Query 029429
Match_columns 193
No_of_seqs 110 out of 594
Neff 5.5
Searched_HMMs 13730
Date Mon Mar 25 21:01:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029429.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029429hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3buxb3 d.93.1.1 (B:264-351) C 40.5 9.6 0.0007 25.5 2.8 48 136-187 11-59 (88)
2 d1otsa_ f.20.1.1 (A:) Clc chlo 21.9 1.7E+02 0.012 23.5 8.4 59 55-113 23-84 (444)
3 d1pw4a_ f.38.1.1 (A:) Glycerol 21.5 1.5E+02 0.011 21.9 10.4 12 101-112 74-85 (447)
4 d2axti1 f.23.37.1 (I:1-35) Pho 19.0 67 0.0049 17.7 3.4 16 62-77 10-25 (35)
5 d1q90g_ f.23.26.1 (G:) PetG su 18.5 68 0.005 17.0 3.3 20 94-113 7-26 (30)
6 d1xmaa_ a.4.5.61 (A:) Predicte 15.6 1E+02 0.0072 20.0 4.5 43 103-145 10-55 (103)
7 d2axtl1 f.23.31.1 (L:1-37) Pho 11.6 1.3E+02 0.0092 16.6 3.3 17 98-114 19-35 (37)
8 d1qnta2 c.55.7.1 (A:6-91) O6-a 10.2 1.4E+02 0.01 19.6 3.7 30 24-53 37-66 (86)
9 d1xmec1 f.23.9.1 (C:2-34) Bact 10.1 1.4E+02 0.01 15.9 3.0 6 103-108 20-25 (33)
10 d2vv5a3 f.34.1.1 (A:27-112) Me 9.9 1.9E+02 0.014 17.5 6.0 16 103-118 11-26 (86)
No 1
>d3buxb3 d.93.1.1 (B:264-351) Cbl {Human (Homo sapiens) [TaxId: 9606]}
Probab=40.52 E-value=9.6 Score=25.46 Aligned_cols=48 Identities=21% Similarity=0.360 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhCCCCCCccccceEEEEcCCCCeeEEEEEeccc-cccCCCCce
Q 029429 136 YSASKQISAAISPDQNTSAFKEVAIIRHPRLGEYAFGFITSSV-VLQVDTLPV 187 (193)
Q Consensus 136 YssiKqi~~~f~g~~~~~~f~~VVLVe~P~~g~~~iGFvT~~~-~~~~~~g~~ 187 (193)
|.-+|.-.+.+..+.. ++ +-....-+-|-|+||+||.+- ..|+..-++
T Consensus 11 YDevk~rL~~~~~kPG--SY--iFRlSCTrlGQWAIGyvt~dg~IlQTIp~nk 59 (88)
T d3buxb3 11 YDEVKARLQKFIHKPG--SY--IFRLSCTRLGQWAIGYVTADGNILQTIPHNK 59 (88)
T ss_dssp HHHHHHHHGGGTTSTT--EE--EEEECSSSTTSEEEEEECTTSCEEEECCSSC
T ss_pred HHHHHHHHHHHhcCCC--ce--EEeeccccccceeeeeeccCCceeeeccCcc
Confidence 7778888888875432 22 223335588999999999985 335444433
No 2
>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli [TaxId: 562]}
Probab=21.93 E-value=1.7e+02 Score=23.54 Aligned_cols=59 Identities=12% Similarity=0.091 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh---hhhHHHHHHHHHHHHHHHHHHhh
Q 029429 55 GCVVLFPVAVTFLVTWWFIEFVDSFFSPIYARLGVE---IFGLGFLTSILFIFFVGVFASSW 113 (193)
Q Consensus 55 GLlvlLPi~iTi~Il~~l~~~v~~~~~pl~~~l~~~---~pglgl~~~l~~i~~iG~la~~~ 113 (193)
++++=+-..++.+++.+.++++.............+ .....++...++..+.+++.+++
T Consensus 23 a~liGi~~gl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 84 (444)
T d1otsa_ 23 AAVVGTLVGLAAVAFDKGVAWLQNQRMGALVHTADNYPLLLTVAFLCSAVLAMFGYFLVRKY 84 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444455556666666666666543333221111 12233333444455556665543
No 3
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=21.48 E-value=1.5e+02 Score=21.94 Aligned_cols=12 Identities=17% Similarity=0.384 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHh
Q 029429 101 LFIFFVGVFASS 112 (193)
Q Consensus 101 ~~i~~iG~la~~ 112 (193)
+..++.|.++.+
T Consensus 74 ~~~~~~G~l~Dr 85 (447)
T d1pw4a_ 74 FSKFIMGSVSDR 85 (447)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334455666554
No 4
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=19.03 E-value=67 Score=17.68 Aligned_cols=16 Identities=31% Similarity=0.681 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 029429 62 VAVTFLVTWWFIEFVD 77 (193)
Q Consensus 62 i~iTi~Il~~l~~~v~ 77 (193)
.++++|+..|+|+++.
T Consensus 10 ~vV~fFv~lFiFGFLS 25 (35)
T d2axti1 10 IVVTFFVLLFVFGFLS 25 (35)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHhhcc
Confidence 3444555555555543
No 5
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=18.53 E-value=68 Score=16.99 Aligned_cols=20 Identities=15% Similarity=0.534 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 029429 94 LGFLTSILFIFFVGVFASSW 113 (193)
Q Consensus 94 lgl~~~l~~i~~iG~la~~~ 113 (193)
.|+++.++=+.+.|+++..+
T Consensus 7 ~GivlGlipiTl~Glfv~Ay 26 (30)
T d1q90g_ 7 CGIVLGLVPVTIAGLFVTAY 26 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHhhHHHHHHHHHHHHH
Confidence 46666777788888887654
No 6
>d1xmaa_ a.4.5.61 (A:) Predicted transcriptional regulator {Clostridium thermocellum [TaxId: 1515]}
Probab=15.65 E-value=1e+02 Score=19.98 Aligned_cols=43 Identities=12% Similarity=0.040 Sum_probs=28.6
Q ss_pred HHHHHHHHH-hhhhhHHHHHHHHHhhhh--hhhhHHHHHHHHHHHH
Q 029429 103 IFFVGVFAS-SWLGATVFWLGEWFIKRL--PFMKHIYSASKQISAA 145 (193)
Q Consensus 103 i~~iG~la~-~~ig~~ll~~~e~ll~rI--P~V~sIYssiKqi~~~ 145 (193)
.+++|++.. -.-|--+.+.++...... +--++||.++|++.+.
T Consensus 10 ~~IL~lL~~~~~~GYei~~~l~~~~~~~~~is~gslY~~L~rLe~~ 55 (103)
T d1xmaa_ 10 TIILSLLIEGDSYGYEISKNIRIKTDELYVIKETTLYSAFARLEKN 55 (103)
T ss_dssp HHHHHHHHHCCEEHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhCCccHHHHHHHHHHHcCCeecCCCCchHHHHHHHHHC
Confidence 344555654 356667777777665432 3449999999998764
No 7
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=11.58 E-value=1.3e+02 Score=16.61 Aligned_cols=17 Identities=24% Similarity=0.555 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHhhh
Q 029429 98 TSILFIFFVGVFASSWL 114 (193)
Q Consensus 98 ~~l~~i~~iG~la~~~i 114 (193)
..++++|+.|.+.++++
T Consensus 19 ~GlLlifvl~vLFssYf 35 (37)
T d2axtl1 19 LGLLLILVLALLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34556777777776653
No 8
>d1qnta2 c.55.7.1 (A:6-91) O6-alkylguanine-DNA alkyltransferase {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.15 E-value=1.4e+02 Score=19.55 Aligned_cols=30 Identities=10% Similarity=0.112 Sum_probs=19.4
Q ss_pred CCCCCCCCCCCccHHHHHHHHHHHHHHHHH
Q 029429 24 VPKSPPHSPNSSTRKACYAVLQSWVSKKFM 53 (193)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~fl 53 (193)
-++++|.++.--...+-..+.-.|++.||-
T Consensus 37 ~~~e~~a~~~~~~~~epL~qC~~WL~aYF~ 66 (86)
T d1qnta2 37 DAVEVPAPAAVLGGPEPLMQCTAWLNAYFH 66 (86)
T ss_dssp CCCSSCCCCSSCCCSHHHHHHHHHHHHHHH
T ss_pred ccccCCCCHHHhcCchhHHHHHHHHHHHcc
Confidence 334444444444455778888899999984
No 9
>d1xmec1 f.23.9.1 (C:2-34) Bacterial ba3 type cytochrome c oxidase subunit IIa {Thermus thermophilus [TaxId: 274]}
Probab=10.07 E-value=1.4e+02 Score=15.90 Aligned_cols=6 Identities=50% Similarity=1.414 Sum_probs=2.3
Q ss_pred HHHHHH
Q 029429 103 IFFVGV 108 (193)
Q Consensus 103 i~~iG~ 108 (193)
+|..|.
T Consensus 20 vfw~gv 25 (33)
T d1xmec1 20 VFWLGV 25 (33)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 10
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}
Probab=9.95 E-value=1.9e+02 Score=17.53 Aligned_cols=16 Identities=25% Similarity=0.517 Sum_probs=7.9
Q ss_pred HHHHHHHHHhhhhhHH
Q 029429 103 IFFVGVFASSWLGATV 118 (193)
Q Consensus 103 i~~iG~la~~~ig~~l 118 (193)
++.+|+...+++.+.+
T Consensus 11 il~i~~~i~~~i~~~~ 26 (86)
T d2vv5a3 11 IIIVGLIIARMISNAV 26 (86)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4445665555444433
Done!