BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029430
(193 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P87027|SPG1_SCHPO Septum-promoting GTP-binding protein 1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=spg1 PE=1 SV=1
Length = 198
Score = 91.3 bits (225), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/97 (46%), Positives = 63/97 (64%), Gaps = 2/97 (2%)
Query: 93 DTDSDLVSLKISLLGDCQIGKTSF-VKYV-GNEQERSLQMAGLNLINKTLMVQGARIAFS 150
D + V++K+ ++GD IGKTS V YV G+ E S Q G+N + KT+ ++ I FS
Sbjct: 3 DARKNNVTIKVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFS 62
Query: 151 IWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLN 187
IWD+GG + +P+ C DAVAILFMFDL+ + TLN
Sbjct: 63 IWDLGGQREFVNMLPMVCNDAVAILFMFDLSRKSTLN 99
>sp|P38987|TEM1_YEAST Protein TEM1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=TEM1 PE=1 SV=1
Length = 245
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
Query: 99 VSLKISLLGDCQIGKTSF-VKYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGG 156
V +++ L+GD Q+GKTS VKYV N ++ Q G+N + + + ++ I FSI D+GG
Sbjct: 19 VEVQVGLVGDAQVGKTSLMVKYVQNIYDKEYTQTLGVNFLKRKVSIRSTDIIFSIMDLGG 78
Query: 157 DSRSFDHVPIACKDAVAILFMFDLTSRCTL 186
+ +PIA + I+F+FDLT TL
Sbjct: 79 QREFINMLPIATVGSSVIIFLFDLTRPETL 108
>sp|Q9VP48|RAB26_DROME Ras-related protein Rab-26 OS=Drosophila melanogaster GN=Rab26 PE=2
SV=2
Length = 388
Score = 60.1 bits (144), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 51/96 (53%), Gaps = 7/96 (7%)
Query: 97 DLVSLKISLLGDCQIGKTSF-VKYVGNEQERSL----QMAGLNLINKTLMVQGARIAFSI 151
D V+ K LLGD +GKTSF VKY N E L G+ L NK ++V G R+ I
Sbjct: 187 DTVNHKTILLGDSGVGKTSFLVKY--NTGEFRLGSFSATVGIALTNKVVVVDGTRVKLQI 244
Query: 152 WDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLN 187
WD G R +DA A+L ++D+T++ T +
Sbjct: 245 WDTAGQERFRSVTHAYYRDAHALLLLYDVTNKTTYD 280
>sp|Q9JKM7|RAB37_MOUSE Ras-related protein Rab-37 OS=Mus musculus GN=Rab37 PE=1 SV=2
Length = 223
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 8/108 (7%)
Query: 83 ELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVKYVGNEQERS---LQMAGLNLINKT 139
E S FS YD ++ K+ LLGD +GKT F+ + S + G++ NK
Sbjct: 17 ERSPPFSPNYD-----LTGKVMLLGDSGVGKTCFLIQFKDGAFLSGTFIATVGIDSRNKV 71
Query: 140 LMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLN 187
+ V GAR+ IWD G R +DA A+L ++D+T++ + +
Sbjct: 72 VTVDGARVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNQSSFD 119
>sp|Q9SN68|RAF2B_ARATH Ras-related protein RABF2b OS=Arabidopsis thaliana GN=RABF2B PE=1
SV=1
Length = 200
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 8/95 (8%)
Query: 99 VSLKISLLGDCQIGKTSFV-KYVGNE----QERSLQMAGLNLINKTLMVQGARIAFSIWD 153
++ K+ LLGD GK+S V ++V ++ QE ++ G ++TL V A + F IWD
Sbjct: 9 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTI---GAAFFSQTLAVNDATVKFEIWD 65
Query: 154 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNR 188
G R P+ + A A + +FD+T++ + R
Sbjct: 66 TAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFER 100
>sp|P31582|RAF2A_ARATH Ras-related protein RABF2a OS=Arabidopsis thaliana GN=RABF2A PE=1
SV=1
Length = 200
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 8/95 (8%)
Query: 99 VSLKISLLGDCQIGKTSFV-KYVGNE----QERSLQMAGLNLINKTLMVQGARIAFSIWD 153
++ K+ LLGD GK+S V ++V ++ QE ++ G ++TL V A + F IWD
Sbjct: 9 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTI---GAAFFSQTLAVNDATVKFEIWD 65
Query: 154 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNR 188
G R P+ + A A + +FD+T++ + R
Sbjct: 66 TAGQERYHSLAPMYYRGAAAAIIVFDITNQASFER 100
>sp|Q8WQ53|RAB21_GEOCY Ras-related protein Rab-21 OS=Geodia cydonium GN=RAB21 PE=2 SV=1
Length = 229
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 8/95 (8%)
Query: 99 VSLKISLLGDCQIGKTSFV-KYVGNE----QERSLQMAGLNLINKTLMVQGARIAFSIWD 153
V K+ LLG+ +GKTS V +Y N+ E++LQ + + K L + G RI +IWD
Sbjct: 15 VKAKVVLLGEGAVGKTSLVLRYSENKFNDKHEQTLQAS---FVEKRLNIGGKRIQLAIWD 71
Query: 154 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNR 188
G R PI +D+ + ++D+T + ++
Sbjct: 72 TAGQERYHALGPIYYRDSQGAIIVYDITDEDSFHK 106
>sp|Q8MXS1|RAB18_CAEEL Ras-related protein Rab-18 OS=Caenorhabditis elegans GN=rab-18 PE=3
SV=1
Length = 203
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 55/103 (53%), Gaps = 6/103 (5%)
Query: 93 DTDSDLVSLKISLLGDCQIGKTS----FVKYVGNEQERSLQMAGLNLINKTLMVQGARIA 148
D+ S L +LKI ++G+ +GK+S FV V + ++ + G++ ++ + G R+
Sbjct: 4 DSSSPLTTLKILIIGESGVGKSSLMLRFVDDVFDPEQAA--TIGVDFRVTSMAIDGNRVK 61
Query: 149 FSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNRFDH 191
+IWD G R P + A ++ ++D+TSR + + +H
Sbjct: 62 LAIWDTAGQERFRTLTPSYYRGAQGVICVYDVTSRSSFEKLNH 104
>sp|P41914|RAN_TETPY GTP-binding nuclear protein Ran OS=Tetrahymena pyriformis PE=2 SV=1
Length = 223
Score = 51.2 bits (121), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 3/96 (3%)
Query: 93 DTDSDLVS-LKISLLGDCQIGKTSFV--KYVGNEQERSLQMAGLNLINKTLMVQGARIAF 149
D D+V+ K+ L+GD +GKT+FV G ++R + G+N+ N L I F
Sbjct: 3 DNKQDVVAEFKLVLVGDGGVGKTTFVTRHQTGEFEKRYIATQGVNVSNMILHTTKGAIRF 62
Query: 150 SIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCT 185
+IWD G + A A + MFD+TSR T
Sbjct: 63 NIWDTAGQEKLGGLREGYYIGADAAIMMFDVTSRIT 98
>sp|P90726|RAB18_CAEBR Ras-related protein Rab-18 OS=Caenorhabditis briggsae GN=rab-18
PE=3 SV=1
Length = 202
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 54/103 (52%), Gaps = 6/103 (5%)
Query: 93 DTDSDLVSLKISLLGDCQIGKTS----FVKYVGNEQERSLQMAGLNLINKTLMVQGARIA 148
D+ S L +LKI ++G+ +GK+S FV V + ++ + G++ ++ + G R+
Sbjct: 4 DSSSPLTTLKILIIGESGVGKSSLMLRFVDDVFDPEQAA--TIGVDFRVTSMTIDGNRVK 61
Query: 149 FSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNRFDH 191
+IWD G R P + A ++ ++D+TSR + + H
Sbjct: 62 LAIWDTAGQERFRTLTPSYYRGAQGVICVYDVTSRSSFEKLKH 104
>sp|P41915|RAN_TETTH GTP-binding nuclear protein Ran OS=Tetrahymena thermophila PE=2
SV=1
Length = 225
Score = 50.4 bits (119), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 98 LVSLKISLLGDCQIGKTSFV--KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVG 155
+ K+ L+GD +GKT+FV G ++R + G+N+ N L I F+IWD
Sbjct: 9 VAEFKLVLVGDGGVGKTTFVTRHQTGEFEKRYIATQGVNVSNMVLYTTKGPIRFNIWDTA 68
Query: 156 GDSRSFDHVPIACKDAVAILFMFDLTSRCT 185
G + A A + MFD+TSR T
Sbjct: 69 GQEKLGGLREGYYIGANAAIMMFDVTSRIT 98
>sp|Q96AX2|RAB37_HUMAN Ras-related protein Rab-37 OS=Homo sapiens GN=RAB37 PE=1 SV=3
Length = 223
Score = 50.4 bits (119), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 52/108 (48%), Gaps = 8/108 (7%)
Query: 83 ELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVKYVGNEQERS---LQMAGLNLINKT 139
E S S YD ++ K+ LLGD +GKT F+ + S + G++ NK
Sbjct: 17 ERSPPCSPSYD-----LTGKVMLLGDTGVGKTCFLIQFKDGAFLSGTFIATVGIDFRNKV 71
Query: 140 LMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLN 187
+ V G R+ IWD G R +DA A+L ++D+T++ + +
Sbjct: 72 VTVDGVRVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNKSSFD 119
>sp|O49841|RAC2A_ARATH Ras-related protein RABC2a OS=Arabidopsis thaliana GN=RABC2A PE=1
SV=1
Length = 210
Score = 50.1 bits (118), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 50/106 (47%), Gaps = 6/106 (5%)
Query: 85 SRTFSSGYDTDSDLVSLKISLLGDCQIGKTS-FVKYVGNEQERSLQMAGLNLINKTLMVQ 143
S + SGYD +S KI L+GD +GK+S V ++ + E G++ K L V
Sbjct: 3 SSSGQSGYD-----LSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVG 57
Query: 144 GARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNRF 189
G R+ +IWD G R + A I+ ++D+T R T
Sbjct: 58 GKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNL 103
>sp|P31583|RHN1_NICPL Ras-related protein RHN1 OS=Nicotiana plumbaginifolia GN=RHN1 PE=2
SV=1
Length = 200
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 99 VSLKISLLGDCQIGKTSFV-KYVGNE----QERSLQMAGLNLINKTLMVQGARIAFSIWD 153
++ K+ LLGD GK+S V ++V + QE ++ G + TL V A + F IWD
Sbjct: 9 LNAKLVLLGDMGAGKSSLVIRFVKGQFLEFQESTI---GAAFFSSTLAVNNATVKFEIWD 65
Query: 154 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNR 188
G R P+ + A A + ++D+TS + R
Sbjct: 66 TAGQERYHSLAPMYYRGAAAAIIVYDITSSDSFAR 100
>sp|P29687|RAB5_TOBAC Ras-related protein Rab5 OS=Nicotiana tabacum GN=RAB5 PE=2 SV=1
Length = 200
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 8/95 (8%)
Query: 99 VSLKISLLGDCQIGKTSFV-KYVGNE----QERSLQMAGLNLINKTLMVQGARIAFSIWD 153
++ K+ LLGD GK+S V ++V + QE ++ G + T+ V A + F IWD
Sbjct: 9 LNAKLVLLGDMGAGKSSLVIRFVKGQFLEFQESTI---GAAFFSSTVSVNNATVKFEIWD 65
Query: 154 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNR 188
G R P+ + A A + ++D+TS +L R
Sbjct: 66 TAGQERYHSLAPMYYRGAAAAIIVYDITSTESLAR 100
>sp|P36019|YPT53_YEAST GTP-binding protein YPT53 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=YPT53 PE=1 SV=1
Length = 220
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 99 VSLKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 156
+++K+ LLG+ +GK+S V ++V ++ +E G + K + G I F IWD G
Sbjct: 11 LTIKVVLLGESAVGKSSIVLRFVSDDFKESKEPTIGAAFLTKRITRDGKVIKFEIWDTAG 70
Query: 157 DSRSFDHVPIACKDAVAILFMFDLTSR 183
R P+ ++A A L +FD+T+
Sbjct: 71 QERFAPLAPMYYRNAQAALVVFDVTNE 97
>sp|Q54FL2|RABG2_DICDI Ras-related protein RabG2 OS=Dictyostelium discoideum GN=rabG2 PE=3
SV=2
Length = 197
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 96 SDLVSLKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWD 153
SD KI L+GD +GKTS + ++ N QE S+ M ++ NK +++ G IWD
Sbjct: 2 SDPDVFKILLIGDSAVGKTSLLLRFADNSFQETSVNMTSVDYKNKNIVIDGRTFNLQIWD 61
Query: 154 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLN 187
G R + A +L +D+T + T N
Sbjct: 62 TAGQERFRTITSSFYRGAHGVLVCYDVTDQLTYN 95
>sp|Q29RR0|RAB26_BOVIN Ras-related protein Rab-26 OS=Bos taurus GN=RAB26 PE=2 SV=1
Length = 256
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 62/136 (45%), Gaps = 6/136 (4%)
Query: 55 PAVRYQKLTRRSSSESSPAPDTMEAGLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKT 114
PA + R ++ P P+ G + R+ S G D V+ K+ L+GD +GKT
Sbjct: 21 PAANGPRPVRPGTAR--PGPEAPPNGPPQPGRS-SVGGGGDFYDVAFKVMLVGDSGVGKT 77
Query: 115 SF-VKYVGNE--QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDA 171
V++ + G++ NK + V G ++ IWD G R +DA
Sbjct: 78 CLLVRFKDGAFLAGTFISTVGIDFRNKVVDVDGMKVKLQIWDTAGQERFRSVTHAYYRDA 137
Query: 172 VAILFMFDLTSRCTLN 187
A+L ++D+T++ + +
Sbjct: 138 HALLLLYDVTNKASFD 153
>sp|Q86YS6|RAB43_HUMAN Ras-related protein Rab-43 OS=Homo sapiens GN=RAB43 PE=1 SV=1
Length = 212
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Query: 101 LKISLLGDCQIGKTSFVK--YVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
K+ L+GD +GKT V+ G ER G++ KTL +QG R+ IWD G
Sbjct: 19 FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 78
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNRFDH 191
R + A + +D+T R + H
Sbjct: 79 RFRTITQSYYRSANGAILAYDITKRSSFLSVPH 111
>sp|P61271|RAB5A_MACFA Ras-related protein Rab-5A OS=Macaca fascicularis GN=RAB5A PE=2
SV=1
Length = 215
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 2/104 (1%)
Query: 87 TFSSGYDTDSDLVSLKISLLGDCQIGKTSFV-KYV-GNEQERSLQMAGLNLINKTLMVQG 144
T +G +T + + K+ LLG+ +GK+S V ++V G E G + +T+ +
Sbjct: 7 TRPNGPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDD 66
Query: 145 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNR 188
+ F IWD G R P+ + A A + ++D+T+ + R
Sbjct: 67 TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFAR 110
>sp|P20339|RAB5A_HUMAN Ras-related protein Rab-5A OS=Homo sapiens GN=RAB5A PE=1 SV=2
Length = 215
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 2/104 (1%)
Query: 87 TFSSGYDTDSDLVSLKISLLGDCQIGKTSFV-KYV-GNEQERSLQMAGLNLINKTLMVQG 144
T +G +T + + K+ LLG+ +GK+S V ++V G E G + +T+ +
Sbjct: 7 TRPNGPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDD 66
Query: 145 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNR 188
+ F IWD G R P+ + A A + ++D+T+ + R
Sbjct: 67 TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFAR 110
>sp|P18066|RAB5A_CANFA Ras-related protein Rab-5A OS=Canis familiaris GN=RAB5A PE=1 SV=1
Length = 215
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 2/104 (1%)
Query: 87 TFSSGYDTDSDLVSLKISLLGDCQIGKTSFV-KYV-GNEQERSLQMAGLNLINKTLMVQG 144
T +G +T + + K+ LLG+ +GK+S V ++V G E G + +T+ +
Sbjct: 7 TRPNGPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDD 66
Query: 145 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNR 188
+ F IWD G R P+ + A A + ++D+T+ + R
Sbjct: 67 TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFAR 110
>sp|Q0IIG7|RAB5A_BOVIN Ras-related protein Rab-5A OS=Bos taurus GN=RAB5A PE=2 SV=1
Length = 215
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 2/104 (1%)
Query: 87 TFSSGYDTDSDLVSLKISLLGDCQIGKTSFV-KYV-GNEQERSLQMAGLNLINKTLMVQG 144
T +G +T + + K+ LLG+ +GK+S V ++V G E G + +T+ +
Sbjct: 7 TRPNGPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDD 66
Query: 145 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNR 188
+ F IWD G R P+ + A A + ++D+T+ + R
Sbjct: 67 TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFAR 110
>sp|Q06AU6|RAB5A_PIG Ras-related protein Rab-5A OS=Sus scrofa GN=RAB5A PE=2 SV=1
Length = 215
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 2/104 (1%)
Query: 87 TFSSGYDTDSDLVSLKISLLGDCQIGKTSFV-KYV-GNEQERSLQMAGLNLINKTLMVQG 144
T +G +T + + K+ LLG+ +GK+S V ++V G E G + +T+ +
Sbjct: 7 TRPNGPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDD 66
Query: 145 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNR 188
+ F IWD G R P+ + A A + ++D+T+ + R
Sbjct: 67 TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFAR 110
>sp|Q9CQD1|RAB5A_MOUSE Ras-related protein Rab-5A OS=Mus musculus GN=Rab5a PE=1 SV=1
Length = 215
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 2/104 (1%)
Query: 87 TFSSGYDTDSDLVSLKISLLGDCQIGKTSFV-KYV-GNEQERSLQMAGLNLINKTLMVQG 144
T +G +T + + K+ LLG+ +GK+S V ++V G E G + +T+ +
Sbjct: 7 TRPNGPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDD 66
Query: 145 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNR 188
+ F IWD G R P+ + A A + ++D+T+ + R
Sbjct: 67 TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFAR 110
>sp|P55745|RAB21_CANFA Ras-related protein Rab-21 OS=Canis familiaris GN=RAB21 PE=3 SV=3
Length = 223
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 100 SLKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 157
S K+ LLG+ +GKTS V +Y N+ ++ + + + K L + G R+ +IWD G
Sbjct: 17 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQ 76
Query: 158 SRSFDHVPIACKDAVAILFMFDLT 181
R PI +D+ + ++D+T
Sbjct: 77 ERFHALGPIYYRDSNGAILVYDIT 100
>sp|P51156|RAB26_RAT Ras-related protein Rab-26 OS=Rattus norvegicus GN=Rab26 PE=2 SV=2
Length = 257
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 58/125 (46%), Gaps = 7/125 (5%)
Query: 72 PAPDTMEAGLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVKYVGNEQERS---L 128
P P+ G + R S G D V+ K+ L+GD +GKT + + + +
Sbjct: 37 PGPEAPPNGPPQSGRP-SLGGTGDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFI 95
Query: 129 QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNR 188
G++ NK L V G ++ IWD G R +DA A+L ++D+T++ +
Sbjct: 96 STVGIDFRNKVLDVDGMKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNK---DS 152
Query: 189 FDHNQ 193
FD+ Q
Sbjct: 153 FDNIQ 157
>sp|Q9UL25|RAB21_HUMAN Ras-related protein Rab-21 OS=Homo sapiens GN=RAB21 PE=1 SV=3
Length = 225
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 100 SLKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 157
S K+ LLG+ +GKTS V +Y N+ ++ + + + K L + G R+ +IWD G
Sbjct: 19 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQ 78
Query: 158 SRSFDHVPIACKDAVAILFMFDLT 181
R PI +D+ + ++D+T
Sbjct: 79 ERFHALGPIYYRDSNGAILVYDIT 102
>sp|Q17R06|RAB21_BOVIN Ras-related protein Rab-21 OS=Bos taurus GN=RAB21 PE=2 SV=1
Length = 222
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 100 SLKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 157
S K+ LLG+ +GKTS V +Y N+ ++ + + + K L + G R+ +IWD G
Sbjct: 16 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQ 75
Query: 158 SRSFDHVPIACKDAVAILFMFDLT 181
R PI +D+ + ++D+T
Sbjct: 76 ERFHALGPIYYRDSNGAILVYDIT 99
>sp|Q9ULW5|RAB26_HUMAN Ras-related protein Rab-26 OS=Homo sapiens GN=RAB26 PE=1 SV=3
Length = 256
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 4/118 (3%)
Query: 73 APDTMEAGLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVKYVGNEQERS---LQ 129
PD G ++ R S G D V+ K+ L+GD +GKT + + + +
Sbjct: 37 GPDAPPNGPLQPGRP-SLGGGVDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFIS 95
Query: 130 MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLN 187
G++ NK L V G ++ +WD G R +DA A+L ++D+T++ + +
Sbjct: 96 TVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFD 153
>sp|Q39222|RAA1B_ARATH Ras-related protein RABA1b OS=Arabidopsis thaliana GN=RABA1B PE=2
SV=1
Length = 216
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 3/104 (2%)
Query: 90 SGYDTDSDLVSL-KISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGAR 146
+GY + D L K+ L+GD +GK++ + ++ NE S G+ +TL V G
Sbjct: 2 AGYRVEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLKVDGKV 61
Query: 147 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNRFD 190
+ IWD G R + AV L ++D+T R T D
Sbjct: 62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENVD 105
>sp|Q6AXT5|RAB21_RAT Ras-related protein Rab-21 OS=Rattus norvegicus GN=Rab21 PE=2 SV=1
Length = 223
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 100 SLKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 157
S K+ LLG+ +GKTS V +Y N+ ++ + + + K L + G R+ +IWD G
Sbjct: 17 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQ 76
Query: 158 SRSFDHVPIACKDAVAILFMFDLT 181
R PI +D+ + ++D+T
Sbjct: 77 ERFHALGPIYYRDSNGAILVYDVT 100
>sp|P36017|VPS21_YEAST Vacuolar protein sorting-associated protein 21 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=VPS21 PE=1
SV=1
Length = 210
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 95 DSDLVSLKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIW 152
++ + S+K+ LLG+ +GK+S V ++V N+ E G + + + + + F IW
Sbjct: 2 NTSVTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIW 61
Query: 153 DVGGDSRSFDHVPIACKDAVAILFMFDLT 181
D G R P+ ++A A L ++D+T
Sbjct: 62 DTAGQERFASLAPMYYRNAQAALVVYDVT 90
>sp|Q5ZHW4|RAB5B_CHICK Ras-related protein Rab-5B OS=Gallus gallus GN=RAB5B PE=2 SV=1
Length = 215
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
Query: 90 SGYDTDSDLVSLKISLLGDCQIGKTSFV-KYV-GNEQERSLQMAGLNLINKTLMVQGARI 147
+G S + K+ LLG+ +GK+S V ++V G E G + +++ + +
Sbjct: 10 NGQSQASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTV 69
Query: 148 AFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNR 188
F IWD G R P+ + A A + ++D+T++ T R
Sbjct: 70 KFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFAR 110
>sp|Q1KME6|RAB6A_CHICK Ras-related protein Rab-6A OS=Gallus gallus GN=RAB6A PE=2 SV=3
Length = 208
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 53/97 (54%), Gaps = 2/97 (2%)
Query: 88 FSSGYDTDSDLVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMA-GLNLINKTLMVQGA 145
S+G D + L K+ LG+ +GKTS + +++ + + + Q G++ ++KT+ ++
Sbjct: 1 MSAGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR 60
Query: 146 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTS 182
I +WD G R +P +D+ A + ++D+T+
Sbjct: 61 TIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITN 97
>sp|P35282|RAB21_MOUSE Ras-related protein Rab-21 OS=Mus musculus GN=Rab21 PE=1 SV=4
Length = 222
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 100 SLKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 157
S K+ LLG+ +GKTS V +Y N+ ++ + + + K L + G R+ +IWD G
Sbjct: 17 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQ 76
Query: 158 SRSFDHVPIACKDAVAILFMFDLT 181
R PI +D+ + ++D+T
Sbjct: 77 ERFHALGPIYYRDSNGAILVYDVT 100
>sp|Q54E92|RABG1_DICDI Ras-related protein RabG1 OS=Dictyostelium discoideum GN=rabG1 PE=3
SV=1
Length = 196
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 5/96 (5%)
Query: 95 DSDLVSLKISLLGDCQIGKTSFV---KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSI 151
DSD+ KI L+GD +GKTS + N QE S+ M ++ NK + + G I
Sbjct: 3 DSDV--FKILLIGDSAVGKTSLLLRFTDPNNFQETSVNMTSVDYKNKNITIDGRTFNLQI 60
Query: 152 WDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLN 187
WD G R + A +L +D+T + T N
Sbjct: 61 WDTAGQERFRTITSSFYRGAHGVLVCYDVTDQLTYN 96
>sp|Q5RBG1|RAB5B_PONAB Ras-related protein Rab-5B OS=Pongo abelii GN=RAB5B PE=2 SV=1
Length = 215
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
Query: 90 SGYDTDSDLVSLKISLLGDCQIGKTSFV-KYV-GNEQERSLQMAGLNLINKTLMVQGARI 147
+G S + K+ LLG+ +GK+S V ++V G E G + +++ + +
Sbjct: 10 NGQPQASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTV 69
Query: 148 AFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNR 188
F IWD G R P+ + A A + ++D+T++ T R
Sbjct: 70 KFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFAR 110
>sp|P61021|RAB5B_MOUSE Ras-related protein Rab-5B OS=Mus musculus GN=Rab5b PE=1 SV=1
Length = 215
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
Query: 90 SGYDTDSDLVSLKISLLGDCQIGKTSFV-KYV-GNEQERSLQMAGLNLINKTLMVQGARI 147
+G S + K+ LLG+ +GK+S V ++V G E G + +++ + +
Sbjct: 10 NGQPQASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTV 69
Query: 148 AFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNR 188
F IWD G R P+ + A A + ++D+T++ T R
Sbjct: 70 KFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFAR 110
>sp|P61020|RAB5B_HUMAN Ras-related protein Rab-5B OS=Homo sapiens GN=RAB5B PE=1 SV=1
Length = 215
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
Query: 90 SGYDTDSDLVSLKISLLGDCQIGKTSFV-KYV-GNEQERSLQMAGLNLINKTLMVQGARI 147
+G S + K+ LLG+ +GK+S V ++V G E G + +++ + +
Sbjct: 10 NGQPQASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTV 69
Query: 148 AFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNR 188
F IWD G R P+ + A A + ++D+T++ T R
Sbjct: 70 KFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFAR 110
>sp|P38555|YPT31_YEAST GTP-binding protein YPT31/YPT8 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=YPT31 PE=1 SV=3
Length = 223
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 3/105 (2%)
Query: 89 SSGYDTDSDLVSLKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGAR 146
S Y D DL+ KI L+GD +GK++ + ++ NE S G+ +TL + G R
Sbjct: 3 SEDYGYDYDLL-FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIDGKR 61
Query: 147 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNRFDH 191
I IWD G R + AV L ++D++ + +H
Sbjct: 62 IKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNH 106
>sp|Q6DHC1|RB18B_DANRE Ras-related protein Rab-18-B OS=Danio rerio GN=rab18b PE=2 SV=1
Length = 205
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 51/99 (51%), Gaps = 2/99 (2%)
Query: 95 DSDLVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIW 152
D L +LKI ++G+ +GK+S + ++ + + L G++ KT+ + G R +IW
Sbjct: 3 DDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTIAIDGNRAKLAIW 62
Query: 153 DVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNRFDH 191
D G R P + A ++ ++D+T R T + ++
Sbjct: 63 DTAGQERFRTLTPSYYRGAQGVILVYDVTKRDTFTKLEN 101
>sp|Q504M8|RAB26_MOUSE Ras-related protein Rab-26 OS=Mus musculus GN=Rab26 PE=1 SV=1
Length = 260
Score = 47.4 bits (111), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 58/125 (46%), Gaps = 7/125 (5%)
Query: 72 PAPDTMEAGLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVKYVGNEQERS---L 128
P P+ G + R S G D V+ K+ L+GD +GKT + + + +
Sbjct: 40 PGPEAPPNGPPQSIRP-SLGSTGDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFI 98
Query: 129 QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNR 188
G++ NK L V G ++ IWD G R +DA A+L ++D+T++ +
Sbjct: 99 STVGIDFRNKVLDVDGMKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNK---DS 155
Query: 189 FDHNQ 193
FD+ Q
Sbjct: 156 FDNIQ 160
>sp|Q8IZ41|RASEF_HUMAN Ras and EF-hand domain-containing protein OS=Homo sapiens GN=RASEF
PE=1 SV=1
Length = 740
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 53/123 (43%), Gaps = 13/123 (10%)
Query: 72 PAPDTMEAGLVELSRTFSSGYDTDSDLV-----------SLKISLLGDCQIGKTSFV-KY 119
P E +V SR S +DLV + KI L GD +GK+SF+ +
Sbjct: 502 PQGSVSEGSIVSSSRKPISALSPQTDLVDDNAKSFSSQKAYKIVLAGDAAVGKSSFLMRL 561
Query: 120 VGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 178
NE +E G++ KTL+V G R +WD G R + A +L ++
Sbjct: 562 CKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLY 621
Query: 179 DLT 181
D+T
Sbjct: 622 DVT 624
>sp|P35294|RAB19_MOUSE Ras-related protein Rab-19 OS=Mus musculus GN=Rab19 PE=2 SV=3
Length = 217
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 4/108 (3%)
Query: 88 FSSGYDTDSDLVS--LKISLLGDCQIGKTSFVKYV--GNEQERSLQMAGLNLINKTLMVQ 143
FSS T + V K+ L+GD +GKT V++ G E G++ ++L +
Sbjct: 3 FSSSSRTSDENVDYLFKVILIGDSNVGKTCVVQHFKSGVYSESQQNTIGVDFTVRSLEID 62
Query: 144 GARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNRFDH 191
G ++ +WD G R + A A + +DLT R T H
Sbjct: 63 GKKVKMQVWDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPH 110
>sp|Q40520|RB11C_TOBAC Ras-related protein Rab11C OS=Nicotiana tabacum GN=RAB11C PE=2 SV=1
Length = 222
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 7/108 (6%)
Query: 88 FSSGYDTDSDLVS--LKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQ 143
+SGY S + K+ L+GD +GKT + ++ NE S G+ +TL++Q
Sbjct: 1 MASGYGDASQKIDYVFKVVLIGDSAVGKTQILARFARNEFSLDSKATIGVEFQTRTLVIQ 60
Query: 144 GARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNRFDH 191
+ IWD G R + AV + ++D+T R T FDH
Sbjct: 61 HKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQT---FDH 105
>sp|P51147|RAB5C_CANFA Ras-related protein Rab-5C OS=Canis familiaris GN=RAB5C PE=2 SV=1
Length = 216
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 2/101 (1%)
Query: 90 SGYDTDSDLVSLKISLLGDCQIGKTSFV-KYV-GNEQERSLQMAGLNLINKTLMVQGARI 147
+G + + K+ LLG+ +GK+S V ++V G E G + +T+ + +
Sbjct: 11 NGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTV 70
Query: 148 AFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNR 188
F IWD G R P+ + A A + ++D+T+ T R
Sbjct: 71 KFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFAR 111
>sp|Q40194|RB11D_LOTJA Ras-related protein Rab11D OS=Lotus japonicus GN=RAB11D PE=2 SV=1
Length = 218
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 3/99 (3%)
Query: 91 GYDTDSDLVSL-KISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARI 147
GY TD + L K+ L+GD +GK++ + ++ NE S G+ KTL V +
Sbjct: 3 GYRTDDEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTLNVDAKVV 62
Query: 148 AFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTL 186
IWD G R + AV L ++D+T R T
Sbjct: 63 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATF 101
>sp|Q58DS9|RAB5C_BOVIN Ras-related protein Rab-5C OS=Bos taurus GN=RAB5C PE=2 SV=1
Length = 216
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 2/101 (1%)
Query: 90 SGYDTDSDLVSLKISLLGDCQIGKTSFV-KYV-GNEQERSLQMAGLNLINKTLMVQGARI 147
+G + + K+ LLG+ +GK+S V ++V G E G + +T+ + +
Sbjct: 11 NGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTV 70
Query: 148 AFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNR 188
F IWD G R P+ + A A + ++D+T+ T R
Sbjct: 71 KFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFAR 111
>sp|P61294|RAB6B_MOUSE Ras-related protein Rab-6B OS=Mus musculus GN=Rab6b PE=1 SV=1
Length = 208
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 55/106 (51%), Gaps = 5/106 (4%)
Query: 88 FSSGYDTDSDLVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMA-GLNLINKTLMVQGA 145
S+G D + L K+ LG+ +GKTS + +++ + + + Q G++ ++KT+ ++
Sbjct: 1 MSAGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR 60
Query: 146 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNRFDH 191
+ +WD G R +P +D+ + ++D+T+ LN F
Sbjct: 61 TVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN---LNSFQQ 103
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.136 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,186,877
Number of Sequences: 539616
Number of extensions: 2315547
Number of successful extensions: 8063
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 307
Number of HSP's that attempted gapping in prelim test: 7714
Number of HSP's gapped (non-prelim): 434
length of query: 193
length of database: 191,569,459
effective HSP length: 111
effective length of query: 82
effective length of database: 131,672,083
effective search space: 10797110806
effective search space used: 10797110806
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.9 bits)