BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029429
         (193 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q55DW4|ABCG1_DICDI ABC transporter G family member 1 OS=Dictyostelium discoideum
           GN=abcG1 PE=3 SV=1
          Length = 793

 Score = 31.2 bits (69), Expect = 4.5,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 41  YAVLQSWVSKKFMTGCV-VLFPVAVTFLVTWWFIEFVDSFFS 81
           Y  L  +++K FM  C+ VL P+    +V W   + VD F+S
Sbjct: 599 YDTLPFFLAKSFMDACIAVLLPMVTATIVYWMTNQRVDPFYS 640


>sp|Q1MRV8|SYT_LAWIP Threonine--tRNA ligase OS=Lawsonia intracellularis (strain
           PHE/MN1-00) GN=thrS PE=3 SV=1
          Length = 642

 Score = 30.0 bits (66), Expect = 8.8,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 41/94 (43%), Gaps = 13/94 (13%)

Query: 105 FVGVFASSWLGATVFWLGEWFIKRL-------PFMKHIYSASKQISAAISPD--QNTSAF 155
           F+G+    + GA   WL    +K L       PF KH+YS  + +   +  D       F
Sbjct: 517 FIGILTEHYAGAFPTWLTPIQVKILTVTDAQTPFAKHVYSQLQDVGIRVGLDIRNEKLGF 576

Query: 156 KEVAIIRHPRLGEYAFGFITSSVVLQVDTLPVQV 189
           K    IR  +L +  +  +     L+++++ V++
Sbjct: 577 K----IREAQLAKIPYILVIGQKELELESVNVRL 606


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.325    0.137    0.435 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,946,071
Number of Sequences: 539616
Number of extensions: 2432598
Number of successful extensions: 9991
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 9986
Number of HSP's gapped (non-prelim): 23
length of query: 193
length of database: 191,569,459
effective HSP length: 111
effective length of query: 82
effective length of database: 131,672,083
effective search space: 10797110806
effective search space used: 10797110806
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.9 bits)