BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029430
(193 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 8/95 (8%)
Query: 99 VSLKISLLGDCQIGKTSFV-KYVGNE----QERSLQMAGLNLINKTLMVQGARIAFSIWD 153
++ K+ LLGD GK+S V ++V ++ QE ++ G ++TL V A + F IWD
Sbjct: 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTI---GAAFFSQTLAVNDATVKFEIWD 67
Query: 154 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNR 188
G R P+ + A A + +FD+T++ + R
Sbjct: 68 TAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFER 102
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 100 SLKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 157
S K+ LLG+ +GKTS V +Y N+ ++ + G + + K L + G R+ +IWD G
Sbjct: 6 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQ 65
Query: 158 SRSFDHVPIACKDAVAILFMFDLT 181
R PI +D+ + ++D+T
Sbjct: 66 ERFHALGPIYYRDSNGAILVYDIT 89
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
Query: 89 SSGYDTDSDLVSLKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGAR 146
S Y D DL+ KI L+GD +GK++ + ++ NE S G+ +TL ++G R
Sbjct: 3 SEDYGYDYDLL-FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKR 61
Query: 147 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNRFDH 191
I IWD G R + AV L ++D++ + +H
Sbjct: 62 IKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNH 106
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Query: 101 LKISLLGDCQIGKTSFVK--YVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
K+ L+GD +GKT V+ G ER G++ KTL +QG R+ IWD G
Sbjct: 30 FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 89
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNRFDH 191
R + A + +D+T R + H
Sbjct: 90 RFRTITQSYYRSANGAILAYDITKRSSFLSVPH 122
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 100 SLKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 157
S K+ LLG+ +GKTS V +Y N+ ++ + + + K L + G R+ +IWD G
Sbjct: 6 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQ 65
Query: 158 SRSFDHVPIACKDAVAILFMFDLT 181
R PI +D+ + ++D+T
Sbjct: 66 ERFHALGPIYYRDSNGAILVYDIT 89
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 100 SLKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 157
S K+ LLG+ +GKTS V +Y N+ ++ + + + K L + G R+ +IWD G
Sbjct: 20 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQ 79
Query: 158 SRSFDHVPIACKDAVAILFMFDLT 181
R PI +D+ + ++D+T
Sbjct: 80 ERFHALGPIYYRDSNGAILVYDIT 103
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 53/96 (55%), Gaps = 2/96 (2%)
Query: 89 SSGYDTDSDLVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMA-GLNLINKTLMVQGAR 146
S+G D + L K+ LG+ +GKTS + +++ + + + Q G++ ++KT+ ++
Sbjct: 2 STGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT 61
Query: 147 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTS 182
I +WD G R +P +D+ A + ++D+T+
Sbjct: 62 IRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITN 97
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 96 SDLVSLKISLLGDCQIGKTSFV-KYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWD 153
S + K+ LLG+ +GK+S V ++V G E G + +++ + + F IWD
Sbjct: 4 SKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWD 63
Query: 154 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNR 188
G R P+ + A A + ++D+T++ T R
Sbjct: 64 TAGQERYHSLAPMYYRGAQAAIVVYDITNQETFAR 98
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 8/93 (8%)
Query: 101 LKISLLGDCQIGKTSFV-KYVGNE----QERSLQMAGLNLINKTLMVQGARIAFSIWDVG 155
K+ LLG+ +GK+S V ++V + QE ++Q A + +T+ + + F IWD
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAA---FLTQTVCLDDTTVKFEIWDTA 62
Query: 156 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNR 188
G R P+ + A A + ++D+T+ T R
Sbjct: 63 GQERYHSLAPMYYRGAQAAIVVYDITNTDTFAR 95
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 101 LKISLLGDCQIGKTSFV-KYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
K+ LLG+ +GK+S V ++V G E G + +T+ + + F IWD G
Sbjct: 4 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 63
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNR 188
R P+ + A A + ++D+T+ T R
Sbjct: 64 RYHSLAPMYYRGAQAAIVVYDITNTDTFAR 93
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
Query: 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVG 155
L +LKI ++G+ +GK+S + ++ + + L G++ KT+ V G + +IWD
Sbjct: 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTA 72
Query: 156 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNRFDH 191
G R P + A ++ ++D+T R T + D+
Sbjct: 73 GQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDN 108
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 101 LKISLLGDCQIGKTSFV-KYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
K+ LLG+ ++GK+S V ++V G E G + +T+ + + F IWD G
Sbjct: 7 FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNR 188
R P+ + A A + ++D+T+ + R
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFAR 96
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 96 SDLVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWD 153
S L K+ LG+ +GKTS + +++ + + + Q G++ ++KT+ ++ I +WD
Sbjct: 2 SPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWD 61
Query: 154 VGGDSRSFDHVPIACKDAVAILFMFDLTS 182
G R +P +D+ A + ++D+T+
Sbjct: 62 TAGQERFRSLIPSYIRDSAAAVVVYDITN 90
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 2/96 (2%)
Query: 98 LVSLKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVG 155
+ S+K+ LLG+ +GK+S V ++V N+ E G + + + + + F IWD
Sbjct: 1 VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTA 60
Query: 156 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNRFDH 191
G R P ++A A L ++D+T + + H
Sbjct: 61 GQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARH 96
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 101 LKISLLGDCQIGKTSFV-KYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
K+ LLG+ ++GK+S V ++V G E G + +T+ + + F IWD G
Sbjct: 7 FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNR 188
R P+ + A A + ++D+T+ + R
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFAR 96
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 101 LKISLLGDCQIGKTSFV-KYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
K+ LLG+ ++GK+S V ++V G E G + +T+ + + F IWD G
Sbjct: 7 FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNR 188
R P+ + A A + ++D+T+ + R
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFAR 96
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 99 VSLKISLLGDCQIGKTSFVKYVGNEQERS---LQMAGLNLINKTLMVQGARIAFSIWDVG 155
V+ K+ L+GD +GKT + + + + G++ NK L V G ++ +WD
Sbjct: 9 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTA 68
Query: 156 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLN 187
G R +DA A+L ++D+T++ + +
Sbjct: 69 GQERFRSVTHAYYRDAHALLLLYDVTNKASFD 100
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVG 155
L LK+ LLGD +GK+S V ++V + + ++ G + + KT+ Q F IWD
Sbjct: 3 LRELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTA 62
Query: 156 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLN 187
G R P+ + + A + ++D+T T +
Sbjct: 63 GQERFRALAPMYYRGSAAAIIVYDITKEETFS 94
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 56/104 (53%), Gaps = 3/104 (2%)
Query: 87 TFSSGYDTDSDLVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMA-GLNLINKTLMVQG 144
T SSG D + L K+ LG+ +GKTS + +++ + + + Q G++ ++KT+ ++
Sbjct: 2 TMSSG-DFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLED 60
Query: 145 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNR 188
+ +WD G R +P +D+ + ++D+T+ + ++
Sbjct: 61 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQ 104
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 101 LKISLLGDCQIGKTSFV-KYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
K+ LLG+ +GK+S V ++V G E G + +T+ + + F IWD G
Sbjct: 7 FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNR 188
R P+ + A A + ++D+T+ + R
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFAR 96
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 101 LKISLLGDCQIGKTSFV-KYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
K+ LLG+ +GK+S V ++V G E G + +T+ + + F IWD G
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNR 188
R P+ + A A + ++D+T+ T R
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNTDTFAR 95
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 101 LKISLLGDCQIGKTSFV-KYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
K+ LLG+ +GK+S V ++V G E G + +T+ + + F IWD G
Sbjct: 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNR 188
R P+ + A A + ++D+T+ + R
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFAR 96
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 101 LKISLLGDCQIGKTSFV-KYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
K+ LLG+ +GK+S V ++V G E G + +T+ + + F IWD G
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNR 188
R P+ + A A + ++D+T+ + R
Sbjct: 68 RYHSLAPMYYRGAQAAIVVYDITNEESFAR 97
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 89 SSGYDTDSDLVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMA-GLNLINKTLMVQGAR 146
S+G D + L K+ LG+ +GKTS + +++ + + + Q G++ ++KT+ ++
Sbjct: 5 STGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT 64
Query: 147 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTS 182
+ +WD G R +P +D+ + ++D+T+
Sbjct: 65 VRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITN 100
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 102 KISLLGDCQIGKTSFV-KYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVGGDSR 159
K+ LG+ +GKTS + ++ + + + Q G++ ++KTL + + +WD G R
Sbjct: 3 KLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQER 62
Query: 160 SFDHVPIACKDAVAILFMFDLTSRCTL 186
+P +D+ A + ++D+T+R +
Sbjct: 63 FRSLIPSYIRDSAAAIVVYDITNRQSF 89
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 100 SLKISLLGDCQIGKTSFV-KYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVGGD 157
+ KI L GD +GK+SF+ + NE ++ G++ KTL+V G R +WD G
Sbjct: 28 AYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQ 87
Query: 158 SRSFDHVPIACKDAVAILFMFDLT 181
R + A +L ++D+T
Sbjct: 88 ERFRSIAKSYFRKADGVLLLYDVT 111
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 101 LKISLLGDCQIGKTSFV-KYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
K+ LLG+ +GK+S V ++V G E G + +T+ + + F IWD G
Sbjct: 7 FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNR 188
R P+ + A A + ++D+T+ + R
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFAR 96
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Query: 101 LKISLLGDCQIGKTSFV-KYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
K+ LLG+ +GK+S V ++V G E G + +T+ + + F IWD G
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNR 188
R P + A A + ++D+T+ + R
Sbjct: 68 RYHSLAPXYYRGAQAAIVVYDITNEESFAR 97
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 101 LKISLLGDCQIGKTSFV-KYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
K+ LLG+ +GK+S V ++V G E G + +T+ + + F IWD G
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNR 188
R P+ + A A + ++D+T+ + R
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNEESFAR 95
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 49/93 (52%), Gaps = 5/93 (5%)
Query: 101 LKISLLGDCQIGKTSFV-KYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVGGDS 158
K+ LG+ +GKTS + +++ + + + Q G++ ++KT+ ++ + +WD G
Sbjct: 3 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 62
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNRFDH 191
R +P +D+ + ++D+T+ LN F
Sbjct: 63 RFRSLIPSYIRDSTVAVVVYDITN---LNSFQQ 92
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 2/94 (2%)
Query: 96 SDLVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWD 153
S L LK+ LLGD +GK+S + ++V + + ++ G + + KT+ Q F IWD
Sbjct: 2 SALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWD 61
Query: 154 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLN 187
G R P+ + + A + ++D+T T +
Sbjct: 62 TAGLERFRALAPMYYRGSAAAIIVYDITKEETFS 95
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 101 LKISLLGDCQIGKTSFV-KYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
KI LLGD +GK+S + +YV N+ + L G+ +NK L V G + IWD G
Sbjct: 12 FKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 71
Query: 159 R 159
R
Sbjct: 72 R 72
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 101 LKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
LK+ LLGD +GK+S + +YV N+ ++ G+ +N+ L V G + IWD G
Sbjct: 8 LKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQE 67
Query: 159 R 159
R
Sbjct: 68 R 68
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 101 LKISLLGDCQIGKTSFV-KYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
K+ LLGD +GK+S + +YV N+ + L G+ +NK L V G + IWD G
Sbjct: 8 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 67
Query: 159 R 159
R
Sbjct: 68 R 68
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 101 LKISLLGDCQIGKTSFV-KYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVGGDS 158
K+ LG+ +GKTS + +++ + + + Q G++ ++KT+ ++ + +WD G
Sbjct: 2 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 61
Query: 159 RSFDHVPIACKDAVAILFMFDLTS 182
R +P +D+ + ++D+T+
Sbjct: 62 RFRSLIPSYIRDSTVAVVVYDITN 85
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 101 LKISLLGDCQIGKTSFV-KYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
K+ LLGD +GK+S + +YV N+ + L G+ +NK L V G + IWD G
Sbjct: 10 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 69
Query: 159 R 159
R
Sbjct: 70 R 70
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 13/103 (12%)
Query: 93 DTDSDLVSLKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLM--VQGA--- 145
D D D + +K+ LGD +GKT+F+ +Y N+ + + G++ K ++ QGA
Sbjct: 5 DGDYDYL-IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGA 63
Query: 146 -----RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR 183
++ +WD G R +DA+ L MFDLTS+
Sbjct: 64 SGKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQ 106
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 96 SDLVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWD 153
S + LK+ LLGD +GK+S V ++V + + ++ G + + KT+ F IWD
Sbjct: 19 SAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWD 78
Query: 154 VGGDSRSFDHVPIACKDAVAILFMFDLTSR 183
G R P+ + + A + ++D+T +
Sbjct: 79 TAGQERFHSLAPMYYRGSAAAVIVYDITKQ 108
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 99 VSLKISLLGDCQIGKTSFVKYVGN---EQERSLQMAGLNLINKTLMVQGARIAFSIWDVG 155
++ KI L+GD +GKT+++ V + E+ + + +N L QG I F++WD
Sbjct: 10 LTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTA 69
Query: 156 GDSRSFDHVPIACKDAVAILFMFDLTSRCT 185
G + + A + FD+TSR T
Sbjct: 70 GQEKKAVLKDVYYIGASGAILFFDVTSRIT 99
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 13/103 (12%)
Query: 93 DTDSDLVSLKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLM--VQGA--- 145
D D D + +K+ LGD +GKT+F+ +Y N+ + + G++ K ++ QGA
Sbjct: 5 DGDYDYL-IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGA 63
Query: 146 -----RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR 183
++ +WD G R +DA+ L MFDLTS+
Sbjct: 64 SGKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQ 106
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 4/95 (4%)
Query: 99 VSLKISLLGDCQIGKTSFVKYVGNEQERSLQMA--GLNLINKTLMVQGARIAFSIWDVGG 156
V LK+ +LGD +GKTS + N++ + A G + + K +MV + IWD G
Sbjct: 7 VLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAG 66
Query: 157 DSRSFDHVPIA-CKDAVAILFMFDLTSRCTLNRFD 190
R F + +A + A + +FD+T+ T D
Sbjct: 67 QER-FQSLGVAFYRGADCCVLVFDVTAPNTFKTLD 100
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 101 LKISLLGDCQIGKTSFV-KYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
KI ++G+ +GKTSF+ +Y + + G++ KT+ RI IWD G
Sbjct: 6 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQE 65
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLN 187
R + A+ + M+D+T+ + N
Sbjct: 66 RYRTITTAYYRGAMGFILMYDITNEESFN 94
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 4/95 (4%)
Query: 99 VSLKISLLGDCQIGKTSFVKYVGNEQERSLQMA--GLNLINKTLMVQGARIAFSIWDVGG 156
V LK+ +LGD +GKTS + N++ + A G + + K +MV + IWD G
Sbjct: 7 VLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAG 66
Query: 157 DSRSFDHVPIA-CKDAVAILFMFDLTSRCTLNRFD 190
R F + +A + A + +FD+T+ T D
Sbjct: 67 QER-FQSLGVAFYRGADCCVLVFDVTAPNTFKTLD 100
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 12/94 (12%)
Query: 99 VSLKISLLGDCQIGKTSFVK--YVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 156
V K+ L+GD GKT+FVK G +++ + G+ + I F++WD G
Sbjct: 14 VQFKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 73
Query: 157 DSRSFDHVPIACKDAVAI-----LFMFDLTSRCT 185
+ +D I + MFD+TSR T
Sbjct: 74 QEKFG-----GLRDGYYIQAQCAIIMFDVTSRVT 102
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 4/95 (4%)
Query: 99 VSLKISLLGDCQIGKTSFVKYVGNEQERSLQMA--GLNLINKTLMVQGARIAFSIWDVGG 156
V LK+ +LGD +GKTS + N++ + A G + + K +MV + IWD G
Sbjct: 7 VLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAG 66
Query: 157 DSRSFDHVPIA-CKDAVAILFMFDLTSRCTLNRFD 190
R F + +A + A + +FD+T+ T D
Sbjct: 67 QER-FQSLGVAFYRGADCCVLVFDVTAPNTFKTLD 100
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVG 155
L K+ LG+ +GKTS + +++ + + + Q G++ ++KT+ ++ + +WD
Sbjct: 4 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 63
Query: 156 GDSRSFDHVPIACKDAVAILFMFDLTS 182
G R +P +D+ + ++D+T+
Sbjct: 64 GLERFRSLIPSYIRDSTVAVVVYDITN 90
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 12/94 (12%)
Query: 99 VSLKISLLGDCQIGKTSFVK--YVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 156
V K+ L+GD GKT+FVK G +++ + G+ + I F++WD G
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 68
Query: 157 DSRSFDHVPIACKDAVAI-----LFMFDLTSRCT 185
+ +D I + MFD+TSR T
Sbjct: 69 QEKYG-----GLRDGYYIQAQCAIIMFDVTSRVT 97
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Query: 95 DSDLVSLKISLLGDCQIGKTSFVK--YVGNEQERSLQMAGLNLINKTLMVQGARIAFSIW 152
+ ++ + K+ L+GD GKT+FVK G +++ + G+ + + I F +W
Sbjct: 7 NGEVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVW 66
Query: 153 DVGGDSRSFDHVPIACKDAVAILFMFDLTSRCT 185
D G + +A + MFD+TSR T
Sbjct: 67 DTAGLEKFGGLRDGYYINAQCAIIMFDVTSRIT 99
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 12/94 (12%)
Query: 99 VSLKISLLGDCQIGKTSFVK--YVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 156
V K+ L+GD GKT+FVK G +++ + G+ + I F++WD G
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAG 68
Query: 157 DSRSFDHVPIACKDAVAI-----LFMFDLTSRCT 185
+ +D I + MFD+TSR T
Sbjct: 69 QEKFG-----GLRDGYYIQAQCAIIMFDVTSRVT 97
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 12/94 (12%)
Query: 99 VSLKISLLGDCQIGKTSFVK--YVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 156
V K+ L+GD GKT+FVK G +++ + G+ + I F++WD G
Sbjct: 14 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 73
Query: 157 DSRSFDHVPIACKDAVAI-----LFMFDLTSRCT 185
+ +D I + MFD+TSR T
Sbjct: 74 QEKFG-----GLRDGYYIQAQCAIIMFDVTSRVT 102
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Query: 99 VSLKISLLGDCQIGKTSFVK--YVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 156
V K+ L+GD GKT+FVK G +++ + G+ + I F++WD G
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 68
Query: 157 DSRSFDHVPIACKDAVAILFMFDLTSRCT 185
+ A + MFD+TSR T
Sbjct: 69 QEKFGGLEDGYYIQAQCAIIMFDVTSRVT 97
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 101 LKISLLGDCQIGKTSF-VKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
+KI L+GD +GK+ V++V ++ S + G++ KT+ + G ++ IWD G
Sbjct: 4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTL 186
R + A+ I+ ++D+T T
Sbjct: 64 RFRTITTAYYRGAMGIILVYDITDERTF 91
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 12/94 (12%)
Query: 99 VSLKISLLGDCQIGKTSFVK--YVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 156
V K+ L+GD GKT+FVK G +++ + G+ + I F++WD G
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 68
Query: 157 DS-----RSFDHVPIACKDAVAILFMFDLTSRCT 185
R ++ C + MFD+TSR T
Sbjct: 69 QEKFGGLRDGYYIQAQCA-----IIMFDVTSRVT 97
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Query: 99 VSLKISLLGDCQIGKTSFVK--YVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 156
V K+ L+GD GKT+FVK G +++ + G+ + I F++WD G
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAG 68
Query: 157 DSRSFDHVPIACKDAVAILFMFDLTSRCT 185
+ A + MFD+TSR T
Sbjct: 69 QEKFGGLRDGYYIQAQCAIIMFDVTSRVT 97
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Query: 96 SDLVSLKISLLGDCQIGKTSFVK--YVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWD 153
++ + K+ L+GD GKT+FVK G +++ + G+ + + I F +WD
Sbjct: 1 GEVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWD 60
Query: 154 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCT 185
G + +A + MFD+TSR T
Sbjct: 61 TAGLEKFGGLRDGYYINAQCAIIMFDVTSRIT 92
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 12/94 (12%)
Query: 99 VSLKISLLGDCQIGKTSFVK--YVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 156
V K+ L+GD GKT+FVK G +++ + G+ + I F++WD G
Sbjct: 2 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 61
Query: 157 DSRSFDHVPIACKDAVAI-----LFMFDLTSRCT 185
+ +D I + MFD+TSR T
Sbjct: 62 QEKFG-----GLRDGYYIQAQCAIIMFDVTSRVT 90
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 4/95 (4%)
Query: 99 VSLKISLLGDCQIGKTSFVKYVGNEQERSLQMA--GLNLINKTLMVQGARIAFSIWDVGG 156
V LK+ +LGD +GKTS + N++ + A G + + K +MV + IWD G
Sbjct: 7 VLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAG 66
Query: 157 DSRSFDHVPIA-CKDAVAILFMFDLTSRCTLNRFD 190
R F + +A + A + +FD+T+ T D
Sbjct: 67 LER-FQSLGVAFYRGADCCVLVFDVTAPNTFKTLD 100
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Query: 99 VSLKISLLGDCQIGKTSFVK--YVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 156
V K+ L+GD GKT+FVK G +++ + G+ + I F++WD G
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 68
Query: 157 DSRSFDHVPIACKDAVAILFMFDLTSRCT 185
+ A + MFD+TSR T
Sbjct: 69 QEKFGGLRDGYYIQAQCAIIMFDVTSRVT 97
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Query: 97 DLVSLKISLLGDCQIGKTSFVK--YVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDV 154
++ + K+ L+GD GKT+FVK G +++ + G+ + + I F +WD
Sbjct: 1 EVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDT 60
Query: 155 GGDSRSFDHVPIACKDAVAILFMFDLTSRCT 185
G + +A + MFD+TSR T
Sbjct: 61 AGLEKFGGLRDGYYINAQCAIIMFDVTSRIT 91
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 12/95 (12%)
Query: 101 LKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLM--VQGA--------RIA 148
+K+ LGD +GKT+F+ +Y N+ + + G++ K ++ QG ++
Sbjct: 26 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 85
Query: 149 FSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR 183
+WD G R +DA+ L MFDLTS+
Sbjct: 86 LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQ 120
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 101 LKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
K+ L+G+ +GKT+ + ++ NE S G+ +T+M+ A + IWD G
Sbjct: 11 FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 70
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCT 185
R + AV L +FDLT T
Sbjct: 71 RYRAITSAYYRGAVGALLVFDLTKHQT 97
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 101 LKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
K+ L+G+ +GKT+ + ++ NE S G+ +T+M+ A + IWD G
Sbjct: 26 FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 85
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCT 185
R + AV L +FDLT T
Sbjct: 86 RYRAITSAYYRGAVGALLVFDLTKHQT 112
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Query: 99 VSLKISLLGDCQIGKTSFVK--YVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 156
V K+ L+GD GKT+FVK G +++ + G+ + I F++WD G
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 68
Query: 157 DSRSFDHVPIACKDAVAILFMFDLTSRCT 185
+ A + MFD+TSR T
Sbjct: 69 QEKFGGLRDGYYIQAQCAIIMFDVTSRVT 97
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 55/110 (50%), Gaps = 5/110 (4%)
Query: 79 AGLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSF-VKYVGNEQERS-LQMAGLNLI 136
+GL +S + +G DS +KI L+GD +GK+ V++V ++ S + G++
Sbjct: 2 SGLRTVSASSGNGKSYDS---IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFK 58
Query: 137 NKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTL 186
KT+ + G ++ +WD G R + A+ I+ ++D+T T
Sbjct: 59 IKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTF 108
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 5/92 (5%)
Query: 99 VSLKISLLGDCQIGKTSFVKYVGNE--QERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 156
V KI ++GD Q GKT+ + + E + N + + RI S+WD G
Sbjct: 22 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSG 80
Query: 157 DSRSFDHV-PIACKDAVAILFMFDLTSRCTLN 187
S +D+V P++ D+ A+L FD++ TL+
Sbjct: 81 -SPYYDNVRPLSYPDSDAVLICFDISRPETLD 111
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 101 LKISLLGDCQIGKTSFV-KYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
K+ ++G+ +GKTSF+ +Y + + G++ KT+ R+ IWD G
Sbjct: 24 FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE 83
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLN 187
R + A+ + M+D+T+ + N
Sbjct: 84 RYRTITTAYYRGAMGFILMYDITNEESFN 112
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 5/92 (5%)
Query: 99 VSLKISLLGDCQIGKTSFVKYVGNE--QERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 156
V KI ++GD Q GKT+ + + E + N + + RI S+WD G
Sbjct: 27 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSG 85
Query: 157 DSRSFDHV-PIACKDAVAILFMFDLTSRCTLN 187
S +D+V P++ D+ A+L FD++ TL+
Sbjct: 86 -SPYYDNVRPLSYPDSDAVLICFDISRPETLD 116
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 5/92 (5%)
Query: 99 VSLKISLLGDCQIGKTSFVKYVGNE--QERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 156
V KI ++GD Q GKT+ + + E + N + + RI S+WD G
Sbjct: 6 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSG 64
Query: 157 DSRSFDHV-PIACKDAVAILFMFDLTSRCTLN 187
S +D+V P++ D+ A+L FD++ TL+
Sbjct: 65 -SPYYDNVRPLSYPDSDAVLICFDISRPETLD 95
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 13/106 (12%)
Query: 91 GYDTDSDLVSL-KISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLM--VQGA 145
G TD D L K+ LGD +GKT+F+ +Y N+ + + G++ K ++ QGA
Sbjct: 1 GSXTDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGA 60
Query: 146 --------RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR 183
++ +WD G R +DA L FDLTS+
Sbjct: 61 DGASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQ 106
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 12/94 (12%)
Query: 99 VSLKISLLGDCQIGKTSFVK--YVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVG- 155
V K+ L+GD GKT+FVK G +++ + G+ + I F++WD
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 68
Query: 156 ----GDSRSFDHVPIACKDAVAILFMFDLTSRCT 185
G R ++ C + MFD+TSR T
Sbjct: 69 LEKFGGLRDGYYIQAQCA-----IIMFDVTSRVT 97
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 102 KISLLGDCQIGKTSF-VKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 159
KI L+GD +GK+ V++V ++ S + G++ KT+ + G ++ IWD G R
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 160 SFDHVPIACKDAVAILFMFDLTSRCTL 186
+ A I+ ++D+T T
Sbjct: 65 FRTITTAYYRGAXGIILVYDITDERTF 91
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 13/106 (12%)
Query: 91 GYDTDSDLVSL-KISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLM--VQGA 145
G TD D L K+ LGD +GKT+F+ +Y N+ + + G++ K ++ QGA
Sbjct: 1 GSXTDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGA 60
Query: 146 --------RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR 183
++ +WD G R +DA L FDLTS+
Sbjct: 61 DGASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQ 106
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 101 LKISLLGDCQIGKTSF-VKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
+KI L+GD +GK+ V++V ++ S + G++ KT+ + G ++ +WD G
Sbjct: 8 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 67
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTL 186
R + A+ I+ ++D+T T
Sbjct: 68 RFRTITTAYYRGAMGIILVYDVTDERTF 95
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 102 KISLLGDCQIGKTSFVKYVGNE--QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 159
K+ L+GD Q GKT+ ++ + + E + N L + R+ S+WD G S
Sbjct: 13 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSG-SP 70
Query: 160 SFDHV-PIACKDAVAILFMFDLT 181
+D+V P+ D+ A+L FD++
Sbjct: 71 YYDNVRPLCYSDSDAVLLCFDIS 93
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Query: 99 VSLKISLLGDCQIGKTSFVK--YVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 156
V K+ L+GD GKT+FVK G +++ + G+ + I F++WD G
Sbjct: 5 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 64
Query: 157 DSRSFDHVPIACKDAVAILFMFDLTSRCT 185
+ A + MFD+TSR T
Sbjct: 65 LEKFGGLRDGYYIQAQCAIIMFDVTSRVT 93
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Query: 99 VSLKISLLGDCQIGKTSFVK--YVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 156
V K+ L+GD GKT+FVK G +++ + G+ + I F++WD G
Sbjct: 11 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 70
Query: 157 DSRSFDHVPIACKDAVAILFMFDLTSRCT 185
+ A + MFD+TSR T
Sbjct: 71 LEKFGGLRDGYYIQAQCAIIMFDVTSRVT 99
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 102 KISLLGDCQIGKTSFVKYVGNE--QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 159
K+ L+GD Q GKT+ ++ + + E + N L + R+ S+WD G S
Sbjct: 12 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSG-SP 69
Query: 160 SFDHV-PIACKDAVAILFMFDLT 181
+D+V P+ D+ A+L FD++
Sbjct: 70 YYDNVRPLCYSDSDAVLLCFDIS 92
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 49/90 (54%), Gaps = 5/90 (5%)
Query: 101 LKISLLGDCQIGKTSFV-KYVGNEQERSLQMA-GLNLINKTLMVQGARIA-FSIWDVGGD 157
LK+ +LGD +GKTS + +YV ++ + + G + + K + V G ++A +WD G
Sbjct: 9 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 68
Query: 158 SRSFDHVPIA-CKDAVAILFMFDLTSRCTL 186
R F + +A + A + ++D+T+ +
Sbjct: 69 ER-FQSLGVAFYRGADCCVLVYDVTNASSF 97
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 101 LKISLLGDCQIGKTSFV-KYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
K+ L+G+ +GKTSF+ +Y + + G++ KT+ RI IWD G
Sbjct: 23 FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE 82
Query: 159 RSFDHVPIACKDAVAILFMFDLTSR 183
R + A+ L M+D+ ++
Sbjct: 83 RYRTITTAYYRGAMGFLLMYDIANQ 107
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Query: 95 DSDLVSLKISLLGDCQIGKTSFVKYVGNEQERSLQMA--GLNLINKTLMVQGARIAFSIW 152
D D + KI L+G+ +GKT V+ Q A G++ + KT+ + G ++ IW
Sbjct: 22 DYDFL-FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIW 80
Query: 153 DVGGDSRSFDHVPIACKDAVAILFMFDLT 181
D G R + A A++ +D+T
Sbjct: 81 DTAGQERFRSITQSYYRSANALILTYDIT 109
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 6/86 (6%)
Query: 100 SLKISLLGDCQIGKTSFVKYVGNEQ--ERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 157
++++L+G GKT+FV + + Q E + G N+ V + IWD+GG
Sbjct: 22 EMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRK----VTKGNVTIKIWDIGGQ 77
Query: 158 SRSFDHVPIACKDAVAILFMFDLTSR 183
R C+ AI++M D R
Sbjct: 78 PRFRSMWERYCRGVNAIVYMIDAADR 103
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 102 KISLLGDCQIGKTSFVKYVGNE--QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 159
K+ L+GD Q GKT+ ++ + + E + N L + R+ S+WD G S
Sbjct: 29 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSG-SP 86
Query: 160 SFDHV-PIACKDAVAILFMFDLT 181
+D+V P+ D+ A+L FD++
Sbjct: 87 YYDNVRPLCYSDSDAVLLCFDIS 109
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 6/104 (5%)
Query: 90 SGYDTDSDLVSLKISLLGDCQIGKTSFVK-YVGNEQERSLQMAGLNLINKTLMVQGARIA 148
+G + + S+K+ L+GD GKTS + + S L V+G +
Sbjct: 24 AGEEAPPGVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVH 83
Query: 149 FSIWDVGGDSRSFDHV-PIACKDAVAILFMFDLTSRCTLNRFDH 191
IWD G +D + P+ DA +L FD+TS N FD+
Sbjct: 84 LHIWDTAGQD-DYDRLRPLFYPDASVLLLCFDVTSP---NSFDN 123
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 100 SLKISLLGDCQIGKTSFVKYVGNEQ--ERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 157
L++ ++G +GKTS ++ ++ E G++ KT+ ++G +I IWD G
Sbjct: 26 KLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQ 85
Query: 158 SRSFDHVPIACKDAVAILFMFDLTSRCTLN 187
R + A I+ ++D+T + T +
Sbjct: 86 ERFNSITSAYYRSAKGIILVYDITKKETFD 115
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 101 LKISLLGDCQIGKTSFVKYVGNEQERS--LQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
K+ L+GD +GKT + + S + G++ +T+ + G RI IWD G
Sbjct: 7 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 66
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLN 187
R + A+ I+ ++D+T+ + +
Sbjct: 67 RFRTITTAYYRGAMGIMLVYDITNEKSFD 95
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 12/94 (12%)
Query: 99 VSLKISLLGDCQIGKTSFVK--YVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 156
V K+ L+GD GKT+FVK G +++ + G+ + I F++WD G
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 68
Query: 157 DS-----RSFDHVPIACKDAVAILFMFDLTSRCT 185
R ++ C + FD+TSR T
Sbjct: 69 QEKFGGLRDGYYIQAQCA-----IIXFDVTSRVT 97
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 101 LKISLLGDCQIGKTSFVKYVGNEQERS--LQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
K+ L+GD +GKT + + S + G++ +T+ + G RI IWD G
Sbjct: 9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLN 187
R + A+ I+ ++D+T+ + +
Sbjct: 69 RFRTITTAYYRGAMGIMLVYDITNEKSFD 97
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Query: 101 LKISLLGDCQIGKTSFV-KYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
KI ++G+ +GKTSF+ +Y + + G++ KT+ RI IWD G
Sbjct: 9 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLN 187
R + A + +D+T+ + N
Sbjct: 69 RYRTITTAYYRGAXGFILXYDITNEESFN 97
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 102 KISLLGDCQIGKTSF-VKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 159
KI L+GD +GK+ V++V ++ S + G++ KT+ + G ++ +WD G R
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 64
Query: 160 SFDHVPIACKDAVAILFMFDLTSRCTL 186
+ A I+ ++D+T T
Sbjct: 65 FRTITTAYYRGAXGIILVYDVTDERTF 91
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 13/106 (12%)
Query: 93 DTDSDLVSLKISLLGDCQIGKTSFV-KYV-GNEQERSLQMAGLNLINKTLMVQ------- 143
D D D + +K LGD +GKTS + +Y G + + G++ K ++ +
Sbjct: 5 DGDYDYL-IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGA 63
Query: 144 ---GARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTL 186
G RI +WD G R +DA+ L +FDLT+ +
Sbjct: 64 VGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSF 109
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 45/103 (43%), Gaps = 16/103 (15%)
Query: 70 SSPAPDTMEAGLVELSRTFSSGYDTDSD------LVSLKISLLGDCQIGKTSFVKYVGNE 123
SP P+ ++ G + + F S + S L +K+ L+GD GKTS +K + E
Sbjct: 5 ESPPPEIVKQGKEAVRQYFQSIEEARSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLIGE 64
Query: 124 --QERSLQMAGLNLINKTLM-VQG-------ARIAFSIWDVGG 156
+ Q GLN++ K ++G F WD GG
Sbjct: 65 TFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGG 107
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Query: 96 SDLVSLKISLLGDCQIGKTSFVKYVGNEQ--ERSLQMAGLNLINKTLMVQG-ARIAFSIW 152
S + LKI +LGD GKTS E ++ Q GL+ + + + G + IW
Sbjct: 2 SHMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIW 61
Query: 153 DVGGDSRSFDHVPIACKDAVAILFMFDLTS 182
D+GG + + A +L ++D+T+
Sbjct: 62 DIGGQTIGGKMLDKYIYGAQGVLLVYDITN 91
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 100 SLKISLLGDCQIGKTSFVKYVGNEQ--ERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 157
++++L+G GKT+FV + + Q E + G N+ T + +WD+GG
Sbjct: 22 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKIT----KGNVTIKLWDIGGQ 77
Query: 158 SRSFDHVPIACKDAVAILFMFD 179
R C+ AI++M D
Sbjct: 78 PRFRSMWERYCRGVSAIVYMVD 99
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 35.8 bits (81), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 146 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNR 188
I F IWD G R VP+ + A + +FD+++ TL+R
Sbjct: 92 NIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDR 134
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 35.4 bits (80), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 100 SLKISLLGDCQIGKTSFVKYVGNEQ--ERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 157
++++L+G GKT+FV + + Q E + G N+ T + +WD+GG
Sbjct: 31 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKIT----KGNVTIKLWDIGGQ 86
Query: 158 SRSFDHVPIACKDAVAILFMFD 179
R C+ AI++M D
Sbjct: 87 PRFRSMWERYCRGVSAIVYMVD 108
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 33.5 bits (75), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 102 KISLLGDCQIGKTSFVKYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWD 153
++ LLGD +GKTS +QER L + G ++ +TL V G + D
Sbjct: 6 RVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVD 58
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Query: 100 SLKISLLGDCQIGKTSF-VKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
++K ++GD +GKT + Y N + + +MV G + +WD G
Sbjct: 5 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 63
Query: 159 RSFDHV-PIACKDAVAILFMFDLTSR 183
+D + P++ V + D+TSR
Sbjct: 64 EDYDRLRPLSYPQTVGETYGKDITSR 89
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 30.8 bits (68), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 10/81 (12%)
Query: 80 GLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVKYVGNEQERSL-QMAGLNLINK 138
GL+ + R S D + ++I LLG GKT+ +K + +E + G N+ K
Sbjct: 2 GLLSILRKLKSAPDQE-----VRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNI--K 54
Query: 139 TLMVQGARIAFSIWDVGGDSR 159
++ QG ++ ++WD+GG +
Sbjct: 55 SVQSQGFKL--NVWDIGGQRK 73
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 30.8 bits (68), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 10/81 (12%)
Query: 80 GLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVKYVGNEQERSL-QMAGLNLINK 138
GL+ + R S D + ++I LLG GKT+ +K + +E + G N+ K
Sbjct: 1 GLLSILRKLKSAPDQE-----VRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNI--K 53
Query: 139 TLMVQGARIAFSIWDVGGDSR 159
++ QG ++ ++WD+GG +
Sbjct: 54 SVQSQGFKL--NVWDIGGQRK 72
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 30.4 bits (67), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/89 (20%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Query: 101 LKISLLGDCQIGKTSFVKYVGNEQERS--LQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
K+ L+G+ +GK+ + ++ + + G++ KT+ + G + IWD G
Sbjct: 22 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 81
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLN 187
R + + I+ ++D+T + + N
Sbjct: 82 RFRTITSSYYRGSHGIIIVYDVTDQESFN 110
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 30.4 bits (67), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 18/89 (20%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Query: 101 LKISLLGDCQIGKTSFVKYVGNEQERS--LQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
K+ L+G+ +GK+ + ++ + + G++ KT+ + G + IWD G
Sbjct: 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLN 187
R + + I+ ++D+T + + N
Sbjct: 69 RFRTITSSYYRGSHGIIIVYDVTDQESFN 97
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 30.4 bits (67), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 18/89 (20%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Query: 101 LKISLLGDCQIGKTSFVKYVGNEQERS--LQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
K+ L+G+ +GK+ + ++ + + G++ KT+ + G + IWD G
Sbjct: 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLN 187
R + + I+ ++D+T + + N
Sbjct: 69 RFRTITSSYYRGSHGIIIVYDVTDQESFN 97
>pdb|4B6G|A Chain A, The Crystal Structure Of The Neisserial Esterase D.
pdb|4B6G|B Chain B, The Crystal Structure Of The Neisserial Esterase D
Length = 283
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 112 GKTSFVKYVGNEQERSLQMAGLNLINKTLMVQGARI 147
G+ +F Y+G ++E+ Q +LI + VQG RI
Sbjct: 188 GEKAFTAYLGKDREKWQQYDANSLIQQGYKVQGMRI 223
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 142 VQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRC 184
VQ I+F++WDVGG R ++ ++F+ D R
Sbjct: 56 VQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRS 98
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 142 VQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR 183
VQ I+F++WDVGG R ++ ++F+ D R
Sbjct: 39 VQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDR 80
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 142 VQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRC 184
VQ I+F++WDVGG R ++ ++F+ D R
Sbjct: 56 VQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRS 98
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 96 SDLVSLKISLLGDCQIGKTSFVKYVGNEQERSLQMAGLNLINKTLMVQGAR---IAFSIW 152
SD K+ LLG +GK++ + G ++ A + +++++V G + + IW
Sbjct: 3 SDESVYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIW 62
Query: 153 DVGGDSRSFDHVPIACKDAVAILF 176
+ G H +A DA I++
Sbjct: 63 EQDGGRWLPGHC-MAMGDAYVIVY 85
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 96 SDLVSLKISLLGDCQIGKTSFVKYVGNEQERSLQMAGLNLINKTLMVQGAR---IAFSIW 152
SD K+ LLG +GK++ + G ++ A + +++++V G + + IW
Sbjct: 3 SDESVYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIW 62
Query: 153 DVGGDSRSFDHVPIACKDAVAILF 176
+ G H +A DA I++
Sbjct: 63 EQDGGRWLPGHC-MAMGDAYVIVY 85
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 100 SLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
++I ++G GKTS + K E ++ G N+ V+ I+F++WDVGG
Sbjct: 17 EMRILMVGLDAAGKTSILYKLKLGEIVTTIPTIGFNVET----VEYKNISFTVWDVGGQD 72
Query: 159 RSFDHVPIACKDAVAILFMFDLTSR 183
+ ++ AI+F+ D R
Sbjct: 73 KIRPLWRHYYQNTQAIIFVVDSNDR 97
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 142 VQGARIAFSIWDVGGDSR 159
VQ I+F++WDVGG R
Sbjct: 56 VQYCNISFTVWDVGGQDR 73
>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1.
pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1
Length = 189
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 24/51 (47%)
Query: 142 VQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNRFDHN 192
+Q I+F +WD+GG + + D A++++ D T R + H
Sbjct: 61 LQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHE 111
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 101 LKISLLGDCQIGKTSFVKYVGNEQERSLQ-MAGLNLINKTLMVQGARIAFSIWDVGGDSR 159
++I LLG GKT+ +K + +E + G N+ K++ QG ++ ++WD+GG +
Sbjct: 5 VRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNI--KSVQSQGFKL--NVWDIGGQRK 60
>pdb|2Y6T|E Chain E, Molecular Recognition Of Chymotrypsin By The Serine
Protease Inhibitor Ecotin From Yersinia Pestis
pdb|2Y6T|F Chain F, Molecular Recognition Of Chymotrypsin By The Serine
Protease Inhibitor Ecotin From Yersinia Pestis
pdb|2Y6T|G Chain G, Molecular Recognition Of Chymotrypsin By The Serine
Protease Inhibitor Ecotin From Yersinia Pestis
pdb|2Y6T|H Chain H, Molecular Recognition Of Chymotrypsin By The Serine
Protease Inhibitor Ecotin From Yersinia Pestis
Length = 148
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Query: 85 SRTFSSGYDTDS---DLVSLKISLLGDCQIGKTSFVKYV-GNEQERSLQMAGLNLINKTL 140
+RT S G+ D D +S S + C VK+V N + ++Q L
Sbjct: 66 TRTLS-GWGFDYLVMDKISQPASTMMACPEDSKPQVKFVTANLGDAAMQRYNSRLPIVVY 124
Query: 141 MVQGARIAFSIWDVGGDSRS 160
+ QG + + IW+ G D RS
Sbjct: 125 VPQGVEVKYRIWEAGEDIRS 144
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
Length = 164
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
Query: 101 LKISLLGDCQIGKTSFVKYVGNEQERSLQ-MAGLNLINKTLMVQGARIAFSIWDVGG 156
++I LLG GKT+ +K + +E + G N+ K++ QG ++ ++WD+GG
Sbjct: 5 VRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNI--KSVQSQGFKL--NVWDIGG 57
>pdb|1TQ4|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 413
Score = 26.9 bits (58), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 77 MEAGLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFV---KYVGNEQE 125
M AG ++L+ + S + D L +++ G+ GK+SF+ + +GNE+E
Sbjct: 46 MRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEE 97
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.133 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,480,108
Number of Sequences: 62578
Number of extensions: 145055
Number of successful extensions: 574
Number of sequences better than 100.0: 121
Number of HSP's better than 100.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 452
Number of HSP's gapped (non-prelim): 122
length of query: 193
length of database: 14,973,337
effective HSP length: 93
effective length of query: 100
effective length of database: 9,153,583
effective search space: 915358300
effective search space used: 915358300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)