Query 029429
Match_columns 193
No_of_seqs 110 out of 594
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 21:01:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029429.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029429hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yew_B E1 envelope glycoprotei 57.4 10 0.00035 34.2 4.3 56 16-75 369-424 (427)
2 2onk_C Molybdate/tungstate ABC 51.3 57 0.0019 26.5 7.8 43 94-136 83-127 (284)
3 3d31_C Sulfate/molybdate ABC t 41.5 1.4E+02 0.0048 24.2 9.0 41 94-134 93-135 (295)
4 3j0f_E E1 envelope glycoprotei 40.6 30 0.001 31.3 4.6 56 17-73 379-434 (439)
5 2rdd_B UPF0092 membrane protei 30.1 26 0.00089 20.8 1.7 18 55-72 2-19 (37)
6 3j0c_A E1 envelope glycoprotei 30.0 29 0.001 31.3 2.8 58 17-75 379-436 (442)
7 3tx3_A Uncharacterized protein 29.0 2.4E+02 0.0083 23.2 10.8 12 58-69 33-44 (249)
8 2bf9_A Pancreatic hormone; tur 20.6 1.5E+02 0.005 17.8 3.8 27 26-52 2-28 (36)
9 3qf4_B Uncharacterized ABC tra 19.0 5.2E+02 0.018 23.4 11.1 9 38-46 22-30 (598)
10 1q90_G Cytochrome B6F complex 18.7 1.3E+02 0.0045 18.1 3.3 20 94-113 7-26 (37)
No 1
>2yew_B E1 envelope glycoprotein; alphavirus, molecular dynamics; 5.00A {Barmah forest virus}
Probab=57.39 E-value=10 Score=34.16 Aligned_cols=56 Identities=13% Similarity=0.153 Sum_probs=45.9
Q ss_pred CCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029429 16 LTPHDPEDVPKSPPHSPNSSTRKACYAVLQSWVSKKFMTGCVVLFPVAVTFLVTWWFIEF 75 (193)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~fl~GLlvlLPi~iTi~Il~~l~~~ 75 (193)
+.=|||.| +-.-|+.-+++ ..+..++-|+|+. +++|.-.++=+++.++++...+.+
T Consensus 369 a~C~PPkD-IV~~p~~h~~~-~~~vS~Taw~W~~--l~gG~~~~~~i~~~i~~~v~~~~~ 424 (427)
T 2yew_B 369 GKCEPPKD-IVPYAAKNDAE-FPSISTTAWQWLA--TTSGPLTILVVAIIVVVVVSIVVC 424 (427)
T ss_dssp CCCCCCSS-CCCCCCCSSCC-SSCSSHHHHHHHG--GGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCchh-hcCCccccCCc-cccchhhhHHHHH--HhcCchHHHHHHHHHHHHhhheee
Confidence 45688888 77788888888 8888999999988 899999888888888887766544
No 2
>2onk_C Molybdate/tungstate ABC transporter, permease protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: f.58.1.1
Probab=51.32 E-value=57 Score=26.51 Aligned_cols=43 Identities=12% Similarity=0.000 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHh--hhhhHHHHHHHHHhhhhhhhhHHH
Q 029429 94 LGFLTSILFIFFVGVFASS--WLGATVFWLGEWFIKRLPFMKHIY 136 (193)
Q Consensus 94 lgl~~~l~~i~~iG~la~~--~ig~~ll~~~e~ll~rIP~V~sIY 136 (193)
.+.++.+++-+.+|++..+ ..++++++..=.+..-+|.+-..+
T Consensus 83 ~~~~l~~~lg~~~a~~l~~~~~~~~~~~~~~~~~~~~iP~~v~~~ 127 (284)
T 2onk_C 83 ISTLIAVIFGTPLAYILARKSFPGKSVVEGIVDLPVVIPHTVAGI 127 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCSSHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555556666543 355667766666666788754443
No 3
>3d31_C Sulfate/molybdate ABC transporter, permease protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: f.58.1.1
Probab=41.53 E-value=1.4e+02 Score=24.21 Aligned_cols=41 Identities=15% Similarity=0.010 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHh--hhhhHHHHHHHHHhhhhhhhhH
Q 029429 94 LGFLTSILFIFFVGVFASS--WLGATVFWLGEWFIKRLPFMKH 134 (193)
Q Consensus 94 lgl~~~l~~i~~iG~la~~--~ig~~ll~~~e~ll~rIP~V~s 134 (193)
.+.++.+++-+.+|++..+ ..++++++.+=.+..-+|.+-.
T Consensus 93 ~~~~l~~~lg~~~a~~l~~~~~~~~~~~~~~~~~~~~iP~~v~ 135 (295)
T 3d31_C 93 LATLLALLLGAPTGYILARFDFPGKRLVESIIDVPVVVPHTVA 135 (295)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHGGGTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHH
Confidence 3344444444556666543 3566666666666667887543
No 4
>3j0f_E E1 envelope glycoprotein; alphavirus, virus assembly; 7.00A {Sindbis virus} PDB: 1ld4_M 1z8y_I
Probab=40.59 E-value=30 Score=31.26 Aligned_cols=56 Identities=18% Similarity=0.281 Sum_probs=44.7
Q ss_pred CCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029429 17 TPHDPEDVPKSPPHSPNSSTRKACYAVLQSWVSKKFMTGCVVLFPVAVTFLVTWWFI 73 (193)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~fl~GLlvlLPi~iTi~Il~~l~ 73 (193)
.=+||.|-+-.-|+.-+++...+..++-|+|+.+ +++|.-.++=+++.++++...+
T Consensus 379 ~C~PPkDHIV~~p~~h~~~~~~~vS~Taw~W~~~-l~gG~~~~~~i~~~i~~~v~~~ 434 (439)
T 3j0f_E 379 ECKPPADHIVSTPHKNDQEFQAAISKTSWSWLFA-LFGGASSLLIIGLMIFACSMML 434 (439)
T ss_pred CCcCCcccccCCccccccccccccchhHHHHHHH-HhcccHHHHHHHHHHHHHhhhe
Confidence 4578888888899999999999999999999765 6777777777777766665443
No 5
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=30.08 E-value=26 Score=20.77 Aligned_cols=18 Identities=11% Similarity=0.238 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 029429 55 GCVVLFPVAVTFLVTWWF 72 (193)
Q Consensus 55 GLlvlLPi~iTi~Il~~l 72 (193)
|+..++|+++.+.++||+
T Consensus 2 ~~~~~l~~v~~~~ifYFl 19 (37)
T 2rdd_B 2 PMSLILMLVVFGLIFYFM 19 (37)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 344566666665555554
No 6
>3j0c_A E1 envelope glycoprotein; alphavirus, bioweapon; 4.80A {Venezuelan equine encephalitis virus}
Probab=30.04 E-value=29 Score=31.34 Aligned_cols=58 Identities=14% Similarity=0.260 Sum_probs=46.1
Q ss_pred CCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029429 17 TPHDPEDVPKSPPHSPNSSTRKACYAVLQSWVSKKFMTGCVVLFPVAVTFLVTWWFIEF 75 (193)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~fl~GLlvlLPi~iTi~Il~~l~~~ 75 (193)
.=+||.|-+-..|+.-+++...+..++-|+|+.+ +++|.-.++=+++.++++...+.+
T Consensus 379 ~C~PPkDHIV~~p~~h~~~~~~~vS~Taw~W~~~-l~GG~~~~~~i~~~~~~~v~~~~~ 436 (442)
T 3j0c_A 379 DCHPPKDHIVTHPQYHAQTFTAAVSKTAWTWLTS-LLGGSAVIIIIGLVLATIVAMYVL 436 (442)
T ss_dssp CCBCCSCCEESSCCCCCCCCSCCCCHHHHHHHHT-TSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccCCcccccCCcccccccccccchhhHHHHHHH-HhcccHHHHHHHHHHHHHHhhhhh
Confidence 3578888888899999999999999999999655 677877777777777776665544
No 7
>3tx3_A Uncharacterized protein involved in cysteine BIOS; structural genomics, PSI-biology, NEW YORK consortium on MEM protein structure, nycomps; HET: LDA; 2.30A {Idiomarina loihiensis}
Probab=29.03 E-value=2.4e+02 Score=23.18 Aligned_cols=12 Identities=17% Similarity=0.548 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHH
Q 029429 58 VLFPVAVTFLVT 69 (193)
Q Consensus 58 vlLPi~iTi~Il 69 (193)
+++|+.+++.+.
T Consensus 33 vl~Pllinl~L~ 44 (249)
T 3tx3_A 33 VVVPILTNLILF 44 (249)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 455666665543
No 8
>2bf9_A Pancreatic hormone; turkey, pancreas, polypeptide, atomic resolution, anisotropic refinement; HET: TYC; 0.99A {Meleagris gallopavo} SCOP: j.6.1.1 PDB: 1ppt_A 2k76_A 2h3s_B* 2h3t_B* 2h4b_C*
Probab=20.64 E-value=1.5e+02 Score=17.84 Aligned_cols=27 Identities=11% Similarity=0.091 Sum_probs=17.8
Q ss_pred CCCCCCCCCccHHHHHHHHHHHHHHHH
Q 029429 26 KSPPHSPNSSTRKACYAVLQSWVSKKF 52 (193)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~i~~~f 52 (193)
|+-|++|...+-++=+++....+++|+
T Consensus 2 P~kP~~PG~dA~~Eela~Y~~~LrhYi 28 (36)
T 2bf9_A 2 PSQPTYPGDDAPVEDLIRFYNDLQQYL 28 (36)
T ss_dssp CCCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 344566666666677777777777764
No 9
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=19.02 E-value=5.2e+02 Score=23.41 Aligned_cols=9 Identities=22% Similarity=0.084 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q 029429 38 KACYAVLQS 46 (193)
Q Consensus 38 ~~~~~~~~~ 46 (193)
...+.++++
T Consensus 22 ~~~~~~l~~ 30 (598)
T 3qf4_B 22 TATLRRLLG 30 (598)
T ss_dssp HHHHHHHGG
T ss_pred HHHHHHHHH
Confidence 334444443
No 10
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=18.68 E-value=1.3e+02 Score=18.15 Aligned_cols=20 Identities=15% Similarity=0.534 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 029429 94 LGFLTSILFIFFVGVFASSW 113 (193)
Q Consensus 94 lgl~~~l~~i~~iG~la~~~ 113 (193)
.|+++.++-+.++|+++..+
T Consensus 7 ~GIVlGlipvtlaGLfv~Ay 26 (37)
T 1q90_G 7 CGIVLGLVPVTIAGLFVTAY 26 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHhhHHHHHHHHHHHHH
Confidence 57777788888889887654
Done!