHHHH
T ss_pred ccCCCeEEEEcCCHHHHHHHHHHHHHHhCCCEEEecCCccCCHHHH
Confidence 43332 3567788899988885 479999996 8999999
No 29
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Probab=94.24 E-value=0.067 Score=47.80 Aligned_cols=82 Identities=15% Similarity=0.061 Sum_probs=47.6
Q ss_pred CcEEEEEEeecCCCCCcEeEEEEEEEEeCCCcEEEEEEecCCCccccccccccCCCHHHHccCCCHHHHHHHHHHHhCC-
Q 029428 80 TDVVAMDCEMVGISQGNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRPRDLRKAKDFPTVQKKVAELIEG- 158 (193)
Q Consensus 80 ~~~v~lD~EtTGl~~~~i~eia~V~vv~~~g~~i~~~lV~P~~~i~~~~t~ihGIt~e~l~~a~~~~ev~~~l~~~l~g- 158 (193)
...|+||+|+++++... -.++.|.+....+ . .+|.|.. +. +.+..|..+|.+
T Consensus 129 ~~~vavDtE~~~~~~~~-~~l~lIQLa~~~~-~---~lidpl~-----------l~-----------~~l~~L~~lL~dp 181 (428)
T 3saf_A 129 CQEFAVNLEHHSYRSFL-GLTCLMQISTRTE-D---FIIDTLE-----------LR-----------SDMYILNESLTDP 181 (428)
T ss_dssp CSEEEEEEEEECTTCSS-CEEEEEEEECSSC-E---EEEETTT-----------TG-----------GGGGGGHHHHTCT
T ss_pred CCeEEEEEEecCCCCCC-CeEEEEEEEeCCc-E---EEEEecc-----------ch-----------hhHHHHHHHHcCC
Confidence 56899999999887321 1234444433222 1 2343322 00 112345567763
Q ss_pred -CEEEEeChHhhHHHhc--ccCCCCceeecCCc
Q 029428 159 -RILVGHALHNDLKALL--LTHSKKDLRDTSEY 188 (193)
Q Consensus 159 -~ilVgHn~~fDl~~L~--~~~p~~~iiDT~~~ 188 (193)
-+-||||+.+|+.+|. +...-..++||...
T Consensus 182 ~i~KV~H~~k~Dl~~L~~~~Gi~~~~~fDT~lA 214 (428)
T 3saf_A 182 AIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQA 214 (428)
T ss_dssp TSEEEESSCHHHHHHHHHHHCCCCSSEEEHHHH
T ss_pred CceEEEeehHHHHHHHHHHcCCCcCceeechhH
Confidence 4569999999999995 33333458898643
No 30
>2d5r_A CCR4-NOT transcription complex subunit 7; poly(A) deadenylase, antiproliferative protein, transcription; 2.50A {Homo sapiens} SCOP: c.55.3.9
Probab=93.88 E-value=0.16 Score=42.37 Aligned_cols=93 Identities=20% Similarity=0.260 Sum_probs=57.4
Q ss_pred CcEEEEEEeecCCC--C-C--------------------cEeEEEEEEEEeCCCcE-----E--EEEEecCCC-cccccc
Q 029428 80 TDVVAMDCEMVGIS--Q-G--------------------NKSALGRVSLVNKWGNL-----I--YDEFVRPLE-RVVDFR 128 (193)
Q Consensus 80 ~~~v~lD~EtTGl~--~-~--------------------~i~eia~V~vv~~~g~~-----i--~~~lV~P~~-~i~~~~ 128 (193)
..||+||+|.+|+. + + .++++| +++.+.+|+. . |+.++.... .....+
T Consensus 24 ~~fvAmDtEFpGvv~rp~g~f~~~~~~~Y~~lr~nVd~l~iIQlG-lt~~~~~g~~p~~~~~wqFNF~F~~~~d~~~~~S 102 (252)
T 2d5r_A 24 YNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLG-LTFMNEQGEYPPGTSTWQFNFKFNLTEDMYAQDS 102 (252)
T ss_dssp CCEEEEEEECCCCCCCCCSCCSSHHHHHHHHHHHHHTTCCCCEEE-EEEECTTSCCCSSCCEEEEEBCCCTTTSCCCHHH
T ss_pred CCEEEEEeeecceecccCCCCCCCHHHHHHHHHHhhhhcceeEEE-EEEEccCCCCCCCceeEEEEEEECCcccccCHHH
Confidence 36999999999996 1 1 278899 6666776653 2 344433322 122222
Q ss_pred c---cccCCCHHHH-ccCCCHHHHHHHHHH---Hh-CCCEEEEeChHhhHHHh
Q 029428 129 T---RISGIRPRDL-RKAKDFPTVQKKVAE---LI-EGRILVGHALHNDLKAL 173 (193)
Q Consensus 129 t---~ihGIt~e~l-~~a~~~~ev~~~l~~---~l-~g~ilVgHn~~fDl~~L 173 (193)
. +-|||.-+.. ..+.+..+..+.+.. .+ ++-.+|.|+..+|+.+|
T Consensus 103 i~fL~~~G~DF~k~~~~GI~~~~F~ell~~sglvl~~~v~Witfhg~yDf~yL 155 (252)
T 2d5r_A 103 IELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYL 155 (252)
T ss_dssp HHHHHHHTCCHHHHHHHCBCHHHHHHHHHTTTSSSSSSCEEEESSCHHHHHHH
T ss_pred HHHHHHcCCChhHHHhcCCCHHHHHHHHHhcCcccCCCceEEEecCcchHHHH
Confidence 2 2378877654 566777654444332 11 24478999999999988
No 31
>2py5_A DNA polymerase; protein-DNA complex, replication, transferase/DNA complex; HET: DNA; 1.60A {Bacillus phage PHI29} SCOP: c.55.3.5 e.8.1.1 PDB: 1xhz_A* 1xhx_A* 2ex3_A* 1xi1_A* 2pyj_A* 2pyl_A* 2pzs_A*
Probab=93.65 E-value=0.16 Score=46.98 Aligned_cols=17 Identities=18% Similarity=-0.042 Sum_probs=15.4
Q ss_pred CCEEEEeChHhhHHHhc
Q 029428 158 GRILVGHALHNDLKALL 174 (193)
Q Consensus 158 g~ilVgHn~~fDl~~L~ 174 (193)
+.++++||+.||+.+|-
T Consensus 55 ~~~i~~hNl~FD~~~l~ 71 (575)
T 2py5_A 55 QADLYFHNLKFAGAFII 71 (575)
T ss_dssp CCEEEETTHHHHHHHHH
T ss_pred CCEEEEEChhhhHHHHH
Confidence 68899999999999994
No 32
>3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 3maq_A* 1q8i_A*
Probab=93.14 E-value=0.34 Score=46.45 Aligned_cols=85 Identities=19% Similarity=0.281 Sum_probs=50.7
Q ss_pred CCCCCCcEEEEEEeecCCCCCcEeEEEEEEEEeCCCcEEEEEEecCCC-ccccccccccCCCHHHHccCCCHHHHHHHHH
Q 029428 75 DDFSLTDVVAMDCEMVGISQGNKSALGRVSLVNKWGNLIYDEFVRPLE-RVVDFRTRISGIRPRDLRKAKDFPTVQKKVA 153 (193)
Q Consensus 75 ~~~~~~~~v~lD~EtTGl~~~~i~eia~V~vv~~~g~~i~~~lV~P~~-~i~~~~t~ihGIt~e~l~~a~~~~ev~~~l~ 153 (193)
...++-++++||+|+.+ .|.+..|| +.+.....++ .+.+.. .- .+..-.+..-++-.+.+..|.
T Consensus 148 ~~~p~lrilsfDIE~~~--~g~i~~I~---~~~~~~~~v~--~l~~~~~~~--------~~~~~~V~~f~~E~~lL~~f~ 212 (786)
T 3k59_A 148 DYRPPLKWVSIDIETTR--HGELYCIG---LEGCGQRIVY--MLGPENGDA--------SSLDFELEYVASRPQLLEKLN 212 (786)
T ss_dssp SCCCCCCEEEEEEEECT--TSCEEEEE---EEETTEEEEE--EESSCCSCC--------TTCSSEEEEESSHHHHHHHHH
T ss_pred CCCCCCeEEEEEEEEcC--CCCEEEEE---ecCCCCCeEE--EEecCCCCC--------CCCCceEEEeCCHHHHHHHHH
Confidence 34557789999999995 45666665 3332212222 122211 00 011112333356778888888
Q ss_pred HHhC---CCEEEEeCh-HhhHHHhc
Q 029428 154 ELIE---GRILVGHAL-HNDLKALL 174 (193)
Q Consensus 154 ~~l~---g~ilVgHn~-~fDl~~L~ 174 (193)
+++. =.+|||||. .||+.+|.
T Consensus 213 ~~i~~~dPDii~g~N~~~FD~pyL~ 237 (786)
T 3k59_A 213 AWFANYDPDVIIGWNVVQFDLRMLQ 237 (786)
T ss_dssp HHHHHHCCSEEEESSTTTTHHHHHH
T ss_pred HHHHHcCCCEEEecCCccCcHHHHH
Confidence 8885 359999996 79999993
No 33
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A
Probab=92.62 E-value=0.52 Score=37.79 Aligned_cols=38 Identities=16% Similarity=0.222 Sum_probs=28.0
Q ss_pred HHHHHhC--CCEEEEeChHhhHHHhcccC--CCCceeecCCc
Q 029428 151 KVAELIE--GRILVGHALHNDLKALLLTH--SKKDLRDTSEY 188 (193)
Q Consensus 151 ~l~~~l~--g~ilVgHn~~fDl~~L~~~~--p~~~iiDT~~~ 188 (193)
.|.+||. +-+-|||++.+|+..|+..+ ....++|+..+
T Consensus 99 ~L~~lL~d~~i~Kvg~~~~~D~~~L~~~~g~~~~~~~Dl~~l 140 (206)
T 1vk0_A 99 DLYRFFASKFVTFVGVQIEEDLDLLRENHGLVIRNAINVGKL 140 (206)
T ss_dssp HHHHHHTCSSSEEEESSCHHHHHHHHHHHCCCCSSEEEHHHH
T ss_pred HHHHHhcCCCceEEEeccHHHHHHHHHhcCCCcCCeeeHHHH
Confidence 3667786 46789999999999997433 23568997643
No 34
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A*
Probab=91.57 E-value=0.24 Score=38.98 Aligned_cols=35 Identities=17% Similarity=0.175 Sum_probs=25.6
Q ss_pred HHHHHHhCC--CEEEEeChHhhHHHhcc--cCCCCceee
Q 029428 150 KKVAELIEG--RILVGHALHNDLKALLL--THSKKDLRD 184 (193)
Q Consensus 150 ~~l~~~l~g--~ilVgHn~~fDl~~L~~--~~p~~~iiD 184 (193)
..|..++.+ .+.||||+.+|+.+|.. ...-..++|
T Consensus 86 ~~L~~lL~d~~i~Kv~~~~k~D~~~L~~~~gi~~~~~fD 124 (208)
T 2e6m_A 86 QGLKMLLENKSIKKAGVGIEGDQWKLLRDFDVKLESFVE 124 (208)
T ss_dssp HHHHHHHTCTTSEEEESSHHHHHHHHHHHHCCCCCSEEE
T ss_pred HHHHHHhcCCCceEEEEeeHHHHHHHHHHCCCCCCCEEE
Confidence 356778864 57899999999999964 333334889
No 35
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...
Probab=90.27 E-value=0.29 Score=45.42 Aligned_cols=77 Identities=16% Similarity=0.036 Sum_probs=46.9
Q ss_pred cEEEEEEeecCCCC--CcEeEEEEEEEEeCCCcEEEEEEecCCCccccccccccCCCHHHHccCCCHHHHHHHHHHHhCC
Q 029428 81 DVVAMDCEMVGISQ--GNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRPRDLRKAKDFPTVQKKVAELIEG 158 (193)
Q Consensus 81 ~~v~lD~EtTGl~~--~~i~eia~V~vv~~~g~~i~~~lV~P~~~i~~~~t~ihGIt~e~l~~a~~~~ev~~~l~~~l~g 158 (193)
.-.++|+|++|.+. .+++- +.+... ... .||.+. | ..++..|..+|.+
T Consensus 30 ~~~aldtE~~~~~~~~a~Lvg---isla~~--~~a--~yIp~~----------~-------------~~~l~~Lk~lLed 79 (592)
T 3pv8_A 30 DKAALVVEVVEENYHDAPIVG---IAVVNE--HGR--FFLRPE----------T-------------ALADPQFVAWLGD 79 (592)
T ss_dssp SEEEEEEECCSSSCTTCCCCE---EEEEET--TEE--EEECHH----------H-------------HTTCHHHHHHHTC
T ss_pred cCcEEEEEEcCCccCcccEEE---EEEEcC--Cce--EEEccc----------h-------------hhHHHHHHHHHhC
Confidence 45699999999994 34333 444332 222 344110 0 1234567788864
Q ss_pred --CEEEEeChHhhHHHhcc-cC-CCCceeecCC
Q 029428 159 --RILVGHALHNDLKALLL-TH-SKKDLRDTSE 187 (193)
Q Consensus 159 --~ilVgHn~~fDl~~L~~-~~-p~~~iiDT~~ 187 (193)
...|+||+.||+.+|.. .. ....+.||..
T Consensus 80 ~~i~KV~hn~K~Dl~vL~~~Gi~l~g~~fDTmL 112 (592)
T 3pv8_A 80 ETKKKSMFDSKRAAVALKWKGIELCGVSFDLLL 112 (592)
T ss_dssp TTSEEEESSHHHHHHHHHHTTCCCCCEEEEHHH
T ss_pred CCCeEEEechHHHHHHHHHcCCCCCCccchHHH
Confidence 58999999999999953 21 1234778853
No 36
>1uoc_A POP2; hydrolase, DEDD nuclease, mRNA degradation, poly(A) tail, transcription regulation, repressor, phosphorylation.; 2.3A {Saccharomyces cerevisiae} SCOP: c.55.3.9
Probab=90.14 E-value=1 Score=38.23 Aligned_cols=94 Identities=23% Similarity=0.247 Sum_probs=55.5
Q ss_pred CCcEEEEEEeecCCC--C-C--------------------cEeEEEEEEEEeCCCcE------E--EEEEecCCC-cccc
Q 029428 79 LTDVVAMDCEMVGIS--Q-G--------------------NKSALGRVSLVNKWGNL------I--YDEFVRPLE-RVVD 126 (193)
Q Consensus 79 ~~~~v~lD~EtTGl~--~-~--------------------~i~eia~V~vv~~~g~~------i--~~~lV~P~~-~i~~ 126 (193)
...||+||+|.+|+. + + .++++| +++.+.+|+. . |+.++.... ....
T Consensus 37 ~~~fVAmDtEFpGvv~rp~g~f~~~~d~~Yq~lr~nVd~l~iIQlG-Lt~~~~~g~~p~~~~~~wqFNF~F~~~~d~~~~ 115 (289)
T 1uoc_A 37 QYNHVSISTEFVGTLARPIGTFRSKVDYHYQTMRANVDFLNPIQLG-LSLSDANGNKPDNGPSTWQFNFEFDPKKEIMST 115 (289)
T ss_dssp TSCEEEEEEEEEC----------CHHHHHHHHHHHHHTTCEEEEEE-EEEECTTCCCCSSSCSEEEEEBCCCTTCCCCCH
T ss_pred hCCEEEEEeeecceeccCCcccCCCHHHHHHHHHHhhhhccceEEE-EEEEccCCCcCCCCcceEEEEEEECCccccccH
Confidence 357999999999996 1 1 278888 5666766653 2 444433322 1111
Q ss_pred ccc---cccCCCHHHH-ccCCCHHHHHHHHHH--H-h-CCCEEEEeChHhhHHHh
Q 029428 127 FRT---RISGIRPRDL-RKAKDFPTVQKKVAE--L-I-EGRILVGHALHNDLKAL 173 (193)
Q Consensus 127 ~~t---~ihGIt~e~l-~~a~~~~ev~~~l~~--~-l-~g~ilVgHn~~fDl~~L 173 (193)
.+. +-+||.-+.. +.+.+..+..+.+.. + + ++-.+|.++..+|+.+|
T Consensus 116 ~SI~fL~~~G~DF~k~~~~GI~~~~F~ell~~sgLvl~~~v~Witfhg~yDfgyL 170 (289)
T 1uoc_A 116 ESLELLRKSGINFEKHENLGIDVFEFSQLLMDSGLMMDDSVTWITYHAAYDLGFL 170 (289)
T ss_dssp HHHHHHHHTTCCHHHHHHHCBCHHHHHHHHHTSSCSSCTTSEEEESSTTHHHHHH
T ss_pred HHHHHHHHcCCChhHHHHcCCCHHHHHHHHHhcCCccCCCceEEEccCcchHHHH
Confidence 222 3378877664 567777644433322 1 1 24578899999999988
No 37
>2p51_A SPCC18.06C protein; DEDD nuclease fold, hydrolase, gene regulation; 1.40A {Schizosaccharomyces pombe} PDB: 3g0z_A 3g10_A
Probab=89.97 E-value=1.3 Score=38.30 Aligned_cols=94 Identities=19% Similarity=0.201 Sum_probs=59.3
Q ss_pred CCcEEEEEEeecCCC--C-C--------------------cEeEEEEEEEEeCCCcE-----E--EEEEecCCC-ccccc
Q 029428 79 LTDVVAMDCEMVGIS--Q-G--------------------NKSALGRVSLVNKWGNL-----I--YDEFVRPLE-RVVDF 127 (193)
Q Consensus 79 ~~~~v~lD~EtTGl~--~-~--------------------~i~eia~V~vv~~~g~~-----i--~~~lV~P~~-~i~~~ 127 (193)
...||+||+|.+|+. + + .+++|| +++.+.+|+. . |+.++.... .....
T Consensus 44 ~~~fVAmDtEFpGvv~rp~g~f~~~~e~~Yq~lR~NVd~l~iIQlG-Lt~fd~~G~~p~~~~twqFNF~F~~~~d~~~~~ 122 (333)
T 2p51_A 44 RYPVVSMDTEFPGVVARPLGVFKSSDDYHYQTLRANVDSLKIIQIG-LALSDEEGNAPVEACTWQFNFTFNLQDDMYAPE 122 (333)
T ss_dssp TSCEEEEEEECCCCCCCCCSCCSSSHHHHHHHHHHHHHHSCCCEEE-EEEECTTSCCCTTCSEEEEEBCCCTTTSCCCHH
T ss_pred hCCEEEEeeeccccccccccccCCCHHHHHHHHHHhhhhccceEEE-EEEEccCCCCCCCceeEEEEEEECCcccccCHH
Confidence 357999999999997 1 1 278899 6666777753 2 444433322 11222
Q ss_pred cc---cccCCCHHHH-ccCCCHHHHHHHHHH--Hh--CCCEEEEeChHhhHHHh
Q 029428 128 RT---RISGIRPRDL-RKAKDFPTVQKKVAE--LI--EGRILVGHALHNDLKAL 173 (193)
Q Consensus 128 ~t---~ihGIt~e~l-~~a~~~~ev~~~l~~--~l--~g~ilVgHn~~fDl~~L 173 (193)
+. +-+||.-+.. ..+.++.+..+.+.. ++ ++-.+|.++..+|+.+|
T Consensus 123 SI~fL~~~G~DF~k~~~~GI~~~~F~elL~~SGLvl~~~V~Witfhg~YDfgyL 176 (333)
T 2p51_A 123 SIELLTKSGIDFKKHQEVGIEPADFAELLIGSGLVLQEEVTWITFHSGYDFAYL 176 (333)
T ss_dssp HHHHHHHTTCCHHHHHHHCBCHHHHHHHHHTTTSSSCTTCEEEESSCHHHHHHH
T ss_pred HHHHHHHcCCChhHHHHcCCCHHHHHHHHHhcCcccCCCceEEEeccchhHHHH
Confidence 22 2378887665 567777765544432 11 24578889999999988
No 38
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=89.23 E-value=0.29 Score=43.58 Aligned_cols=35 Identities=26% Similarity=0.519 Sum_probs=26.9
Q ss_pred HHHccCCCHHHHHHHHHHHhCCCEEEEeChHhhHHHh
Q 029428 137 RDLRKAKDFPTVQKKVAELIEGRILVGHALHNDLKAL 173 (193)
Q Consensus 137 e~l~~a~~~~ev~~~l~~~l~g~ilVgHn~~fDl~~L 173 (193)
+.+..+.-|..|++.|.+ .+++|||||.-+|+-+|
T Consensus 262 ~~l~~~~Gfr~V~~~L~~--s~KpiVGHN~llDl~~l 296 (430)
T 2a1r_A 262 EELNDAVGFSRVIHAIAN--SGKLVIGHNMLLDVMHT 296 (430)
T ss_dssp HHHHTTSBTHHHHHHHHH--HCCEEEESSCHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHh--CCCceEechhHHHHHHH
Confidence 345566667777766655 48999999999999877
No 39
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=88.25 E-value=1.9 Score=37.21 Aligned_cols=38 Identities=21% Similarity=0.169 Sum_probs=26.9
Q ss_pred HHHHHHhCC--CEEEEeChHhhHHHhcc--cCCCCceeecCC
Q 029428 150 KKVAELIEG--RILVGHALHNDLKALLL--THSKKDLRDTSE 187 (193)
Q Consensus 150 ~~l~~~l~g--~ilVgHn~~fDl~~L~~--~~p~~~iiDT~~ 187 (193)
..|.+++.+ .+.||||+.+|+.+|.. ......++||..
T Consensus 64 ~~L~~ll~d~~i~Kv~h~~k~Dl~~L~~~~Gi~~~~~fDt~l 105 (375)
T 1yt3_A 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQI 105 (375)
T ss_dssp HHHHHHHHCTTSEEEESSCHHHHHHHHHHHSSCCSSEEEHHH
T ss_pred HHHHHHHcCCCceEEEeeHHHHHHHHHHHcCCCCCcEEEcHH
Confidence 446667753 46899999999999953 333236899864
No 40
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*
Probab=85.82 E-value=1.2 Score=39.31 Aligned_cols=37 Identities=22% Similarity=0.058 Sum_probs=26.5
Q ss_pred HHHHHhCC--CEEEEeChHhhHHHhcc--cCCCCceeecCC
Q 029428 151 KVAELIEG--RILVGHALHNDLKALLL--THSKKDLRDTSE 187 (193)
Q Consensus 151 ~l~~~l~g--~ilVgHn~~fDl~~L~~--~~p~~~iiDT~~ 187 (193)
.|..++.+ .+.||||+.+|+.+|.. ...-..++||..
T Consensus 150 ~L~~lL~d~~i~KV~h~~k~Dl~~L~~~~Gi~~~~~fDt~l 190 (410)
T 2hbj_A 150 ILNEVFTNPSIVKVFHGAFMDIIWLQRDLGLYVVGLFDTYH 190 (410)
T ss_dssp GGHHHHTCTTSEEEESSCHHHHHHHHHHHCCCCSSEEEHHH
T ss_pred HHHHHHcCCCceEEEEehHHHHHHHHHHcCCCcCCEEEcHH
Confidence 45667763 56799999999999953 333334899864
No 41
>3ikm_A DNA polymerase subunit gamma-1; human mitochondrial DNA polymerase, disease mutation, DNA replication, DNA-binding, DNA-directed DNA polymerase; HET: DNA; 3.24A {Homo sapiens}
Probab=84.94 E-value=0.095 Score=51.79 Aligned_cols=32 Identities=22% Similarity=0.348 Sum_probs=25.3
Q ss_pred CCCEEEEeChHhhHHHhc----ccCCCCceeecCCc
Q 029428 157 EGRILVGHALHNDLKALL----LTHSKKDLRDTSEY 188 (193)
Q Consensus 157 ~g~ilVgHn~~fDl~~L~----~~~p~~~iiDT~~~ 188 (193)
..++|||||+.||...++ +...+..++||+.|
T Consensus 193 ~~rlIVGHNVsyDRARI~EeY~l~~sk~rFlDTMSL 228 (1172)
T 3ikm_A 193 QEQLVVGHNVSFDRAHIREQYLIQGSRMRFLDTMSM 228 (1172)
T ss_dssp SCCCCBCBCSSSSTTGGGTSSCSSCCCCCCCBTTHH
T ss_pred CccEEEeCCcchhHHHHHHHHhcccCCceeeechhh
Confidence 369999999999999886 23335678999865
No 42
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=82.21 E-value=0.74 Score=41.78 Aligned_cols=30 Identities=30% Similarity=0.521 Sum_probs=21.6
Q ss_pred CCCHHHHHHHHHHHhCCCEEEEeChHhhHHHh
Q 029428 142 AKDFPTVQKKVAELIEGRILVGHALHNDLKAL 173 (193)
Q Consensus 142 a~~~~ev~~~l~~~l~g~ilVgHn~~fDl~~L 173 (193)
+.-|..|++.|.+ .+.+|||||.-+|+.+|
T Consensus 262 ~~Gfr~v~~~L~~--~~kpiVgHN~l~Dl~~l 291 (507)
T 3d45_A 262 AVGFSRVIHAIAN--SGKLVVGHNMLLDVMHT 291 (507)
T ss_dssp HSBTHHHHHHHHH--HCCEEEESSCHHHHHHH
T ss_pred hhhHHHHHHHHHh--CCCeEEEechHHHHHHH
Confidence 3344555554443 48999999999999988
No 43
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=78.97 E-value=8.3 Score=34.12 Aligned_cols=37 Identities=16% Similarity=0.146 Sum_probs=27.0
Q ss_pred HHHHHHhCCCEEEEeChHhhHHHhcc-cCCCCceeecC
Q 029428 150 KKVAELIEGRILVGHALHNDLKALLL-THSKKDLRDTS 186 (193)
Q Consensus 150 ~~l~~~l~g~ilVgHn~~fDl~~L~~-~~p~~~iiDT~ 186 (193)
..|.+++.+...|+|++.+|+.+|.. ......++||.
T Consensus 85 ~~L~~lL~d~~KV~h~~k~Dl~~L~~~gi~~~~~fDt~ 122 (440)
T 3cym_A 85 NDFNRAVGDAVWILHDSLQDLPGFDELGMEPQRLFDTE 122 (440)
T ss_dssp HHHHHHHTTCEEEESSHHHHHHHHHHHTCCCCEEEEHH
T ss_pred HHHHHHHCCCCEEEEcCHHHHHHHHHcCCcCCceehHH
Confidence 45777887778999999999999951 11123688984
No 44
>3q7c_A Nucleoprotein; deddh exonuclease, 3' exonuclease, hydrolase; 1.50A {Lassa virus} PDB: 3q7b_A 4fvu_A
Probab=78.09 E-value=13 Score=30.30 Aligned_cols=101 Identities=16% Similarity=0.158 Sum_probs=70.5
Q ss_pred CCCcEEEEEEeecCCCCCcEeEEEEEEEEeCCCcEEEEEEecCCC--ccccccccccCCCHHHHccCCCHHHHHHHHHHH
Q 029428 78 SLTDVVAMDCEMVGISQGNKSALGRVSLVNKWGNLIYDEFVRPLE--RVVDFRTRISGIRPRDLRKAKDFPTVQKKVAEL 155 (193)
Q Consensus 78 ~~~~~v~lD~EtTGl~~~~i~eia~V~vv~~~g~~i~~~lV~P~~--~i~~~~t~ihGIt~e~l~~a~~~~ev~~~l~~~ 155 (193)
.+..-.+||+|-.-.++ +||| +-.....-..+.|-+|.. .+-+.+.--|||.-.||.++.+ -+...|...
T Consensus 55 dP~~ttWiDIEG~p~DP---VElA---iyQP~sg~YIHcyR~P~D~K~FK~~SKySHGillkDl~~aqP--GL~S~vi~~ 126 (243)
T 3q7c_A 55 DPNAKTWMDIEGRPEDP---VEIA---LYQPSSGCYIHFFREPTDLKQFKQDAKYSHGIDVTDLFATQP--GLTSAVIDA 126 (243)
T ss_dssp CTTSCCEEEEESCTTSC---SEEE---EEETTTTEEEEEECCCSCHHHHHHHHHHTTCBCGGGGTTBCT--THHHHHHHH
T ss_pred CCCCCeEEecCCCCCCC---eEEE---EeccCCCcEEEEecCCcchhhhcccCccccceehhhhhhcCC--chHHHHHHh
Confidence 34456799999775444 5777 334445555677778875 4555666779999999999876 566777888
Q ss_pred hCCCEEEEeChHhhHHHhcccCCC--CceeecC
Q 029428 156 IEGRILVGHALHNDLKALLLTHSK--KDLRDTS 186 (193)
Q Consensus 156 l~g~ilVgHn~~fDl~~L~~~~p~--~~iiDT~ 186 (193)
|....++--.-+=|++-|--.|.| -.+||..
T Consensus 127 LP~nMVlT~QGsDDIrkLld~hGRrDiKlIDV~ 159 (243)
T 3q7c_A 127 LPRNMVITCQGSDDIRKLLESQGRKDIKLIDIA 159 (243)
T ss_dssp SCTTCEEEESSHHHHHHHHHHTTCTTSEEEECC
T ss_pred CCcCcEEEeeChHHHHHHHHhcCCccceEEEee
Confidence 876666666668888888766665 4577753
No 45
>3mwp_A Nucleoprotein; structural genomics, scottish structural PROT facility, SSPF, nuclear protein; 1.79A {Lassa virus josiah} PDB: 3mwt_A 3mx2_A* 3mx5_A* 3r3l_A 3t5q_A 3t5n_A
Probab=66.23 E-value=31 Score=31.09 Aligned_cols=102 Identities=16% Similarity=0.163 Sum_probs=71.8
Q ss_pred CCCCcEEEEEEeecCCCCCcEeEEEEEEEEeCCCcEEEEEEecCCC--ccccccccccCCCHHHHccCCCHHHHHHHHHH
Q 029428 77 FSLTDVVAMDCEMVGISQGNKSALGRVSLVNKWGNLIYDEFVRPLE--RVVDFRTRISGIRPRDLRKAKDFPTVQKKVAE 154 (193)
Q Consensus 77 ~~~~~~v~lD~EtTGl~~~~i~eia~V~vv~~~g~~i~~~lV~P~~--~i~~~~t~ihGIt~e~l~~a~~~~ev~~~l~~ 154 (193)
+.+..-.+||+|-.-.++ +||| +-.....-..+.|-+|.. .+-+.+..-|||.-.||.++.+ -+...+..
T Consensus 388 ldp~~ttWiDIEG~p~DP---VE~A---iyQP~~g~YiHcyR~P~D~K~FK~~SkysHGillkDl~~aqP--GL~S~vi~ 459 (577)
T 3mwp_A 388 LDPNAKTWMDIEGRPEDP---VEIA---LYQPSSGCYIHFFREPTDLKQFKQDAKYSHGIDVTDLFATQP--GLTSAVID 459 (577)
T ss_dssp SCTTSCEEEEEESCTTSC---SEEE---EEETTTTEEEEEECCCSCHHHHHHHHHHTTCBCGGGGGGBCT--THHHHHHH
T ss_pred CCCCCCeEEecCCCCCCC---eEEE---EeccCCCcEEEEecCCcchhhhcccCccccceehhhhhhcCC--chHHHHHH
Confidence 346677899999775444 5777 334455566677888875 4555666779999999999876 45677778
Q ss_pred HhCCCEEEEeChHhhHHHhcccCCC--CceeecC
Q 029428 155 LIEGRILVGHALHNDLKALLLTHSK--KDLRDTS 186 (193)
Q Consensus 155 ~l~g~ilVgHn~~fDl~~L~~~~p~--~~iiDT~ 186 (193)
.|....++--.-+=|++-|--.|.| ..+||..
T Consensus 460 ~LP~~mV~T~QGsdDI~kLld~hGR~DiK~iDV~ 493 (577)
T 3mwp_A 460 ALPRNMVITCQGSDDIRKLLESQGRKDIKLIDIA 493 (577)
T ss_dssp HSCTTCEEEESSHHHHHHHHHHTTCTTCEEEECC
T ss_pred hCCcCcEEEeeChHHHHHHHHhcCCccceEEEee
Confidence 8876655566668888888766665 4577753
No 46
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=47.42 E-value=8.5 Score=34.03 Aligned_cols=14 Identities=50% Similarity=0.717 Sum_probs=12.4
Q ss_pred CcEEEEEEeecCCC
Q 029428 80 TDVVAMDCEMVGIS 93 (193)
Q Consensus 80 ~~~v~lD~EtTGl~ 93 (193)
..||+||+|+||+.
T Consensus 22 ~~fVAiD~Ef~Gi~ 35 (430)
T 2a1r_A 22 ADFFAIDGEFSGIS 35 (430)
T ss_dssp CSEEEEEEEESCSC
T ss_pred CCEEEEeeeecccc
Confidence 36999999999995
No 47
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=43.58 E-value=10 Score=34.16 Aligned_cols=14 Identities=50% Similarity=0.717 Sum_probs=12.6
Q ss_pred CcEEEEEEeecCCC
Q 029428 80 TDVVAMDCEMVGIS 93 (193)
Q Consensus 80 ~~~v~lD~EtTGl~ 93 (193)
..||+||+|+||+.
T Consensus 24 ~~fvaiD~Ef~Gi~ 37 (507)
T 3d45_A 24 ADFFAIDGEFSGIS 37 (507)
T ss_dssp CSEEEEEEEESCSC
T ss_pred CCEEEEeeeccCcC
Confidence 46999999999996
No 48
>2l9a_X LAK160-P12; cationic, proline, ampiphatic, de novo protein, antimicrobia; NMR {Synthetic construct}
Probab=28.29 E-value=58 Score=16.97 Aligned_cols=18 Identities=39% Similarity=0.685 Sum_probs=14.5
Q ss_pred CCCCCChhHHHHHHHHhh
Q 029428 12 THLQLNPNWAQLQLKVKS 29 (193)
Q Consensus 12 ~~~~~~~nw~~l~~~~k~ 29 (193)
--+-+.|-|+.|.-|||.
T Consensus 6 alaklaplwkalalklkk 23 (26)
T 2l9a_X 6 ALAKLAPLWKALALKLKK 23 (26)
T ss_dssp TSSSSCTHHHHHHHHHTT
T ss_pred HHHHHhHHHHHHHHHHHh
Confidence 346688999999999983
No 49
>3dqz_A Alpha-hydroxynitrIle lyase-like protein; A/B-hydrloase fold, cyanogenesis; 2.50A {Arabidopsis thaliana} SCOP: c.69.1.0
Probab=21.52 E-value=68 Score=23.67 Aligned_cols=37 Identities=32% Similarity=0.516 Sum_probs=23.4
Q ss_pred cCCCHHHHccCCCHHHHHHHHHHHh------CCCEEEEeChHh
Q 029428 132 SGIRPRDLRKAKDFPTVQKKVAELI------EGRILVGHALHN 168 (193)
Q Consensus 132 hGIt~e~l~~a~~~~ev~~~l~~~l------~g~ilVgHn~~f 168 (193)
||-+........++.+..+.+.+++ +..+||||+..-
T Consensus 42 ~G~S~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~lvGhS~Gg 84 (258)
T 3dqz_A 42 SGIDPRPIQAVETVDEYSKPLIETLKSLPENEEVILVGFSFGG 84 (258)
T ss_dssp STTCSSCGGGCCSHHHHHHHHHHHHHTSCTTCCEEEEEETTHH
T ss_pred CcCCCCCCCccccHHHhHHHHHHHHHHhcccCceEEEEeChhH
Confidence 4444332333457777777777777 345999999544
Done!