Query 029430
Match_columns 193
No_of_seqs 196 out of 1631
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 12:47:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029430.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029430hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 100.0 2E-31 4.3E-36 213.3 10.2 96 98-193 7-104 (205)
2 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 3.3E-30 7.2E-35 206.1 8.7 101 93-193 15-117 (221)
3 KOG0092 GTPase Rab5/YPT51 and 100.0 8.8E-30 1.9E-34 203.1 10.3 96 98-193 3-100 (200)
4 KOG0080 GTPase Rab18, small G 100.0 6.2E-28 1.3E-32 188.1 10.3 96 98-193 9-106 (209)
5 KOG0078 GTP-binding protein SE 99.9 1.8E-27 3.8E-32 192.4 10.1 98 96-193 8-107 (207)
6 KOG0095 GTPase Rab30, small G 99.9 2.2E-27 4.8E-32 183.4 7.2 95 99-193 6-102 (213)
7 KOG0394 Ras-related GTPase [Ge 99.9 6.7E-27 1.4E-31 185.7 6.8 94 99-192 8-103 (210)
8 KOG0079 GTP-binding protein H- 99.9 4E-27 8.8E-32 181.5 5.1 94 100-193 8-103 (198)
9 KOG0098 GTPase Rab2, small G p 99.9 1.8E-26 3.9E-31 183.6 8.6 95 99-193 5-101 (216)
10 KOG0087 GTPase Rab11/YPT3, sma 99.9 1.6E-26 3.5E-31 186.8 8.4 96 98-193 12-109 (222)
11 KOG0088 GTPase Rab21, small G 99.9 2.3E-26 4.9E-31 179.2 5.1 97 97-193 10-108 (218)
12 KOG0086 GTPase Rab4, small G p 99.9 8.8E-26 1.9E-30 175.0 6.4 95 99-193 8-104 (214)
13 cd04120 Rab12 Rab12 subfamily. 99.9 5.1E-25 1.1E-29 179.5 10.3 93 101-193 1-95 (202)
14 KOG0093 GTPase Rab3, small G p 99.9 9.3E-25 2E-29 168.2 10.5 94 100-193 21-116 (193)
15 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.9 1.6E-24 3.4E-29 173.6 10.8 95 98-193 3-100 (182)
16 cd04133 Rop_like Rop subfamily 99.9 2.5E-24 5.4E-29 171.7 11.3 92 101-193 2-96 (176)
17 cd04128 Spg1 Spg1p. Spg1p (se 99.9 2.2E-24 4.8E-29 172.4 10.4 93 101-193 1-95 (182)
18 cd04121 Rab40 Rab40 subfamily. 99.9 2.2E-24 4.8E-29 173.9 10.4 95 99-193 5-101 (189)
19 KOG0091 GTPase Rab39, small G 99.9 2.2E-25 4.7E-30 174.4 3.8 96 98-193 6-104 (213)
20 cd04131 Rnd Rnd subfamily. Th 99.9 3.7E-24 8.1E-29 170.6 10.4 93 100-193 1-96 (178)
21 cd01875 RhoG RhoG subfamily. 99.9 4.8E-24 1E-28 171.3 10.7 93 100-193 3-98 (191)
22 cd04102 RabL3 RabL3 (Rab-like3 99.9 4.4E-24 9.6E-29 174.1 9.9 93 101-193 1-100 (202)
23 KOG0083 GTPase Rab26/Rab37, sm 99.9 5.7E-25 1.2E-29 167.3 3.3 90 104-193 1-93 (192)
24 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.9 2.4E-23 5.3E-28 173.1 11.5 95 98-193 11-108 (232)
25 cd01874 Cdc42 Cdc42 subfamily. 99.9 4.4E-23 9.6E-28 163.5 11.1 92 101-193 2-96 (175)
26 PLN03071 GTP-binding nuclear p 99.9 9E-23 1.9E-27 167.7 12.1 96 98-193 11-108 (219)
27 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.9 4.7E-23 1E-27 170.4 10.4 92 100-192 1-95 (222)
28 cd04107 Rab32_Rab38 Rab38/Rab3 99.9 7.5E-23 1.6E-27 165.1 11.3 93 101-193 1-96 (201)
29 cd04122 Rab14 Rab14 subfamily. 99.9 5.4E-23 1.2E-27 160.3 10.0 94 100-193 2-97 (166)
30 PLN00023 GTP-binding protein; 99.9 6.5E-23 1.4E-27 177.4 10.9 97 97-193 18-129 (334)
31 cd04108 Rab36_Rab34 Rab34/Rab3 99.9 8.3E-23 1.8E-27 161.1 10.0 92 102-193 2-95 (170)
32 cd04117 Rab15 Rab15 subfamily. 99.9 1.1E-22 2.3E-27 158.6 10.3 93 101-193 1-95 (161)
33 PF00071 Ras: Ras family; Int 99.9 7.7E-23 1.7E-27 158.0 7.9 92 102-193 1-94 (162)
34 cd04136 Rap_like Rap-like subf 99.9 2.3E-22 5E-27 155.0 10.3 93 100-193 1-95 (163)
35 cd04176 Rap2 Rap2 subgroup. T 99.9 2.8E-22 6.1E-27 155.2 10.7 93 100-193 1-95 (163)
36 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.9 3E-22 6.5E-27 158.2 10.4 92 100-192 2-95 (172)
37 cd04119 RJL RJL (RabJ-Like) su 99.9 2.4E-22 5.2E-27 154.9 9.5 93 101-193 1-95 (168)
38 cd01871 Rac1_like Rac1-like su 99.9 3.9E-22 8.6E-27 157.9 10.8 93 100-193 1-96 (174)
39 cd01865 Rab3 Rab3 subfamily. 99.9 4.2E-22 9.2E-27 155.2 10.1 93 101-193 2-96 (165)
40 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.9 5.4E-22 1.2E-26 154.2 10.4 94 100-193 2-97 (166)
41 cd01867 Rab8_Rab10_Rab13_like 99.9 4.6E-22 1E-26 155.3 9.9 94 100-193 3-98 (167)
42 cd04109 Rab28 Rab28 subfamily. 99.9 4.2E-22 9E-27 162.8 9.8 93 101-193 1-96 (215)
43 cd04110 Rab35 Rab35 subfamily. 99.9 6.4E-22 1.4E-26 159.7 10.6 94 100-193 6-101 (199)
44 cd04124 RabL2 RabL2 subfamily. 99.9 8.1E-22 1.8E-26 153.4 10.7 93 101-193 1-95 (161)
45 cd04127 Rab27A Rab27a subfamil 99.9 4.8E-22 1E-26 156.4 9.3 95 99-193 3-109 (180)
46 PTZ00369 Ras-like protein; Pro 99.9 9.1E-22 2E-26 157.4 10.9 94 99-193 4-99 (189)
47 cd04116 Rab9 Rab9 subfamily. 99.9 9.2E-22 2E-26 153.5 10.5 95 99-193 4-100 (170)
48 KOG0081 GTPase Rab27, small G 99.9 2E-23 4.3E-28 162.9 1.0 95 99-193 8-113 (219)
49 cd04111 Rab39 Rab39 subfamily. 99.9 6.9E-22 1.5E-26 161.5 10.1 94 100-193 2-98 (211)
50 cd04175 Rap1 Rap1 subgroup. T 99.9 1E-21 2.2E-26 152.4 10.1 93 100-193 1-95 (164)
51 cd04125 RabA_like RabA-like su 99.9 9.7E-22 2.1E-26 156.6 10.2 93 101-193 1-95 (188)
52 cd00877 Ran Ran (Ras-related n 99.9 1.7E-21 3.6E-26 152.9 11.2 93 101-193 1-95 (166)
53 KOG0393 Ras-related small GTPa 99.9 5.7E-22 1.2E-26 160.4 8.2 94 99-193 3-100 (198)
54 cd04118 Rab24 Rab24 subfamily. 99.9 2.1E-21 4.6E-26 154.9 11.0 93 101-193 1-96 (193)
55 cd04143 Rhes_like Rhes_like su 99.9 1.1E-21 2.4E-26 164.4 9.8 92 101-193 1-94 (247)
56 PLN03110 Rab GTPase; Provision 99.9 2.4E-21 5.1E-26 158.7 11.0 95 99-193 11-107 (216)
57 cd04134 Rho3 Rho3 subfamily. 99.9 2.4E-21 5.1E-26 155.1 10.7 92 101-193 1-95 (189)
58 cd04115 Rab33B_Rab33A Rab33B/R 99.9 2.2E-21 4.7E-26 152.1 10.0 94 100-193 2-98 (170)
59 cd04106 Rab23_lke Rab23-like s 99.9 1.8E-21 4E-26 150.0 9.3 93 101-193 1-97 (162)
60 KOG1673 Ras GTPases [General f 99.9 1.2E-21 2.6E-26 152.3 8.2 98 95-192 15-114 (205)
61 cd01892 Miro2 Miro2 subfamily. 99.9 4.5E-21 9.8E-26 150.9 11.5 95 99-193 3-100 (169)
62 cd04138 H_N_K_Ras_like H-Ras/N 99.9 3E-21 6.5E-26 148.0 10.2 93 100-193 1-95 (162)
63 smart00176 RAN Ran (Ras-relate 99.9 1.9E-21 4.1E-26 158.2 9.4 88 106-193 1-90 (200)
64 cd01864 Rab19 Rab19 subfamily. 99.9 2.3E-21 5.1E-26 150.7 9.4 95 99-193 2-98 (165)
65 cd04113 Rab4 Rab4 subfamily. 99.9 3.3E-21 7.2E-26 148.9 9.9 93 101-193 1-95 (161)
66 KOG0097 GTPase Rab14, small G 99.9 7.7E-22 1.7E-26 151.6 5.9 95 99-193 10-106 (215)
67 cd01868 Rab11_like Rab11-like. 99.8 3.8E-21 8.3E-26 149.1 9.7 94 100-193 3-98 (165)
68 cd04103 Centaurin_gamma Centau 99.8 5.3E-21 1.2E-25 149.5 10.5 87 101-193 1-88 (158)
69 cd04130 Wrch_1 Wrch-1 subfamil 99.8 6E-21 1.3E-25 150.0 10.8 92 101-193 1-95 (173)
70 cd01866 Rab2 Rab2 subfamily. 99.8 5.3E-21 1.1E-25 149.6 10.1 94 100-193 4-99 (168)
71 cd04144 Ras2 Ras2 subfamily. 99.8 3E-21 6.6E-26 154.5 8.9 91 102-193 1-93 (190)
72 cd04112 Rab26 Rab26 subfamily. 99.8 4.9E-21 1.1E-25 153.4 9.8 93 101-193 1-96 (191)
73 cd04132 Rho4_like Rho4-like su 99.8 8.1E-21 1.8E-25 150.6 9.8 92 101-193 1-96 (187)
74 cd04126 Rab20 Rab20 subfamily. 99.8 9.5E-21 2.1E-25 156.4 10.2 89 101-193 1-90 (220)
75 cd04101 RabL4 RabL4 (Rab-like4 99.8 8E-21 1.7E-25 147.0 9.0 93 101-193 1-98 (164)
76 cd01861 Rab6 Rab6 subfamily. 99.8 1.1E-20 2.4E-25 145.5 9.7 93 101-193 1-95 (161)
77 PLN03118 Rab family protein; P 99.8 2.7E-20 5.9E-25 151.4 12.1 93 99-191 13-106 (211)
78 smart00173 RAS Ras subfamily o 99.8 1.9E-20 4.1E-25 144.9 10.3 91 101-192 1-93 (164)
79 cd04140 ARHI_like ARHI subfami 99.8 2.3E-20 5E-25 145.4 10.5 92 101-193 2-95 (165)
80 cd01860 Rab5_related Rab5-rela 99.8 2.3E-20 5E-25 144.0 9.8 94 100-193 1-96 (163)
81 KOG0395 Ras-related GTPase [Ge 99.8 1.6E-20 3.5E-25 152.5 9.3 93 99-192 2-96 (196)
82 PLN03108 Rab family protein; P 99.8 2.1E-20 4.6E-25 152.4 9.9 94 100-193 6-101 (210)
83 cd01873 RhoBTB RhoBTB subfamil 99.8 2.6E-20 5.5E-25 150.9 10.1 92 100-193 2-111 (195)
84 cd04145 M_R_Ras_like M-Ras/R-R 99.8 3.9E-20 8.4E-25 142.7 10.5 93 100-193 2-96 (164)
85 smart00174 RHO Rho (Ras homolo 99.8 3.8E-20 8.2E-25 144.7 10.5 90 103-193 1-93 (174)
86 PTZ00132 GTP-binding nuclear p 99.8 7.4E-20 1.6E-24 149.1 11.3 97 97-193 6-104 (215)
87 cd04150 Arf1_5_like Arf1-Arf5- 99.8 3.3E-20 7.2E-25 144.5 8.7 89 101-193 1-90 (159)
88 smart00177 ARF ARF-like small 99.8 3.5E-20 7.5E-25 146.7 8.7 90 100-193 13-103 (175)
89 cd04142 RRP22 RRP22 subfamily. 99.8 9.1E-20 2E-24 147.8 11.1 93 101-193 1-103 (198)
90 smart00175 RAB Rab subfamily o 99.8 6E-20 1.3E-24 141.4 9.6 93 101-193 1-95 (164)
91 cd04177 RSR1 RSR1 subgroup. R 99.8 1.3E-19 2.9E-24 141.5 10.9 92 100-192 1-94 (168)
92 cd01862 Rab7 Rab7 subfamily. 99.8 1.1E-19 2.5E-24 141.1 10.4 92 101-192 1-94 (172)
93 cd01870 RhoA_like RhoA-like su 99.8 1.3E-19 2.7E-24 141.8 10.3 91 101-192 2-95 (175)
94 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.8 8.3E-20 1.8E-24 145.5 9.1 95 99-193 2-98 (183)
95 cd04149 Arf6 Arf6 subfamily. 99.8 6.3E-20 1.4E-24 144.4 8.0 91 99-193 8-99 (168)
96 PLN00223 ADP-ribosylation fact 99.8 8E-20 1.7E-24 145.8 8.6 91 99-193 16-107 (181)
97 cd01863 Rab18 Rab18 subfamily. 99.8 2.2E-19 4.7E-24 138.5 10.5 93 101-193 1-95 (161)
98 cd04135 Tc10 TC10 subfamily. 99.8 2.8E-19 6E-24 139.7 11.0 91 101-192 1-94 (174)
99 cd04148 RGK RGK subfamily. Th 99.8 2.5E-19 5.3E-24 147.5 10.2 91 101-193 1-95 (221)
100 cd04162 Arl9_Arfrp2_like Arl9/ 99.8 1.4E-19 2.9E-24 141.9 8.2 87 103-193 2-90 (164)
101 PTZ00133 ADP-ribosylation fact 99.8 1.6E-19 3.5E-24 144.0 8.7 90 100-193 17-107 (182)
102 cd04146 RERG_RasL11_like RERG/ 99.8 2.4E-19 5.3E-24 139.3 9.4 91 102-193 1-94 (165)
103 cd04114 Rab30 Rab30 subfamily. 99.8 5.7E-19 1.2E-23 137.2 10.4 95 99-193 6-102 (169)
104 cd04123 Rab21 Rab21 subfamily. 99.8 4.9E-19 1.1E-23 135.6 9.7 93 101-193 1-95 (162)
105 cd04158 ARD1 ARD1 subfamily. 99.8 5.3E-19 1.2E-23 138.7 9.6 88 102-193 1-89 (169)
106 cd04147 Ras_dva Ras-dva subfam 99.8 8E-19 1.7E-23 141.4 9.3 91 102-193 1-93 (198)
107 KOG4252 GTP-binding protein [S 99.8 1.4E-20 3E-25 149.5 -1.4 94 99-192 19-114 (246)
108 cd00154 Rab Rab family. Rab G 99.8 1.9E-18 4E-23 130.9 9.2 93 101-193 1-95 (159)
109 COG1100 GTPase SAR1 and relate 99.8 9.3E-19 2E-23 141.9 7.9 94 100-193 5-101 (219)
110 cd01893 Miro1 Miro1 subfamily. 99.8 2.4E-18 5.2E-23 134.3 9.4 91 101-192 1-93 (166)
111 cd04154 Arl2 Arl2 subfamily. 99.8 3E-18 6.5E-23 134.6 9.1 91 99-193 13-104 (173)
112 cd04139 RalA_RalB RalA/RalB su 99.8 4.7E-18 1E-22 130.6 9.8 92 101-193 1-94 (164)
113 PF08477 Miro: Miro-like prote 99.8 2.9E-18 6.2E-23 126.4 7.9 91 102-192 1-95 (119)
114 cd00157 Rho Rho (Ras homology) 99.8 9.6E-18 2.1E-22 130.1 11.2 89 101-190 1-91 (171)
115 cd04161 Arl2l1_Arl13_like Arl2 99.7 3.4E-18 7.4E-23 134.1 8.3 87 102-193 1-89 (167)
116 cd04129 Rho2 Rho2 subfamily. 99.7 1.9E-17 4E-22 132.2 10.9 93 100-193 1-96 (187)
117 cd00876 Ras Ras family. The R 99.7 9.7E-18 2.1E-22 128.1 8.9 90 102-192 1-92 (160)
118 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.7 1.2E-17 2.6E-22 131.8 8.9 90 100-193 15-105 (174)
119 cd04156 ARLTS1 ARLTS1 subfamil 99.7 1E-17 2.3E-22 128.9 8.3 89 102-193 1-90 (160)
120 cd04157 Arl6 Arl6 subfamily. 99.7 1.2E-17 2.6E-22 128.5 8.4 88 102-193 1-91 (162)
121 cd04137 RheB Rheb (Ras Homolog 99.7 2.1E-17 4.6E-22 130.0 9.6 91 101-192 2-94 (180)
122 cd04151 Arl1 Arl1 subfamily. 99.7 1.3E-17 2.7E-22 128.9 6.9 87 102-192 1-88 (158)
123 KOG0070 GTP-binding ADP-ribosy 99.7 2.7E-17 5.8E-22 130.8 8.8 92 96-191 13-105 (181)
124 cd00878 Arf_Arl Arf (ADP-ribos 99.7 5.5E-17 1.2E-21 124.8 8.8 88 102-193 1-89 (158)
125 smart00178 SAR Sar1p-like memb 99.7 7.9E-17 1.7E-21 128.5 8.4 91 99-193 16-107 (184)
126 cd00879 Sar1 Sar1 subfamily. 99.7 1.2E-16 2.7E-21 126.9 8.2 91 99-193 18-109 (190)
127 cd04159 Arl10_like Arl10-like 99.7 1.9E-16 4.1E-21 120.0 8.2 87 102-192 1-89 (159)
128 PF00025 Arf: ADP-ribosylation 99.7 2.8E-16 6.1E-21 124.8 8.7 90 98-191 12-102 (175)
129 KOG0096 GTPase Ran/TC4/GSP1 (n 99.7 2.4E-16 5.3E-21 126.0 7.8 95 98-192 8-104 (216)
130 cd04160 Arfrp1 Arfrp1 subfamil 99.7 3.3E-16 7.2E-21 121.3 8.3 88 102-193 1-96 (167)
131 KOG0073 GTP-binding ADP-ribosy 99.6 1.9E-15 4E-20 118.5 9.0 88 99-190 15-103 (185)
132 cd04155 Arl3 Arl3 subfamily. 99.6 2.5E-15 5.5E-20 117.2 8.9 89 100-192 14-103 (173)
133 cd01890 LepA LepA subfamily. 99.6 2E-15 4.4E-20 118.3 7.6 91 102-192 2-112 (179)
134 KOG0071 GTP-binding ADP-ribosy 99.6 3.1E-15 6.6E-20 114.8 8.1 89 99-191 16-105 (180)
135 TIGR00231 small_GTP small GTP- 99.6 9.1E-15 2E-19 109.7 9.5 91 100-190 1-94 (161)
136 KOG4423 GTP-binding protein-li 99.6 1.8E-17 3.9E-22 132.3 -6.1 97 97-193 22-121 (229)
137 cd04105 SR_beta Signal recogni 99.6 8.9E-15 1.9E-19 119.0 7.5 92 102-193 2-96 (203)
138 PTZ00099 rab6; Provisional 99.6 1.1E-14 2.4E-19 116.1 7.7 73 121-193 2-75 (176)
139 cd04171 SelB SelB subfamily. 99.5 4.2E-14 9.1E-19 108.5 7.7 87 102-189 2-96 (164)
140 cd01891 TypA_BipA TypA (tyrosi 99.5 1.7E-14 3.6E-19 115.7 5.3 83 101-183 3-101 (194)
141 KOG0074 GTP-binding ADP-ribosy 99.5 2.1E-13 4.6E-18 104.9 9.8 91 98-191 15-106 (185)
142 TIGR02528 EutP ethanolamine ut 99.5 1.3E-14 2.8E-19 110.0 2.6 73 102-188 2-80 (142)
143 cd01887 IF2_eIF5B IF2/eIF5B (i 99.4 2.7E-13 5.9E-18 104.7 7.6 88 102-189 2-95 (168)
144 KOG3883 Ras family small GTPas 99.4 7.7E-13 1.7E-17 103.0 8.5 90 100-190 9-104 (198)
145 cd00882 Ras_like_GTPase Ras-li 99.4 7.1E-13 1.5E-17 97.8 8.0 87 105-192 1-90 (157)
146 TIGR00450 mnmE_trmE_thdF tRNA 99.4 1.1E-12 2.3E-17 118.6 9.7 89 99-189 202-301 (442)
147 KOG0075 GTP-binding ADP-ribosy 99.4 2.4E-13 5.2E-18 105.2 4.7 87 99-189 19-107 (186)
148 cd01898 Obg Obg subfamily. Th 99.4 8.2E-13 1.8E-17 102.3 7.6 90 102-192 2-101 (170)
149 cd01897 NOG NOG1 is a nucleola 99.4 2.4E-12 5.1E-17 99.7 8.6 87 102-192 2-103 (168)
150 cd01879 FeoB Ferrous iron tran 99.4 2.2E-12 4.8E-17 98.5 8.1 82 105-188 1-92 (158)
151 cd04164 trmE TrmE (MnmE, ThdF, 99.4 7.2E-12 1.6E-16 95.0 10.2 90 101-192 2-102 (157)
152 cd01878 HflX HflX subfamily. 99.3 2.1E-12 4.6E-17 103.9 6.7 90 100-192 41-142 (204)
153 PRK05291 trmE tRNA modificatio 99.3 1E-11 2.2E-16 112.4 9.6 91 100-192 215-316 (449)
154 PRK04213 GTP-binding protein; 99.3 1.2E-12 2.6E-17 105.0 3.0 78 99-182 8-102 (201)
155 TIGR01393 lepA GTP-binding pro 99.3 6.2E-12 1.3E-16 117.4 7.6 92 101-192 4-115 (595)
156 PRK03003 GTP-binding protein D 99.3 8E-12 1.7E-16 113.6 7.8 84 101-186 39-133 (472)
157 TIGR03156 GTP_HflX GTP-binding 99.3 8.9E-12 1.9E-16 109.6 7.2 92 100-192 189-290 (351)
158 PRK03003 GTP-binding protein D 99.3 1E-11 2.2E-16 112.9 7.8 89 100-190 211-313 (472)
159 PRK15494 era GTPase Era; Provi 99.2 4.2E-11 9.1E-16 104.8 10.2 89 98-190 50-149 (339)
160 cd04167 Snu114p Snu114p subfam 99.2 2.5E-11 5.5E-16 99.0 7.1 86 102-187 2-111 (213)
161 PRK00093 GTP-binding protein D 99.2 3.4E-11 7.4E-16 107.9 8.4 84 101-186 2-96 (435)
162 cd01895 EngA2 EngA2 subfamily. 99.2 9.1E-11 2E-15 90.1 9.0 88 100-189 2-103 (174)
163 cd01894 EngA1 EngA1 subfamily. 99.2 5.7E-11 1.2E-15 90.2 7.5 82 104-187 1-93 (157)
164 TIGR03598 GTPase_YsxC ribosome 99.2 4.9E-11 1.1E-15 94.4 6.7 89 98-189 16-119 (179)
165 cd01881 Obg_like The Obg-like 99.2 6.1E-11 1.3E-15 92.0 7.1 84 105-192 1-102 (176)
166 KOG0076 GTP-binding ADP-ribosy 99.2 1.8E-11 4E-16 96.9 3.8 88 99-190 16-112 (197)
167 cd01889 SelB_euk SelB subfamil 99.2 4.8E-11 1E-15 95.5 6.0 85 101-185 1-106 (192)
168 TIGR00487 IF-2 translation ini 99.2 2E-10 4.4E-15 107.1 10.5 91 99-190 86-181 (587)
169 KOG0072 GTP-binding ADP-ribosy 99.1 3.6E-11 7.9E-16 92.9 4.5 85 99-187 17-102 (182)
170 cd00881 GTP_translation_factor 99.1 7.1E-11 1.5E-15 92.5 5.7 84 102-187 1-102 (189)
171 TIGR03594 GTPase_EngA ribosome 99.1 2.9E-10 6.2E-15 101.6 10.2 90 99-190 171-274 (429)
172 PRK00454 engB GTP-binding prot 99.1 9.8E-11 2.1E-15 93.1 6.4 85 99-186 23-122 (196)
173 PRK11058 GTPase HflX; Provisio 99.1 1.9E-10 4.1E-15 103.6 8.7 90 101-191 198-297 (426)
174 cd01896 DRG The developmentall 99.1 3.8E-10 8.1E-15 93.8 9.6 86 102-189 2-97 (233)
175 KOG1707 Predicted Ras related/ 99.1 1.5E-10 3.4E-15 105.7 6.7 95 98-193 7-103 (625)
176 PRK05306 infB translation init 99.1 7E-10 1.5E-14 106.3 10.5 91 98-190 288-383 (787)
177 smart00010 small_GTPase Small 99.1 2.3E-10 5E-15 83.9 5.7 62 101-189 1-65 (124)
178 cd04163 Era Era subfamily. Er 99.1 4.6E-10 1E-14 85.1 7.5 82 100-183 3-95 (168)
179 TIGR00475 selB selenocysteine- 99.1 4.3E-10 9.3E-15 104.8 8.5 88 101-190 1-96 (581)
180 TIGR03594 GTPase_EngA ribosome 99.1 3E-10 6.6E-15 101.4 7.0 83 102-186 1-94 (429)
181 CHL00189 infB translation init 99.0 4.3E-10 9.3E-15 107.0 7.9 92 99-190 243-341 (742)
182 PRK05433 GTP-binding protein L 99.0 3E-10 6.5E-15 106.2 6.4 92 101-192 8-119 (600)
183 cd01850 CDC_Septin CDC/Septin. 99.0 9.5E-10 2.1E-14 93.7 9.0 60 99-158 3-74 (276)
184 cd04168 TetM_like Tet(M)-like 99.0 3.4E-10 7.4E-15 94.4 6.0 84 102-185 1-102 (237)
185 PRK09518 bifunctional cytidyla 99.0 4.5E-10 9.8E-15 106.9 7.3 89 100-190 450-552 (712)
186 TIGR00491 aIF-2 translation in 99.0 5.7E-10 1.2E-14 104.1 7.7 90 102-191 6-116 (590)
187 PRK10218 GTP-binding protein; 99.0 8.8E-10 1.9E-14 103.1 9.0 84 100-183 5-104 (607)
188 cd01876 YihA_EngB The YihA (En 99.0 4.5E-10 9.8E-15 85.5 5.8 79 102-183 1-94 (170)
189 TIGR00436 era GTP-binding prot 99.0 1.5E-09 3.2E-14 91.9 8.3 83 102-187 2-96 (270)
190 PRK15467 ethanolamine utilizat 99.0 4.6E-10 9.9E-15 87.7 4.8 73 102-186 3-80 (158)
191 PRK12299 obgE GTPase CgtA; Rev 99.0 1.9E-09 4.1E-14 94.3 9.0 89 102-193 160-259 (335)
192 TIGR02729 Obg_CgtA Obg family 99.0 1.8E-09 3.8E-14 94.3 8.7 91 101-192 158-260 (329)
193 KOG0077 Vesicle coat complex C 98.9 5.6E-10 1.2E-14 88.0 3.6 88 100-191 20-108 (193)
194 PRK09518 bifunctional cytidyla 98.9 4.1E-09 8.9E-14 100.4 10.0 83 99-183 274-367 (712)
195 PF04670 Gtr1_RagA: Gtr1/RagA 98.9 3.1E-09 6.6E-14 88.6 7.6 85 102-189 1-95 (232)
196 cd00880 Era_like Era (E. coli 98.9 4.8E-09 1E-13 78.3 7.7 84 105-189 1-94 (163)
197 PRK04004 translation initiatio 98.9 3.2E-09 6.9E-14 99.1 8.1 92 100-191 6-118 (586)
198 TIGR00483 EF-1_alpha translati 98.9 2.6E-09 5.6E-14 96.0 6.5 88 97-186 4-124 (426)
199 cd01899 Ygr210 Ygr210 subfamil 98.9 3.1E-09 6.8E-14 92.4 6.7 80 103-182 1-111 (318)
200 PRK00093 GTP-binding protein D 98.9 1.2E-08 2.6E-13 91.5 10.6 89 99-189 172-274 (435)
201 cd04169 RF3 RF3 subfamily. Pe 98.9 4.1E-09 8.9E-14 89.4 7.0 83 101-183 3-107 (267)
202 PF01926 MMR_HSR1: 50S ribosom 98.9 2.5E-08 5.4E-13 73.3 9.9 89 102-192 1-103 (116)
203 cd01885 EF2 EF2 (for archaea a 98.8 8.3E-09 1.8E-13 85.4 7.3 87 102-188 2-114 (222)
204 PRK13351 elongation factor G; 98.8 4.3E-09 9.3E-14 99.8 5.2 89 100-192 8-118 (687)
205 PRK00089 era GTPase Era; Revie 98.8 2.7E-08 5.9E-13 84.7 9.3 81 99-182 4-96 (292)
206 PRK12297 obgE GTPase CgtA; Rev 98.8 2.7E-08 5.9E-13 89.6 9.3 88 102-192 160-261 (424)
207 TIGR00437 feoB ferrous iron tr 98.8 3.6E-08 7.8E-13 92.2 9.5 76 107-184 1-86 (591)
208 cd04104 p47_IIGP_like p47 (47- 98.8 3.2E-08 7E-13 79.8 8.0 79 100-178 1-88 (197)
209 cd04170 EF-G_bact Elongation f 98.7 1.1E-08 2.5E-13 86.2 5.1 84 102-187 1-104 (268)
210 COG2229 Predicted GTPase [Gene 98.7 2.8E-08 6.2E-13 79.4 7.0 88 96-186 6-107 (187)
211 cd04166 CysN_ATPS CysN_ATPS su 98.7 1.2E-08 2.6E-13 83.0 4.8 80 102-183 1-113 (208)
212 TIGR01394 TypA_BipA GTP-bindin 98.7 1.4E-08 3E-13 95.0 5.6 81 102-182 3-99 (594)
213 cd01888 eIF2_gamma eIF2-gamma 98.7 3.1E-08 6.7E-13 80.3 6.5 46 147-192 83-132 (203)
214 PRK09554 feoB ferrous iron tra 98.7 7.1E-08 1.5E-12 92.6 9.7 85 100-185 3-100 (772)
215 PRK00741 prfC peptide chain re 98.7 2.7E-08 5.8E-13 91.9 6.3 84 100-183 10-115 (526)
216 PRK12317 elongation factor 1-a 98.7 6.1E-08 1.3E-12 87.0 8.4 82 99-182 5-119 (425)
217 TIGR00490 aEF-2 translation el 98.7 3.2E-08 7E-13 94.4 6.9 83 100-182 19-121 (720)
218 PRK09602 translation-associate 98.7 1.2E-07 2.5E-12 84.9 9.2 81 101-181 2-113 (396)
219 PRK12296 obgE GTPase CgtA; Rev 98.7 7.5E-08 1.6E-12 88.2 7.9 80 101-182 160-248 (500)
220 TIGR00503 prfC peptide chain r 98.6 6.8E-08 1.5E-12 89.3 7.2 85 99-183 10-116 (527)
221 PF09439 SRPRB: Signal recogni 98.6 2E-08 4.4E-13 80.7 2.0 86 102-190 5-96 (181)
222 COG0486 ThdF Predicted GTPase 98.6 2.7E-07 6E-12 83.0 9.3 83 99-183 216-309 (454)
223 TIGR00991 3a0901s02IAP34 GTP-b 98.5 3.1E-07 6.8E-12 79.5 8.1 83 97-181 35-129 (313)
224 PF02421 FeoB_N: Ferrous iron 98.5 7E-07 1.5E-11 70.2 9.2 83 101-185 1-93 (156)
225 PRK10512 selenocysteinyl-tRNA- 98.5 3.2E-07 7E-12 86.2 8.0 84 102-189 2-96 (614)
226 TIGR00485 EF-Tu translation el 98.5 3.7E-07 8.1E-12 81.3 7.8 92 98-189 10-120 (394)
227 cd01883 EF1_alpha Eukaryotic e 98.5 2.8E-07 6.1E-12 75.6 6.0 80 102-183 1-113 (219)
228 TIGR03680 eif2g_arch translati 98.5 2.2E-07 4.7E-12 83.2 5.8 92 99-190 3-127 (406)
229 PF10662 PduV-EutP: Ethanolami 98.4 2.4E-07 5.1E-12 71.9 4.5 71 102-185 3-78 (143)
230 KOG0705 GTPase-activating prot 98.4 2.5E-07 5.3E-12 84.7 5.3 95 91-191 21-116 (749)
231 PRK04000 translation initiatio 98.4 4.1E-07 8.8E-12 81.7 6.0 93 98-190 7-132 (411)
232 cd01857 HSR1_MMR1 HSR1/MMR1. 98.4 5.5E-07 1.2E-11 68.8 5.9 53 102-157 85-138 (141)
233 PRK12298 obgE GTPase CgtA; Rev 98.4 7.8E-07 1.7E-11 79.4 7.2 88 102-192 161-262 (390)
234 cd01886 EF-G Elongation factor 98.4 5.6E-07 1.2E-11 76.5 5.8 80 102-183 1-100 (270)
235 PF00009 GTP_EFTU: Elongation 98.4 1.6E-07 3.6E-12 74.9 2.1 84 100-183 3-106 (188)
236 TIGR00484 EF-G translation elo 98.4 8.3E-07 1.8E-11 84.4 6.8 85 100-186 10-114 (689)
237 cd01884 EF_Tu EF-Tu subfamily. 98.3 1.4E-06 3.1E-11 70.6 6.2 83 100-182 2-100 (195)
238 cd01853 Toc34_like Toc34-like 98.3 5.7E-06 1.2E-10 69.7 9.4 81 98-182 29-126 (249)
239 cd01859 MJ1464 MJ1464. This f 98.3 2.2E-06 4.7E-11 66.2 6.2 54 100-156 101-155 (156)
240 cd01852 AIG1 AIG1 (avrRpt2-ind 98.2 9.6E-06 2.1E-10 65.1 9.7 78 101-182 1-95 (196)
241 PRK12735 elongation factor Tu; 98.2 2.9E-06 6.2E-11 75.8 7.2 85 98-182 10-110 (396)
242 PRK12736 elongation factor Tu; 98.2 3.2E-06 7E-11 75.4 7.5 85 98-182 10-110 (394)
243 COG1160 Predicted GTPases [Gen 98.2 4E-06 8.6E-11 75.4 7.9 80 101-182 4-95 (444)
244 COG1163 DRG Predicted GTPase [ 98.2 6.2E-06 1.3E-10 71.6 8.6 84 100-185 63-155 (365)
245 PLN03126 Elongation factor Tu; 98.2 3.1E-06 6.7E-11 77.5 6.7 87 97-183 78-180 (478)
246 cd04165 GTPBP1_like GTPBP1-lik 98.2 2.3E-06 5.1E-11 70.8 5.3 80 102-183 1-122 (224)
247 cd00066 G-alpha G protein alph 98.2 6E-06 1.3E-10 71.7 7.9 38 146-183 160-197 (317)
248 cd01856 YlqF YlqF. Proteins o 98.2 3.8E-06 8.1E-11 66.2 6.0 56 99-157 114-170 (171)
249 PLN00043 elongation factor 1-a 98.2 2.6E-06 5.7E-11 77.3 5.7 85 98-182 5-120 (447)
250 KOG1191 Mitochondrial GTPase [ 98.2 5.6E-06 1.2E-10 75.1 7.5 79 100-180 268-358 (531)
251 TIGR02034 CysN sulfate adenyly 98.1 3.8E-06 8.1E-11 75.3 5.2 80 101-182 1-115 (406)
252 KOG3886 GTP-binding protein [S 98.1 1.2E-06 2.5E-11 73.0 1.7 82 100-184 4-95 (295)
253 PRK12740 elongation factor G; 98.1 5E-06 1.1E-10 78.8 6.1 83 106-190 1-103 (668)
254 PRK05124 cysN sulfate adenylyl 98.1 7.2E-06 1.6E-10 75.0 6.8 83 98-182 25-142 (474)
255 PF00735 Septin: Septin; Inte 98.1 1.3E-05 2.8E-10 68.7 7.7 59 99-157 3-73 (281)
256 KOG1423 Ras-like GTPase ERA [C 98.1 2.4E-05 5.3E-10 67.6 9.3 86 95-183 67-168 (379)
257 COG1160 Predicted GTPases [Gen 98.1 2E-05 4.4E-10 71.0 9.1 88 99-188 177-278 (444)
258 PF05783 DLIC: Dynein light in 98.1 1.2E-05 2.6E-10 73.4 7.6 92 100-193 25-124 (472)
259 COG3596 Predicted GTPase [Gene 98.0 3.5E-06 7.5E-11 71.7 3.5 85 97-184 36-131 (296)
260 CHL00071 tufA elongation facto 98.0 1.1E-05 2.4E-10 72.4 6.7 85 98-182 10-110 (409)
261 PF04548 AIG1: AIG1 family; I 98.0 4.1E-05 9E-10 62.6 9.2 79 101-181 1-94 (212)
262 KOG0090 Signal recognition par 98.0 6.6E-06 1.4E-10 67.6 3.9 76 102-181 40-119 (238)
263 KOG3905 Dynein light intermedi 98.0 1.7E-05 3.8E-10 69.1 6.6 92 100-193 52-151 (473)
264 PTZ00258 GTP-binding protein; 98.0 2.8E-05 6.2E-10 69.4 8.0 84 98-181 19-126 (390)
265 KOG1707 Predicted Ras related/ 98.0 3.9E-05 8.5E-10 70.9 8.9 92 97-190 422-515 (625)
266 PTZ00141 elongation factor 1- 98.0 2.3E-05 4.9E-10 71.2 7.3 85 98-182 5-120 (446)
267 cd01900 YchF YchF subfamily. 97.9 1.4E-05 3.1E-10 68.2 5.1 79 103-181 1-103 (274)
268 PRK00049 elongation factor Tu; 97.9 2.9E-05 6.3E-10 69.4 7.1 85 98-182 10-110 (396)
269 PRK09601 GTP-binding protein Y 97.9 7.1E-05 1.5E-09 66.3 9.3 81 101-181 3-107 (364)
270 PRK05506 bifunctional sulfate 97.9 2.3E-05 4.9E-10 74.0 6.2 82 99-182 23-139 (632)
271 PRK12739 elongation factor G; 97.9 2.5E-05 5.3E-10 74.5 6.5 82 100-183 8-109 (691)
272 COG1159 Era GTPase [General fu 97.9 0.00011 2.4E-09 63.1 9.4 82 98-182 4-97 (298)
273 cd01858 NGP_1 NGP-1. Autoanti 97.8 4.9E-05 1.1E-09 58.9 6.4 54 100-156 102-156 (157)
274 KOG4273 Uncharacterized conser 97.8 6.6E-05 1.4E-09 63.5 7.1 92 102-193 6-101 (418)
275 PLN03127 Elongation factor Tu; 97.8 8.8E-05 1.9E-09 67.5 8.4 83 98-182 59-159 (447)
276 COG1084 Predicted GTPase [Gene 97.8 7.6E-05 1.6E-09 64.9 7.3 81 100-184 168-261 (346)
277 TIGR03596 GTPase_YlqF ribosome 97.8 5.9E-05 1.3E-09 64.2 6.4 56 99-157 117-173 (276)
278 PRK09563 rbgA GTPase YlqF; Rev 97.7 9.6E-05 2.1E-09 63.2 7.0 57 99-158 120-177 (287)
279 cd04178 Nucleostemin_like Nucl 97.7 8.5E-05 1.8E-09 59.1 6.0 54 100-156 117-171 (172)
280 TIGR00993 3a0901s04IAP86 chlor 97.6 0.00035 7.5E-09 66.2 9.9 80 99-182 117-213 (763)
281 PRK00007 elongation factor G; 97.6 0.00013 2.9E-09 69.5 7.0 82 100-183 10-111 (693)
282 PTZ00416 elongation factor 2; 97.5 0.00015 3.3E-09 70.6 6.4 84 100-183 19-128 (836)
283 PLN00116 translation elongatio 97.5 0.0001 2.3E-09 71.8 4.8 84 100-183 19-134 (843)
284 PRK07560 elongation factor EF- 97.5 0.00015 3.2E-09 69.7 5.6 84 100-183 20-123 (731)
285 PRK14845 translation initiatio 97.5 0.0002 4.4E-09 70.9 6.0 42 149-190 528-572 (1049)
286 COG0370 FeoB Fe2+ transport sy 97.4 0.0008 1.7E-08 63.4 9.3 83 100-184 3-95 (653)
287 cd01855 YqeH YqeH. YqeH is an 97.4 0.00025 5.5E-09 56.5 4.9 53 101-156 128-189 (190)
288 KOG1547 Septin CDC10 and relat 97.4 0.00024 5.2E-09 59.8 4.7 60 99-158 45-115 (336)
289 PF05049 IIGP: Interferon-indu 97.3 0.00018 3.9E-09 64.0 3.4 79 99-179 34-123 (376)
290 COG1161 Predicted GTPases [Gen 97.3 0.00054 1.2E-08 59.8 5.9 58 98-158 130-188 (322)
291 PF00350 Dynamin_N: Dynamin fa 97.3 0.00063 1.4E-08 52.5 5.5 38 148-185 102-143 (168)
292 KOG1486 GTP-binding protein DR 97.2 0.0017 3.6E-08 55.2 8.3 83 100-185 62-154 (364)
293 COG5019 CDC3 Septin family pro 97.2 0.00078 1.7E-08 59.5 6.3 61 99-159 22-94 (373)
294 COG4917 EutP Ethanolamine util 97.2 0.00012 2.7E-09 55.6 1.0 73 102-185 3-79 (148)
295 cd01882 BMS1 Bms1. Bms1 is an 97.2 0.0012 2.7E-08 54.4 6.7 76 100-183 39-116 (225)
296 COG5256 TEF1 Translation elong 97.2 0.0012 2.6E-08 59.1 6.9 87 98-184 5-122 (428)
297 KOG2655 Septin family protein 97.1 0.001 2.3E-08 58.8 6.0 61 99-159 20-91 (366)
298 cd01851 GBP Guanylate-binding 97.1 0.0014 3.1E-08 54.1 6.6 81 101-182 8-103 (224)
299 smart00275 G_alpha G protein a 97.0 0.0015 3.1E-08 57.5 6.3 51 128-182 169-219 (342)
300 cd01849 YlqF_related_GTPase Yl 97.0 0.0017 3.6E-08 50.2 6.0 52 100-156 100-154 (155)
301 COG0218 Predicted GTPase [Gene 97.0 0.0016 3.5E-08 53.1 5.7 80 100-182 24-118 (200)
302 TIGR00092 GTP-binding protein 97.0 0.0028 6E-08 56.4 7.5 82 101-182 3-109 (368)
303 PRK12289 GTPase RsgA; Reviewed 97.0 0.0013 2.8E-08 58.2 5.3 57 102-161 174-238 (352)
304 PRK13768 GTPase; Provisional 96.9 0.00072 1.6E-08 56.9 2.9 37 148-184 98-142 (253)
305 TIGR00157 ribosome small subun 96.9 0.0017 3.6E-08 54.5 5.0 24 101-124 121-145 (245)
306 KOG3859 Septins (P-loop GTPase 96.9 0.0015 3.4E-08 56.1 4.8 58 99-156 41-104 (406)
307 PF03193 DUF258: Protein of un 96.8 0.001 2.2E-08 52.6 3.3 22 102-123 37-59 (161)
308 PRK12288 GTPase RsgA; Reviewed 96.8 0.0019 4.1E-08 57.0 4.9 56 103-161 208-271 (347)
309 KOG0082 G-protein alpha subuni 96.8 0.0029 6.3E-08 55.9 6.0 37 147-183 195-231 (354)
310 PF03266 NTPase_1: NTPase; In 96.7 0.0027 5.8E-08 50.4 4.9 51 102-154 1-52 (168)
311 COG0532 InfB Translation initi 96.7 0.0053 1.1E-07 56.5 7.3 90 102-191 7-102 (509)
312 cd01854 YjeQ_engC YjeQ/EngC. 96.7 0.0021 4.5E-08 55.1 4.2 58 101-161 162-227 (287)
313 KOG0468 U5 snRNP-specific prot 96.6 0.0062 1.3E-07 57.7 7.1 91 97-187 125-237 (971)
314 PF03029 ATP_bind_1: Conserved 96.6 0.00041 9E-09 58.0 -0.5 34 148-181 92-133 (238)
315 COG1618 Predicted nucleotide k 96.5 0.0062 1.3E-07 48.4 5.5 56 100-157 5-61 (179)
316 TIGR03597 GTPase_YqeH ribosome 96.4 0.0077 1.7E-07 53.3 5.9 54 101-159 155-216 (360)
317 PRK00098 GTPase RsgA; Reviewed 96.3 0.0042 9E-08 53.5 4.0 23 101-123 165-188 (298)
318 PRK13796 GTPase YqeH; Provisio 96.2 0.008 1.7E-07 53.3 5.4 55 101-158 161-221 (365)
319 COG2262 HflX GTPases [General 96.2 0.024 5.2E-07 50.9 8.2 90 100-190 192-291 (411)
320 COG0012 Predicted GTPase, prob 96.1 0.025 5.4E-07 50.2 7.9 82 100-183 2-110 (372)
321 KOG1489 Predicted GTP-binding 96.1 0.022 4.8E-07 49.8 7.0 86 103-190 199-297 (366)
322 COG4108 PrfC Peptide chain rel 96.0 0.012 2.6E-07 53.4 5.2 82 101-182 13-116 (528)
323 PF13207 AAA_17: AAA domain; P 95.8 0.0064 1.4E-07 44.4 2.2 21 102-122 1-22 (121)
324 PRK08118 topology modulation p 95.7 0.0078 1.7E-07 47.4 2.6 20 101-120 2-22 (167)
325 COG1116 TauB ABC-type nitrate/ 95.6 0.0078 1.7E-07 50.7 2.5 21 103-123 32-52 (248)
326 KOG1491 Predicted GTP-binding 95.6 0.048 1E-06 48.1 7.3 82 99-182 19-126 (391)
327 COG1125 OpuBA ABC-type proline 95.6 0.013 2.9E-07 49.9 3.8 22 103-124 30-51 (309)
328 PRK07261 topology modulation p 95.6 0.0084 1.8E-07 47.4 2.5 20 101-120 1-21 (171)
329 PF13671 AAA_33: AAA domain; P 95.6 0.0081 1.8E-07 45.0 2.2 18 103-120 2-20 (143)
330 COG1162 Predicted GTPases [Gen 95.6 0.013 2.8E-07 50.7 3.6 21 102-122 166-187 (301)
331 COG0480 FusA Translation elong 95.5 0.025 5.5E-07 54.2 5.7 83 100-182 10-111 (697)
332 smart00382 AAA ATPases associa 95.5 0.012 2.7E-07 42.2 2.7 25 101-125 3-28 (148)
333 COG0563 Adk Adenylate kinase a 95.4 0.011 2.3E-07 47.4 2.4 22 101-122 1-23 (178)
334 COG3839 MalK ABC-type sugar tr 95.4 0.01 2.2E-07 52.2 2.5 20 103-122 32-51 (338)
335 PF13521 AAA_28: AAA domain; P 95.4 0.0081 1.8E-07 46.5 1.6 21 102-122 1-22 (163)
336 KOG0462 Elongation factor-type 95.3 0.03 6.5E-07 52.1 5.2 82 101-182 61-160 (650)
337 smart00072 GuKc Guanylate kina 95.3 0.038 8.3E-07 43.9 5.3 21 103-123 5-26 (184)
338 PF00004 AAA: ATPase family as 95.3 0.013 2.7E-07 42.9 2.3 18 103-120 1-19 (132)
339 KOG1424 Predicted GTP-binding 95.3 0.024 5.1E-07 52.3 4.4 55 100-157 314-369 (562)
340 PF05729 NACHT: NACHT domain 95.3 0.012 2.6E-07 44.6 2.2 20 103-122 3-23 (166)
341 PF07728 AAA_5: AAA domain (dy 95.3 0.011 2.4E-07 44.4 1.9 18 103-120 2-20 (139)
342 PF13191 AAA_16: AAA ATPase do 95.2 0.011 2.4E-07 45.9 1.9 21 101-121 25-46 (185)
343 KOG0458 Elongation factor 1 al 95.2 0.092 2E-06 49.0 8.0 85 98-182 175-290 (603)
344 cd02042 ParA ParA and ParB of 95.1 0.024 5.2E-07 40.4 3.4 78 103-191 2-81 (104)
345 COG3842 PotA ABC-type spermidi 95.1 0.014 3E-07 51.7 2.4 20 103-122 34-53 (352)
346 PF13401 AAA_22: AAA domain; P 95.1 0.013 2.9E-07 43.1 1.9 22 102-123 6-28 (131)
347 KOG1145 Mitochondrial translat 95.1 0.05 1.1E-06 50.8 5.9 87 103-191 156-248 (683)
348 COG3638 ABC-type phosphate/pho 95.1 0.025 5.4E-07 47.6 3.6 21 102-122 32-52 (258)
349 PRK06217 hypothetical protein; 95.0 0.019 4.1E-07 45.6 2.7 21 101-121 2-23 (183)
350 cd00009 AAA The AAA+ (ATPases 94.8 0.021 4.5E-07 41.6 2.3 22 101-122 20-42 (151)
351 cd03233 ABC_PDR_domain1 The pl 94.8 0.051 1.1E-06 43.8 4.7 22 102-123 35-56 (202)
352 PRK13695 putative NTPase; Prov 94.8 0.022 4.8E-07 44.7 2.4 20 101-120 1-21 (174)
353 COG1126 GlnQ ABC-type polar am 94.7 0.024 5.2E-07 47.2 2.7 20 102-121 30-49 (240)
354 PRK14269 phosphate ABC transpo 94.7 0.05 1.1E-06 45.0 4.7 22 102-123 30-51 (246)
355 PRK14738 gmk guanylate kinase; 94.7 0.04 8.6E-07 44.7 4.0 24 99-122 12-36 (206)
356 PF13479 AAA_24: AAA domain 94.7 0.024 5.3E-07 46.3 2.6 20 100-119 3-23 (213)
357 PF00005 ABC_tran: ABC transpo 94.6 0.026 5.6E-07 42.0 2.5 23 102-124 13-35 (137)
358 PTZ00327 eukaryotic translatio 94.6 0.041 8.8E-07 50.4 4.1 85 98-182 32-152 (460)
359 cd03234 ABCG_White The White s 94.6 0.058 1.2E-06 44.1 4.6 23 102-124 35-57 (226)
360 PRK10418 nikD nickel transport 94.6 0.058 1.3E-06 44.9 4.7 23 102-124 31-53 (254)
361 PRK10078 ribose 1,5-bisphospho 94.5 0.029 6.2E-07 44.6 2.7 20 102-121 4-24 (186)
362 TIGR03263 guanyl_kin guanylate 94.5 0.028 6.1E-07 44.0 2.5 21 102-122 3-24 (180)
363 COG4525 TauB ABC-type taurine 94.5 0.026 5.7E-07 46.6 2.3 21 102-122 33-53 (259)
364 COG1217 TypA Predicted membran 94.5 0.1 2.3E-06 47.9 6.3 81 102-182 7-103 (603)
365 cd00071 GMPK Guanosine monopho 94.4 0.03 6.5E-07 42.6 2.4 20 103-122 2-22 (137)
366 TIGR01425 SRP54_euk signal rec 94.4 0.062 1.3E-06 48.8 4.8 21 100-120 100-121 (429)
367 cd01983 Fer4_NifH The Fer4_Nif 94.4 0.092 2E-06 35.7 4.7 67 103-182 2-70 (99)
368 PF13238 AAA_18: AAA domain; P 94.4 0.028 6.1E-07 40.8 2.2 20 103-122 1-21 (129)
369 TIGR00101 ureG urease accessor 94.4 0.032 6.9E-07 45.3 2.7 22 101-122 2-24 (199)
370 PF00448 SRP54: SRP54-type pro 94.4 0.026 5.7E-07 45.8 2.1 20 101-120 2-22 (196)
371 PF13555 AAA_29: P-loop contai 94.3 0.037 8.1E-07 36.9 2.4 19 102-120 25-44 (62)
372 PRK14737 gmk guanylate kinase; 94.3 0.032 6.9E-07 44.8 2.5 20 103-122 7-27 (186)
373 TIGR02322 phosphon_PhnN phosph 94.3 0.032 6.9E-07 43.7 2.3 20 102-121 3-23 (179)
374 KOG1532 GTPase XAB1, interacts 94.2 0.046 9.9E-07 47.2 3.2 23 99-121 18-41 (366)
375 PRK03839 putative kinase; Prov 94.2 0.035 7.7E-07 43.6 2.4 20 102-121 2-22 (180)
376 PF04665 Pox_A32: Poxvirus A32 94.2 0.036 7.8E-07 46.6 2.5 23 100-122 13-36 (241)
377 cd02019 NK Nucleoside/nucleoti 94.2 0.039 8.6E-07 36.9 2.3 19 103-121 2-21 (69)
378 TIGR00960 3a0501s02 Type II (G 94.1 0.041 8.8E-07 44.5 2.8 22 102-123 31-52 (216)
379 PRK09984 phosphonate/organopho 94.1 0.09 1.9E-06 43.9 4.8 23 102-124 32-54 (262)
380 PRK00300 gmk guanylate kinase; 94.0 0.037 8.1E-07 44.3 2.4 21 101-121 6-27 (205)
381 PRK14532 adenylate kinase; Pro 94.0 0.04 8.6E-07 43.6 2.5 21 101-121 1-22 (188)
382 TIGR03348 VI_IcmF type VI secr 94.0 0.084 1.8E-06 53.6 5.3 75 103-183 114-214 (1169)
383 KOG1954 Endocytosis/signaling 94.0 0.14 2.9E-06 46.0 5.9 79 102-182 60-193 (532)
384 PF03205 MobB: Molybdopterin g 94.0 0.035 7.5E-07 42.6 2.0 19 103-121 3-22 (140)
385 cd03213 ABCG_EPDR ABCG transpo 94.0 0.094 2E-06 42.0 4.6 22 102-123 37-58 (194)
386 TIGR03797 NHPM_micro_ABC2 NHPM 94.0 0.07 1.5E-06 50.8 4.5 23 102-124 481-503 (686)
387 cd00820 PEPCK_HprK Phosphoenol 94.0 0.042 9.2E-07 40.5 2.4 20 101-120 16-36 (107)
388 COG1136 SalX ABC-type antimicr 93.9 0.041 8.9E-07 45.8 2.5 21 102-122 33-53 (226)
389 PF01637 Arch_ATPase: Archaeal 93.9 0.036 7.8E-07 44.3 2.0 23 101-123 21-44 (234)
390 cd03292 ABC_FtsE_transporter F 93.9 0.048 1E-06 43.9 2.7 22 102-123 29-50 (214)
391 PRK08233 hypothetical protein; 93.9 0.043 9.4E-07 42.7 2.4 21 101-121 4-25 (182)
392 cd03257 ABC_NikE_OppD_transpor 93.8 0.049 1.1E-06 44.2 2.8 22 102-123 33-54 (228)
393 PRK14530 adenylate kinase; Pro 93.8 0.045 9.7E-07 44.5 2.5 20 101-120 4-24 (215)
394 TIGR01166 cbiO cobalt transpor 93.8 0.047 1E-06 43.3 2.5 22 102-123 20-41 (190)
395 TIGR00150 HI0065_YjeE ATPase, 93.8 0.11 2.4E-06 39.7 4.5 21 102-122 24-45 (133)
396 TIGR01360 aden_kin_iso1 adenyl 93.8 0.045 9.7E-07 42.8 2.4 19 102-120 5-24 (188)
397 PRK14238 phosphate transporter 93.8 0.095 2.1E-06 44.2 4.5 22 102-123 52-73 (271)
398 cd03265 ABC_DrrA DrrA is the A 93.8 0.051 1.1E-06 44.1 2.7 22 102-123 28-49 (220)
399 PRK02496 adk adenylate kinase; 93.8 0.051 1.1E-06 42.9 2.6 20 101-120 2-22 (184)
400 PF13173 AAA_14: AAA domain 93.8 0.042 9.1E-07 41.0 2.0 22 103-124 5-27 (128)
401 TIGR02868 CydC thiol reductant 93.7 0.061 1.3E-06 49.5 3.4 23 102-124 363-385 (529)
402 cd03266 ABC_NatA_sodium_export 93.7 0.054 1.2E-06 43.8 2.7 22 102-123 33-54 (218)
403 cd03235 ABC_Metallic_Cations A 93.7 0.057 1.2E-06 43.6 2.8 22 102-123 27-48 (213)
404 cd03214 ABC_Iron-Siderophores_ 93.6 0.058 1.2E-06 42.6 2.7 22 102-123 27-48 (180)
405 PRK14531 adenylate kinase; Pro 93.6 0.053 1.1E-06 43.0 2.5 21 100-120 2-23 (183)
406 TIGR03015 pepcterm_ATPase puta 93.5 0.049 1.1E-06 45.2 2.3 21 102-122 45-66 (269)
407 PRK13949 shikimate kinase; Pro 93.5 0.056 1.2E-06 42.6 2.5 19 102-120 3-22 (169)
408 PRK13540 cytochrome c biogenes 93.5 0.06 1.3E-06 43.2 2.7 22 102-123 29-50 (200)
409 TIGR03410 urea_trans_UrtE urea 93.5 0.061 1.3E-06 43.9 2.8 23 101-123 27-49 (230)
410 cd03216 ABC_Carb_Monos_I This 93.5 0.063 1.4E-06 41.8 2.8 22 102-123 28-49 (163)
411 PRK15093 antimicrobial peptide 93.5 0.11 2.5E-06 45.2 4.6 22 102-123 35-56 (330)
412 COG0194 Gmk Guanylate kinase [ 93.5 0.054 1.2E-06 43.9 2.4 23 101-123 5-28 (191)
413 cd01124 KaiC KaiC is a circadi 93.5 0.055 1.2E-06 42.3 2.4 20 103-122 2-22 (187)
414 cd01120 RecA-like_NTPases RecA 93.5 0.052 1.1E-06 40.7 2.1 20 103-122 2-22 (165)
415 PRK10895 lipopolysaccharide AB 93.5 0.061 1.3E-06 44.3 2.7 23 102-124 31-53 (241)
416 cd03238 ABC_UvrA The excision 93.5 0.058 1.2E-06 43.0 2.5 20 101-120 22-42 (176)
417 KOG1487 GTP-binding protein DR 93.5 0.27 5.8E-06 42.2 6.5 82 100-189 59-155 (358)
418 TIGR01978 sufC FeS assembly AT 93.4 0.065 1.4E-06 44.0 2.8 22 102-123 28-49 (243)
419 cd01428 ADK Adenylate kinase ( 93.4 0.05 1.1E-06 42.8 2.1 20 102-121 1-21 (194)
420 COG0481 LepA Membrane GTPase L 93.4 0.15 3.3E-06 46.9 5.3 81 102-182 11-111 (603)
421 PHA00729 NTP-binding motif con 93.4 0.064 1.4E-06 44.7 2.7 22 101-122 18-40 (226)
422 TIGR02323 CP_lyasePhnK phospho 93.4 0.065 1.4E-06 44.4 2.7 23 102-124 31-53 (253)
423 smart00053 DYNc Dynamin, GTPas 93.3 0.067 1.5E-06 44.9 2.8 23 101-123 27-50 (240)
424 cd03263 ABC_subfamily_A The AB 93.3 0.068 1.5E-06 43.3 2.7 22 102-123 30-51 (220)
425 PTZ00088 adenylate kinase 1; P 93.3 0.062 1.3E-06 44.7 2.5 21 101-121 7-28 (229)
426 cd03255 ABC_MJ0796_Lo1CDE_FtsE 93.3 0.069 1.5E-06 43.2 2.7 22 102-123 32-53 (218)
427 cd03231 ABC_CcmA_heme_exporter 93.2 0.072 1.6E-06 42.8 2.7 24 101-124 27-50 (201)
428 cd01128 rho_factor Transcripti 93.2 0.069 1.5E-06 45.0 2.7 22 101-122 17-39 (249)
429 cd01129 PulE-GspE PulE/GspE Th 93.2 0.23 5E-06 42.1 5.9 83 102-189 82-167 (264)
430 cd02023 UMPK Uridine monophosp 93.2 0.061 1.3E-06 42.9 2.3 19 103-121 2-21 (198)
431 cd01131 PilT Pilus retraction 93.2 0.22 4.7E-06 40.1 5.5 20 103-122 4-24 (198)
432 PF00625 Guanylate_kin: Guanyl 93.2 0.064 1.4E-06 42.4 2.3 20 103-122 5-25 (183)
433 cd03215 ABC_Carb_Monos_II This 93.2 0.085 1.8E-06 41.7 3.0 23 102-124 28-50 (182)
434 TIGR01313 therm_gnt_kin carboh 93.2 0.053 1.1E-06 41.8 1.8 18 103-120 1-19 (163)
435 TIGR03864 PQQ_ABC_ATP ABC tran 93.2 0.073 1.6E-06 43.7 2.7 22 102-123 29-50 (236)
436 KOG3887 Predicted small GTPase 93.1 0.2 4.2E-06 42.7 5.2 80 102-182 29-113 (347)
437 cd03230 ABC_DR_subfamily_A Thi 93.1 0.08 1.7E-06 41.5 2.8 22 102-123 28-49 (173)
438 cd03223 ABCD_peroxisomal_ALDP 93.1 0.079 1.7E-06 41.4 2.7 22 102-123 29-50 (166)
439 COG5192 BMS1 GTP-binding prote 93.1 0.13 2.8E-06 48.5 4.4 75 99-181 68-144 (1077)
440 TIGR00073 hypB hydrogenase acc 93.1 0.064 1.4E-06 43.4 2.3 23 100-122 22-45 (207)
441 cd03237 ABC_RNaseL_inhibitor_d 93.1 0.075 1.6E-06 44.4 2.7 22 102-123 27-48 (246)
442 PRK13638 cbiO cobalt transport 93.1 0.077 1.7E-06 44.7 2.8 22 102-123 29-50 (271)
443 PF05496 RuvB_N: Holliday junc 93.1 0.051 1.1E-06 45.4 1.7 25 101-125 51-75 (233)
444 PRK10751 molybdopterin-guanine 93.1 0.066 1.4E-06 42.8 2.2 19 102-120 8-27 (173)
445 CHL00131 ycf16 sulfate ABC tra 93.0 0.081 1.8E-06 43.8 2.8 22 102-123 35-56 (252)
446 PF00910 RNA_helicase: RNA hel 93.0 0.062 1.3E-06 39.0 1.9 20 103-122 1-21 (107)
447 TIGR01351 adk adenylate kinase 93.0 0.067 1.4E-06 43.3 2.2 20 102-121 1-21 (210)
448 cd03232 ABC_PDR_domain2 The pl 93.0 0.084 1.8E-06 42.1 2.8 21 102-122 35-55 (192)
449 PRK10247 putative ABC transpor 93.0 0.08 1.7E-06 43.3 2.7 22 102-123 35-56 (225)
450 KOG1144 Translation initiation 93.0 0.14 3.1E-06 49.3 4.6 84 99-182 474-575 (1064)
451 cd03221 ABCF_EF-3 ABCF_EF-3 E 92.9 0.092 2E-06 40.1 2.8 22 102-123 28-49 (144)
452 TIGR02770 nickel_nikD nickel i 92.9 0.077 1.7E-06 43.5 2.5 23 102-124 14-36 (230)
453 PRK11701 phnK phosphonate C-P 92.9 0.081 1.8E-06 44.1 2.7 22 102-123 34-55 (258)
454 TIGR00235 udk uridine kinase. 92.9 0.094 2E-06 42.4 3.0 21 100-120 6-27 (207)
455 PRK13649 cbiO cobalt transport 92.9 0.083 1.8E-06 44.6 2.8 22 102-123 35-56 (280)
456 PRK13543 cytochrome c biogenes 92.9 0.083 1.8E-06 42.8 2.7 23 102-124 39-61 (214)
457 PRK05480 uridine/cytidine kina 92.9 0.083 1.8E-06 42.6 2.6 23 99-121 5-28 (209)
458 TIGR03005 ectoine_ehuA ectoine 92.9 0.085 1.8E-06 43.8 2.8 23 102-124 28-50 (252)
459 PRK09580 sufC cysteine desulfu 92.9 0.089 1.9E-06 43.4 2.8 22 102-123 29-50 (248)
460 PRK14247 phosphate ABC transpo 92.9 0.084 1.8E-06 43.7 2.7 23 102-124 31-53 (250)
461 TIGR02315 ABC_phnC phosphonate 92.9 0.086 1.9E-06 43.3 2.7 22 102-123 30-51 (243)
462 PRK05057 aroK shikimate kinase 92.8 0.081 1.8E-06 41.7 2.5 20 101-120 5-25 (172)
463 TIGR03608 L_ocin_972_ABC putat 92.8 0.089 1.9E-06 42.1 2.7 22 102-123 26-47 (206)
464 cd03226 ABC_cobalt_CbiO_domain 92.8 0.09 1.9E-06 42.2 2.7 22 102-123 28-49 (205)
465 TIGR01359 UMP_CMP_kin_fam UMP- 92.8 0.077 1.7E-06 41.6 2.3 19 103-121 2-21 (183)
466 COG1118 CysA ABC-type sulfate/ 92.8 0.077 1.7E-06 46.3 2.4 21 102-122 30-50 (345)
467 PRK00625 shikimate kinase; Pro 92.8 0.086 1.9E-06 41.9 2.5 19 102-120 2-21 (173)
468 cd03228 ABCC_MRP_Like The MRP 92.8 0.084 1.8E-06 41.3 2.4 22 102-123 30-51 (171)
469 PRK15056 manganese/iron transp 92.7 0.091 2E-06 44.3 2.8 22 102-123 35-56 (272)
470 TIGR03411 urea_trans_UrtD urea 92.7 0.092 2E-06 43.2 2.7 22 102-123 30-51 (242)
471 PRK10575 iron-hydroxamate tran 92.7 0.095 2.1E-06 44.0 2.8 23 102-124 39-61 (265)
472 cd03225 ABC_cobalt_CbiO_domain 92.7 0.095 2.1E-06 42.1 2.7 22 102-123 29-50 (211)
473 PRK00279 adk adenylate kinase; 92.7 0.09 2E-06 42.7 2.6 20 101-120 1-21 (215)
474 PRK10771 thiQ thiamine transpo 92.7 0.13 2.8E-06 42.2 3.5 22 102-123 27-48 (232)
475 PRK11300 livG leucine/isoleuci 92.7 0.095 2.1E-06 43.4 2.8 22 102-123 33-54 (255)
476 cd03269 ABC_putative_ATPase Th 92.7 0.096 2.1E-06 42.1 2.7 22 102-123 28-49 (210)
477 PF00503 G-alpha: G-protein al 92.7 0.094 2E-06 46.6 2.9 21 99-119 57-78 (389)
478 TIGR02769 nickel_nikE nickel i 92.7 0.095 2.1E-06 44.0 2.8 22 102-123 39-60 (265)
479 COG4615 PvdE ABC-type sideroph 92.6 0.032 6.8E-07 50.4 -0.2 53 103-169 352-404 (546)
480 PRK14241 phosphate transporter 92.6 0.092 2E-06 43.8 2.6 22 102-123 32-53 (258)
481 TIGR03771 anch_rpt_ABC anchore 92.6 0.096 2.1E-06 42.8 2.7 22 102-123 8-29 (223)
482 cd01918 HprK_C HprK/P, the bif 92.6 0.096 2.1E-06 40.9 2.5 25 100-124 14-39 (149)
483 cd03262 ABC_HisP_GlnQ_permease 92.6 0.099 2.1E-06 42.0 2.7 22 102-123 28-49 (213)
484 cd01672 TMPK Thymidine monopho 92.6 0.085 1.8E-06 41.3 2.3 18 103-120 3-21 (200)
485 cd03224 ABC_TM1139_LivF_branch 92.6 0.099 2.2E-06 42.3 2.7 22 102-123 28-49 (222)
486 COG1120 FepC ABC-type cobalami 92.6 0.089 1.9E-06 44.7 2.5 19 103-121 31-50 (258)
487 COG2274 SunT ABC-type bacterio 92.5 0.11 2.5E-06 49.9 3.4 23 102-124 501-523 (709)
488 cd03264 ABC_drug_resistance_li 92.5 0.092 2E-06 42.3 2.4 22 102-123 27-48 (211)
489 cd03218 ABC_YhbG The ABC trans 92.5 0.1 2.2E-06 42.6 2.7 22 102-123 28-49 (232)
490 PF12775 AAA_7: P-loop contain 92.5 0.09 2E-06 44.8 2.5 23 100-122 33-56 (272)
491 TIGR00176 mobB molybdopterin-g 92.5 0.092 2E-06 40.9 2.3 19 103-121 2-21 (155)
492 cd02021 GntK Gluconate kinase 92.5 0.095 2.1E-06 39.7 2.3 19 103-121 2-21 (150)
493 PRK14262 phosphate ABC transpo 92.5 0.1 2.2E-06 43.2 2.7 21 102-122 31-51 (250)
494 TIGR02673 FtsE cell division A 92.5 0.11 2.3E-06 41.9 2.7 22 102-123 30-51 (214)
495 PRK14240 phosphate transporter 92.5 0.1 2.2E-06 43.2 2.7 21 102-122 31-51 (250)
496 PRK11831 putative ABC transpor 92.5 0.11 2.3E-06 43.8 2.8 23 102-124 35-57 (269)
497 cd03260 ABC_PstB_phosphate_tra 92.4 0.1 2.2E-06 42.5 2.7 23 102-124 28-50 (227)
498 cd03222 ABC_RNaseL_inhibitor T 92.4 0.099 2.1E-06 41.7 2.5 23 101-123 26-48 (177)
499 PRK08099 bifunctional DNA-bind 92.4 0.096 2.1E-06 47.1 2.6 24 98-121 217-241 (399)
500 PRK11650 ugpC glycerol-3-phosp 92.4 0.09 2E-06 46.4 2.4 22 102-123 32-53 (356)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2e-31 Score=213.29 Aligned_cols=96 Identities=24% Similarity=0.448 Sum_probs=93.6
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEE
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~il 175 (193)
...|||+|+||+|||||||+ ||.++.|. .|..|+|+||..++++++|+.++++||||+|||+|+.+...||++|||+|
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii 86 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 86 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEE
Confidence 45899999999999999999 99999999 89999999999999999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHhcC
Q 029430 176 FMFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 176 lvyDit~~~Sf~~l~~W~ 193 (193)
+|||+|+++||+++..|+
T Consensus 87 ~vyDiT~~~SF~~v~~Wi 104 (205)
T KOG0084|consen 87 FVYDITKQESFNNVKRWI 104 (205)
T ss_pred EEEEcccHHHhhhHHHHH
Confidence 999999999999999995
No 2
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3.3e-30 Score=206.14 Aligned_cols=101 Identities=21% Similarity=0.466 Sum_probs=95.9
Q ss_pred CCCCCceeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccC
Q 029430 93 DTDSDLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKD 170 (193)
Q Consensus 93 ~~~~~~~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~ 170 (193)
....+...+|||+|||.+||||||+ ||+.+.|. .|.+|+|+||..+++.+.+..+.|++|||+|||+|+.+.+.|+++
T Consensus 15 ~~~~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rd 94 (221)
T KOG0094|consen 15 TFGAPLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD 94 (221)
T ss_pred ccCccceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccC
Confidence 3344556799999999999999999 99999999 899999999999999999999999999999999999999999999
Q ss_pred CcEEEEEEECCChhhHHHHHhcC
Q 029430 171 AVAILFMFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 171 a~~illvyDit~~~Sf~~l~~W~ 193 (193)
+.++|+|||++|+.||++..+||
T Consensus 95 s~vaviVyDit~~~Sfe~t~kWi 117 (221)
T KOG0094|consen 95 SSVAVIVYDITDRNSFENTSKWI 117 (221)
T ss_pred CeEEEEEEeccccchHHHHHHHH
Confidence 99999999999999999999996
No 3
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=8.8e-30 Score=203.13 Aligned_cols=96 Identities=27% Similarity=0.508 Sum_probs=92.7
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcCcccc-ccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEE
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQER-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~~f~~-~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~il 175 (193)
...+||||||+.+||||||+ ||+.++|.+ ..+|+|..|.++++.+++..++|+||||+|||+|..+.++||++|+++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 35899999999999999999 999999995 5889999999999999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHhcC
Q 029430 176 FMFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 176 lvyDit~~~Sf~~l~~W~ 193 (193)
+|||+|+.+||..+++|+
T Consensus 83 vvYDit~~~SF~~aK~Wv 100 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWV 100 (200)
T ss_pred EEEecccHHHHHHHHHHH
Confidence 999999999999999996
No 4
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.95 E-value=6.2e-28 Score=188.14 Aligned_cols=96 Identities=29% Similarity=0.526 Sum_probs=91.4
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcCccccccc-cceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEE
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQ-MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~~f~~~~~-t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~il 175 (193)
...+||+++|++|||||||+ +|+.+.|....+ |+|.||..+.+.++|..+++.||||+|||+|+.+.+.||++|.++|
T Consensus 9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiI 88 (209)
T KOG0080|consen 9 DTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGII 88 (209)
T ss_pred ceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeE
Confidence 34799999999999999999 999999995555 7999999999999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHhcC
Q 029430 176 FMFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 176 lvyDit~~~Sf~~l~~W~ 193 (193)
+|||+|+++||.++..|+
T Consensus 89 lVYDVT~Rdtf~kLd~W~ 106 (209)
T KOG0080|consen 89 LVYDVTSRDTFVKLDIWL 106 (209)
T ss_pred EEEEccchhhHHhHHHHH
Confidence 999999999999999995
No 5
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.8e-27 Score=192.39 Aligned_cols=98 Identities=22% Similarity=0.442 Sum_probs=94.4
Q ss_pred CCceeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcE
Q 029430 96 SDLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVA 173 (193)
Q Consensus 96 ~~~~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~ 173 (193)
.....+||+++||+|||||+|+ ||..+.|. .+..|+|+||..+++++++..+.+++|||+|||+|+.+...||+.|++
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g 87 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG 87 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence 3445899999999999999999 99999999 889999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHhcC
Q 029430 174 ILFMFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 174 illvyDit~~~Sf~~l~~W~ 193 (193)
+++|||+||..||+++.+|+
T Consensus 88 i~LvyDitne~Sfeni~~W~ 107 (207)
T KOG0078|consen 88 ILLVYDITNEKSFENIRNWI 107 (207)
T ss_pred eEEEEEccchHHHHHHHHHH
Confidence 99999999999999999995
No 6
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=2.2e-27 Score=183.38 Aligned_cols=95 Identities=23% Similarity=0.436 Sum_probs=92.6
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEE
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 176 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~ill 176 (193)
..+|||++|..|||||+|+ ||..+-|+ ....|+|++|+.++++++|+.++++||||+|||+|+++.+.||+.|+++|+
T Consensus 6 flfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalil 85 (213)
T KOG0095|consen 6 FLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALIL 85 (213)
T ss_pred eeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEE
Confidence 3789999999999999999 99999999 888899999999999999999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHhcC
Q 029430 177 MFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 177 vyDit~~~Sf~~l~~W~ 193 (193)
|||++...||+.+.+||
T Consensus 86 vydiscqpsfdclpewl 102 (213)
T KOG0095|consen 86 VYDISCQPSFDCLPEWL 102 (213)
T ss_pred EEecccCcchhhhHHHH
Confidence 99999999999999996
No 7
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.93 E-value=6.7e-27 Score=185.65 Aligned_cols=94 Identities=22% Similarity=0.439 Sum_probs=91.9
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEE
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 176 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~ill 176 (193)
..+||+++||+|||||||. +|++++|. .|..|+|.+|..|.+.+|++.+.++||||+|||+|.++.-.||+++|+.++
T Consensus 8 ~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvl 87 (210)
T KOG0394|consen 8 TLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCVL 87 (210)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEEE
Confidence 3689999999999999999 99999999 889999999999999999999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHhc
Q 029430 177 MFDLTSRCTLNRFDHN 192 (193)
Q Consensus 177 vyDit~~~Sf~~l~~W 192 (193)
|||+++++||++|..|
T Consensus 88 vydv~~~~Sfe~L~~W 103 (210)
T KOG0394|consen 88 VYDVNNPKSFENLENW 103 (210)
T ss_pred EeecCChhhhccHHHH
Confidence 9999999999999999
No 8
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.93 E-value=4e-27 Score=181.48 Aligned_cols=94 Identities=19% Similarity=0.453 Sum_probs=91.8
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEE
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illv 177 (193)
.+|++++||+|||||||+ +|..+.|. .|..|+|.||..+++.++|..++++|||++|||+|+.+...||++.+++++|
T Consensus 8 LfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vV 87 (198)
T KOG0079|consen 8 LFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVV 87 (198)
T ss_pred HHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEE
Confidence 579999999999999999 99999999 8999999999999999999999999999999999999999999999999999
Q ss_pred EECCChhhHHHHHhcC
Q 029430 178 FDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 178 yDit~~~Sf~~l~~W~ 193 (193)
||+||.+||+++++||
T Consensus 88 YDVTn~ESF~Nv~rWL 103 (198)
T KOG0079|consen 88 YDVTNGESFNNVKRWL 103 (198)
T ss_pred EECcchhhhHhHHHHH
Confidence 9999999999999996
No 9
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.8e-26 Score=183.59 Aligned_cols=95 Identities=19% Similarity=0.391 Sum_probs=92.4
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEE
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 176 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~ill 176 (193)
..+|++++||.|||||+|+ ||.++.|. .+..|+|+||..+.+++|+++++++||||+|||.++++...||++|.+.||
T Consensus 5 ~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~GalL 84 (216)
T KOG0098|consen 5 YLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALL 84 (216)
T ss_pred ceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceEE
Confidence 4799999999999999999 99999999 777899999999999999999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHhcC
Q 029430 177 MFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 177 vyDit~~~Sf~~l~~W~ 193 (193)
|||+++++||+.|..||
T Consensus 85 Vydit~r~sF~hL~~wL 101 (216)
T KOG0098|consen 85 VYDITRRESFNHLTSWL 101 (216)
T ss_pred EEEccchhhHHHHHHHH
Confidence 99999999999999996
No 10
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.6e-26 Score=186.77 Aligned_cols=96 Identities=27% Similarity=0.480 Sum_probs=93.7
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEE
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~il 175 (193)
...+|||++||+|||||-|+ ||..++|. +..+|+|++|.++++.++++.++.+||||+|||+|+.+...||++|.|.+
T Consensus 12 dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAl 91 (222)
T KOG0087|consen 12 DYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 91 (222)
T ss_pred ceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeE
Confidence 45899999999999999999 99999999 89999999999999999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHhcC
Q 029430 176 FMFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 176 lvyDit~~~Sf~~l~~W~ 193 (193)
+|||+|.+.||+++.+||
T Consensus 92 lVYDITr~~Tfenv~rWL 109 (222)
T KOG0087|consen 92 LVYDITRRQTFENVERWL 109 (222)
T ss_pred EEEechhHHHHHHHHHHH
Confidence 999999999999999996
No 11
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.93 E-value=2.3e-26 Score=179.18 Aligned_cols=97 Identities=30% Similarity=0.505 Sum_probs=93.7
Q ss_pred CceeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEE
Q 029430 97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 174 (193)
Q Consensus 97 ~~~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~i 174 (193)
+..+||+|++|++.||||||+ ||+.++|. ....|+...|..+.+.+.+.+..+.||||+|||+|..+-|.||++++++
T Consensus 10 ~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGa 89 (218)
T KOG0088|consen 10 KSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGA 89 (218)
T ss_pred CceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCce
Confidence 445899999999999999999 99999999 8889999999999999999999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHhcC
Q 029430 175 LFMFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 175 llvyDit~~~Sf~~l~~W~ 193 (193)
|+||||||++||+.+++|+
T Consensus 90 lLVyDITDrdSFqKVKnWV 108 (218)
T KOG0088|consen 90 LLVYDITDRDSFQKVKNWV 108 (218)
T ss_pred EEEEeccchHHHHHHHHHH
Confidence 9999999999999999996
No 12
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=8.8e-26 Score=175.03 Aligned_cols=95 Identities=22% Similarity=0.424 Sum_probs=92.1
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEE
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 176 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~ill 176 (193)
..+|++++|..|.||++|+ +|+.++|. +...|+|++|.++.+.+.++.++++||||+|||+|++....||++|.+.++
T Consensus 8 yLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlL 87 (214)
T KOG0086|consen 8 YLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALL 87 (214)
T ss_pred hhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEE
Confidence 3789999999999999999 99999999 777799999999999999999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHhcC
Q 029430 177 MFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 177 vyDit~~~Sf~~l~~W~ 193 (193)
|||+|+++||+.+.+||
T Consensus 88 VYD~TsrdsfnaLtnWL 104 (214)
T KOG0086|consen 88 VYDITSRDSFNALTNWL 104 (214)
T ss_pred EEeccchhhHHHHHHHH
Confidence 99999999999999996
No 13
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.92 E-value=5.1e-25 Score=179.47 Aligned_cols=93 Identities=23% Similarity=0.451 Sum_probs=89.0
Q ss_pred eEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEEE
Q 029430 101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 178 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illvy 178 (193)
+.|+++|++|||||||+ +|+++.|. ++.+|+|.++..+.+.+++..+.++|||++|+++|..++..||++++++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 47999999999999999 99999998 78889999999999999999999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHhcC
Q 029430 179 DLTSRCTLNRFDHNQ 193 (193)
Q Consensus 179 Dit~~~Sf~~l~~W~ 193 (193)
|++|++||+++++|+
T Consensus 81 Dvtd~~Sf~~l~~w~ 95 (202)
T cd04120 81 DITKKETFDDLPKWM 95 (202)
T ss_pred ECcCHHHHHHHHHHH
Confidence 999999999999994
No 14
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=9.3e-25 Score=168.23 Aligned_cols=94 Identities=24% Similarity=0.490 Sum_probs=91.3
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEE
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illv 177 (193)
.+|++++|++.||||||+ +|.++.|. .+..|.|++|..|++.-..++++++||||+|||+|+.+...||+++++||+|
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiLm 100 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILM 100 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEEE
Confidence 679999999999999999 99999999 8999999999999998889999999999999999999999999999999999
Q ss_pred EECCChhhHHHHHhcC
Q 029430 178 FDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 178 yDit~~~Sf~~l~~W~ 193 (193)
||+||.+||+.+++|.
T Consensus 101 yDitNeeSf~svqdw~ 116 (193)
T KOG0093|consen 101 YDITNEESFNSVQDWI 116 (193)
T ss_pred EecCCHHHHHHHHHHH
Confidence 9999999999999994
No 15
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.91 E-value=1.6e-24 Score=173.64 Aligned_cols=95 Identities=25% Similarity=0.394 Sum_probs=88.4
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEE
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~il 175 (193)
...+||+++|++|||||||+ +|+.+.|. ++.||++.++ .+.+.+++..+.++||||+|+++|..+++.+|++++++|
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i 81 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 81 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence 35799999999999999999 99999998 7888998766 578899999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHH-HhcC
Q 029430 176 FMFDLTSRCTLNRF-DHNQ 193 (193)
Q Consensus 176 lvyDit~~~Sf~~l-~~W~ 193 (193)
+|||+++++||+++ ..|+
T Consensus 82 lvyDit~~~Sf~~~~~~w~ 100 (182)
T cd04172 82 ICFDISRPETLDSVLKKWK 100 (182)
T ss_pred EEEECCCHHHHHHHHHHHH
Confidence 99999999999997 7884
No 16
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.91 E-value=2.5e-24 Score=171.73 Aligned_cols=92 Identities=22% Similarity=0.393 Sum_probs=86.5
Q ss_pred eEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEEE
Q 029430 101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 178 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illvy 178 (193)
+||+++|++|||||||+ +|+.++|. ++.+|+|.++ .+.+.+++..+.++||||+|+++|..+++.++++++++|+||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 69999999999999999 99999998 7899998766 567888999999999999999999999999999999999999
Q ss_pred ECCChhhHHHH-HhcC
Q 029430 179 DLTSRCTLNRF-DHNQ 193 (193)
Q Consensus 179 Dit~~~Sf~~l-~~W~ 193 (193)
|+++++||+++ +.|+
T Consensus 81 d~~~~~Sf~~~~~~w~ 96 (176)
T cd04133 81 SLISRASYENVLKKWV 96 (176)
T ss_pred EcCCHHHHHHHHHHHH
Confidence 99999999998 6885
No 17
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.91 E-value=2.2e-24 Score=172.36 Aligned_cols=93 Identities=52% Similarity=0.890 Sum_probs=89.5
Q ss_pred eEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEEE
Q 029430 101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 178 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illvy 178 (193)
+||+++|++|||||||+ +|++++|. ++.||+|.++..+.+.+++..+.++|||++|+++|..+++.++++++++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 59999999999999999 99999999 78999999999899999999999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHhcC
Q 029430 179 DLTSRCTLNRFDHNQ 193 (193)
Q Consensus 179 Dit~~~Sf~~l~~W~ 193 (193)
|+++++||+++.+|+
T Consensus 81 D~t~~~s~~~i~~~~ 95 (182)
T cd04128 81 DLTRKSTLNSIKEWY 95 (182)
T ss_pred ECcCHHHHHHHHHHH
Confidence 999999999999995
No 18
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.91 E-value=2.2e-24 Score=173.91 Aligned_cols=95 Identities=23% Similarity=0.448 Sum_probs=90.3
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEE
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 176 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~ill 176 (193)
..+||+++|+.|||||||+ +|++++|. ++.+++|.++..+.+.+++..+.+++||++|+++|..+++.|++++|++|+
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~ill 84 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIIL 84 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEE
Confidence 3699999999999999999 99999998 777899999988999999999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHhcC
Q 029430 177 MFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 177 vyDit~~~Sf~~l~~W~ 193 (193)
|||+++++||+++.+|+
T Consensus 85 VfD~t~~~Sf~~~~~w~ 101 (189)
T cd04121 85 VYDITNRWSFDGIDRWI 101 (189)
T ss_pred EEECcCHHHHHHHHHHH
Confidence 99999999999999995
No 19
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.91 E-value=2.2e-25 Score=174.36 Aligned_cols=96 Identities=20% Similarity=0.459 Sum_probs=91.4
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEE-CCeEEEEEEEeCCCCCCCCcchhhhccCCcEE
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMV-QGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 174 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v-~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~i 174 (193)
...++++++||+-||||||+ .|..++|. -..||+|+||+.+.+++ +|.++++++|||+|||+|+++...||+++.++
T Consensus 6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgv 85 (213)
T KOG0091|consen 6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGV 85 (213)
T ss_pred EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccce
Confidence 35899999999999999999 99999999 67899999999999988 68899999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHhcC
Q 029430 175 LFMFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 175 llvyDit~~~Sf~~l~~W~ 193 (193)
++|||+||++|||.+++|+
T Consensus 86 llvyditnr~sfehv~~w~ 104 (213)
T KOG0091|consen 86 LLVYDITNRESFEHVENWV 104 (213)
T ss_pred EEEEeccchhhHHHHHHHH
Confidence 9999999999999999996
No 20
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.91 E-value=3.7e-24 Score=170.62 Aligned_cols=93 Identities=25% Similarity=0.400 Sum_probs=86.8
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEE
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illv 177 (193)
++||+++|++|||||||+ +|+++.|. ++.||++.++ .+.+.+++..+.++||||+|+++|..+++.++++++++|+|
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv 79 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC 79 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence 479999999999999999 99999998 8888998776 47889999999999999999999999999999999999999
Q ss_pred EECCChhhHHHH-HhcC
Q 029430 178 FDLTSRCTLNRF-DHNQ 193 (193)
Q Consensus 178 yDit~~~Sf~~l-~~W~ 193 (193)
||+++++||+++ ++|+
T Consensus 80 fdit~~~Sf~~~~~~w~ 96 (178)
T cd04131 80 FDISRPETLDSVLKKWR 96 (178)
T ss_pred EECCChhhHHHHHHHHH
Confidence 999999999996 7884
No 21
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.91 E-value=4.8e-24 Score=171.25 Aligned_cols=93 Identities=18% Similarity=0.333 Sum_probs=86.2
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEE
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illv 177 (193)
.+||+++|++|||||||+ +|+.++|. ++.||+|.++ .+.+.+++..+.++||||+|+++|..+++.|++++|++|+|
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 589999999999999999 99999997 8889998665 46678899999999999999999999999999999999999
Q ss_pred EECCChhhHHHHH-hcC
Q 029430 178 FDLTSRCTLNRFD-HNQ 193 (193)
Q Consensus 178 yDit~~~Sf~~l~-~W~ 193 (193)
||++|++||++++ .|+
T Consensus 82 ydit~~~Sf~~~~~~w~ 98 (191)
T cd01875 82 FSIASPSSYENVRHKWH 98 (191)
T ss_pred EECCCHHHHHHHHHHHH
Confidence 9999999999997 573
No 22
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.91 E-value=4.4e-24 Score=174.10 Aligned_cols=93 Identities=22% Similarity=0.349 Sum_probs=87.3
Q ss_pred eEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEEC-----CeEEEEEEEeCCCCCCCCcchhhhccCCcE
Q 029430 101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQ-----GARIAFSIWDVGGDSRSFDHVPIACKDAVA 173 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~-----~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~ 173 (193)
+||+++|++|||||||+ +|+++.|. ++.+|+|.++..+.+.++ ++.+.++|||++|+++|..+++.||+++++
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 59999999999999999 99999998 788899999888888774 578999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHhcC
Q 029430 174 ILFMFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 174 illvyDit~~~Sf~~l~~W~ 193 (193)
+|+|||+++++||+++.+|+
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~ 100 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWS 100 (202)
T ss_pred EEEEEECcChHHHHHHHHHH
Confidence 99999999999999999995
No 23
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.90 E-value=5.7e-25 Score=167.28 Aligned_cols=90 Identities=22% Similarity=0.449 Sum_probs=87.2
Q ss_pred EEECCCCCChhhHH-hhhcCccc--cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEEEEC
Q 029430 104 SLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDL 180 (193)
Q Consensus 104 vllGd~gvGKTSLl-r~~~~~f~--~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illvyDi 180 (193)
+++||+++|||+|+ ||.++-|. ....|+|+||..+.+.++++.++++||||+|||+|++....||+++|+.+++||+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 47999999999999 99999998 7788999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHhcC
Q 029430 181 TSRCTLNRFDHNQ 193 (193)
Q Consensus 181 t~~~Sf~~l~~W~ 193 (193)
+|+.||++++.|+
T Consensus 81 ankasfdn~~~wl 93 (192)
T KOG0083|consen 81 ANKASFDNCQAWL 93 (192)
T ss_pred ccchhHHHHHHHH
Confidence 9999999999996
No 24
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.90 E-value=2.4e-23 Score=173.13 Aligned_cols=95 Identities=23% Similarity=0.364 Sum_probs=88.3
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEE
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~il 175 (193)
...+||+++|++|||||||+ +|+++.|. +|.||++.++ .+.+.+++..+.++||||+|+|+|..+++.||++++++|
T Consensus 11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~-~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vI 89 (232)
T cd04174 11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL 89 (232)
T ss_pred eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeee-EEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEE
Confidence 45899999999999999999 99999999 8889998776 467889999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHH-HhcC
Q 029430 176 FMFDLTSRCTLNRF-DHNQ 193 (193)
Q Consensus 176 lvyDit~~~Sf~~l-~~W~ 193 (193)
+|||+++++||+++ ..|+
T Consensus 90 lVyDit~~~Sf~~~~~~w~ 108 (232)
T cd04174 90 LCFDISRPETVDSALKKWK 108 (232)
T ss_pred EEEECCChHHHHHHHHHHH
Confidence 99999999999984 7884
No 25
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.89 E-value=4.4e-23 Score=163.53 Aligned_cols=92 Identities=20% Similarity=0.323 Sum_probs=85.3
Q ss_pred eEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEEE
Q 029430 101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 178 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illvy 178 (193)
+||+++|++|||||||+ +|++++|. ++.||++.++ .+.+.+++..+.++|||++|+++|..++..++++++++|+||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~ 80 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 80 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-EEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence 79999999999999999 99999997 8889998776 456788999999999999999999999999999999999999
Q ss_pred ECCChhhHHHHH-hcC
Q 029430 179 DLTSRCTLNRFD-HNQ 193 (193)
Q Consensus 179 Dit~~~Sf~~l~-~W~ 193 (193)
|+++++||+++. .|+
T Consensus 81 d~~~~~s~~~~~~~w~ 96 (175)
T cd01874 81 SVVSPSSFENVKEKWV 96 (175)
T ss_pred ECCCHHHHHHHHHHHH
Confidence 999999999997 473
No 26
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.89 E-value=9e-23 Score=167.70 Aligned_cols=96 Identities=24% Similarity=0.352 Sum_probs=91.0
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEE
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~il 175 (193)
...+||+++|++|||||||+ +|+.++|. .+.+|+|.++..+.+..++..+.+++||++|+++|..++..|+++++++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 45799999999999999999 99999998 78899999998888888888999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHhcC
Q 029430 176 FMFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 176 lvyDit~~~Sf~~l~~W~ 193 (193)
+|||+++++||+++.+|+
T Consensus 91 lvfD~~~~~s~~~i~~w~ 108 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWH 108 (219)
T ss_pred EEEeCCCHHHHHHHHHHH
Confidence 999999999999999994
No 27
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.89 E-value=4.7e-23 Score=170.36 Aligned_cols=92 Identities=25% Similarity=0.409 Sum_probs=85.9
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEE
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illv 177 (193)
++||+|||++|||||||+ +|+++.|. +|.||++.++. +.+.+++..+.++||||+|++.|..+++.+|+++|++|+|
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illv 79 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLIC 79 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEE
Confidence 379999999999999999 99999999 88899987764 6788999999999999999999999999999999999999
Q ss_pred EECCChhhHHHH-Hhc
Q 029430 178 FDLTSRCTLNRF-DHN 192 (193)
Q Consensus 178 yDit~~~Sf~~l-~~W 192 (193)
||+++++||+++ ..|
T Consensus 80 fdis~~~Sf~~i~~~w 95 (222)
T cd04173 80 FDISRPETLDSVLKKW 95 (222)
T ss_pred EECCCHHHHHHHHHHH
Confidence 999999999999 456
No 28
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.89 E-value=7.5e-23 Score=165.10 Aligned_cols=93 Identities=24% Similarity=0.420 Sum_probs=88.5
Q ss_pred eEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEEC-CeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEE
Q 029430 101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQ-GARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~-~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illv 177 (193)
+||+++|++|||||||+ +|+++.|. .+.+|+|.++..+.+.++ +..+.+++||++|+++|..+++.++++++++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 69999999999999999 99999998 788999999988889998 8899999999999999999999999999999999
Q ss_pred EECCChhhHHHHHhcC
Q 029430 178 FDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 178 yDit~~~Sf~~l~~W~ 193 (193)
||+++++||+++.+|+
T Consensus 81 ~D~t~~~s~~~~~~~~ 96 (201)
T cd04107 81 FDVTRPSTFEAVLKWK 96 (201)
T ss_pred EECCCHHHHHHHHHHH
Confidence 9999999999999883
No 29
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.89 E-value=5.4e-23 Score=160.27 Aligned_cols=94 Identities=22% Similarity=0.433 Sum_probs=89.1
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEE
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illv 177 (193)
.+||+++|++|||||||+ +|++++|. .+.+|+|.++..+.+.+++..+.+++||++|+++|..++..++++++++|+|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 489999999999999999 99999998 6777999999888899999999999999999999999999999999999999
Q ss_pred EECCChhhHHHHHhcC
Q 029430 178 FDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 178 yDit~~~Sf~~l~~W~ 193 (193)
||+++++||+++.+|+
T Consensus 82 ~d~~~~~s~~~~~~~~ 97 (166)
T cd04122 82 YDITRRSTYNHLSSWL 97 (166)
T ss_pred EECCCHHHHHHHHHHH
Confidence 9999999999999995
No 30
>PLN00023 GTP-binding protein; Provisional
Probab=99.89 E-value=6.5e-23 Score=177.36 Aligned_cols=97 Identities=23% Similarity=0.346 Sum_probs=89.9
Q ss_pred CceeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECC-------------eEEEEEEEeCCCCCCCC
Q 029430 97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQG-------------ARIAFSIWDVGGDSRSF 161 (193)
Q Consensus 97 ~~~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~-------------~~v~l~iwD~~G~e~~~ 161 (193)
+...+||+|+|++|||||||+ +|+++.|. .+.+|+|.++..+.+.+++ +.+.++|||++|+|+|.
T Consensus 18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfr 97 (334)
T PLN00023 18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYK 97 (334)
T ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhh
Confidence 455799999999999999999 99999998 7888999999888888753 57999999999999999
Q ss_pred cchhhhccCCcEEEEEEECCChhhHHHHHhcC
Q 029430 162 DHVPIACKDAVAILFMFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 162 ~~~~~~~~~a~~illvyDit~~~Sf~~l~~W~ 193 (193)
.+++.||++++++|+|||+++++||+++.+|+
T Consensus 98 sL~~~yyr~AdgiILVyDITdr~SFenL~kWl 129 (334)
T PLN00023 98 DCRSLFYSQINGVIFVHDLSQRRTKTSLQKWA 129 (334)
T ss_pred hhhHHhccCCCEEEEEEeCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999995
No 31
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.89 E-value=8.3e-23 Score=161.11 Aligned_cols=92 Identities=22% Similarity=0.415 Sum_probs=88.6
Q ss_pred EEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEEEE
Q 029430 102 KISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD 179 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illvyD 179 (193)
||+++|++|||||||+ +|++++|. +|.+|++.++..+.+.+++..+.++|||++|+++|..++..+++++|++|+|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 8999999999999999 99999998 888999999988889999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHhcC
Q 029430 180 LTSRCTLNRFDHNQ 193 (193)
Q Consensus 180 it~~~Sf~~l~~W~ 193 (193)
+++++||+++.+|+
T Consensus 82 ~~~~~s~~~~~~~~ 95 (170)
T cd04108 82 LTDVASLEHTRQWL 95 (170)
T ss_pred CcCHHHHHHHHHHH
Confidence 99999999999985
No 32
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.88 E-value=1.1e-22 Score=158.57 Aligned_cols=93 Identities=24% Similarity=0.487 Sum_probs=88.7
Q ss_pred eEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEEE
Q 029430 101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 178 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illvy 178 (193)
+||+++|++|||||||+ +|++++|. .+.+|+|.++..+.+.+++..+.+++||++|+++|..++..+++++|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 58999999999999999 99999998 78899999998889999999999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHhcC
Q 029430 179 DLTSRCTLNRFDHNQ 193 (193)
Q Consensus 179 Dit~~~Sf~~l~~W~ 193 (193)
|+++++||+++.+|+
T Consensus 81 d~~~~~sf~~~~~~~ 95 (161)
T cd04117 81 DISSERSYQHIMKWV 95 (161)
T ss_pred ECCCHHHHHHHHHHH
Confidence 999999999999984
No 33
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.88 E-value=7.7e-23 Score=157.99 Aligned_cols=92 Identities=25% Similarity=0.486 Sum_probs=89.0
Q ss_pred EEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEEEE
Q 029430 102 KISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD 179 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illvyD 179 (193)
||+++|++|||||||+ +|+++.|. .+.+|+|.+...+.+.+++..+.++|||++|+++|..++..++++++++|+|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 8999999999999999 99999999 788899999999999999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHhcC
Q 029430 180 LTSRCTLNRFDHNQ 193 (193)
Q Consensus 180 it~~~Sf~~l~~W~ 193 (193)
+++++||+++..|+
T Consensus 81 ~~~~~S~~~~~~~~ 94 (162)
T PF00071_consen 81 VTDEESFENLKKWL 94 (162)
T ss_dssp TTBHHHHHTHHHHH
T ss_pred cccccccccccccc
Confidence 99999999999994
No 34
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.88 E-value=2.3e-22 Score=155.01 Aligned_cols=93 Identities=17% Similarity=0.315 Sum_probs=85.7
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEE
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illv 177 (193)
++||+++|++|||||||+ +|+++.|. .+.+|++ +.+.+.+.+++..+.++|||++|+++|..++..|+++++++++|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 79 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEE
Confidence 479999999999999999 99999998 6777876 55667888999999999999999999999999999999999999
Q ss_pred EECCChhhHHHHHhcC
Q 029430 178 FDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 178 yDit~~~Sf~~l~~W~ 193 (193)
||+++++||+++.+|+
T Consensus 80 ~d~~~~~s~~~~~~~~ 95 (163)
T cd04136 80 YSITSQSSFNDLQDLR 95 (163)
T ss_pred EECCCHHHHHHHHHHH
Confidence 9999999999999884
No 35
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.88 E-value=2.8e-22 Score=155.20 Aligned_cols=93 Identities=15% Similarity=0.282 Sum_probs=85.8
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEE
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illv 177 (193)
++||+++|++|||||||+ +|+++.|. .+.+|++ +++.+.+.+++..+.++|||++|+++|..+++.++++++++|+|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 79 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence 479999999999999999 99999998 6666665 66678889999999999999999999999999999999999999
Q ss_pred EECCChhhHHHHHhcC
Q 029430 178 FDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 178 yDit~~~Sf~~l~~W~ 193 (193)
||+++++||+++.+|+
T Consensus 80 ~d~~~~~s~~~~~~~~ 95 (163)
T cd04176 80 YSLVNQQTFQDIKPMR 95 (163)
T ss_pred EECCCHHHHHHHHHHH
Confidence 9999999999999883
No 36
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.88 E-value=3e-22 Score=158.19 Aligned_cols=92 Identities=12% Similarity=0.186 Sum_probs=85.8
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEE
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illv 177 (193)
.+||+++|++|||||||+ +|++++|. .+.+|++..+ .+.+.+++..+.++|||++|+++|..+++.++++++++|+|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 479999999999999999 99999998 7888888555 56788899999999999999999999999999999999999
Q ss_pred EECCChhhHHHHHhc
Q 029430 178 FDLTSRCTLNRFDHN 192 (193)
Q Consensus 178 yDit~~~Sf~~l~~W 192 (193)
||+++++||+++.+|
T Consensus 81 ~d~~~~~Sf~~~~~~ 95 (172)
T cd04141 81 YSVTDRHSFQEASEF 95 (172)
T ss_pred EECCchhHHHHHHHH
Confidence 999999999999887
No 37
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.88 E-value=2.4e-22 Score=154.92 Aligned_cols=93 Identities=19% Similarity=0.406 Sum_probs=88.9
Q ss_pred eEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEEE
Q 029430 101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 178 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illvy 178 (193)
+||+++|++|||||||+ ++++++|. .+.+|++.++..+.+.+++..+.+++||++|++.|..+++.++++++++|+||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 59999999999999999 99999998 88889999998899999999999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHhcC
Q 029430 179 DLTSRCTLNRFDHNQ 193 (193)
Q Consensus 179 Dit~~~Sf~~l~~W~ 193 (193)
|+++++||+.+.+|+
T Consensus 81 D~~~~~s~~~~~~~~ 95 (168)
T cd04119 81 DVTDRQSFEALDSWL 95 (168)
T ss_pred ECCCHHHHHhHHHHH
Confidence 999999999999984
No 38
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.88 E-value=3.9e-22 Score=157.93 Aligned_cols=93 Identities=20% Similarity=0.383 Sum_probs=84.8
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEE
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illv 177 (193)
.+||+++|++|||||||+ +|+++.|. ++.+|++ +.+.+.+.+++..+.++||||+|+++|..+++.+++++|++|+|
T Consensus 1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (174)
T cd01871 1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 79 (174)
T ss_pred CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcce-eeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEE
Confidence 379999999999999999 99999998 7888886 44566788899999999999999999999999999999999999
Q ss_pred EECCChhhHHHHH-hcC
Q 029430 178 FDLTSRCTLNRFD-HNQ 193 (193)
Q Consensus 178 yDit~~~Sf~~l~-~W~ 193 (193)
||+++++||+++. .|+
T Consensus 80 ~d~~~~~sf~~~~~~~~ 96 (174)
T cd01871 80 FSLVSPASFENVRAKWY 96 (174)
T ss_pred EECCCHHHHHHHHHHHH
Confidence 9999999999995 573
No 39
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.87 E-value=4.2e-22 Score=155.24 Aligned_cols=93 Identities=24% Similarity=0.512 Sum_probs=88.5
Q ss_pred eEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEEE
Q 029430 101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 178 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illvy 178 (193)
+||+++|++|||||||+ ++++++|. .+.+|+|.++..+++..++..+.+++||++|+++|..++..++++++++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 79999999999999999 99999998 78889999888888888998999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHhcC
Q 029430 179 DLTSRCTLNRFDHNQ 193 (193)
Q Consensus 179 Dit~~~Sf~~l~~W~ 193 (193)
|+++++||+++.+|+
T Consensus 82 d~~~~~s~~~~~~~~ 96 (165)
T cd01865 82 DITNEESFNAVQDWS 96 (165)
T ss_pred ECCCHHHHHHHHHHH
Confidence 999999999999995
No 40
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.87 E-value=5.4e-22 Score=154.21 Aligned_cols=94 Identities=21% Similarity=0.459 Sum_probs=89.2
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEE
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illv 177 (193)
.+||+++|++|||||||+ +++++.|. .+.+|++.++..+.+.+++..+.+++||++|+++|..++..++++++++|+|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 489999999999999999 99999998 7788999999889999999999999999999999999999999999999999
Q ss_pred EECCChhhHHHHHhcC
Q 029430 178 FDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 178 yDit~~~Sf~~l~~W~ 193 (193)
||++|++||+++.+|+
T Consensus 82 ~d~~~~~s~~~l~~~~ 97 (166)
T cd01869 82 YDVTDQESFNNVKQWL 97 (166)
T ss_pred EECcCHHHHHhHHHHH
Confidence 9999999999999984
No 41
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.87 E-value=4.6e-22 Score=155.32 Aligned_cols=94 Identities=20% Similarity=0.475 Sum_probs=89.6
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEE
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illv 177 (193)
.+||+++|++|||||||+ +|.+++|. .+.+|+|.++..+.+.+++..+.+++||++|++++..++..+++++|++|+|
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v 82 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILV 82 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEE
Confidence 589999999999999999 99999999 7889999999888899999999999999999999999999999999999999
Q ss_pred EECCChhhHHHHHhcC
Q 029430 178 FDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 178 yDit~~~Sf~~l~~W~ 193 (193)
||+++++||+++.+|+
T Consensus 83 ~d~~~~~s~~~~~~~~ 98 (167)
T cd01867 83 YDITDEKSFENIRNWM 98 (167)
T ss_pred EECcCHHHHHhHHHHH
Confidence 9999999999999985
No 42
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.87 E-value=4.2e-22 Score=162.75 Aligned_cols=93 Identities=25% Similarity=0.477 Sum_probs=87.8
Q ss_pred eEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECC-eEEEEEEEeCCCCCCCCcchhhhccCCcEEEEE
Q 029430 101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQG-ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~-~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illv 177 (193)
+||+++|++|||||||+ +|+++.|. .+.+|+|.+++.+.+.+++ ..+.++|||++|++.+..+++.|++++|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 59999999999999999 99999998 7889999999989998865 579999999999999999999999999999999
Q ss_pred EECCChhhHHHHHhcC
Q 029430 178 FDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 178 yDit~~~Sf~~l~~W~ 193 (193)
||+++++||+++.+|+
T Consensus 81 ~D~t~~~s~~~~~~w~ 96 (215)
T cd04109 81 YDVTNSQSFENLEDWY 96 (215)
T ss_pred EECCCHHHHHHHHHHH
Confidence 9999999999999984
No 43
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.87 E-value=6.4e-22 Score=159.72 Aligned_cols=94 Identities=19% Similarity=0.442 Sum_probs=89.8
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEE
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illv 177 (193)
.+||+++|++|||||||+ +|++++|. .+.+|+|.++..+.+.+++..+.+.|||++|++.|..++..++++++++|+|
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv 85 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIVV 85 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEEE
Confidence 689999999999999999 99999998 7889999999889999999999999999999999999999999999999999
Q ss_pred EECCChhhHHHHHhcC
Q 029430 178 FDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 178 yDit~~~Sf~~l~~W~ 193 (193)
||+++++||+++.+|+
T Consensus 86 ~D~~~~~s~~~~~~~~ 101 (199)
T cd04110 86 YDVTNGESFVNVKRWL 101 (199)
T ss_pred EECCCHHHHHHHHHHH
Confidence 9999999999999985
No 44
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.87 E-value=8.1e-22 Score=153.42 Aligned_cols=93 Identities=27% Similarity=0.451 Sum_probs=87.3
Q ss_pred eEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEEE
Q 029430 101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 178 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illvy 178 (193)
+||+++|++|||||||+ +|++++|. .+.++.+.+++.+.+.+++..+.+++|||+|+++|..+++.+++++|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 59999999999999999 99999998 66778888888888889999999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHhcC
Q 029430 179 DLTSRCTLNRFDHNQ 193 (193)
Q Consensus 179 Dit~~~Sf~~l~~W~ 193 (193)
|++++.+|+++++|+
T Consensus 81 d~~~~~s~~~~~~~~ 95 (161)
T cd04124 81 DVTRKITYKNLSKWY 95 (161)
T ss_pred ECCCHHHHHHHHHHH
Confidence 999999999999884
No 45
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.87 E-value=4.8e-22 Score=156.43 Aligned_cols=95 Identities=28% Similarity=0.527 Sum_probs=87.8
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEEC----------CeEEEEEEEeCCCCCCCCcchhh
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQ----------GARIAFSIWDVGGDSRSFDHVPI 166 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~----------~~~v~l~iwD~~G~e~~~~~~~~ 166 (193)
..+||+++|++|||||||+ +|.++.|. .+.+|+|.++..+.+.++ +..+.++|||++|+++|..++..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 3689999999999999999 99999998 788899999987777765 46799999999999999999999
Q ss_pred hccCCcEEEEEEECCChhhHHHHHhcC
Q 029430 167 ACKDAVAILFMFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 167 ~~~~a~~illvyDit~~~Sf~~l~~W~ 193 (193)
++++++++|+|||+++++||+++.+|+
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~ 109 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNVRNWM 109 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHH
Confidence 999999999999999999999999985
No 46
>PTZ00369 Ras-like protein; Provisional
Probab=99.87 E-value=9.1e-22 Score=157.36 Aligned_cols=94 Identities=14% Similarity=0.234 Sum_probs=87.4
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEE
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 176 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~ill 176 (193)
..+||+++|++|||||||+ +|++++|. .+.+|++.++ .+.+.+++..+.++||||+|+++|..++..|+++++++|+
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 3689999999999999999 99999998 7778888666 5788899999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHhcC
Q 029430 177 MFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 177 vyDit~~~Sf~~l~~W~ 193 (193)
|||+++++||+++.+|+
T Consensus 83 v~D~s~~~s~~~~~~~~ 99 (189)
T PTZ00369 83 VYSITSRSSFEEIASFR 99 (189)
T ss_pred EEECCCHHHHHHHHHHH
Confidence 99999999999999884
No 47
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.87 E-value=9.2e-22 Score=153.48 Aligned_cols=95 Identities=26% Similarity=0.479 Sum_probs=90.1
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEE
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 176 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~ill 176 (193)
..+||+++|++|||||||+ +|+++.|. .+.+++|.++..+.+.+++..+.++|||++|++++..++..++++++++|+
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLL 83 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEE
Confidence 4799999999999999999 99999998 778899999888899999999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHhcC
Q 029430 177 MFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 177 vyDit~~~Sf~~l~~W~ 193 (193)
|||+++++||+.+.+|.
T Consensus 84 v~d~~~~~s~~~~~~~~ 100 (170)
T cd04116 84 TFAVDDSQSFQNLSNWK 100 (170)
T ss_pred EEECCCHHHHHhHHHHH
Confidence 99999999999999884
No 48
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=2e-23 Score=162.87 Aligned_cols=95 Identities=28% Similarity=0.514 Sum_probs=89.9
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEEC---------CeEEEEEEEeCCCCCCCCcchhhh
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQ---------GARIAFSIWDVGGDSRSFDHVPIA 167 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~---------~~~v~l~iwD~~G~e~~~~~~~~~ 167 (193)
..+|++.+||+|||||||+ +|.++.|. +...|+|+||..|.+.++ +.++.+++|||+|||+|+++...|
T Consensus 8 ylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAF 87 (219)
T KOG0081|consen 8 YLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAF 87 (219)
T ss_pred HHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHH
Confidence 3679999999999999999 99999999 899999999999999885 457999999999999999999999
Q ss_pred ccCCcEEEEEEECCChhhHHHHHhcC
Q 029430 168 CKDAVAILFMFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 168 ~~~a~~illvyDit~~~Sf~~l~~W~ 193 (193)
+++|-+||++||+|+..||-++.+|+
T Consensus 88 fRDAMGFlLiFDlT~eqSFLnvrnWl 113 (219)
T KOG0081|consen 88 FRDAMGFLLIFDLTSEQSFLNVRNWL 113 (219)
T ss_pred HHhhccceEEEeccchHHHHHHHHHH
Confidence 99999999999999999999999996
No 49
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.87 E-value=6.9e-22 Score=161.50 Aligned_cols=94 Identities=21% Similarity=0.505 Sum_probs=88.4
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEE-CCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEE
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMV-QGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 176 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v-~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~ill 176 (193)
.+||+++|++|||||||+ +|++++|. .+.+|+|.++..+.+.+ ++..+.+++||++|++.|..++..++++++++|+
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 589999999999999999 99999998 67789999999898888 4678999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHhcC
Q 029430 177 MFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 177 vyDit~~~Sf~~l~~W~ 193 (193)
|||++|++||+++.+|+
T Consensus 82 v~D~~~~~Sf~~l~~~~ 98 (211)
T cd04111 82 VFDITNRESFEHVHDWL 98 (211)
T ss_pred EEECCCHHHHHHHHHHH
Confidence 99999999999999985
No 50
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.86 E-value=1e-21 Score=152.38 Aligned_cols=93 Identities=17% Similarity=0.302 Sum_probs=85.8
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEE
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illv 177 (193)
++||+++|++|||||||+ +|+.+.|. .+.+|++..+ .+.+.+++..+.++||||+|+++|..+++.++++++++|+|
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV 79 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence 479999999999999999 99999998 6778887655 57788999999999999999999999999999999999999
Q ss_pred EECCChhhHHHHHhcC
Q 029430 178 FDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 178 yDit~~~Sf~~l~~W~ 193 (193)
||+++++||+++.+|+
T Consensus 80 ~d~~~~~s~~~~~~~~ 95 (164)
T cd04175 80 YSITAQSTFNDLQDLR 95 (164)
T ss_pred EECCCHHHHHHHHHHH
Confidence 9999999999999884
No 51
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.86 E-value=9.7e-22 Score=156.60 Aligned_cols=93 Identities=22% Similarity=0.434 Sum_probs=88.6
Q ss_pred eEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEEE
Q 029430 101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 178 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illvy 178 (193)
+||+++|++|||||||+ +|+++.|. .+.+|+|.++..+.+.+++..+.+++||++|+++|..+++.+++++|++|+||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 59999999999999999 99999998 68899999998888999999999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHhcC
Q 029430 179 DLTSRCTLNRFDHNQ 193 (193)
Q Consensus 179 Dit~~~Sf~~l~~W~ 193 (193)
|+++++||+++.+|+
T Consensus 81 d~~~~~s~~~i~~~~ 95 (188)
T cd04125 81 DVTDQESFENLKFWI 95 (188)
T ss_pred ECcCHHHHHHHHHHH
Confidence 999999999999985
No 52
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.86 E-value=1.7e-21 Score=152.86 Aligned_cols=93 Identities=26% Similarity=0.413 Sum_probs=87.9
Q ss_pred eEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEEE
Q 029430 101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 178 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illvy 178 (193)
+||+++|++|||||||+ +++.+.|. .+.+|++.++....+..++..+.+.+|||+|++.+..++..+++++|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 59999999999999999 99999988 78899999998888888899999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHhcC
Q 029430 179 DLTSRCTLNRFDHNQ 193 (193)
Q Consensus 179 Dit~~~Sf~~l~~W~ 193 (193)
|+++++||+++++|+
T Consensus 81 d~~~~~s~~~~~~~~ 95 (166)
T cd00877 81 DVTSRVTYKNVPNWH 95 (166)
T ss_pred ECCCHHHHHHHHHHH
Confidence 999999999999884
No 53
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.86 E-value=5.7e-22 Score=160.36 Aligned_cols=94 Identities=18% Similarity=0.333 Sum_probs=86.7
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEEC-CeEEEEEEEeCCCCCCCCcchhhhccCCcEEE
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQ-GARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~-~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~il 175 (193)
..+|+|+|||++||||+|+ .|..+.|+ +|.||+- |-+...+.++ |+.+.+.+|||+|||+|..+++..|.++|+||
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl 81 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL 81 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence 4789999999999999999 99999999 8888885 6678889995 99999999999999999999999999999999
Q ss_pred EEEECCChhhHHHH-HhcC
Q 029430 176 FMFDLTSRCTLNRF-DHNQ 193 (193)
Q Consensus 176 lvyDit~~~Sf~~l-~~W~ 193 (193)
+||++.+++||+++ .+|+
T Consensus 82 ~cfsv~~p~S~~nv~~kW~ 100 (198)
T KOG0393|consen 82 LCFSVVSPESFENVKSKWI 100 (198)
T ss_pred EEEEcCChhhHHHHHhhhh
Confidence 99999999999996 5563
No 54
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.86 E-value=2.1e-21 Score=154.92 Aligned_cols=93 Identities=27% Similarity=0.433 Sum_probs=87.9
Q ss_pred eEEEEECCCCCChhhHH-hhhcCccc--cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEE
Q 029430 101 LKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~~~f~--~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illv 177 (193)
+||+++|++|||||||+ +|++++|. .+.+|+|.++..+.+.+++..+.+++||++|++++..++..+++++|++|+|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 59999999999999999 99999997 4888999999888999999999999999999999999999999999999999
Q ss_pred EECCChhhHHHHHhcC
Q 029430 178 FDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 178 yDit~~~Sf~~l~~W~ 193 (193)
||+++++||+++..|+
T Consensus 81 ~d~~~~~s~~~~~~~~ 96 (193)
T cd04118 81 YDLTDSSSFERAKFWV 96 (193)
T ss_pred EECCCHHHHHHHHHHH
Confidence 9999999999998884
No 55
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.86 E-value=1.1e-21 Score=164.38 Aligned_cols=92 Identities=17% Similarity=0.335 Sum_probs=85.8
Q ss_pred eEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEEE
Q 029430 101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 178 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illvy 178 (193)
+||+++|++|||||||+ +|++++|. .+.+|++ +++.+.+.++++.+.++||||+|++.|..++..++.++|++|+||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 59999999999999999 99999998 7778886 777788999999999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHhcC
Q 029430 179 DLTSRCTLNRFDHNQ 193 (193)
Q Consensus 179 Dit~~~Sf~~l~~W~ 193 (193)
|+++++||+++.+|+
T Consensus 80 dv~~~~Sf~~i~~~~ 94 (247)
T cd04143 80 SLDNRESFEEVCRLR 94 (247)
T ss_pred eCCCHHHHHHHHHHH
Confidence 999999999998873
No 56
>PLN03110 Rab GTPase; Provisional
Probab=99.86 E-value=2.4e-21 Score=158.75 Aligned_cols=95 Identities=28% Similarity=0.496 Sum_probs=90.9
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEE
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 176 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~ill 176 (193)
..+||+++|++|||||||+ +|+++.|. ++.+|+|.++..+.+.+++..+.++|||++|+++|..++..++++++++|+
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~il 90 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 90 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEE
Confidence 4689999999999999999 99999998 788999999999999999999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHhcC
Q 029430 177 MFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 177 vyDit~~~Sf~~l~~W~ 193 (193)
|||+++++||+++.+|+
T Consensus 91 v~d~~~~~s~~~~~~~~ 107 (216)
T PLN03110 91 VYDITKRQTFDNVQRWL 107 (216)
T ss_pred EEECCChHHHHHHHHHH
Confidence 99999999999999995
No 57
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.86 E-value=2.4e-21 Score=155.11 Aligned_cols=92 Identities=23% Similarity=0.335 Sum_probs=84.1
Q ss_pred eEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEEE
Q 029430 101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 178 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illvy 178 (193)
.||+++|++|||||||+ +|.++.|. .+.||++.++. +.+.+++..+.++|||++|+++|..+++.++++++++|+||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~ 79 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF 79 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence 38999999999999999 99999998 67888887764 66778999999999999999999999999999999999999
Q ss_pred ECCChhhHHHHH-hcC
Q 029430 179 DLTSRCTLNRFD-HNQ 193 (193)
Q Consensus 179 Dit~~~Sf~~l~-~W~ 193 (193)
|+++++||+++. .|+
T Consensus 80 dv~~~~sf~~~~~~~~ 95 (189)
T cd04134 80 SVDSPDSLENVESKWL 95 (189)
T ss_pred ECCCHHHHHHHHHHHH
Confidence 999999999986 574
No 58
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.86 E-value=2.2e-21 Score=152.08 Aligned_cols=94 Identities=23% Similarity=0.504 Sum_probs=88.3
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCC-cchhhhccCCcEEEE
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF-DHVPIACKDAVAILF 176 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~-~~~~~~~~~a~~ill 176 (193)
.+||+++|++|||||||+ +|+.+.|. .+.++++.++..+.+.+++..+.++|||++|+++|. .+++.+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 489999999999999999 99999998 788899999999999999999999999999999987 578899999999999
Q ss_pred EEECCChhhHHHHHhcC
Q 029430 177 MFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 177 vyDit~~~Sf~~l~~W~ 193 (193)
|||+++++||+++..|+
T Consensus 82 v~d~~~~~s~~~~~~~~ 98 (170)
T cd04115 82 VYDVTNMASFHSLPSWI 98 (170)
T ss_pred EEECCCHHHHHhHHHHH
Confidence 99999999999999984
No 59
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.86 E-value=1.8e-21 Score=150.04 Aligned_cols=93 Identities=17% Similarity=0.412 Sum_probs=87.5
Q ss_pred eEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEEC--CeEEEEEEEeCCCCCCCCcchhhhccCCcEEEE
Q 029430 101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQ--GARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 176 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~--~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~ill 176 (193)
+||+++|++|||||||+ ++.++.|. ++.+|++.++..+.+.++ +..+.+++||++|+++|..++..++++++++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 59999999999999999 99999998 788899999988888887 788999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHhcC
Q 029430 177 MFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 177 vyDit~~~Sf~~l~~W~ 193 (193)
|||+++++||+++..|+
T Consensus 81 v~d~~~~~s~~~l~~~~ 97 (162)
T cd04106 81 VFSTTDRESFEAIESWK 97 (162)
T ss_pred EEECCCHHHHHHHHHHH
Confidence 99999999999999984
No 60
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.86 E-value=1.2e-21 Score=152.25 Aligned_cols=98 Identities=56% Similarity=0.910 Sum_probs=94.7
Q ss_pred CCCceeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCc
Q 029430 95 DSDLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAV 172 (193)
Q Consensus 95 ~~~~~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~ 172 (193)
..+..++||-++||+.+|||||+ +|++++++ ++..+.|++++.+++.+.|..+.+.|||.+||+++..+.+..++++.
T Consensus 15 ~~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsv 94 (205)
T KOG1673|consen 15 VSNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSV 94 (205)
T ss_pred cccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcE
Confidence 36678999999999999999999 99999998 78889999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHhc
Q 029430 173 AILFMFDLTSRCTLNRFDHN 192 (193)
Q Consensus 173 ~illvyDit~~~Sf~~l~~W 192 (193)
+++++||+|.+++++++.+|
T Consensus 95 aIlFmFDLt~r~TLnSi~~W 114 (205)
T KOG1673|consen 95 AILFMFDLTRRSTLNSIKEW 114 (205)
T ss_pred EEEEEEecCchHHHHHHHHH
Confidence 99999999999999999999
No 61
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.86 E-value=4.5e-21 Score=150.92 Aligned_cols=95 Identities=13% Similarity=0.112 Sum_probs=88.6
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccc--cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEE
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~--~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~il 175 (193)
..+|++++|++|||||||+ +|+++.|. ++.+|++.++..+.+.+++..+.+.+||++|++.+..++..+++++|++|
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~l 82 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVAC 82 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEE
Confidence 4689999999999999999 99999996 67789999988888999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHhcC
Q 029430 176 FMFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 176 lvyDit~~~Sf~~l~~W~ 193 (193)
+|||+++++||+++.+|+
T Consensus 83 lv~d~~~~~s~~~~~~~~ 100 (169)
T cd01892 83 LVYDSSDPKSFSYCAEVY 100 (169)
T ss_pred EEEeCCCHHHHHHHHHHH
Confidence 999999999999998874
No 62
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.85 E-value=3e-21 Score=147.96 Aligned_cols=93 Identities=15% Similarity=0.249 Sum_probs=84.9
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEE
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illv 177 (193)
++||+++|++|||||||+ +|++++|. .+.+|++..+ .+.+.+++..+.+++||++|+++|..++..|+++++++++|
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v 79 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 79 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence 479999999999999999 99999998 7777887554 67788899999999999999999999999999999999999
Q ss_pred EECCChhhHHHHHhcC
Q 029430 178 FDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 178 yDit~~~Sf~~l~~W~ 193 (193)
||++++++|+++.+|+
T Consensus 80 ~~~~~~~s~~~~~~~~ 95 (162)
T cd04138 80 FAINSRKSFEDIHTYR 95 (162)
T ss_pred EECCCHHHHHHHHHHH
Confidence 9999999999998873
No 63
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.85 E-value=1.9e-21 Score=158.24 Aligned_cols=88 Identities=24% Similarity=0.380 Sum_probs=84.5
Q ss_pred ECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEEEECCCh
Q 029430 106 LGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR 183 (193)
Q Consensus 106 lGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illvyDit~~ 183 (193)
+|++|||||||+ +|+++.|. .+.+|+|.++..+.+.+++..+.++|||++|+++|..+++.||++++++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 699999999999 99999998 7889999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhcC
Q 029430 184 CTLNRFDHNQ 193 (193)
Q Consensus 184 ~Sf~~l~~W~ 193 (193)
+||++++.|+
T Consensus 81 ~S~~~i~~w~ 90 (200)
T smart00176 81 VTYKNVPNWH 90 (200)
T ss_pred HHHHHHHHHH
Confidence 9999999994
No 64
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.85 E-value=2.3e-21 Score=150.68 Aligned_cols=95 Identities=27% Similarity=0.487 Sum_probs=89.2
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEE
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 176 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~ill 176 (193)
..+||+++|++|+|||||+ +++++.|. .+.+|.+.++..+.+.+++..+.+++||++|++++..++..+++++|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 3689999999999999999 99999998 677899988888899999988999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHhcC
Q 029430 177 MFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 177 vyDit~~~Sf~~l~~W~ 193 (193)
|||+++++||+++++|+
T Consensus 82 v~d~~~~~s~~~~~~~~ 98 (165)
T cd01864 82 AYDITRRSSFESVPHWI 98 (165)
T ss_pred EEECcCHHHHHhHHHHH
Confidence 99999999999999995
No 65
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.85 E-value=3.3e-21 Score=148.87 Aligned_cols=93 Identities=24% Similarity=0.466 Sum_probs=88.3
Q ss_pred eEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEEE
Q 029430 101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 178 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illvy 178 (193)
+||+++|++|||||||+ +++++++. .+.++.+.++..+.+.+++..+.+++||++|+++|..+++.++++++++|+||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 69999999999999999 99999998 77889999998899999999999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHhcC
Q 029430 179 DLTSRCTLNRFDHNQ 193 (193)
Q Consensus 179 Dit~~~Sf~~l~~W~ 193 (193)
|++++++|+++.+|+
T Consensus 81 d~~~~~s~~~~~~~~ 95 (161)
T cd04113 81 DITNRTSFEALPTWL 95 (161)
T ss_pred ECCCHHHHHHHHHHH
Confidence 999999999999984
No 66
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=7.7e-22 Score=151.63 Aligned_cols=95 Identities=22% Similarity=0.423 Sum_probs=91.6
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEE
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 176 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~ill 176 (193)
.-+|.+++||-||||++|+ +|...+|. +...|+|++|..+.+++.|..++++||||+|||+|+.....||+++.+.++
T Consensus 10 yifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalm 89 (215)
T KOG0097|consen 10 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 89 (215)
T ss_pred heEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeE
Confidence 4689999999999999999 99999999 666799999999999999999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHhcC
Q 029430 177 MFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 177 vyDit~~~Sf~~l~~W~ 193 (193)
|||++.+++++.+..||
T Consensus 90 vyditrrstynhlsswl 106 (215)
T KOG0097|consen 90 VYDITRRSTYNHLSSWL 106 (215)
T ss_pred EEEehhhhhhhhHHHHH
Confidence 99999999999999996
No 67
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.85 E-value=3.8e-21 Score=149.07 Aligned_cols=94 Identities=26% Similarity=0.506 Sum_probs=89.6
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEE
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illv 177 (193)
.+||+++|++|||||||+ ++.+++|. .+.++++.++..+.+.+++..+.+++||++|+++|..+++.++++++++|+|
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 82 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 82 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence 489999999999999999 99999998 8889999999899999999999999999999999999999999999999999
Q ss_pred EECCChhhHHHHHhcC
Q 029430 178 FDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 178 yDit~~~Sf~~l~~W~ 193 (193)
||+++++||+++.+|+
T Consensus 83 ~d~~~~~s~~~~~~~~ 98 (165)
T cd01868 83 YDITKKQTFENVERWL 98 (165)
T ss_pred EECcCHHHHHHHHHHH
Confidence 9999999999999984
No 68
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.85 E-value=5.3e-21 Score=149.48 Aligned_cols=87 Identities=23% Similarity=0.378 Sum_probs=76.2
Q ss_pred eEEEEECCCCCChhhHH-hhhcCccccccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEEEE
Q 029430 101 LKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD 179 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~~~f~~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illvyD 179 (193)
+||+++|++|||||||+ +|+++.|.+.+++++.++ .+.+.+++..+.++|||++|++. ..+++++|++++|||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d 74 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFS 74 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEE
Confidence 58999999999999999 999999984445555555 47889999999999999999986 347889999999999
Q ss_pred CCChhhHHHHHhcC
Q 029430 180 LTSRCTLNRFDHNQ 193 (193)
Q Consensus 180 it~~~Sf~~l~~W~ 193 (193)
++|++||+++.+|+
T Consensus 75 ~~~~~sf~~~~~~~ 88 (158)
T cd04103 75 LENEASFQTVYNLY 88 (158)
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999999884
No 69
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.85 E-value=6e-21 Score=150.00 Aligned_cols=92 Identities=22% Similarity=0.386 Sum_probs=83.3
Q ss_pred eEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEEE
Q 029430 101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 178 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illvy 178 (193)
+|++++|++|||||||+ +|+++.|. ++.+|. .+.+...+.+++..+.+++||++|+++|..+++.+++++|++|+||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 59999999999999999 99999998 666665 5666778889999999999999999999999999999999999999
Q ss_pred ECCChhhHHHHH-hcC
Q 029430 179 DLTSRCTLNRFD-HNQ 193 (193)
Q Consensus 179 Dit~~~Sf~~l~-~W~ 193 (193)
|+++++||+++. .|+
T Consensus 80 d~~~~~sf~~~~~~~~ 95 (173)
T cd04130 80 SVVNPSSFQNISEKWI 95 (173)
T ss_pred ECCCHHHHHHHHHHHH
Confidence 999999999985 574
No 70
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.85 E-value=5.3e-21 Score=149.62 Aligned_cols=94 Identities=20% Similarity=0.402 Sum_probs=89.0
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEE
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illv 177 (193)
.+||+++|++|||||||+ +++++++. .+.++.|.++..+.+.+++..+.+.|||++|+++|..+...+++++|++|+|
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v 83 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV 83 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence 589999999999999999 99999988 6778989999889999999999999999999999999999999999999999
Q ss_pred EECCChhhHHHHHhcC
Q 029430 178 FDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 178 yDit~~~Sf~~l~~W~ 193 (193)
||+++++||+++..|+
T Consensus 84 ~d~~~~~s~~~~~~~~ 99 (168)
T cd01866 84 YDITRRETFNHLTSWL 99 (168)
T ss_pred EECCCHHHHHHHHHHH
Confidence 9999999999999985
No 71
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.85 E-value=3e-21 Score=154.46 Aligned_cols=91 Identities=20% Similarity=0.301 Sum_probs=83.7
Q ss_pred EEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEEEE
Q 029430 102 KISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD 179 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illvyD 179 (193)
||+++|++|||||||+ +|+.++|. .+.+|++..+ .+.+.+++..+.++||||+|+++|..++..|++++|++|+|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 7999999999999999 99999998 6777887655 4667889999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHhcC
Q 029430 180 LTSRCTLNRFDHNQ 193 (193)
Q Consensus 180 it~~~Sf~~l~~W~ 193 (193)
+++++||+++.+|+
T Consensus 80 ~~~~~s~~~~~~~~ 93 (190)
T cd04144 80 ITSRSTFERVERFR 93 (190)
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999999884
No 72
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.85 E-value=4.9e-21 Score=153.37 Aligned_cols=93 Identities=26% Similarity=0.534 Sum_probs=87.5
Q ss_pred eEEEEECCCCCChhhHH-hhhcCccc--cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEE
Q 029430 101 LKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~~~f~--~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illv 177 (193)
+||+++|++|||||||+ +|++++|. .+.+|++.++..+.+.+++..+.++||||+|++++..++..+++++|++|+|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 59999999999999999 99999996 5778999999888889999999999999999999999999999999999999
Q ss_pred EECCChhhHHHHHhcC
Q 029430 178 FDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 178 yDit~~~Sf~~l~~W~ 193 (193)
||+++++||+++..|+
T Consensus 81 ~D~~~~~s~~~~~~~~ 96 (191)
T cd04112 81 YDITNKASFDNIRAWL 96 (191)
T ss_pred EECCCHHHHHHHHHHH
Confidence 9999999999999884
No 73
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.84 E-value=8.1e-21 Score=150.63 Aligned_cols=92 Identities=20% Similarity=0.336 Sum_probs=82.7
Q ss_pred eEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEEC-CeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEE
Q 029430 101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQ-GARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~-~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illv 177 (193)
+||+++|++|||||||+ +|++++|. .+.+|++.++. ..+..+ +..+.++||||+|+++|..+++.+++++|++|+|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYV-TNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeE-EEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 59999999999999999 99999998 78888887764 446665 7889999999999999999999999999999999
Q ss_pred EECCChhhHHHHH-hcC
Q 029430 178 FDLTSRCTLNRFD-HNQ 193 (193)
Q Consensus 178 yDit~~~Sf~~l~-~W~ 193 (193)
||+++++||+++. .|+
T Consensus 80 ~d~~~~~s~~~~~~~~~ 96 (187)
T cd04132 80 YAVDNPTSLDNVEDKWF 96 (187)
T ss_pred EECCCHHHHHHHHHHHH
Confidence 9999999999986 473
No 74
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.84 E-value=9.5e-21 Score=156.35 Aligned_cols=89 Identities=26% Similarity=0.515 Sum_probs=81.3
Q ss_pred eEEEEECCCCCChhhHH-hhhcCccccccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEEEE
Q 029430 101 LKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD 179 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~~~f~~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illvyD 179 (193)
+||+++|++|||||||+ +|++++|.++.+|+|.++..+.+ ..+.+.|||++|++.|..++..|+++++++|+|||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~D 76 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYD 76 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEE
Confidence 59999999999999999 99999998778899988765443 45889999999999999999999999999999999
Q ss_pred CCChhhHHHHHhcC
Q 029430 180 LTSRCTLNRFDHNQ 193 (193)
Q Consensus 180 it~~~Sf~~l~~W~ 193 (193)
+++++||+++.+|+
T Consensus 77 vt~~~Sf~~l~~~~ 90 (220)
T cd04126 77 VSNVQSLEELEDRF 90 (220)
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999998873
No 75
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.84 E-value=8e-21 Score=146.95 Aligned_cols=93 Identities=20% Similarity=0.380 Sum_probs=85.2
Q ss_pred eEEEEECCCCCChhhHH-hhhcC--ccc-cccccceeeeEEEEEEEC-CeEEEEEEEeCCCCCCCCcchhhhccCCcEEE
Q 029430 101 LKISLLGDCQIGKTSFV-KYVGN--EQE-RSLQMAGLNLINKTLMVQ-GARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~~--~f~-~~~~t~g~~~~~~~i~v~-~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~il 175 (193)
+||+++|++|||||||+ ++.++ .|. ++.+|+|.++..+.+.++ +..+.+.+||++|++.+..++..+++++|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 59999999999999999 99865 677 788899999988888776 57799999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHhcC
Q 029430 176 FMFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 176 lvyDit~~~Sf~~l~~W~ 193 (193)
+|||+++++||+++++|+
T Consensus 81 ~v~d~~~~~s~~~~~~~~ 98 (164)
T cd04101 81 LVYDVSNKASFENCSRWV 98 (164)
T ss_pred EEEECcCHHHHHHHHHHH
Confidence 999999999999999884
No 76
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.84 E-value=1.1e-20 Score=145.52 Aligned_cols=93 Identities=23% Similarity=0.511 Sum_probs=88.4
Q ss_pred eEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEEE
Q 029430 101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 178 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illvy 178 (193)
+||+++|++|||||||+ +++++++. .+.++.+.++..+.+.+++..+.+++||++|++++..++..++++++++|+||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 59999999999999999 99999998 78889999999999999998899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHhcC
Q 029430 179 DLTSRCTLNRFDHNQ 193 (193)
Q Consensus 179 Dit~~~Sf~~l~~W~ 193 (193)
|+++++||+++.+|+
T Consensus 81 d~~~~~s~~~~~~~~ 95 (161)
T cd01861 81 DITNRQSFDNTDKWI 95 (161)
T ss_pred ECcCHHHHHHHHHHH
Confidence 999999999999885
No 77
>PLN03118 Rab family protein; Provisional
Probab=99.84 E-value=2.7e-20 Score=151.36 Aligned_cols=93 Identities=29% Similarity=0.550 Sum_probs=87.8
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccccccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEE
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illv 177 (193)
..+||+++|++|||||||+ +|+++.+.++.++.|.++..+.+.+++..+.+.||||+|+++|..++..++++++++|+|
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv 92 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIILV 92 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence 3799999999999999999 999998888889999999888888999999999999999999999999999999999999
Q ss_pred EECCChhhHHHHHh
Q 029430 178 FDLTSRCTLNRFDH 191 (193)
Q Consensus 178 yDit~~~Sf~~l~~ 191 (193)
||+++++||+++.+
T Consensus 93 ~D~~~~~sf~~~~~ 106 (211)
T PLN03118 93 YDVTRRETFTNLSD 106 (211)
T ss_pred EECCCHHHHHHHHH
Confidence 99999999999975
No 78
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.84 E-value=1.9e-20 Score=144.86 Aligned_cols=91 Identities=15% Similarity=0.262 Sum_probs=83.5
Q ss_pred eEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEEE
Q 029430 101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 178 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illvy 178 (193)
+||+++|++|||||||+ +++++.|. .+.+|++ +.+.+.+.+++..+.+++||++|+++|..++..++++++++++||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence 59999999999999999 99999998 6666775 455678888999999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHhc
Q 029430 179 DLTSRCTLNRFDHN 192 (193)
Q Consensus 179 Dit~~~Sf~~l~~W 192 (193)
|+++++||+++.+|
T Consensus 80 d~~~~~s~~~~~~~ 93 (164)
T smart00173 80 SITDRQSFEEIKKF 93 (164)
T ss_pred ECCCHHHHHHHHHH
Confidence 99999999999887
No 79
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.83 E-value=2.3e-20 Score=145.42 Aligned_cols=92 Identities=14% Similarity=0.248 Sum_probs=83.7
Q ss_pred eEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEEE
Q 029430 101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 178 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illvy 178 (193)
+||+++|++|||||||+ +|+++.|. .+.+|++..+ .+.+..++..+.+++||++|+++|..++..++++++++|+||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 79999999999999999 99999998 7777877544 566777888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHhcC
Q 029430 179 DLTSRCTLNRFDHNQ 193 (193)
Q Consensus 179 Dit~~~Sf~~l~~W~ 193 (193)
|+++++||+++.+|+
T Consensus 81 d~~~~~s~~~~~~~~ 95 (165)
T cd04140 81 SVTSKQSLEELKPIY 95 (165)
T ss_pred ECCCHHHHHHHHHHH
Confidence 999999999998873
No 80
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.83 E-value=2.3e-20 Score=144.04 Aligned_cols=94 Identities=28% Similarity=0.534 Sum_probs=89.1
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEE
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illv 177 (193)
++||+++|++|||||||+ +++++++. .+.++.|.++..+++.+++..+.+.+||++|++++...++.++++++++|+|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 489999999999999999 99999998 5888999989889999999999999999999999999999999999999999
Q ss_pred EECCChhhHHHHHhcC
Q 029430 178 FDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 178 yDit~~~Sf~~l~~W~ 193 (193)
||.+++++|+.+++|+
T Consensus 81 ~d~~~~~s~~~~~~~~ 96 (163)
T cd01860 81 YDITSEESFEKAKSWV 96 (163)
T ss_pred EECcCHHHHHHHHHHH
Confidence 9999999999999884
No 81
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.83 E-value=1.6e-20 Score=152.53 Aligned_cols=93 Identities=16% Similarity=0.273 Sum_probs=88.4
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEE
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 176 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~ill 176 (193)
..+||+++|.+|||||+|+ +|++++|. +|.||++ +.+.+.+.++++.+.+.|+||+|+++|..+...|++++++|++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l 80 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL 80 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence 3689999999999999999 99999999 8888887 7788999999999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHhc
Q 029430 177 MFDLTSRCTLNRFDHN 192 (193)
Q Consensus 177 vyDit~~~Sf~~l~~W 192 (193)
||+++|+.||+.+..+
T Consensus 81 Vysitd~~SF~~~~~l 96 (196)
T KOG0395|consen 81 VYSITDRSSFEEAKQL 96 (196)
T ss_pred EEECCCHHHHHHHHHH
Confidence 9999999999998765
No 82
>PLN03108 Rab family protein; Provisional
Probab=99.83 E-value=2.1e-20 Score=152.41 Aligned_cols=94 Identities=19% Similarity=0.370 Sum_probs=89.3
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEE
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illv 177 (193)
.+||+++|++|||||||+ +|++++|. .+.+|++.++..+.+.+++..+.+++||++|++.|..++..+++++|++|+|
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv 85 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEE
Confidence 699999999999999999 99999998 7788999999888999999999999999999999999999999999999999
Q ss_pred EECCChhhHHHHHhcC
Q 029430 178 FDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 178 yDit~~~Sf~~l~~W~ 193 (193)
||+++++||+++.+|+
T Consensus 86 ~D~~~~~s~~~l~~~~ 101 (210)
T PLN03108 86 YDITRRETFNHLASWL 101 (210)
T ss_pred EECCcHHHHHHHHHHH
Confidence 9999999999999884
No 83
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.83 E-value=2.6e-20 Score=150.85 Aligned_cols=92 Identities=18% Similarity=0.312 Sum_probs=74.6
Q ss_pred eeEEEEECCCCCChhhHH-h-hhcC-----ccc-ccccccee-eeEEEE--------EEECCeEEEEEEEeCCCCCCCCc
Q 029430 100 SLKISLLGDCQIGKTSFV-K-YVGN-----EQE-RSLQMAGL-NLINKT--------LMVQGARIAFSIWDVGGDSRSFD 162 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r-~~~~-----~f~-~~~~t~g~-~~~~~~--------i~v~~~~v~l~iwD~~G~e~~~~ 162 (193)
.+||+++|++|||||||+ + +.++ .|. ++.||+|. +.+... +.+++..+.++||||+|++++
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~-- 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK-- 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence 589999999999999999 5 4443 344 67789873 433322 267899999999999999873
Q ss_pred chhhhccCCcEEEEEEECCChhhHHHHH-hcC
Q 029430 163 HVPIACKDAVAILFMFDLTSRCTLNRFD-HNQ 193 (193)
Q Consensus 163 ~~~~~~~~a~~illvyDit~~~Sf~~l~-~W~ 193 (193)
+.+.+|++++++|+|||+++++||++++ .|+
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~ 111 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWY 111 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHH
Confidence 5677999999999999999999999997 484
No 84
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.83 E-value=3.9e-20 Score=142.69 Aligned_cols=93 Identities=15% Similarity=0.244 Sum_probs=84.7
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEE
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illv 177 (193)
.+||+++|++|||||||+ +|+++.+. ++.+|++..+ .+.+.+++..+.+++|||+|++++..++..++++++++++|
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 589999999999999999 99999988 6777777444 56778899999999999999999999999999999999999
Q ss_pred EECCChhhHHHHHhcC
Q 029430 178 FDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 178 yDit~~~Sf~~l~~W~ 193 (193)
||++++++|+++.+|+
T Consensus 81 ~d~~~~~s~~~~~~~~ 96 (164)
T cd04145 81 FSVTDRGSFEEVDKFH 96 (164)
T ss_pred EECCCHHHHHHHHHHH
Confidence 9999999999999883
No 85
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.83 E-value=3.8e-20 Score=144.65 Aligned_cols=90 Identities=20% Similarity=0.372 Sum_probs=81.5
Q ss_pred EEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEEEEC
Q 029430 103 ISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDL 180 (193)
Q Consensus 103 ivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illvyDi 180 (193)
|+++|++|||||||+ +|+++.|. .+.++++..+ ...+.+++..+.+++|||+|+++|..+++.+++++|++|+|||+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 589999999999999 99999998 6777776554 56788899999999999999999999999999999999999999
Q ss_pred CChhhHHHHH-hcC
Q 029430 181 TSRCTLNRFD-HNQ 193 (193)
Q Consensus 181 t~~~Sf~~l~-~W~ 193 (193)
++++||+++. .|+
T Consensus 80 ~~~~s~~~~~~~~~ 93 (174)
T smart00174 80 DSPASFENVKEKWY 93 (174)
T ss_pred CCHHHHHHHHHHHH
Confidence 9999999986 473
No 86
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.82 E-value=7.4e-20 Score=149.07 Aligned_cols=97 Identities=25% Similarity=0.409 Sum_probs=90.8
Q ss_pred CceeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEE
Q 029430 97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 174 (193)
Q Consensus 97 ~~~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~i 174 (193)
....+||+++|++|||||||+ +++.+.|. .+.+|+|.++....+..++..+.+++||++|+++|..++..++++++++
T Consensus 6 ~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~ 85 (215)
T PTZ00132 6 EVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCA 85 (215)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEE
Confidence 345799999999999999999 99999998 8899999999988888899999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHhcC
Q 029430 175 LFMFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 175 llvyDit~~~Sf~~l~~W~ 193 (193)
|+|||++++.||+++..|+
T Consensus 86 i~v~d~~~~~s~~~~~~~~ 104 (215)
T PTZ00132 86 IIMFDVTSRITYKNVPNWH 104 (215)
T ss_pred EEEEECcCHHHHHHHHHHH
Confidence 9999999999999999884
No 87
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.82 E-value=3.3e-20 Score=144.48 Aligned_cols=89 Identities=22% Similarity=0.393 Sum_probs=79.8
Q ss_pred eEEEEECCCCCChhhHH-hhhcCccccccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEEEE
Q 029430 101 LKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD 179 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~~~f~~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illvyD 179 (193)
+||+++|++|||||||+ ++..++|..+.||+|.++. .+..+ .+.+++||++|++++..+++.||+++|++|+|||
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~~~pt~g~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D 76 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 76 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcccCCCCCcceE--EEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEe
Confidence 59999999999999999 9999999888889988763 34443 5899999999999999999999999999999999
Q ss_pred CCChhhHHHHHhcC
Q 029430 180 LTSRCTLNRFDHNQ 193 (193)
Q Consensus 180 it~~~Sf~~l~~W~ 193 (193)
++++.+|+++.+|+
T Consensus 77 ~~~~~s~~~~~~~~ 90 (159)
T cd04150 77 SNDRERIGEAREEL 90 (159)
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999988763
No 88
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.82 E-value=3.5e-20 Score=146.66 Aligned_cols=90 Identities=22% Similarity=0.404 Sum_probs=81.0
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCccccccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEEE
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 178 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f~~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illvy 178 (193)
.+||+++|++|||||||+ ++..++|..+.||+|.++. .+..+ .+.+++||++|++++..++..|+++++++|+||
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~~~~~~t~~~~~~--~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~ 88 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVE--TVTYK--NISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVV 88 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCcCCccccceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCEEEEEE
Confidence 689999999999999999 9999988878899998874 34443 489999999999999999999999999999999
Q ss_pred ECCChhhHHHHHhcC
Q 029430 179 DLTSRCTLNRFDHNQ 193 (193)
Q Consensus 179 Dit~~~Sf~~l~~W~ 193 (193)
|++++++|+++.+|+
T Consensus 89 D~t~~~s~~~~~~~l 103 (175)
T smart00177 89 DSNDRDRIDEAREEL 103 (175)
T ss_pred ECCCHHHHHHHHHHH
Confidence 999999999988774
No 89
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.82 E-value=9.1e-20 Score=147.78 Aligned_cols=93 Identities=17% Similarity=0.288 Sum_probs=81.6
Q ss_pred eEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcc--------hhhhccC
Q 029430 101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH--------VPIACKD 170 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~--------~~~~~~~ 170 (193)
+||+++|++|||||||+ +|++++|. .+.||++.+++...+.+++..+.++||||+|.+.+... ...++++
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 59999999999999999 99999998 78889988888788889999999999999998765322 2345789
Q ss_pred CcEEEEEEECCChhhHHHHHhcC
Q 029430 171 AVAILFMFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 171 a~~illvyDit~~~Sf~~l~~W~ 193 (193)
+|++|+|||+++++||+++..|.
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~ 103 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLR 103 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHH
Confidence 99999999999999999998873
No 90
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.82 E-value=6e-20 Score=141.40 Aligned_cols=93 Identities=27% Similarity=0.527 Sum_probs=87.8
Q ss_pred eEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEEE
Q 029430 101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 178 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illvy 178 (193)
+||+++|++|+|||||+ ++.++.+. .+.++++.++....+.+++..+.+++||++|++++..++..+++.+|++|+||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 59999999999999999 99999988 77789999998889999999999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHhcC
Q 029430 179 DLTSRCTLNRFDHNQ 193 (193)
Q Consensus 179 Dit~~~Sf~~l~~W~ 193 (193)
|+++++||+.+..|+
T Consensus 81 d~~~~~s~~~~~~~l 95 (164)
T smart00175 81 DITNRESFENLKNWL 95 (164)
T ss_pred ECCCHHHHHHHHHHH
Confidence 999999999999884
No 91
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.81 E-value=1.3e-19 Score=141.52 Aligned_cols=92 Identities=21% Similarity=0.306 Sum_probs=85.1
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEE
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illv 177 (193)
++||+++|++|||||||+ +|.++.|. .+.+|++..+ .+.+.+++..+.+++||++|+++|..+++.+++.++++|+|
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv 79 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSY-RKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLV 79 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEE
Confidence 479999999999999999 99999998 6777887554 68888999999999999999999999999999999999999
Q ss_pred EECCChhhHHHHHhc
Q 029430 178 FDLTSRCTLNRFDHN 192 (193)
Q Consensus 178 yDit~~~Sf~~l~~W 192 (193)
||++++++|+++.+|
T Consensus 80 ~~~~~~~s~~~~~~~ 94 (168)
T cd04177 80 YSVTSEASLNELGEL 94 (168)
T ss_pred EECCCHHHHHHHHHH
Confidence 999999999999887
No 92
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.81 E-value=1.1e-19 Score=141.07 Aligned_cols=92 Identities=25% Similarity=0.458 Sum_probs=86.9
Q ss_pred eEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEEE
Q 029430 101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 178 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illvy 178 (193)
+||+++|++|||||||+ ++.++.+. .+.++++.++..+.+.+++..+.+++||++|++.+..++..++++++++|+||
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 59999999999999999 99999988 77788899998888999999999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHhc
Q 029430 179 DLTSRCTLNRFDHN 192 (193)
Q Consensus 179 Dit~~~Sf~~l~~W 192 (193)
|++++++|+++..|
T Consensus 81 d~~~~~~~~~~~~~ 94 (172)
T cd01862 81 DVTNPKSFESLDSW 94 (172)
T ss_pred ECCCHHHHHHHHHH
Confidence 99999999999887
No 93
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.81 E-value=1.3e-19 Score=141.81 Aligned_cols=91 Identities=21% Similarity=0.373 Sum_probs=82.8
Q ss_pred eEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEEE
Q 029430 101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 178 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illvy 178 (193)
.||+++|++|||||||+ +|.++.|. .+.+|++..+. ..+.+++..+.+.+|||+|+++|..++..+++++|++++||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 69999999999999999 99999998 67788876654 56788999999999999999999999989999999999999
Q ss_pred ECCChhhHHHHH-hc
Q 029430 179 DLTSRCTLNRFD-HN 192 (193)
Q Consensus 179 Dit~~~Sf~~l~-~W 192 (193)
|+++++||+++. .|
T Consensus 81 ~~~~~~s~~~~~~~~ 95 (175)
T cd01870 81 SIDSPDSLENIPEKW 95 (175)
T ss_pred ECCCHHHHHHHHHHH
Confidence 999999999985 46
No 94
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.81 E-value=8.3e-20 Score=145.45 Aligned_cols=95 Identities=23% Similarity=0.308 Sum_probs=84.9
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccccccccceeeeEEEEEEE-CCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEE
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMV-QGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 176 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~~~~~t~g~~~~~~~i~v-~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~ill 176 (193)
..+||+++|++|||||||+ ++..++|.++.||.|.++....+.+ ++..+.+++|||+|++++..++..++++++++|+
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence 4689999999999999999 9999999877889998887666665 4467999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHhcC
Q 029430 177 MFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 177 vyDit~~~Sf~~l~~W~ 193 (193)
|||.++.++|+.+..|+
T Consensus 82 v~D~~~~~~~~~~~~~~ 98 (183)
T cd04152 82 VVDSVDVERMEEAKTEL 98 (183)
T ss_pred EEECCCHHHHHHHHHHH
Confidence 99999999999887663
No 95
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.81 E-value=6.3e-20 Score=144.40 Aligned_cols=91 Identities=21% Similarity=0.376 Sum_probs=81.0
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccccccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEE
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illv 177 (193)
..+||+++|++|||||||+ ++..++|..+.||+|.++. .+.. ..+.+++||++|+++|..+++.++++++++|+|
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v 83 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV 83 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCccccCCcccceE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 3689999999999999999 9999988878889998764 3333 458999999999999999999999999999999
Q ss_pred EECCChhhHHHHHhcC
Q 029430 178 FDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 178 yDit~~~Sf~~l~~W~ 193 (193)
||++++.+|+++.+|+
T Consensus 84 ~D~t~~~s~~~~~~~~ 99 (168)
T cd04149 84 VDSADRDRIDEARQEL 99 (168)
T ss_pred EeCCchhhHHHHHHHH
Confidence 9999999999988763
No 96
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.81 E-value=8e-20 Score=145.80 Aligned_cols=91 Identities=22% Similarity=0.358 Sum_probs=80.7
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccccccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEE
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illv 177 (193)
..+||+++|+++||||||+ ++..++|..+.||+|.++. .+.. ..+.+++||++|++++..++..||+++|++|+|
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt~g~~~~--~~~~--~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V 91 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCccccCCcceeEE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 3689999999999999999 9999988877899998763 4444 458999999999999999999999999999999
Q ss_pred EECCChhhHHHHHhcC
Q 029430 178 FDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 178 yDit~~~Sf~~l~~W~ 193 (193)
||++++++|+++.+|+
T Consensus 92 ~D~s~~~s~~~~~~~l 107 (181)
T PLN00223 92 VDSNDRDRVVEARDEL 107 (181)
T ss_pred EeCCcHHHHHHHHHHH
Confidence 9999999999887663
No 97
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.81 E-value=2.2e-19 Score=138.50 Aligned_cols=93 Identities=27% Similarity=0.522 Sum_probs=87.1
Q ss_pred eEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEEE
Q 029430 101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 178 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illvy 178 (193)
+||+++|++|||||||+ ++.++.+. .+.++.+.++....+.+++..+.+.+||++|++.+..++..+++++|++|+||
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 69999999999999999 99999998 68889999988888888998999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHhcC
Q 029430 179 DLTSRCTLNRFDHNQ 193 (193)
Q Consensus 179 Dit~~~Sf~~l~~W~ 193 (193)
|+++++||+.+..|+
T Consensus 81 d~~~~~s~~~~~~~~ 95 (161)
T cd01863 81 DVTRRDTFTNLETWL 95 (161)
T ss_pred ECCCHHHHHhHHHHH
Confidence 999999999998884
No 98
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.80 E-value=2.8e-19 Score=139.75 Aligned_cols=91 Identities=16% Similarity=0.297 Sum_probs=82.0
Q ss_pred eEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEEE
Q 029430 101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 178 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illvy 178 (193)
+||+++|++|+|||||+ +|++++|. .+.++++ +.+...+.+++..+.+++||++|++.|..+++.++++++++|+||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 59999999999999999 99999998 6666765 444567888999999999999999999999999999999999999
Q ss_pred ECCChhhHHHHH-hc
Q 029430 179 DLTSRCTLNRFD-HN 192 (193)
Q Consensus 179 Dit~~~Sf~~l~-~W 192 (193)
|+++++||+++. .|
T Consensus 80 ~~~~~~s~~~~~~~~ 94 (174)
T cd04135 80 SVVNPASFQNVKEEW 94 (174)
T ss_pred ECCCHHHHHHHHHHH
Confidence 999999999985 45
No 99
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.80 E-value=2.5e-19 Score=147.47 Aligned_cols=91 Identities=15% Similarity=0.264 Sum_probs=80.3
Q ss_pred eEEEEECCCCCChhhHH-hhhcCccc--cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhcc-CCcEEEE
Q 029430 101 LKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACK-DAVAILF 176 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~~~f~--~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~-~a~~ill 176 (193)
+||+++|++|||||||+ +|++++|. .+.++.+.+++.+++.+++..+.+++||++|++ ..+...+++ ++|++|+
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence 59999999999999999 99999985 566666668888999999999999999999999 334556777 9999999
Q ss_pred EEECCChhhHHHHHhcC
Q 029430 177 MFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 177 vyDit~~~Sf~~l~~W~ 193 (193)
|||++|++||+++.+|+
T Consensus 79 V~d~td~~S~~~~~~~~ 95 (221)
T cd04148 79 VYSVTDRSSFERASELR 95 (221)
T ss_pred EEECCCHHHHHHHHHHH
Confidence 99999999999998884
No 100
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.80 E-value=1.4e-19 Score=141.85 Aligned_cols=87 Identities=16% Similarity=0.211 Sum_probs=78.6
Q ss_pred EEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEEEEC
Q 029430 103 ISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDL 180 (193)
Q Consensus 103 ivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illvyDi 180 (193)
|+++|++|||||||+ +|+++.|. .+.||+|.+. +.+++..+++++||++|+++|..+++.+++++|++|+|||.
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 77 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDS 77 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEEC
Confidence 799999999999999 99999888 7888998764 33456679999999999999999999999999999999999
Q ss_pred CChhhHHHHHhcC
Q 029430 181 TSRCTLNRFDHNQ 193 (193)
Q Consensus 181 t~~~Sf~~l~~W~ 193 (193)
+++.+|+++++|+
T Consensus 78 t~~~s~~~~~~~l 90 (164)
T cd04162 78 ADSERLPLARQEL 90 (164)
T ss_pred CCHHHHHHHHHHH
Confidence 9999999998874
No 101
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.80 E-value=1.6e-19 Score=144.02 Aligned_cols=90 Identities=21% Similarity=0.363 Sum_probs=80.4
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCccccccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEEE
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 178 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f~~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illvy 178 (193)
.+||+++|++|||||||+ ++..++|..+.||+|.++. .+.. ..+.+++||++|++++..+++.|++++|++|+||
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~ 92 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVE--TVEY--KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVV 92 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccccCCccccceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 589999999999999999 9999999877889987763 3444 4589999999999999999999999999999999
Q ss_pred ECCChhhHHHHHhcC
Q 029430 179 DLTSRCTLNRFDHNQ 193 (193)
Q Consensus 179 Dit~~~Sf~~l~~W~ 193 (193)
|++++++|+++.+|+
T Consensus 93 D~t~~~s~~~~~~~l 107 (182)
T PTZ00133 93 DSNDRERIGDAREEL 107 (182)
T ss_pred eCCCHHHHHHHHHHH
Confidence 999999999987663
No 102
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.80 E-value=2.4e-19 Score=139.28 Aligned_cols=91 Identities=15% Similarity=0.365 Sum_probs=79.7
Q ss_pred EEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCC-CCcchhhhccCCcEEEEEE
Q 029430 102 KISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR-SFDHVPIACKDAVAILFMF 178 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~-~~~~~~~~~~~a~~illvy 178 (193)
||+++|++|||||||+ +|+++.|. ++.++++..+ .+.+.+++..+.+++||++|++. +......+++++|++|+||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 7999999999999999 99999998 6777775444 56778899999999999999996 3456778899999999999
Q ss_pred ECCChhhHHHHHhcC
Q 029430 179 DLTSRCTLNRFDHNQ 193 (193)
Q Consensus 179 Dit~~~Sf~~l~~W~ 193 (193)
|+++++||+++++|+
T Consensus 80 d~~~~~s~~~~~~~~ 94 (165)
T cd04146 80 SITDRSSFDEISQLK 94 (165)
T ss_pred ECCCHHHHHHHHHHH
Confidence 999999999998884
No 103
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.79 E-value=5.7e-19 Score=137.18 Aligned_cols=95 Identities=23% Similarity=0.426 Sum_probs=88.7
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEE
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 176 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~ill 176 (193)
..+||+++|++|||||||+ ++.++.+. .+.++++.++..+.+.+++..+.+.+||++|++.|...+..+++.++++++
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 85 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALIL 85 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 3689999999999999999 99988888 778899999988899999999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHhcC
Q 029430 177 MFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 177 vyDit~~~Sf~~l~~W~ 193 (193)
|||++++++|+++.+|+
T Consensus 86 v~d~~~~~s~~~~~~~~ 102 (169)
T cd04114 86 TYDITCEESFRCLPEWL 102 (169)
T ss_pred EEECcCHHHHHHHHHHH
Confidence 99999999999998884
No 104
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.79 E-value=4.9e-19 Score=135.61 Aligned_cols=93 Identities=30% Similarity=0.558 Sum_probs=85.7
Q ss_pred eEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEEE
Q 029430 101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 178 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illvy 178 (193)
+||+++|++|||||||+ +++++.+. .+.++++.++....+.+++..+.+.+||++|++.+..+++.++++++++++||
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 69999999999999999 99999988 66678877887788888888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHhcC
Q 029430 179 DLTSRCTLNRFDHNQ 193 (193)
Q Consensus 179 Dit~~~Sf~~l~~W~ 193 (193)
|++++++|+.+..|+
T Consensus 81 d~~~~~s~~~~~~~~ 95 (162)
T cd04123 81 DITDADSFQKVKKWI 95 (162)
T ss_pred ECCCHHHHHHHHHHH
Confidence 999999999998873
No 105
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.79 E-value=5.3e-19 Score=138.69 Aligned_cols=88 Identities=24% Similarity=0.377 Sum_probs=79.3
Q ss_pred EEEEECCCCCChhhHH-hhhcCccccccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEEEEC
Q 029430 102 KISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDL 180 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~~~f~~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illvyDi 180 (193)
||+++|++|||||||+ +++++.|..+.+|+|.++. .+..+ .+.+++||++|++++..++..++++++++++|||+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~~~~T~~~~~~--~~~~~--~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 76 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVE--TVEYK--NLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDS 76 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCCcCCcCceeEE--EEEEC--CEEEEEEECCCChhcchHHHHHhccCCEEEEEEeC
Confidence 7899999999999999 9999988888889987774 34444 58999999999999999999999999999999999
Q ss_pred CChhhHHHHHhcC
Q 029430 181 TSRCTLNRFDHNQ 193 (193)
Q Consensus 181 t~~~Sf~~l~~W~ 193 (193)
+++++|+++.+|+
T Consensus 77 s~~~s~~~~~~~~ 89 (169)
T cd04158 77 SHRDRVSEAHSEL 89 (169)
T ss_pred CcHHHHHHHHHHH
Confidence 9999999998884
No 106
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.78 E-value=8e-19 Score=141.39 Aligned_cols=91 Identities=13% Similarity=0.312 Sum_probs=82.9
Q ss_pred EEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEEEE
Q 029430 102 KISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD 179 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illvyD 179 (193)
||+++|++|||||||+ +|++++|. .+.+|++ ++..+.+.+++..+.+++||++|++.|..++..++.++|++|+|||
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence 7999999999999999 99999998 5666765 5666788889988999999999999999999999999999999999
Q ss_pred CCChhhHHHHHhcC
Q 029430 180 LTSRCTLNRFDHNQ 193 (193)
Q Consensus 180 it~~~Sf~~l~~W~ 193 (193)
++++++|+++..|+
T Consensus 80 ~~~~~s~~~~~~~~ 93 (198)
T cd04147 80 VDDPESFEEVERLR 93 (198)
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999998873
No 107
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.77 E-value=1.4e-20 Score=149.45 Aligned_cols=94 Identities=17% Similarity=0.313 Sum_probs=91.3
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEE
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 176 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~ill 176 (193)
.-+|++++|.++|||+|++ ||+.|-|. +|..|+|.+|....+.++++.+.+.+||++|||++..+...||++|++.++
T Consensus 19 ~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vL 98 (246)
T KOG4252|consen 19 RAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVL 98 (246)
T ss_pred hhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceEE
Confidence 4789999999999999999 99999999 888899999999999999999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHhc
Q 029430 177 MFDLTSRCTLNRFDHN 192 (193)
Q Consensus 177 vyDit~~~Sf~~l~~W 192 (193)
||+-||+.||+.+.+|
T Consensus 99 VFSTTDr~SFea~~~w 114 (246)
T KOG4252|consen 99 VFSTTDRYSFEATLEW 114 (246)
T ss_pred EEecccHHHHHHHHHH
Confidence 9999999999999999
No 108
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.77 E-value=1.9e-18 Score=130.88 Aligned_cols=93 Identities=27% Similarity=0.548 Sum_probs=87.6
Q ss_pred eEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEEE
Q 029430 101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 178 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illvy 178 (193)
+||+++|.+|||||||+ ++.++.+. .+.+|.+.++....+.+++..+.+.+||++|++.+...+..+++++|++|+||
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999 99999998 66789999999999999998999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHhcC
Q 029430 179 DLTSRCTLNRFDHNQ 193 (193)
Q Consensus 179 Dit~~~Sf~~l~~W~ 193 (193)
|.+++++|+.+..|+
T Consensus 81 d~~~~~~~~~~~~~~ 95 (159)
T cd00154 81 DITNRESFENLDKWL 95 (159)
T ss_pred ECCCHHHHHHHHHHH
Confidence 999999999999884
No 109
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.77 E-value=9.3e-19 Score=141.87 Aligned_cols=94 Identities=26% Similarity=0.326 Sum_probs=85.9
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEE
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illv 177 (193)
.+||+++|++|||||||+ +|+++.|. .+.+|++.++.......++..+++.+|||+||++|+.+++.|+.+++++++|
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~ 84 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV 84 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 499999999999999999 99999999 7888989888888887777789999999999999999999999999999999
Q ss_pred EECCC-hhhHHHHHhcC
Q 029430 178 FDLTS-RCTLNRFDHNQ 193 (193)
Q Consensus 178 yDit~-~~Sf~~l~~W~ 193 (193)
||.++ ..+++..++|+
T Consensus 85 ~d~~~~~~~~~~~~~~~ 101 (219)
T COG1100 85 YDSTLRESSDELTEEWL 101 (219)
T ss_pred EecccchhhhHHHHHHH
Confidence 99999 66777778874
No 110
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.76 E-value=2.4e-18 Score=134.30 Aligned_cols=91 Identities=20% Similarity=0.306 Sum_probs=78.0
Q ss_pred eEEEEECCCCCChhhHH-hhhcCccccccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEEEE
Q 029430 101 LKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD 179 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~~~f~~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illvyD 179 (193)
.||+++|++|||||||+ +|++++|.+..++...++ .....+++..+.+++||++|++.+...+..+++.++++++|||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEI-TIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYS 79 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccce-EeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEE
Confidence 49999999999999999 999999984455444333 3555677888999999999999998888888999999999999
Q ss_pred CCChhhHHHHH-hc
Q 029430 180 LTSRCTLNRFD-HN 192 (193)
Q Consensus 180 it~~~Sf~~l~-~W 192 (193)
+++++||+++. .|
T Consensus 80 ~~~~~s~~~~~~~~ 93 (166)
T cd01893 80 VDRPSTLERIRTKW 93 (166)
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999985 46
No 111
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.76 E-value=3e-18 Score=134.62 Aligned_cols=91 Identities=25% Similarity=0.425 Sum_probs=79.7
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccccccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEE
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illv 177 (193)
..+||+++|++|||||||+ ++.++.+..+.+|+|... +.+.+++ +.+++||++|++.+..++..++++++++++|
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~~--~~~~~~~--~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQI--KTLEYEG--YKLNIWDVGGQKTLRPYWRNYFESTDALIWV 88 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEEE
Confidence 4689999999999999999 999886667788888554 4556664 8899999999999999999999999999999
Q ss_pred EECCChhhHHHHHhcC
Q 029430 178 FDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 178 yDit~~~Sf~~l~~W~ 193 (193)
||++++.+|+++..|+
T Consensus 89 ~d~~~~~s~~~~~~~~ 104 (173)
T cd04154 89 VDSSDRLRLDDCKREL 104 (173)
T ss_pred EECCCHHHHHHHHHHH
Confidence 9999999999987763
No 112
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.76 E-value=4.7e-18 Score=130.61 Aligned_cols=92 Identities=14% Similarity=0.241 Sum_probs=83.8
Q ss_pred eEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEEE
Q 029430 101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 178 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illvy 178 (193)
+||+++|++|||||||+ ++++++|. .+.++++.. +.+.+.+++..+.+.+||++|++.+..++..+++.++++++||
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADS-YRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhh-EEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 59999999999999999 99999998 677777644 4577788999999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHhcC
Q 029430 179 DLTSRCTLNRFDHNQ 193 (193)
Q Consensus 179 Dit~~~Sf~~l~~W~ 193 (193)
|+++++||+++.+|.
T Consensus 80 d~~~~~s~~~~~~~~ 94 (164)
T cd04139 80 SITDMESFTATAEFR 94 (164)
T ss_pred ECCCHHHHHHHHHHH
Confidence 999999999998873
No 113
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.75 E-value=2.9e-18 Score=126.44 Aligned_cols=91 Identities=26% Similarity=0.511 Sum_probs=76.1
Q ss_pred EEEEECCCCCChhhHH-hhhcCccc---cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEE
Q 029430 102 KISLLGDCQIGKTSFV-KYVGNEQE---RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~~~f~---~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illv 177 (193)
||+|+|+.|||||||+ +|+++.+. .+.++.+.++......++.....+++||++|++.+...+..++.++|++|+|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 8999999999999999 99999886 3344555666666777888888899999999999988888889999999999
Q ss_pred EECCChhhHHHHHhc
Q 029430 178 FDLTSRCTLNRFDHN 192 (193)
Q Consensus 178 yDit~~~Sf~~l~~W 192 (193)
||+++++||+++.+|
T Consensus 81 ~D~s~~~s~~~~~~~ 95 (119)
T PF08477_consen 81 YDLSDPESLEYLSQL 95 (119)
T ss_dssp EECCGHHHHHHHHHH
T ss_pred EcCCChHHHHHHHHH
Confidence 999999999998554
No 114
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.75 E-value=9.6e-18 Score=130.09 Aligned_cols=89 Identities=20% Similarity=0.420 Sum_probs=79.6
Q ss_pred eEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEEE
Q 029430 101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 178 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illvy 178 (193)
+||+++|++|||||||+ +++++.+. .+.+++. +.....+..++..+.+++||++|++++...+..+++.+|++++||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 59999999999999999 99999997 6667665 444567788899999999999999999999999999999999999
Q ss_pred ECCChhhHHHHH
Q 029430 179 DLTSRCTLNRFD 190 (193)
Q Consensus 179 Dit~~~Sf~~l~ 190 (193)
|+++++||+.+.
T Consensus 80 d~~~~~s~~~~~ 91 (171)
T cd00157 80 SVDSPSSFENVK 91 (171)
T ss_pred ECCCHHHHHHHH
Confidence 999999998864
No 115
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.75 E-value=3.4e-18 Score=134.13 Aligned_cols=87 Identities=17% Similarity=0.235 Sum_probs=76.9
Q ss_pred EEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEEEE
Q 029430 102 KISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD 179 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illvyD 179 (193)
+|+++|++|||||||+ ++.++ |. .+.||+|... +.+..++ +.+++||++|++++..++..|+++++++|+|||
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D 75 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTP--TKLRLDK--YEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD 75 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceE--EEEEECC--EEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence 5899999999999999 99876 66 7889998763 4555544 889999999999999999999999999999999
Q ss_pred CCChhhHHHHHhcC
Q 029430 180 LTSRCTLNRFDHNQ 193 (193)
Q Consensus 180 it~~~Sf~~l~~W~ 193 (193)
++++++|+++.+|+
T Consensus 76 ~s~~~s~~~~~~~l 89 (167)
T cd04161 76 SSDDDRVQEVKEIL 89 (167)
T ss_pred CCchhHHHHHHHHH
Confidence 99999999998874
No 116
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.74 E-value=1.9e-17 Score=132.18 Aligned_cols=93 Identities=22% Similarity=0.310 Sum_probs=82.3
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEE
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illv 177 (193)
+.||+++|++|+|||||+ ++..+.|. .+.+|++.++. ..+.+++..+.+.+||++|++.|..+.+.++++++++|+|
T Consensus 1 ~~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv 79 (187)
T cd04129 1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYV-TDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIG 79 (187)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEE-EEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEE
Confidence 369999999999999999 99989888 66777766654 5677889889999999999999998888899999999999
Q ss_pred EECCChhhHHHHH-hcC
Q 029430 178 FDLTSRCTLNRFD-HNQ 193 (193)
Q Consensus 178 yDit~~~Sf~~l~-~W~ 193 (193)
||+++++||+++. .|+
T Consensus 80 ~~i~~~~s~~~~~~~~~ 96 (187)
T cd04129 80 FAVDTPDSLENVRTKWI 96 (187)
T ss_pred EECCCHHHHHHHHHHHH
Confidence 9999999999996 473
No 117
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.74 E-value=9.7e-18 Score=128.13 Aligned_cols=90 Identities=17% Similarity=0.307 Sum_probs=82.3
Q ss_pred EEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEEEE
Q 029430 102 KISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD 179 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illvyD 179 (193)
||+++|++|||||||+ +++++.+. .+.++.+ +...+.+.+++..+.+++||++|++.+..++..++++++++++|||
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 7999999999999999 99998887 6777776 6667788888888999999999999999999999999999999999
Q ss_pred CCChhhHHHHHhc
Q 029430 180 LTSRCTLNRFDHN 192 (193)
Q Consensus 180 it~~~Sf~~l~~W 192 (193)
++++++|+++..|
T Consensus 80 ~~~~~s~~~~~~~ 92 (160)
T cd00876 80 ITDRESFEEIKGY 92 (160)
T ss_pred CCCHHHHHHHHHH
Confidence 9999999998877
No 118
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.73 E-value=1.2e-17 Score=131.76 Aligned_cols=90 Identities=21% Similarity=0.352 Sum_probs=79.8
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCccccccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEEE
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 178 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f~~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illvy 178 (193)
.+||+++|++|||||||+ ++..++|..+.+|+|.++. .+.++ .+.+.+||++|++.+...+..++++++++|+||
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~ 90 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVE--EIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVILVI 90 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceE--EEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEE
Confidence 589999999999999999 9999999877889987763 44455 488999999999999999999999999999999
Q ss_pred ECCChhhHHHHHhcC
Q 029430 179 DLTSRCTLNRFDHNQ 193 (193)
Q Consensus 179 Dit~~~Sf~~l~~W~ 193 (193)
|++++++|+.+.+|+
T Consensus 91 D~s~~~~~~~~~~~l 105 (174)
T cd04153 91 DSTDRERLPLTKEEL 105 (174)
T ss_pred ECCCHHHHHHHHHHH
Confidence 999999998887653
No 119
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.73 E-value=1e-17 Score=128.94 Aligned_cols=89 Identities=19% Similarity=0.409 Sum_probs=78.4
Q ss_pred EEEEECCCCCChhhHH-hhhcCccccccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEEEEC
Q 029430 102 KISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDL 180 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~~~f~~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illvyDi 180 (193)
||+++|++|||||||+ +|.++++..+.+|+|.++ ..+..+ ..+.+.+||++|++.+..++..++++++++|+|||.
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~--~~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~ 77 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNV--EMLQLE-KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDS 77 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcce--EEEEeC-CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence 6899999999999999 999999887778888765 344443 458999999999999999999999999999999999
Q ss_pred CChhhHHHHHhcC
Q 029430 181 TSRCTLNRFDHNQ 193 (193)
Q Consensus 181 t~~~Sf~~l~~W~ 193 (193)
+++.+|+++..|+
T Consensus 78 ~~~~~~~~~~~~~ 90 (160)
T cd04156 78 SDEARLDESQKEL 90 (160)
T ss_pred CcHHHHHHHHHHH
Confidence 9999999988764
No 120
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.73 E-value=1.2e-17 Score=128.52 Aligned_cols=88 Identities=18% Similarity=0.295 Sum_probs=75.5
Q ss_pred EEEEECCCCCChhhHH-hhhcCcc-c-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEEE
Q 029430 102 KISLLGDCQIGKTSFV-KYVGNEQ-E-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 178 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~~~f-~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illvy 178 (193)
+|+++|++|||||||+ ++.++.+ . .+.||+|..+. .+. ...+.+++||++|++++..++..++++++++|+||
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~--~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 76 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE--SFE--KGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE--EEE--ECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence 5899999999999999 9999864 4 67788886553 233 34588999999999999999999999999999999
Q ss_pred ECCChhhHHHHHhcC
Q 029430 179 DLTSRCTLNRFDHNQ 193 (193)
Q Consensus 179 Dit~~~Sf~~l~~W~ 193 (193)
|++++.+|+.+.+|+
T Consensus 77 D~~~~~~~~~~~~~~ 91 (162)
T cd04157 77 DSSDRLRLVVVKDEL 91 (162)
T ss_pred eCCcHHHHHHHHHHH
Confidence 999999998877663
No 121
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.72 E-value=2.1e-17 Score=130.05 Aligned_cols=91 Identities=18% Similarity=0.221 Sum_probs=83.0
Q ss_pred eEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEEE
Q 029430 101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 178 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illvy 178 (193)
.||+++|++|||||||+ ++.++.+. .+.++++..+ .+.+.+++..+.+++||++|+++|..++..++..++++++||
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 69999999999999999 99999988 6777776555 567788888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHhc
Q 029430 179 DLTSRCTLNRFDHN 192 (193)
Q Consensus 179 Dit~~~Sf~~l~~W 192 (193)
|+++.++|+.+..|
T Consensus 81 d~~~~~~~~~~~~~ 94 (180)
T cd04137 81 SVTSRKSFEVVKVI 94 (180)
T ss_pred ECCCHHHHHHHHHH
Confidence 99999999999877
No 122
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.72 E-value=1.3e-17 Score=128.92 Aligned_cols=87 Identities=24% Similarity=0.390 Sum_probs=76.0
Q ss_pred EEEEECCCCCChhhHH-hhhcCccccccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEEEEC
Q 029430 102 KISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDL 180 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~~~f~~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illvyDi 180 (193)
||+++|+++||||||+ ++..+++..+.+|+|.++. .+.. ..+.+++||++|++.+..+++.+++.++++|+|||+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~--~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~ 76 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTTIPTIGFNVE--TVTY--KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDS 76 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCcCCccCcCeE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEEC
Confidence 7999999999999999 9998888877788887764 3443 448899999999999999999999999999999999
Q ss_pred CChhhHHHHHhc
Q 029430 181 TSRCTLNRFDHN 192 (193)
Q Consensus 181 t~~~Sf~~l~~W 192 (193)
+++.+|....+|
T Consensus 77 ~~~~~~~~~~~~ 88 (158)
T cd04151 77 TDRDRLGTAKEE 88 (158)
T ss_pred CCHHHHHHHHHH
Confidence 999998776554
No 123
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=2.7e-17 Score=130.78 Aligned_cols=92 Identities=22% Similarity=0.378 Sum_probs=83.8
Q ss_pred CCceeeEEEEECCCCCChhhHH-hhhcCccccccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEE
Q 029430 96 SDLVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 174 (193)
Q Consensus 96 ~~~~~~KivllGd~gvGKTSLl-r~~~~~f~~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~i 174 (193)
....+++|+++|-.++||||++ ++..+++....||+|.++ .++++.+ +.+++||++||++++.+|+.||++.+++
T Consensus 13 ~~~~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiGfnV--E~v~ykn--~~f~vWDvGGq~k~R~lW~~Y~~~t~~l 88 (181)
T KOG0070|consen 13 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGFNV--ETVEYKN--ISFTVWDVGGQEKLRPLWKHYFQNTQGL 88 (181)
T ss_pred cCcceEEEEEEeccCCCceeeeEeeccCCcccCCCccccce--eEEEEcc--eEEEEEecCCCcccccchhhhccCCcEE
Confidence 3456899999999999999999 999999998899999887 4666664 9999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHh
Q 029430 175 LFMFDLTSRCTLNRFDH 191 (193)
Q Consensus 175 llvyDit~~~Sf~~l~~ 191 (193)
|+|.|.+|++.+.++++
T Consensus 89 IfVvDS~Dr~Ri~eak~ 105 (181)
T KOG0070|consen 89 IFVVDSSDRERIEEAKE 105 (181)
T ss_pred EEEEeCCcHHHHHHHHH
Confidence 99999999999998764
No 124
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.70 E-value=5.5e-17 Score=124.84 Aligned_cols=88 Identities=24% Similarity=0.402 Sum_probs=78.1
Q ss_pred EEEEECCCCCChhhHH-hhhcCccccccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEEEEC
Q 029430 102 KISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDL 180 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~~~f~~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illvyDi 180 (193)
||+++|.+|||||||+ +++++++..+.+|.+.+.. .+.++ .+.+.+||++|++.+...+..++++++++++|||+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~ 76 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVE--TVEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDS 76 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEEC
Confidence 7999999999999999 9999987788888887763 45555 48899999999999999999999999999999999
Q ss_pred CChhhHHHHHhcC
Q 029430 181 TSRCTLNRFDHNQ 193 (193)
Q Consensus 181 t~~~Sf~~l~~W~ 193 (193)
+++++|+.+..|+
T Consensus 77 ~~~~~~~~~~~~~ 89 (158)
T cd00878 77 SDRERIEEAKEEL 89 (158)
T ss_pred CCHHHHHHHHHHH
Confidence 9999999987763
No 125
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.69 E-value=7.9e-17 Score=128.47 Aligned_cols=91 Identities=16% Similarity=0.228 Sum_probs=78.6
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccccccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEE
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illv 177 (193)
..+||+++|.+|||||||+ ++.++.+..+.||.+... ..+.+++ +++.+||++|++.+..++..|+.+++++|+|
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~v 91 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTS--EELAIGN--IKFTTFDLGGHQQARRLWKDYFPEVNGIVYL 91 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEEE
Confidence 3689999999999999999 999988876677776654 3445554 7899999999999999999999999999999
Q ss_pred EECCChhhHHHHHhcC
Q 029430 178 FDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 178 yDit~~~Sf~~l~~W~ 193 (193)
+|++++++|++..+|+
T Consensus 92 vD~~~~~~~~~~~~~l 107 (184)
T smart00178 92 VDAYDKERFAESKREL 107 (184)
T ss_pred EECCcHHHHHHHHHHH
Confidence 9999999999887663
No 126
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.68 E-value=1.2e-16 Score=126.88 Aligned_cols=91 Identities=18% Similarity=0.235 Sum_probs=79.8
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccccccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEE
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illv 177 (193)
...||+++|++|||||||+ ++.++++..+.+|.+... ..+.+++ +.+.+||++|++.+..++..++++++++++|
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~--~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV 93 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTS--EELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIVFL 93 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCcce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 4789999999999999999 999988877778887654 4566665 7889999999999998999999999999999
Q ss_pred EECCChhhHHHHHhcC
Q 029430 178 FDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 178 yDit~~~Sf~~l~~W~ 193 (193)
||+++.++|++..+|+
T Consensus 94 ~D~~~~~s~~~~~~~~ 109 (190)
T cd00879 94 VDAADPERFQESKEEL 109 (190)
T ss_pred EECCcHHHHHHHHHHH
Confidence 9999999998877663
No 127
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.67 E-value=1.9e-16 Score=120.01 Aligned_cols=87 Identities=24% Similarity=0.481 Sum_probs=77.1
Q ss_pred EEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEEEE
Q 029430 102 KISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD 179 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illvyD 179 (193)
.|+++|++|||||||+ ++.+++|. ++.+|++.++. .+..++ +.+.+||++|++.+..++..++++++++++|+|
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 76 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR--KVTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVD 76 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE--EEEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEE
Confidence 3789999999999999 99999998 88889988874 344444 889999999999999999999999999999999
Q ss_pred CCChhhHHHHHhc
Q 029430 180 LTSRCTLNRFDHN 192 (193)
Q Consensus 180 it~~~Sf~~l~~W 192 (193)
+++.++|+.+.+|
T Consensus 77 ~~~~~~~~~~~~~ 89 (159)
T cd04159 77 AADRTALEAAKNE 89 (159)
T ss_pred CCCHHHHHHHHHH
Confidence 9999999877655
No 128
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.66 E-value=2.8e-16 Score=124.77 Aligned_cols=90 Identities=23% Similarity=0.395 Sum_probs=80.5
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcCccccccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEE
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 176 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~~f~~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~ill 176 (193)
...+||+++|.+|+|||||+ ++..+++..+.||.|.+. ..+.+++ +.+++||.+|++.++.+|+.|+.+++++|+
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~~--~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~iIf 87 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFNI--EEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGIIF 87 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEEE--EEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEEEE
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccccCccccccc--ceeeeCc--EEEEEEeccccccccccceeeccccceeEE
Confidence 45899999999999999999 998887778999999876 4566666 788999999999999999999999999999
Q ss_pred EEECCChhhHHHHHh
Q 029430 177 MFDLTSRCTLNRFDH 191 (193)
Q Consensus 177 vyDit~~~Sf~~l~~ 191 (193)
|.|.+|.+.|++..+
T Consensus 88 VvDssd~~~l~e~~~ 102 (175)
T PF00025_consen 88 VVDSSDPERLQEAKE 102 (175)
T ss_dssp EEETTGGGGHHHHHH
T ss_pred EEecccceeeccccc
Confidence 999999988887654
No 129
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=2.4e-16 Score=126.02 Aligned_cols=95 Identities=25% Similarity=0.366 Sum_probs=88.1
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEE
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~il 175 (193)
...+|++++||+|.|||+++ |.+.++|+ .|.+|+|.+.+.-....+...+++..|||+|||.+..+...||-.+.+.|
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi 87 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI 87 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence 45899999999999999999 99999999 89999999997666555656799999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHhc
Q 029430 176 FMFDLTSRCTLNRFDHN 192 (193)
Q Consensus 176 lvyDit~~~Sf~~l~~W 192 (193)
++||++++-++.++.+|
T Consensus 88 imFdVtsr~t~~n~~rw 104 (216)
T KOG0096|consen 88 IMFDVTSRFTYKNVPRW 104 (216)
T ss_pred EEeeeeehhhhhcchHH
Confidence 99999999999999999
No 130
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.66 E-value=3.3e-16 Score=121.32 Aligned_cols=88 Identities=23% Similarity=0.320 Sum_probs=74.3
Q ss_pred EEEEECCCCCChhhHH-hhhcCc------cc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcE
Q 029430 102 KISLLGDCQIGKTSFV-KYVGNE------QE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVA 173 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~~~------f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~ 173 (193)
||+++|++|||||||+ ++.+.. +. .+.+|++.++. .+.+++ ..+.+||++|++.+..++..+++++++
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG--TIEVGN--ARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE--EEEECC--EEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 6899999999999999 987532 22 55778887774 455554 789999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHhcC
Q 029430 174 ILFMFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 174 illvyDit~~~Sf~~l~~W~ 193 (193)
+++|||.+++++++.+..|+
T Consensus 77 ~v~vvd~~~~~~~~~~~~~~ 96 (167)
T cd04160 77 IIYVIDSTDRERFEESKSAL 96 (167)
T ss_pred EEEEEECchHHHHHHHHHHH
Confidence 99999999999999887763
No 131
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.62 E-value=1.9e-15 Score=118.46 Aligned_cols=88 Identities=25% Similarity=0.441 Sum_probs=79.9
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccccccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEE
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illv 177 (193)
.+++|+++|..|+|||+++ +|.+.......||.|.++ +++.+++ ++++|||++||...+..|++||..+||+|+|
T Consensus 15 rE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~I--ktl~~~~--~~L~iwDvGGq~~lr~~W~nYfestdglIwv 90 (185)
T KOG0073|consen 15 REVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQI--KTLEYKG--YTLNIWDVGGQKTLRSYWKNYFESTDGLIWV 90 (185)
T ss_pred heeEEEEEecCCCCchhHHHHhcCCCccccCCccceee--EEEEecc--eEEEEEEcCCcchhHHHHHHhhhccCeEEEE
Confidence 4899999999999999999 998887668889999776 6777776 8999999999999999999999999999999
Q ss_pred EECCChhhHHHHH
Q 029430 178 FDLTSRCTLNRFD 190 (193)
Q Consensus 178 yDit~~~Sf~~l~ 190 (193)
+|.+|+..|++..
T Consensus 91 vDssD~~r~~e~~ 103 (185)
T KOG0073|consen 91 VDSSDRMRMQECK 103 (185)
T ss_pred EECchHHHHHHHH
Confidence 9999998888753
No 132
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.61 E-value=2.5e-15 Score=117.16 Aligned_cols=89 Identities=19% Similarity=0.376 Sum_probs=77.7
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCccccccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEEE
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 178 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f~~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illvy 178 (193)
.+||+++|++|||||||+ ++.+..+..+.+|.|.++ ..+..++ ..+.+||++|++.+...+..++++++++++||
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~--~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 89 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASEDISHITPTQGFNI--KTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCLIYVI 89 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEEEEE
Confidence 789999999999999999 999887777778888665 4556665 67899999999999888999999999999999
Q ss_pred ECCChhhHHHHHhc
Q 029430 179 DLTSRCTLNRFDHN 192 (193)
Q Consensus 179 Dit~~~Sf~~l~~W 192 (193)
|+++..+|+....|
T Consensus 90 D~~~~~~~~~~~~~ 103 (173)
T cd04155 90 DSADKKRLEEAGAE 103 (173)
T ss_pred eCCCHHHHHHHHHH
Confidence 99999999877655
No 133
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.60 E-value=2e-15 Score=118.31 Aligned_cols=91 Identities=14% Similarity=0.240 Sum_probs=72.6
Q ss_pred EEEEECCCCCChhhHH-hhhcCc-------cc-cccc------cceeeeEEEEEEE-----CCeEEEEEEEeCCCCCCCC
Q 029430 102 KISLLGDCQIGKTSFV-KYVGNE-------QE-RSLQ------MAGLNLINKTLMV-----QGARIAFSIWDVGGDSRSF 161 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~~~-------f~-~~~~------t~g~~~~~~~i~v-----~~~~v~l~iwD~~G~e~~~ 161 (193)
+|+++|+.+||||||+ +|++.. +. .+.+ +.|.++..+.+.+ ++..+.+++|||+|+++|.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 6899999999999999 998742 22 2333 3355665555444 6778999999999999999
Q ss_pred cchhhhccCCcEEEEEEECCChhhHHHHHhc
Q 029430 162 DHVPIACKDAVAILFMFDLTSRCTLNRFDHN 192 (193)
Q Consensus 162 ~~~~~~~~~a~~illvyDit~~~Sf~~l~~W 192 (193)
.++..+++++|++|+|||+++..+++.+..|
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~ 112 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANF 112 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHH
Confidence 9999999999999999999998777666554
No 134
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=3.1e-15 Score=114.85 Aligned_cols=89 Identities=21% Similarity=0.404 Sum_probs=81.2
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccccccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEE
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illv 177 (193)
.+++|+++|-.++||||++ ++.-++.....||+|+++ +++++.+ +++++||++||++.+.+|..||.+..++|||
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvGFnv--etVtykN--~kfNvwdvGGqd~iRplWrhYy~gtqglIFV 91 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNV--ETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV 91 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCCCcccccccceeE--EEEEeee--eEEeeeeccCchhhhHHHHhhccCCceEEEE
Confidence 4899999999999999999 999998888999999876 5666655 9999999999999999999999999999999
Q ss_pred EECCChhhHHHHHh
Q 029430 178 FDLTSRCTLNRFDH 191 (193)
Q Consensus 178 yDit~~~Sf~~l~~ 191 (193)
.|.++++..+++++
T Consensus 92 ~Dsa~~dr~eeAr~ 105 (180)
T KOG0071|consen 92 VDSADRDRIEEARN 105 (180)
T ss_pred EeccchhhHHHHHH
Confidence 99999988888753
No 135
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.59 E-value=9.1e-15 Score=109.66 Aligned_cols=91 Identities=18% Similarity=0.291 Sum_probs=81.9
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEE
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illv 177 (193)
.+||+++|.+|+|||||+ ++..+.+. ++.++++.++....+..++..+.+.+||++|++.+..++..+++.+++++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 379999999999999999 99999977 7778888888877788888889999999999999999999999999999999
Q ss_pred EECCCh-hhHHHHH
Q 029430 178 FDLTSR-CTLNRFD 190 (193)
Q Consensus 178 yDit~~-~Sf~~l~ 190 (193)
+|++.. .++++..
T Consensus 81 ~d~~~~v~~~~~~~ 94 (161)
T TIGR00231 81 FDIVILVLDVEEIL 94 (161)
T ss_pred EEEeeeehhhhhHh
Confidence 999988 7776654
No 136
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.58 E-value=1.8e-17 Score=132.33 Aligned_cols=97 Identities=23% Similarity=0.389 Sum_probs=90.5
Q ss_pred CceeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeE-EEEEEEeCCCCCCCCcchhhhccCCcE
Q 029430 97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGAR-IAFSIWDVGGDSRSFDHVPIACKDAVA 173 (193)
Q Consensus 97 ~~~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~-v~l~iwD~~G~e~~~~~~~~~~~~a~~ 173 (193)
....+|+.++|+-||||||++ +|+...|. .|..|+|.+|..+.+..|++. +++++||++|||++..+...||+.+++
T Consensus 22 r~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~ 101 (229)
T KOG4423|consen 22 REHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHG 101 (229)
T ss_pred hhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcc
Confidence 345799999999999999999 99999999 888899999998888887755 799999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHhcC
Q 029430 174 ILFMFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 174 illvyDit~~~Sf~~l~~W~ 193 (193)
..+|||+|+..+|+.+..|.
T Consensus 102 ~~iVfdvt~s~tfe~~skwk 121 (229)
T KOG4423|consen 102 AFIVFDVTRSLTFEPVSKWK 121 (229)
T ss_pred eEEEEEccccccccHHHHHH
Confidence 99999999999999999994
No 137
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.55 E-value=8.9e-15 Score=118.96 Aligned_cols=92 Identities=22% Similarity=0.273 Sum_probs=74.7
Q ss_pred EEEEECCCCCChhhHH-hhhcCccccccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCC-cEEEEEEE
Q 029430 102 KISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDA-VAILFMFD 179 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~~~f~~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a-~~illvyD 179 (193)
+|+++|++|+|||||+ ++.++++....+++..+.....+..++....+.|||++|++++...+..+++.+ +++|+|+|
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD 81 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD 81 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence 5899999999999999 999998886556554444332222224567899999999999999988999999 99999999
Q ss_pred CCCh-hhHHHHHhcC
Q 029430 180 LTSR-CTLNRFDHNQ 193 (193)
Q Consensus 180 it~~-~Sf~~l~~W~ 193 (193)
.++. +++..+.+|+
T Consensus 82 ~~~~~~~~~~~~~~l 96 (203)
T cd04105 82 SATFQKNLKDVAEFL 96 (203)
T ss_pred CccchhHHHHHHHHH
Confidence 9998 7888877663
No 138
>PTZ00099 rab6; Provisional
Probab=99.55 E-value=1.1e-14 Score=116.08 Aligned_cols=73 Identities=19% Similarity=0.413 Sum_probs=68.7
Q ss_pred cCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEEEECCChhhHHHHHhcC
Q 029430 121 GNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 121 ~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illvyDit~~~Sf~~l~~W~ 193 (193)
.+.|. +|.||+|.++..+.+.+++..+.+.||||+|+++|..+++.|++++|++|+|||+++++||+++.+|+
T Consensus 2 ~~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~ 75 (176)
T PTZ00099 2 YDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWI 75 (176)
T ss_pred CCCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHH
Confidence 35677 78899999999999999999999999999999999999999999999999999999999999999985
No 139
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.51 E-value=4.2e-14 Score=108.52 Aligned_cols=87 Identities=15% Similarity=0.153 Sum_probs=64.8
Q ss_pred EEEEECCCCCChhhHH-hhhcC---ccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEE
Q 029430 102 KISLLGDCQIGKTSFV-KYVGN---EQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 176 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~~---~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~ill 176 (193)
-|+++|++|||||||+ ++.+. .+. ++.+++..+.....+.+++ ...+++|||+|+++|......+++++|++|+
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~ 80 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL 80 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence 5899999999999999 99863 343 3333333333334455542 3689999999999987766678899999999
Q ss_pred EEECCC---hhhHHHH
Q 029430 177 MFDLTS---RCTLNRF 189 (193)
Q Consensus 177 vyDit~---~~Sf~~l 189 (193)
|||+++ .++++.+
T Consensus 81 V~d~~~~~~~~~~~~~ 96 (164)
T cd04171 81 VVAADEGIMPQTREHL 96 (164)
T ss_pred EEECCCCccHhHHHHH
Confidence 999988 6666654
No 140
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.51 E-value=1.7e-14 Score=115.71 Aligned_cols=83 Identities=17% Similarity=0.221 Sum_probs=70.4
Q ss_pred eEEEEECCCCCChhhHH-hhhc--Cccc-cc------------cccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcch
Q 029430 101 LKISLLGDCQIGKTSFV-KYVG--NEQE-RS------------LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHV 164 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~--~~f~-~~------------~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~ 164 (193)
-+|+++|+.+||||||+ +|+. +.|. .+ ..+.|.++..+...++...+.+++|||+|+++|..+.
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 38999999999999999 9997 6665 22 2356777766766777777999999999999999999
Q ss_pred hhhccCCcEEEEEEECCCh
Q 029430 165 PIACKDAVAILFMFDLTSR 183 (193)
Q Consensus 165 ~~~~~~a~~illvyDit~~ 183 (193)
..+++++|++++|||+++.
T Consensus 83 ~~~~~~~d~~ilV~d~~~~ 101 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEG 101 (194)
T ss_pred HHHHHhcCEEEEEEECCCC
Confidence 9999999999999999883
No 141
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.49 E-value=2.1e-13 Score=104.93 Aligned_cols=91 Identities=20% Similarity=0.375 Sum_probs=80.0
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcCccccccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEE
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 176 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~~f~~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~ill 176 (193)
..++||.++|-+++|||+|+ ++.........||-|++. +.+..++ .+.+++||++||...+..|..||.+.|++|+
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~--k~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenvd~lIy 91 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNT--KKVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENVDGLIY 91 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCChhhccccCCcce--EEEeecC-cEEEEEEecCCccccchhhhhhhhccceEEE
Confidence 45899999999999999999 877666557788998765 6676665 6899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHh
Q 029430 177 MFDLTSRCTLNRFDH 191 (193)
Q Consensus 177 vyDit~~~Sf~~l~~ 191 (193)
|.|.+|+.-|+++.+
T Consensus 92 VIDS~D~krfeE~~~ 106 (185)
T KOG0074|consen 92 VIDSTDEKRFEEISE 106 (185)
T ss_pred EEeCCchHhHHHHHH
Confidence 999999999998753
No 142
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.48 E-value=1.3e-14 Score=110.01 Aligned_cols=73 Identities=18% Similarity=0.167 Sum_probs=57.0
Q ss_pred EEEEECCCCCChhhHH-hhhcCccccccccceeeeEEEEEEECCeEEEEEEEeCCCCC-----CCCcchhhhccCCcEEE
Q 029430 102 KISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS-----RSFDHVPIACKDAVAIL 175 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~~~f~~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e-----~~~~~~~~~~~~a~~il 175 (193)
||+++|++|||||||+ +|+++.+ .+.+|++.++. + .+|||+|+. .|..+.+ .++++|++|
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~-~~~~t~~~~~~-------~-----~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vi 67 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI-LYKKTQAVEYN-------D-----GAIDTPGEYVENRRLYSALIV-TAADADVIA 67 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc-ccccceeEEEc-------C-----eeecCchhhhhhHHHHHHHHH-HhhcCCEEE
Confidence 8999999999999999 9998876 34456555442 1 589999983 2443433 478999999
Q ss_pred EEEECCChhhHHH
Q 029430 176 FMFDLTSRCTLNR 188 (193)
Q Consensus 176 lvyDit~~~Sf~~ 188 (193)
+|||++++.+|..
T Consensus 68 lv~d~~~~~s~~~ 80 (142)
T TIGR02528 68 LVQSATDPESRFP 80 (142)
T ss_pred EEecCCCCCcCCC
Confidence 9999999999865
No 143
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.44 E-value=2.7e-13 Score=104.71 Aligned_cols=88 Identities=9% Similarity=0.052 Sum_probs=67.5
Q ss_pred EEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEEC-CeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEEE
Q 029430 102 KISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQ-GARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 178 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~-~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illvy 178 (193)
.|+++|++|+|||||+ ++..+++. .+.++...++....+..+ +....+.+|||+|++.|..++..++..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 4899999999999999 99999887 333333333333344443 24578999999999999999988999999999999
Q ss_pred ECCC---hhhHHHH
Q 029430 179 DLTS---RCTLNRF 189 (193)
Q Consensus 179 Dit~---~~Sf~~l 189 (193)
|.++ .++++.+
T Consensus 82 d~~~~~~~~~~~~~ 95 (168)
T cd01887 82 AADDGVMPQTIEAI 95 (168)
T ss_pred ECCCCccHHHHHHH
Confidence 9998 4555544
No 144
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.42 E-value=7.7e-13 Score=103.03 Aligned_cols=90 Identities=14% Similarity=0.204 Sum_probs=75.9
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCccc---cccccceeeeEEEEEEEC-CeEEEEEEEeCCCCCCC-CcchhhhccCCcE
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQE---RSLQMAGLNLINKTLMVQ-GARIAFSIWDVGGDSRS-FDHVPIACKDAVA 173 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f~---~~~~t~g~~~~~~~i~v~-~~~v~l~iwD~~G~e~~-~~~~~~~~~~a~~ 173 (193)
..|++++|.-+||||+++ +++.++.. ++.||++ |++...++.+ |.+=.+.++||+|-..+ ..+-..|+.-+|+
T Consensus 9 ~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiE-DiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa 87 (198)
T KOG3883|consen 9 VCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIE-DIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA 87 (198)
T ss_pred ceEEEEECCccccHHHHHHHHHhccCCCCCccccchh-hheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence 579999999999999999 99888766 6777885 5666666554 56678999999998888 5666789999999
Q ss_pred EEEEEECCChhhHHHHH
Q 029430 174 ILFMFDLTSRCTLNRFD 190 (193)
Q Consensus 174 illvyDit~~~Sf~~l~ 190 (193)
|++|||..|++||+.+.
T Consensus 88 fVLVYs~~d~eSf~rv~ 104 (198)
T KOG3883|consen 88 FVLVYSPMDPESFQRVE 104 (198)
T ss_pred EEEEecCCCHHHHHHHH
Confidence 99999999999999864
No 145
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.42 E-value=7.1e-13 Score=97.81 Aligned_cols=87 Identities=25% Similarity=0.502 Sum_probs=76.7
Q ss_pred EECCCCCChhhHH-hhhcCcc-c-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEEEECC
Q 029430 105 LLGDCQIGKTSFV-KYVGNEQ-E-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLT 181 (193)
Q Consensus 105 llGd~gvGKTSLl-r~~~~~f-~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illvyDit 181 (193)
++|..|+|||||+ ++.+... . ...+|. .++........+....+.+||++|++.+......+++.++++++|||++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 5899999999999 9998887 4 454555 8888888888888899999999999998888888999999999999999
Q ss_pred ChhhHHHHHhc
Q 029430 182 SRCTLNRFDHN 192 (193)
Q Consensus 182 ~~~Sf~~l~~W 192 (193)
+..+++.+..|
T Consensus 80 ~~~~~~~~~~~ 90 (157)
T cd00882 80 DRESFENVKEW 90 (157)
T ss_pred CHHHHHHHHHH
Confidence 99999988776
No 146
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.40 E-value=1.1e-12 Score=118.59 Aligned_cols=89 Identities=19% Similarity=0.369 Sum_probs=72.7
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCcc--ccccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcch--------hhh
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQ--ERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHV--------PIA 167 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f--~~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~--------~~~ 167 (193)
..+||+++|++|||||||+ ++++..+ ....+.+..++....+.+++ ..+.+|||+|+.++.... ..+
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~~ 279 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFKA 279 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence 3589999999999999999 9998764 34556666788778888888 456899999997765432 357
Q ss_pred ccCCcEEEEEEECCChhhHHHH
Q 029430 168 CKDAVAILFMFDLTSRCTLNRF 189 (193)
Q Consensus 168 ~~~a~~illvyDit~~~Sf~~l 189 (193)
++++|++|+|||++++.+++..
T Consensus 280 ~~~aD~il~V~D~s~~~s~~~~ 301 (442)
T TIGR00450 280 IKQADLVIYVLDASQPLTKDDF 301 (442)
T ss_pred HhhCCEEEEEEECCCCCChhHH
Confidence 8999999999999999888764
No 147
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.40 E-value=2.4e-13 Score=105.15 Aligned_cols=87 Identities=23% Similarity=0.400 Sum_probs=77.1
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEE
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 176 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~ill 176 (193)
.++.++++|-..+|||||+ ....++|. ...||.|.+.+ ++....+.+.+||.+||.+|+.+|+.||++.+++++
T Consensus 19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmr----k~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY 94 (186)
T KOG0075|consen 19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVY 94 (186)
T ss_pred heeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeE----EeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEE
Confidence 4788999999999999999 88888988 78899998864 345566999999999999999999999999999999
Q ss_pred EEECCChhhHHHH
Q 029430 177 MFDLTSRCTLNRF 189 (193)
Q Consensus 177 vyDit~~~Sf~~l 189 (193)
|.|.++++.++..
T Consensus 95 ~VDaad~~k~~~s 107 (186)
T KOG0075|consen 95 VVDAADPDKLEAS 107 (186)
T ss_pred EeecCCcccchhh
Confidence 9999998776543
No 148
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.40 E-value=8.2e-13 Score=102.33 Aligned_cols=90 Identities=13% Similarity=0.152 Sum_probs=61.3
Q ss_pred EEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCC----CCCcchhhhcc---CCc
Q 029430 102 KISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS----RSFDHVPIACK---DAV 172 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e----~~~~~~~~~~~---~a~ 172 (193)
.|+++|.+|||||||+ ++.+.+.. ...+....+.....+.+++ ...+.+|||+|+. .+..+...+++ .+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCC-CCeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 5899999999999999 98876543 2112111121112233343 2579999999974 23344445544 599
Q ss_pred EEEEEEECCCh-hhHHHHHhc
Q 029430 173 AILFMFDLTSR-CTLNRFDHN 192 (193)
Q Consensus 173 ~illvyDit~~-~Sf~~l~~W 192 (193)
++++|||++++ ++|+++..|
T Consensus 81 ~vi~v~D~~~~~~~~~~~~~~ 101 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYKTI 101 (170)
T ss_pred EEEEEEecCCCCCHHHHHHHH
Confidence 99999999999 788888776
No 149
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.37 E-value=2.4e-12 Score=99.73 Aligned_cols=87 Identities=18% Similarity=0.240 Sum_probs=57.2
Q ss_pred EEEEECCCCCChhhHH-hhhcCccc-cccc--cceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcc---------hhhhc
Q 029430 102 KISLLGDCQIGKTSFV-KYVGNEQE-RSLQ--MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH---------VPIAC 168 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~~~f~-~~~~--t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~---------~~~~~ 168 (193)
+|+++|++|||||||+ ++.++++. ...+ |.+... ..+.. ..+.+++|||+|++..... .....
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~--~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 77 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFV--GHFDY--KYLRWQVIDTPGLLDRPLEERNTIEMQAITALA 77 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeE--EEEcc--CceEEEEEECCCcCCccccCCchHHHHHHHHHH
Confidence 7999999999999999 99998875 3222 333222 22223 3478999999998532110 00111
Q ss_pred cCCcEEEEEEECCChhhH--HHHHhc
Q 029430 169 KDAVAILFMFDLTSRCTL--NRFDHN 192 (193)
Q Consensus 169 ~~a~~illvyDit~~~Sf--~~l~~W 192 (193)
..+|++|+|||.+++++| +...+|
T Consensus 78 ~~~d~~l~v~d~~~~~~~~~~~~~~~ 103 (168)
T cd01897 78 HLRAAVLFLFDPSETCGYSLEEQLSL 103 (168)
T ss_pred hccCcEEEEEeCCcccccchHHHHHH
Confidence 236899999999998754 554444
No 150
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.37 E-value=2.2e-12 Score=98.48 Aligned_cols=82 Identities=17% Similarity=0.118 Sum_probs=65.5
Q ss_pred EECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcc------hhhhcc--CCcEE
Q 029430 105 LLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH------VPIACK--DAVAI 174 (193)
Q Consensus 105 llGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~------~~~~~~--~a~~i 174 (193)
++|++|||||||+ ++.+..+. .+.+++..+.....+.+++ ..+.+|||+|++.+... ...++. +++++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 5899999999999 99988755 5566666677667788876 57899999999887653 566665 99999
Q ss_pred EEEEECCChhhHHH
Q 029430 175 LFMFDLTSRCTLNR 188 (193)
Q Consensus 175 llvyDit~~~Sf~~ 188 (193)
|+|+|.++.++...
T Consensus 79 i~v~d~~~~~~~~~ 92 (158)
T cd01879 79 VNVVDATNLERNLY 92 (158)
T ss_pred EEEeeCCcchhHHH
Confidence 99999998765433
No 151
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.35 E-value=7.2e-12 Score=95.04 Aligned_cols=90 Identities=19% Similarity=0.364 Sum_probs=68.6
Q ss_pred eEEEEECCCCCChhhHH-hhhcCccc--cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcc--------hhhhcc
Q 029430 101 LKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH--------VPIACK 169 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~~~f~--~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~--------~~~~~~ 169 (193)
+||+++|++|+|||||+ ++.+..+. ...+++..++....+..++ ..+.+|||+|...+... ...++.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 58999999999999999 99887754 3444555555555565554 67899999998776532 224677
Q ss_pred CCcEEEEEEECCChhhHHHHHhc
Q 029430 170 DAVAILFMFDLTSRCTLNRFDHN 192 (193)
Q Consensus 170 ~a~~illvyDit~~~Sf~~l~~W 192 (193)
.++++++|+|++++.+..+.+.|
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~~~ 102 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLEIL 102 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHHHH
Confidence 89999999999998888776544
No 152
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.34 E-value=2.1e-12 Score=103.94 Aligned_cols=90 Identities=14% Similarity=0.166 Sum_probs=63.8
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCccc-c--ccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCc--chh------hh
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQE-R--SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD--HVP------IA 167 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f~-~--~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~--~~~------~~ 167 (193)
.++|+++|++|||||||+ +++++++. . +.+|. +.....+.+++. ..+.+|||+|...... ... ..
T Consensus 41 ~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~--~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 117 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATL--DPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTLEE 117 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHhcchhccCCccceec--cceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHHHH
Confidence 479999999999999999 99988754 2 22344 333345555543 3788999999843211 111 13
Q ss_pred ccCCcEEEEEEECCChhhHHHHHhc
Q 029430 168 CKDAVAILFMFDLTSRCTLNRFDHN 192 (193)
Q Consensus 168 ~~~a~~illvyDit~~~Sf~~l~~W 192 (193)
+.++|++++|+|.+++.+++++..|
T Consensus 118 ~~~~d~ii~v~D~~~~~~~~~~~~~ 142 (204)
T cd01878 118 VAEADLLLHVVDASDPDYEEQIETV 142 (204)
T ss_pred HhcCCeEEEEEECCCCChhhHHHHH
Confidence 6789999999999999988876554
No 153
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.30 E-value=1e-11 Score=112.40 Aligned_cols=91 Identities=22% Similarity=0.344 Sum_probs=72.5
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCcc--ccccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcch--------hhhc
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQ--ERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHV--------PIAC 168 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f--~~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~--------~~~~ 168 (193)
.+||+++|.+|||||||+ ++++++. ....+.+..++....+.+++ ..+.+|||+|.+++.... ..++
T Consensus 215 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~ 292 (449)
T PRK05291 215 GLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREAI 292 (449)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence 489999999999999999 9998775 34445444677677788877 567899999998765432 2368
Q ss_pred cCCcEEEEEEECCChhhHHHHHhc
Q 029430 169 KDAVAILFMFDLTSRCTLNRFDHN 192 (193)
Q Consensus 169 ~~a~~illvyDit~~~Sf~~l~~W 192 (193)
+++|++|+|||.+++.++++...|
T Consensus 293 ~~aD~il~VvD~s~~~s~~~~~~l 316 (449)
T PRK05291 293 EEADLVLLVLDASEPLTEEDDEIL 316 (449)
T ss_pred HhCCEEEEEecCCCCCChhHHHHH
Confidence 899999999999999888876655
No 154
>PRK04213 GTP-binding protein; Provisional
Probab=99.30 E-value=1.2e-12 Score=105.00 Aligned_cols=78 Identities=18% Similarity=0.233 Sum_probs=55.5
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCC-----------CCCCCcchh
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGG-----------DSRSFDHVP 165 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G-----------~e~~~~~~~ 165 (193)
..+||+++|.+|||||||+ ++.++.+. .+.+++. +....+.++ .+.+|||+| ++.+..++.
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t--~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVT--RKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEIV 81 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCcee--eCceEEeec----ceEEEeCCccccccccCHHHHHHHHHHHH
Confidence 3689999999999999999 99998876 4555443 333444443 589999999 566776766
Q ss_pred hhcc-CC---cEEEEEEECCC
Q 029430 166 IACK-DA---VAILFMFDLTS 182 (193)
Q Consensus 166 ~~~~-~a---~~illvyDit~ 182 (193)
.|+. .+ +++++|.|.++
T Consensus 82 ~~~~~~~~~~~~vi~v~d~~~ 102 (201)
T PRK04213 82 RYIEDNADRILAAVLVVDGKS 102 (201)
T ss_pred HHHHhhhhhheEEEEEEeCcc
Confidence 6765 44 45666666543
No 155
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.29 E-value=6.2e-12 Score=117.37 Aligned_cols=92 Identities=12% Similarity=0.223 Sum_probs=73.5
Q ss_pred eEEEEECCCCCChhhHH-hhhcCc-------cc-ccc------ccceeeeEEEEEEE-----CCeEEEEEEEeCCCCCCC
Q 029430 101 LKISLLGDCQIGKTSFV-KYVGNE-------QE-RSL------QMAGLNLINKTLMV-----QGARIAFSIWDVGGDSRS 160 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~~~-------f~-~~~------~t~g~~~~~~~i~v-----~~~~v~l~iwD~~G~e~~ 160 (193)
-+++++|..++|||||+ +++... +. .+. ...|..+..+.+.+ ++..+.+++|||+|+++|
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF 83 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 83 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence 47999999999999999 998652 32 222 23477776665544 577799999999999999
Q ss_pred CcchhhhccCCcEEEEEEECCChhhHHHHHhc
Q 029430 161 FDHVPIACKDAVAILFMFDLTSRCTLNRFDHN 192 (193)
Q Consensus 161 ~~~~~~~~~~a~~illvyDit~~~Sf~~l~~W 192 (193)
......+++.+|++|+|||.++..+++....|
T Consensus 84 ~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~ 115 (595)
T TIGR01393 84 SYEVSRSLAACEGALLLVDAAQGIEAQTLANV 115 (595)
T ss_pred HHHHHHHHHhCCEEEEEecCCCCCCHhHHHHH
Confidence 99999999999999999999997666665554
No 156
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.28 E-value=8e-12 Score=113.62 Aligned_cols=84 Identities=21% Similarity=0.366 Sum_probs=64.9
Q ss_pred eEEEEECCCCCChhhHH-hhhcCccc--cccccceeeeEEEEEEECCeEEEEEEEeCCCCCC--------CCcchhhhcc
Q 029430 101 LKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR--------SFDHVPIACK 169 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~~~f~--~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~--------~~~~~~~~~~ 169 (193)
.||+++|.+|||||||+ +++++.+. ...+.+..+.....+.+++. .+.+|||+|.+. +......+++
T Consensus 39 ~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 116 (472)
T PRK03003 39 PVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGR--RFTVVDTGGWEPDAKGLQASVAEQAEVAMR 116 (472)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCc--EEEEEeCCCcCCcchhHHHHHHHHHHHHHH
Confidence 68999999999999999 99988764 34444445555566667774 578999999874 2233456789
Q ss_pred CCcEEEEEEECCChhhH
Q 029430 170 DAVAILFMFDLTSRCTL 186 (193)
Q Consensus 170 ~a~~illvyDit~~~Sf 186 (193)
.+|++|+|||+++..++
T Consensus 117 ~aD~il~VvD~~~~~s~ 133 (472)
T PRK03003 117 TADAVLFVVDATVGATA 133 (472)
T ss_pred hCCEEEEEEECCCCCCH
Confidence 99999999999997654
No 157
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.27 E-value=8.9e-12 Score=109.56 Aligned_cols=92 Identities=16% Similarity=0.195 Sum_probs=66.9
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCC--CCcchh------hhcc
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR--SFDHVP------IACK 169 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~--~~~~~~------~~~~ 169 (193)
.+||+++|.+|||||||+ ++++.++. ...+....+...+.+.+++. ..+.+|||+|..+ ...+.. .++.
T Consensus 189 ~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~tle~~~ 267 (351)
T TIGR03156 189 VPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRATLEEVR 267 (351)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHHHHHHH
Confidence 479999999999999999 99988764 33332224556677777432 4788999999722 111112 2478
Q ss_pred CCcEEEEEEECCChhhHHHHHhc
Q 029430 170 DAVAILFMFDLTSRCTLNRFDHN 192 (193)
Q Consensus 170 ~a~~illvyDit~~~Sf~~l~~W 192 (193)
++|++|+|||++++.+++.+..|
T Consensus 268 ~ADlil~VvD~s~~~~~~~~~~~ 290 (351)
T TIGR03156 268 EADLLLHVVDASDPDREEQIEAV 290 (351)
T ss_pred hCCEEEEEEECCCCchHHHHHHH
Confidence 99999999999999988876544
No 158
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.27 E-value=1e-11 Score=112.90 Aligned_cols=89 Identities=17% Similarity=0.283 Sum_probs=70.4
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCccc--cccccceeeeEEEEEEECCeEEEEEEEeCCCCCC----------CCcch-h
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR----------SFDHV-P 165 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f~--~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~----------~~~~~-~ 165 (193)
..||+++|.++||||||+ +++++++. ...+++..+.....+.+++.. +.+|||+|..+ |..+. .
T Consensus 211 ~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~--~~l~DTaG~~~~~~~~~~~e~~~~~~~~ 288 (472)
T PRK03003 211 PRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKT--WRFVDTAGLRRRVKQASGHEYYASLRTH 288 (472)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEE--EEEEECCCccccccccchHHHHHHHHHH
Confidence 589999999999999999 99998764 555666677777788888865 46999999632 22222 2
Q ss_pred hhccCCcEEEEEEECCChhhHHHHH
Q 029430 166 IACKDAVAILFMFDLTSRCTLNRFD 190 (193)
Q Consensus 166 ~~~~~a~~illvyDit~~~Sf~~l~ 190 (193)
.+++++|++|+|||.++..++++++
T Consensus 289 ~~i~~ad~vilV~Da~~~~s~~~~~ 313 (472)
T PRK03003 289 AAIEAAEVAVVLIDASEPISEQDQR 313 (472)
T ss_pred HHHhcCCEEEEEEeCCCCCCHHHHH
Confidence 3578999999999999998887764
No 159
>PRK15494 era GTPase Era; Provisional
Probab=99.25 E-value=4.2e-11 Score=104.77 Aligned_cols=89 Identities=11% Similarity=0.225 Sum_probs=62.1
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcCcccccccc--ceeeeEEEEEEECCeEEEEEEEeCCCCCC-CCcchh-------h
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQM--AGLNLINKTLMVQGARIAFSIWDVGGDSR-SFDHVP-------I 166 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~~f~~~~~t--~g~~~~~~~i~v~~~~v~l~iwD~~G~e~-~~~~~~-------~ 166 (193)
....||+++|++|||||||+ +|+++.+..+.+. ...+.....+..++ ..+.+|||+|+.+ +..+.. .
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~~ 127 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAWS 127 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHHH
Confidence 45689999999999999999 9999887522221 11234445566666 4679999999854 443332 2
Q ss_pred hccCCcEEEEEEECCChhhHHHHH
Q 029430 167 ACKDAVAILFMFDLTSRCTLNRFD 190 (193)
Q Consensus 167 ~~~~a~~illvyDit~~~Sf~~l~ 190 (193)
++.++|++|+|+|.++ +|+++.
T Consensus 128 ~l~~aDvil~VvD~~~--s~~~~~ 149 (339)
T PRK15494 128 SLHSADLVLLIIDSLK--SFDDIT 149 (339)
T ss_pred HhhhCCEEEEEEECCC--CCCHHH
Confidence 4679999999999654 455543
No 160
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.22 E-value=2.5e-11 Score=98.97 Aligned_cols=86 Identities=21% Similarity=0.375 Sum_probs=65.5
Q ss_pred EEEEECCCCCChhhHH-hhhcCccc-c-----------------ccccceeeeEEEEEEE-----CCeEEEEEEEeCCCC
Q 029430 102 KISLLGDCQIGKTSFV-KYVGNEQE-R-----------------SLQMAGLNLINKTLMV-----QGARIAFSIWDVGGD 157 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~~~f~-~-----------------~~~t~g~~~~~~~i~v-----~~~~v~l~iwD~~G~ 157 (193)
+|+++|..++|||||+ +++...+. . .....|..+....+.+ ++..+.+++|||+|+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 6899999999999999 99875433 1 0122334433333322 456799999999999
Q ss_pred CCCCcchhhhccCCcEEEEEEECCChhhHH
Q 029430 158 SRSFDHVPIACKDAVAILFMFDLTSRCTLN 187 (193)
Q Consensus 158 e~~~~~~~~~~~~a~~illvyDit~~~Sf~ 187 (193)
++|......++..+|++|+|+|.++..+++
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~ 111 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSN 111 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHH
Confidence 999888888999999999999999876664
No 161
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.22 E-value=3.4e-11 Score=107.87 Aligned_cols=84 Identities=20% Similarity=0.281 Sum_probs=65.0
Q ss_pred eEEEEECCCCCChhhHH-hhhcCccc--cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCC--------cchhhhcc
Q 029430 101 LKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF--------DHVPIACK 169 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~~~f~--~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~--------~~~~~~~~ 169 (193)
.||+++|.+|||||||+ ++++.+.. ...+.+..+.....+.+++ ..+.+|||+|++... .....++.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 58999999999999999 99988753 3444444566666777777 789999999998722 22345688
Q ss_pred CCcEEEEEEECCChhhH
Q 029430 170 DAVAILFMFDLTSRCTL 186 (193)
Q Consensus 170 ~a~~illvyDit~~~Sf 186 (193)
.+|++|+|+|.++..+.
T Consensus 80 ~ad~il~vvd~~~~~~~ 96 (435)
T PRK00093 80 EADVILFVVDGRAGLTP 96 (435)
T ss_pred hCCEEEEEEECCCCCCH
Confidence 99999999999885443
No 162
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.20 E-value=9.1e-11 Score=90.07 Aligned_cols=88 Identities=22% Similarity=0.337 Sum_probs=63.3
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCccc--cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCc----------ch-h
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD----------HV-P 165 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f~--~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~----------~~-~ 165 (193)
.+||+++|++|+|||||+ ++++..+. ...+....+.....+..++. .+.+||++|...... .. .
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGK--KYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCe--eEEEEECCCCccccchhccHHHHHHHHHH
Confidence 479999999999999999 99987754 33343434444455666664 467999999765421 11 2
Q ss_pred hhccCCcEEEEEEECCChhhHHHH
Q 029430 166 IACKDAVAILFMFDLTSRCTLNRF 189 (193)
Q Consensus 166 ~~~~~a~~illvyDit~~~Sf~~l 189 (193)
.++..+|++++|+|.+++.+++..
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~ 103 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDL 103 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHH
Confidence 256789999999999998776554
No 163
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.19 E-value=5.7e-11 Score=90.22 Aligned_cols=82 Identities=21% Similarity=0.291 Sum_probs=60.3
Q ss_pred EEECCCCCChhhHH-hhhcCccc--cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCc--------chhhhccCCc
Q 029430 104 SLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD--------HVPIACKDAV 172 (193)
Q Consensus 104 vllGd~gvGKTSLl-r~~~~~f~--~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~--------~~~~~~~~a~ 172 (193)
+++|++|||||||+ ++.+.... ...+.+..+.....+..++ ..+.+|||+|.+.+.. ....+++++|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence 47999999999999 99887633 3334344445455566665 6789999999988654 2335678899
Q ss_pred EEEEEEECCChhhHH
Q 029430 173 AILFMFDLTSRCTLN 187 (193)
Q Consensus 173 ~illvyDit~~~Sf~ 187 (193)
++++|+|..+..++.
T Consensus 79 ~ii~v~d~~~~~~~~ 93 (157)
T cd01894 79 VILFVVDGREGLTPA 93 (157)
T ss_pred EEEEEEeccccCCcc
Confidence 999999998765443
No 164
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.18 E-value=4.9e-11 Score=94.42 Aligned_cols=89 Identities=13% Similarity=0.203 Sum_probs=61.2
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCC----------CCcchh
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR----------SFDHVP 165 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~----------~~~~~~ 165 (193)
....||+++|++|+|||||+ ++.++.+. .+.++.|.......+..++ .+.+||++|... +..+..
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~ 92 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKLIE 92 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHHHH
Confidence 44789999999999999999 99988755 4445555433222333343 689999999532 333334
Q ss_pred hhccC---CcEEEEEEECCChhhHHHH
Q 029430 166 IACKD---AVAILFMFDLTSRCTLNRF 189 (193)
Q Consensus 166 ~~~~~---a~~illvyDit~~~Sf~~l 189 (193)
.|++. ++++|+|+|.+++-+..+.
T Consensus 93 ~~l~~~~~~~~ii~vvd~~~~~~~~~~ 119 (179)
T TIGR03598 93 EYLEKRENLKGVVLLMDIRHPLKELDL 119 (179)
T ss_pred HHHHhChhhcEEEEEecCCCCCCHHHH
Confidence 55554 5799999999886555543
No 165
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.18 E-value=6.1e-11 Score=92.00 Aligned_cols=84 Identities=19% Similarity=0.197 Sum_probs=59.0
Q ss_pred EECCCCCChhhHH-hhhcCccc--cccc-cceeeeEEEEEEEC-CeEEEEEEEeCCCCCC----CCcch---hhhccCCc
Q 029430 105 LLGDCQIGKTSFV-KYVGNEQE--RSLQ-MAGLNLINKTLMVQ-GARIAFSIWDVGGDSR----SFDHV---PIACKDAV 172 (193)
Q Consensus 105 llGd~gvGKTSLl-r~~~~~f~--~~~~-t~g~~~~~~~i~v~-~~~v~l~iwD~~G~e~----~~~~~---~~~~~~a~ 172 (193)
++|++|||||||+ ++.+.++. .+.. |...+. ..+.++ + ..+.+||++|... ...+. ..++++++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~--~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d 76 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNL--GVVEVPDG--ARIQVADIPGLIEGASEGRGLGNQFLAHIRRAD 76 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcc--eEEEcCCC--CeEEEEeccccchhhhcCCCccHHHHHHHhccC
Confidence 5899999999999 99988753 3322 333332 344555 4 6689999999733 23332 23577899
Q ss_pred EEEEEEECCCh------hhHHHHHhc
Q 029430 173 AILFMFDLTSR------CTLNRFDHN 192 (193)
Q Consensus 173 ~illvyDit~~------~Sf~~l~~W 192 (193)
++++|+|.++. .+++++..|
T Consensus 77 ~ii~v~d~~~~~~~~~~~~~~~~~~~ 102 (176)
T cd01881 77 AILHVVDASEDDDIGGVDPLEDYEIL 102 (176)
T ss_pred EEEEEEeccCCccccccCHHHHHHHH
Confidence 99999999998 578776655
No 166
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=1.8e-11 Score=96.95 Aligned_cols=88 Identities=24% Similarity=0.314 Sum_probs=72.4
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCcc------c--cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhcc
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQ------E--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACK 169 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f------~--~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~ 169 (193)
..|-++++|..++|||+|+ .....-. + +-.+|+|.+.. ++.+++ ..+.+||.+||+..+++|..||.
T Consensus 16 e~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig--~i~v~~--~~l~fwdlgGQe~lrSlw~~yY~ 91 (197)
T KOG0076|consen 16 EDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIG--TIEVCN--APLSFWDLGGQESLRSLWKKYYW 91 (197)
T ss_pred hhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeec--ceeecc--ceeEEEEcCChHHHHHHHHHHHH
Confidence 3678999999999999999 7654322 1 34567888774 555664 67889999999999999999999
Q ss_pred CCcEEEEEEECCChhhHHHHH
Q 029430 170 DAVAILFMFDLTSRCTLNRFD 190 (193)
Q Consensus 170 ~a~~illvyDit~~~Sf~~l~ 190 (193)
.++++|+++|.+|++.|+...
T Consensus 92 ~~H~ii~viDa~~~eR~~~~~ 112 (197)
T KOG0076|consen 92 LAHGIIYVIDATDRERFEESK 112 (197)
T ss_pred HhceeEEeecCCCHHHHHHHH
Confidence 999999999999999988754
No 167
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.16 E-value=4.8e-11 Score=95.46 Aligned_cols=85 Identities=14% Similarity=0.144 Sum_probs=57.4
Q ss_pred eEEEEECCCCCChhhHH-hhhcC----ccc----cc--cccceeeeEEEEEE----------ECCeEEEEEEEeCCCCCC
Q 029430 101 LKISLLGDCQIGKTSFV-KYVGN----EQE----RS--LQMAGLNLINKTLM----------VQGARIAFSIWDVGGDSR 159 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~~----~f~----~~--~~t~g~~~~~~~i~----------v~~~~v~l~iwD~~G~e~ 159 (193)
++|+++|+.++|||||+ +|+.. .+. +. ..|++..+....+. .++....+++|||+|+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 48999999999999999 99872 222 11 23555555444443 124468899999999865
Q ss_pred CCcchhhhccCCcEEEEEEECCChhh
Q 029430 160 SFDHVPIACKDAVAILFMFDLTSRCT 185 (193)
Q Consensus 160 ~~~~~~~~~~~a~~illvyDit~~~S 185 (193)
+..........+|++++|+|.++..+
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~ 106 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQ 106 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCcc
Confidence 42222223456789999999988443
No 168
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.15 E-value=2e-10 Score=107.05 Aligned_cols=91 Identities=10% Similarity=0.097 Sum_probs=72.1
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEE
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 176 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~ill 176 (193)
...+|+++|..++|||||+ ++.+.++. .+.+.+..++....+.+++.. .+.+|||+|++.|..++...+..+|++|+
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~-~i~~iDTPGhe~F~~~r~rga~~aDiaIL 164 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGK-MITFLDTPGHEAFTSMRARGAKVTDIVVL 164 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCc-EEEEEECCCCcchhhHHHhhhccCCEEEE
Confidence 3468999999999999999 99988887 444444445544556665432 78999999999999999989999999999
Q ss_pred EEECCC---hhhHHHHH
Q 029430 177 MFDLTS---RCTLNRFD 190 (193)
Q Consensus 177 vyDit~---~~Sf~~l~ 190 (193)
|||.++ +++++.+.
T Consensus 165 VVda~dgv~~qT~e~i~ 181 (587)
T TIGR00487 165 VVAADDGVMPQTIEAIS 181 (587)
T ss_pred EEECCCCCCHhHHHHHH
Confidence 999886 56666553
No 169
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.15 E-value=3.6e-11 Score=92.86 Aligned_cols=85 Identities=22% Similarity=0.390 Sum_probs=76.6
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccccccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEE
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illv 177 (193)
.+.+++++|-.|+|||+++ ++.-++.....||+|++. .++.+ +.+++++||.+||-..+..|+.||.+.+++|+|
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevvttkPtigfnv--e~v~y--KNLk~~vwdLggqtSirPyWRcYy~dt~avIyV 92 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGFNV--ETVPY--KNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYV 92 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCcccccCCCCCcCc--ccccc--ccccceeeEccCcccccHHHHHHhcccceEEEE
Confidence 5789999999999999999 999999999999999876 45555 559999999999999999999999999999999
Q ss_pred EECCChhhHH
Q 029430 178 FDLTSRCTLN 187 (193)
Q Consensus 178 yDit~~~Sf~ 187 (193)
.|.+|++..-
T Consensus 93 VDssd~dris 102 (182)
T KOG0072|consen 93 VDSSDRDRIS 102 (182)
T ss_pred Eeccchhhhh
Confidence 9999987543
No 170
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.14 E-value=7.1e-11 Score=92.50 Aligned_cols=84 Identities=11% Similarity=0.058 Sum_probs=62.6
Q ss_pred EEEEECCCCCChhhHH-hhhcCccc-cccc----------------cceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcc
Q 029430 102 KISLLGDCQIGKTSFV-KYVGNEQE-RSLQ----------------MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH 163 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~~~f~-~~~~----------------t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~ 163 (193)
+|+++|+.|+|||||+ .+++..+. .... .+..+.....+... ...+.+||++|++.+...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~ 78 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP--DRRVNFIDTPGHEDFSSE 78 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC--CEEEEEEeCCCcHHHHHH
Confidence 4899999999999999 99888776 2211 11122222223333 478999999999999888
Q ss_pred hhhhccCCcEEEEEEECCChhhHH
Q 029430 164 VPIACKDAVAILFMFDLTSRCTLN 187 (193)
Q Consensus 164 ~~~~~~~a~~illvyDit~~~Sf~ 187 (193)
+..+++.+|++++|+|.++..+.+
T Consensus 79 ~~~~~~~~d~~i~v~d~~~~~~~~ 102 (189)
T cd00881 79 VIRGLSVSDGAILVVDANEGVQPQ 102 (189)
T ss_pred HHHHHHhcCEEEEEEECCCCCcHH
Confidence 889999999999999998865443
No 171
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.13 E-value=2.9e-10 Score=101.56 Aligned_cols=90 Identities=21% Similarity=0.307 Sum_probs=67.6
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccc--cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcch-----------
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHV----------- 164 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~--~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~----------- 164 (193)
..+||+++|.+++|||||+ ++++.+.. ...+.+..+.....+..++. .+.+|||+|..++....
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~~~ 248 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVLRT 248 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEEECCCccccccchhhHHHHHHHHH
Confidence 3589999999999999999 99987644 33443434554556666664 68899999987665432
Q ss_pred hhhccCCcEEEEEEECCChhhHHHHH
Q 029430 165 PIACKDAVAILFMFDLTSRCTLNRFD 190 (193)
Q Consensus 165 ~~~~~~a~~illvyDit~~~Sf~~l~ 190 (193)
..+++.+|++|+|+|.++..++++.+
T Consensus 249 ~~~~~~ad~~ilV~D~~~~~~~~~~~ 274 (429)
T TIGR03594 249 LKAIERADVVLLVLDATEGITEQDLR 274 (429)
T ss_pred HHHHHhCCEEEEEEECCCCccHHHHH
Confidence 23678999999999999987776643
No 172
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.13 E-value=9.8e-11 Score=93.05 Aligned_cols=85 Identities=13% Similarity=0.192 Sum_probs=59.8
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCC----------CCCcchhh
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS----------RSFDHVPI 166 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e----------~~~~~~~~ 166 (193)
...||+++|++|+|||||+ ++.++++. .+.++.|.........+ ...+.||||+|.. ++..+...
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~ 99 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEE 99 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHHHH
Confidence 4689999999999999999 99998765 66666654432222222 3679999999953 33344455
Q ss_pred hccCC---cEEEEEEECCChhhH
Q 029430 167 ACKDA---VAILFMFDLTSRCTL 186 (193)
Q Consensus 167 ~~~~a---~~illvyDit~~~Sf 186 (193)
|++.+ +++++|+|.+++.+.
T Consensus 100 ~~~~~~~~~~~~~v~d~~~~~~~ 122 (196)
T PRK00454 100 YLRTRENLKGVVLLIDSRHPLKE 122 (196)
T ss_pred HHHhCccceEEEEEEecCCCCCH
Confidence 66654 578888998876544
No 173
>PRK11058 GTPase HflX; Provisional
Probab=99.13 E-value=1.9e-10 Score=103.56 Aligned_cols=90 Identities=18% Similarity=0.182 Sum_probs=65.7
Q ss_pred eEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCC--Ccchhh------hccC
Q 029430 101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS--FDHVPI------ACKD 170 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~--~~~~~~------~~~~ 170 (193)
.+|+++|.+|||||||+ ++.+.++. ...+....+.....+.+++. -.+.+|||+|..+. ..++.. .+++
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ 276 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETRQ 276 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence 58999999999999999 99987754 33333334555566666652 25679999998442 223332 3688
Q ss_pred CcEEEEEEECCChhhHHHHHh
Q 029430 171 AVAILFMFDLTSRCTLNRFDH 191 (193)
Q Consensus 171 a~~illvyDit~~~Sf~~l~~ 191 (193)
+|++|+|+|.+++.+++++..
T Consensus 277 ADlIL~VvDaS~~~~~e~l~~ 297 (426)
T PRK11058 277 ATLLLHVVDAADVRVQENIEA 297 (426)
T ss_pred CCEEEEEEeCCCccHHHHHHH
Confidence 999999999999998888643
No 174
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.12 E-value=3.8e-10 Score=93.83 Aligned_cols=86 Identities=20% Similarity=0.311 Sum_probs=61.4
Q ss_pred EEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCC----c---chhhhccCCc
Q 029430 102 KISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF----D---HVPIACKDAV 172 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~----~---~~~~~~~~a~ 172 (193)
|++++|.+|+|||||+ ++.+.... ...+....+.....+.+++ ..+++||++|+.+.. . ....+++++|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 7899999999999999 99877643 3223222334445566666 678999999986543 1 2235789999
Q ss_pred EEEEEEECCChh-hHHHH
Q 029430 173 AILFMFDLTSRC-TLNRF 189 (193)
Q Consensus 173 ~illvyDit~~~-Sf~~l 189 (193)
++++|+|.++++ ..+.+
T Consensus 80 ~il~V~D~t~~~~~~~~~ 97 (233)
T cd01896 80 LILMVLDATKPEGHREIL 97 (233)
T ss_pred EEEEEecCCcchhHHHHH
Confidence 999999999866 44433
No 175
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.09 E-value=1.5e-10 Score=105.74 Aligned_cols=95 Identities=21% Similarity=0.263 Sum_probs=76.6
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcCccccccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEE
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 176 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~~f~~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~ill 176 (193)
...++||++||.|||||||+ .++.++|++..|..-..+. ....+....+...|.|++..++.+.....-++.||++.+
T Consensus 7 ~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~-IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~l 85 (625)
T KOG1707|consen 7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRIL-IPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVICL 85 (625)
T ss_pred ccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccc-cCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEEE
Confidence 45799999999999999999 9999999966665543332 223444555779999999888777666778999999999
Q ss_pred EEECCChhhHHHHH-hcC
Q 029430 177 MFDLTSRCTLNRFD-HNQ 193 (193)
Q Consensus 177 vyDit~~~Sf~~l~-~W~ 193 (193)
||++++++|++.++ .||
T Consensus 86 vyavd~~~T~D~ist~WL 103 (625)
T KOG1707|consen 86 VYAVDDESTVDRISTKWL 103 (625)
T ss_pred EEecCChHHhhhhhhhhh
Confidence 99999999999984 564
No 176
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.07 E-value=7e-10 Score=106.27 Aligned_cols=91 Identities=10% Similarity=0.085 Sum_probs=72.0
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEE
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~il 175 (193)
...-.|+++|..++|||||+ ++..+++. .....+..+.....+.+++ ..++||||+|++.|..++..+++.+|++|
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDiaI 365 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIVV 365 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEEE
Confidence 34568999999999999999 99888776 3333333344444566665 57889999999999999998999999999
Q ss_pred EEEECCC---hhhHHHHH
Q 029430 176 FMFDLTS---RCTLNRFD 190 (193)
Q Consensus 176 lvyDit~---~~Sf~~l~ 190 (193)
||||.++ +++++.+.
T Consensus 366 LVVdAddGv~~qT~e~i~ 383 (787)
T PRK05306 366 LVVAADDGVMPQTIEAIN 383 (787)
T ss_pred EEEECCCCCCHhHHHHHH
Confidence 9999988 66766653
No 177
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.07 E-value=2.3e-10 Score=83.94 Aligned_cols=62 Identities=16% Similarity=0.172 Sum_probs=50.5
Q ss_pred eEEEEECCCCCChhhHH-hhhcCccc-ccc-ccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEE
Q 029430 101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~~~f~-~~~-~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illv 177 (193)
+|++++|+.|||||||+ +|..+.|. .+. +|+| +......+++.++++++|
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v 53 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC 53 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence 59999999999999999 99888886 333 4554 344456678889999999
Q ss_pred EECCChhhHHHH
Q 029430 178 FDLTSRCTLNRF 189 (193)
Q Consensus 178 yDit~~~Sf~~l 189 (193)
||.++++||+++
T Consensus 54 ~~~~~~~s~~~~ 65 (124)
T smart00010 54 WRVDDRDSADNK 65 (124)
T ss_pred EEccCHHHHHHH
Confidence 999999999875
No 178
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.07 E-value=4.6e-10 Score=85.14 Aligned_cols=82 Identities=18% Similarity=0.197 Sum_probs=56.9
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCccc--cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcc--------hhhhc
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH--------VPIAC 168 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f~--~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~--------~~~~~ 168 (193)
..||+++|..|+|||||+ ++.+.++. ...+...... ...........+.+||++|....... ....+
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 80 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNR--IRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSAL 80 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceece--EEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHH
Confidence 679999999999999999 98877654 1111111111 11122333578999999998765432 23457
Q ss_pred cCCcEEEEEEECCCh
Q 029430 169 KDAVAILFMFDLTSR 183 (193)
Q Consensus 169 ~~a~~illvyDit~~ 183 (193)
..+|++++|+|.++.
T Consensus 81 ~~~d~i~~v~d~~~~ 95 (168)
T cd04163 81 KDVDLVLFVVDASEP 95 (168)
T ss_pred HhCCEEEEEEECCCc
Confidence 889999999999986
No 179
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.06 E-value=4.3e-10 Score=104.84 Aligned_cols=88 Identities=16% Similarity=0.180 Sum_probs=71.6
Q ss_pred eEEEEECCCCCChhhHH-hhhc---Cccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEE
Q 029430 101 LKISLLGDCQIGKTSFV-KYVG---NEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~---~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~il 175 (193)
+.|+++|..++|||||+ ++.+ +.+. ++..++..++....+.+++ ..+.+||++|+++|......++.++|++|
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 35899999999999999 9985 4454 4555666666656677776 78999999999999887778889999999
Q ss_pred EEEECCC---hhhHHHHH
Q 029430 176 FMFDLTS---RCTLNRFD 190 (193)
Q Consensus 176 lvyDit~---~~Sf~~l~ 190 (193)
+|+|.++ +++++.+.
T Consensus 79 LVVDa~~G~~~qT~ehl~ 96 (581)
T TIGR00475 79 LVVDADEGVMTQTGEHLA 96 (581)
T ss_pred EEEECCCCCcHHHHHHHH
Confidence 9999998 67777653
No 180
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.06 E-value=3e-10 Score=101.42 Aligned_cols=83 Identities=20% Similarity=0.276 Sum_probs=62.0
Q ss_pred EEEEECCCCCChhhHH-hhhcCccc--cccccceeeeEEEEEEECCeEEEEEEEeCCCCCC--------CCcchhhhccC
Q 029430 102 KISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR--------SFDHVPIACKD 170 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~~~f~--~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~--------~~~~~~~~~~~ 170 (193)
||+++|.+|||||||+ ++++.+.. ...+.+..+.....+.+++ ..+.+|||+|.+. +......+++.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence 6899999999999999 99987753 3344444455556666777 4689999999743 33344567899
Q ss_pred CcEEEEEEECCChhhH
Q 029430 171 AVAILFMFDLTSRCTL 186 (193)
Q Consensus 171 a~~illvyDit~~~Sf 186 (193)
+|++|+|+|.++..+.
T Consensus 79 ad~vl~vvD~~~~~~~ 94 (429)
T TIGR03594 79 ADVILFVVDGREGLTP 94 (429)
T ss_pred CCEEEEEEeCCCCCCH
Confidence 9999999999875443
No 181
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.05 E-value=4.3e-10 Score=107.00 Aligned_cols=92 Identities=10% Similarity=0.124 Sum_probs=72.3
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccc-cccc--cceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEE
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQ--MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 174 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~--t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~i 174 (193)
...+|+++|..++|||||+ ++....+. .... |.....+...+..++....+.+|||+|++.|..++..++..+|++
T Consensus 243 r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDia 322 (742)
T CHL00189 243 RPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDIA 322 (742)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCEE
Confidence 3568999999999999999 99988776 3333 332333333444455668999999999999999999999999999
Q ss_pred EEEEECCC---hhhHHHHH
Q 029430 175 LFMFDLTS---RCTLNRFD 190 (193)
Q Consensus 175 llvyDit~---~~Sf~~l~ 190 (193)
|+|+|.++ +.+++.+.
T Consensus 323 ILVVDA~dGv~~QT~E~I~ 341 (742)
T CHL00189 323 ILIIAADDGVKPQTIEAIN 341 (742)
T ss_pred EEEEECcCCCChhhHHHHH
Confidence 99999987 56776654
No 182
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.04 E-value=3e-10 Score=106.23 Aligned_cols=92 Identities=11% Similarity=0.173 Sum_probs=69.9
Q ss_pred eEEEEECCCCCChhhHH-hhhcC--cc---------cc---ccccceeeeEEEEEEE-----CCeEEEEEEEeCCCCCCC
Q 029430 101 LKISLLGDCQIGKTSFV-KYVGN--EQ---------ER---SLQMAGLNLINKTLMV-----QGARIAFSIWDVGGDSRS 160 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~~--~f---------~~---~~~t~g~~~~~~~i~v-----~~~~v~l~iwD~~G~e~~ 160 (193)
-+++++|..++|||||+ +++.. .+ .+ .+.+.|+.+....+.+ +++.+.+++|||+|+++|
T Consensus 8 RNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF 87 (600)
T PRK05433 8 RNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDF 87 (600)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHH
Confidence 48999999999999999 99752 11 11 1224466665544443 566899999999999999
Q ss_pred CcchhhhccCCcEEEEEEECCChhhHHHHHhc
Q 029430 161 FDHVPIACKDAVAILFMFDLTSRCTLNRFDHN 192 (193)
Q Consensus 161 ~~~~~~~~~~a~~illvyDit~~~Sf~~l~~W 192 (193)
...+..+++.+|++|+|+|.++....+....|
T Consensus 88 ~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~ 119 (600)
T PRK05433 88 SYEVSRSLAACEGALLVVDASQGVEAQTLANV 119 (600)
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHH
Confidence 98899999999999999999986554444433
No 183
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.04 E-value=9.5e-10 Score=93.72 Aligned_cols=60 Identities=13% Similarity=0.320 Sum_probs=50.3
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccc-c----------ccccceeeeEEEEEEECCeEEEEEEEeCCCCC
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-R----------SLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~-~----------~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e 158 (193)
..+||+++|++|+|||||+ ++.+..+. . ..+|++.+.....+..+|..+.+.||||+|-.
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfg 74 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFG 74 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCcc
Confidence 3789999999999999999 99988876 2 34466777777778888989999999999943
No 184
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.04 E-value=3.4e-10 Score=94.39 Aligned_cols=84 Identities=12% Similarity=0.175 Sum_probs=62.6
Q ss_pred EEEEECCCCCChhhHH-hhhcCc--------------cccc---cccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcc
Q 029430 102 KISLLGDCQIGKTSFV-KYVGNE--------------QERS---LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH 163 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~~~--------------f~~~---~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~ 163 (193)
+|+++|..|+|||||+ +++... +.++ ....|..+......++....++++|||+|+++|...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 4789999999999999 987531 0011 112344444444444445588999999999999988
Q ss_pred hhhhccCCcEEEEEEECCChhh
Q 029430 164 VPIACKDAVAILFMFDLTSRCT 185 (193)
Q Consensus 164 ~~~~~~~a~~illvyDit~~~S 185 (193)
...+++.+|++|+|+|.++.-.
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~ 102 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQ 102 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCC
Confidence 8899999999999999998644
No 185
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.03 E-value=4.5e-10 Score=106.89 Aligned_cols=89 Identities=18% Similarity=0.310 Sum_probs=67.4
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCccc--cccccceeeeEEEEEEECCeEEEEEEEeCCCCCC----------CCcch-h
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR----------SFDHV-P 165 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f~--~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~----------~~~~~-~ 165 (193)
..||+++|.+|||||||+ +++++++. ...+.+..+.....+.+++.. +.+|||+|..+ |..+. .
T Consensus 450 ~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~--~~liDTaG~~~~~~~~~~~e~~~~~r~~ 527 (712)
T PRK09518 450 LRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGED--WLFIDTAGIKRRQHKLTGAEYYSSLRTQ 527 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCE--EEEEECCCcccCcccchhHHHHHHHHHH
Confidence 479999999999999999 99998753 445545566666677788865 55999999643 11111 2
Q ss_pred hhccCCcEEEEEEECCChhhHHHHH
Q 029430 166 IACKDAVAILFMFDLTSRCTLNRFD 190 (193)
Q Consensus 166 ~~~~~a~~illvyDit~~~Sf~~l~ 190 (193)
.+++.+|++|+|+|.++..+++.+.
T Consensus 528 ~~i~~advvilViDat~~~s~~~~~ 552 (712)
T PRK09518 528 AAIERSELALFLFDASQPISEQDLK 552 (712)
T ss_pred HHhhcCCEEEEEEECCCCCCHHHHH
Confidence 3468899999999999988887754
No 186
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.03 E-value=5.7e-10 Score=104.09 Aligned_cols=90 Identities=18% Similarity=0.186 Sum_probs=67.1
Q ss_pred EEEEECCCCCChhhHH-hhhcCcccc-----ccccceeeeEEEEEE------------ECCeEEEEEEEeCCCCCCCCcc
Q 029430 102 KISLLGDCQIGKTSFV-KYVGNEQER-----SLQMAGLNLINKTLM------------VQGARIAFSIWDVGGDSRSFDH 163 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~~~f~~-----~~~t~g~~~~~~~i~------------v~~~~v~l~iwD~~G~e~~~~~ 163 (193)
-|+++|..++|||||+ ++.+..+.. ..+++|..+...... ++.....+.+|||+|++.|..+
T Consensus 6 iV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~l 85 (590)
T TIGR00491 6 IVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTNL 85 (590)
T ss_pred EEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHHH
Confidence 4899999999999999 999887762 223445444322110 0111123889999999999999
Q ss_pred hhhhccCCcEEEEEEECCC---hhhHHHHHh
Q 029430 164 VPIACKDAVAILFMFDLTS---RCTLNRFDH 191 (193)
Q Consensus 164 ~~~~~~~a~~illvyDit~---~~Sf~~l~~ 191 (193)
+..+++.+|++|+|||+++ +.+++.+..
T Consensus 86 ~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~ 116 (590)
T TIGR00491 86 RKRGGALADLAILIVDINEGFKPQTQEALNI 116 (590)
T ss_pred HHHHHhhCCEEEEEEECCcCCCHhHHHHHHH
Confidence 9999999999999999997 788877653
No 187
>PRK10218 GTP-binding protein; Provisional
Probab=99.03 E-value=8.8e-10 Score=103.13 Aligned_cols=84 Identities=17% Similarity=0.213 Sum_probs=71.4
Q ss_pred eeEEEEECCCCCChhhHH-hhhc--Ccccc-------------ccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcc
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVG--NEQER-------------SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH 163 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~--~~f~~-------------~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~ 163 (193)
-.||+++|..++|||||+ +|+. +.|.. .+.+.|..+..+...++...+++++|||+|+++|...
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~ 84 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGE 84 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHH
Confidence 358999999999999999 9986 44431 1336677887777777777799999999999999999
Q ss_pred hhhhccCCcEEEEEEECCCh
Q 029430 164 VPIACKDAVAILFMFDLTSR 183 (193)
Q Consensus 164 ~~~~~~~a~~illvyDit~~ 183 (193)
+..+++.+|++|+|+|.++.
T Consensus 85 v~~~l~~aDg~ILVVDa~~G 104 (607)
T PRK10218 85 VERVMSMVDSVLLVVDAFDG 104 (607)
T ss_pred HHHHHHhCCEEEEEEecccC
Confidence 99999999999999999874
No 188
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.02 E-value=4.5e-10 Score=85.53 Aligned_cols=79 Identities=15% Similarity=0.257 Sum_probs=56.8
Q ss_pred EEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCC----------CCcchhhhcc
Q 029430 102 KISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR----------SFDHVPIACK 169 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~----------~~~~~~~~~~ 169 (193)
+|+++|++|+|||||+ .+.++.+. ...++.+.......+..++ .+.+||+.|... +......|+.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 4899999999999999 99977666 5666666655444444444 889999998433 3344444554
Q ss_pred C---CcEEEEEEECCCh
Q 029430 170 D---AVAILFMFDLTSR 183 (193)
Q Consensus 170 ~---a~~illvyDit~~ 183 (193)
. .+++++++|.++.
T Consensus 78 ~~~~~~~~~~v~d~~~~ 94 (170)
T cd01876 78 NRENLKGVVLLIDSRHG 94 (170)
T ss_pred hChhhhEEEEEEEcCcC
Confidence 3 4688899999875
No 189
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=98.99 E-value=1.5e-09 Score=91.87 Aligned_cols=83 Identities=17% Similarity=0.190 Sum_probs=58.7
Q ss_pred EEEEECCCCCChhhHH-hhhcCccc--c-ccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCC-cc-------hhhhcc
Q 029430 102 KISLLGDCQIGKTSFV-KYVGNEQE--R-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF-DH-------VPIACK 169 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~~~f~--~-~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~-~~-------~~~~~~ 169 (193)
+|+++|.+|||||||+ ++++..+. . ...|+.... +.+..++ ...+.+|||+|..... .+ ...++.
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i--~~i~~~~-~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~ 78 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRI--SGIHTTG-ASQIIFIDTPGFHEKKHSLNRLMMKEARSAIG 78 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcE--EEEEEcC-CcEEEEEECcCCCCCcchHHHHHHHHHHHHHh
Confidence 6899999999999999 99998764 2 222443222 2333332 2568999999986532 21 234578
Q ss_pred CCcEEEEEEECCChhhHH
Q 029430 170 DAVAILFMFDLTSRCTLN 187 (193)
Q Consensus 170 ~a~~illvyDit~~~Sf~ 187 (193)
++|++++|+|.++..+++
T Consensus 79 ~aDvvl~VvD~~~~~~~~ 96 (270)
T TIGR00436 79 GVDLILFVVDSDQWNGDG 96 (270)
T ss_pred hCCEEEEEEECCCCCchH
Confidence 999999999999887764
No 190
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=98.99 E-value=4.6e-10 Score=87.69 Aligned_cols=73 Identities=12% Similarity=0.177 Sum_probs=49.9
Q ss_pred EEEEECCCCCChhhHH-hhhcCccccccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcch----hhhccCCcEEEE
Q 029430 102 KISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHV----PIACKDAVAILF 176 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~~~f~~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~----~~~~~~a~~ill 176 (193)
||+++|.++||||||+ ++. +.+.....+.+.+ +++. .+||++|+......+ ...++.+|++|+
T Consensus 3 ~i~~iG~~~~GKstl~~~l~-~~~~~~~~~~~v~-------~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~ 70 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQ-GNYTLARKTQAVE-------FNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLIY 70 (158)
T ss_pred EEEEECCCCCCHHHHHHHHc-CCCccCccceEEE-------ECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEEE
Confidence 7999999999999999 854 5444222333332 2222 279999984322212 123689999999
Q ss_pred EEECCChhhH
Q 029430 177 MFDLTSRCTL 186 (193)
Q Consensus 177 vyDit~~~Sf 186 (193)
|||.++.+++
T Consensus 71 v~d~~~~~s~ 80 (158)
T PRK15467 71 VHGANDPESR 80 (158)
T ss_pred EEeCCCcccc
Confidence 9999998776
No 191
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=98.99 E-value=1.9e-09 Score=94.31 Aligned_cols=89 Identities=13% Similarity=0.151 Sum_probs=62.7
Q ss_pred EEEEECCCCCChhhHH-hhhcCccc-cccc--cceeeeEEEEEEECCeEEEEEEEeCCCCCC----CCcchhhh---ccC
Q 029430 102 KISLLGDCQIGKTSFV-KYVGNEQE-RSLQ--MAGLNLINKTLMVQGARIAFSIWDVGGDSR----SFDHVPIA---CKD 170 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~~~f~-~~~~--t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~----~~~~~~~~---~~~ 170 (193)
.|.|||.++||||||+ ++...+.. ..++ |+... .-.+.++ ....+.+||++|.-+ ...+...| +..
T Consensus 160 dVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~--~G~v~~~-~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~ 236 (335)
T PRK12299 160 DVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPN--LGVVRVD-DYKSFVIADIPGLIEGASEGAGLGHRFLKHIER 236 (335)
T ss_pred CEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCce--EEEEEeC-CCcEEEEEeCCCccCCCCccccHHHHHHHHhhh
Confidence 5899999999999999 98876544 3333 33322 2344442 124688999998743 22344444 446
Q ss_pred CcEEEEEEECCChhhHHHHHhcC
Q 029430 171 AVAILFMFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 171 a~~illvyDit~~~Sf~~l~~W~ 193 (193)
++++|+|+|+++.++|++++.|.
T Consensus 237 a~vlI~ViD~s~~~s~e~~~~~~ 259 (335)
T PRK12299 237 TRLLLHLVDIEAVDPVEDYKTIR 259 (335)
T ss_pred cCEEEEEEcCCCCCCHHHHHHHH
Confidence 89999999999988999988873
No 192
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=98.99 E-value=1.8e-09 Score=94.28 Aligned_cols=91 Identities=14% Similarity=0.161 Sum_probs=62.5
Q ss_pred eEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCC----CCcchhhhcc---CC
Q 029430 101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR----SFDHVPIACK---DA 171 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~----~~~~~~~~~~---~a 171 (193)
..|.++|.++||||||+ ++...+.. ..++.+..+.....+.+++ ...+.|||++|..+ ...+...|++ .+
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhiera 236 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIERT 236 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence 36899999999999999 99887644 2222111222223444543 36789999999753 2345555555 59
Q ss_pred cEEEEEEECCCh---hhHHHHHhc
Q 029430 172 VAILFMFDLTSR---CTLNRFDHN 192 (193)
Q Consensus 172 ~~illvyDit~~---~Sf~~l~~W 192 (193)
+++|+|+|+++. +++++++.|
T Consensus 237 d~ll~VvD~s~~~~~~~~e~l~~l 260 (329)
T TIGR02729 237 RVLLHLIDISPLDGRDPIEDYEII 260 (329)
T ss_pred CEEEEEEcCccccccCHHHHHHHH
Confidence 999999999987 677777665
No 193
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.95 E-value=5.6e-10 Score=88.03 Aligned_cols=88 Identities=17% Similarity=0.226 Sum_probs=75.8
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCccccccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEEE
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 178 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f~~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illvy 178 (193)
.-|++++|-.++|||+|+ ++.+++...+.||.-... ..+.+.| ++++.+|.+|+.+-+..|..|+..+|++++.+
T Consensus 20 ~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPTS--E~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lv 95 (193)
T KOG0077|consen 20 FGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTS--EELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVYLV 95 (193)
T ss_pred CceEEEEeecCCchhhHHHHHccccccccCCCcCCCh--HHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeEeee
Confidence 459999999999999999 988888777777664332 4556677 89999999999999999999999999999999
Q ss_pred ECCChhhHHHHHh
Q 029430 179 DLTSRCTLNRFDH 191 (193)
Q Consensus 179 Dit~~~Sf~~l~~ 191 (193)
|..|.+.|.+.++
T Consensus 96 da~d~er~~es~~ 108 (193)
T KOG0077|consen 96 DAYDQERFAESKK 108 (193)
T ss_pred ehhhHHHhHHHHH
Confidence 9999999988653
No 194
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.94 E-value=4.1e-09 Score=100.40 Aligned_cols=83 Identities=19% Similarity=0.292 Sum_probs=60.8
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccc--cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCC--------cchhhh
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF--------DHVPIA 167 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~--~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~--------~~~~~~ 167 (193)
...+|+++|.++||||||+ ++++.++. ...+.+..+........++ ..+.+|||+|.+... .....+
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 351 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQIA 351 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence 3578999999999999999 99987754 3334444444444445555 568899999987422 233456
Q ss_pred ccCCcEEEEEEECCCh
Q 029430 168 CKDAVAILFMFDLTSR 183 (193)
Q Consensus 168 ~~~a~~illvyDit~~ 183 (193)
+..+|++|+|+|.++.
T Consensus 352 ~~~aD~iL~VvDa~~~ 367 (712)
T PRK09518 352 VSLADAVVFVVDGQVG 367 (712)
T ss_pred HHhCCEEEEEEECCCC
Confidence 8899999999999873
No 195
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.93 E-value=3.1e-09 Score=88.62 Aligned_cols=85 Identities=18% Similarity=0.235 Sum_probs=54.0
Q ss_pred EEEEECCCCCChhhHHhhhcCccc--c---ccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcc-----hhhhccCC
Q 029430 102 KISLLGDCQIGKTSFVKYVGNEQE--R---SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH-----VPIACKDA 171 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~f~--~---~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~-----~~~~~~~a 171 (193)
||+++|..++||||+.+.+-.++. + ..+|+..+. ..+. ....+.++|||++||..+... ....+++.
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~--~~v~-~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v 77 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEK--SHVR-FLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNV 77 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEE--EEEE-CTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceE--EEEe-cCCCcEEEEEEcCCccccccccccccHHHHHhcc
Confidence 899999999999999944444332 2 234554432 2222 123379999999999876543 46678999
Q ss_pred cEEEEEEECCChhhHHHH
Q 029430 172 VAILFMFDLTSRCTLNRF 189 (193)
Q Consensus 172 ~~illvyDit~~~Sf~~l 189 (193)
.++|+|+|+.+.+-.+++
T Consensus 78 ~~LIyV~D~qs~~~~~~l 95 (232)
T PF04670_consen 78 GVLIYVFDAQSDDYDEDL 95 (232)
T ss_dssp SEEEEEEETT-STCHHHH
T ss_pred CEEEEEEEcccccHHHHH
Confidence 999999999965544333
No 196
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=98.92 E-value=4.8e-09 Score=78.32 Aligned_cols=84 Identities=18% Similarity=0.154 Sum_probs=59.3
Q ss_pred EECCCCCChhhHH-hhhcCccc--cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchh-------hhccCCcEE
Q 029430 105 LLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVP-------IACKDAVAI 174 (193)
Q Consensus 105 llGd~gvGKTSLl-r~~~~~f~--~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~-------~~~~~a~~i 174 (193)
++|..|+|||||+ ++.+..+. ...++...+........++ ...+.+||++|.+.+..... .+++.+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 5899999999999 88876554 2222222233333333321 47899999999987664443 478899999
Q ss_pred EEEEECCChhhHHHH
Q 029430 175 LFMFDLTSRCTLNRF 189 (193)
Q Consensus 175 llvyDit~~~Sf~~l 189 (193)
++|+|.++..+....
T Consensus 80 l~v~~~~~~~~~~~~ 94 (163)
T cd00880 80 LFVVDADLRADEEEE 94 (163)
T ss_pred EEEEeCCCCCCHHHH
Confidence 999999998776654
No 197
>PRK04004 translation initiation factor IF-2; Validated
Probab=98.92 E-value=3.2e-09 Score=99.14 Aligned_cols=92 Identities=16% Similarity=0.176 Sum_probs=66.7
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCcccccc-----ccceeeeEEEEEEE--CCeEE----------EEEEEeCCCCCCCC
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQERSL-----QMAGLNLINKTLMV--QGARI----------AFSIWDVGGDSRSF 161 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f~~~~-----~t~g~~~~~~~i~v--~~~~v----------~l~iwD~~G~e~~~ 161 (193)
.-.|+++|..++|||||+ ++.+..+.... +++|..+....... .+..+ .+.+|||+|++.|.
T Consensus 6 ~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f~ 85 (586)
T PRK04004 6 QPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAFT 85 (586)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHHH
Confidence 446999999999999999 88765443222 35555443222110 11111 26899999999999
Q ss_pred cchhhhccCCcEEEEEEECCC---hhhHHHHHh
Q 029430 162 DHVPIACKDAVAILFMFDLTS---RCTLNRFDH 191 (193)
Q Consensus 162 ~~~~~~~~~a~~illvyDit~---~~Sf~~l~~ 191 (193)
.++...+..+|++|+|+|.++ +++++.+..
T Consensus 86 ~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~ 118 (586)
T PRK04004 86 NLRKRGGALADIAILVVDINEGFQPQTIEAINI 118 (586)
T ss_pred HHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH
Confidence 999888899999999999998 788887653
No 198
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=98.90 E-value=2.6e-09 Score=95.96 Aligned_cols=88 Identities=10% Similarity=0.160 Sum_probs=63.6
Q ss_pred CceeeEEEEECCCCCChhhHH-hhhc--Cccc------------------------------cccccceeeeEEEEEEEC
Q 029430 97 DLVSLKISLLGDCQIGKTSFV-KYVG--NEQE------------------------------RSLQMAGLNLINKTLMVQ 143 (193)
Q Consensus 97 ~~~~~KivllGd~gvGKTSLl-r~~~--~~f~------------------------------~~~~t~g~~~~~~~i~v~ 143 (193)
+...++|+++|..++|||||+ +++. +... +....+..+.....+..
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~- 82 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFET- 82 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEcc-
Confidence 345799999999999999999 9975 2211 11123334444444443
Q ss_pred CeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEEEECCChhhH
Q 029430 144 GARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTL 186 (193)
Q Consensus 144 ~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illvyDit~~~Sf 186 (193)
..+.+.|||++|+++|.......+..+|++|+|+|.++.+++
T Consensus 83 -~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~ 124 (426)
T TIGR00483 83 -DKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFE 124 (426)
T ss_pred -CCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcc
Confidence 447899999999998866555567899999999999988543
No 199
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=98.89 E-value=3.1e-09 Score=92.36 Aligned_cols=80 Identities=20% Similarity=0.260 Sum_probs=58.3
Q ss_pred EEEECCCCCChhhHH-hhhcCccc-------cccccceeeeEEEE---------------EEECC-eEEEEEEEeCCCC-
Q 029430 103 ISLLGDCQIGKTSFV-KYVGNEQE-------RSLQMAGLNLINKT---------------LMVQG-ARIAFSIWDVGGD- 157 (193)
Q Consensus 103 ivllGd~gvGKTSLl-r~~~~~f~-------~~~~t~g~~~~~~~---------------i~v~~-~~v~l~iwD~~G~- 157 (193)
|.++|.++||||||. ++.+.++. ...|++|..+.... ..+++ ..+.+++||++|.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 578999999999999 99988754 22445554443211 11334 3478999999998
Q ss_pred ---CCCCcchhhh---ccCCcEEEEEEECCC
Q 029430 158 ---SRSFDHVPIA---CKDAVAILFMFDLTS 182 (193)
Q Consensus 158 ---e~~~~~~~~~---~~~a~~illvyDit~ 182 (193)
+++..+...| ++++|++++|+|++.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 5666666665 899999999999974
No 200
>PRK00093 GTP-binding protein Der; Reviewed
Probab=98.89 E-value=1.2e-08 Score=91.46 Aligned_cols=89 Identities=21% Similarity=0.324 Sum_probs=64.3
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccc--cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcc----------h-
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH----------V- 164 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~--~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~----------~- 164 (193)
..+||+++|.+++|||||+ ++++.+.. ...+.+..+.....+..++ ..+.+|||+|..+...+ .
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~~ 249 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIRT 249 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence 3699999999999999999 99977643 4444444444444555566 45679999997543322 1
Q ss_pred hhhccCCcEEEEEEECCChhhHHHH
Q 029430 165 PIACKDAVAILFMFDLTSRCTLNRF 189 (193)
Q Consensus 165 ~~~~~~a~~illvyDit~~~Sf~~l 189 (193)
..+++.+|++|+|+|.++..+.++.
T Consensus 250 ~~~~~~ad~~ilViD~~~~~~~~~~ 274 (435)
T PRK00093 250 LKAIERADVVLLVIDATEGITEQDL 274 (435)
T ss_pred HHHHHHCCEEEEEEeCCCCCCHHHH
Confidence 1367889999999999998776654
No 201
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=98.88 E-value=4.1e-09 Score=89.41 Aligned_cols=83 Identities=10% Similarity=0.148 Sum_probs=61.5
Q ss_pred eEEEEECCCCCChhhHH-hhhcCcc--c----------------cccc---cceeeeEEEEEEECCeEEEEEEEeCCCCC
Q 029430 101 LKISLLGDCQIGKTSFV-KYVGNEQ--E----------------RSLQ---MAGLNLINKTLMVQGARIAFSIWDVGGDS 158 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~~~f--~----------------~~~~---t~g~~~~~~~i~v~~~~v~l~iwD~~G~e 158 (193)
-+|+++|..|+|||||+ +++...- . ++.+ ..|..+......++...+++++|||+|++
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 36999999999999999 8874210 0 1111 12444444555555566899999999999
Q ss_pred CCCcchhhhccCCcEEEEEEECCCh
Q 029430 159 RSFDHVPIACKDAVAILFMFDLTSR 183 (193)
Q Consensus 159 ~~~~~~~~~~~~a~~illvyDit~~ 183 (193)
+|......+++.+|++|+|+|.++.
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g 107 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKG 107 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCC
Confidence 9887777788999999999999874
No 202
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=98.87 E-value=2.5e-08 Score=73.34 Aligned_cols=89 Identities=9% Similarity=0.191 Sum_probs=58.7
Q ss_pred EEEEECCCCCChhhHH-hhhcCccc--cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcc---------hhhhcc
Q 029430 102 KISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH---------VPIACK 169 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~~~f~--~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~---------~~~~~~ 169 (193)
||+++|.+|+|||||+ .+.+.... ...+....+.....+.+++..+ .++||.|-..-... ....+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~--~~vDtpG~~~~~~~~~~~~~~~~~~~~~~ 78 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKF--ILVDTPGINDGESQDNDGKEIRKFLEQIS 78 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEE--EEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeE--EEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence 6899999999999999 88875442 2223222222335566777554 69999997543211 122347
Q ss_pred CCcEEEEEEECCCh--hhHHHHHhc
Q 029430 170 DAVAILFMFDLTSR--CTLNRFDHN 192 (193)
Q Consensus 170 ~a~~illvyDit~~--~Sf~~l~~W 192 (193)
.+|++++|+|.+++ +++.++.+|
T Consensus 79 ~~d~ii~vv~~~~~~~~~~~~~~~~ 103 (116)
T PF01926_consen 79 KSDLIIYVVDASNPITEDDKNILRE 103 (116)
T ss_dssp TESEEEEEEETTSHSHHHHHHHHHH
T ss_pred HCCEEEEEEECCCCCCHHHHHHHHH
Confidence 89999999998874 355565444
No 203
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=98.84 E-value=8.3e-09 Score=85.42 Aligned_cols=87 Identities=16% Similarity=0.229 Sum_probs=62.3
Q ss_pred EEEEECCCCCChhhHH-hhhcCccc------------c---ccccceeeeEE--EEEEEC--------CeEEEEEEEeCC
Q 029430 102 KISLLGDCQIGKTSFV-KYVGNEQE------------R---SLQMAGLNLIN--KTLMVQ--------GARIAFSIWDVG 155 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~~~f~------------~---~~~t~g~~~~~--~~i~v~--------~~~v~l~iwD~~ 155 (193)
+|+++|..+.|||||+ +++...-. + .+...|+.+.. ..+.++ +..+.+++|||+
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 5899999999999999 88743210 0 00111222211 122222 457899999999
Q ss_pred CCCCCCcchhhhccCCcEEEEEEECCChhhHHH
Q 029430 156 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNR 188 (193)
Q Consensus 156 G~e~~~~~~~~~~~~a~~illvyDit~~~Sf~~ 188 (193)
|+++|......+++.+|++|+|+|+++..+.+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t 114 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT 114 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHH
Confidence 999999999999999999999999998655543
No 204
>PRK13351 elongation factor G; Reviewed
Probab=98.81 E-value=4.3e-09 Score=99.82 Aligned_cols=89 Identities=11% Similarity=0.014 Sum_probs=65.8
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCc-------------cc-c-------ccccceeeeEEEEEEECCeEEEEEEEeCCCC
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNE-------------QE-R-------SLQMAGLNLINKTLMVQGARIAFSIWDVGGD 157 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~-------------f~-~-------~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~ 157 (193)
..+|+++|..++|||||+ +++... +. + +..|+.... ..+.. ....+++|||+|+
T Consensus 8 irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~--~~~~~--~~~~i~liDtPG~ 83 (687)
T PRK13351 8 IRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAA--TSCDW--DNHRINLIDTPGH 83 (687)
T ss_pred ccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccce--EEEEE--CCEEEEEEECCCc
Confidence 579999999999999999 997521 11 1 111222222 23333 3488999999999
Q ss_pred CCCCcchhhhccCCcEEEEEEECCChhhHHHHHhc
Q 029430 158 SRSFDHVPIACKDAVAILFMFDLTSRCTLNRFDHN 192 (193)
Q Consensus 158 e~~~~~~~~~~~~a~~illvyDit~~~Sf~~l~~W 192 (193)
.+|......+++.+|++|+|+|.++..+++....|
T Consensus 84 ~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~ 118 (687)
T PRK13351 84 IDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW 118 (687)
T ss_pred HHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH
Confidence 99998889999999999999999987766654443
No 205
>PRK00089 era GTPase Era; Reviewed
Probab=98.80 E-value=2.7e-08 Score=84.71 Aligned_cols=81 Identities=16% Similarity=0.238 Sum_probs=56.1
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccc--cccc-cceeeeEEEEEEECCeEEEEEEEeCCCCCCCCc--------chhh
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQ-MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD--------HVPI 166 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~--~~~~-t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~--------~~~~ 166 (193)
..-.|+++|.+|||||||+ ++++..+. ...+ |+.... ..+... ....+.+|||+|...... ....
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i--~~i~~~-~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~ 80 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRI--RGIVTE-DDAQIIFVDTPGIHKPKRALNRAMNKAAWS 80 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccE--EEEEEc-CCceEEEEECCCCCCchhHHHHHHHHHHHH
Confidence 4567999999999999999 99988764 2222 332222 122222 237899999999765432 2233
Q ss_pred hccCCcEEEEEEECCC
Q 029430 167 ACKDAVAILFMFDLTS 182 (193)
Q Consensus 167 ~~~~a~~illvyDit~ 182 (193)
.+.++|++++|+|.++
T Consensus 81 ~~~~~D~il~vvd~~~ 96 (292)
T PRK00089 81 SLKDVDLVLFVVDADE 96 (292)
T ss_pred HHhcCCEEEEEEeCCC
Confidence 5788999999999998
No 206
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=98.79 E-value=2.7e-08 Score=89.56 Aligned_cols=88 Identities=13% Similarity=0.200 Sum_probs=59.8
Q ss_pred EEEEECCCCCChhhHH-hhhcCccc-cccc--cceeeeEEEEEEECCeEEEEEEEeCCCCCC----CCcchhhhcc---C
Q 029430 102 KISLLGDCQIGKTSFV-KYVGNEQE-RSLQ--MAGLNLINKTLMVQGARIAFSIWDVGGDSR----SFDHVPIACK---D 170 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~~~f~-~~~~--t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~----~~~~~~~~~~---~ 170 (193)
.|.|+|.++||||||+ ++.+.+.. ..+| |...++ -.+.+++ ...+.+||++|... ...+...|++ .
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~Pnl--G~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier 236 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNL--GVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIER 236 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEE--EEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhh
Confidence 6999999999999999 99887654 2233 333332 2344441 35789999999643 3345555544 5
Q ss_pred CcEEEEEEECCCh---hhHHHHHhc
Q 029430 171 AVAILFMFDLTSR---CTLNRFDHN 192 (193)
Q Consensus 171 a~~illvyDit~~---~Sf~~l~~W 192 (193)
++++|+|+|+++. ++++++..|
T Consensus 237 ~~llI~VID~s~~~~~dp~e~~~~i 261 (424)
T PRK12297 237 TRVIVHVIDMSGSEGRDPIEDYEKI 261 (424)
T ss_pred CCEEEEEEeCCccccCChHHHHHHH
Confidence 8999999999864 566665544
No 207
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=98.76 E-value=3.6e-08 Score=92.21 Aligned_cols=76 Identities=16% Similarity=0.151 Sum_probs=61.0
Q ss_pred CCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcc------hhhhc--cCCcEEEE
Q 029430 107 GDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH------VPIAC--KDAVAILF 176 (193)
Q Consensus 107 Gd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~------~~~~~--~~a~~ill 176 (193)
|++|||||||+ ++.+.++. ...+.+..+.....+++++. ++++||++|++.+... ...|+ .++|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~--~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGE--DIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCe--EEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 89999999999 99998876 66677777777777777774 5789999999987654 34444 37899999
Q ss_pred EEECCChh
Q 029430 177 MFDLTSRC 184 (193)
Q Consensus 177 vyDit~~~ 184 (193)
|+|.++.+
T Consensus 79 VvDat~le 86 (591)
T TIGR00437 79 VVDASNLE 86 (591)
T ss_pred EecCCcch
Confidence 99999854
No 208
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.76 E-value=3.2e-08 Score=79.83 Aligned_cols=79 Identities=18% Similarity=0.219 Sum_probs=50.1
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCccc-ccccccee-eeEEEEEEEC-CeEEEEEEEeCCCCCCCCcchhhh-----ccC
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGL-NLINKTLMVQ-GARIAFSIWDVGGDSRSFDHVPIA-----CKD 170 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~-~~~~~~i~v~-~~~v~l~iwD~~G~e~~~~~~~~~-----~~~ 170 (193)
.+||+++|++|+|||||+ .+.+..+. +...+++. +.......+. +....+.+||++|..........| +.+
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 379999999999999999 88886655 34444441 1110000111 112368999999987544333333 667
Q ss_pred CcEEEEEE
Q 029430 171 AVAILFMF 178 (193)
Q Consensus 171 a~~illvy 178 (193)
+|++|++.
T Consensus 81 ~d~~l~v~ 88 (197)
T cd04104 81 YDFFIIIS 88 (197)
T ss_pred cCEEEEEe
Confidence 89988874
No 209
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=98.74 E-value=1.1e-08 Score=86.24 Aligned_cols=84 Identities=18% Similarity=0.180 Sum_probs=58.5
Q ss_pred EEEEECCCCCChhhHH-hhhcCccc-c----c---------c-----ccceeeeEEEEEEECCeEEEEEEEeCCCCCCCC
Q 029430 102 KISLLGDCQIGKTSFV-KYVGNEQE-R----S---------L-----QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF 161 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~~~f~-~----~---------~-----~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~ 161 (193)
+|+++|.+|+|||||+ +++..... . . . ...........+..++ ..+++|||+|...+.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~--~~i~liDtPG~~~f~ 78 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKG--HKINLIDTPGYADFV 78 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECC--EEEEEEECcCHHHHH
Confidence 4899999999999999 88643211 0 0 0 0111122222333444 788999999998887
Q ss_pred cchhhhccCCcEEEEEEECCChhhHH
Q 029430 162 DHVPIACKDAVAILFMFDLTSRCTLN 187 (193)
Q Consensus 162 ~~~~~~~~~a~~illvyDit~~~Sf~ 187 (193)
.....+++.+|++|+|+|.++.....
T Consensus 79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~ 104 (268)
T cd04170 79 GETRAALRAADAALVVVSAQSGVEVG 104 (268)
T ss_pred HHHHHHHHHCCEEEEEEeCCCCCCHH
Confidence 77788899999999999999865443
No 210
>COG2229 Predicted GTPase [General function prediction only]
Probab=98.74 E-value=2.8e-08 Score=79.45 Aligned_cols=88 Identities=17% Similarity=0.258 Sum_probs=69.6
Q ss_pred CCceeeEEEEECCCCCChhhHH-hhhcCccc---------cc----cccceeeeEEEEEEECCeEEEEEEEeCCCCCCCC
Q 029430 96 SDLVSLKISLLGDCQIGKTSFV-KYVGNEQE---------RS----LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF 161 (193)
Q Consensus 96 ~~~~~~KivllGd~gvGKTSLl-r~~~~~f~---------~~----~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~ 161 (193)
......||++.|.-++|||+++ +....... .+ ..|+..|+.... ++ ....+.++||.||+++.
T Consensus 6 ~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~--~~-~~~~v~LfgtPGq~RF~ 82 (187)
T COG2229 6 NKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIE--LD-EDTGVHLFGTPGQERFK 82 (187)
T ss_pred ccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceE--Ec-CcceEEEecCCCcHHHH
Confidence 3456889999999999999999 77766531 11 135566664332 22 23678899999999999
Q ss_pred cchhhhccCCcEEEEEEECCChhhH
Q 029430 162 DHVPIACKDAVAILFMFDLTSRCTL 186 (193)
Q Consensus 162 ~~~~~~~~~a~~illvyDit~~~Sf 186 (193)
-+|..+++++.+.|++.|.+...+|
T Consensus 83 fm~~~l~~ga~gaivlVDss~~~~~ 107 (187)
T COG2229 83 FMWEILSRGAVGAIVLVDSSRPITF 107 (187)
T ss_pred HHHHHHhCCcceEEEEEecCCCcch
Confidence 9999999999999999999999998
No 211
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=98.73 E-value=1.2e-08 Score=82.99 Aligned_cols=80 Identities=13% Similarity=0.189 Sum_probs=54.5
Q ss_pred EEEEECCCCCChhhHH-hhhcCccc-c--c-----------------------------cccceeeeEEEEEEECCeEEE
Q 029430 102 KISLLGDCQIGKTSFV-KYVGNEQE-R--S-----------------------------LQMAGLNLINKTLMVQGARIA 148 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~~~f~-~--~-----------------------------~~t~g~~~~~~~i~v~~~~v~ 148 (193)
+|+++|..++|||||+ +++...-. . . ...+..+.....+..+ ...
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~--~~~ 78 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTP--KRK 78 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecC--Cce
Confidence 5899999999999999 88643211 0 0 0111112222223333 357
Q ss_pred EEEEeCCCCCCCCcchhhhccCCcEEEEEEECCCh
Q 029430 149 FSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR 183 (193)
Q Consensus 149 l~iwD~~G~e~~~~~~~~~~~~a~~illvyDit~~ 183 (193)
+.+|||+|+++|.......++.+|++|+|+|.++.
T Consensus 79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~ 113 (208)
T cd04166 79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKG 113 (208)
T ss_pred EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCC
Confidence 88999999998765556678899999999999874
No 212
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=98.73 E-value=1.4e-08 Score=94.99 Aligned_cols=81 Identities=16% Similarity=0.224 Sum_probs=65.3
Q ss_pred EEEEECCCCCChhhHH-hhhc--Ccccc-------------ccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchh
Q 029430 102 KISLLGDCQIGKTSFV-KYVG--NEQER-------------SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVP 165 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~--~~f~~-------------~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~ 165 (193)
+|+++|..++|||||+ +++. +.|.. .+...|+.+..+...++...++++||||+|+++|.....
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 6899999999999999 9885 43331 122446666666655655668999999999999998888
Q ss_pred hhccCCcEEEEEEECCC
Q 029430 166 IACKDAVAILFMFDLTS 182 (193)
Q Consensus 166 ~~~~~a~~illvyDit~ 182 (193)
.+++.+|++|+|+|.++
T Consensus 83 ~~l~~aD~alLVVDa~~ 99 (594)
T TIGR01394 83 RVLGMVDGVLLLVDASE 99 (594)
T ss_pred HHHHhCCEEEEEEeCCC
Confidence 99999999999999986
No 213
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=98.71 E-value=3.1e-08 Score=80.28 Aligned_cols=46 Identities=11% Similarity=0.011 Sum_probs=36.5
Q ss_pred EEEEEEeCCCCCCCCcchhhhccCCcEEEEEEECCC----hhhHHHHHhc
Q 029430 147 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTS----RCTLNRFDHN 192 (193)
Q Consensus 147 v~l~iwD~~G~e~~~~~~~~~~~~a~~illvyDit~----~~Sf~~l~~W 192 (193)
..+.+|||+|++.|.......+..+|++|+|+|.++ ..+++.+..|
T Consensus 83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~ 132 (203)
T cd01888 83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAAL 132 (203)
T ss_pred cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHH
Confidence 678999999999887766667788899999999987 3556655443
No 214
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=98.70 E-value=7.1e-08 Score=92.64 Aligned_cols=85 Identities=20% Similarity=0.197 Sum_probs=60.8
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCccccccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcc----------hhhhc
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH----------VPIAC 168 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f~~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~----------~~~~~ 168 (193)
++||+++|.+|||||||. ++.+.+.. ..+..|..+..++..++....++++||++|...+... ...++
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~-vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l 81 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQR-VGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHH
Confidence 579999999999999999 99877654 2222333333344444455578999999999876532 22343
Q ss_pred --cCCcEEEEEEECCChhh
Q 029430 169 --KDAVAILFMFDLTSRCT 185 (193)
Q Consensus 169 --~~a~~illvyDit~~~S 185 (193)
..+|++++|+|.++.+.
T Consensus 82 ~~~~aD~vI~VvDat~ler 100 (772)
T PRK09554 82 LSGDADLLINVVDASNLER 100 (772)
T ss_pred hccCCCEEEEEecCCcchh
Confidence 47899999999998654
No 215
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=98.69 E-value=2.7e-08 Score=91.90 Aligned_cols=84 Identities=11% Similarity=0.133 Sum_probs=62.7
Q ss_pred eeEEEEECCCCCChhhHH-hhhc--Ccc-------------------ccccccceeeeEEEEEEECCeEEEEEEEeCCCC
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVG--NEQ-------------------ERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 157 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~--~~f-------------------~~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~ 157 (193)
..+|+++|..++|||||+ +++. +.- .+.....|..+......++...+.+++|||+|+
T Consensus 10 ~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG~ 89 (526)
T PRK00741 10 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPGH 89 (526)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCCc
Confidence 569999999999999999 8863 110 011112344554444445555588999999999
Q ss_pred CCCCcchhhhccCCcEEEEEEECCCh
Q 029430 158 SRSFDHVPIACKDAVAILFMFDLTSR 183 (193)
Q Consensus 158 e~~~~~~~~~~~~a~~illvyDit~~ 183 (193)
++|......+++.+|++|+|+|.++.
T Consensus 90 ~df~~~~~~~l~~aD~aIlVvDa~~g 115 (526)
T PRK00741 90 EDFSEDTYRTLTAVDSALMVIDAAKG 115 (526)
T ss_pred hhhHHHHHHHHHHCCEEEEEEecCCC
Confidence 99988777789999999999999874
No 216
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=98.69 E-value=6.1e-08 Score=87.00 Aligned_cols=82 Identities=16% Similarity=0.269 Sum_probs=57.6
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccc--------------------------------cccccceeeeEEEEEEECCe
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE--------------------------------RSLQMAGLNLINKTLMVQGA 145 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~--------------------------------~~~~t~g~~~~~~~i~v~~~ 145 (193)
..++|+++|..++|||||+ +++...-. +..+-+-.+.... .++..
T Consensus 5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~--~~~~~ 82 (425)
T PRK12317 5 PHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHK--KFETD 82 (425)
T ss_pred CEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeE--EEecC
Confidence 4789999999999999999 98732110 0011111222222 33344
Q ss_pred EEEEEEEeCCCCCCCCcchhhhccCCcEEEEEEECCC
Q 029430 146 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTS 182 (193)
Q Consensus 146 ~v~l~iwD~~G~e~~~~~~~~~~~~a~~illvyDit~ 182 (193)
.+.+.+|||+|+++|.......+..+|++|+|+|.++
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~ 119 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADD 119 (425)
T ss_pred CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEccc
Confidence 5789999999999886554455788999999999987
No 217
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.69 E-value=3.2e-08 Score=94.44 Aligned_cols=83 Identities=11% Similarity=0.105 Sum_probs=66.1
Q ss_pred eeEEEEECCCCCChhhHH-hhhcC---------------ccc-c---ccccceeeeEEEEEEECCeEEEEEEEeCCCCCC
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGN---------------EQE-R---SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 159 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~---------------~f~-~---~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~ 159 (193)
..||+++|..++|||||+ +++.. .+. + ...|+...+....+..++..+.+.+|||+|+++
T Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~~ 98 (720)
T TIGR00490 19 IRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHVD 98 (720)
T ss_pred ccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCccc
Confidence 579999999999999999 99752 222 1 223555554444455677789999999999999
Q ss_pred CCcchhhhccCCcEEEEEEECCC
Q 029430 160 SFDHVPIACKDAVAILFMFDLTS 182 (193)
Q Consensus 160 ~~~~~~~~~~~a~~illvyDit~ 182 (193)
|.......++.+|++|+|+|.++
T Consensus 99 f~~~~~~al~~aD~~llVvda~~ 121 (720)
T TIGR00490 99 FGGDVTRAMRAVDGAIVVVCAVE 121 (720)
T ss_pred cHHHHHHHHHhcCEEEEEEecCC
Confidence 98888889999999999999987
No 218
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.66 E-value=1.2e-07 Score=84.87 Aligned_cols=81 Identities=20% Similarity=0.268 Sum_probs=57.6
Q ss_pred eEEEEECCCCCChhhHH-hhhcCccc--cc-----cccceeeeEEEEE---------------EECC-eEEEEEEEeCCC
Q 029430 101 LKISLLGDCQIGKTSFV-KYVGNEQE--RS-----LQMAGLNLINKTL---------------MVQG-ARIAFSIWDVGG 156 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~~~f~--~~-----~~t~g~~~~~~~i---------------~v~~-~~v~l~iwD~~G 156 (193)
+||.++|.++||||||. ++.+.++. +| .|++|..+....+ ..++ ..+.+++||++|
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 69999999999999999 99988776 33 2334432211100 1222 237899999999
Q ss_pred C----CCCCcchhhh---ccCCcEEEEEEECC
Q 029430 157 D----SRSFDHVPIA---CKDAVAILFMFDLT 181 (193)
Q Consensus 157 ~----e~~~~~~~~~---~~~a~~illvyDit 181 (193)
. ++...+...| ++++|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 4 4555666666 88999999999997
No 219
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=98.65 E-value=7.5e-08 Score=88.21 Aligned_cols=80 Identities=14% Similarity=0.128 Sum_probs=55.3
Q ss_pred eEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCC----CCcchhh---hccCC
Q 029430 101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR----SFDHVPI---ACKDA 171 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~----~~~~~~~---~~~~a 171 (193)
.+|+|||.+++|||||+ ++.+.+.. ..+|-+..+...-.+.+++ ..+.|||++|... ...+... ++..+
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhiera 237 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIERC 237 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHhc
Confidence 47999999999999999 99887655 3333222233334555665 6789999999632 2222222 35678
Q ss_pred cEEEEEEECCC
Q 029430 172 VAILFMFDLTS 182 (193)
Q Consensus 172 ~~illvyDit~ 182 (193)
+++|+|+|+++
T Consensus 238 dvLv~VVD~s~ 248 (500)
T PRK12296 238 AVLVHVVDCAT 248 (500)
T ss_pred CEEEEEECCcc
Confidence 99999999986
No 220
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=98.63 E-value=6.8e-08 Score=89.27 Aligned_cols=85 Identities=11% Similarity=0.110 Sum_probs=64.4
Q ss_pred eeeEEEEECCCCCChhhHH-hhhc-Cccc--------------------cccccceeeeEEEEEEECCeEEEEEEEeCCC
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVG-NEQE--------------------RSLQMAGLNLINKTLMVQGARIAFSIWDVGG 156 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~-~~f~--------------------~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G 156 (193)
...+|+++|..++|||||+ +++. .... ......|+.+....+.++...+.+++|||+|
T Consensus 10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG 89 (527)
T TIGR00503 10 KRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPG 89 (527)
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCC
Confidence 3569999999999999999 8752 1111 1112345566555566666679999999999
Q ss_pred CCCCCcchhhhccCCcEEEEEEECCCh
Q 029430 157 DSRSFDHVPIACKDAVAILFMFDLTSR 183 (193)
Q Consensus 157 ~e~~~~~~~~~~~~a~~illvyDit~~ 183 (193)
++.|......+++.+|++|+|+|.++.
T Consensus 90 ~~df~~~~~~~l~~aD~aIlVvDa~~g 116 (527)
T TIGR00503 90 HEDFSEDTYRTLTAVDNCLMVIDAAKG 116 (527)
T ss_pred hhhHHHHHHHHHHhCCEEEEEEECCCC
Confidence 998887677788999999999999873
No 221
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=98.58 E-value=2e-08 Score=80.74 Aligned_cols=86 Identities=19% Similarity=0.264 Sum_probs=57.3
Q ss_pred EEEEECCCCCChhhHH-hhhcCccccccccceeeeEEEEEEE-CCeEEEEEEEeCCCCCCCCcchhh---hccCCcEEEE
Q 029430 102 KISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMV-QGARIAFSIWDVGGDSRSFDHVPI---ACKDAVAILF 176 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~~~f~~~~~t~g~~~~~~~i~v-~~~~v~l~iwD~~G~e~~~~~~~~---~~~~a~~ill 176 (193)
-|+++|++|+|||+|. ++.++.+..+..++..+. .+.+ +...-.+.+.|+.|+++.+..... +...+.++|+
T Consensus 5 ~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~n~---~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIf 81 (181)
T PF09439_consen 5 TVLLVGPSGSGKTALFSQLVNGKTVPTVTSMENNI---AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIF 81 (181)
T ss_dssp EEEEE-STTSSHHHHHHHHHHSS---B---SSEEE---ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEEE
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCcCCeeccccCCc---eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEEE
Confidence 5899999999999999 999998776656553222 2222 233457889999999998874444 4788999999
Q ss_pred EEECCC-hhhHHHHH
Q 029430 177 MFDLTS-RCTLNRFD 190 (193)
Q Consensus 177 vyDit~-~~Sf~~l~ 190 (193)
|.|.+. ...+.++.
T Consensus 82 vvDSs~~~~~~~~~A 96 (181)
T PF09439_consen 82 VVDSSTDQKELRDVA 96 (181)
T ss_dssp EEETTTHHHHHHHHH
T ss_pred EEeCccchhhHHHHH
Confidence 999974 44555443
No 222
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=98.58 E-value=2.7e-07 Score=83.00 Aligned_cols=83 Identities=23% Similarity=0.424 Sum_probs=68.3
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccc--cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchh--------hh
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVP--------IA 167 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~--~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~--------~~ 167 (193)
.-+|++++|.++||||||+ .+++.+-- ...|-+.-|+-...+.++| +.+.|.||+|-.+..+..+ ..
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~~ 293 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKKA 293 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHHH
Confidence 3689999999999999999 88877654 5666555677778889999 8888999999887665543 45
Q ss_pred ccCCcEEEEEEECCCh
Q 029430 168 CKDAVAILFMFDLTSR 183 (193)
Q Consensus 168 ~~~a~~illvyDit~~ 183 (193)
...||.+|+|+|.+..
T Consensus 294 i~~ADlvL~v~D~~~~ 309 (454)
T COG0486 294 IEEADLVLFVLDASQP 309 (454)
T ss_pred HHhCCEEEEEEeCCCC
Confidence 7899999999999984
No 223
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.54 E-value=3.1e-07 Score=79.52 Aligned_cols=83 Identities=24% Similarity=0.275 Sum_probs=53.7
Q ss_pred CceeeEEEEECCCCCChhhHH-hhhcCccc--cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhh-------
Q 029430 97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPI------- 166 (193)
Q Consensus 97 ~~~~~KivllGd~gvGKTSLl-r~~~~~f~--~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~------- 166 (193)
+...++|+++|.+||||||++ ++++.+.. ...++.+..........+| .++.++||+|..+...+...
T Consensus 35 ~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~~e~~~~~ik~ 112 (313)
T TIGR00991 35 DVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYINDQAVNIIKR 112 (313)
T ss_pred cccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEECCCCCchHHHHHHHHHHHHH
Confidence 455899999999999999999 99977642 2222222222122233455 67899999998765322221
Q ss_pred hc--cCCcEEEEEEECC
Q 029430 167 AC--KDAVAILFMFDLT 181 (193)
Q Consensus 167 ~~--~~a~~illvyDit 181 (193)
|. ...|++|+|.+++
T Consensus 113 ~l~~~g~DvVLyV~rLD 129 (313)
T TIGR00991 113 FLLGKTIDVLLYVDRLD 129 (313)
T ss_pred HhhcCCCCEEEEEeccC
Confidence 11 2589999996654
No 224
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=98.52 E-value=7e-07 Score=70.22 Aligned_cols=83 Identities=14% Similarity=0.176 Sum_probs=59.5
Q ss_pred eEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCc------chhhhc--cC
Q 029430 101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD------HVPIAC--KD 170 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~------~~~~~~--~~ 170 (193)
++|+++|.++||||||. ++.+.+.. ...|.+..+.....+.+++ ..+++.|++|--.... +...++ .+
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 58999999999999999 99998866 5566555666667777777 7788999999644332 223343 58
Q ss_pred CcEEEEEEECCChhh
Q 029430 171 AVAILFMFDLTSRCT 185 (193)
Q Consensus 171 a~~illvyDit~~~S 185 (193)
.|++|.|.|.++.+.
T Consensus 79 ~D~ii~VvDa~~l~r 93 (156)
T PF02421_consen 79 PDLIIVVVDATNLER 93 (156)
T ss_dssp SSEEEEEEEGGGHHH
T ss_pred CCEEEEECCCCCHHH
Confidence 999999999998653
No 225
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=98.50 E-value=3.2e-07 Score=86.21 Aligned_cols=84 Identities=15% Similarity=0.181 Sum_probs=60.7
Q ss_pred EEEEECCCCCChhhHH-hhhc---Cccc-cc--cccceeeeEEEEEEE-CCeEEEEEEEeCCCCCCCCcchhhhccCCcE
Q 029430 102 KISLLGDCQIGKTSFV-KYVG---NEQE-RS--LQMAGLNLINKTLMV-QGARIAFSIWDVGGDSRSFDHVPIACKDAVA 173 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~---~~f~-~~--~~t~g~~~~~~~i~v-~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~ 173 (193)
-|.++|..++|||||+ ++.+ +.+. +. ..|+...+ ..+.. ++ ..+.+||++|+++|.......+.++|+
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~--~~~~~~~g--~~i~~IDtPGhe~fi~~m~~g~~~~D~ 77 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGY--AYWPQPDG--RVLGFIDVPGHEKFLSNMLAGVGGIDH 77 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeee--EEEecCCC--cEEEEEECCCHHHHHHHHHHHhhcCCE
Confidence 4789999999999999 8875 4444 32 33444333 23333 33 347899999999986666667889999
Q ss_pred EEEEEECCC---hhhHHHH
Q 029430 174 ILFMFDLTS---RCTLNRF 189 (193)
Q Consensus 174 illvyDit~---~~Sf~~l 189 (193)
+++|+|.++ +.+.+.+
T Consensus 78 ~lLVVda~eg~~~qT~ehl 96 (614)
T PRK10512 78 ALLVVACDDGVMAQTREHL 96 (614)
T ss_pred EEEEEECCCCCcHHHHHHH
Confidence 999999987 6666654
No 226
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.49 E-value=3.7e-07 Score=81.32 Aligned_cols=92 Identities=11% Similarity=0.149 Sum_probs=61.4
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcCc-------c------c--cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCC
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGNE-------Q------E--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF 161 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~~-------f------~--~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~ 161 (193)
...++|+++|..++|||||+ ++++.. + . ..+...|.......+.++.....+.+|||+|+++|.
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f~ 89 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYV 89 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHHH
Confidence 34789999999999999999 887320 0 0 011112333333344455555788999999999876
Q ss_pred cchhhhccCCcEEEEEEECCC---hhhHHHH
Q 029430 162 DHVPIACKDAVAILFMFDLTS---RCTLNRF 189 (193)
Q Consensus 162 ~~~~~~~~~a~~illvyDit~---~~Sf~~l 189 (193)
.........+|++++|+|.++ ..+++.+
T Consensus 90 ~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l 120 (394)
T TIGR00485 90 KNMITGAAQMDGAILVVSATDGPMPQTREHI 120 (394)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCcHHHHHHH
Confidence 444444566799999999987 4554443
No 227
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=98.47 E-value=2.8e-07 Score=75.59 Aligned_cols=80 Identities=11% Similarity=0.152 Sum_probs=54.2
Q ss_pred EEEEECCCCCChhhHH-hhhcCc---------------------------cc-----cccccceeeeEEEEEEECCeEEE
Q 029430 102 KISLLGDCQIGKTSFV-KYVGNE---------------------------QE-----RSLQMAGLNLINKTLMVQGARIA 148 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~~~---------------------------f~-----~~~~t~g~~~~~~~i~v~~~~v~ 148 (193)
+|+++|..++|||||+ +++... +. +....+-.+.....+..+ ...
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~--~~~ 78 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETE--KYR 78 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeC--CeE
Confidence 4789999999999999 885320 00 001111122222333333 478
Q ss_pred EEEEeCCCCCCCCcchhhhccCCcEEEEEEECCCh
Q 029430 149 FSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR 183 (193)
Q Consensus 149 l~iwD~~G~e~~~~~~~~~~~~a~~illvyDit~~ 183 (193)
+.+||++|+..|.......++.+|++|+|+|.++.
T Consensus 79 i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~ 113 (219)
T cd01883 79 FTILDAPGHRDFVPNMITGASQADVAVLVVDARKG 113 (219)
T ss_pred EEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCC
Confidence 99999999987765555567789999999999984
No 228
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=98.47 E-value=2.2e-07 Score=83.21 Aligned_cols=92 Identities=13% Similarity=0.113 Sum_probs=60.6
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCcccccc------ccceeeeEE----------------EEEEECC------eEEEE
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSL------QMAGLNLIN----------------KTLMVQG------ARIAF 149 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~~~~------~t~g~~~~~----------------~~i~v~~------~~v~l 149 (193)
.+++|+++|..++|||||+ .+.+.....+. -|+...+.. .....++ ....+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 4789999999999999999 77543221111 122222110 0000011 13678
Q ss_pred EEEeCCCCCCCCcchhhhccCCcEEEEEEECCC----hhhHHHHH
Q 029430 150 SIWDVGGDSRSFDHVPIACKDAVAILFMFDLTS----RCTLNRFD 190 (193)
Q Consensus 150 ~iwD~~G~e~~~~~~~~~~~~a~~illvyDit~----~~Sf~~l~ 190 (193)
++||++|+++|..........+|++|+|+|.++ .++.+.+.
T Consensus 83 ~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~ 127 (406)
T TIGR03680 83 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLM 127 (406)
T ss_pred EEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHH
Confidence 999999999987777777788899999999995 44555443
No 229
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.44 E-value=2.4e-07 Score=71.87 Aligned_cols=71 Identities=25% Similarity=0.408 Sum_probs=46.4
Q ss_pred EEEEECCCCCChhhHH-hhhcCccccccccceeeeEEEEEEECCeEEEEEEEeCCCCC----CCCcchhhhccCCcEEEE
Q 029430 102 KISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS----RSFDHVPIACKDAVAILF 176 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~~~f~~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e----~~~~~~~~~~~~a~~ill 176 (193)
||+++|..|+|||||+ ++.+ +...+.-|..+++.... .||.|.= .|....-..-.+||.+++
T Consensus 3 rimliG~~g~GKTTL~q~L~~-~~~~~~KTq~i~~~~~~------------IDTPGEyiE~~~~y~aLi~ta~dad~V~l 69 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNG-EEIRYKKTQAIEYYDNT------------IDTPGEYIENPRFYHALIVTAQDADVVLL 69 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcC-CCCCcCccceeEecccE------------EECChhheeCHHHHHHHHHHHhhCCEEEE
Confidence 8999999999999999 5554 44455556655555444 4555521 122222234458889999
Q ss_pred EEECCChhh
Q 029430 177 MFDLTSRCT 185 (193)
Q Consensus 177 vyDit~~~S 185 (193)
+.|.+++.+
T Consensus 70 l~dat~~~~ 78 (143)
T PF10662_consen 70 LQDATEPRS 78 (143)
T ss_pred EecCCCCCc
Confidence 999888654
No 230
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=98.44 E-value=2.5e-07 Score=84.72 Aligned_cols=95 Identities=22% Similarity=0.416 Sum_probs=79.4
Q ss_pred CCCCCCCceeeEEEEECCCCCChhhHH-hhhcCccccccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhcc
Q 029430 91 GYDTDSDLVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACK 169 (193)
Q Consensus 91 ~~~~~~~~~~~KivllGd~gvGKTSLl-r~~~~~f~~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~ 169 (193)
.........++|+-+||+.++|||+|+ ||+.+.|.....+.|..| .+++.+++....+-+.|.+|... ..|..
T Consensus 21 ewtlsrsipelk~givg~~~sgktalvhr~ltgty~~~e~~e~~~~-kkE~vv~gqs~lLlirdeg~~~~-----aQft~ 94 (749)
T KOG0705|consen 21 EWTLSRSIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGGRF-KKEVVVDGQSHLLLIRDEGGHPD-----AQFCQ 94 (749)
T ss_pred ceeeecccchhheeeeecccCCceeeeeeeccceeccccCCcCccc-eeeEEeeccceEeeeecccCCch-----hhhhh
Confidence 444455567899999999999999999 999999996667777666 47788899999999999999332 24778
Q ss_pred CCcEEEEEEECCChhhHHHHHh
Q 029430 170 DAVAILFMFDLTSRCTLNRFDH 191 (193)
Q Consensus 170 ~a~~illvyDit~~~Sf~~l~~ 191 (193)
+.|++||||.+-+..+|+.++.
T Consensus 95 wvdavIfvf~~~d~~s~q~v~~ 116 (749)
T KOG0705|consen 95 WVDAVVFVFSVEDEQSFQAVQA 116 (749)
T ss_pred hccceEEEEEeccccCHHHHHH
Confidence 8999999999999999998763
No 231
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.41 E-value=4.1e-07 Score=81.68 Aligned_cols=93 Identities=15% Similarity=0.148 Sum_probs=57.3
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcCccc----c--ccccceeeeEEEEE----------------EEC--C----eEEE
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE----R--SLQMAGLNLINKTL----------------MVQ--G----ARIA 148 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~~f~----~--~~~t~g~~~~~~~i----------------~v~--~----~~v~ 148 (193)
...++|+++|..++|||||+ .+.+.... + ..-|+...+....+ .++ + ....
T Consensus 7 ~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (411)
T PRK04000 7 QPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRR 86 (411)
T ss_pred CCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccE
Confidence 34799999999999999999 77542111 1 11233322211111 011 1 1368
Q ss_pred EEEEeCCCCCCCCcchhhhccCCcEEEEEEECCC----hhhHHHHH
Q 029430 149 FSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTS----RCTLNRFD 190 (193)
Q Consensus 149 l~iwD~~G~e~~~~~~~~~~~~a~~illvyDit~----~~Sf~~l~ 190 (193)
+++||++|+++|....-.....+|++|+|+|.++ .++++.+.
T Consensus 87 i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~ 132 (411)
T PRK04000 87 VSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLM 132 (411)
T ss_pred EEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHH
Confidence 8999999998765433333445699999999994 55565544
No 232
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.41 E-value=5.5e-07 Score=68.79 Aligned_cols=53 Identities=23% Similarity=0.364 Sum_probs=40.9
Q ss_pred EEEEECCCCCChhhHH-hhhcCccccccccceeeeEEEEEEECCeEEEEEEEeCCCC
Q 029430 102 KISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 157 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~~~f~~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~ 157 (193)
+++++|.+|||||||+ ++.++++.....+.|.+.....+.+++ .+.||||+|-
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC---CEEEEECCCc
Confidence 8999999999999999 999887764434444445556666765 5799999984
No 233
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=98.39 E-value=7.8e-07 Score=79.43 Aligned_cols=88 Identities=16% Similarity=0.177 Sum_probs=59.1
Q ss_pred EEEEECCCCCChhhHH-hhhcCccc-cccc--cceeeeEEEEEEECCeEEEEEEEeCCCCCCCC----cchh---hhccC
Q 029430 102 KISLLGDCQIGKTSFV-KYVGNEQE-RSLQ--MAGLNLINKTLMVQGARIAFSIWDVGGDSRSF----DHVP---IACKD 170 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~~~f~-~~~~--t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~----~~~~---~~~~~ 170 (193)
.|.|||.++||||||+ .+.+.+.. ..+| |....+ -.+..++ ...+.++|++|..+-. .+.. .++..
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~--Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~r 237 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNL--GVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLER 237 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEE--EEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHh
Confidence 5899999999999999 98876654 3333 333333 2344432 2358899999975421 1222 24778
Q ss_pred CcEEEEEEECC---ChhhHHHHHhc
Q 029430 171 AVAILFMFDLT---SRCTLNRFDHN 192 (193)
Q Consensus 171 a~~illvyDit---~~~Sf~~l~~W 192 (193)
++++|+|+|++ +.+.++++..|
T Consensus 238 advlL~VVD~s~~~~~d~~e~~~~l 262 (390)
T PRK12298 238 CRVLLHLIDIAPIDGSDPVENARII 262 (390)
T ss_pred CCEEEEEeccCcccccChHHHHHHH
Confidence 99999999998 55667666555
No 234
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=98.38 E-value=5.6e-07 Score=76.52 Aligned_cols=80 Identities=15% Similarity=0.172 Sum_probs=56.4
Q ss_pred EEEEECCCCCChhhHH-hhhc--Cccc------------cccc---cceeeeE--EEEEEECCeEEEEEEEeCCCCCCCC
Q 029430 102 KISLLGDCQIGKTSFV-KYVG--NEQE------------RSLQ---MAGLNLI--NKTLMVQGARIAFSIWDVGGDSRSF 161 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~--~~f~------------~~~~---t~g~~~~--~~~i~v~~~~v~l~iwD~~G~e~~~ 161 (193)
+|.++|..++|||||+ +++. +.-. ++.+ ..|.... ...+..+ ..++.+|||+|..++.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~--~~~i~liDTPG~~df~ 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWK--DHRINIIDTPGHVDFT 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEEC--CEEEEEEECCCcHHHH
Confidence 4789999999999999 8863 2100 0001 1122222 2333334 4788999999999888
Q ss_pred cchhhhccCCcEEEEEEECCCh
Q 029430 162 DHVPIACKDAVAILFMFDLTSR 183 (193)
Q Consensus 162 ~~~~~~~~~a~~illvyDit~~ 183 (193)
.....+++.+|++|+|.|.++.
T Consensus 79 ~~~~~~l~~aD~ailVVDa~~g 100 (270)
T cd01886 79 IEVERSLRVLDGAVAVFDAVAG 100 (270)
T ss_pred HHHHHHHHHcCEEEEEEECCCC
Confidence 8888899999999999999763
No 235
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=98.37 E-value=1.6e-07 Score=74.87 Aligned_cols=84 Identities=13% Similarity=0.205 Sum_probs=59.9
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCccc-------------------cccccceeeeEEEEEEECCeEEEEEEEeCCCCCC
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQE-------------------RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 159 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f~-------------------~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~ 159 (193)
..+|+++|..++|||||+ +++...-. +....+..+.....+..+.....+.++|++|++.
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~ 82 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHED 82 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHH
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccc
Confidence 478999999999999999 88744311 0111111222223333124558899999999999
Q ss_pred CCcchhhhccCCcEEEEEEECCCh
Q 029430 160 SFDHVPIACKDAVAILFMFDLTSR 183 (193)
Q Consensus 160 ~~~~~~~~~~~a~~illvyDit~~ 183 (193)
|.......++.+|++|+|.|..+.
T Consensus 83 f~~~~~~~~~~~D~ailvVda~~g 106 (188)
T PF00009_consen 83 FIKEMIRGLRQADIAILVVDANDG 106 (188)
T ss_dssp HHHHHHHHHTTSSEEEEEEETTTB
T ss_pred eeecccceecccccceeeeecccc
Confidence 888777789999999999999853
No 236
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.35 E-value=8.3e-07 Score=84.43 Aligned_cols=85 Identities=13% Similarity=0.060 Sum_probs=61.1
Q ss_pred eeEEEEECCCCCChhhHH-hhhcC--ccc---cc--------------cccceeeeEEEEEEECCeEEEEEEEeCCCCCC
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGN--EQE---RS--------------LQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 159 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~--~f~---~~--------------~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~ 159 (193)
-.+|+++|..++|||||+ +++.. .-. .. ...+..+.....+..++ ..+.+|||+|+.+
T Consensus 10 irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~--~~i~liDTPG~~~ 87 (689)
T TIGR00484 10 FRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKG--HRINIIDTPGHVD 87 (689)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECC--eEEEEEECCCCcc
Confidence 348999999999999999 98631 110 00 11122233333444444 7889999999999
Q ss_pred CCcchhhhccCCcEEEEEEECCChhhH
Q 029430 160 SFDHVPIACKDAVAILFMFDLTSRCTL 186 (193)
Q Consensus 160 ~~~~~~~~~~~a~~illvyDit~~~Sf 186 (193)
+......+++.+|++|+|+|.++....
T Consensus 88 ~~~~~~~~l~~~D~~ilVvda~~g~~~ 114 (689)
T TIGR00484 88 FTVEVERSLRVLDGAVAVLDAVGGVQP 114 (689)
T ss_pred hhHHHHHHHHHhCEEEEEEeCCCCCCh
Confidence 888888899999999999999885444
No 237
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.30 E-value=1.4e-06 Score=70.56 Aligned_cols=83 Identities=11% Similarity=0.170 Sum_probs=58.6
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCcc------------c---cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcc
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQ------------E---RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH 163 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f------------~---~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~ 163 (193)
.++|.++|-.++|||||+ +++.... . ..+...|.........+......+.+.||+|...|...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 578999999999999999 8875310 0 00112233333333444444567889999999887666
Q ss_pred hhhhccCCcEEEEEEECCC
Q 029430 164 VPIACKDAVAILFMFDLTS 182 (193)
Q Consensus 164 ~~~~~~~a~~illvyDit~ 182 (193)
....+..+|++++|.|.+.
T Consensus 82 ~~~~~~~~D~~ilVvda~~ 100 (195)
T cd01884 82 MITGAAQMDGAILVVSATD 100 (195)
T ss_pred HHHHhhhCCEEEEEEECCC
Confidence 6667889999999999976
No 238
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.27 E-value=5.7e-06 Score=69.68 Aligned_cols=81 Identities=22% Similarity=0.233 Sum_probs=52.3
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcCccc---cccc-cceeeeEEEEEEECCeEEEEEEEeCCCCCCCCc---c------
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE---RSLQ-MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD---H------ 163 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~~f~---~~~~-t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~---~------ 163 (193)
...++|+|+|.+|||||||+ .+++.... ...+ |.. ........++ ..+.+|||.|-..... .
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~--~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~ 104 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLR--VREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKILS 104 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEE--EEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHHH
Confidence 44789999999999999999 88887643 2222 222 2222334455 6789999999765521 1
Q ss_pred -hhhhcc--CCcEEEEEEECCC
Q 029430 164 -VPIACK--DAVAILFMFDLTS 182 (193)
Q Consensus 164 -~~~~~~--~a~~illvyDit~ 182 (193)
...|+. ..+++++|..++.
T Consensus 105 ~I~~~l~~~~idvIL~V~rlD~ 126 (249)
T cd01853 105 SIKRYLKKKTPDVVLYVDRLDM 126 (249)
T ss_pred HHHHHHhccCCCEEEEEEcCCC
Confidence 112332 5688888876654
No 239
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.26 E-value=2.2e-06 Score=66.23 Aligned_cols=54 Identities=17% Similarity=0.295 Sum_probs=40.5
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCccccccccceeeeEEEEEEECCeEEEEEEEeCCC
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 156 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f~~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G 156 (193)
..+++++|.+++|||||+ ++.++....+.++.|.......+..++ .+.+|||+|
T Consensus 101 ~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~DtpG 155 (156)
T cd01859 101 EGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKITS---KIYLLDTPG 155 (156)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence 578899999999999999 988765446667777654333333433 689999998
No 240
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=98.24 E-value=9.6e-06 Score=65.12 Aligned_cols=78 Identities=18% Similarity=0.215 Sum_probs=52.7
Q ss_pred eEEEEECCCCCChhhHH-hhhcCccc--cc---cccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCc--------ch--
Q 029430 101 LKISLLGDCQIGKTSFV-KYVGNEQE--RS---LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD--------HV-- 164 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~~~f~--~~---~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~--------~~-- 164 (193)
++|+++|.+|+|||||+ .+++.+.. .. ..|.... .....+++ ..+.+.||+|-..... +.
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~--~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~ 76 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQ--KESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRC 76 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccc--eeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHH
Confidence 47999999999999999 99877543 21 1233333 33444555 5789999999655421 11
Q ss_pred -hhhccCCcEEEEEEECCC
Q 029430 165 -PIACKDAVAILFMFDLTS 182 (193)
Q Consensus 165 -~~~~~~a~~illvyDit~ 182 (193)
.....+.+++|+|.|+.+
T Consensus 77 ~~~~~~g~~~illVi~~~~ 95 (196)
T cd01852 77 LSLSAPGPHAFLLVVPLGR 95 (196)
T ss_pred HHhcCCCCEEEEEEEECCC
Confidence 112457899999999876
No 241
>PRK12735 elongation factor Tu; Reviewed
Probab=98.24 E-value=2.9e-06 Score=75.79 Aligned_cols=85 Identities=11% Similarity=0.182 Sum_probs=57.9
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcC-------ccc--------cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCC
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGN-------EQE--------RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF 161 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~-------~f~--------~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~ 161 (193)
...++|+++|..++|||||+ ++++. .+. ..+...|.........+......+.++||+|+++|.
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~ 89 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYV 89 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHH
Confidence 34789999999999999999 98852 110 111122333322333343444678899999998775
Q ss_pred cchhhhccCCcEEEEEEECCC
Q 029430 162 DHVPIACKDAVAILFMFDLTS 182 (193)
Q Consensus 162 ~~~~~~~~~a~~illvyDit~ 182 (193)
.....-...+|++++|+|.++
T Consensus 90 ~~~~~~~~~aD~~llVvda~~ 110 (396)
T PRK12735 90 KNMITGAAQMDGAILVVSAAD 110 (396)
T ss_pred HHHHhhhccCCEEEEEEECCC
Confidence 544455678899999999987
No 242
>PRK12736 elongation factor Tu; Reviewed
Probab=98.24 E-value=3.2e-06 Score=75.41 Aligned_cols=85 Identities=11% Similarity=0.143 Sum_probs=57.9
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcCc-------c-----c---cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCC
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGNE-------Q-----E---RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF 161 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~~-------f-----~---~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~ 161 (193)
...++|+++|..++|||||+ ++++.. + . +.+...|.........++.....+.++||+|+++|.
T Consensus 10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f~ 89 (394)
T PRK12736 10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADYV 89 (394)
T ss_pred CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHHH
Confidence 34789999999999999999 887521 1 0 011122333333334444445678899999998876
Q ss_pred cchhhhccCCcEEEEEEECCC
Q 029430 162 DHVPIACKDAVAILFMFDLTS 182 (193)
Q Consensus 162 ~~~~~~~~~a~~illvyDit~ 182 (193)
.....-...+|++|+|+|.++
T Consensus 90 ~~~~~~~~~~d~~llVvd~~~ 110 (394)
T PRK12736 90 KNMITGAAQMDGAILVVAATD 110 (394)
T ss_pred HHHHHHHhhCCEEEEEEECCC
Confidence 544445677899999999986
No 243
>COG1160 Predicted GTPases [General function prediction only]
Probab=98.23 E-value=4e-06 Score=75.42 Aligned_cols=80 Identities=23% Similarity=0.304 Sum_probs=60.4
Q ss_pred eEEEEECCCCCChhhHH-hhhcCccc--cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCC-c--------chhhhc
Q 029430 101 LKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF-D--------HVPIAC 168 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~~~f~--~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~-~--------~~~~~~ 168 (193)
..|+++|-++||||||. |+++.+.- +..|-+.-|-......+.+. .+.+.||+|-+.-. + .....+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~--~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai 81 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGR--EFILIDTGGLDDGDEDELQELIREQALIAI 81 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCc--eEEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence 46999999999999999 99998876 55554434444466677774 48999999988543 1 123457
Q ss_pred cCCcEEEEEEECCC
Q 029430 169 KDAVAILFMFDLTS 182 (193)
Q Consensus 169 ~~a~~illvyDit~ 182 (193)
..||++|||+|.-.
T Consensus 82 ~eADvilfvVD~~~ 95 (444)
T COG1160 82 EEADVILFVVDGRE 95 (444)
T ss_pred HhCCEEEEEEeCCC
Confidence 78999999999876
No 244
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.22 E-value=6.2e-06 Score=71.60 Aligned_cols=84 Identities=18% Similarity=0.288 Sum_probs=60.7
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCC----CC---cchhhhccC
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR----SF---DHVPIACKD 170 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~----~~---~~~~~~~~~ 170 (193)
--.++|+|.++||||||+ ++.+-+.. ..++-+..+...-.++++| ..+||.|+.|--. -. ...-...++
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~R~ 140 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVARN 140 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeeeecc
Confidence 357999999999999999 88877766 4445332444455667777 8889999986422 11 122345789
Q ss_pred CcEEEEEEECCChhh
Q 029430 171 AVAILFMFDLTSRCT 185 (193)
Q Consensus 171 a~~illvyDit~~~S 185 (193)
||.+++|.|+....+
T Consensus 141 ADlIiiVld~~~~~~ 155 (365)
T COG1163 141 ADLIIIVLDVFEDPH 155 (365)
T ss_pred CCEEEEEEecCCChh
Confidence 999999999997665
No 245
>PLN03126 Elongation factor Tu; Provisional
Probab=98.20 E-value=3.1e-06 Score=77.47 Aligned_cols=87 Identities=10% Similarity=0.148 Sum_probs=59.4
Q ss_pred CceeeEEEEECCCCCChhhHH-hhhcC------ccc---------cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCC
Q 029430 97 DLVSLKISLLGDCQIGKTSFV-KYVGN------EQE---------RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS 160 (193)
Q Consensus 97 ~~~~~KivllGd~gvGKTSLl-r~~~~------~f~---------~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~ 160 (193)
....++|+++|..++|||||+ +++.. ... ..+...|.........++.+...+.++|++|+++|
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f 157 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 157 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence 345789999999999999999 99851 111 11112233322222233333467889999999998
Q ss_pred CcchhhhccCCcEEEEEEECCCh
Q 029430 161 FDHVPIACKDAVAILFMFDLTSR 183 (193)
Q Consensus 161 ~~~~~~~~~~a~~illvyDit~~ 183 (193)
......-...+|++|+|+|.++-
T Consensus 158 ~~~~~~g~~~aD~ailVVda~~G 180 (478)
T PLN03126 158 VKNMITGAAQMDGAILVVSGADG 180 (478)
T ss_pred HHHHHHHHhhCCEEEEEEECCCC
Confidence 66555567789999999998753
No 246
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=98.19 E-value=2.3e-06 Score=70.77 Aligned_cols=80 Identities=10% Similarity=0.201 Sum_probs=52.3
Q ss_pred EEEEECCCCCChhhHH-hhhcCcccc-cc-c----------------------cceeeeEE---------------EEEE
Q 029430 102 KISLLGDCQIGKTSFV-KYVGNEQER-SL-Q----------------------MAGLNLIN---------------KTLM 141 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~~~f~~-~~-~----------------------t~g~~~~~---------------~~i~ 141 (193)
||+++|+.++|||||+ +|..+.|.. .. . .+|.+... ..+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 6899999999999999 999877751 10 0 11111100 1111
Q ss_pred ECCeEEEEEEEeCCCCCCCCcchhhhc--cCCcEEEEEEECCCh
Q 029430 142 VQGARIAFSIWDVGGDSRSFDHVPIAC--KDAVAILFMFDLTSR 183 (193)
Q Consensus 142 v~~~~v~l~iwD~~G~e~~~~~~~~~~--~~a~~illvyDit~~ 183 (193)
.+ ...+.+.|++|+++|.......+ ..+|++++|.|....
T Consensus 81 ~~--~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g 122 (224)
T cd04165 81 KS--SKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAG 122 (224)
T ss_pred eC--CcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCC
Confidence 11 25788999999998754433333 368999999998653
No 247
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=98.18 E-value=6e-06 Score=71.71 Aligned_cols=38 Identities=26% Similarity=0.486 Sum_probs=35.3
Q ss_pred EEEEEEEeCCCCCCCCcchhhhccCCcEEEEEEECCCh
Q 029430 146 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR 183 (193)
Q Consensus 146 ~v~l~iwD~~G~e~~~~~~~~~~~~a~~illvyDit~~ 183 (193)
.+.+.+||++||...+..|..|+.+++++|+|.|+++-
T Consensus 160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~ 197 (317)
T cd00066 160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEY 197 (317)
T ss_pred ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhc
Confidence 47889999999999999999999999999999999973
No 248
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.18 E-value=3.8e-06 Score=66.21 Aligned_cols=56 Identities=13% Similarity=0.232 Sum_probs=40.9
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccccccccceeeeEEEEEEECCeEEEEEEEeCCCC
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 157 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~ 157 (193)
..++++++|.++||||||+ ++.+..+....+..+.......+.++ ..+.++||+|-
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 3579999999999999999 99988775444433444444445554 35789999983
No 249
>PLN00043 elongation factor 1-alpha; Provisional
Probab=98.18 E-value=2.6e-06 Score=77.32 Aligned_cols=85 Identities=13% Similarity=0.187 Sum_probs=61.2
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcCcc---------------------------cc---ccccceeeeEEEEEEECCeE
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQ---------------------------ER---SLQMAGLNLINKTLMVQGAR 146 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~~f---------------------------~~---~~~t~g~~~~~~~i~v~~~~ 146 (193)
...++|+++|..+.|||||+ +++..-- .+ .+...|..+......+....
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~ 84 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK 84 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence 34789999999999999999 8874210 00 00111222222223344455
Q ss_pred EEEEEEeCCCCCCCCcchhhhccCCcEEEEEEECCC
Q 029430 147 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTS 182 (193)
Q Consensus 147 v~l~iwD~~G~e~~~~~~~~~~~~a~~illvyDit~ 182 (193)
..+++.|++|+++|.......+..+|++|+|+|.++
T Consensus 85 ~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~ 120 (447)
T PLN00043 85 YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT 120 (447)
T ss_pred EEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEccc
Confidence 789999999999998888888999999999999987
No 250
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=98.17 E-value=5.6e-06 Score=75.10 Aligned_cols=79 Identities=22% Similarity=0.340 Sum_probs=59.7
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCccc--cccccceeeeEEEEEEECCeEEEEEEEeCCCCCC-CCcc--------hhhh
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR-SFDH--------VPIA 167 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f~--~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~-~~~~--------~~~~ 167 (193)
.++|+++|.++||||||+ .+.+++-. ...+-+.-|.-...++++| +.+.+.||+|-.+ ..+. ...-
T Consensus 268 gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G--~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~ 345 (531)
T KOG1191|consen 268 GLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNG--VPVRLSDTAGIREESNDGIEALGIERARKR 345 (531)
T ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCC--eEEEEEeccccccccCChhHHHhHHHHHHH
Confidence 489999999999999999 88888766 4445333455556777888 7778999999655 2221 1334
Q ss_pred ccCCcEEEEEEEC
Q 029430 168 CKDAVAILFMFDL 180 (193)
Q Consensus 168 ~~~a~~illvyDi 180 (193)
.+.+|++++|+|.
T Consensus 346 ~~~advi~~vvda 358 (531)
T KOG1191|consen 346 IERADVILLVVDA 358 (531)
T ss_pred HhhcCEEEEEecc
Confidence 6789999999998
No 251
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=98.11 E-value=3.8e-06 Score=75.29 Aligned_cols=80 Identities=13% Similarity=0.282 Sum_probs=54.1
Q ss_pred eEEEEECCCCCChhhHH-hhhcCccc--c---------------------------c---cccce--eeeEEEEEEECCe
Q 029430 101 LKISLLGDCQIGKTSFV-KYVGNEQE--R---------------------------S---LQMAG--LNLINKTLMVQGA 145 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~~~f~--~---------------------------~---~~t~g--~~~~~~~i~v~~~ 145 (193)
++|+++|..++|||||+ +++...-. . . +...| .+.....+..+
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~-- 78 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTD-- 78 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccC--
Confidence 58999999999999999 88633211 0 0 00011 22222223333
Q ss_pred EEEEEEEeCCCCCCCCcchhhhccCCcEEEEEEECCC
Q 029430 146 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTS 182 (193)
Q Consensus 146 ~v~l~iwD~~G~e~~~~~~~~~~~~a~~illvyDit~ 182 (193)
..++.++||+|+++|......-+..+|++|+|+|...
T Consensus 79 ~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~ 115 (406)
T TIGR02034 79 KRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARK 115 (406)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCC
Confidence 3578899999999886555556789999999999865
No 252
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.10 E-value=1.2e-06 Score=73.03 Aligned_cols=82 Identities=18% Similarity=0.384 Sum_probs=55.0
Q ss_pred eeEEEEECCCCCChhhHH--hhhcC-ccc--cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCC-----Ccchhhhcc
Q 029430 100 SLKISLLGDCQIGKTSFV--KYVGN-EQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS-----FDHVPIACK 169 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl--r~~~~-~f~--~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~-----~~~~~~~~~ 169 (193)
.-||+++|.+|+||||+- .|.+- .++ ...+|+.++-.... .++ .+.+++||.+|||.+ ......-++
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~R-flG--nl~LnlwDcGgqe~fmen~~~~q~d~iF~ 80 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVR-FLG--NLVLNLWDCGGQEEFMENYLSSQEDNIFR 80 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhh-hhh--hheeehhccCCcHHHHHHHHhhcchhhhe
Confidence 459999999999999998 33222 112 22334443322111 122 278999999999952 234556788
Q ss_pred CCcEEEEEEECCChh
Q 029430 170 DAVAILFMFDLTSRC 184 (193)
Q Consensus 170 ~a~~illvyDit~~~ 184 (193)
+.++.++|||+.+++
T Consensus 81 nV~vli~vFDves~e 95 (295)
T KOG3886|consen 81 NVQVLIYVFDVESRE 95 (295)
T ss_pred eheeeeeeeeccchh
Confidence 999999999999884
No 253
>PRK12740 elongation factor G; Reviewed
Probab=98.10 E-value=5e-06 Score=78.76 Aligned_cols=83 Identities=12% Similarity=0.039 Sum_probs=57.6
Q ss_pred ECCCCCChhhHH-hhhcCccc--------------c-----ccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchh
Q 029430 106 LGDCQIGKTSFV-KYVGNEQE--------------R-----SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVP 165 (193)
Q Consensus 106 lGd~gvGKTSLl-r~~~~~f~--------------~-----~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~ 165 (193)
+|..++|||||+ +++...-. + ....+.++.....+..++ +.+.+|||+|+.++.....
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~ 78 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKG--HKINLIDTPGHVDFTGEVE 78 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECC--EEEEEEECCCcHHHHHHHH
Confidence 589999999999 98532110 0 011111222223344444 8899999999998877788
Q ss_pred hhccCCcEEEEEEECCChhhHHHHH
Q 029430 166 IACKDAVAILFMFDLTSRCTLNRFD 190 (193)
Q Consensus 166 ~~~~~a~~illvyDit~~~Sf~~l~ 190 (193)
.+++.+|++|+|+|.++..++....
T Consensus 79 ~~l~~aD~vllvvd~~~~~~~~~~~ 103 (668)
T PRK12740 79 RALRVLDGAVVVVCAVGGVEPQTET 103 (668)
T ss_pred HHHHHhCeEEEEEeCCCCcCHHHHH
Confidence 8899999999999999876655543
No 254
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.09 E-value=7.2e-06 Score=74.97 Aligned_cols=83 Identities=12% Similarity=0.238 Sum_probs=55.9
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcCccc--c------------ccc------------------cce--eeeEEEEEEE
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE--R------------SLQ------------------MAG--LNLINKTLMV 142 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~~f~--~------------~~~------------------t~g--~~~~~~~i~v 142 (193)
...+||+++|..++|||||+ +++...-. . ... ..| ++.....+
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~-- 102 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF-- 102 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEe--
Confidence 34699999999999999999 88744211 1 000 011 12222222
Q ss_pred CCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEEEECCC
Q 029430 143 QGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTS 182 (193)
Q Consensus 143 ~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illvyDit~ 182 (193)
......+.++||+|+++|......-+..+|++|+|+|.+.
T Consensus 103 ~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~ 142 (474)
T PRK05124 103 STEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARK 142 (474)
T ss_pred ccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCC
Confidence 2334678899999998886544445789999999999865
No 255
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.08 E-value=1.3e-05 Score=68.69 Aligned_cols=59 Identities=19% Similarity=0.358 Sum_probs=40.4
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccc-cc----------cccceeeeEEEEEEECCeEEEEEEEeCCCC
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RS----------LQMAGLNLINKTLMVQGARIAFSIWDVGGD 157 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~-~~----------~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~ 157 (193)
..++|+|+|++|+|||||+ .+.+.... .. ..+..+......+.-++..+.+.|+||.|-
T Consensus 3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGf 73 (281)
T PF00735_consen 3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGF 73 (281)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-C
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCc
Confidence 3789999999999999999 88776554 21 112333433344555788899999999984
No 256
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=98.08 E-value=2.4e-05 Score=67.60 Aligned_cols=86 Identities=15% Similarity=0.293 Sum_probs=58.1
Q ss_pred CCCceeeEEEEECCCCCChhhHH-hhhcCccc---cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcch------
Q 029430 95 DSDLVSLKISLLGDCQIGKTSFV-KYVGNEQE---RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHV------ 164 (193)
Q Consensus 95 ~~~~~~~KivllGd~gvGKTSLl-r~~~~~f~---~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~------ 164 (193)
......+.|+++|.++||||+|. ++++.... ....|+-.+. .-.+ -..+..+.++||.|--.-...+
T Consensus 67 ~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~i-lgi~--ts~eTQlvf~DTPGlvs~~~~r~~~l~~ 143 (379)
T KOG1423|consen 67 EEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRI-LGII--TSGETQLVFYDTPGLVSKKMHRRHHLMM 143 (379)
T ss_pred hhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeee-eEEE--ecCceEEEEecCCcccccchhhhHHHHH
Confidence 55567899999999999999999 99988765 2222332222 1222 2344788999999853321111
Q ss_pred ------hhhccCCcEEEEEEECCCh
Q 029430 165 ------PIACKDAVAILFMFDLTSR 183 (193)
Q Consensus 165 ------~~~~~~a~~illvyDit~~ 183 (193)
......||++++|+|.++.
T Consensus 144 s~lq~~~~a~q~AD~vvVv~Das~t 168 (379)
T KOG1423|consen 144 SVLQNPRDAAQNADCVVVVVDASAT 168 (379)
T ss_pred HhhhCHHHHHhhCCEEEEEEeccCC
Confidence 1235679999999999963
No 257
>COG1160 Predicted GTPases [General function prediction only]
Probab=98.07 E-value=2e-05 Score=70.95 Aligned_cols=88 Identities=20% Similarity=0.295 Sum_probs=64.0
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccc--cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcc----------h-
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH----------V- 164 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~--~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~----------~- 164 (193)
..+||+++|-++||||||+ ++++.+-. ...+-+..|.-...++.+++ ++.+.||+|-.+-..+ .
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~--~~~liDTAGiRrk~ki~e~~E~~Sv~rt 254 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGR--KYVLIDTAGIRRKGKITESVEKYSVART 254 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCe--EEEEEECCCCCcccccccceEEEeehhh
Confidence 4699999999999999999 99888765 45554445555667777784 5669999996542222 2
Q ss_pred hhhccCCcEEEEEEECCChhhHHH
Q 029430 165 PIACKDAVAILFMFDLTSRCTLNR 188 (193)
Q Consensus 165 ~~~~~~a~~illvyDit~~~Sf~~ 188 (193)
......++++++|.|.+..-+-++
T Consensus 255 ~~aI~~a~vvllviDa~~~~~~qD 278 (444)
T COG1160 255 LKAIERADVVLLVIDATEGISEQD 278 (444)
T ss_pred HhHHhhcCEEEEEEECCCCchHHH
Confidence 124567999999999998655443
No 258
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=98.06 E-value=1.2e-05 Score=73.41 Aligned_cols=92 Identities=17% Similarity=0.313 Sum_probs=67.9
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCccccccccceeeeEEEEEEEC--CeEEEEEEEeCCCCCCCCcchhhhccCC----c
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQ--GARIAFSIWDVGGDSRSFDHVPIACKDA----V 172 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f~~~~~t~g~~~~~~~i~v~--~~~v~l~iwD~~G~e~~~~~~~~~~~~a----~ 172 (193)
+-.|+|+|+.++|||+|+ +|.+.+ ++.++.|.+|..-.+.-+ +....+.+|...|...+..+.+..+... -
T Consensus 25 ~k~vlvlG~~~~GKttli~~L~~~e--~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t 102 (472)
T PF05783_consen 25 EKSVLVLGDKGSGKTTLIARLQGIE--DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPNT 102 (472)
T ss_pred CceEEEEeCCCCchHHHHHHhhccC--CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccce
Confidence 568999999999999999 986543 445677877754444322 2236799999998777777776555432 4
Q ss_pred EEEEEEECCChhhHH-HHHhcC
Q 029430 173 AILFMFDLTSRCTLN-RFDHNQ 193 (193)
Q Consensus 173 ~illvyDit~~~Sf~-~l~~W~ 193 (193)
.+|||.|++.+.++- .+++|+
T Consensus 103 ~vvIvlDlS~PW~~~esL~~W~ 124 (472)
T PF05783_consen 103 LVVIVLDLSKPWNIMESLEKWL 124 (472)
T ss_pred EEEEEecCCChHHHHHHHHHHH
Confidence 889999999998665 688885
No 259
>COG3596 Predicted GTPase [General function prediction only]
Probab=98.05 E-value=3.5e-06 Score=71.69 Aligned_cols=85 Identities=15% Similarity=0.204 Sum_probs=58.2
Q ss_pred CceeeEEEEECCCCCChhhHH-hhhcCcccc---ccccceeeeEEEEEEECCeEEEEEEEeCCCCCC-------CCcchh
Q 029430 97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQER---SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR-------SFDHVP 165 (193)
Q Consensus 97 ~~~~~KivllGd~gvGKTSLl-r~~~~~f~~---~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~-------~~~~~~ 165 (193)
....++++++|..|+|||||+ .+..++..+ ...+.....+. ...+++ -.+.|||+.|-++ |++...
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~-~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~ 112 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRL-RLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYR 112 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhH-Hhhccc--cceEEecCCCcccchhhhHHHHHHHH
Confidence 445789999999999999999 777655441 11122222111 123344 4688999998776 556667
Q ss_pred hhccCCcEEEEEEECCChh
Q 029430 166 IACKDAVAILFMFDLTSRC 184 (193)
Q Consensus 166 ~~~~~a~~illvyDit~~~ 184 (193)
.++...|.++.+-|..|+.
T Consensus 113 d~l~~~DLvL~l~~~~dra 131 (296)
T COG3596 113 DYLPKLDLVLWLIKADDRA 131 (296)
T ss_pred HHhhhccEEEEeccCCCcc
Confidence 7888999888888887763
No 260
>CHL00071 tufA elongation factor Tu
Probab=98.04 E-value=1.1e-05 Score=72.36 Aligned_cols=85 Identities=9% Similarity=0.157 Sum_probs=57.6
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcCcc-------------c--cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCC
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQ-------------E--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF 161 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~~f-------------~--~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~ 161 (193)
...++|+++|..++|||||+ ++++..- + +.+...|.........+..+...+.+.||+|+++|.
T Consensus 10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~~ 89 (409)
T CHL00071 10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYV 89 (409)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHHH
Confidence 44799999999999999999 9885311 0 011112222222223333344677899999988776
Q ss_pred cchhhhccCCcEEEEEEECCC
Q 029430 162 DHVPIACKDAVAILFMFDLTS 182 (193)
Q Consensus 162 ~~~~~~~~~a~~illvyDit~ 182 (193)
......+..+|++++|.|...
T Consensus 90 ~~~~~~~~~~D~~ilVvda~~ 110 (409)
T CHL00071 90 KNMITGAAQMDGAILVVSAAD 110 (409)
T ss_pred HHHHHHHHhCCEEEEEEECCC
Confidence 555566788999999999875
No 261
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.01 E-value=4.1e-05 Score=62.56 Aligned_cols=79 Identities=23% Similarity=0.210 Sum_probs=47.9
Q ss_pred eEEEEECCCCCChhhHH-hhhcCccc-cc--cccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCc--------chh---
Q 029430 101 LKISLLGDCQIGKTSFV-KYVGNEQE-RS--LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD--------HVP--- 165 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~~~f~-~~--~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~--------~~~--- 165 (193)
++|+|+|..|+||||++ .+++.... .. ..+....+......++| ..+.++||.|--.... +..
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 58999999999999999 88877654 22 11222233334457788 5678999998433221 111
Q ss_pred hhccCCcEEEEEEECC
Q 029430 166 IACKDAVAILFMFDLT 181 (193)
Q Consensus 166 ~~~~~a~~illvyDit 181 (193)
....+.++||||.++.
T Consensus 79 ~~~~g~ha~llVi~~~ 94 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLG 94 (212)
T ss_dssp HTTT-ESEEEEEEETT
T ss_pred hccCCCeEEEEEEecC
Confidence 1245689999999987
No 262
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.98 E-value=6.6e-06 Score=67.62 Aligned_cols=76 Identities=24% Similarity=0.279 Sum_probs=59.3
Q ss_pred EEEEECCCCCChhhHH-hhhcCccccccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhcc---CCcEEEEE
Q 029430 102 KISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACK---DAVAILFM 177 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~~~f~~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~---~a~~illv 177 (193)
-|+++|.+++|||+|. ++.++.+....+++..+.. +..+++.. .++.|..|+++.+.-...|++ .+-++|||
T Consensus 40 ~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiepn~a--~~r~gs~~--~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFV 115 (238)
T KOG0090|consen 40 AVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEPNEA--TYRLGSEN--VTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFV 115 (238)
T ss_pred cEEEEecCCCCceeeeeehhcCCccCeeeeecccee--eEeecCcc--eEEEeCCCcHHHHHHHHHHccccccceeEEEE
Confidence 5899999999999999 9999987766666655543 33444433 789999999997776666666 68899999
Q ss_pred EECC
Q 029430 178 FDLT 181 (193)
Q Consensus 178 yDit 181 (193)
.|.+
T Consensus 116 VDSa 119 (238)
T KOG0090|consen 116 VDSA 119 (238)
T ss_pred Eecc
Confidence 9864
No 263
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=97.98 E-value=1.7e-05 Score=69.08 Aligned_cols=92 Identities=18% Similarity=0.285 Sum_probs=65.8
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCccccccccceeeeEEEEEEEC--CeEEEEEEEeCCCCCCCCcchhhhccCC----c
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQ--GARIAFSIWDVGGDSRSFDHVPIACKDA----V 172 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f~~~~~t~g~~~~~~~i~v~--~~~v~l~iwD~~G~e~~~~~~~~~~~~a----~ 172 (193)
.-.|+++||.|+|||||+ ++.+-+ .+..-.|.++....+.-+ +...++.+|-..|.-....+....+... .
T Consensus 52 gk~VlvlGdn~sGKtsLi~klqg~e--~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aet 129 (473)
T KOG3905|consen 52 GKNVLVLGDNGSGKTSLISKLQGSE--TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAET 129 (473)
T ss_pred CCeEEEEccCCCchhHHHHHhhccc--ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccce
Confidence 457999999999999999 887765 344455666643333222 2347889999999887777666555433 3
Q ss_pred EEEEEEECCChh-hHHHHHhcC
Q 029430 173 AILFMFDLTSRC-TLNRFDHNQ 193 (193)
Q Consensus 173 ~illvyDit~~~-Sf~~l~~W~ 193 (193)
.+|++.|++++. -++.+++|.
T Consensus 130 lviltasms~Pw~~lesLqkWa 151 (473)
T KOG3905|consen 130 LVILTASMSNPWTLLESLQKWA 151 (473)
T ss_pred EEEEEEecCCcHHHHHHHHHHH
Confidence 688899999994 567799983
No 264
>PTZ00258 GTP-binding protein; Provisional
Probab=97.97 E-value=2.8e-05 Score=69.44 Aligned_cols=84 Identities=13% Similarity=0.152 Sum_probs=55.7
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeE---------------EEEEEEeCCCCCCC
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGAR---------------IAFSIWDVGGDSRS 160 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~---------------v~l~iwD~~G~e~~ 160 (193)
...+||.++|.++||||||. .+.+.... ..+|-...+...-.+.+.+.+ ..+++.|++|-..-
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 34679999999999999999 88666554 444533333333445544332 35899999995431
Q ss_pred ----Ccchhh---hccCCcEEEEEEECC
Q 029430 161 ----FDHVPI---ACKDAVAILFMFDLT 181 (193)
Q Consensus 161 ----~~~~~~---~~~~a~~illvyDit 181 (193)
..+... .++.+|++++|.|..
T Consensus 99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 122222 356799999999974
No 265
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.96 E-value=3.9e-05 Score=70.87 Aligned_cols=92 Identities=11% Similarity=0.195 Sum_probs=73.0
Q ss_pred CceeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEE
Q 029430 97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 174 (193)
Q Consensus 97 ~~~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~i 174 (193)
+..-++..++|..++|||.|+ .|+++.+. ++..+....+....+.+.|+.-.+.+-|..-. ....+...- ..+|++
T Consensus 422 ~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~ 499 (625)
T KOG1707|consen 422 DRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVA 499 (625)
T ss_pred cceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeE
Confidence 345678999999999999999 99999888 66667777777777777888888888888865 333333222 667999
Q ss_pred EEEEECCChhhHHHHH
Q 029430 175 LFMFDLTSRCTLNRFD 190 (193)
Q Consensus 175 llvyDit~~~Sf~~l~ 190 (193)
.++||++++.||+-+.
T Consensus 500 ~~~YDsS~p~sf~~~a 515 (625)
T KOG1707|consen 500 CLVYDSSNPRSFEYLA 515 (625)
T ss_pred EEecccCCchHHHHHH
Confidence 9999999999998764
No 266
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=97.95 E-value=2.3e-05 Score=71.20 Aligned_cols=85 Identities=12% Similarity=0.198 Sum_probs=58.7
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcC--ccc-------------------------cc---cccceeeeEEEEEEECCeE
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGN--EQE-------------------------RS---LQMAGLNLINKTLMVQGAR 146 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~--~f~-------------------------~~---~~t~g~~~~~~~i~v~~~~ 146 (193)
...++|+++|..++|||||+ +++.. ... +. +...|.........+....
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~ 84 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence 34789999999999999999 88751 100 00 0011222222222333445
Q ss_pred EEEEEEeCCCCCCCCcchhhhccCCcEEEEEEECCC
Q 029430 147 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTS 182 (193)
Q Consensus 147 v~l~iwD~~G~e~~~~~~~~~~~~a~~illvyDit~ 182 (193)
..+.|.|++|+++|......-...+|++|+|.|.++
T Consensus 85 ~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~ 120 (446)
T PTZ00141 85 YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTA 120 (446)
T ss_pred eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCC
Confidence 789999999999987666667889999999999876
No 267
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=97.92 E-value=1.4e-05 Score=68.22 Aligned_cols=79 Identities=14% Similarity=0.144 Sum_probs=52.7
Q ss_pred EEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeE---------------EEEEEEeCCCCCCC----C
Q 029430 103 ISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGAR---------------IAFSIWDVGGDSRS----F 161 (193)
Q Consensus 103 ivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~---------------v~l~iwD~~G~e~~----~ 161 (193)
+.++|.++||||||. .+.+.+.. ..+|....+.....+.+.+.+ ..+++.|++|--+- .
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 468999999999999 88887765 444533333333455555432 35899999995431 1
Q ss_pred cchhhh---ccCCcEEEEEEECC
Q 029430 162 DHVPIA---CKDAVAILFMFDLT 181 (193)
Q Consensus 162 ~~~~~~---~~~a~~illvyDit 181 (193)
.+...| ++.+|+++.|.|..
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 222233 56799999999874
No 268
>PRK00049 elongation factor Tu; Reviewed
Probab=97.91 E-value=2.9e-05 Score=69.38 Aligned_cols=85 Identities=8% Similarity=0.155 Sum_probs=58.1
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcCccc---------------cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCC
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE---------------RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF 161 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~~f~---------------~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~ 161 (193)
...++|+++|..++|||||+ ++++.... +.+...|.......+.+......+.+.||+|+++|.
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~ 89 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYV 89 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHH
Confidence 34789999999999999999 98862110 001122322222333343344677899999998776
Q ss_pred cchhhhccCCcEEEEEEECCC
Q 029430 162 DHVPIACKDAVAILFMFDLTS 182 (193)
Q Consensus 162 ~~~~~~~~~a~~illvyDit~ 182 (193)
.........+|++++|.|.++
T Consensus 90 ~~~~~~~~~aD~~llVVDa~~ 110 (396)
T PRK00049 90 KNMITGAAQMDGAILVVSAAD 110 (396)
T ss_pred HHHHhhhccCCEEEEEEECCC
Confidence 555566788999999999876
No 269
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=97.90 E-value=7.1e-05 Score=66.32 Aligned_cols=81 Identities=15% Similarity=0.181 Sum_probs=54.2
Q ss_pred eEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeE---------------EEEEEEeCCCCCCCC--
Q 029430 101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGAR---------------IAFSIWDVGGDSRSF-- 161 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~---------------v~l~iwD~~G~e~~~-- 161 (193)
+||.++|.++||||||. .+.+.+.. ..+|....+...-.+.+.+.. ..+++.|++|-..-.
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 79999999999999999 88887744 344422223333344444422 358999999954311
Q ss_pred --cchhh---hccCCcEEEEEEECC
Q 029430 162 --DHVPI---ACKDAVAILFMFDLT 181 (193)
Q Consensus 162 --~~~~~---~~~~a~~illvyDit 181 (193)
.+... .++.+|++++|.|..
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 12222 357899999999985
No 270
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=97.89 E-value=2.3e-05 Score=74.01 Aligned_cols=82 Identities=12% Similarity=0.229 Sum_probs=54.1
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccc-c-c-----------ccc-------------------ce--eeeEEEEEEEC
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-R-S-----------LQM-------------------AG--LNLINKTLMVQ 143 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~-~-~-----------~~t-------------------~g--~~~~~~~i~v~ 143 (193)
..++|+++|..++|||||+ +++...-. . . .-+ .| .+.....+..+
T Consensus 23 ~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~ 102 (632)
T PRK05506 23 SLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATP 102 (632)
T ss_pred CeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccC
Confidence 3578999999999999999 88854311 0 0 000 01 11111222223
Q ss_pred CeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEEEECCC
Q 029430 144 GARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTS 182 (193)
Q Consensus 144 ~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illvyDit~ 182 (193)
...+.++||+|+++|..........+|++|+|+|.++
T Consensus 103 --~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~ 139 (632)
T PRK05506 103 --KRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARK 139 (632)
T ss_pred --CceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCC
Confidence 3567899999998875444445788999999999865
No 271
>PRK12739 elongation factor G; Reviewed
Probab=97.88 E-value=2.5e-05 Score=74.52 Aligned_cols=82 Identities=16% Similarity=0.132 Sum_probs=59.6
Q ss_pred eeEEEEECCCCCChhhHH-hhhcC--c---c---c-----------cccccceeeeEEEEEEECCeEEEEEEEeCCCCCC
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGN--E---Q---E-----------RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 159 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~--~---f---~-----------~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~ 159 (193)
-.+|.++|..++|||||+ +++.. . . . +....+..+.....+..++ ..+.++||+|+.+
T Consensus 8 irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~~~ 85 (691)
T PRK12739 8 TRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKG--HRINIIDTPGHVD 85 (691)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECC--EEEEEEcCCCHHH
Confidence 568999999999999999 98642 1 0 0 0112222333334445555 6789999999988
Q ss_pred CCcchhhhccCCcEEEEEEECCCh
Q 029430 160 SFDHVPIACKDAVAILFMFDLTSR 183 (193)
Q Consensus 160 ~~~~~~~~~~~a~~illvyDit~~ 183 (193)
|.......++.+|++|+|.|.++.
T Consensus 86 f~~e~~~al~~~D~~ilVvDa~~g 109 (691)
T PRK12739 86 FTIEVERSLRVLDGAVAVFDAVSG 109 (691)
T ss_pred HHHHHHHHHHHhCeEEEEEeCCCC
Confidence 877778889999999999998764
No 272
>COG1159 Era GTPase [General function prediction only]
Probab=97.86 E-value=0.00011 Score=63.09 Aligned_cols=82 Identities=18% Similarity=0.269 Sum_probs=58.1
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcCccc--cccc-cceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcc--------hh
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQ-MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH--------VP 165 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~~f~--~~~~-t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~--------~~ 165 (193)
...--|.++|.++||||||+ ++++.... ...+ |+--.+ +.+...+ ...+.+.||.|-.+-... ..
T Consensus 4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I--~GI~t~~-~~QiIfvDTPGih~pk~~l~~~m~~~a~ 80 (298)
T COG1159 4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRI--RGIVTTD-NAQIIFVDTPGIHKPKHALGELMNKAAR 80 (298)
T ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhhe--eEEEEcC-CceEEEEeCCCCCCcchHHHHHHHHHHH
Confidence 34567999999999999999 99998876 3333 442222 3333333 578889999996653322 23
Q ss_pred hhccCCcEEEEEEECCC
Q 029430 166 IACKDAVAILFMFDLTS 182 (193)
Q Consensus 166 ~~~~~a~~illvyDit~ 182 (193)
..+.++|+++||.|.+.
T Consensus 81 ~sl~dvDlilfvvd~~~ 97 (298)
T COG1159 81 SALKDVDLILFVVDADE 97 (298)
T ss_pred HHhccCcEEEEEEeccc
Confidence 45788999999999987
No 273
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.83 E-value=4.9e-05 Score=58.86 Aligned_cols=54 Identities=13% Similarity=0.279 Sum_probs=35.7
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCccccccccceeeeEEEEEEECCeEEEEEEEeCCC
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 156 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f~~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G 156 (193)
.++++++|.+|||||||+ ++.+.......++-|.......+..++ .+.+.||+|
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~liDtPG 156 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITLMK---RIYLIDCPG 156 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEcCC---CEEEEECcC
Confidence 578999999999999999 998876543333333222222333332 267999988
No 274
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.81 E-value=6.6e-05 Score=63.54 Aligned_cols=92 Identities=12% Similarity=0.070 Sum_probs=64.6
Q ss_pred EEEEECCCCC--ChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEE
Q 029430 102 KISLLGDCQI--GKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (193)
Q Consensus 102 KivllGd~gv--GKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illv 177 (193)
-++++|-+|| ||..|+ ++...+|. +....-..+|+.|++........+.+.-..-.++|............++++|
T Consensus 6 ~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishicde~~lpn~~~a~pl~a~vmv 85 (418)
T KOG4273|consen 6 CALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHICDEKFLPNAEIAEPLQAFVMV 85 (418)
T ss_pred eEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeecccchhccCCcccccceeeEEEE
Confidence 3678999999 999999 99999998 5555666788888775443333333333332233322222223456799999
Q ss_pred EECCChhhHHHHHhcC
Q 029430 178 FDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 178 yDit~~~Sf~~l~~W~ 193 (193)
||++....+..+++|+
T Consensus 86 fdlse~s~l~alqdwl 101 (418)
T KOG4273|consen 86 FDLSEKSGLDALQDWL 101 (418)
T ss_pred EeccchhhhHHHHhhc
Confidence 9999999999999997
No 275
>PLN03127 Elongation factor Tu; Provisional
Probab=97.80 E-value=8.8e-05 Score=67.45 Aligned_cols=83 Identities=8% Similarity=0.121 Sum_probs=56.2
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcC------cc----------c-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCC
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGN------EQ----------E-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 159 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~------~f----------~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~ 159 (193)
...++|+++|-.++|||||+ ++.+- .. . +....+..+. ....+......+.+.||+|+++
T Consensus 59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~--~~~~~~~~~~~i~~iDtPGh~~ 136 (447)
T PLN03127 59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIAT--AHVEYETAKRHYAHVDCPGHAD 136 (447)
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeee--eEEEEcCCCeEEEEEECCCccc
Confidence 45789999999999999999 88621 10 0 1112222232 2333444446788999999988
Q ss_pred CCcchhhhccCCcEEEEEEECCC
Q 029430 160 SFDHVPIACKDAVAILFMFDLTS 182 (193)
Q Consensus 160 ~~~~~~~~~~~a~~illvyDit~ 182 (193)
|......-...+|++++|.|.++
T Consensus 137 f~~~~~~g~~~aD~allVVda~~ 159 (447)
T PLN03127 137 YVKNMITGAAQMDGGILVVSAPD 159 (447)
T ss_pred hHHHHHHHHhhCCEEEEEEECCC
Confidence 76544445567999999999875
No 276
>COG1084 Predicted GTPase [General function prediction only]
Probab=97.79 E-value=7.6e-05 Score=64.94 Aligned_cols=81 Identities=25% Similarity=0.311 Sum_probs=54.4
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCccc-cccc-c-ceeeeEEEEEEECCeEEEEEEEeCCCCCC--CCcchhh------h
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQ-M-AGLNLINKTLMVQGARIAFSIWDVGGDSR--SFDHVPI------A 167 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~-t-~g~~~~~~~i~v~~~~v~l~iwD~~G~e~--~~~~~~~------~ 167 (193)
..-|++.|-++||||||+ ++.+.+.. ..+| | .++++ -.+..++ ..+|+.||.|--+ ...+++. .
T Consensus 168 ~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~v--Ghfe~~~--~R~QvIDTPGlLDRPl~ErN~IE~qAi~A 243 (346)
T COG1084 168 LPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHV--GHFERGY--LRIQVIDTPGLLDRPLEERNEIERQAILA 243 (346)
T ss_pred CCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeE--eeeecCC--ceEEEecCCcccCCChHHhcHHHHHHHHH
Confidence 457999999999999999 88888877 5556 3 34443 2233333 6899999999643 2222211 1
Q ss_pred c-cCCcEEEEEEECCChh
Q 029430 168 C-KDAVAILFMFDLTSRC 184 (193)
Q Consensus 168 ~-~~a~~illvyDit~~~ 184 (193)
+ .-++++||+||.+..+
T Consensus 244 L~hl~~~IlF~~D~Se~c 261 (346)
T COG1084 244 LRHLAGVILFLFDPSETC 261 (346)
T ss_pred HHHhcCeEEEEEcCcccc
Confidence 2 2368999999998754
No 277
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.77 E-value=5.9e-05 Score=64.16 Aligned_cols=56 Identities=13% Similarity=0.296 Sum_probs=40.2
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccccccccceeeeEEEEEEECCeEEEEEEEeCCCC
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 157 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~ 157 (193)
..++++++|.+|||||||+ ++.+.......+.-|.......+.+++ .+.++||+|-
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEeCC---CEEEEECCCc
Confidence 3689999999999999999 998776543333334333344555543 4689999997
No 278
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.72 E-value=9.6e-05 Score=63.23 Aligned_cols=57 Identities=12% Similarity=0.308 Sum_probs=40.5
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccccccccceeeeEEEEEEECCeEEEEEEEeCCCCC
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e 158 (193)
..++++++|.++||||||+ .+.+.+.....+.-|.......+.+++ .+.++||+|--
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~l~DtPGi~ 177 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKLGK---GLELLDTPGIL 177 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEeCC---cEEEEECCCcC
Confidence 3689999999999999999 998876543333334333334455544 47899999974
No 279
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.71 E-value=8.5e-05 Score=59.12 Aligned_cols=54 Identities=15% Similarity=0.251 Sum_probs=37.5
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCccccccccceeeeEEEEEEECCeEEEEEEEeCCC
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 156 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f~~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G 156 (193)
.++++++|.++||||||+ ++.+.......+.-|.......+.++. .+.++||.|
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~~~---~~~l~DtPG 171 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHLDK---KVKLLDSPG 171 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEeCC---CEEEEECcC
Confidence 589999999999999999 988766543333233333334444443 478999988
No 280
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=97.65 E-value=0.00035 Score=66.20 Aligned_cols=80 Identities=21% Similarity=0.254 Sum_probs=52.8
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCc-cc-cc-cc-cceeeeEEEEEEECCeEEEEEEEeCCCCCCCCc-------ch--
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNE-QE-RS-LQ-MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD-------HV-- 164 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~-f~-~~-~~-t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~-------~~-- 164 (193)
..++|+|+|.+||||||++ .+++.+ |. .. .+ |... ......+++ ..+.++||.|-..... +.
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~--~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~ 192 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSV--QEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSS 192 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEE--EEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHH
Confidence 3689999999999999999 988875 43 22 12 3322 122233455 6789999999775421 11
Q ss_pred -hhhcc--CCcEEEEEEECCC
Q 029430 165 -PIACK--DAVAILFMFDLTS 182 (193)
Q Consensus 165 -~~~~~--~a~~illvyDit~ 182 (193)
..++. ..|++|+|..++.
T Consensus 193 Ik~~Lsk~gpDVVLlV~RLd~ 213 (763)
T TIGR00993 193 VKKFIKKNPPDIVLYVDRLDM 213 (763)
T ss_pred HHHHHhcCCCCEEEEEEeCCC
Confidence 11333 5799999998763
No 281
>PRK00007 elongation factor G; Reviewed
Probab=97.62 E-value=0.00013 Score=69.55 Aligned_cols=82 Identities=13% Similarity=0.085 Sum_probs=57.0
Q ss_pred eeEEEEECCCCCChhhHH-hhhc--Cccc-----------------cccccceeeeEEEEEEECCeEEEEEEEeCCCCCC
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVG--NEQE-----------------RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 159 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~--~~f~-----------------~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~ 159 (193)
-.+|.++|..++|||||+ +++. +... +....+..+.....+..++ ..+++.||+|..+
T Consensus 10 Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~--~~~~liDTPG~~~ 87 (693)
T PRK00007 10 YRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKD--HRINIIDTPGHVD 87 (693)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECC--eEEEEEeCCCcHH
Confidence 459999999999999999 9973 2110 0111222233333444444 6889999999887
Q ss_pred CCcchhhhccCCcEEEEEEECCCh
Q 029430 160 SFDHVPIACKDAVAILFMFDLTSR 183 (193)
Q Consensus 160 ~~~~~~~~~~~a~~illvyDit~~ 183 (193)
|.......++.+|++|+|.|.+..
T Consensus 88 f~~ev~~al~~~D~~vlVvda~~g 111 (693)
T PRK00007 88 FTIEVERSLRVLDGAVAVFDAVGG 111 (693)
T ss_pred HHHHHHHHHHHcCEEEEEEECCCC
Confidence 765556678889999999998754
No 282
>PTZ00416 elongation factor 2; Provisional
Probab=97.55 E-value=0.00015 Score=70.63 Aligned_cols=84 Identities=15% Similarity=0.191 Sum_probs=57.9
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCcc------------ccc---cccceeeeE--EEEEEEC--------CeEEEEEEEe
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQ------------ERS---LQMAGLNLI--NKTLMVQ--------GARIAFSIWD 153 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f------------~~~---~~t~g~~~~--~~~i~v~--------~~~v~l~iwD 153 (193)
..+|+++|..++|||||+ +++...- .++ +...|+.+. ...+.++ +....+.+.|
T Consensus 19 irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~liD 98 (836)
T PTZ00416 19 IRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLID 98 (836)
T ss_pred cCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEEc
Confidence 348999999999999999 9875211 000 001122211 1122222 2357899999
Q ss_pred CCCCCCCCcchhhhccCCcEEEEEEECCCh
Q 029430 154 VGGDSRSFDHVPIACKDAVAILFMFDLTSR 183 (193)
Q Consensus 154 ~~G~e~~~~~~~~~~~~a~~illvyDit~~ 183 (193)
|+|..+|.......++.+|++|+|.|.++.
T Consensus 99 tPG~~~f~~~~~~al~~~D~ailVvda~~g 128 (836)
T PTZ00416 99 SPGHVDFSSEVTAALRVTDGALVVVDCVEG 128 (836)
T ss_pred CCCHHhHHHHHHHHHhcCCeEEEEEECCCC
Confidence 999999887778889999999999998773
No 283
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=97.51 E-value=0.0001 Score=71.75 Aligned_cols=84 Identities=15% Similarity=0.207 Sum_probs=58.5
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCcc------------ccccc---cceeeeE--EEEEEE--------------CCeEE
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQ------------ERSLQ---MAGLNLI--NKTLMV--------------QGARI 147 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f------------~~~~~---t~g~~~~--~~~i~v--------------~~~~v 147 (193)
-.+|+++|..++|||||+ +++...- .++.+ ..|..+. ...+.+ ++..+
T Consensus 19 Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
T PLN00116 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNEY 98 (843)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCce
Confidence 458999999999999999 8875331 01101 1122221 112222 22357
Q ss_pred EEEEEeCCCCCCCCcchhhhccCCcEEEEEEECCCh
Q 029430 148 AFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR 183 (193)
Q Consensus 148 ~l~iwD~~G~e~~~~~~~~~~~~a~~illvyDit~~ 183 (193)
.+++.||+|+.+|.......++.+|+.|+|.|.++-
T Consensus 99 ~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~G 134 (843)
T PLN00116 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG 134 (843)
T ss_pred EEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCC
Confidence 889999999999988878888999999999998864
No 284
>PRK07560 elongation factor EF-2; Reviewed
Probab=97.50 E-value=0.00015 Score=69.67 Aligned_cols=84 Identities=13% Similarity=0.156 Sum_probs=58.8
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCccc------------cccc---cceeeeE----EEEEEECCeEEEEEEEeCCCCCC
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQE------------RSLQ---MAGLNLI----NKTLMVQGARIAFSIWDVGGDSR 159 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f~------------~~~~---t~g~~~~----~~~i~v~~~~v~l~iwD~~G~e~ 159 (193)
--+|+++|..++|||||+ +++...-. ++.+ ..|+.+. ......++....+.+.||.|..+
T Consensus 20 iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~d 99 (731)
T PRK07560 20 IRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHVD 99 (731)
T ss_pred ccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCccC
Confidence 457999999999999999 88742110 1111 1111111 11223355678899999999999
Q ss_pred CCcchhhhccCCcEEEEEEECCCh
Q 029430 160 SFDHVPIACKDAVAILFMFDLTSR 183 (193)
Q Consensus 160 ~~~~~~~~~~~a~~illvyDit~~ 183 (193)
|.......++.+|++|+|.|....
T Consensus 100 f~~~~~~~l~~~D~avlVvda~~g 123 (731)
T PRK07560 100 FGGDVTRAMRAVDGAIVVVDAVEG 123 (731)
T ss_pred hHHHHHHHHHhcCEEEEEEECCCC
Confidence 887777889999999999998764
No 285
>PRK14845 translation initiation factor IF-2; Provisional
Probab=97.46 E-value=0.0002 Score=70.92 Aligned_cols=42 Identities=12% Similarity=0.071 Sum_probs=37.6
Q ss_pred EEEEeCCCCCCCCcchhhhccCCcEEEEEEECCC---hhhHHHHH
Q 029430 149 FSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTS---RCTLNRFD 190 (193)
Q Consensus 149 l~iwD~~G~e~~~~~~~~~~~~a~~illvyDit~---~~Sf~~l~ 190 (193)
+.+|||+|++.|..+....+..+|++++|+|+++ +.+++.+.
T Consensus 528 i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~ 572 (1049)
T PRK14845 528 LLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAIN 572 (1049)
T ss_pred EEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHH
Confidence 8999999999998888888899999999999997 77887664
No 286
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=97.43 E-value=0.0008 Score=63.39 Aligned_cols=83 Identities=19% Similarity=0.199 Sum_probs=61.7
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCC------cchhhhcc--
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF------DHVPIACK-- 169 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~------~~~~~~~~-- 169 (193)
..+|.++|.++||||||. ++.+.+.. ...|-+..|-..-.+..++ -++++.|..|--... .....|+.
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~--~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~ 80 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKG--HEIEIVDLPGTYSLTAYSEDEKVARDFLLEG 80 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecC--ceEEEEeCCCcCCCCCCCchHHHHHHHHhcC
Confidence 467999999999999999 99888776 6777666666556666666 448899999864322 23344443
Q ss_pred CCcEEEEEEECCChh
Q 029430 170 DAVAILFMFDLTSRC 184 (193)
Q Consensus 170 ~a~~illvyDit~~~ 184 (193)
+.|++|-|.|.+|-+
T Consensus 81 ~~D~ivnVvDAtnLe 95 (653)
T COG0370 81 KPDLIVNVVDATNLE 95 (653)
T ss_pred CCCEEEEEcccchHH
Confidence 469999999999965
No 287
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.40 E-value=0.00025 Score=56.48 Aligned_cols=53 Identities=13% Similarity=0.318 Sum_probs=34.1
Q ss_pred eEEEEECCCCCChhhHH-hhhcCccc--------cccccceeeeEEEEEEECCeEEEEEEEeCCC
Q 029430 101 LKISLLGDCQIGKTSFV-KYVGNEQE--------RSLQMAGLNLINKTLMVQGARIAFSIWDVGG 156 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~~~f~--------~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G 156 (193)
.+++++|.+|||||||+ .+.+.... ...+..|.......+.++. .+.|+||+|
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG 189 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPG 189 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcC
Confidence 57999999999999999 88865421 1111112222233444443 478999998
No 288
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=97.38 E-value=0.00024 Score=59.83 Aligned_cols=60 Identities=13% Similarity=0.340 Sum_probs=43.5
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccc----------cccccceeeeEEEEEEECCeEEEEEEEeCCCCC
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE----------RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~----------~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e 158 (193)
..|+|++||.+|.|||+|+ -+...+.. .+..|+++......+.-++.+.++++.||.|-.
T Consensus 45 F~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfG 115 (336)
T KOG1547|consen 45 FDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFG 115 (336)
T ss_pred CceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcc
Confidence 4789999999999999999 44322211 122256666666667778888999999999843
No 289
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=97.32 E-value=0.00018 Score=63.99 Aligned_cols=79 Identities=18% Similarity=0.227 Sum_probs=40.8
Q ss_pred eeeEEEEECCCCCChhhHH-hhhc--Ccccccccccee-e--eEEEEEEECCeEEEEEEEeCCCCCCCCcchhhh-----
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVG--NEQERSLQMAGL-N--LINKTLMVQGARIAFSIWDVGGDSRSFDHVPIA----- 167 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~--~~f~~~~~t~g~-~--~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~----- 167 (193)
..++|.|.|++|+|||||+ -+-+ .+-. ....+|. + .....+.. ..--.+.+||..|-.........|
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~-~aA~tGv~etT~~~~~Y~~-p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~ 111 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDE-GAAPTGVVETTMEPTPYPH-PKFPNVTLWDLPGIGTPNFPPEEYLKEVK 111 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTST-TS--SSSHSCCTS-EEEE--SS-TTEEEEEE--GGGSS--HHHHHHHTT
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCc-CcCCCCCCcCCCCCeeCCC-CCCCCCeEEeCCCCCCCCCCHHHHHHHcc
Confidence 4689999999999999999 6643 3222 2222222 1 11111221 112248899999875544333333
Q ss_pred ccCCcEEEEEEE
Q 029430 168 CKDAVAILFMFD 179 (193)
Q Consensus 168 ~~~a~~illvyD 179 (193)
+..-|.||++.+
T Consensus 112 ~~~yD~fiii~s 123 (376)
T PF05049_consen 112 FYRYDFFIIISS 123 (376)
T ss_dssp GGG-SEEEEEES
T ss_pred ccccCEEEEEeC
Confidence 345688888765
No 290
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.28 E-value=0.00054 Score=59.77 Aligned_cols=58 Identities=12% Similarity=0.280 Sum_probs=43.6
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcCccccccccceeeeEEEEEEECCeEEEEEEEeCCCCC
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~~f~~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e 158 (193)
....++.++|-++||||||+ ++++..-....+.-|..-....+.++.. +.++||.|--
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~~~---i~LlDtPGii 188 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLDDG---IYLLDTPGII 188 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcCCC---eEEecCCCcC
Confidence 34678999999999999999 9998876543333355555566777664 8899999843
No 291
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=97.25 E-value=0.00063 Score=52.52 Aligned_cols=38 Identities=16% Similarity=0.183 Sum_probs=29.9
Q ss_pred EEEEEeCCCCC----CCCcchhhhccCCcEEEEEEECCChhh
Q 029430 148 AFSIWDVGGDS----RSFDHVPIACKDAVAILFMFDLTSRCT 185 (193)
Q Consensus 148 ~l~iwD~~G~e----~~~~~~~~~~~~a~~illvyDit~~~S 185 (193)
.+.|.|+.|-. ....+...|+..+|++|+|.|.++..+
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~ 143 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLT 143 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGG
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccc
Confidence 57799998863 244667788899999999999988443
No 292
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.25 E-value=0.0017 Score=55.21 Aligned_cols=83 Identities=20% Similarity=0.285 Sum_probs=58.1
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCccc--cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCc-------chhhhcc
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD-------HVPIACK 169 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f~--~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~-------~~~~~~~ 169 (193)
.-+|+++|-+.||||+|+ .+..-+-. .|.-|+ ...-.-.+.++| ..+++.|..|.-+-.+ ..-..-+
T Consensus 62 daRValIGfPSVGKStlLs~iT~T~SeaA~yeFTT-LtcIpGvi~y~g--a~IQllDLPGIieGAsqgkGRGRQviavAr 138 (364)
T KOG1486|consen 62 DARVALIGFPSVGKSTLLSKITSTHSEAASYEFTT-LTCIPGVIHYNG--ANIQLLDLPGIIEGASQGKGRGRQVIAVAR 138 (364)
T ss_pred CeEEEEecCCCccHHHHHHHhhcchhhhhceeeeE-EEeecceEEecC--ceEEEecCcccccccccCCCCCceEEEEee
Confidence 458999999999999999 77766555 444444 444456677787 5678999876432111 1123457
Q ss_pred CCcEEEEEEECCChhh
Q 029430 170 DAVAILFMFDLTSRCT 185 (193)
Q Consensus 170 ~a~~illvyDit~~~S 185 (193)
.||.+++|.|.+..+-
T Consensus 139 taDlilMvLDatk~e~ 154 (364)
T KOG1486|consen 139 TADLILMVLDATKSED 154 (364)
T ss_pred cccEEEEEecCCcchh
Confidence 8999999999998654
No 293
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=97.22 E-value=0.00078 Score=59.46 Aligned_cols=61 Identities=18% Similarity=0.398 Sum_probs=45.7
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccc-c----------ccccceeeeEEEEEEECCeEEEEEEEeCCCCCC
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-R----------SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 159 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~-~----------~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~ 159 (193)
..+.|+++|++|.|||+|+ .+++.... + ..+++.+......+.=+|..+.+++.||.|-..
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD 94 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGD 94 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccc
Confidence 4789999999999999999 88766332 1 234555666555555578889999999998544
No 294
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=97.20 E-value=0.00012 Score=55.65 Aligned_cols=73 Identities=16% Similarity=0.269 Sum_probs=42.4
Q ss_pred EEEEECCCCCChhhHHhhhcCccccccccceeeeEEEEEEECCeEEEEEEEeCCCCC----CCCcchhhhccCCcEEEEE
Q 029430 102 KISLLGDCQIGKTSFVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS----RSFDHVPIACKDAVAILFM 177 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~f~~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e----~~~~~~~~~~~~a~~illv 177 (193)
|++++|..|+|||+|.+-+.|+...|.-|..+++..+. ..||.|.- .+..-.-....+++++++|
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~lykKTQAve~~d~~-----------~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v 71 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLYKKTQAVEFNDKG-----------DIDTPGEYFEHPRWYHALITTLQDADVIIYV 71 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhhcccceeeccCcc-----------ccCCchhhhhhhHHHHHHHHHhhccceeeee
Confidence 79999999999999993344444445556666664441 22444421 1111112234567777777
Q ss_pred EECCChhh
Q 029430 178 FDLTSRCT 185 (193)
Q Consensus 178 yDit~~~S 185 (193)
-..++++|
T Consensus 72 ~~and~~s 79 (148)
T COG4917 72 HAANDPES 79 (148)
T ss_pred ecccCccc
Confidence 77666643
No 295
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=97.17 E-value=0.0012 Score=54.40 Aligned_cols=76 Identities=21% Similarity=0.322 Sum_probs=48.8
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEE
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illv 177 (193)
...|+++|.+|+|||+|+ .++...-. ......|. + ++ ......++.+.|++|.- ..+. ...+.+|++++|
T Consensus 39 ~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i---~i-~~~~~~~i~~vDtPg~~--~~~l-~~ak~aDvVllv 110 (225)
T cd01882 39 PLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I---TV-VTGKKRRLTFIECPNDI--NAMI-DIAKVADLVLLL 110 (225)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E---EE-EecCCceEEEEeCCchH--HHHH-HHHHhcCEEEEE
Confidence 578999999999999999 77654211 11111221 1 11 11234677899999853 2222 246789999999
Q ss_pred EECCCh
Q 029430 178 FDLTSR 183 (193)
Q Consensus 178 yDit~~ 183 (193)
.|.+..
T Consensus 111 iDa~~~ 116 (225)
T cd01882 111 IDASFG 116 (225)
T ss_pred EecCcC
Confidence 998753
No 296
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.16 E-value=0.0012 Score=59.10 Aligned_cols=87 Identities=15% Similarity=0.250 Sum_probs=56.1
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcC--cccc-----c---cccc--------------------eeeeEEEEEEECCeE
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGN--EQER-----S---LQMA--------------------GLNLINKTLMVQGAR 146 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~--~f~~-----~---~~t~--------------------g~~~~~~~i~v~~~~ 146 (193)
...++++++|.-..|||+|+ |++.+ .++. + .... |..+......+....
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k 84 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK 84 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence 34799999999999999999 88643 1110 0 0011 222211222222334
Q ss_pred EEEEEEeCCCCCCCCcchhhhccCCcEEEEEEECCChh
Q 029430 147 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRC 184 (193)
Q Consensus 147 v~l~iwD~~G~e~~~~~~~~~~~~a~~illvyDit~~~ 184 (193)
+.+.|.|+.|+..|-.-.-.-...||+.|||.|..+.+
T Consensus 85 ~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~e 122 (428)
T COG5256 85 YNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGE 122 (428)
T ss_pred ceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCc
Confidence 68999999997766544444456799999999988753
No 297
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.12 E-value=0.001 Score=58.79 Aligned_cols=61 Identities=11% Similarity=0.317 Sum_probs=43.5
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccc-c---------ccccceeeeEEEEEEECCeEEEEEEEeCCCCCC
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-R---------SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 159 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~-~---------~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~ 159 (193)
..|.++++|++|.|||||+ .+....+. + ...|+.++.+...+.=+|..+.|++.||.|-.+
T Consensus 20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD 91 (366)
T KOG2655|consen 20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGD 91 (366)
T ss_pred CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcc
Confidence 3689999999999999999 76554333 1 112445555544555578889999999998544
No 298
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=97.12 E-value=0.0014 Score=54.09 Aligned_cols=81 Identities=16% Similarity=0.186 Sum_probs=52.0
Q ss_pred eEEEEECCCCCChhhHH-hhhcC--ccc--cc-cc-cceeeeEEEEEEECCeEEEEEEEeCCCCCCCCc------chhhh
Q 029430 101 LKISLLGDCQIGKTSFV-KYVGN--EQE--RS-LQ-MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD------HVPIA 167 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~~--~f~--~~-~~-t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~------~~~~~ 167 (193)
.=|.++|..++|||+|+ ++++. .|. .. .+ |.|+-.....+.. +....+.+.||.|-..... ..-..
T Consensus 8 ~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~-~~~~~v~~lDteG~~~~~~~~~~~~~~~~~ 86 (224)
T cd01851 8 AVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKL-GKEHAVLLLDTEGTDGRERGEFEDDARLFA 86 (224)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccC-CCcceEEEEecCCcCccccCchhhhhHHHH
Confidence 44789999999999999 99988 776 22 22 5666554433322 3457899999999764322 11222
Q ss_pred ccC--CcEEEEEEECCC
Q 029430 168 CKD--AVAILFMFDLTS 182 (193)
Q Consensus 168 ~~~--a~~illvyDit~ 182 (193)
+.. ++.+|+..+...
T Consensus 87 l~~llss~~i~n~~~~~ 103 (224)
T cd01851 87 LATLLSSVLIYNSWETI 103 (224)
T ss_pred HHHHHhCEEEEeccCcc
Confidence 333 677776665544
No 299
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=97.04 E-value=0.0015 Score=57.53 Aligned_cols=51 Identities=22% Similarity=0.440 Sum_probs=43.1
Q ss_pred cccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEEEECCC
Q 029430 128 LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTS 182 (193)
Q Consensus 128 ~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illvyDit~ 182 (193)
.+|+|+.. ..+.+++ +.+.+||++||...+..|..|+.+.+++|+|.|+++
T Consensus 169 ~~T~Gi~~--~~f~~~~--~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd 219 (342)
T smart00275 169 VPTTGIQE--TAFIVKK--LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSE 219 (342)
T ss_pred CCccceEE--EEEEECC--eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcc
Confidence 45667654 3455665 778999999999999999999999999999999997
No 300
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.04 E-value=0.0017 Score=50.17 Aligned_cols=52 Identities=13% Similarity=0.275 Sum_probs=34.0
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCccc--cccccceeeeEEEEEEECCeEEEEEEEeCCC
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGG 156 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f~--~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G 156 (193)
...++++|.+|||||||+ .+.+..-. ...+.+..+. ..+.++ -.+.+.||+|
T Consensus 100 ~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~--~~~~~~---~~~~liDtPG 154 (155)
T cd01849 100 SITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQ--QEVKLD---NKIKLLDTPG 154 (155)
T ss_pred CcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccce--EEEEec---CCEEEEECCC
Confidence 578999999999999999 87766532 2223221222 223333 2478999988
No 301
>COG0218 Predicted GTPase [General function prediction only]
Probab=97.01 E-value=0.0016 Score=53.13 Aligned_cols=80 Identities=14% Similarity=0.256 Sum_probs=51.8
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCC----------CCCCCcchhhh
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGG----------DSRSFDHVPIA 167 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G----------~e~~~~~~~~~ 167 (193)
..-|+++|-++||||||+ .+++..-. ....|-|..-...-+.++++ +.+.|..| +|....+...|
T Consensus 24 ~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i~~Y 100 (200)
T COG0218 24 LPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLIEEY 100 (200)
T ss_pred CcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHHHHH
Confidence 457999999999999999 99886633 33344443322223445553 77899887 23344455556
Q ss_pred ccC---CcEEEEEEECCC
Q 029430 168 CKD---AVAILFMFDLTS 182 (193)
Q Consensus 168 ~~~---a~~illvyDit~ 182 (193)
++. -.+++++.|+-.
T Consensus 101 L~~R~~L~~vvlliD~r~ 118 (200)
T COG0218 101 LEKRANLKGVVLLIDARH 118 (200)
T ss_pred HhhchhheEEEEEEECCC
Confidence 654 357777778754
No 302
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=96.98 E-value=0.0028 Score=56.38 Aligned_cols=82 Identities=11% Similarity=0.061 Sum_probs=55.0
Q ss_pred eEEEEECCCCCChhhHH-hhhcCcc-c-cccccceeeeEEEEEEECCeE---------------EEEEEEeCCCCCC---
Q 029430 101 LKISLLGDCQIGKTSFV-KYVGNEQ-E-RSLQMAGLNLINKTLMVQGAR---------------IAFSIWDVGGDSR--- 159 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~~~f-~-~~~~t~g~~~~~~~i~v~~~~---------------v~l~iwD~~G~e~--- 159 (193)
+|+-++|.++||||||. .+.+... . ..+|-...+-..-.+.+.+.+ ..+++.|++|--+
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 78999999999999999 8877766 4 344422122223455555432 4678999998543
Q ss_pred -CCcc---hhhhccCCcEEEEEEECCC
Q 029430 160 -SFDH---VPIACKDAVAILFMFDLTS 182 (193)
Q Consensus 160 -~~~~---~~~~~~~a~~illvyDit~ 182 (193)
-..+ .-...+.+|+++.|.|..+
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 2222 2235778999999999854
No 303
>PRK12289 GTPase RsgA; Reviewed
Probab=96.97 E-value=0.0013 Score=58.17 Aligned_cols=57 Identities=14% Similarity=0.163 Sum_probs=33.8
Q ss_pred EEEEECCCCCChhhHH-hhhcCccccccccce-------eeeEEEEEEECCeEEEEEEEeCCCCCCCC
Q 029430 102 KISLLGDCQIGKTSFV-KYVGNEQERSLQMAG-------LNLINKTLMVQGARIAFSIWDVGGDSRSF 161 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~~~f~~~~~t~g-------~~~~~~~i~v~~~~v~l~iwD~~G~e~~~ 161 (193)
-++|+|.+|||||||+ .++.+.-....+..| ..-....+.+++. ..|.||+|-..+.
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g---~~liDTPG~~~~~ 238 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNG---GLLADTPGFNQPD 238 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCC---cEEEeCCCccccc
Confidence 3799999999999999 888654331111111 1111233344322 2689999965543
No 304
>PRK13768 GTPase; Provisional
Probab=96.88 E-value=0.00072 Score=56.88 Aligned_cols=37 Identities=11% Similarity=0.152 Sum_probs=26.2
Q ss_pred EEEEEeCCCCCCC---CcchhhhccC-----CcEEEEEEECCChh
Q 029430 148 AFSIWDVGGDSRS---FDHVPIACKD-----AVAILFMFDLTSRC 184 (193)
Q Consensus 148 ~l~iwD~~G~e~~---~~~~~~~~~~-----a~~illvyDit~~~ 184 (193)
.+.+||++|+.+. ...++.+++. ++++++++|.+...
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~ 142 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAK 142 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhC
Confidence 6889999998774 3333333332 88999999996543
No 305
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=96.88 E-value=0.0017 Score=54.45 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=20.4
Q ss_pred eEEEEECCCCCChhhHH-hhhcCcc
Q 029430 101 LKISLLGDCQIGKTSFV-KYVGNEQ 124 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~~~f 124 (193)
-.++++|.+|||||||+ +++...-
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~ 145 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVK 145 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhh
Confidence 36899999999999999 8886543
No 306
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.87 E-value=0.0015 Score=56.08 Aligned_cols=58 Identities=21% Similarity=0.336 Sum_probs=43.5
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCcccc-----ccccceeeeEEEEEEECCeEEEEEEEeCCC
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQER-----SLQMAGLNLINKTLMVQGARIAFSIWDVGG 156 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~~-----~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G 156 (193)
..|+|+.||+.|.|||+|+ .+.+-.|.. ..|+++....++.+.-.+.++++.|.||.|
T Consensus 41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG 104 (406)
T KOG3859|consen 41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG 104 (406)
T ss_pred ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence 4799999999999999999 998888872 233444443333333457789999999987
No 307
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=96.84 E-value=0.001 Score=52.57 Aligned_cols=22 Identities=27% Similarity=0.520 Sum_probs=19.5
Q ss_pred EEEEECCCCCChhhHH-hhhcCc
Q 029430 102 KISLLGDCQIGKTSFV-KYVGNE 123 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~~~ 123 (193)
-++|+|.+|||||||+ .++...
T Consensus 37 ~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 37 TSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 5899999999999999 888763
No 308
>PRK12288 GTPase RsgA; Reviewed
Probab=96.79 E-value=0.0019 Score=56.99 Aligned_cols=56 Identities=13% Similarity=0.137 Sum_probs=33.7
Q ss_pred EEEECCCCCChhhHH-hhhcCccc--ccccc---ceee--eEEEEEEECCeEEEEEEEeCCCCCCCC
Q 029430 103 ISLLGDCQIGKTSFV-KYVGNEQE--RSLQM---AGLN--LINKTLMVQGARIAFSIWDVGGDSRSF 161 (193)
Q Consensus 103 ivllGd~gvGKTSLl-r~~~~~f~--~~~~t---~g~~--~~~~~i~v~~~~v~l~iwD~~G~e~~~ 161 (193)
++|+|.+|||||||+ .++.+.-. ...+. .|-. .....+.+++. ..|.||+|-..+.
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~~ 271 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREFG 271 (347)
T ss_pred EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCccc
Confidence 799999999999999 98876543 22211 1111 11222334322 2489999976654
No 309
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=96.79 E-value=0.0029 Score=55.85 Aligned_cols=37 Identities=24% Similarity=0.473 Sum_probs=33.4
Q ss_pred EEEEEEeCCCCCCCCcchhhhccCCcEEEEEEECCCh
Q 029430 147 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR 183 (193)
Q Consensus 147 v~l~iwD~~G~e~~~~~~~~~~~~a~~illvyDit~~ 183 (193)
..+.++|++||..-+.-|..++.+.+++|||.++++-
T Consensus 195 ~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeY 231 (354)
T KOG0082|consen 195 LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEY 231 (354)
T ss_pred CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhh
Confidence 7888999999988888888899999999999998763
No 310
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.72 E-value=0.0027 Score=50.37 Aligned_cols=51 Identities=27% Similarity=0.517 Sum_probs=33.7
Q ss_pred EEEEECCCCCChhhHH-hhhcCccccccccceeeeEEEEEEECCeEEEEEEEeC
Q 029430 102 KISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDV 154 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~~~f~~~~~t~g~~~~~~~i~v~~~~v~l~iwD~ 154 (193)
||++-|++|+|||||+ +++..--....+.-| |++..+.-++..+-+.+.|.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~~v~G--f~t~evr~~g~r~GF~iv~l 52 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKGLPVGG--FYTEEVRENGRRIGFDIVDL 52 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTCGGEEE--EEEEEEETTSSEEEEEEEET
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccCCccce--EEeecccCCCceEEEEEEEC
Confidence 6899999999999999 877332112223333 44455556777777788787
No 311
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=96.71 E-value=0.0053 Score=56.47 Aligned_cols=90 Identities=10% Similarity=0.091 Sum_probs=65.9
Q ss_pred EEEEECCCCCChhhHH-hhhcCccccccc-cceeeeEEEEEEECC-eEEEEEEEeCCCCCCCCcchhhhccCCcEEEEEE
Q 029430 102 KISLLGDCQIGKTSFV-KYVGNEQERSLQ-MAGLNLINKTLMVQG-ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 178 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~~~f~~~~~-t~g~~~~~~~i~v~~-~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illvy 178 (193)
=|+++|-=--|||||+ .+=.......++ -+...+....+.++. ..-.+.+.||+|++-|..|+.-=..-+|.++||.
T Consensus 7 vVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILVV 86 (509)
T COG0532 7 VVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAILVV 86 (509)
T ss_pred EEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEEEEE
Confidence 3789999999999999 776555442222 233334444555542 3457889999999999999977677789999999
Q ss_pred ECCC---hhhHHHHHh
Q 029430 179 DLTS---RCTLNRFDH 191 (193)
Q Consensus 179 Dit~---~~Sf~~l~~ 191 (193)
|+.| ++|.|.+.+
T Consensus 87 a~dDGv~pQTiEAI~h 102 (509)
T COG0532 87 AADDGVMPQTIEAINH 102 (509)
T ss_pred EccCCcchhHHHHHHH
Confidence 9988 678777654
No 312
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=96.68 E-value=0.0021 Score=55.08 Aligned_cols=58 Identities=14% Similarity=0.158 Sum_probs=35.1
Q ss_pred eEEEEECCCCCChhhHH-hhhcCccc--cccc-c--cee--eeEEEEEEECCeEEEEEEEeCCCCCCCC
Q 029430 101 LKISLLGDCQIGKTSFV-KYVGNEQE--RSLQ-M--AGL--NLINKTLMVQGARIAFSIWDVGGDSRSF 161 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~~~f~--~~~~-t--~g~--~~~~~~i~v~~~~v~l~iwD~~G~e~~~ 161 (193)
-.++++|.+|||||||+ .+++.... ...+ + .|. ......+.+++. ..++||+|...+.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~~ 227 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREFG 227 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCccC
Confidence 47999999999999999 88766543 1111 1 111 111223333321 2589999986654
No 313
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=96.62 E-value=0.0062 Score=57.72 Aligned_cols=91 Identities=18% Similarity=0.249 Sum_probs=66.9
Q ss_pred CceeeEEEEECCCCCChhhHH-hhhcCccccc----------------cccceeeeEEEEEEE-----CCeEEEEEEEeC
Q 029430 97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQERS----------------LQMAGLNLINKTLMV-----QGARIAFSIWDV 154 (193)
Q Consensus 97 ~~~~~KivllGd~gvGKTSLl-r~~~~~f~~~----------------~~t~g~~~~~~~i~v-----~~~~v~l~iwD~ 154 (193)
+..-.++.++|.-+.|||+|+ .++....++. +...|+.+....+++ +++.+.+++.||
T Consensus 125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT 204 (971)
T KOG0468|consen 125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT 204 (971)
T ss_pred cceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecC
Confidence 344678999999999999999 8876543311 111233333333322 467899999999
Q ss_pred CCCCCCCcchhhhccCCcEEEEEEECCChhhHH
Q 029430 155 GGDSRSFDHVPIACKDAVAILFMFDLTSRCTLN 187 (193)
Q Consensus 155 ~G~e~~~~~~~~~~~~a~~illvyDit~~~Sf~ 187 (193)
.|+-.|.+.....++-+|++++|+|+.+--+|+
T Consensus 205 PGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmln 237 (971)
T KOG0468|consen 205 PGHVNFSDETTASLRLSDGVVLVVDVAEGVMLN 237 (971)
T ss_pred CCcccchHHHHHHhhhcceEEEEEEcccCceee
Confidence 999999988888899999999999998754443
No 314
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=96.62 E-value=0.00041 Score=58.00 Aligned_cols=34 Identities=18% Similarity=0.443 Sum_probs=20.9
Q ss_pred EEEEEeCCCCCCCCcchhhhc--------cCCcEEEEEEECC
Q 029430 148 AFSIWDVGGDSRSFDHVPIAC--------KDAVAILFMFDLT 181 (193)
Q Consensus 148 ~l~iwD~~G~e~~~~~~~~~~--------~~a~~illvyDit 181 (193)
.+.|+||.||.+....+.... ...-+++++.|..
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~ 133 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSS 133 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GG
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecc
Confidence 789999999998766665443 4566888888875
No 315
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.51 E-value=0.0062 Score=48.41 Aligned_cols=56 Identities=29% Similarity=0.407 Sum_probs=40.9
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCccccccccceeeeEEEEEEECCeEEEEEEEeCCCC
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 157 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f~~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~ 157 (193)
.+||.+-|.+|||||+|+ +..+.--... -++ .-|+..++.-+|+.+-|.|-|.+..
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g-~kv-gGf~t~EVR~gGkR~GF~Ivdl~tg 61 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKG-YKV-GGFITPEVREGGKRIGFKIVDLATG 61 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcC-cee-eeEEeeeeecCCeEeeeEEEEccCC
Confidence 689999999999999999 7663221111 123 2456677788899999999998833
No 316
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=96.37 E-value=0.0077 Score=53.27 Aligned_cols=54 Identities=17% Similarity=0.316 Sum_probs=34.6
Q ss_pred eEEEEECCCCCChhhHH-hhhcCcc------c-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCC
Q 029430 101 LKISLLGDCQIGKTSFV-KYVGNEQ------E-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 159 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~~~f------~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~ 159 (193)
.+++++|.+|||||||+ .++.... . ...|.+..+ ...+.+++ .+.++||.|-..
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~--~~~~~~~~---~~~l~DtPG~~~ 216 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLD--LIEIPLDD---GHSLYDTPGIIN 216 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEee--EEEEEeCC---CCEEEECCCCCC
Confidence 48999999999999999 8876432 1 222321122 22344433 256999999654
No 317
>PRK00098 GTPase RsgA; Reviewed
Probab=96.33 E-value=0.0042 Score=53.51 Aligned_cols=23 Identities=17% Similarity=0.309 Sum_probs=19.7
Q ss_pred eEEEEECCCCCChhhHH-hhhcCc
Q 029430 101 LKISLLGDCQIGKTSFV-KYVGNE 123 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~~~ 123 (193)
..++++|.+|||||||+ .+++..
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCc
Confidence 46899999999999999 887654
No 318
>PRK13796 GTPase YqeH; Provisional
Probab=96.25 E-value=0.008 Score=53.27 Aligned_cols=55 Identities=13% Similarity=0.279 Sum_probs=33.9
Q ss_pred eEEEEECCCCCChhhHH-hhhcCccc-----cccccceeeeEEEEEEECCeEEEEEEEeCCCCC
Q 029430 101 LKISLLGDCQIGKTSFV-KYVGNEQE-----RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~~~f~-----~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e 158 (193)
.++.++|.+|||||||+ +++..... ...+.-|.......+.+++. ..++||+|-.
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi~ 221 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGII 221 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCcc
Confidence 47999999999999999 98854311 11111122222234445443 3699999974
No 319
>COG2262 HflX GTPases [General function prediction only]
Probab=96.22 E-value=0.024 Score=50.86 Aligned_cols=90 Identities=18% Similarity=0.222 Sum_probs=60.1
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCC--cchhhh------cc
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF--DHVPIA------CK 169 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~--~~~~~~------~~ 169 (193)
-..|.++|=.++|||||. .+.+.... +..--.-.+-..+.+.+.+ .-.+-+-||.|--+.- .+...| ..
T Consensus 192 ~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~ 270 (411)
T COG2262 192 IPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVK 270 (411)
T ss_pred CCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHHHHhh
Confidence 357999999999999999 88865544 2211112344557777764 3556788999854321 222222 46
Q ss_pred CCcEEEEEEECCChhhHHHHH
Q 029430 170 DAVAILFMFDLTSRCTLNRFD 190 (193)
Q Consensus 170 ~a~~illvyDit~~~Sf~~l~ 190 (193)
.+|.+|.|.|.+++.-.+.++
T Consensus 271 ~aDlllhVVDaSdp~~~~~~~ 291 (411)
T COG2262 271 EADLLLHVVDASDPEILEKLE 291 (411)
T ss_pred cCCEEEEEeecCChhHHHHHH
Confidence 799999999999996655543
No 320
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=96.15 E-value=0.025 Score=50.24 Aligned_cols=82 Identities=18% Similarity=0.182 Sum_probs=56.1
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCccc-cccc--cceeeeEEEEEEEC-------------C---eEEEEEEEeCCCC--
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQ--MAGLNLINKTLMVQ-------------G---ARIAFSIWDVGGD-- 157 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~--t~g~~~~~~~i~v~-------------~---~~v~l~iwD~~G~-- 157 (193)
.+++-+||.++||||||- -+...... ..+| |+..+.. .+.+. + ....+++.|++|-
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~G--iv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~ 79 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVG--VVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVK 79 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCee--EEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCC
Confidence 478999999999999999 77776654 5556 5554443 22221 1 2368899999863
Q ss_pred --CCCCcchhhh---ccCCcEEEEEEECCCh
Q 029430 158 --SRSFDHVPIA---CKDAVAILFMFDLTSR 183 (193)
Q Consensus 158 --e~~~~~~~~~---~~~a~~illvyDit~~ 183 (193)
.+-..+-..| ++.+|+++-|.|+...
T Consensus 80 GAs~GeGLGNkFL~~IRevdaI~hVVr~f~d 110 (372)
T COG0012 80 GASKGEGLGNKFLDNIREVDAIIHVVRCFGD 110 (372)
T ss_pred CcccCCCcchHHHHhhhhcCeEEEEEEecCC
Confidence 3334444444 6789999999988643
No 321
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=96.06 E-value=0.022 Score=49.75 Aligned_cols=86 Identities=14% Similarity=0.163 Sum_probs=55.6
Q ss_pred EEEECCCCCChhhHH-hhhcCccc-cccc-cceeeeEEEEEEECCeEEEEEEEeCCCCCC----CCcchhhhc---cCCc
Q 029430 103 ISLLGDCQIGKTSFV-KYVGNEQE-RSLQ-MAGLNLINKTLMVQGARIAFSIWDVGGDSR----SFDHVPIAC---KDAV 172 (193)
Q Consensus 103 ivllGd~gvGKTSLl-r~~~~~f~-~~~~-t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~----~~~~~~~~~---~~a~ 172 (193)
+=+||-+++|||||+ .+...+.. ..++ |+ +.-..-++.+++... +.+=|..|--+ -+.+-..|+ ..+.
T Consensus 199 vGLVG~PNAGKSTLL~als~AKpkVa~YaFTT-L~P~iG~v~yddf~q-~tVADiPGiI~GAh~nkGlG~~FLrHiER~~ 276 (366)
T KOG1489|consen 199 VGLVGFPNAGKSTLLNALSRAKPKVAHYAFTT-LRPHIGTVNYDDFSQ-ITVADIPGIIEGAHMNKGLGYKFLRHIERCK 276 (366)
T ss_pred cceecCCCCcHHHHHHHhhccCCcccccceee-eccccceeeccccce-eEeccCccccccccccCcccHHHHHHHHhhc
Confidence 558999999999999 88776654 3333 22 111122455555332 88999887544 223333444 4579
Q ss_pred EEEEEEECCCh---hhHHHHH
Q 029430 173 AILFMFDLTSR---CTLNRFD 190 (193)
Q Consensus 173 ~illvyDit~~---~Sf~~l~ 190 (193)
..++|.|++.. +-++.++
T Consensus 277 ~l~fVvD~s~~~~~~p~~~~~ 297 (366)
T KOG1489|consen 277 GLLFVVDLSGKQLRNPWQQLQ 297 (366)
T ss_pred eEEEEEECCCcccCCHHHHHH
Confidence 99999999998 6666554
No 322
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=95.98 E-value=0.012 Score=53.35 Aligned_cols=82 Identities=11% Similarity=0.161 Sum_probs=60.8
Q ss_pred eEEEEECCCCCChhhHH-hhhc-Cc---------------cc-----cccccceeeeEEEEEEECCeEEEEEEEeCCCCC
Q 029430 101 LKISLLGDCQIGKTSFV-KYVG-NE---------------QE-----RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~-~~---------------f~-----~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e 158 (193)
-...++--+.+|||+|. +++- +. +- +.+...|+.+.+-.++.+.....++|.||.|+|
T Consensus 13 RTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHe 92 (528)
T COG4108 13 RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHE 92 (528)
T ss_pred cceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCcc
Confidence 35678889999999999 7642 11 10 122244677766666667677999999999999
Q ss_pred CCCcchhhhccCCcEEEEEEECCC
Q 029430 159 RSFDHVPIACKDAVAILFMFDLTS 182 (193)
Q Consensus 159 ~~~~~~~~~~~~a~~illvyDit~ 182 (193)
+|..-.--.+..+|..|+|.|...
T Consensus 93 DFSEDTYRtLtAvDsAvMVIDaAK 116 (528)
T COG4108 93 DFSEDTYRTLTAVDSAVMVIDAAK 116 (528)
T ss_pred ccchhHHHHHHhhheeeEEEeccc
Confidence 987666556778999999999876
No 323
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.79 E-value=0.0064 Score=44.37 Aligned_cols=21 Identities=19% Similarity=0.270 Sum_probs=18.0
Q ss_pred EEEEECCCCCChhhHH-hhhcC
Q 029430 102 KISLLGDCQIGKTSFV-KYVGN 122 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~~ 122 (193)
+|++.|.+|+||||++ .+...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999 66553
No 324
>PRK08118 topology modulation protein; Reviewed
Probab=95.71 E-value=0.0078 Score=47.43 Aligned_cols=20 Identities=30% Similarity=0.426 Sum_probs=17.6
Q ss_pred eEEEEECCCCCChhhHH-hhh
Q 029430 101 LKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~ 120 (193)
.||+++|.+|+|||||. ++.
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~ 22 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLG 22 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 38999999999999999 554
No 325
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.64 E-value=0.0078 Score=50.66 Aligned_cols=21 Identities=19% Similarity=0.563 Sum_probs=18.4
Q ss_pred EEEECCCCCChhhHHhhhcCc
Q 029430 103 ISLLGDCQIGKTSFVKYVGNE 123 (193)
Q Consensus 103 ivllGd~gvGKTSLlr~~~~~ 123 (193)
+.++|.+|||||||++++.|-
T Consensus 32 vsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999777663
No 326
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=95.64 E-value=0.048 Score=48.11 Aligned_cols=82 Identities=16% Similarity=0.216 Sum_probs=55.2
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccc-cccc--cceeeeEEEEEEECC---------------eEEEEEEEeCCCCCC
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQ--MAGLNLINKTLMVQG---------------ARIAFSIWDVGGDSR 159 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~--t~g~~~~~~~i~v~~---------------~~v~l~iwD~~G~e~ 159 (193)
.++|+=+||.++||||||. -+.+.... ...| |+..+. -.+.+.+ ....++++|++|--+
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~--a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvk 96 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNE--ARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVK 96 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceecccc--ceeecCchHHHHHHHhcCCcceeeeeEEEEeeccccc
Confidence 4789999999999999999 77666655 5555 444332 3444432 347899999987432
Q ss_pred ----CCcchh---hhccCCcEEEEEEECCC
Q 029430 160 ----SFDHVP---IACKDAVAILFMFDLTS 182 (193)
Q Consensus 160 ----~~~~~~---~~~~~a~~illvyDit~ 182 (193)
-..+-. ..++.+|+++=|.+...
T Consensus 97 GAs~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 97 GASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred CcccCcCchHHHHHhhhhccceeEEEEecC
Confidence 233333 34677899888877644
No 327
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=95.63 E-value=0.013 Score=49.87 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=19.0
Q ss_pred EEEECCCCCChhhHHhhhcCcc
Q 029430 103 ISLLGDCQIGKTSFVKYVGNEQ 124 (193)
Q Consensus 103 ivllGd~gvGKTSLlr~~~~~f 124 (193)
++++|.+|+|||+++++++.-.
T Consensus 30 ~vliGpSGsGKTTtLkMINrLi 51 (309)
T COG1125 30 LVLIGPSGSGKTTTLKMINRLI 51 (309)
T ss_pred EEEECCCCCcHHHHHHHHhccc
Confidence 6899999999999997776644
No 328
>PRK07261 topology modulation protein; Provisional
Probab=95.63 E-value=0.0084 Score=47.37 Aligned_cols=20 Identities=30% Similarity=0.582 Sum_probs=17.8
Q ss_pred eEEEEECCCCCChhhHH-hhh
Q 029430 101 LKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~ 120 (193)
.||+++|.+|+|||||. .+.
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~ 21 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLS 21 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHH
Confidence 37999999999999999 754
No 329
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.58 E-value=0.0081 Score=44.98 Aligned_cols=18 Identities=28% Similarity=0.416 Sum_probs=16.6
Q ss_pred EEEECCCCCChhhHH-hhh
Q 029430 103 ISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 103 ivllGd~gvGKTSLl-r~~ 120 (193)
|+|+|.+|+|||+|+ .+.
T Consensus 2 ii~~G~pgsGKSt~a~~l~ 20 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLA 20 (143)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 689999999999999 776
No 330
>COG1162 Predicted GTPases [General function prediction only]
Probab=95.55 E-value=0.013 Score=50.71 Aligned_cols=21 Identities=24% Similarity=0.518 Sum_probs=18.6
Q ss_pred EEEEECCCCCChhhHH-hhhcC
Q 029430 102 KISLLGDCQIGKTSFV-KYVGN 122 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~~ 122 (193)
-.+++|.+|||||||+ ++..+
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~ 187 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPE 187 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCch
Confidence 5789999999999999 88763
No 331
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=95.51 E-value=0.025 Score=54.24 Aligned_cols=83 Identities=12% Similarity=0.103 Sum_probs=61.8
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCc--------------cc---cccccceeeeEEEEEEECCe-EEEEEEEeCCCCCCC
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNE--------------QE---RSLQMAGLNLINKTLMVQGA-RIAFSIWDVGGDSRS 160 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~--------------f~---~~~~t~g~~~~~~~i~v~~~-~v~l~iwD~~G~e~~ 160 (193)
--+|-++|--..|||||. +++... +. +.....|+.+.+..+.+.-+ .+.+++.||.|+-+|
T Consensus 10 ~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHVDF 89 (697)
T COG0480 10 IRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHVDF 89 (697)
T ss_pred ceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCcccc
Confidence 457999999999999999 876321 11 11223355554444444333 589999999999999
Q ss_pred CcchhhhccCCcEEEEEEECCC
Q 029430 161 FDHVPIACKDAVAILFMFDLTS 182 (193)
Q Consensus 161 ~~~~~~~~~~a~~illvyDit~ 182 (193)
.......++-.|++|+|+|...
T Consensus 90 t~EV~rslrvlDgavvVvdave 111 (697)
T COG0480 90 TIEVERSLRVLDGAVVVVDAVE 111 (697)
T ss_pred HHHHHHHHHhhcceEEEEECCC
Confidence 9988889999999999999875
No 332
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.46 E-value=0.012 Score=42.24 Aligned_cols=25 Identities=20% Similarity=0.178 Sum_probs=20.0
Q ss_pred eEEEEECCCCCChhhHH-hhhcCccc
Q 029430 101 LKISLLGDCQIGKTSFV-KYVGNEQE 125 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~~~f~ 125 (193)
-.++++|++|+|||+++ .+...-..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCC
Confidence 46899999999999999 76654433
No 333
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.40 E-value=0.011 Score=47.40 Aligned_cols=22 Identities=27% Similarity=0.502 Sum_probs=19.1
Q ss_pred eEEEEECCCCCChhhHH-hhhcC
Q 029430 101 LKISLLGDCQIGKTSFV-KYVGN 122 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~~ 122 (193)
.||+++|.+|+||||+. ++...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999 66654
No 334
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=95.40 E-value=0.01 Score=52.19 Aligned_cols=20 Identities=25% Similarity=0.619 Sum_probs=17.2
Q ss_pred EEEECCCCCChhhHHhhhcC
Q 029430 103 ISLLGDCQIGKTSFVKYVGN 122 (193)
Q Consensus 103 ivllGd~gvGKTSLlr~~~~ 122 (193)
++++|++|||||||+|.+.|
T Consensus 32 ~vllGPSGcGKSTlLr~IAG 51 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAG 51 (338)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 89999999999999955544
No 335
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.38 E-value=0.0081 Score=46.54 Aligned_cols=21 Identities=24% Similarity=0.474 Sum_probs=15.9
Q ss_pred EEEEECCCCCChhhHH-hhhcC
Q 029430 102 KISLLGDCQIGKTSFV-KYVGN 122 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~~ 122 (193)
||++.|.+++|||||+ .+...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999 77644
No 336
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=95.32 E-value=0.03 Score=52.06 Aligned_cols=82 Identities=13% Similarity=0.217 Sum_probs=59.8
Q ss_pred eEEEEECCCCCChhhHH-hhhcCc-----------cc---cccccceeeeEEEEEEE---CCeEEEEEEEeCCCCCCCCc
Q 029430 101 LKISLLGDCQIGKTSFV-KYVGNE-----------QE---RSLQMAGLNLINKTLMV---QGARIAFSIWDVGGDSRSFD 162 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~~~-----------f~---~~~~t~g~~~~~~~i~v---~~~~v~l~iwD~~G~e~~~~ 162 (193)
-++.++---.=|||+|. |++.-. +. +.+...|+.+..++..+ +|+.+.+++.||.|+-+|..
T Consensus 61 RNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs~ 140 (650)
T KOG0462|consen 61 RNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSG 140 (650)
T ss_pred cceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccccc
Confidence 35667777778999999 886421 11 11223455555555433 57779999999999999988
Q ss_pred chhhhccCCcEEEEEEECCC
Q 029430 163 HVPIACKDAVAILFMFDLTS 182 (193)
Q Consensus 163 ~~~~~~~~a~~illvyDit~ 182 (193)
...--+.-.+|+|+|.|...
T Consensus 141 EVsRslaac~G~lLvVDA~q 160 (650)
T KOG0462|consen 141 EVSRSLAACDGALLVVDASQ 160 (650)
T ss_pred eehehhhhcCceEEEEEcCc
Confidence 87777888999999999876
No 337
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=95.31 E-value=0.038 Score=43.87 Aligned_cols=21 Identities=24% Similarity=0.453 Sum_probs=18.9
Q ss_pred EEEECCCCCChhhHH-hhhcCc
Q 029430 103 ISLLGDCQIGKTSFV-KYVGNE 123 (193)
Q Consensus 103 ivllGd~gvGKTSLl-r~~~~~ 123 (193)
|+++|.+||||++|+ +++...
T Consensus 5 ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 5 IVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred EEEECCCCCCHHHHHHHHHhcC
Confidence 799999999999999 887773
No 338
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.30 E-value=0.013 Score=42.94 Aligned_cols=18 Identities=33% Similarity=0.386 Sum_probs=15.9
Q ss_pred EEEECCCCCChhhHH-hhh
Q 029430 103 ISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 103 ivllGd~gvGKTSLl-r~~ 120 (193)
|++.|++|+|||+++ .+.
T Consensus 1 ill~G~~G~GKT~l~~~la 19 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALA 19 (132)
T ss_dssp EEEESSTTSSHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHH
Confidence 689999999999999 554
No 339
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=95.28 E-value=0.024 Score=52.29 Aligned_cols=55 Identities=18% Similarity=0.302 Sum_probs=45.6
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCccccccccceeeeEEEEEEECCeEEEEEEEeCCCC
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 157 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f~~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~ 157 (193)
.+-|=+||=++|||||+| .+++.+-.....|-|-.-+-.++.++. .+.+.|+.|-
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls~---~v~LCDCPGL 369 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLSP---SVCLCDCPGL 369 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcCC---CceecCCCCc
Confidence 578889999999999999 999999887777777666667777765 5678999984
No 340
>PF05729 NACHT: NACHT domain
Probab=95.27 E-value=0.012 Score=44.64 Aligned_cols=20 Identities=20% Similarity=0.388 Sum_probs=17.5
Q ss_pred EEEECCCCCChhhHH-hhhcC
Q 029430 103 ISLLGDCQIGKTSFV-KYVGN 122 (193)
Q Consensus 103 ivllGd~gvGKTSLl-r~~~~ 122 (193)
+++.|++|+|||+++ +++..
T Consensus 3 l~I~G~~G~GKStll~~~~~~ 23 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQ 23 (166)
T ss_pred EEEECCCCCChHHHHHHHHHH
Confidence 689999999999999 77654
No 341
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.26 E-value=0.011 Score=44.38 Aligned_cols=18 Identities=28% Similarity=0.468 Sum_probs=16.1
Q ss_pred EEEECCCCCChhhHH-hhh
Q 029430 103 ISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 103 ivllGd~gvGKTSLl-r~~ 120 (193)
|+++|++|+|||+|+ .+.
T Consensus 2 vlL~G~~G~GKt~l~~~la 20 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELA 20 (139)
T ss_dssp EEEEESSSSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 799999999999999 554
No 342
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=95.21 E-value=0.011 Score=45.88 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=15.0
Q ss_pred eEEEEECCCCCChhhHH-hhhc
Q 029430 101 LKISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~ 121 (193)
--+++.|++|+|||+|+ ++..
T Consensus 25 ~~~ll~G~~G~GKT~ll~~~~~ 46 (185)
T PF13191_consen 25 RNLLLTGESGSGKTSLLRALLD 46 (185)
T ss_dssp --EEE-B-TTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999 7653
No 343
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=95.18 E-value=0.092 Score=49.05 Aligned_cols=85 Identities=14% Similarity=0.241 Sum_probs=59.1
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcC--------------------ccc----------cccccceeeeEEEEEEECCeE
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGN--------------------EQE----------RSLQMAGLNLINKTLMVQGAR 146 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~--------------------~f~----------~~~~t~g~~~~~~~i~v~~~~ 146 (193)
...+.++++|.-.+||++|. +++.+ .+. +.+.-.|+....++..++...
T Consensus 175 k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~ 254 (603)
T KOG0458|consen 175 KDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKS 254 (603)
T ss_pred ccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCc
Confidence 45789999999999999999 87652 110 011122444444555556667
Q ss_pred EEEEEEeCCCCCCCCcchhhhccCCcEEEEEEECCC
Q 029430 147 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTS 182 (193)
Q Consensus 147 v~l~iwD~~G~e~~~~~~~~~~~~a~~illvyDit~ 182 (193)
..+.|.|..|+..|..-.-.-...||+.+||.|.+-
T Consensus 255 ~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~ 290 (603)
T KOG0458|consen 255 KIVTLIDAPGHKDFIPNMISGASQADVAVLVVDAST 290 (603)
T ss_pred eeEEEecCCCccccchhhhccccccceEEEEEECCc
Confidence 889999999977766544444566899999999764
No 344
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=95.14 E-value=0.024 Score=40.38 Aligned_cols=78 Identities=17% Similarity=0.151 Sum_probs=45.6
Q ss_pred EEEEC-CCCCChhhHH-hhhcCccccccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEEEEC
Q 029430 103 ISLLG-DCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDL 180 (193)
Q Consensus 103 ivllG-d~gvGKTSLl-r~~~~~f~~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illvyDi 180 (193)
|++.| .+|+|||++. .+..- +.. .|..+ ..+..|.. +.+.|.|+++.... .....+..+|.++++.+.
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~-~~~----~~~~v--l~~d~d~~-~d~viiD~p~~~~~--~~~~~l~~ad~viv~~~~ 71 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAA-LAR----RGKRV--LLIDLDPQ-YDYIIIDTPPSLGL--LTRNALAAADLVLIPVQP 71 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHH-HHh----CCCcE--EEEeCCCC-CCEEEEeCcCCCCH--HHHHHHHHCCEEEEeccC
Confidence 45666 6899999988 54321 111 11111 12222322 77889999886532 233567788999988865
Q ss_pred CChhhHHHHHh
Q 029430 181 TSRCTLNRFDH 191 (193)
Q Consensus 181 t~~~Sf~~l~~ 191 (193)
+..+++.+.+
T Consensus 72 -~~~s~~~~~~ 81 (104)
T cd02042 72 -SPLDLDGLEK 81 (104)
T ss_pred -CHHHHHHHHH
Confidence 4445555443
No 345
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=95.13 E-value=0.014 Score=51.65 Aligned_cols=20 Identities=30% Similarity=0.677 Sum_probs=17.4
Q ss_pred EEEECCCCCChhhHHhhhcC
Q 029430 103 ISLLGDCQIGKTSFVKYVGN 122 (193)
Q Consensus 103 ivllGd~gvGKTSLlr~~~~ 122 (193)
+.++|++|||||||+|.+.|
T Consensus 34 ~~lLGPSGcGKTTlLR~IAG 53 (352)
T COG3842 34 VTLLGPSGCGKTTLLRMIAG 53 (352)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 67999999999999966655
No 346
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=95.09 E-value=0.013 Score=43.06 Aligned_cols=22 Identities=18% Similarity=0.289 Sum_probs=17.6
Q ss_pred EEEEECCCCCChhhHH-hhhcCc
Q 029430 102 KISLLGDCQIGKTSFV-KYVGNE 123 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~~~ 123 (193)
=+++.|++|+|||+++ ++....
T Consensus 6 ~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 6 ILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp -EEEEE-TTSSHHHHHHHHHHHH
T ss_pred ccEEEcCCCCCHHHHHHHHHHHh
Confidence 3789999999999999 887654
No 347
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=95.07 E-value=0.05 Score=50.75 Aligned_cols=87 Identities=13% Similarity=0.168 Sum_probs=61.5
Q ss_pred EEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEE-CCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEEEE
Q 029430 103 ISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMV-QGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD 179 (193)
Q Consensus 103 ivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v-~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illvyD 179 (193)
|.++|--.=|||||+ .|-+...- ...--+...+..-++.+ +| -++.+.||.|+.-|..|+.-=-+-+|.++||..
T Consensus 156 VTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G--~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVA 233 (683)
T KOG1145|consen 156 VTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSG--KSITFLDTPGHAAFSAMRARGANVTDIVVLVVA 233 (683)
T ss_pred EEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCC--CEEEEecCCcHHHHHHHHhccCccccEEEEEEE
Confidence 678999999999999 77655444 11111111222234444 44 567899999999999999877777899999996
Q ss_pred CCC---hhhHHHHHh
Q 029430 180 LTS---RCTLNRFDH 191 (193)
Q Consensus 180 it~---~~Sf~~l~~ 191 (193)
..| ++|.|.|++
T Consensus 234 adDGVmpQT~EaIkh 248 (683)
T KOG1145|consen 234 ADDGVMPQTLEAIKH 248 (683)
T ss_pred ccCCccHhHHHHHHH
Confidence 666 788887764
No 348
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.05 E-value=0.025 Score=47.55 Aligned_cols=21 Identities=14% Similarity=0.518 Sum_probs=17.9
Q ss_pred EEEEECCCCCChhhHHhhhcC
Q 029430 102 KISLLGDCQIGKTSFVKYVGN 122 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~ 122 (193)
-|+++|++|+|||||+|-+++
T Consensus 32 ~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 389999999999999965555
No 349
>PRK06217 hypothetical protein; Validated
Probab=95.02 E-value=0.019 Score=45.56 Aligned_cols=21 Identities=19% Similarity=0.362 Sum_probs=18.5
Q ss_pred eEEEEECCCCCChhhHH-hhhc
Q 029430 101 LKISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~ 121 (193)
.||+|+|.+|+|||||. ++..
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~ 23 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAE 23 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 47999999999999999 7654
No 350
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=94.80 E-value=0.021 Score=41.58 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=18.2
Q ss_pred eEEEEECCCCCChhhHH-hhhcC
Q 029430 101 LKISLLGDCQIGKTSFV-KYVGN 122 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~~ 122 (193)
--+++.|++|+|||+|+ .+...
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~ 42 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANE 42 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999 66543
No 351
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.77 E-value=0.051 Score=43.78 Aligned_cols=22 Identities=23% Similarity=0.363 Sum_probs=18.5
Q ss_pred EEEEECCCCCChhhHHhhhcCc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNE 123 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~ 123 (193)
.+.++|++|+|||+|++.+.+.
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 35 MVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred EEEEECCCCCCHHHHHHHhccc
Confidence 6889999999999999555554
No 352
>PRK13695 putative NTPase; Provisional
Probab=94.75 E-value=0.022 Score=44.69 Aligned_cols=20 Identities=40% Similarity=0.644 Sum_probs=17.9
Q ss_pred eEEEEECCCCCChhhHH-hhh
Q 029430 101 LKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~ 120 (193)
+|+.+.|++|+|||+|+ .+.
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~ 21 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIA 21 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999 754
No 353
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.75 E-value=0.024 Score=47.18 Aligned_cols=20 Identities=15% Similarity=0.504 Sum_probs=16.9
Q ss_pred EEEEECCCCCChhhHHhhhc
Q 029430 102 KISLLGDCQIGKTSFVKYVG 121 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~ 121 (193)
.++++|++|+|||||+|-++
T Consensus 30 vv~iiGpSGSGKSTlLRclN 49 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLN 49 (240)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999994343
No 354
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.74 E-value=0.05 Score=45.03 Aligned_cols=22 Identities=23% Similarity=0.487 Sum_probs=18.2
Q ss_pred EEEEECCCCCChhhHHhhhcCc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNE 123 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~ 123 (193)
.+.++|++|+|||+|++.+.+.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (246)
T PRK14269 30 ITALIGASGCGKSTFLRCFNRM 51 (246)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5889999999999999555543
No 355
>PRK14738 gmk guanylate kinase; Provisional
Probab=94.73 E-value=0.04 Score=44.75 Aligned_cols=24 Identities=17% Similarity=0.339 Sum_probs=20.0
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcC
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGN 122 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~ 122 (193)
...-|+++|.+|+|||||+ .+...
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 4567889999999999999 87643
No 356
>PF13479 AAA_24: AAA domain
Probab=94.66 E-value=0.024 Score=46.25 Aligned_cols=20 Identities=30% Similarity=0.453 Sum_probs=18.8
Q ss_pred eeEEEEECCCCCChhhHH-hh
Q 029430 100 SLKISLLGDCQIGKTSFV-KY 119 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~ 119 (193)
.+|+++.|++|+|||+|+ .+
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC
Confidence 689999999999999999 77
No 357
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=94.64 E-value=0.026 Score=42.04 Aligned_cols=23 Identities=17% Similarity=0.348 Sum_probs=18.7
Q ss_pred EEEEECCCCCChhhHHhhhcCcc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNEQ 124 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~f 124 (193)
.+.++|..|+|||+|++.+.+..
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 68999999999999995554543
No 358
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=94.61 E-value=0.041 Score=50.41 Aligned_cols=85 Identities=15% Similarity=0.147 Sum_probs=54.7
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcC---ccc-cc--cccceeeeEEEE----------E---EEC-C----e-------
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGN---EQE-RS--LQMAGLNLINKT----------L---MVQ-G----A------- 145 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~---~f~-~~--~~t~g~~~~~~~----------i---~v~-~----~------- 145 (193)
...+.|.++|.-..|||||+ .+.+- ++. +. .-|+..-|.... . .++ + .
T Consensus 32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (460)
T PTZ00327 32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH 111 (460)
T ss_pred CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence 45789999999999999999 77642 222 11 113222221110 0 011 0 0
Q ss_pred ----EEEEEEEeCCCCCCCCcchhhhccCCcEEEEEEECCC
Q 029430 146 ----RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTS 182 (193)
Q Consensus 146 ----~v~l~iwD~~G~e~~~~~~~~~~~~a~~illvyDit~ 182 (193)
...+.+.|+.|+++|....-.-...+|++++|.|.++
T Consensus 112 ~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~ 152 (460)
T PTZ00327 112 KMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANE 152 (460)
T ss_pred cccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCC
Confidence 1368899999999886555555678999999999986
No 359
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=94.58 E-value=0.058 Score=44.05 Aligned_cols=23 Identities=22% Similarity=0.462 Sum_probs=18.9
Q ss_pred EEEEECCCCCChhhHHhhhcCcc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNEQ 124 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~f 124 (193)
.+.++|.+|+|||||++.+.+..
T Consensus 35 ~~~l~G~nGsGKSTLlk~l~G~~ 57 (226)
T cd03234 35 VMAILGSSGSGKTTLLDAISGRV 57 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhCcc
Confidence 58999999999999995555543
No 360
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=94.57 E-value=0.058 Score=44.93 Aligned_cols=23 Identities=17% Similarity=0.121 Sum_probs=18.9
Q ss_pred EEEEECCCCCChhhHHhhhcCcc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNEQ 124 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~f 124 (193)
.+.++|.+|+|||||++.+.+..
T Consensus 31 ~~~l~G~nGsGKSTLl~~l~Gl~ 53 (254)
T PRK10418 31 VLALVGGSGSGKSLTCAAALGIL 53 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999995555543
No 361
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=94.55 E-value=0.029 Score=44.61 Aligned_cols=20 Identities=30% Similarity=0.351 Sum_probs=17.4
Q ss_pred EEEEECCCCCChhhHH-hhhc
Q 029430 102 KISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~ 121 (193)
.++|+|.+|+|||||+ .+..
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~ 24 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQ 24 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 6899999999999999 6643
No 362
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=94.50 E-value=0.028 Score=43.97 Aligned_cols=21 Identities=24% Similarity=0.468 Sum_probs=18.1
Q ss_pred EEEEECCCCCChhhHH-hhhcC
Q 029430 102 KISLLGDCQIGKTSFV-KYVGN 122 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~~ 122 (193)
.|+|+|.+|+|||||+ .+...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 5899999999999999 76653
No 363
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.47 E-value=0.026 Score=46.56 Aligned_cols=21 Identities=24% Similarity=0.510 Sum_probs=17.8
Q ss_pred EEEEECCCCCChhhHHhhhcC
Q 029430 102 KISLLGDCQIGKTSFVKYVGN 122 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~ 122 (193)
-+|++|.+|||||||+.++.+
T Consensus 33 ~vv~lGpSGcGKTTLLnl~AG 53 (259)
T COG4525 33 LVVVLGPSGCGKTTLLNLIAG 53 (259)
T ss_pred EEEEEcCCCccHHHHHHHHhc
Confidence 489999999999999965555
No 364
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=94.46 E-value=0.1 Score=47.87 Aligned_cols=81 Identities=17% Similarity=0.239 Sum_probs=61.8
Q ss_pred EEEEECCCCCChhhHH-hhhcC--ccccc-------------cccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchh
Q 029430 102 KISLLGDCQIGKTSFV-KYVGN--EQERS-------------LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVP 165 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~~--~f~~~-------------~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~ 165 (193)
+|.++---.=|||+|+ .++.. .|.+. +...|+.+..|...++-+.+.++|.||.|+-.|..-.+
T Consensus 7 NIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEVE 86 (603)
T COG1217 7 NIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEVE 86 (603)
T ss_pred eeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchhh
Confidence 5777777788999999 88753 33311 11336666666666665669999999999999999888
Q ss_pred hhccCCcEEEEEEECCC
Q 029430 166 IACKDAVAILFMFDLTS 182 (193)
Q Consensus 166 ~~~~~a~~illvyDit~ 182 (193)
-.+.=.|++|++.|..+
T Consensus 87 Rvl~MVDgvlLlVDA~E 103 (603)
T COG1217 87 RVLSMVDGVLLLVDASE 103 (603)
T ss_pred hhhhhcceEEEEEEccc
Confidence 88888999999999865
No 365
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.43 E-value=0.03 Score=42.63 Aligned_cols=20 Identities=25% Similarity=0.571 Sum_probs=17.1
Q ss_pred EEEECCCCCChhhHH-hhhcC
Q 029430 103 ISLLGDCQIGKTSFV-KYVGN 122 (193)
Q Consensus 103 ivllGd~gvGKTSLl-r~~~~ 122 (193)
|+++|.+|+|||+|+ .+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999 66643
No 366
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.43 E-value=0.062 Score=48.81 Aligned_cols=21 Identities=29% Similarity=0.227 Sum_probs=18.4
Q ss_pred eeEEEEECCCCCChhhHH-hhh
Q 029430 100 SLKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~ 120 (193)
..-|+++|.+||||||++ ++.
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA 121 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLA 121 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 357999999999999999 775
No 367
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=94.41 E-value=0.092 Score=35.72 Aligned_cols=67 Identities=15% Similarity=0.235 Sum_probs=41.9
Q ss_pred EEEECCCCCChhhHH-hhhcCccccccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcc-hhhhccCCcEEEEEEEC
Q 029430 103 ISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH-VPIACKDAVAILFMFDL 180 (193)
Q Consensus 103 ivllGd~gvGKTSLl-r~~~~~f~~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~-~~~~~~~a~~illvyDi 180 (193)
+++.|..|+|||++. .+... +.+ .|. +.+.++ .+.+.|+++.-..... .......++.++++.+.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~-l~~----~g~----~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~ 68 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAA-LAK----RGK----RVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTP 68 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHH-HHH----CCC----eEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCC
Confidence 678899999999998 65432 111 111 223334 6889999876543331 13456678888888766
Q ss_pred CC
Q 029430 181 TS 182 (193)
Q Consensus 181 t~ 182 (193)
..
T Consensus 69 ~~ 70 (99)
T cd01983 69 EA 70 (99)
T ss_pred ch
Confidence 54
No 368
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=94.39 E-value=0.028 Score=40.85 Aligned_cols=20 Identities=25% Similarity=0.297 Sum_probs=16.9
Q ss_pred EEEECCCCCChhhHH-hhhcC
Q 029430 103 ISLLGDCQIGKTSFV-KYVGN 122 (193)
Q Consensus 103 ivllGd~gvGKTSLl-r~~~~ 122 (193)
|+|.|.+||||||++ .+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999 65544
No 369
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=94.39 E-value=0.032 Score=45.26 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=19.5
Q ss_pred eEEEEECCCCCChhhHH-hhhcC
Q 029430 101 LKISLLGDCQIGKTSFV-KYVGN 122 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~~ 122 (193)
+|+.++|..|+|||||+ ++++.
T Consensus 2 ~~i~i~G~~GsGKTTll~~l~~~ 24 (199)
T TIGR00101 2 LKIGVAGPVGSGKTALIEALTRA 24 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 68999999999999999 87653
No 370
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=94.39 E-value=0.026 Score=45.76 Aligned_cols=20 Identities=35% Similarity=0.544 Sum_probs=17.5
Q ss_pred eEEEEECCCCCChhhHH-hhh
Q 029430 101 LKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~ 120 (193)
..++++|..||||||.+ ++.
T Consensus 2 ~vi~lvGptGvGKTTt~aKLA 22 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLA 22 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHH
Confidence 36899999999999999 764
No 371
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=94.35 E-value=0.037 Score=36.86 Aligned_cols=19 Identities=16% Similarity=0.219 Sum_probs=16.5
Q ss_pred EEEEECCCCCChhhHH-hhh
Q 029430 102 KISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~ 120 (193)
-.++.|+.|+|||||+ -+.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 3889999999999999 654
No 372
>PRK14737 gmk guanylate kinase; Provisional
Probab=94.32 E-value=0.032 Score=44.83 Aligned_cols=20 Identities=10% Similarity=0.182 Sum_probs=18.2
Q ss_pred EEEECCCCCChhhHH-hhhcC
Q 029430 103 ISLLGDCQIGKTSFV-KYVGN 122 (193)
Q Consensus 103 ivllGd~gvGKTSLl-r~~~~ 122 (193)
|+|+|++|+|||+|+ +++..
T Consensus 7 ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 7 FIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 899999999999999 88764
No 373
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.26 E-value=0.032 Score=43.75 Aligned_cols=20 Identities=20% Similarity=0.287 Sum_probs=17.1
Q ss_pred EEEEECCCCCChhhHH-hhhc
Q 029430 102 KISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~ 121 (193)
-++++|.+|+|||+|+ .+..
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~ 23 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARA 23 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999 6544
No 374
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=94.16 E-value=0.046 Score=47.17 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=19.8
Q ss_pred eeeEEEEECCCCCChhhHH-hhhc
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~ 121 (193)
...-|+++|-.|+|||+|+ |+..
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~ 41 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNS 41 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHH
Confidence 3567999999999999999 8754
No 375
>PRK03839 putative kinase; Provisional
Probab=94.16 E-value=0.035 Score=43.64 Aligned_cols=20 Identities=25% Similarity=0.338 Sum_probs=17.5
Q ss_pred EEEEECCCCCChhhHH-hhhc
Q 029430 102 KISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~ 121 (193)
+|+++|.+|+||||+. ++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~ 22 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAE 22 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 6999999999999999 6543
No 376
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=94.16 E-value=0.036 Score=46.61 Aligned_cols=23 Identities=17% Similarity=0.465 Sum_probs=19.9
Q ss_pred eeEEEEECCCCCChhhHH-hhhcC
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGN 122 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~ 122 (193)
.++++++|.+|+|||+|+ .++..
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHh
Confidence 589999999999999999 66643
No 377
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.15 E-value=0.039 Score=36.92 Aligned_cols=19 Identities=26% Similarity=0.459 Sum_probs=16.3
Q ss_pred EEEECCCCCChhhHH-hhhc
Q 029430 103 ISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 103 ivllGd~gvGKTSLl-r~~~ 121 (193)
|++.|.+|+|||++. .+..
T Consensus 2 i~i~G~~gsGKst~~~~l~~ 21 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAE 21 (69)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 678999999999999 6553
No 378
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=94.13 E-value=0.041 Score=44.51 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=18.3
Q ss_pred EEEEECCCCCChhhHHhhhcCc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNE 123 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~ 123 (193)
.+.++|++|+|||||++.+.+.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999555453
No 379
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=94.06 E-value=0.09 Score=43.94 Aligned_cols=23 Identities=22% Similarity=0.421 Sum_probs=19.1
Q ss_pred EEEEECCCCCChhhHHhhhcCcc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNEQ 124 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~f 124 (193)
.+.++|..|+|||||++.+.+..
T Consensus 32 ~~~i~G~nGsGKSTLl~~i~G~~ 54 (262)
T PRK09984 32 MVALLGPSGSGKSTLLRHLSGLI 54 (262)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 68999999999999995555544
No 380
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.05 E-value=0.037 Score=44.25 Aligned_cols=21 Identities=33% Similarity=0.474 Sum_probs=17.8
Q ss_pred eEEEEECCCCCChhhHH-hhhc
Q 029430 101 LKISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~ 121 (193)
--|+++|.+|+|||+|+ .+..
T Consensus 6 ~~i~i~G~sGsGKstl~~~l~~ 27 (205)
T PRK00300 6 LLIVLSGPSGAGKSTLVKALLE 27 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999 6554
No 381
>PRK14532 adenylate kinase; Provisional
Probab=94.02 E-value=0.04 Score=43.61 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=18.1
Q ss_pred eEEEEECCCCCChhhHH-hhhc
Q 029430 101 LKISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~ 121 (193)
++|+++|.+|+|||++. ++..
T Consensus 1 ~~i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 1 MNLILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 37999999999999999 6653
No 382
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=94.02 E-value=0.084 Score=53.55 Aligned_cols=75 Identities=12% Similarity=0.061 Sum_probs=44.5
Q ss_pred EEEECCCCCChhhHH-hhhcCccc-cc----ccc--ceeee-EEEEEEECCeEEEEEEEeCCCCC--------CCCcchh
Q 029430 103 ISLLGDCQIGKTSFV-KYVGNEQE-RS----LQM--AGLNL-INKTLMVQGARIAFSIWDVGGDS--------RSFDHVP 165 (193)
Q Consensus 103 ivllGd~gvGKTSLl-r~~~~~f~-~~----~~t--~g~~~-~~~~i~v~~~~v~l~iwD~~G~e--------~~~~~~~ 165 (193)
.+|+|++|+|||||+ +. +-+|+ .. ..+ +|-.. ..+- +.+ +-.++||+|.- .....|.
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~ww--f~~---~avliDtaG~y~~~~~~~~~~~~~W~ 187 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWW--FTD---EAVLIDTAGRYTTQDSDPEEDAAAWL 187 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceE--ecC---CEEEEcCCCccccCCCcccccHHHHH
Confidence 689999999999999 55 66665 21 111 11111 1111 122 23489999832 2333454
Q ss_pred hhc---------cCCcEEEEEEECCCh
Q 029430 166 IAC---------KDAVAILFMFDLTSR 183 (193)
Q Consensus 166 ~~~---------~~a~~illvyDit~~ 183 (193)
.++ +..||+|++.|+.+-
T Consensus 188 ~fL~~L~k~R~r~plnGvil~vs~~~L 214 (1169)
T TIGR03348 188 GFLGLLRKHRRRQPLNGVVVTVSLADL 214 (1169)
T ss_pred HHHHHHHHhCCCCCCCeEEEEEEHHHH
Confidence 442 458999999998754
No 383
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.00 E-value=0.14 Score=45.99 Aligned_cols=79 Identities=18% Similarity=0.202 Sum_probs=52.3
Q ss_pred EEEEECCCCCChhhHH-hhhcCccc----cccccceeeeEEEEEEEC------Ce-------------------------
Q 029430 102 KISLLGDCQIGKTSFV-KYVGNEQE----RSLQMAGLNLINKTLMVQ------GA------------------------- 145 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~~~f~----~~~~t~g~~~~~~~i~v~------~~------------------------- 145 (193)
=|+++|.-..|||||+ .++.++|. ..+||.. .....+.-+ |.
T Consensus 60 mill~GqyStGKTtfi~yLle~dypg~riGpEPTtd--~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~ 137 (532)
T KOG1954|consen 60 MILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTD--RFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFM 137 (532)
T ss_pred eEEEEeccccchhHHHHHHHhCCCCccccCCCCCcc--eeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHH
Confidence 4889999999999999 88888887 2334442 211111111 11
Q ss_pred --------EEEEEEEeCCCCCC-----------CCcchhhhccCCcEEEEEEECCC
Q 029430 146 --------RIAFSIWDVGGDSR-----------SFDHVPIACKDAVAILFMFDLTS 182 (193)
Q Consensus 146 --------~v~l~iwD~~G~e~-----------~~~~~~~~~~~a~~illvyDit~ 182 (193)
-=+++|.||.|.-. |....+-|...+|-||++||...
T Consensus 138 csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hK 193 (532)
T KOG1954|consen 138 CSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHK 193 (532)
T ss_pred HhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhh
Confidence 01678999987421 33455667788999999998765
No 384
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.00 E-value=0.035 Score=42.65 Aligned_cols=19 Identities=26% Similarity=0.606 Sum_probs=17.0
Q ss_pred EEEECCCCCChhhHH-hhhc
Q 029430 103 ISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 103 ivllGd~gvGKTSLl-r~~~ 121 (193)
|.++|..++|||||+ .+++
T Consensus 3 v~VvG~~~sGKTTl~~~Li~ 22 (140)
T PF03205_consen 3 VQVVGPKNSGKTTLIRKLIN 22 (140)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 789999999999999 7764
No 385
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=93.99 E-value=0.094 Score=41.96 Aligned_cols=22 Identities=14% Similarity=0.403 Sum_probs=18.3
Q ss_pred EEEEECCCCCChhhHHhhhcCc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNE 123 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~ 123 (193)
.+.++|..|+|||+|++.+.+.
T Consensus 37 ~~~l~G~nGsGKStLl~~i~Gl 58 (194)
T cd03213 37 LTAIMGPSGAGKSTLLNALAGR 58 (194)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999555554
No 386
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=93.99 E-value=0.07 Score=50.80 Aligned_cols=23 Identities=13% Similarity=0.343 Sum_probs=19.5
Q ss_pred EEEEECCCCCChhhHHhhhcCcc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNEQ 124 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~f 124 (193)
|+.++|.+|+|||||++++.+.+
T Consensus 481 ~vaIvG~sGsGKSTLlklL~gl~ 503 (686)
T TIGR03797 481 FVAIVGPSGSGKSTLLRLLLGFE 503 (686)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999996665544
No 387
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=93.99 E-value=0.042 Score=40.53 Aligned_cols=20 Identities=30% Similarity=0.609 Sum_probs=17.4
Q ss_pred eEEEEECCCCCChhhHH-hhh
Q 029430 101 LKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~ 120 (193)
-.++++|++|+|||+|+ .+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 35899999999999999 655
No 388
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=93.93 E-value=0.041 Score=45.83 Aligned_cols=21 Identities=19% Similarity=0.555 Sum_probs=17.5
Q ss_pred EEEEECCCCCChhhHHhhhcC
Q 029430 102 KISLLGDCQIGKTSFVKYVGN 122 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~ 122 (193)
-+.++|++|+|||||+..+++
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999955544
No 389
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=93.89 E-value=0.036 Score=44.25 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=19.2
Q ss_pred eEEEEECCCCCChhhHH-hhhcCc
Q 029430 101 LKISLLGDCQIGKTSFV-KYVGNE 123 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~~~ 123 (193)
--++|.|+.|+|||||+ .++...
T Consensus 21 ~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 21 QHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHC
T ss_pred cEEEEEcCCcCCHHHHHHHHHHHh
Confidence 35788899999999999 887644
No 390
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=93.89 E-value=0.048 Score=43.93 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=18.3
Q ss_pred EEEEECCCCCChhhHHhhhcCc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNE 123 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~ 123 (193)
.+.++|.+|+|||||++.+.+.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999555554
No 391
>PRK08233 hypothetical protein; Provisional
Probab=93.87 E-value=0.043 Score=42.70 Aligned_cols=21 Identities=19% Similarity=0.195 Sum_probs=17.5
Q ss_pred eEEEEECCCCCChhhHH-hhhc
Q 029430 101 LKISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~ 121 (193)
.-|.+.|.+|+|||||. ++..
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~ 25 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTH 25 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 45777899999999999 7654
No 392
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=93.84 E-value=0.049 Score=44.22 Aligned_cols=22 Identities=18% Similarity=0.416 Sum_probs=18.6
Q ss_pred EEEEECCCCCChhhHHhhhcCc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNE 123 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~ 123 (193)
.+.++|.+|+|||||++.+.+.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G~ 54 (228)
T cd03257 33 TLGLVGESGSGKSTLARAILGL 54 (228)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999555554
No 393
>PRK14530 adenylate kinase; Provisional
Probab=93.83 E-value=0.045 Score=44.52 Aligned_cols=20 Identities=30% Similarity=0.321 Sum_probs=17.6
Q ss_pred eEEEEECCCCCChhhHH-hhh
Q 029430 101 LKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~ 120 (193)
-+|+++|.+|+||||+. ++.
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La 24 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLA 24 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 37999999999999999 654
No 394
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=93.83 E-value=0.047 Score=43.32 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=18.1
Q ss_pred EEEEECCCCCChhhHHhhhcCc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNE 123 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~ 123 (193)
.+.++|..|+|||||++.+.+.
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999555443
No 395
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=93.82 E-value=0.11 Score=39.72 Aligned_cols=21 Identities=33% Similarity=0.453 Sum_probs=17.9
Q ss_pred EEEEECCCCCChhhHH-hhhcC
Q 029430 102 KISLLGDCQIGKTSFV-KYVGN 122 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~~ 122 (193)
-|++.|+.|+|||+|+ .+...
T Consensus 24 ~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 24 VVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5889999999999999 66554
No 396
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=93.82 E-value=0.045 Score=42.84 Aligned_cols=19 Identities=32% Similarity=0.317 Sum_probs=17.1
Q ss_pred EEEEECCCCCChhhHH-hhh
Q 029430 102 KISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~ 120 (193)
.|+++|.+|+||||++ ++.
T Consensus 5 ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 5889999999999999 775
No 397
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=93.80 E-value=0.095 Score=44.20 Aligned_cols=22 Identities=18% Similarity=0.472 Sum_probs=18.1
Q ss_pred EEEEECCCCCChhhHHhhhcCc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNE 123 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~ 123 (193)
.+.++|.+|+|||+|++.+.+.
T Consensus 52 ~~~I~G~nGsGKSTLl~~i~Gl 73 (271)
T PRK14238 52 VTAIIGPSGCGKSTYIKTLNRM 73 (271)
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5889999999999999555443
No 398
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.77 E-value=0.051 Score=44.12 Aligned_cols=22 Identities=32% Similarity=0.391 Sum_probs=18.3
Q ss_pred EEEEECCCCCChhhHHhhhcCc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNE 123 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~ 123 (193)
.+.++|..|+|||||++.+.+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 28 IFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999555554
No 399
>PRK02496 adk adenylate kinase; Provisional
Probab=93.76 E-value=0.051 Score=42.88 Aligned_cols=20 Identities=20% Similarity=0.260 Sum_probs=17.6
Q ss_pred eEEEEECCCCCChhhHH-hhh
Q 029430 101 LKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~ 120 (193)
.|++++|.+|+|||++. .+.
T Consensus 2 ~~i~i~G~pGsGKst~a~~la 22 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLA 22 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999 554
No 400
>PF13173 AAA_14: AAA domain
Probab=93.75 E-value=0.042 Score=40.99 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=18.9
Q ss_pred EEEECCCCCChhhHH-hhhcCcc
Q 029430 103 ISLLGDCQIGKTSFV-KYVGNEQ 124 (193)
Q Consensus 103 ivllGd~gvGKTSLl-r~~~~~f 124 (193)
+++.|..+||||+|+ +++....
T Consensus 5 ~~l~G~R~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 5 IILTGPRGVGKTTLLKQLAKDLL 27 (128)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 689999999999999 8886543
No 401
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=93.73 E-value=0.061 Score=49.48 Aligned_cols=23 Identities=17% Similarity=0.418 Sum_probs=19.2
Q ss_pred EEEEECCCCCChhhHHhhhcCcc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNEQ 124 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~f 124 (193)
|+.++|++|+|||||++++.+.+
T Consensus 363 ~vaIvG~SGsGKSTLl~lL~g~~ 385 (529)
T TIGR02868 363 RVAILGPSGSGKSTLLMLLTGLL 385 (529)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999995555544
No 402
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=93.68 E-value=0.054 Score=43.78 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=18.3
Q ss_pred EEEEECCCCCChhhHHhhhcCc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNE 123 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~ 123 (193)
.+.++|.+|+|||||++.+.+.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 33 VTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999555553
No 403
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=93.66 E-value=0.057 Score=43.56 Aligned_cols=22 Identities=18% Similarity=0.326 Sum_probs=18.4
Q ss_pred EEEEECCCCCChhhHHhhhcCc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNE 123 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~ 123 (193)
.+.++|++|+|||||++.+.+.
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 27 FLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 6899999999999999555554
No 404
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=93.64 E-value=0.058 Score=42.58 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=18.3
Q ss_pred EEEEECCCCCChhhHHhhhcCc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNE 123 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~ 123 (193)
.+.++|++|+|||||++.+.+.
T Consensus 27 ~~~l~G~nGsGKStLl~~i~G~ 48 (180)
T cd03214 27 IVGILGPNGAGKSTLLKTLAGL 48 (180)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999555553
No 405
>PRK14531 adenylate kinase; Provisional
Probab=93.61 E-value=0.053 Score=43.01 Aligned_cols=21 Identities=19% Similarity=0.308 Sum_probs=18.2
Q ss_pred eeEEEEECCCCCChhhHH-hhh
Q 029430 100 SLKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~ 120 (193)
+.+|+++|.+|+|||++. ++.
T Consensus 2 ~~~i~i~G~pGsGKsT~~~~la 23 (183)
T PRK14531 2 KQRLLFLGPPGAGKGTQAARLC 23 (183)
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 458999999999999998 654
No 406
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=93.54 E-value=0.049 Score=45.22 Aligned_cols=21 Identities=24% Similarity=0.450 Sum_probs=17.9
Q ss_pred EEEEECCCCCChhhHH-hhhcC
Q 029430 102 KISLLGDCQIGKTSFV-KYVGN 122 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~~ 122 (193)
.+++.|++|+|||+|+ .+...
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~ 66 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKR 66 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHh
Confidence 4899999999999999 76543
No 407
>PRK13949 shikimate kinase; Provisional
Probab=93.53 E-value=0.056 Score=42.62 Aligned_cols=19 Identities=32% Similarity=0.405 Sum_probs=16.8
Q ss_pred EEEEECCCCCChhhHH-hhh
Q 029430 102 KISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~ 120 (193)
||+|+|.+|+|||+|. .+.
T Consensus 3 ~I~liG~~GsGKstl~~~La 22 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALA 22 (169)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 7999999999999999 543
No 408
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.53 E-value=0.06 Score=43.17 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=18.3
Q ss_pred EEEEECCCCCChhhHHhhhcCc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNE 123 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~ 123 (193)
.+.++|++|+|||+|++.+.+.
T Consensus 29 ~~~l~G~nGsGKSTLl~~i~G~ 50 (200)
T PRK13540 29 LLHLKGSNGAGKTTLLKLIAGL 50 (200)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999555443
No 409
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=93.52 E-value=0.061 Score=43.90 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=18.9
Q ss_pred eEEEEECCCCCChhhHHhhhcCc
Q 029430 101 LKISLLGDCQIGKTSFVKYVGNE 123 (193)
Q Consensus 101 ~KivllGd~gvGKTSLlr~~~~~ 123 (193)
=.+.++|.+|+|||+|++.+.+.
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~ 49 (230)
T TIGR03410 27 EVTCVLGRNGVGKTTLLKTLMGL 49 (230)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999555554
No 410
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.52 E-value=0.063 Score=41.80 Aligned_cols=22 Identities=27% Similarity=0.450 Sum_probs=18.2
Q ss_pred EEEEECCCCCChhhHHhhhcCc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNE 123 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~ 123 (193)
.+.++|.+|+|||+|++.+.+.
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~ 49 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSGL 49 (163)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999555444
No 411
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=93.51 E-value=0.11 Score=45.17 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=17.7
Q ss_pred EEEEECCCCCChhhHHhhhcCc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNE 123 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~ 123 (193)
.+.++|.+|+|||+|++.+.+-
T Consensus 35 ~~~ivG~sGsGKSTLl~~i~Gl 56 (330)
T PRK15093 35 IRGLVGESGSGKSLIAKAICGV 56 (330)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 4889999999999999444443
No 412
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=93.51 E-value=0.054 Score=43.89 Aligned_cols=23 Identities=30% Similarity=0.560 Sum_probs=19.4
Q ss_pred eEEEEECCCCCChhhHH-hhhcCc
Q 029430 101 LKISLLGDCQIGKTSFV-KYVGNE 123 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~~~ 123 (193)
.=+++.|++|||||||+ ++....
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 34789999999999999 777655
No 413
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=93.48 E-value=0.055 Score=42.29 Aligned_cols=20 Identities=30% Similarity=0.438 Sum_probs=17.4
Q ss_pred EEEECCCCCChhhHH-hhhcC
Q 029430 103 ISLLGDCQIGKTSFV-KYVGN 122 (193)
Q Consensus 103 ivllGd~gvGKTSLl-r~~~~ 122 (193)
+++.|++|+|||+|. +|+..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~ 22 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYA 22 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 688999999999999 88653
No 414
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=93.48 E-value=0.052 Score=40.69 Aligned_cols=20 Identities=30% Similarity=0.421 Sum_probs=17.1
Q ss_pred EEEECCCCCChhhHH-hhhcC
Q 029430 103 ISLLGDCQIGKTSFV-KYVGN 122 (193)
Q Consensus 103 ivllGd~gvGKTSLl-r~~~~ 122 (193)
+++.|.+|+|||+|+ .+...
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~ 22 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALN 22 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHH
Confidence 689999999999999 77543
No 415
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=93.47 E-value=0.061 Score=44.27 Aligned_cols=23 Identities=30% Similarity=0.254 Sum_probs=19.0
Q ss_pred EEEEECCCCCChhhHHhhhcCcc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNEQ 124 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~f 124 (193)
.+.++|++|+|||+|++.+.+..
T Consensus 31 ~~~l~G~nGsGKSTLl~~l~G~~ 53 (241)
T PRK10895 31 IVGLLGPNGAGKTTTFYMVVGIV 53 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999995555543
No 416
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=93.47 E-value=0.058 Score=43.04 Aligned_cols=20 Identities=20% Similarity=0.343 Sum_probs=17.3
Q ss_pred eEEEEECCCCCChhhHH-hhh
Q 029430 101 LKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~ 120 (193)
-.+.++|++|+|||||+ ...
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 37899999999999999 543
No 417
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=93.45 E-value=0.27 Score=42.24 Aligned_cols=82 Identities=15% Similarity=0.226 Sum_probs=53.2
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCccc--cccccceeeeEEEEEEECCe----EEEEEEEeCCCCCC--------CCcch
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGA----RIAFSIWDVGGDSR--------SFDHV 164 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f~--~~~~t~g~~~~~~~i~v~~~----~v~l~iwD~~G~e~--------~~~~~ 164 (193)
.-|+=++|-+.||||+|+ .+.+-.-+ .|.-|. -+.+.|. .-++++.|..|--+ -++.
T Consensus 59 ~a~vg~vgFPSvGksTl~~~l~g~~s~vasyeftt-------l~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qv- 130 (358)
T KOG1487|consen 59 DARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTT-------LTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQV- 130 (358)
T ss_pred ceeeeEEecCccchhhhhhhhcCCCCcccccccee-------EEEecceEeccccceeeecCcchhcccccCCCCccEE-
Confidence 458889999999999999 77654332 332222 2233332 26889999886432 1111
Q ss_pred hhhccCCcEEEEEEECCChhhHHHH
Q 029430 165 PIACKDAVAILFMFDLTSRCTLNRF 189 (193)
Q Consensus 165 ~~~~~~a~~illvyDit~~~Sf~~l 189 (193)
-...+..+.+++|.|+-.+-+-..+
T Consensus 131 iavartcnli~~vld~~kp~~hk~~ 155 (358)
T KOG1487|consen 131 IAVARTCNLIFIVLDVLKPLSHKKI 155 (358)
T ss_pred EEEeecccEEEEEeeccCcccHHHH
Confidence 1235667899999999988776654
No 418
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=93.42 E-value=0.065 Score=44.02 Aligned_cols=22 Identities=18% Similarity=0.353 Sum_probs=18.3
Q ss_pred EEEEECCCCCChhhHHhhhcCc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNE 123 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~ 123 (193)
.+.++|.+|+|||||++.+.+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 28 IHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999555553
No 419
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=93.42 E-value=0.05 Score=42.85 Aligned_cols=20 Identities=30% Similarity=0.368 Sum_probs=17.5
Q ss_pred EEEEECCCCCChhhHH-hhhc
Q 029430 102 KISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~ 121 (193)
+|+++|.+|+|||++. .+..
T Consensus 1 ~I~i~G~pGsGKst~a~~La~ 21 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAK 21 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999 6654
No 420
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=93.41 E-value=0.15 Score=46.90 Aligned_cols=81 Identities=12% Similarity=0.220 Sum_probs=55.2
Q ss_pred EEEEECCCCCChhhHH-hhhcCccc--------------cccccceeeeEEEEEEE-----CCeEEEEEEEeCCCCCCCC
Q 029430 102 KISLLGDCQIGKTSFV-KYVGNEQE--------------RSLQMAGLNLINKTLMV-----QGARIAFSIWDVGGDSRSF 161 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~~~f~--------------~~~~t~g~~~~~~~i~v-----~~~~v~l~iwD~~G~e~~~ 161 (193)
+..++---.=|||+|. |++...-. +-+...|+.+....+.+ +|+.+.+++.||.|+-+|.
T Consensus 11 NFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFs 90 (603)
T COG0481 11 NFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS 90 (603)
T ss_pred ceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceE
Confidence 4455666677999999 98752111 11122344444444433 5688999999999999876
Q ss_pred cchhhhccCCcEEEEEEECCC
Q 029430 162 DHVPIACKDAVAILFMFDLTS 182 (193)
Q Consensus 162 ~~~~~~~~~a~~illvyDit~ 182 (193)
-...-.+....|.|+|.|.+.
T Consensus 91 YEVSRSLAACEGalLvVDAsQ 111 (603)
T COG0481 91 YEVSRSLAACEGALLVVDASQ 111 (603)
T ss_pred EEehhhHhhCCCcEEEEECcc
Confidence 555555667889999999987
No 421
>PHA00729 NTP-binding motif containing protein
Probab=93.37 E-value=0.064 Score=44.67 Aligned_cols=22 Identities=23% Similarity=0.444 Sum_probs=19.0
Q ss_pred eEEEEECCCCCChhhHH-hhhcC
Q 029430 101 LKISLLGDCQIGKTSFV-KYVGN 122 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~~ 122 (193)
.+|++.|.+|+|||+|. .+...
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999 76543
No 422
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=93.37 E-value=0.065 Score=44.45 Aligned_cols=23 Identities=13% Similarity=0.424 Sum_probs=18.9
Q ss_pred EEEEECCCCCChhhHHhhhcCcc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNEQ 124 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~f 124 (193)
.++++|++|+|||||++.+.+..
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~ 53 (253)
T TIGR02323 31 VLGIVGESGSGKSTLLGCLAGRL 53 (253)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999995555543
No 423
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=93.33 E-value=0.067 Score=44.88 Aligned_cols=23 Identities=30% Similarity=0.665 Sum_probs=20.4
Q ss_pred eEEEEECCCCCChhhHH-hhhcCc
Q 029430 101 LKISLLGDCQIGKTSFV-KYVGNE 123 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~~~ 123 (193)
-+++++|+.|+||||++ .+.+..
T Consensus 27 p~i~vvG~~~~GKSt~l~~i~g~~ 50 (240)
T smart00053 27 PQIAVVGGQSAGKSSVLENFVGRD 50 (240)
T ss_pred CeEEEEcCCCccHHHHHHHHhCCC
Confidence 37999999999999999 888765
No 424
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=93.31 E-value=0.068 Score=43.27 Aligned_cols=22 Identities=36% Similarity=0.483 Sum_probs=18.3
Q ss_pred EEEEECCCCCChhhHHhhhcCc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNE 123 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~ 123 (193)
.+.++|.+|+|||+|++.+.+.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999555553
No 425
>PTZ00088 adenylate kinase 1; Provisional
Probab=93.27 E-value=0.062 Score=44.69 Aligned_cols=21 Identities=38% Similarity=0.550 Sum_probs=18.4
Q ss_pred eEEEEECCCCCChhhHH-hhhc
Q 029430 101 LKISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~ 121 (193)
+||+|+|.+|+|||++. ++..
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999 6543
No 426
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=93.26 E-value=0.069 Score=43.15 Aligned_cols=22 Identities=18% Similarity=0.477 Sum_probs=18.2
Q ss_pred EEEEECCCCCChhhHHhhhcCc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNE 123 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~ 123 (193)
.+.++|++|+|||||++.+.+.
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 6899999999999999545443
No 427
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=93.24 E-value=0.072 Score=42.78 Aligned_cols=24 Identities=17% Similarity=0.297 Sum_probs=19.3
Q ss_pred eEEEEECCCCCChhhHHhhhcCcc
Q 029430 101 LKISLLGDCQIGKTSFVKYVGNEQ 124 (193)
Q Consensus 101 ~KivllGd~gvGKTSLlr~~~~~f 124 (193)
-.+.++|++|+|||+|++.+.+..
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~ 50 (201)
T cd03231 27 EALQVTGPNGSGKTTLLRILAGLS 50 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999995555543
No 428
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=93.23 E-value=0.069 Score=45.01 Aligned_cols=22 Identities=14% Similarity=0.209 Sum_probs=18.7
Q ss_pred eEEEEECCCCCChhhHH-hhhcC
Q 029430 101 LKISLLGDCQIGKTSFV-KYVGN 122 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~~ 122 (193)
=|++++|++|+|||+|+ .+.+.
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~ 39 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANA 39 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 38999999999999999 66544
No 429
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=93.23 E-value=0.23 Score=42.06 Aligned_cols=83 Identities=10% Similarity=0.033 Sum_probs=47.0
Q ss_pred EEEEECCCCCChhhHH-hhhcCcccc--ccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEEE
Q 029430 102 KISLLGDCQIGKTSFV-KYVGNEQER--SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 178 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~~~f~~--~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illvy 178 (193)
-+++.|..|+||||++ .++..-... ..-+++.. .++.+++ ...+++-. .....|.......++..--+|++-
T Consensus 82 lilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp---~E~~~~~-~~q~~v~~-~~~~~~~~~l~~~lR~~PD~i~vg 156 (264)
T cd01129 82 IILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDP---VEYQIPG-INQVQVNE-KAGLTFARGLRAILRQDPDIIMVG 156 (264)
T ss_pred EEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCC---ceecCCC-ceEEEeCC-cCCcCHHHHHHHHhccCCCEEEec
Confidence 3899999999999999 776543221 11122111 1122222 12223221 122245556666677666677788
Q ss_pred ECCChhhHHHH
Q 029430 179 DLTSRCTLNRF 189 (193)
Q Consensus 179 Dit~~~Sf~~l 189 (193)
.+.+.+++..+
T Consensus 157 EiR~~e~a~~~ 167 (264)
T cd01129 157 EIRDAETAEIA 167 (264)
T ss_pred cCCCHHHHHHH
Confidence 99999887754
No 430
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=93.23 E-value=0.061 Score=42.94 Aligned_cols=19 Identities=26% Similarity=0.471 Sum_probs=16.2
Q ss_pred EEEECCCCCChhhHH-hhhc
Q 029430 103 ISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 103 ivllGd~gvGKTSLl-r~~~ 121 (193)
|.+.|.+|+|||+|+ .+.+
T Consensus 2 igi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 578999999999999 6543
No 431
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=93.19 E-value=0.22 Score=40.14 Aligned_cols=20 Identities=15% Similarity=0.297 Sum_probs=17.2
Q ss_pred EEEECCCCCChhhHH-hhhcC
Q 029430 103 ISLLGDCQIGKTSFV-KYVGN 122 (193)
Q Consensus 103 ivllGd~gvGKTSLl-r~~~~ 122 (193)
|++.|.+|+||||++ .++..
T Consensus 4 ilI~GptGSGKTTll~~ll~~ 24 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDY 24 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999 76543
No 432
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=93.18 E-value=0.064 Score=42.45 Aligned_cols=20 Identities=25% Similarity=0.544 Sum_probs=17.8
Q ss_pred EEEECCCCCChhhHH-hhhcC
Q 029430 103 ISLLGDCQIGKTSFV-KYVGN 122 (193)
Q Consensus 103 ivllGd~gvGKTSLl-r~~~~ 122 (193)
|+|+|++|+||++|. +++..
T Consensus 5 ivl~Gpsg~GK~~l~~~L~~~ 25 (183)
T PF00625_consen 5 IVLVGPSGSGKSTLAKRLIQE 25 (183)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999 88753
No 433
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.18 E-value=0.085 Score=41.69 Aligned_cols=23 Identities=13% Similarity=0.138 Sum_probs=18.7
Q ss_pred EEEEECCCCCChhhHHhhhcCcc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNEQ 124 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~f 124 (193)
.+.++|.+|+|||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 28 IVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999995555543
No 434
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=93.18 E-value=0.053 Score=41.83 Aligned_cols=18 Identities=22% Similarity=0.405 Sum_probs=15.6
Q ss_pred EEEECCCCCChhhHH-hhh
Q 029430 103 ISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 103 ivllGd~gvGKTSLl-r~~ 120 (193)
|+++|.+|+|||++. .+.
T Consensus 1 i~l~G~~GsGKSTla~~l~ 19 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALA 19 (163)
T ss_pred CEEECCCCCCHHHHHHHHH
Confidence 578999999999999 654
No 435
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=93.16 E-value=0.073 Score=43.73 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=18.1
Q ss_pred EEEEECCCCCChhhHHhhhcCc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNE 123 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~ 123 (193)
.+.++|.+|+|||||++.+.+.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~ 50 (236)
T TIGR03864 29 FVALLGPNGAGKSTLFSLLTRL 50 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999555553
No 436
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.15 E-value=0.2 Score=42.66 Aligned_cols=80 Identities=25% Similarity=0.370 Sum_probs=50.6
Q ss_pred EEEEECCCCCChhhHHhhhcCccccccccceeeeEEEEE--EECCeEEEEEEEeCCCCCCCCcch---hhhccCCcEEEE
Q 029430 102 KISLLGDCQIGKTSFVKYVGNEQERSLQMAGLNLINKTL--MVQGARIAFSIWDVGGDSRSFDHV---PIACKDAVAILF 176 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~f~~~~~t~g~~~~~~~i--~v~~~~v~l~iwD~~G~e~~~~~~---~~~~~~a~~ill 176 (193)
.|+++|--.+||||+.+-+-.+- ....|.-.+...+.. .+.+.-+.+++||..||-.+..-. ...++...+.|+
T Consensus 29 ~ilLMG~rRsGKsSI~KVVFhkM-sPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALif 107 (347)
T KOG3887|consen 29 RILLMGLRRSGKSSIQKVVFHKM-SPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALIF 107 (347)
T ss_pred eEEEEeecccCcchhhheeeecc-CCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEEE
Confidence 49999999999999973321111 122233333222211 122344889999999998754432 345788899999
Q ss_pred EEECCC
Q 029430 177 MFDLTS 182 (193)
Q Consensus 177 vyDit~ 182 (193)
|.|.-+
T Consensus 108 vIDaQd 113 (347)
T KOG3887|consen 108 VIDAQD 113 (347)
T ss_pred EEechH
Confidence 998755
No 437
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.11 E-value=0.08 Score=41.49 Aligned_cols=22 Identities=32% Similarity=0.389 Sum_probs=18.3
Q ss_pred EEEEECCCCCChhhHHhhhcCc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNE 123 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~ 123 (193)
.+.++|++|+|||+|++.+.+.
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~ 49 (173)
T cd03230 28 IYGLLGPNGAGKTTLIKIILGL 49 (173)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999555554
No 438
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=93.11 E-value=0.079 Score=41.37 Aligned_cols=22 Identities=18% Similarity=0.385 Sum_probs=18.4
Q ss_pred EEEEECCCCCChhhHHhhhcCc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNE 123 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~ 123 (193)
.+.++|..|+|||||++.+.+.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~ 50 (166)
T cd03223 29 RLLITGPSGTGKSSLFRALAGL 50 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999555554
No 439
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=93.11 E-value=0.13 Score=48.48 Aligned_cols=75 Identities=15% Similarity=0.227 Sum_probs=46.2
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEE
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 176 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~ill 176 (193)
..+-+.++|++|+|||+|+ .++.. |. .....+ ......+.|+.-.++++++. ....++.. ..+-||.+|+
T Consensus 68 PPfIvavvGPpGtGKsTLirSlVrr-~tk~ti~~i----~GPiTvvsgK~RRiTflEcp--~Dl~~miD-vaKIaDLVlL 139 (1077)
T COG5192 68 PPFIVAVVGPPGTGKSTLIRSLVRR-FTKQTIDEI----RGPITVVSGKTRRITFLECP--SDLHQMID-VAKIADLVLL 139 (1077)
T ss_pred CCeEEEeecCCCCChhHHHHHHHHH-HHHhhhhcc----CCceEEeecceeEEEEEeCh--HHHHHHHh-HHHhhheeEE
Confidence 3577889999999999999 66533 32 222211 11222356777788888877 23333332 3456788888
Q ss_pred EEECC
Q 029430 177 MFDLT 181 (193)
Q Consensus 177 vyDit 181 (193)
..|-.
T Consensus 140 lIdgn 144 (1077)
T COG5192 140 LIDGN 144 (1077)
T ss_pred Eeccc
Confidence 77764
No 440
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=93.11 E-value=0.064 Score=43.36 Aligned_cols=23 Identities=22% Similarity=0.444 Sum_probs=19.6
Q ss_pred eeEEEEECCCCCChhhHH-hhhcC
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGN 122 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~ 122 (193)
-..|.++|..|+|||||+ +++..
T Consensus 22 ~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 22 LVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999 87653
No 441
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.11 E-value=0.075 Score=44.40 Aligned_cols=22 Identities=41% Similarity=0.671 Sum_probs=18.1
Q ss_pred EEEEECCCCCChhhHHhhhcCc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNE 123 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~ 123 (193)
.+.++|..|+|||||++.+.+.
T Consensus 27 ~~~i~G~NGsGKSTLlk~L~G~ 48 (246)
T cd03237 27 VIGILGPNGIGKTTFIKMLAGV 48 (246)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999555554
No 442
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.09 E-value=0.077 Score=44.67 Aligned_cols=22 Identities=18% Similarity=0.277 Sum_probs=18.5
Q ss_pred EEEEECCCCCChhhHHhhhcCc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNE 123 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~ 123 (193)
.+.++|.+|+|||||++.+.+.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl 50 (271)
T PRK13638 29 VTGLVGANGCGKSTLFMNLSGL 50 (271)
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 5889999999999999555554
No 443
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=93.08 E-value=0.051 Score=45.37 Aligned_cols=25 Identities=24% Similarity=0.402 Sum_probs=19.5
Q ss_pred eEEEEECCCCCChhhHHhhhcCccc
Q 029430 101 LKISLLGDCQIGKTSFVKYVGNEQE 125 (193)
Q Consensus 101 ~KivllGd~gvGKTSLlr~~~~~f~ 125 (193)
-.+++.|++|+|||||.+.+.++..
T Consensus 51 ~h~lf~GPPG~GKTTLA~IIA~e~~ 75 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARIIANELG 75 (233)
T ss_dssp -EEEEESSTTSSHHHHHHHHHHHCT
T ss_pred ceEEEECCCccchhHHHHHHHhccC
Confidence 3689999999999999966555444
No 444
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.08 E-value=0.066 Score=42.79 Aligned_cols=19 Identities=21% Similarity=0.372 Sum_probs=17.0
Q ss_pred EEEEECCCCCChhhHH-hhh
Q 029430 102 KISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~ 120 (193)
-+.++|.+|+|||+|+ +++
T Consensus 8 ii~ivG~sgsGKTTLi~~li 27 (173)
T PRK10751 8 LLAIAAWSGTGKTTLLKKLI 27 (173)
T ss_pred EEEEECCCCChHHHHHHHHH
Confidence 5789999999999999 776
No 445
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=93.03 E-value=0.081 Score=43.77 Aligned_cols=22 Identities=18% Similarity=0.365 Sum_probs=18.4
Q ss_pred EEEEECCCCCChhhHHhhhcCc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNE 123 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~ 123 (193)
.+.++|.+|+|||+|++.+.+.
T Consensus 35 ~~~i~G~nGsGKSTLl~~i~Gl 56 (252)
T CHL00131 35 IHAIMGPNGSGKSTLSKVIAGH 56 (252)
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 6899999999999999555553
No 446
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=93.02 E-value=0.062 Score=39.00 Aligned_cols=20 Identities=25% Similarity=0.444 Sum_probs=16.7
Q ss_pred EEEECCCCCChhhHH-hhhcC
Q 029430 103 ISLLGDCQIGKTSFV-KYVGN 122 (193)
Q Consensus 103 ivllGd~gvGKTSLl-r~~~~ 122 (193)
|.+.|++|+|||.|+ .++..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999 86543
No 447
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=92.99 E-value=0.067 Score=43.32 Aligned_cols=20 Identities=25% Similarity=0.360 Sum_probs=17.5
Q ss_pred EEEEECCCCCChhhHH-hhhc
Q 029430 102 KISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~ 121 (193)
||+|+|.+|+|||++. ++..
T Consensus 1 rI~i~G~pGsGKsT~a~~La~ 21 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAE 21 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999 7653
No 448
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.99 E-value=0.084 Score=42.14 Aligned_cols=21 Identities=24% Similarity=0.517 Sum_probs=17.6
Q ss_pred EEEEECCCCCChhhHHhhhcC
Q 029430 102 KISLLGDCQIGKTSFVKYVGN 122 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~ 122 (193)
.+.++|.+|+|||||++.+.+
T Consensus 35 ~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 35 LTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 578999999999999954544
No 449
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=92.98 E-value=0.08 Score=43.29 Aligned_cols=22 Identities=23% Similarity=0.289 Sum_probs=18.1
Q ss_pred EEEEECCCCCChhhHHhhhcCc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNE 123 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~ 123 (193)
.+.++|..|+|||+|++.+.+.
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~G~ 56 (225)
T PRK10247 35 FKLITGPSGCGKSTLLKIVASL 56 (225)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5899999999999999555543
No 450
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=92.96 E-value=0.14 Score=49.35 Aligned_cols=84 Identities=17% Similarity=0.169 Sum_probs=58.1
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccc-c----ccccceeeeEEEE--------EEECCe----EEEEEEEeCCCCCCC
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-R----SLQMAGLNLINKT--------LMVQGA----RIAFSIWDVGGDSRS 160 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~-~----~~~t~g~~~~~~~--------i~v~~~----~v~l~iwD~~G~e~~ 160 (193)
..-=++++|--..|||-|+ .+-+.+.. . ....+|..|.... +.-+++ .--+.+.||.|+|.|
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsF 553 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESF 553 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhh
Confidence 3445899999999999999 77664443 1 1223455443321 000111 124678999999999
Q ss_pred CcchhhhccCCcEEEEEEECCC
Q 029430 161 FDHVPIACKDAVAILFMFDLTS 182 (193)
Q Consensus 161 ~~~~~~~~~~a~~illvyDit~ 182 (193)
..++.......|.+|+|.||..
T Consensus 554 tnlRsrgsslC~~aIlvvdImh 575 (1064)
T KOG1144|consen 554 TNLRSRGSSLCDLAILVVDIMH 575 (1064)
T ss_pred hhhhhccccccceEEEEeehhc
Confidence 9999888888999999999964
No 451
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=92.94 E-value=0.092 Score=40.11 Aligned_cols=22 Identities=32% Similarity=0.652 Sum_probs=17.9
Q ss_pred EEEEECCCCCChhhHHhhhcCc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNE 123 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~ 123 (193)
-+.++|.+|+|||+|++.+.+.
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~ 49 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGE 49 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 4789999999999999555454
No 452
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=92.93 E-value=0.077 Score=43.48 Aligned_cols=23 Identities=17% Similarity=0.176 Sum_probs=18.6
Q ss_pred EEEEECCCCCChhhHHhhhcCcc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNEQ 124 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~f 124 (193)
.+.++|..|+|||||++.+.+..
T Consensus 14 ~~~i~G~nGsGKSTLl~~l~Gl~ 36 (230)
T TIGR02770 14 VLALVGESGSGKSLTCLAILGLL 36 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999995555543
No 453
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=92.93 E-value=0.081 Score=44.09 Aligned_cols=22 Identities=18% Similarity=0.474 Sum_probs=18.6
Q ss_pred EEEEECCCCCChhhHHhhhcCc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNE 123 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~ 123 (193)
.+.++|++|+|||||++.+.+.
T Consensus 34 ~~~i~G~nGsGKSTLl~~l~Gl 55 (258)
T PRK11701 34 VLGIVGESGSGKTTLLNALSAR 55 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999555554
No 454
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=92.92 E-value=0.094 Score=42.36 Aligned_cols=21 Identities=29% Similarity=0.371 Sum_probs=18.1
Q ss_pred eeEEEEECCCCCChhhHH-hhh
Q 029430 100 SLKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~ 120 (193)
..-|.++|.+|+|||||+ .+.
T Consensus 6 g~vi~I~G~sGsGKSTl~~~l~ 27 (207)
T TIGR00235 6 GIIIGIGGGSGSGKTTVARKIY 27 (207)
T ss_pred eEEEEEECCCCCCHHHHHHHHH
Confidence 456889999999999999 665
No 455
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.92 E-value=0.083 Score=44.63 Aligned_cols=22 Identities=14% Similarity=0.359 Sum_probs=18.1
Q ss_pred EEEEECCCCCChhhHHhhhcCc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNE 123 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~ 123 (193)
.+.++|++|+|||||++.+.+.
T Consensus 35 ~~~l~G~nGsGKSTLl~~i~Gl 56 (280)
T PRK13649 35 YTAFIGHTGSGKSTIMQLLNGL 56 (280)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999555443
No 456
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=92.90 E-value=0.083 Score=42.83 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=18.7
Q ss_pred EEEEECCCCCChhhHHhhhcCcc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNEQ 124 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~f 124 (193)
.+.++|++|+|||+|++.+.+..
T Consensus 39 ~~~i~G~nGsGKSTLl~~i~G~~ 61 (214)
T PRK13543 39 ALLVQGDNGAGKTTLLRVLAGLL 61 (214)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 58899999999999995555543
No 457
>PRK05480 uridine/cytidine kinase; Provisional
Probab=92.89 E-value=0.083 Score=42.58 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=19.3
Q ss_pred eeeEEEEECCCCCChhhHH-hhhc
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~ 121 (193)
....|.+.|.+|+|||+|+ .+..
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999 5543
No 458
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=92.89 E-value=0.085 Score=43.77 Aligned_cols=23 Identities=22% Similarity=0.475 Sum_probs=18.8
Q ss_pred EEEEECCCCCChhhHHhhhcCcc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNEQ 124 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~f 124 (193)
.+.++|.+|+|||+|++.+.+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (252)
T TIGR03005 28 KVALIGPSGSGKSTILRILMTLE 50 (252)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999995555543
No 459
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=92.86 E-value=0.089 Score=43.39 Aligned_cols=22 Identities=14% Similarity=0.285 Sum_probs=18.4
Q ss_pred EEEEECCCCCChhhHHhhhcCc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNE 123 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~ 123 (193)
.+.++|.+|+|||+|++.+.+.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 29 VHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 6899999999999999555554
No 460
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.85 E-value=0.084 Score=43.70 Aligned_cols=23 Identities=17% Similarity=0.330 Sum_probs=18.8
Q ss_pred EEEEECCCCCChhhHHhhhcCcc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNEQ 124 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~f 124 (193)
.+.++|.+|+|||||++.+.+..
T Consensus 31 ~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 31 ITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 58899999999999995555543
No 461
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=92.85 E-value=0.086 Score=43.33 Aligned_cols=22 Identities=14% Similarity=0.463 Sum_probs=18.2
Q ss_pred EEEEECCCCCChhhHHhhhcCc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNE 123 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~ 123 (193)
.+.++|++|+|||||++.+.+.
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRCINRL 51 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999555443
No 462
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=92.84 E-value=0.081 Score=41.73 Aligned_cols=20 Identities=25% Similarity=0.350 Sum_probs=17.6
Q ss_pred eEEEEECCCCCChhhHH-hhh
Q 029430 101 LKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~ 120 (193)
.+|+++|..|+|||+|. .+.
T Consensus 5 ~~I~liG~~GaGKStl~~~La 25 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLA 25 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHH
Confidence 47999999999999999 654
No 463
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=92.82 E-value=0.089 Score=42.06 Aligned_cols=22 Identities=18% Similarity=0.483 Sum_probs=18.3
Q ss_pred EEEEECCCCCChhhHHhhhcCc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNE 123 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~ 123 (193)
.+.++|++|+|||||++.+.+.
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLL 47 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999555543
No 464
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=92.81 E-value=0.09 Score=42.19 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=18.2
Q ss_pred EEEEECCCCCChhhHHhhhcCc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNE 123 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~ 123 (193)
.+.++|.+|+|||||++.+.+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999545443
No 465
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=92.81 E-value=0.077 Score=41.58 Aligned_cols=19 Identities=32% Similarity=0.345 Sum_probs=16.4
Q ss_pred EEEECCCCCChhhHH-hhhc
Q 029430 103 ISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 103 ivllGd~gvGKTSLl-r~~~ 121 (193)
|+++|.+|+|||++. ++..
T Consensus 2 i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 689999999999998 6543
No 466
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=92.80 E-value=0.077 Score=46.32 Aligned_cols=21 Identities=24% Similarity=0.586 Sum_probs=17.5
Q ss_pred EEEEECCCCCChhhHHhhhcC
Q 029430 102 KISLLGDCQIGKTSFVKYVGN 122 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~ 122 (193)
-+.++|++|+|||+|+|.+.|
T Consensus 30 ~vaLlGpSGaGKsTlLRiIAG 50 (345)
T COG1118 30 LVALLGPSGAGKSTLLRIIAG 50 (345)
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 378999999999999955544
No 467
>PRK00625 shikimate kinase; Provisional
Probab=92.78 E-value=0.086 Score=41.90 Aligned_cols=19 Identities=42% Similarity=0.452 Sum_probs=16.9
Q ss_pred EEEEECCCCCChhhHH-hhh
Q 029430 102 KISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~ 120 (193)
+|+++|-+|+|||++. .+.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La 21 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALA 21 (173)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 6999999999999999 553
No 468
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.77 E-value=0.084 Score=41.29 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=18.4
Q ss_pred EEEEECCCCCChhhHHhhhcCc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNE 123 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~ 123 (193)
.+.++|+.|+|||+|++.+.+.
T Consensus 30 ~~~l~G~nGsGKstLl~~i~G~ 51 (171)
T cd03228 30 KVAIVGPSGSGKSTLLKLLLRL 51 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5799999999999999555554
No 469
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=92.73 E-value=0.091 Score=44.31 Aligned_cols=22 Identities=23% Similarity=0.211 Sum_probs=18.3
Q ss_pred EEEEECCCCCChhhHHhhhcCc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNE 123 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~ 123 (193)
.+.++|.+|+|||||++.+.+.
T Consensus 35 ~~~l~G~nGsGKSTLl~~l~Gl 56 (272)
T PRK15056 35 IAALVGVNGSGKSTLFKALMGF 56 (272)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999555543
No 470
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=92.73 E-value=0.092 Score=43.18 Aligned_cols=22 Identities=18% Similarity=0.341 Sum_probs=18.2
Q ss_pred EEEEECCCCCChhhHHhhhcCc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNE 123 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~ 123 (193)
.+.++|.+|+|||||++.+.+.
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~G~ 51 (242)
T TIGR03411 30 LRVIIGPNGAGKTTMMDVITGK 51 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999555554
No 471
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=92.71 E-value=0.095 Score=43.97 Aligned_cols=23 Identities=30% Similarity=0.562 Sum_probs=18.8
Q ss_pred EEEEECCCCCChhhHHhhhcCcc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNEQ 124 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~f 124 (193)
.+.++|.+|+|||+|++.+.+..
T Consensus 39 ~~~i~G~nGsGKSTLl~~l~Gl~ 61 (265)
T PRK10575 39 VTGLIGHNGSGKSTLLKMLGRHQ 61 (265)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 68899999999999995555543
No 472
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=92.70 E-value=0.095 Score=42.13 Aligned_cols=22 Identities=14% Similarity=0.345 Sum_probs=18.0
Q ss_pred EEEEECCCCCChhhHHhhhcCc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNE 123 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~ 123 (193)
.+.++|.+|+|||||++.+.+.
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999555443
No 473
>PRK00279 adk adenylate kinase; Reviewed
Probab=92.68 E-value=0.09 Score=42.71 Aligned_cols=20 Identities=25% Similarity=0.323 Sum_probs=17.4
Q ss_pred eEEEEECCCCCChhhHH-hhh
Q 029430 101 LKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~ 120 (193)
+||+|+|.+|+|||++. .+.
T Consensus 1 ~~I~v~G~pGsGKsT~a~~la 21 (215)
T PRK00279 1 MRLILLGPPGAGKGTQAKFIA 21 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 37999999999999998 554
No 474
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=92.68 E-value=0.13 Score=42.18 Aligned_cols=22 Identities=18% Similarity=0.537 Sum_probs=18.3
Q ss_pred EEEEECCCCCChhhHHhhhcCc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNE 123 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~ 123 (193)
.+.++|++|+|||+|++.+.+.
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl 48 (232)
T PRK10771 27 RVAILGPSGAGKSTLLNLIAGF 48 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999555554
No 475
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=92.68 E-value=0.095 Score=43.45 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=18.4
Q ss_pred EEEEECCCCCChhhHHhhhcCc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNE 123 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~ 123 (193)
.+.++|++|+|||+|++.+.+.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl 54 (255)
T PRK11300 33 IVSLIGPNGAGKTTVFNCLTGF 54 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999555554
No 476
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.68 E-value=0.096 Score=42.12 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=18.0
Q ss_pred EEEEECCCCCChhhHHhhhcCc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNE 123 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~ 123 (193)
.+.++|+.|+|||||++.+.+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999555443
No 477
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=92.67 E-value=0.094 Score=46.64 Aligned_cols=21 Identities=33% Similarity=0.572 Sum_probs=0.0
Q ss_pred eeeEEEEECCCCCChhhHH-hh
Q 029430 99 VSLKISLLGDCQIGKTSFV-KY 119 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~ 119 (193)
..+||+++|.+++|||||+ ++
T Consensus 57 ~~~kiLLLG~geSGKSTi~KQ~ 78 (389)
T PF00503_consen 57 REIKILLLGSGESGKSTILKQM 78 (389)
T ss_dssp EEEEEEEEESTTSSHHHHHHHH
T ss_pred ccceEEEECCCCcchhhHHHHH
No 478
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=92.66 E-value=0.095 Score=43.97 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=18.5
Q ss_pred EEEEECCCCCChhhHHhhhcCc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNE 123 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~ 123 (193)
.+.++|.+|+|||+|++.+.+.
T Consensus 39 ~~~i~G~nGsGKSTLl~~l~Gl 60 (265)
T TIGR02769 39 TVGLLGRSGCGKSTLARLLLGL 60 (265)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999555554
No 479
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=92.65 E-value=0.032 Score=50.42 Aligned_cols=53 Identities=11% Similarity=0.182 Sum_probs=32.7
Q ss_pred EEEECCCCCChhhHHhhhcCccccccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhcc
Q 029430 103 ISLLGDCQIGKTSFVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACK 169 (193)
Q Consensus 103 ivllGd~gvGKTSLlr~~~~~f~~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~ 169 (193)
|.++|..|+|||+|++++.|-+ .|..| .+.+||+.+. -..-|+|+.+....+.
T Consensus 352 vFliG~NGsGKST~~~LLtGL~---~PqsG------~I~ldg~pV~-----~e~ledYR~LfSavFs 404 (546)
T COG4615 352 VFLIGGNGSGKSTLAMLLTGLY---QPQSG------EILLDGKPVS-----AEQLEDYRKLFSAVFS 404 (546)
T ss_pred EEEECCCCCcHHHHHHHHhccc---CCCCC------ceeECCccCC-----CCCHHHHHHHHHHHhh
Confidence 7899999999999996666644 34444 3445665542 2223456555544443
No 480
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=92.62 E-value=0.092 Score=43.76 Aligned_cols=22 Identities=14% Similarity=0.357 Sum_probs=18.2
Q ss_pred EEEEECCCCCChhhHHhhhcCc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNE 123 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~ 123 (193)
.+.++|.+|+|||||++.+.+.
T Consensus 32 ~~~i~G~nGsGKSTLl~~laGl 53 (258)
T PRK14241 32 VTAFIGPSGCGKSTVLRTLNRM 53 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5889999999999999555543
No 481
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=92.61 E-value=0.096 Score=42.81 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=18.4
Q ss_pred EEEEECCCCCChhhHHhhhcCc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNE 123 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~ 123 (193)
.+.++|.+|+|||+|++.+.+.
T Consensus 8 ~~~l~G~nGsGKSTLl~~l~G~ 29 (223)
T TIGR03771 8 LLGLLGPNGAGKTTLLRAILGL 29 (223)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999555554
No 482
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=92.61 E-value=0.096 Score=40.89 Aligned_cols=25 Identities=16% Similarity=0.416 Sum_probs=20.8
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCcc
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQ 124 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f 124 (193)
..=+++.|++|+|||++. .++...+
T Consensus 14 g~gvLi~G~sG~GKStlal~L~~~g~ 39 (149)
T cd01918 14 GIGVLITGPSGIGKSELALELIKRGH 39 (149)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHcCC
Confidence 456899999999999999 8876543
No 483
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=92.61 E-value=0.099 Score=42.03 Aligned_cols=22 Identities=14% Similarity=0.391 Sum_probs=18.3
Q ss_pred EEEEECCCCCChhhHHhhhcCc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNE 123 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~ 123 (193)
.+.++|.+|+|||+|++.+.+.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRCINLL 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999555453
No 484
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=92.59 E-value=0.085 Score=41.31 Aligned_cols=18 Identities=28% Similarity=0.314 Sum_probs=16.2
Q ss_pred EEEECCCCCChhhHH-hhh
Q 029430 103 ISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 103 ivllGd~gvGKTSLl-r~~ 120 (193)
|++.|..|+||||++ ++.
T Consensus 3 I~ieG~~GsGKtT~~~~L~ 21 (200)
T cd01672 3 IVFEGIDGAGKTTLIELLA 21 (200)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 789999999999999 664
No 485
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=92.57 E-value=0.099 Score=42.29 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=18.1
Q ss_pred EEEEECCCCCChhhHHhhhcCc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNE 123 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~ 123 (193)
.+.++|.+|+|||||++.+.+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 28 IVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999545443
No 486
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=92.55 E-value=0.089 Score=44.67 Aligned_cols=19 Identities=26% Similarity=0.499 Sum_probs=16.2
Q ss_pred EEEECCCCCChhhHH-hhhc
Q 029430 103 ISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 103 ivllGd~gvGKTSLl-r~~~ 121 (193)
++++|+.|+|||||+ .+.+
T Consensus 31 ~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 31 TGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 689999999999999 5543
No 487
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=92.53 E-value=0.11 Score=49.95 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=19.8
Q ss_pred EEEEECCCCCChhhHHhhhcCcc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNEQ 124 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~f 124 (193)
+|.++|.+|+|||||++++.+-+
T Consensus 501 ~vaIvG~SGsGKSTL~KLL~gly 523 (709)
T COG2274 501 KVAIVGRSGSGKSTLLKLLLGLY 523 (709)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 69999999999999997666644
No 488
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.52 E-value=0.092 Score=42.26 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=18.5
Q ss_pred EEEEECCCCCChhhHHhhhcCc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNE 123 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~ 123 (193)
.+.++|.+|+|||||++.+.+.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999555553
No 489
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=92.51 E-value=0.1 Score=42.57 Aligned_cols=22 Identities=27% Similarity=0.282 Sum_probs=18.2
Q ss_pred EEEEECCCCCChhhHHhhhcCc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNE 123 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~ 123 (193)
.+.++|..|+|||||++.+.+.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl 49 (232)
T cd03218 28 IVGLLGPNGAGKTTTFYMIVGL 49 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999555443
No 490
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=92.51 E-value=0.09 Score=44.78 Aligned_cols=23 Identities=26% Similarity=0.543 Sum_probs=19.6
Q ss_pred eeEEEEECCCCCChhhHH-hhhcC
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGN 122 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~ 122 (193)
..-++++|++|+|||+++ .++..
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~ 56 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSS 56 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCcEEEECCCCCchhHHHHhhhcc
Confidence 457899999999999999 87754
No 491
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=92.47 E-value=0.092 Score=40.92 Aligned_cols=19 Identities=26% Similarity=0.588 Sum_probs=16.6
Q ss_pred EEEECCCCCChhhHH-hhhc
Q 029430 103 ISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 103 ivllGd~gvGKTSLl-r~~~ 121 (193)
+.++|..|+|||+|+ +++.
T Consensus 2 i~i~G~~gsGKTtl~~~l~~ 21 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVK 21 (155)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 578999999999998 7765
No 492
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=92.47 E-value=0.095 Score=39.74 Aligned_cols=19 Identities=21% Similarity=0.302 Sum_probs=16.3
Q ss_pred EEEECCCCCChhhHH-hhhc
Q 029430 103 ISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 103 ivllGd~gvGKTSLl-r~~~ 121 (193)
+++.|.+|+|||++. .+..
T Consensus 2 i~l~G~~GsGKST~a~~l~~ 21 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAE 21 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHh
Confidence 689999999999999 6544
No 493
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.46 E-value=0.1 Score=43.19 Aligned_cols=21 Identities=19% Similarity=0.479 Sum_probs=17.7
Q ss_pred EEEEECCCCCChhhHHhhhcC
Q 029430 102 KISLLGDCQIGKTSFVKYVGN 122 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~ 122 (193)
.+.++|.+|+|||||++.+.+
T Consensus 31 ~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14262 31 ITAIIGPSGCGKTTLLRSINR 51 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 588999999999999955544
No 494
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=92.46 E-value=0.11 Score=41.93 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=18.2
Q ss_pred EEEEECCCCCChhhHHhhhcCc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNE 123 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~ 123 (193)
.+.++|.+|+|||||++.+.+.
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999555443
No 495
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=92.46 E-value=0.1 Score=43.19 Aligned_cols=21 Identities=24% Similarity=0.547 Sum_probs=17.7
Q ss_pred EEEEECCCCCChhhHHhhhcC
Q 029430 102 KISLLGDCQIGKTSFVKYVGN 122 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~ 122 (193)
.+.++|.+|+|||+|++.+.+
T Consensus 31 ~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14240 31 VTALIGPSGCGKSTFLRTLNR 51 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999955544
No 496
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=92.45 E-value=0.11 Score=43.84 Aligned_cols=23 Identities=26% Similarity=0.626 Sum_probs=18.8
Q ss_pred EEEEECCCCCChhhHHhhhcCcc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNEQ 124 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~f 124 (193)
.+.++|..|+|||||++.+.+..
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~Gl~ 57 (269)
T PRK11831 35 ITAIMGPSGIGKTTLLRLIGGQI 57 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999995555543
No 497
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=92.45 E-value=0.1 Score=42.46 Aligned_cols=23 Identities=17% Similarity=0.418 Sum_probs=18.5
Q ss_pred EEEEECCCCCChhhHHhhhcCcc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNEQ 124 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~f 124 (193)
.+.++|.+|+|||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 28 ITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 58899999999999995554443
No 498
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=92.43 E-value=0.099 Score=41.71 Aligned_cols=23 Identities=30% Similarity=0.419 Sum_probs=18.7
Q ss_pred eEEEEECCCCCChhhHHhhhcCc
Q 029430 101 LKISLLGDCQIGKTSFVKYVGNE 123 (193)
Q Consensus 101 ~KivllGd~gvGKTSLlr~~~~~ 123 (193)
-.+.++|..|+|||||++.+.+.
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl 48 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcC
Confidence 36889999999999999555443
No 499
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=92.42 E-value=0.096 Score=47.11 Aligned_cols=24 Identities=25% Similarity=0.473 Sum_probs=20.3
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhc
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~ 121 (193)
....+|+++|.+|+|||||+ .+..
T Consensus 217 ~~~~~IvI~G~~gsGKTTL~~~La~ 241 (399)
T PRK08099 217 FFVRTVAILGGESSGKSTLVNKLAN 241 (399)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 44569999999999999999 7654
No 500
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=92.42 E-value=0.09 Score=46.44 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=18.0
Q ss_pred EEEEECCCCCChhhHHhhhcCc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNE 123 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~ 123 (193)
-+.++|++|+|||||++.+.+-
T Consensus 32 ~~~llG~sGsGKSTLLr~iaGl 53 (356)
T PRK11650 32 FIVLVGPSGCGKSTLLRMVAGL 53 (356)
T ss_pred EEEEECCCCCcHHHHHHHHHCC
Confidence 4789999999999999555553
Done!