Query 029430
Match_columns 193
No_of_seqs 196 out of 1631
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 21:02:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029430.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029430hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 99.9 1.5E-27 5.1E-32 194.5 9.7 98 96-193 9-108 (216)
2 2hxs_A RAB-26, RAS-related pro 99.9 1.1E-21 3.6E-26 151.1 10.9 96 98-193 4-102 (178)
3 2a5j_A RAS-related protein RAB 99.9 1.5E-21 5.1E-26 153.2 11.6 96 98-193 19-116 (191)
4 3c5c_A RAS-like protein 12; GD 99.9 2.3E-21 7.9E-26 152.3 11.7 94 98-193 19-114 (187)
5 2gf9_A RAS-related protein RAB 99.9 6.5E-21 2.2E-25 149.1 13.2 95 99-193 21-117 (189)
6 2hup_A RAS-related protein RAB 99.9 1.1E-21 3.7E-26 156.0 8.8 96 98-193 27-124 (201)
7 2ew1_A RAS-related protein RAB 99.9 1.8E-21 6.1E-26 155.6 9.7 96 98-193 24-121 (201)
8 2fu5_C RAS-related protein RAB 99.9 2E-21 6.8E-26 150.6 9.7 95 99-193 7-103 (183)
9 3q3j_B RHO-related GTP-binding 99.8 2.6E-21 8.8E-26 155.6 10.1 97 96-193 23-122 (214)
10 1z08_A RAS-related protein RAB 99.8 5.2E-21 1.8E-25 145.9 10.6 96 98-193 4-101 (170)
11 1ek0_A Protein (GTP-binding pr 99.8 7.3E-21 2.5E-25 144.5 11.1 95 99-193 2-98 (170)
12 3kkq_A RAS-related protein M-R 99.8 5.1E-21 1.7E-25 148.3 10.2 97 96-193 14-112 (183)
13 1r2q_A RAS-related protein RAB 99.8 7.9E-21 2.7E-25 144.4 10.9 96 98-193 4-101 (170)
14 1z0f_A RAB14, member RAS oncog 99.8 7.2E-21 2.4E-25 146.0 10.5 96 98-193 13-110 (179)
15 2efe_B Small GTP-binding prote 99.8 1.1E-20 3.7E-25 145.8 11.4 97 97-193 9-107 (181)
16 3tw8_B RAS-related protein RAB 99.8 1.4E-20 4.7E-25 144.7 12.0 96 98-193 7-104 (181)
17 2q3h_A RAS homolog gene family 99.8 1.2E-20 4.2E-25 148.7 12.0 96 97-193 17-115 (201)
18 3cbq_A GTP-binding protein REM 99.8 2.8E-21 9.7E-26 153.3 8.2 95 99-193 22-119 (195)
19 3t5g_A GTP-binding protein RHE 99.8 1.6E-20 5.4E-25 145.3 12.3 95 98-193 4-100 (181)
20 2bcg_Y Protein YP2, GTP-bindin 99.8 1.6E-20 5.5E-25 148.7 12.4 96 98-193 6-103 (206)
21 3cpj_B GTP-binding protein YPT 99.8 1.1E-20 3.7E-25 152.3 11.6 96 98-193 11-108 (223)
22 2g6b_A RAS-related protein RAB 99.8 1.1E-20 3.7E-25 145.6 11.1 97 97-193 7-106 (180)
23 1z06_A RAS-related protein RAB 99.8 4.6E-21 1.6E-25 149.9 9.1 95 99-193 19-116 (189)
24 3ihw_A Centg3; RAS, centaurin, 99.8 6.2E-21 2.1E-25 149.8 9.7 89 98-193 18-108 (184)
25 1gwn_A RHO-related GTP-binding 99.8 7.6E-21 2.6E-25 152.2 10.3 95 98-193 26-123 (205)
26 1x3s_A RAS-related protein RAB 99.8 9.9E-21 3.4E-25 147.6 10.7 97 97-193 12-110 (195)
27 1z2a_A RAS-related protein RAB 99.8 9.6E-21 3.3E-25 143.9 10.4 95 99-193 4-100 (168)
28 2iwr_A Centaurin gamma 1; ANK 99.8 1.1E-20 3.7E-25 145.8 10.7 89 98-192 5-94 (178)
29 2oil_A CATX-8, RAS-related pro 99.8 1.8E-20 6.1E-25 146.8 12.1 96 98-193 23-120 (193)
30 1wms_A RAB-9, RAB9, RAS-relate 99.8 1.2E-20 4.1E-25 145.0 10.6 97 97-193 4-102 (177)
31 2y8e_A RAB-protein 6, GH09086P 99.8 1E-20 3.4E-25 145.2 10.0 97 97-193 11-109 (179)
32 3tkl_A RAS-related protein RAB 99.8 1.7E-20 6E-25 146.5 11.4 96 98-193 14-111 (196)
33 3l0i_B RAS-related protein RAB 99.8 5.8E-21 2E-25 151.0 8.5 96 98-193 31-128 (199)
34 2il1_A RAB12; G-protein, GDP, 99.8 6.1E-21 2.1E-25 150.2 8.6 96 98-193 24-121 (192)
35 3reg_A RHO-like small GTPase; 99.8 2.2E-20 7.5E-25 146.7 11.6 95 97-192 20-117 (194)
36 2j0v_A RAC-like GTP-binding pr 99.8 2E-20 6.7E-25 148.8 11.5 94 99-193 8-104 (212)
37 2g3y_A GTP-binding protein GEM 99.8 8.9E-21 3.1E-25 153.6 9.6 95 98-192 35-133 (211)
38 2bme_A RAB4A, RAS-related prot 99.8 1.4E-20 4.8E-25 145.9 10.2 96 98-193 8-105 (186)
39 1m7b_A RND3/RHOE small GTP-bin 99.8 2E-20 6.9E-25 145.9 11.1 94 98-192 5-101 (184)
40 2nzj_A GTP-binding protein REM 99.8 1.7E-20 5.7E-25 143.7 10.4 95 99-193 3-100 (175)
41 2atx_A Small GTP binding prote 99.8 2.3E-20 7.9E-25 146.3 11.3 95 98-193 16-113 (194)
42 1z0j_A RAB-22, RAS-related pro 99.8 2.8E-20 9.5E-25 141.6 11.4 96 98-193 4-101 (170)
43 2fn4_A P23, RAS-related protei 99.8 2.8E-20 9.4E-25 142.9 11.4 95 98-193 7-103 (181)
44 2p5s_A RAS and EF-hand domain 99.8 9E-21 3.1E-25 149.8 8.7 96 98-193 26-123 (199)
45 3gj0_A GTP-binding nuclear pro 99.8 1.3E-20 4.3E-25 151.3 9.4 98 96-193 11-110 (221)
46 1g16_A RAS-related protein SEC 99.8 1.1E-20 3.7E-25 143.9 8.5 94 100-193 3-98 (170)
47 1zbd_A Rabphilin-3A; G protein 99.8 2.6E-20 8.9E-25 147.0 10.9 95 99-193 7-103 (203)
48 2o52_A RAS-related protein RAB 99.8 9.5E-21 3.2E-25 150.2 7.9 96 98-193 23-120 (200)
49 3oes_A GTPase rhebl1; small GT 99.8 2.3E-20 8E-25 147.7 10.2 95 98-193 22-118 (201)
50 2cjw_A GTP-binding protein GEM 99.8 4.1E-20 1.4E-24 146.2 11.1 94 99-192 5-102 (192)
51 2fg5_A RAB-22B, RAS-related pr 99.8 3E-20 1E-24 146.0 10.2 96 98-193 21-118 (192)
52 3dz8_A RAS-related protein RAB 99.8 9.5E-22 3.2E-26 154.3 1.5 96 98-193 21-118 (191)
53 3t1o_A Gliding protein MGLA; G 99.8 9.8E-21 3.3E-25 147.4 7.0 97 97-193 11-126 (198)
54 4gzl_A RAS-related C3 botulinu 99.8 3.5E-20 1.2E-24 147.5 10.3 95 97-192 27-124 (204)
55 1c1y_A RAS-related protein RAP 99.8 2.9E-20 1E-24 141.0 9.4 94 99-193 2-97 (167)
56 1vg8_A RAS-related protein RAB 99.8 3.4E-20 1.2E-24 146.3 9.9 96 98-193 6-103 (207)
57 1ky3_A GTP-binding protein YPT 99.8 1.9E-20 6.7E-25 143.9 8.1 96 98-193 6-104 (182)
58 3clv_A RAB5 protein, putative; 99.8 5.2E-20 1.8E-24 143.3 10.6 95 99-193 6-139 (208)
59 3q85_A GTP-binding protein REM 99.8 3E-20 1E-24 141.7 8.8 94 100-193 2-98 (169)
60 1mh1_A RAC1; GTP-binding, GTPa 99.8 9.8E-20 3.4E-24 140.7 11.7 93 99-192 4-99 (186)
61 3bc1_A RAS-related protein RAB 99.8 4.5E-20 1.5E-24 143.1 9.6 97 97-193 8-116 (195)
62 3q72_A GTP-binding protein RAD 99.8 5E-20 1.7E-24 140.1 9.6 93 100-193 2-95 (166)
63 2f7s_A C25KG, RAS-related prot 99.8 2E-20 6.7E-25 149.3 7.6 96 98-193 23-130 (217)
64 2gco_A H9, RHO-related GTP-bin 99.8 1.2E-19 4.1E-24 143.7 11.9 93 99-192 24-119 (201)
65 2a9k_A RAS-related protein RAL 99.8 6.3E-20 2.2E-24 141.6 9.9 96 97-193 15-112 (187)
66 3cph_A RAS-related protein SEC 99.8 6.4E-20 2.2E-24 145.3 10.0 95 99-193 19-115 (213)
67 2yc2_C IFT27, small RAB-relate 99.8 1E-20 3.5E-25 148.9 5.1 96 98-193 18-119 (208)
68 4bas_A ADP-ribosylation factor 99.8 1E-19 3.5E-24 142.5 10.7 92 98-193 15-109 (199)
69 2fv8_A H6, RHO-related GTP-bin 99.8 1.6E-19 5.4E-24 143.7 11.6 93 99-192 24-119 (207)
70 2h17_A ADP-ribosylation factor 99.8 7.1E-20 2.4E-24 142.4 8.8 91 99-193 20-111 (181)
71 1f6b_A SAR1; gtpases, N-termin 99.8 9.5E-20 3.3E-24 144.6 9.7 92 98-193 23-115 (198)
72 1kao_A RAP2A; GTP-binding prot 99.8 1.6E-19 5.6E-24 136.4 10.5 94 99-193 2-97 (167)
73 1u8z_A RAS-related protein RAL 99.8 1.3E-19 4.6E-24 137.0 9.8 94 99-193 3-98 (168)
74 3bwd_D RAC-like GTP-binding pr 99.8 3.6E-20 1.2E-24 142.9 6.7 94 99-193 7-103 (182)
75 2j1l_A RHO-related GTP-binding 99.8 1E-19 3.6E-24 145.8 9.7 95 98-193 32-129 (214)
76 1oix_A RAS-related protein RAB 99.8 2.5E-19 8.7E-24 141.3 11.7 96 98-193 27-124 (191)
77 2bov_A RAla, RAS-related prote 99.8 1.5E-19 5.1E-24 142.2 10.2 95 98-193 12-108 (206)
78 1r8s_A ADP-ribosylation factor 99.8 5.7E-20 2E-24 139.5 7.4 89 101-193 1-90 (164)
79 1zd9_A ADP-ribosylation factor 99.8 1E-19 3.5E-24 142.5 9.0 91 99-193 21-113 (188)
80 4dsu_A GTPase KRAS, isoform 2B 99.8 2.8E-19 9.4E-24 138.5 11.0 94 99-193 3-98 (189)
81 2h57_A ADP-ribosylation factor 99.8 1.5E-19 5E-24 141.5 9.5 91 99-193 20-113 (190)
82 1fzq_A ADP-ribosylation factor 99.8 1.3E-19 4.6E-24 141.4 9.0 91 99-193 15-106 (181)
83 1m2o_B GTP-binding protein SAR 99.8 2.3E-19 7.7E-24 141.3 10.3 92 98-193 21-113 (190)
84 3con_A GTPase NRAS; structural 99.8 4E-19 1.4E-23 138.6 11.5 95 98-193 19-115 (190)
85 2f9l_A RAB11B, member RAS onco 99.8 3.5E-19 1.2E-23 140.9 10.7 95 99-193 4-100 (199)
86 2atv_A RERG, RAS-like estrogen 99.8 2.6E-19 9E-24 140.9 9.7 94 98-193 26-121 (196)
87 2zej_A Dardarin, leucine-rich 99.8 1.6E-20 5.6E-25 146.8 2.6 94 100-193 2-103 (184)
88 2b6h_A ADP-ribosylation factor 99.8 3.4E-19 1.2E-23 140.5 10.0 92 98-193 27-119 (192)
89 1zj6_A ADP-ribosylation factor 99.8 2.6E-19 8.9E-24 139.7 9.2 91 99-193 15-106 (187)
90 1upt_A ARL1, ADP-ribosylation 99.8 3.9E-19 1.3E-23 135.5 9.8 90 100-193 7-97 (171)
91 2erx_A GTP-binding protein DI- 99.8 3.6E-19 1.2E-23 135.4 9.4 92 100-192 3-96 (172)
92 4djt_A GTP-binding nuclear pro 99.8 3.3E-19 1.1E-23 142.3 9.1 97 97-193 8-107 (218)
93 2ce2_X GTPase HRAS; signaling 99.8 6.7E-19 2.3E-23 132.6 10.3 93 100-193 3-97 (166)
94 3llu_A RAS-related GTP-binding 99.8 1.2E-19 4.1E-24 143.2 6.0 93 99-193 19-120 (196)
95 2gf0_A GTP-binding protein DI- 99.8 3.7E-19 1.3E-23 139.3 8.1 93 99-192 7-101 (199)
96 2x77_A ADP-ribosylation factor 99.8 5.3E-19 1.8E-23 137.9 8.4 91 99-193 21-112 (189)
97 1ksh_A ARF-like protein 2; sma 99.8 9E-19 3.1E-23 136.1 9.2 91 99-193 17-108 (186)
98 1moz_A ARL1, ADP-ribosylation 99.8 1E-18 3.5E-23 135.0 7.9 91 99-193 17-108 (183)
99 3th5_A RAS-related C3 botulinu 99.6 1E-19 3.5E-24 144.0 0.0 95 98-193 28-125 (204)
100 3r7w_B Gtpase2, GTP-binding pr 99.7 2.2E-18 7.4E-23 148.9 6.5 77 102-183 1-85 (331)
101 2wkq_A NPH1-1, RAS-related C3 99.7 1.3E-17 4.5E-22 140.5 11.0 92 100-192 155-249 (332)
102 3o47_A ADP-ribosylation factor 99.7 1.4E-17 4.9E-22 143.0 10.0 91 99-193 164-255 (329)
103 3lvq_E ARF-GAP with SH3 domain 99.7 1.2E-17 4.2E-22 149.8 9.9 92 98-193 320-412 (497)
104 2lkc_A Translation initiation 99.7 2.4E-17 8.3E-22 126.5 9.8 91 99-191 7-102 (178)
105 3r7w_A Gtpase1, GTP-binding pr 99.7 1.4E-17 4.9E-22 141.6 9.1 90 100-192 3-102 (307)
106 3c5h_A Glucocorticoid receptor 99.7 7.3E-19 2.5E-23 145.6 0.9 95 99-193 18-187 (255)
107 2fh5_B SR-beta, signal recogni 99.7 5.8E-18 2E-22 134.6 5.7 93 98-192 5-101 (214)
108 2wji_A Ferrous iron transport 99.6 1E-15 3.5E-20 117.4 10.3 86 100-187 3-98 (165)
109 2wjg_A FEOB, ferrous iron tran 99.6 2.4E-15 8.2E-20 116.6 9.5 85 99-185 6-100 (188)
110 2gj8_A MNME, tRNA modification 99.6 2.5E-15 8.4E-20 116.5 9.1 90 100-192 4-104 (172)
111 2ged_A SR-beta, signal recogni 99.6 3E-16 1E-20 122.4 3.2 86 99-193 47-142 (193)
112 1nrj_B SR-beta, signal recogni 99.6 1.9E-16 6.5E-21 126.2 2.1 87 98-193 10-106 (218)
113 2dyk_A GTP-binding protein; GT 99.6 8.9E-15 3E-19 110.1 7.8 84 101-186 2-95 (161)
114 3dpu_A RAB family protein; roc 99.5 5.2E-16 1.8E-20 141.0 -0.1 92 97-188 38-139 (535)
115 1svi_A GTP-binding protein YSX 99.5 3E-15 1E-19 116.7 3.4 89 99-190 22-125 (195)
116 2qu8_A Putative nucleolar GTP- 99.5 2.5E-14 8.4E-19 115.4 8.5 86 99-187 28-125 (228)
117 2cxx_A Probable GTP-binding pr 99.5 1E-15 3.5E-20 118.5 0.1 86 101-192 2-102 (190)
118 3iby_A Ferrous iron transport 99.5 9.3E-14 3.2E-18 115.4 9.6 90 101-192 2-105 (256)
119 3a1s_A Iron(II) transport prot 99.5 2.8E-13 9.4E-18 112.6 11.6 88 99-188 4-101 (258)
120 3pqc_A Probable GTP-binding pr 99.4 9.1E-14 3.1E-18 107.6 4.9 91 99-192 22-128 (195)
121 3i8s_A Ferrous iron transport 99.4 3.4E-13 1.2E-17 112.8 8.5 91 100-192 3-107 (274)
122 3b1v_A Ferrous iron uptake tra 99.4 1.7E-13 5.8E-18 115.0 6.5 87 100-189 3-99 (272)
123 3k53_A Ferrous iron transport 99.4 1.1E-12 3.8E-17 109.0 10.6 84 100-185 3-96 (271)
124 1mky_A Probable GTP-binding pr 99.4 5.2E-13 1.8E-17 118.5 7.5 89 102-192 3-105 (439)
125 3gee_A MNME, tRNA modification 99.4 4.3E-13 1.5E-17 120.8 6.8 86 100-187 233-329 (476)
126 3iev_A GTP-binding protein ERA 99.4 8.6E-13 2.9E-17 112.1 7.3 93 99-192 9-114 (308)
127 2xtp_A GTPase IMAP family memb 99.4 2.7E-12 9.4E-17 105.4 10.0 83 98-182 20-117 (260)
128 3lxx_A GTPase IMAP family memb 99.4 1.6E-12 5.5E-17 105.7 8.1 84 98-183 27-125 (239)
129 3def_A T7I23.11 protein; chlor 99.4 1.3E-12 4.4E-17 108.2 7.6 84 99-184 35-130 (262)
130 1wf3_A GTP-binding protein; GT 99.3 4.5E-12 1.5E-16 107.6 10.0 87 98-187 5-103 (301)
131 2hjg_A GTP-binding protein ENG 99.3 3.4E-13 1.2E-17 119.6 2.7 89 99-189 174-276 (436)
132 3qq5_A Small GTP-binding prote 99.3 2.6E-12 8.8E-17 114.2 7.9 93 98-191 32-134 (423)
133 4fid_A G protein alpha subunit 99.3 2.1E-12 7.2E-17 111.8 5.8 61 129-193 147-217 (340)
134 3lxw_A GTPase IMAP family memb 99.3 5.3E-12 1.8E-16 103.9 7.6 82 99-182 20-117 (247)
135 1h65_A Chloroplast outer envel 99.3 2.3E-12 7.9E-17 107.0 5.1 84 99-182 38-131 (270)
136 1xzp_A Probable tRNA modificat 99.3 2E-12 6.8E-17 116.7 5.1 89 100-190 243-343 (482)
137 3ohm_A Guanine nucleotide-bind 99.3 8.5E-12 2.9E-16 107.5 7.8 60 129-192 153-222 (327)
138 4dhe_A Probable GTP-binding pr 99.2 1.1E-12 3.8E-17 104.4 1.5 86 99-184 28-129 (223)
139 2hjg_A GTP-binding protein ENG 99.2 1.7E-12 5.8E-17 115.1 2.3 87 100-188 3-100 (436)
140 1jny_A EF-1-alpha, elongation 99.2 7.5E-12 2.6E-16 111.1 5.8 92 99-193 5-129 (435)
141 3geh_A MNME, tRNA modification 99.2 4.7E-12 1.6E-16 113.7 3.8 87 100-188 224-321 (462)
142 4dcu_A GTP-binding protein ENG 99.2 9.8E-12 3.3E-16 110.8 4.7 86 98-185 193-292 (456)
143 4dcu_A GTP-binding protein ENG 99.2 3.3E-12 1.1E-16 113.8 1.1 84 100-183 23-115 (456)
144 2qag_A Septin-2, protein NEDD5 99.2 9.1E-12 3.1E-16 108.2 3.2 91 99-189 36-163 (361)
145 2e87_A Hypothetical protein PH 99.2 1.2E-10 3.9E-15 100.7 10.1 92 99-192 166-270 (357)
146 3p26_A Elongation factor 1 alp 99.1 1.2E-11 4.3E-16 111.0 3.4 88 99-186 32-150 (483)
147 3izy_P Translation initiation 99.1 2.6E-12 8.7E-17 117.3 -1.4 89 100-189 4-94 (537)
148 3j2k_7 ERF3, eukaryotic polype 99.1 1.5E-10 5E-15 103.0 9.9 83 99-183 16-131 (439)
149 1pui_A ENGB, probable GTP-bind 99.1 2.5E-11 8.6E-16 95.6 4.0 86 99-187 25-125 (210)
150 1lnz_A SPO0B-associated GTP-bi 99.1 4.1E-11 1.4E-15 103.7 5.6 88 102-192 160-261 (342)
151 3t5d_A Septin-7; GTP-binding p 99.1 8.8E-11 3E-15 97.7 7.0 61 99-159 7-77 (274)
152 3sjy_A Translation initiation 99.1 1.5E-10 5.3E-15 101.5 8.8 95 98-192 6-120 (403)
153 1r5b_A Eukaryotic peptide chai 99.1 5.6E-11 1.9E-15 106.5 6.1 82 98-183 41-157 (467)
154 1mky_A Probable GTP-binding pr 99.1 1.1E-10 3.6E-15 103.6 7.6 88 99-188 179-281 (439)
155 1g7s_A Translation initiation 99.1 2.9E-11 1E-15 111.6 4.1 93 99-191 4-117 (594)
156 2c78_A Elongation factor TU-A; 99.1 5.4E-11 1.9E-15 104.4 5.5 88 99-186 10-114 (405)
157 2ohf_A Protein OLA1, GTP-bindi 99.1 6.1E-11 2.1E-15 104.6 5.7 91 100-190 22-136 (396)
158 1s0u_A EIF-2-gamma, translatio 99.1 1.6E-10 5.6E-15 101.5 8.5 94 99-192 7-130 (408)
159 1wb1_A Translation elongation 99.1 8.9E-11 3.1E-15 105.7 6.7 91 98-190 17-119 (482)
160 2qtf_A Protein HFLX, GTP-bindi 99.1 9.4E-11 3.2E-15 102.1 6.5 90 100-192 178-281 (364)
161 3tr5_A RF-3, peptide chain rel 99.1 5.9E-11 2E-15 108.1 5.0 93 100-192 13-127 (528)
162 1jal_A YCHF protein; nucleotid 99.1 1.2E-10 4.1E-15 101.6 6.5 81 100-182 2-108 (363)
163 3cb4_D GTP-binding protein LEP 99.1 7.7E-11 2.6E-15 108.8 5.2 93 100-192 4-116 (599)
164 1n0u_A EF-2, elongation factor 99.1 1.9E-10 6.7E-15 109.8 8.1 94 99-192 18-143 (842)
165 1d2e_A Elongation factor TU (E 99.0 1.1E-10 3.8E-15 102.3 4.7 85 100-184 3-103 (397)
166 1kk1_A EIF2gamma; initiation o 99.0 6E-10 2E-14 97.9 9.3 96 97-192 7-132 (410)
167 1zo1_I IF2, translation initia 99.0 4.9E-11 1.7E-15 108.1 1.9 89 100-190 4-97 (501)
168 1zun_B Sulfate adenylate trans 99.0 3.5E-10 1.2E-14 100.2 7.2 87 98-184 22-141 (434)
169 2h5e_A Peptide chain release f 99.0 2.6E-10 8.8E-15 103.9 5.8 85 99-183 12-118 (529)
170 2ywe_A GTP-binding protein LEP 99.0 2.3E-10 7.8E-15 105.7 5.3 93 100-192 6-118 (600)
171 3izq_1 HBS1P, elongation facto 99.0 1.6E-10 5.4E-15 106.9 4.1 84 98-183 165-281 (611)
172 1f60_A Elongation factor EEF1A 99.0 1.8E-10 6.3E-15 102.9 4.0 81 99-183 6-121 (458)
173 1ega_A Protein (GTP-binding pr 99.0 2.5E-10 8.6E-15 96.6 4.6 82 98-182 6-100 (301)
174 1wxq_A GTP-binding protein; st 99.0 9.7E-10 3.3E-14 96.8 8.0 83 101-183 1-114 (397)
175 1azs_C GS-alpha; complex (lyas 99.0 7.1E-10 2.4E-14 97.9 6.2 61 129-193 203-273 (402)
176 2aka_B Dynamin-1; fusion prote 98.9 3.9E-10 1.3E-14 93.7 4.1 27 99-125 25-52 (299)
177 1u0l_A Probable GTPase ENGC; p 98.9 3.2E-10 1.1E-14 96.0 2.2 73 115-193 32-108 (301)
178 1dar_A EF-G, elongation factor 98.9 1.6E-09 5.4E-14 101.5 7.1 91 98-192 10-122 (691)
179 2elf_A Protein translation elo 98.9 9.5E-10 3.2E-14 95.9 4.7 78 102-190 23-101 (370)
180 2xtz_A Guanine nucleotide-bind 98.9 1.1E-09 3.7E-14 95.2 4.6 55 139-193 171-239 (354)
181 2rdo_7 EF-G, elongation factor 98.8 3.1E-09 1.1E-13 99.7 6.9 92 99-192 9-127 (704)
182 3avx_A Elongation factor TS, e 98.8 6.9E-10 2.3E-14 108.7 1.9 86 98-183 294-395 (1289)
183 3mca_A HBS1, elongation factor 98.8 6.6E-10 2.2E-14 102.4 1.6 83 98-182 175-290 (592)
184 2xex_A Elongation factor G; GT 98.8 2.5E-09 8.6E-14 100.1 5.5 90 99-192 9-120 (693)
185 2dy1_A Elongation factor G; tr 98.8 1.9E-09 6.5E-14 100.5 4.5 87 100-186 9-113 (665)
186 1cip_A Protein (guanine nucleo 98.8 3.3E-09 1.1E-13 92.1 5.5 62 128-193 178-249 (353)
187 2j69_A Bacterial dynamin-like 98.8 4.2E-09 1.4E-13 98.6 5.4 92 100-192 69-222 (695)
188 2qnr_A Septin-2, protein NEDD5 98.8 1.6E-09 5.5E-14 91.8 1.7 68 98-165 16-101 (301)
189 1zcb_A G alpha I/13; GTP-bindi 98.7 9.5E-09 3.2E-13 89.5 6.0 62 128-193 186-257 (362)
190 2qag_C Septin-7; cell cycle, c 98.7 6.8E-09 2.3E-13 92.0 5.1 93 97-189 28-156 (418)
191 1jwy_B Dynamin A GTPase domain 98.7 7.2E-09 2.5E-13 86.9 4.7 26 99-124 23-49 (315)
192 3t34_A Dynamin-related protein 98.7 1.4E-08 4.9E-13 87.4 6.6 38 147-184 136-186 (360)
193 2dby_A GTP-binding protein; GD 98.7 1.4E-08 4.6E-13 88.7 6.5 80 101-182 2-111 (368)
194 2qpt_A EH domain-containing pr 98.7 7.5E-09 2.6E-13 94.6 3.5 88 100-190 65-208 (550)
195 2hf9_A Probable hydrogenase ni 98.5 3.1E-10 1.1E-14 90.5 -9.1 37 100-136 38-76 (226)
196 2x2e_A Dynamin-1; nitration, h 98.5 3.6E-08 1.2E-12 84.8 3.2 27 99-125 30-57 (353)
197 1udx_A The GTP-binding protein 98.5 2.2E-07 7.5E-12 82.3 7.3 89 102-192 159-256 (416)
198 1ni3_A YCHF GTPase, YCHF GTP-b 98.5 2.8E-07 9.7E-12 81.0 7.2 83 100-182 20-127 (392)
199 4a9a_A Ribosome-interacting GT 98.1 5.4E-06 1.9E-10 72.5 8.2 83 100-184 72-163 (376)
200 2wsm_A Hydrogenase expression/ 98.1 1.3E-06 4.6E-11 68.9 3.2 80 100-183 30-142 (221)
201 3cnl_A YLQF, putative uncharac 98.1 1.2E-06 4.1E-11 72.7 2.4 57 101-160 100-157 (262)
202 1bif_A 6-phosphofructo-2-kinas 97.9 1.3E-07 4.3E-12 84.5 -7.2 92 99-191 38-140 (469)
203 3p32_A Probable GTPase RV1496/ 97.9 6.2E-06 2.1E-10 71.0 3.5 40 147-189 172-211 (355)
204 1puj_A YLQF, conserved hypothe 97.7 2E-05 6.9E-10 66.0 4.1 58 99-159 119-177 (282)
205 2www_A Methylmalonic aciduria 97.7 2.6E-05 9E-10 67.1 4.2 40 147-189 167-206 (349)
206 3vqt_A RF-3, peptide chain rel 97.7 2.6E-05 9E-10 71.1 4.3 83 100-182 31-135 (548)
207 2p67_A LAO/AO transport system 97.4 5.5E-05 1.9E-09 64.7 1.9 36 147-185 149-184 (341)
208 4fn5_A EF-G 1, elongation fact 97.3 0.00029 1E-08 65.9 6.2 83 100-182 13-120 (709)
209 3j25_A Tetracycline resistance 97.2 5.1E-05 1.7E-09 70.3 -0.3 81 102-182 4-102 (638)
210 1yrb_A ATP(GTP)binding protein 97.2 0.00016 5.4E-09 58.4 2.4 22 99-120 13-35 (262)
211 2qm8_A GTPase/ATPase; G protei 97.0 0.00013 4.5E-09 62.4 0.3 36 147-185 148-183 (337)
212 3ec1_A YQEH GTPase; atnos1, at 96.8 0.0018 6.2E-08 55.9 6.5 75 101-180 163-255 (369)
213 2yv5_A YJEQ protein; hydrolase 96.7 0.00098 3.4E-08 56.0 3.5 38 156-193 65-103 (302)
214 3zvr_A Dynamin-1; hydrolase, D 96.6 0.0088 3E-07 56.6 9.9 27 98-124 49-76 (772)
215 3h2y_A GTPase family protein; 96.4 0.0038 1.3E-07 53.9 5.5 57 101-160 161-224 (368)
216 1f5n_A Interferon-induced guan 96.2 0.0039 1.3E-07 57.4 4.4 60 98-159 36-103 (592)
217 3l82_B F-box only protein 4; T 96.1 0.0012 4E-08 53.7 0.7 33 153-185 108-140 (227)
218 2j37_W Signal recognition part 96.0 0.0037 1.3E-07 56.5 3.6 84 100-183 101-226 (504)
219 2qag_B Septin-6, protein NEDD5 95.8 0.015 5.2E-07 51.4 6.4 59 100-158 42-106 (427)
220 3sop_A Neuronal-specific septi 95.7 0.0047 1.6E-07 51.1 2.5 23 100-122 2-25 (270)
221 1ye8_A Protein THEP1, hypothet 95.6 0.0053 1.8E-07 47.5 2.5 20 101-120 1-21 (178)
222 1kgd_A CASK, peripheral plasma 95.6 0.0055 1.9E-07 47.0 2.3 21 101-121 6-27 (180)
223 3l2o_B F-box only protein 4; s 95.3 0.0022 7.5E-08 54.4 -0.7 33 154-186 194-226 (312)
224 1lvg_A Guanylate kinase, GMP k 95.3 0.0066 2.3E-07 47.4 2.1 21 101-121 5-26 (198)
225 1ex7_A Guanylate kinase; subst 95.3 0.0079 2.7E-07 47.2 2.5 20 103-122 4-24 (186)
226 3a00_A Guanylate kinase, GMP k 95.1 0.0095 3.3E-07 45.8 2.3 19 103-121 4-23 (186)
227 4gp7_A Metallophosphoesterase; 95.0 0.01 3.4E-07 45.2 2.3 19 102-120 11-30 (171)
228 3tr0_A Guanylate kinase, GMP k 95.0 0.011 3.6E-07 45.6 2.3 20 102-121 9-29 (205)
229 3tau_A Guanylate kinase, GMP k 94.8 0.012 4.1E-07 46.1 2.3 21 102-122 10-31 (208)
230 1zp6_A Hypothetical protein AT 94.8 0.012 4.2E-07 44.8 2.3 21 101-121 10-31 (191)
231 1s96_A Guanylate kinase, GMP k 94.8 0.012 4.2E-07 47.0 2.3 20 102-121 18-38 (219)
232 1znw_A Guanylate kinase, GMP k 94.7 0.014 4.6E-07 45.7 2.3 20 102-121 22-42 (207)
233 1jbk_A CLPB protein; beta barr 94.7 0.014 4.9E-07 43.4 2.3 20 102-121 45-65 (195)
234 1z6g_A Guanylate kinase; struc 94.7 0.014 4.7E-07 46.3 2.3 20 102-121 25-45 (218)
235 3tif_A Uncharacterized ABC tra 94.7 0.016 5.3E-07 46.8 2.6 22 102-123 33-54 (235)
236 3ney_A 55 kDa erythrocyte memb 94.7 0.017 5.7E-07 45.8 2.7 22 100-121 19-41 (197)
237 2qor_A Guanylate kinase; phosp 94.5 0.016 5.6E-07 45.0 2.3 21 101-121 13-34 (204)
238 3kb2_A SPBC2 prophage-derived 94.5 0.018 6.3E-07 42.7 2.5 19 102-120 3-22 (173)
239 2pcj_A ABC transporter, lipopr 94.4 0.018 6E-07 46.1 2.4 22 102-123 32-53 (224)
240 3lw7_A Adenylate kinase relate 94.4 0.019 6.6E-07 42.3 2.4 19 101-119 2-21 (179)
241 3c8u_A Fructokinase; YP_612366 94.3 0.02 6.9E-07 44.7 2.4 21 100-120 22-43 (208)
242 2j41_A Guanylate kinase; GMP, 94.3 0.019 6.6E-07 44.0 2.3 21 101-121 7-28 (207)
243 2jaq_A Deoxyguanosine kinase; 94.3 0.021 7.3E-07 43.5 2.5 20 102-121 2-22 (205)
244 1b0u_A Histidine permease; ABC 94.3 0.022 7.5E-07 46.7 2.7 22 102-123 34-55 (262)
245 3fb4_A Adenylate kinase; psych 94.3 0.022 7.6E-07 44.3 2.6 20 101-120 1-21 (216)
246 3dl0_A Adenylate kinase; phosp 94.2 0.023 7.8E-07 44.3 2.6 20 101-120 1-21 (216)
247 1mv5_A LMRA, multidrug resista 94.2 0.025 8.5E-07 45.8 2.9 22 102-123 30-51 (243)
248 1htw_A HI0065; nucleotide-bind 94.2 0.021 7.1E-07 43.4 2.3 21 102-122 35-56 (158)
249 2cbz_A Multidrug resistance-as 94.2 0.025 8.4E-07 45.7 2.9 22 102-123 33-54 (237)
250 2ff7_A Alpha-hemolysin translo 94.2 0.025 8.6E-07 46.0 2.9 22 102-123 37-58 (247)
251 1ly1_A Polynucleotide kinase; 94.2 0.024 8.1E-07 42.4 2.5 21 101-121 3-24 (181)
252 2i3b_A HCR-ntpase, human cance 94.1 0.02 6.9E-07 44.7 2.1 20 102-121 3-23 (189)
253 3ec2_A DNA replication protein 94.1 0.018 6.2E-07 43.7 1.8 20 101-120 39-59 (180)
254 3gfo_A Cobalt import ATP-bindi 94.1 0.025 8.5E-07 46.9 2.7 22 102-123 36-57 (275)
255 1g6h_A High-affinity branched- 94.1 0.025 8.5E-07 46.2 2.6 22 102-123 35-56 (257)
256 2cdn_A Adenylate kinase; phosp 94.0 0.029 1E-06 43.2 2.9 21 100-120 20-41 (201)
257 2olj_A Amino acid ABC transpor 94.0 0.026 8.9E-07 46.5 2.7 22 102-123 52-73 (263)
258 1kag_A SKI, shikimate kinase I 94.0 0.024 8.3E-07 42.3 2.3 20 101-120 5-25 (173)
259 3vaa_A Shikimate kinase, SK; s 94.0 0.026 8.9E-07 43.7 2.6 20 101-120 26-46 (199)
260 1sgw_A Putative ABC transporte 94.0 0.027 9.3E-07 44.9 2.7 22 102-123 37-58 (214)
261 1nks_A Adenylate kinase; therm 94.0 0.026 9E-07 42.6 2.4 20 102-121 3-23 (194)
262 2bdt_A BH3686; alpha-beta prot 93.9 0.025 8.5E-07 43.1 2.3 19 102-120 4-23 (189)
263 1ji0_A ABC transporter; ATP bi 93.9 0.027 9.4E-07 45.5 2.6 22 102-123 34-55 (240)
264 2ihy_A ABC transporter, ATP-bi 93.9 0.03 1E-06 46.4 2.9 22 102-123 49-70 (279)
265 2ehv_A Hypothetical protein PH 93.9 0.027 9.1E-07 44.4 2.5 19 102-120 32-51 (251)
266 3q5d_A Atlastin-1; G protein, 93.9 0.041 1.4E-06 48.9 3.9 63 98-160 65-153 (447)
267 4g1u_C Hemin import ATP-bindin 93.9 0.029 9.8E-07 46.2 2.6 22 102-123 39-60 (266)
268 3t61_A Gluconokinase; PSI-biol 93.9 0.026 8.9E-07 43.6 2.3 20 101-120 19-39 (202)
269 2ixe_A Antigen peptide transpo 93.9 0.031 1.1E-06 46.1 2.9 22 102-123 47-68 (271)
270 2ghi_A Transport protein; mult 93.8 0.032 1.1E-06 45.7 2.9 22 102-123 48-69 (260)
271 1tq4_A IIGP1, interferon-induc 93.8 0.029 9.9E-07 49.3 2.8 20 102-121 71-91 (413)
272 2p65_A Hypothetical protein PF 93.8 0.019 6.6E-07 42.7 1.4 20 102-121 45-65 (187)
273 4a74_A DNA repair and recombin 93.8 0.024 8.2E-07 44.1 2.0 20 102-121 27-47 (231)
274 2bbw_A Adenylate kinase 4, AK4 93.8 0.032 1.1E-06 44.6 2.7 20 101-120 28-48 (246)
275 1vpl_A ABC transporter, ATP-bi 93.8 0.031 1.1E-06 45.8 2.7 22 102-123 43-64 (256)
276 4eun_A Thermoresistant glucoki 93.8 0.028 9.5E-07 43.5 2.3 20 101-120 30-50 (200)
277 1qhx_A CPT, protein (chloramph 93.8 0.031 1.1E-06 42.0 2.5 21 101-121 4-25 (178)
278 2yz2_A Putative ABC transporte 93.7 0.032 1.1E-06 45.8 2.6 22 102-123 35-56 (266)
279 1kht_A Adenylate kinase; phosp 93.7 0.032 1.1E-06 42.0 2.5 20 101-120 4-24 (192)
280 2pjz_A Hypothetical protein ST 93.7 0.037 1.3E-06 45.6 2.9 21 102-122 32-52 (263)
281 3bos_A Putative DNA replicatio 93.6 0.031 1.1E-06 43.4 2.3 21 101-121 53-74 (242)
282 2nq2_C Hypothetical ABC transp 93.6 0.035 1.2E-06 45.3 2.6 22 102-123 33-54 (253)
283 3trf_A Shikimate kinase, SK; a 93.6 0.037 1.3E-06 41.8 2.7 20 101-120 6-26 (185)
284 2chg_A Replication factor C sm 93.5 0.032 1.1E-06 42.4 2.3 19 103-121 41-60 (226)
285 3lnc_A Guanylate kinase, GMP k 93.5 0.026 8.7E-07 44.7 1.7 19 102-120 29-48 (231)
286 1np6_A Molybdopterin-guanine d 93.5 0.033 1.1E-06 43.0 2.3 20 102-121 8-28 (174)
287 2xtz_A Guanine nucleotide-bind 93.5 0.054 1.8E-06 46.5 3.9 24 96-119 5-29 (354)
288 1njg_A DNA polymerase III subu 93.5 0.032 1.1E-06 42.8 2.3 20 102-121 47-67 (250)
289 2if2_A Dephospho-COA kinase; a 93.5 0.033 1.1E-06 42.9 2.3 21 101-121 2-23 (204)
290 2w0m_A SSO2452; RECA, SSPF, un 93.4 0.034 1.2E-06 43.1 2.3 19 102-120 25-44 (235)
291 1knq_A Gluconate kinase; ALFA/ 93.4 0.035 1.2E-06 41.7 2.3 20 101-120 9-29 (175)
292 3cm0_A Adenylate kinase; ATP-b 93.4 0.049 1.7E-06 41.1 3.1 21 100-120 4-25 (186)
293 3fvq_A Fe(3+) IONS import ATP- 93.4 0.032 1.1E-06 48.2 2.1 37 102-147 32-68 (359)
294 1e4v_A Adenylate kinase; trans 93.3 0.035 1.2E-06 43.4 2.2 21 101-121 1-22 (214)
295 3sr0_A Adenylate kinase; phosp 93.3 0.04 1.4E-06 43.6 2.5 20 101-120 1-21 (206)
296 2plr_A DTMP kinase, probable t 93.3 0.046 1.6E-06 41.9 2.8 20 101-120 5-25 (213)
297 1z47_A CYSA, putative ABC-tran 93.3 0.037 1.3E-06 47.7 2.4 22 102-123 43-64 (355)
298 3uie_A Adenylyl-sulfate kinase 93.2 0.038 1.3E-06 42.7 2.3 21 100-120 25-46 (200)
299 2it1_A 362AA long hypothetical 93.2 0.038 1.3E-06 47.7 2.5 22 102-123 31-52 (362)
300 3asz_A Uridine kinase; cytidin 93.2 0.038 1.3E-06 42.8 2.2 22 100-121 6-28 (211)
301 2yyz_A Sugar ABC transporter, 93.2 0.038 1.3E-06 47.7 2.4 22 102-123 31-52 (359)
302 2rhm_A Putative kinase; P-loop 93.2 0.037 1.3E-06 41.9 2.1 20 101-120 6-26 (193)
303 3rlf_A Maltose/maltodextrin im 93.2 0.039 1.3E-06 48.0 2.5 22 102-123 31-52 (381)
304 3n70_A Transport activator; si 93.1 0.051 1.7E-06 40.0 2.7 22 101-122 25-46 (145)
305 1g29_1 MALK, maltose transport 93.1 0.039 1.3E-06 47.8 2.4 22 102-123 31-52 (372)
306 2pt5_A Shikimate kinase, SK; a 93.1 0.049 1.7E-06 40.4 2.7 21 101-121 1-22 (168)
307 2onk_A Molybdate/tungstate ABC 93.1 0.044 1.5E-06 44.4 2.6 22 102-123 26-47 (240)
308 1v43_A Sugar-binding transport 93.1 0.041 1.4E-06 47.7 2.5 22 102-123 39-60 (372)
309 1cke_A CK, MSSA, protein (cyti 93.1 0.046 1.6E-06 42.6 2.5 20 101-120 6-26 (227)
310 2cvh_A DNA repair and recombin 93.1 0.042 1.4E-06 42.4 2.3 20 102-121 22-42 (220)
311 3co5_A Putative two-component 93.0 0.044 1.5E-06 40.3 2.2 22 102-123 29-50 (143)
312 1aky_A Adenylate kinase; ATP:A 92.9 0.05 1.7E-06 42.6 2.5 20 101-120 5-25 (220)
313 1n0w_A DNA repair protein RAD5 92.9 0.046 1.6E-06 42.9 2.3 20 102-121 26-46 (243)
314 3tlx_A Adenylate kinase 2; str 92.9 0.053 1.8E-06 43.6 2.8 22 100-121 29-51 (243)
315 1lw7_A Transcriptional regulat 92.9 0.038 1.3E-06 47.1 2.0 21 100-120 170-191 (365)
316 1zcb_A G alpha I/13; GTP-bindi 92.9 0.052 1.8E-06 46.8 2.8 21 99-119 32-53 (362)
317 2rcn_A Probable GTPase ENGC; Y 92.9 0.048 1.6E-06 47.1 2.6 23 102-124 217-240 (358)
318 2yvu_A Probable adenylyl-sulfa 92.9 0.071 2.4E-06 40.5 3.3 21 100-120 13-34 (186)
319 1tev_A UMP-CMP kinase; ploop, 92.9 0.061 2.1E-06 40.5 2.9 20 101-120 4-24 (196)
320 1rj9_A FTSY, signal recognitio 92.9 0.045 1.5E-06 46.0 2.3 20 101-120 103-123 (304)
321 2pze_A Cystic fibrosis transme 92.8 0.057 1.9E-06 43.2 2.8 22 102-123 36-57 (229)
322 2v54_A DTMP kinase, thymidylat 92.8 0.054 1.8E-06 41.4 2.5 21 101-121 5-26 (204)
323 2kjq_A DNAA-related protein; s 92.8 0.044 1.5E-06 41.0 2.0 20 101-120 37-57 (149)
324 3b85_A Phosphate starvation-in 92.8 0.05 1.7E-06 43.1 2.4 20 102-121 24-44 (208)
325 1jjv_A Dephospho-COA kinase; P 92.8 0.063 2.1E-06 41.4 2.9 21 101-121 3-24 (206)
326 1ixz_A ATP-dependent metallopr 92.8 0.049 1.7E-06 43.5 2.3 18 103-120 52-70 (254)
327 1ukz_A Uridylate kinase; trans 92.7 0.079 2.7E-06 40.7 3.4 20 101-120 16-36 (203)
328 2w58_A DNAI, primosome compone 92.7 0.05 1.7E-06 41.8 2.3 20 101-120 55-75 (202)
329 2eyu_A Twitching motility prot 92.7 0.05 1.7E-06 44.6 2.3 20 101-120 26-46 (261)
330 2vp4_A Deoxynucleoside kinase; 92.7 0.081 2.8E-06 41.9 3.5 22 100-121 20-42 (230)
331 3nh6_A ATP-binding cassette SU 92.7 0.042 1.4E-06 46.3 1.9 22 102-123 82-103 (306)
332 2qi9_C Vitamin B12 import ATP- 92.7 0.056 1.9E-06 44.1 2.6 22 102-123 28-49 (249)
333 1u0l_A Probable GTPase ENGC; p 92.7 0.053 1.8E-06 45.2 2.5 22 102-123 171-193 (301)
334 1via_A Shikimate kinase; struc 92.6 0.053 1.8E-06 40.8 2.2 19 102-120 6-25 (175)
335 1gvn_B Zeta; postsegregational 92.6 0.052 1.8E-06 45.0 2.4 20 101-120 34-54 (287)
336 4ido_A Atlastin-1; GTPase, GTP 92.6 0.13 4.5E-06 45.8 5.1 60 101-160 68-153 (457)
337 3b9q_A Chloroplast SRP recepto 92.6 0.051 1.7E-06 45.6 2.3 20 101-120 101-121 (302)
338 1zd8_A GTP:AMP phosphotransfer 92.6 0.055 1.9E-06 42.6 2.4 20 101-120 8-28 (227)
339 2f1r_A Molybdopterin-guanine d 92.6 0.024 8.2E-07 43.7 0.3 19 102-120 4-23 (171)
340 2d2e_A SUFC protein; ABC-ATPas 92.6 0.056 1.9E-06 43.9 2.5 21 102-122 31-51 (250)
341 3iij_A Coilin-interacting nucl 92.6 0.058 2E-06 40.7 2.4 20 101-120 12-32 (180)
342 2zu0_C Probable ATP-dependent 92.6 0.058 2E-06 44.3 2.6 21 102-122 48-68 (267)
343 3d31_A Sulfate/molybdate ABC t 92.6 0.034 1.2E-06 47.7 1.2 22 102-123 28-49 (348)
344 2xb4_A Adenylate kinase; ATP-b 92.6 0.063 2.2E-06 42.4 2.7 20 101-120 1-21 (223)
345 2v9p_A Replication protein E1; 92.5 0.056 1.9E-06 45.6 2.5 20 101-120 127-147 (305)
346 2pbr_A DTMP kinase, thymidylat 92.5 0.061 2.1E-06 40.6 2.5 20 102-121 2-22 (195)
347 1xjc_A MOBB protein homolog; s 92.5 0.062 2.1E-06 41.5 2.5 20 102-121 6-26 (169)
348 2z0h_A DTMP kinase, thymidylat 92.5 0.062 2.1E-06 40.8 2.5 20 102-121 2-22 (197)
349 1y63_A LMAJ004144AAA protein; 92.5 0.073 2.5E-06 40.6 2.9 22 100-121 10-32 (184)
350 3gd7_A Fusion complex of cysti 92.5 0.05 1.7E-06 47.4 2.1 21 102-122 49-69 (390)
351 3tui_C Methionine import ATP-b 92.4 0.057 2E-06 46.8 2.5 21 102-122 56-76 (366)
352 3e70_C DPA, signal recognition 92.4 0.056 1.9E-06 45.9 2.3 22 100-121 129-151 (328)
353 2dr3_A UPF0273 protein PH0284; 92.4 0.057 1.9E-06 42.4 2.2 20 102-121 25-45 (247)
354 2qen_A Walker-type ATPase; unk 92.4 0.058 2E-06 44.4 2.3 21 102-122 33-54 (350)
355 2qt1_A Nicotinamide riboside k 92.3 0.085 2.9E-06 40.8 3.1 22 100-121 21-43 (207)
356 2yv5_A YJEQ protein; hydrolase 92.3 0.061 2.1E-06 44.9 2.5 20 101-120 166-186 (302)
357 1gtv_A TMK, thymidylate kinase 92.3 0.023 7.7E-07 44.0 -0.3 19 102-120 2-21 (214)
358 1cr0_A DNA primase/helicase; R 92.2 0.055 1.9E-06 44.4 2.0 20 102-121 37-57 (296)
359 1zak_A Adenylate kinase; ATP:A 92.2 0.053 1.8E-06 42.5 1.8 20 101-120 6-26 (222)
360 1lv7_A FTSH; alpha/beta domain 92.1 0.065 2.2E-06 42.9 2.3 19 102-120 47-66 (257)
361 1cip_A Protein (guanine nucleo 92.1 0.081 2.8E-06 45.4 3.0 22 98-119 30-52 (353)
362 1ak2_A Adenylate kinase isoenz 92.1 0.077 2.6E-06 42.0 2.6 20 101-120 17-37 (233)
363 2bwj_A Adenylate kinase 5; pho 92.0 0.069 2.4E-06 40.6 2.3 21 101-121 13-34 (199)
364 2fna_A Conserved hypothetical 92.0 0.059 2E-06 44.4 2.0 20 102-121 32-52 (357)
365 2x8a_A Nuclear valosin-contain 92.0 0.068 2.3E-06 43.9 2.3 18 103-120 47-65 (274)
366 2qz4_A Paraplegin; AAA+, SPG7, 91.9 0.072 2.5E-06 42.3 2.4 19 102-120 41-60 (262)
367 1iy2_A ATP-dependent metallopr 91.9 0.071 2.4E-06 43.4 2.3 18 103-120 76-94 (278)
368 3be4_A Adenylate kinase; malar 91.9 0.071 2.4E-06 41.8 2.3 20 101-120 6-26 (217)
369 3h4m_A Proteasome-activating n 91.9 0.069 2.4E-06 43.2 2.3 19 102-120 53-72 (285)
370 3aez_A Pantothenate kinase; tr 91.9 0.07 2.4E-06 44.9 2.3 21 100-120 90-111 (312)
371 2c95_A Adenylate kinase 1; tra 91.9 0.077 2.6E-06 40.2 2.4 20 101-120 10-30 (196)
372 2wwf_A Thymidilate kinase, put 91.9 0.075 2.6E-06 40.9 2.3 21 100-120 10-31 (212)
373 1oxx_K GLCV, glucose, ABC tran 91.9 0.035 1.2E-06 47.7 0.5 22 102-123 33-54 (353)
374 1e6c_A Shikimate kinase; phosp 91.9 0.083 2.8E-06 39.3 2.5 19 102-120 4-23 (173)
375 1qf9_A UMP/CMP kinase, protein 91.8 0.081 2.8E-06 39.8 2.4 20 101-120 7-27 (194)
376 2qby_A CDC6 homolog 1, cell di 91.8 0.067 2.3E-06 44.5 2.1 20 102-121 47-67 (386)
377 1nn5_A Similar to deoxythymidy 91.8 0.08 2.7E-06 40.7 2.4 21 100-120 9-30 (215)
378 2ze6_A Isopentenyl transferase 91.8 0.077 2.6E-06 43.0 2.3 19 102-120 3-22 (253)
379 2r8r_A Sensor protein; KDPD, P 91.7 0.096 3.3E-06 42.5 2.8 21 100-120 6-27 (228)
380 1uj2_A Uridine-cytidine kinase 91.7 0.095 3.2E-06 42.1 2.8 22 100-121 22-44 (252)
381 2bbs_A Cystic fibrosis transme 91.7 0.081 2.8E-06 44.1 2.5 22 102-123 66-87 (290)
382 2vli_A Antibiotic resistance p 91.7 0.073 2.5E-06 40.0 2.0 20 101-120 6-26 (183)
383 2og2_A Putative signal recogni 91.6 0.077 2.6E-06 45.7 2.3 21 100-120 157-178 (359)
384 3kta_A Chromosome segregation 91.6 0.075 2.6E-06 40.0 2.0 18 102-119 28-46 (182)
385 3a4m_A L-seryl-tRNA(SEC) kinas 91.6 0.086 3E-06 42.7 2.5 21 101-121 5-26 (260)
386 1in4_A RUVB, holliday junction 91.5 0.081 2.8E-06 44.5 2.3 19 102-120 53-71 (334)
387 1rz3_A Hypothetical protein rb 91.5 0.079 2.7E-06 41.0 2.1 21 100-120 22-43 (201)
388 1ofh_A ATP-dependent HSL prote 91.5 0.086 2.9E-06 42.8 2.3 19 102-120 52-71 (310)
389 3b9p_A CG5977-PA, isoform A; A 91.4 0.083 2.8E-06 43.0 2.2 20 101-120 55-75 (297)
390 1uf9_A TT1252 protein; P-loop, 91.4 0.1 3.4E-06 39.8 2.5 23 100-122 8-31 (203)
391 3syl_A Protein CBBX; photosynt 91.4 0.11 3.8E-06 42.4 3.0 20 101-120 68-88 (309)
392 2zts_A Putative uncharacterize 91.3 0.098 3.3E-06 41.0 2.5 20 102-121 32-52 (251)
393 1nlf_A Regulatory protein REPA 91.3 0.079 2.7E-06 43.1 2.0 20 102-121 32-52 (279)
394 1odf_A YGR205W, hypothetical 3 91.3 0.13 4.4E-06 42.8 3.3 20 100-119 31-51 (290)
395 2jeo_A Uridine-cytidine kinase 91.3 0.092 3.1E-06 42.0 2.3 22 100-121 25-47 (245)
396 2p5t_B PEZT; postsegregational 91.2 0.11 3.6E-06 41.9 2.6 21 100-120 32-53 (253)
397 1t9h_A YLOQ, probable GTPase E 91.2 0.034 1.2E-06 46.9 -0.3 23 101-123 174-197 (307)
398 2yhs_A FTSY, cell division pro 91.2 0.089 3E-06 47.5 2.3 21 100-120 293-314 (503)
399 2iyv_A Shikimate kinase, SK; t 91.2 0.1 3.5E-06 39.3 2.4 19 102-120 4-23 (184)
400 2pez_A Bifunctional 3'-phospho 91.1 0.1 3.5E-06 39.3 2.3 22 100-121 5-27 (179)
401 1fnn_A CDC6P, cell division co 91.1 0.096 3.3E-06 43.8 2.3 20 102-121 46-66 (389)
402 1l8q_A Chromosomal replication 91.0 0.095 3.2E-06 43.4 2.2 20 102-121 39-59 (324)
403 2qmh_A HPR kinase/phosphorylas 91.0 0.12 4E-06 41.4 2.6 23 100-122 34-57 (205)
404 1d2n_A N-ethylmaleimide-sensit 90.9 0.1 3.5E-06 42.1 2.3 21 100-120 64-85 (272)
405 1m7g_A Adenylylsulfate kinase; 90.9 0.11 3.6E-06 40.5 2.3 20 101-120 26-46 (211)
406 4eaq_A DTMP kinase, thymidylat 90.7 0.11 3.8E-06 41.4 2.3 22 100-121 26-48 (229)
407 2v1u_A Cell division control p 90.6 0.095 3.3E-06 43.7 1.9 20 102-121 46-66 (387)
408 3szr_A Interferon-induced GTP- 90.6 0.081 2.8E-06 48.5 1.5 20 103-122 48-68 (608)
409 2obl_A ESCN; ATPase, hydrolase 90.6 0.11 3.8E-06 44.4 2.3 21 102-122 73-94 (347)
410 1yqt_A RNAse L inhibitor; ATP- 90.6 0.12 4.2E-06 46.6 2.7 23 102-124 49-71 (538)
411 4a82_A Cystic fibrosis transme 90.6 0.15 5.2E-06 46.3 3.3 23 102-124 369-391 (578)
412 3t15_A Ribulose bisphosphate c 90.6 0.1 3.6E-06 43.1 2.0 20 101-120 37-57 (293)
413 2px0_A Flagellar biosynthesis 90.6 0.1 3.5E-06 43.5 2.0 20 101-120 106-126 (296)
414 3zvl_A Bifunctional polynucleo 90.5 0.4 1.4E-05 41.7 5.9 22 100-121 258-280 (416)
415 1vht_A Dephospho-COA kinase; s 90.5 0.15 5.2E-06 39.6 2.9 22 100-121 4-26 (218)
416 1azs_C GS-alpha; complex (lyas 90.5 0.13 4.5E-06 45.0 2.7 20 98-117 38-57 (402)
417 2ewv_A Twitching motility prot 90.5 0.12 4.2E-06 44.4 2.5 21 101-121 137-158 (372)
418 1sq5_A Pantothenate kinase; P- 90.5 0.11 3.7E-06 43.3 2.1 22 100-121 80-102 (308)
419 1z6t_A APAF-1, apoptotic prote 90.4 0.13 4.5E-06 46.1 2.7 21 102-122 149-170 (591)
420 3jvv_A Twitching mobility prot 90.4 0.12 3.9E-06 44.5 2.3 20 102-121 125-145 (356)
421 4e22_A Cytidylate kinase; P-lo 90.4 0.14 4.9E-06 41.2 2.7 21 100-120 27-48 (252)
422 3b60_A Lipid A export ATP-bind 90.4 0.15 5.1E-06 46.3 3.1 22 102-123 371-392 (582)
423 2yl4_A ATP-binding cassette SU 90.4 0.15 5.2E-06 46.4 3.2 23 102-124 372-394 (595)
424 4fcw_A Chaperone protein CLPB; 90.4 0.12 4.2E-06 42.1 2.3 20 101-120 48-68 (311)
425 1sxj_E Activator 1 40 kDa subu 90.4 0.11 3.9E-06 43.2 2.2 19 103-121 39-58 (354)
426 3b5x_A Lipid A export ATP-bind 90.3 0.17 5.8E-06 45.9 3.4 22 102-123 371-392 (582)
427 3umf_A Adenylate kinase; rossm 90.3 0.13 4.5E-06 41.1 2.4 21 100-120 28-50 (217)
428 2gza_A Type IV secretion syste 90.3 0.12 4E-06 44.3 2.1 19 102-120 177-196 (361)
429 3cf0_A Transitional endoplasmi 90.2 0.13 4.3E-06 42.6 2.2 19 102-120 51-70 (301)
430 3uk6_A RUVB-like 2; hexameric 90.1 0.12 3.9E-06 43.4 2.0 20 101-120 71-91 (368)
431 2pt7_A CAG-ALFA; ATPase, prote 90.1 0.14 4.7E-06 43.4 2.4 21 102-122 173-193 (330)
432 1sxj_D Activator 1 41 kDa subu 90.1 0.13 4.5E-06 42.5 2.3 19 103-121 61-80 (353)
433 3qf4_B Uncharacterized ABC tra 90.1 0.18 6E-06 46.0 3.3 23 102-124 383-405 (598)
434 1vma_A Cell division protein F 90.0 0.14 4.7E-06 43.1 2.3 20 101-120 105-125 (306)
435 2qby_B CDC6 homolog 3, cell di 90.0 0.12 4.2E-06 43.3 2.1 20 102-121 47-67 (384)
436 3pxg_A Negative regulator of g 90.0 0.14 4.8E-06 45.2 2.5 20 101-120 202-222 (468)
437 1ltq_A Polynucleotide kinase; 90.0 0.15 5.1E-06 41.6 2.5 21 101-121 3-24 (301)
438 3tqc_A Pantothenate kinase; bi 89.9 0.14 4.8E-06 43.4 2.3 20 100-119 92-112 (321)
439 3pfi_A Holliday junction ATP-d 89.9 0.15 5E-06 42.4 2.4 19 102-120 57-76 (338)
440 1p5z_B DCK, deoxycytidine kina 89.9 0.18 6.2E-06 40.6 2.9 21 100-120 24-45 (263)
441 1zuh_A Shikimate kinase; alpha 89.8 0.18 6.2E-06 37.4 2.7 20 101-120 8-28 (168)
442 1sxj_C Activator 1 40 kDa subu 89.8 0.14 4.7E-06 42.8 2.2 19 103-121 49-68 (340)
443 3qf4_A ABC transporter, ATP-bi 89.8 0.2 6.9E-06 45.6 3.4 23 102-124 371-393 (587)
444 3nwj_A ATSK2; P loop, shikimat 89.6 0.14 4.9E-06 41.7 2.1 20 101-120 49-69 (250)
445 2dpy_A FLII, flagellum-specifi 89.6 0.15 5.1E-06 45.0 2.3 21 102-122 159-180 (438)
446 2bjv_A PSP operon transcriptio 89.4 0.17 5.9E-06 40.5 2.4 20 101-120 30-50 (265)
447 1xwi_A SKD1 protein; VPS4B, AA 89.4 0.16 5.3E-06 42.6 2.2 20 101-120 46-66 (322)
448 1nij_A Hypothetical protein YJ 89.4 0.13 4.3E-06 43.1 1.7 20 103-122 7-27 (318)
449 3eie_A Vacuolar protein sortin 89.4 0.16 5.4E-06 42.3 2.2 20 101-120 52-72 (322)
450 2r62_A Cell division protease 89.2 0.078 2.7E-06 42.5 0.2 18 103-120 47-65 (268)
451 1hqc_A RUVB; extended AAA-ATPa 89.0 0.14 4.8E-06 42.0 1.7 19 102-120 40-59 (324)
452 3a8t_A Adenylate isopentenyltr 89.0 0.2 6.9E-06 42.9 2.6 20 102-121 42-62 (339)
453 2a5y_B CED-4; apoptosis; HET: 88.9 0.18 6.1E-06 45.2 2.4 21 101-121 153-174 (549)
454 1um8_A ATP-dependent CLP prote 88.9 0.19 6.6E-06 42.6 2.5 20 101-120 73-93 (376)
455 3bk7_A ABC transporter ATP-bin 88.9 0.21 7.3E-06 45.8 2.9 23 102-124 119-141 (607)
456 3tqf_A HPR(Ser) kinase; transf 88.7 0.2 6.8E-06 39.2 2.2 22 101-122 17-39 (181)
457 2f6r_A COA synthase, bifunctio 88.7 0.25 8.6E-06 40.5 3.0 21 100-120 75-96 (281)
458 2npi_A Protein CLP1; CLP1-PCF1 88.7 0.17 5.7E-06 45.0 2.0 21 102-122 140-160 (460)
459 3ozx_A RNAse L inhibitor; ATP 88.7 0.21 7.2E-06 45.2 2.7 22 102-123 27-48 (538)
460 1iqp_A RFCS; clamp loader, ext 88.6 0.2 6.9E-06 40.8 2.4 19 103-121 49-68 (327)
461 3j16_B RLI1P; ribosome recycli 88.6 0.2 6.7E-06 46.1 2.5 21 102-122 105-125 (608)
462 2qgz_A Helicase loader, putati 88.6 0.2 6.8E-06 41.8 2.3 21 100-120 152-173 (308)
463 1jr3_A DNA polymerase III subu 88.6 0.2 7E-06 41.7 2.4 20 102-121 40-60 (373)
464 1w5s_A Origin recognition comp 88.5 0.16 5.3E-06 43.0 1.6 20 102-121 52-74 (412)
465 1g8p_A Magnesium-chelatase 38 88.5 0.14 4.7E-06 42.5 1.2 19 102-120 47-66 (350)
466 1p9r_A General secretion pathw 88.5 0.2 6.7E-06 44.0 2.3 20 102-121 169-189 (418)
467 3exa_A TRNA delta(2)-isopenten 88.4 0.22 7.4E-06 42.4 2.4 20 102-121 5-25 (322)
468 1f2t_A RAD50 ABC-ATPase; DNA d 88.4 0.24 8.3E-06 36.8 2.5 15 103-117 26-40 (149)
469 1pzn_A RAD51, DNA repair and r 88.3 0.19 6.4E-06 42.8 2.0 21 101-121 132-153 (349)
470 3fwy_A Light-independent proto 88.3 0.26 8.8E-06 41.5 2.8 18 102-119 50-68 (314)
471 3d8b_A Fidgetin-like protein 1 88.3 0.21 7.2E-06 42.3 2.3 21 100-120 117-138 (357)
472 1sxj_B Activator 1 37 kDa subu 88.3 0.22 7.4E-06 40.5 2.3 19 103-121 45-64 (323)
473 3r20_A Cytidylate kinase; stru 88.2 0.26 8.7E-06 39.9 2.7 21 100-120 9-30 (233)
474 1ojl_A Transcriptional regulat 88.2 0.23 7.8E-06 41.3 2.4 20 101-120 26-45 (304)
475 3bh0_A DNAB-like replicative h 88.1 0.24 8.1E-06 41.4 2.5 20 102-121 70-90 (315)
476 2qp9_X Vacuolar protein sortin 88.1 0.22 7.4E-06 42.3 2.3 20 101-120 85-105 (355)
477 2v3c_C SRP54, signal recogniti 88.1 0.2 6.9E-06 44.1 2.1 21 101-121 100-121 (432)
478 2chq_A Replication factor C sm 88.1 0.22 7.7E-06 40.3 2.3 19 103-121 41-60 (319)
479 1q3t_A Cytidylate kinase; nucl 88.1 0.26 8.9E-06 39.0 2.6 23 99-121 15-38 (236)
480 2r44_A Uncharacterized protein 88.0 0.15 5.2E-06 42.2 1.3 19 102-120 48-67 (331)
481 3hws_A ATP-dependent CLP prote 87.9 0.25 8.4E-06 41.7 2.5 17 101-117 52-68 (363)
482 1tue_A Replication protein E1; 87.9 0.17 6E-06 40.5 1.4 19 102-120 60-79 (212)
483 3crm_A TRNA delta(2)-isopenten 87.8 0.24 8.2E-06 42.1 2.3 20 101-120 6-26 (323)
484 3lda_A DNA repair protein RAD5 87.8 0.22 7.6E-06 43.4 2.2 19 102-120 180-199 (400)
485 2oap_1 GSPE-2, type II secreti 87.6 0.24 8.2E-06 44.5 2.3 20 102-121 262-282 (511)
486 3vfd_A Spastin; ATPase, microt 87.5 0.26 8.9E-06 42.1 2.4 20 101-120 149-169 (389)
487 1svm_A Large T antigen; AAA+ f 87.5 0.25 8.5E-06 42.8 2.3 20 101-120 170-190 (377)
488 2orw_A Thymidine kinase; TMTK, 87.4 0.26 8.9E-06 37.9 2.2 19 103-121 6-25 (184)
489 1c9k_A COBU, adenosylcobinamid 87.4 0.29 9.8E-06 38.1 2.4 20 103-122 2-22 (180)
490 3d3q_A TRNA delta(2)-isopenten 87.4 0.27 9.4E-06 42.0 2.5 21 101-121 8-29 (340)
491 3foz_A TRNA delta(2)-isopenten 87.4 0.26 9E-06 41.8 2.3 20 102-121 12-32 (316)
492 3euj_A Chromosome partition pr 87.2 0.26 8.9E-06 44.1 2.3 19 102-120 31-50 (483)
493 4b4t_K 26S protease regulatory 87.2 0.27 9.1E-06 43.4 2.4 19 102-120 208-227 (428)
494 1zu4_A FTSY; GTPase, signal re 87.2 0.27 9.2E-06 41.4 2.3 20 101-120 106-126 (320)
495 1tf7_A KAIC; homohexamer, hexa 87.1 0.25 8.6E-06 44.2 2.2 18 103-120 42-60 (525)
496 3ake_A Cytidylate kinase; CMP 87.0 0.33 1.1E-05 36.9 2.5 20 102-121 4-24 (208)
497 2z4s_A Chromosomal replication 87.0 0.27 9.2E-06 43.1 2.2 19 102-120 132-151 (440)
498 3pvs_A Replication-associated 86.9 0.27 9.4E-06 43.3 2.3 19 102-120 52-71 (447)
499 3kl4_A SRP54, signal recogniti 86.9 0.26 8.7E-06 43.6 2.1 21 100-120 97-118 (433)
500 3f9v_A Minichromosome maintena 86.7 0.3 1E-05 44.7 2.5 24 101-124 328-351 (595)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.94 E-value=1.5e-27 Score=194.54 Aligned_cols=98 Identities=21% Similarity=0.457 Sum_probs=83.2
Q ss_pred CCceeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcE
Q 029430 96 SDLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVA 173 (193)
Q Consensus 96 ~~~~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~ 173 (193)
.+..+|||+|||++|||||||+ ||++++|. .+.||+|.++..+.+.+++..+.++||||+|||+|..+++.|++++++
T Consensus 9 ~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~ 88 (216)
T 4dkx_A 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAA 88 (216)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSE
T ss_pred CCCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccE
Confidence 3456899999999999999999 99999999 889999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHhcC
Q 029430 174 ILFMFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 174 illvyDit~~~Sf~~l~~W~ 193 (193)
+|+|||+++++||+++.+|+
T Consensus 89 ~ilv~di~~~~Sf~~i~~~~ 108 (216)
T 4dkx_A 89 AVVVYDITNVNSFQQTTKWI 108 (216)
T ss_dssp EEEEEETTCHHHHHTHHHHH
T ss_pred EEEEeecchhHHHHHHHHHH
Confidence 99999999999999999994
No 2
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.86 E-value=1.1e-21 Score=151.06 Aligned_cols=96 Identities=24% Similarity=0.434 Sum_probs=89.7
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECC-eEEEEEEEeCCCCCCCCcchhhhccCCcEE
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQG-ARIAFSIWDVGGDSRSFDHVPIACKDAVAI 174 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~-~~v~l~iwD~~G~e~~~~~~~~~~~~a~~i 174 (193)
...+||+++|++|||||||+ +|.++.|. .+.+|+|.++..+.+.+++ ..+.+++||++|++++..++..+++++|++
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 83 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGV 83 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEE
Confidence 34799999999999999999 99999998 7788999999999999987 689999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHhcC
Q 029430 175 LFMFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 175 llvyDit~~~Sf~~l~~W~ 193 (193)
|+|||++++++|+++..|+
T Consensus 84 i~v~d~~~~~s~~~~~~~~ 102 (178)
T 2hxs_A 84 LLVYDITNYQSFENLEDWY 102 (178)
T ss_dssp EEEEETTCHHHHHTHHHHH
T ss_pred EEEEECCCHHHHHHHHHHH
Confidence 9999999999999998884
No 3
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.86 E-value=1.5e-21 Score=153.22 Aligned_cols=96 Identities=20% Similarity=0.373 Sum_probs=86.5
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEE
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~il 175 (193)
...+||+++|++|||||||+ +|+++++. .+.+++|.++..+.+.+++..+.++|||++|+++|..++..++++++++|
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 98 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 98 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEE
Confidence 45899999999999999999 99999998 67789999998899999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHhcC
Q 029430 176 FMFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 176 lvyDit~~~Sf~~l~~W~ 193 (193)
+|||++++++|+++.+|+
T Consensus 99 ~v~d~~~~~s~~~~~~~l 116 (191)
T 2a5j_A 99 LVYDITRRETFNHLTSWL 116 (191)
T ss_dssp EEEETTCHHHHHTHHHHH
T ss_pred EEEECCCHHHHHHHHHHH
Confidence 999999999999999884
No 4
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.86 E-value=2.3e-21 Score=152.27 Aligned_cols=94 Identities=13% Similarity=0.133 Sum_probs=82.2
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEE
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~il 175 (193)
...+||+++|++|||||||+ +|+++.|. .+.+|++.++ ...+.+++..+.++|||++|+++|..+ ..++++++++|
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~i 96 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFL 96 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEE
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEE
Confidence 34799999999999999999 99999988 7888998776 467788999999999999999999886 67999999999
Q ss_pred EEEECCChhhHHHHHhcC
Q 029430 176 FMFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 176 lvyDit~~~Sf~~l~~W~ 193 (193)
+|||+++++||+++.+|+
T Consensus 97 lv~d~~~~~s~~~~~~~~ 114 (187)
T 3c5c_A 97 VVYSVDSRQSFDSSSSYL 114 (187)
T ss_dssp EEEETTCHHHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHH
Confidence 999999999999999884
No 5
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.85 E-value=6.5e-21 Score=149.09 Aligned_cols=95 Identities=24% Similarity=0.481 Sum_probs=89.8
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEE
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 176 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~ill 176 (193)
..+||+++|++|||||||+ +++++.+. .+.+++|.++..+.+.+++..+.+.+||++|++++..++..+++.+|++|+
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 100 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLL 100 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEEE
Confidence 4799999999999999999 99999998 778899999988889999999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHhcC
Q 029430 177 MFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 177 vyDit~~~Sf~~l~~W~ 193 (193)
|||++++++|+.+.+|+
T Consensus 101 v~d~~~~~s~~~~~~~~ 117 (189)
T 2gf9_A 101 MYDIANQESFAAVQDWA 117 (189)
T ss_dssp EEETTCHHHHHTHHHHH
T ss_pred EEECCCHHHHHHHHHHH
Confidence 99999999999998884
No 6
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.85 E-value=1.1e-21 Score=156.02 Aligned_cols=96 Identities=27% Similarity=0.451 Sum_probs=82.8
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEE
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~il 175 (193)
...+||+++|++|||||||+ +|+++.|. .+.+|++.++..+.+.+++..+.++|||++|+++|..++..+++++|++|
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAI 106 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEE
Confidence 45799999999999999999 99999998 78889999998899999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHhcC
Q 029430 176 FMFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 176 lvyDit~~~Sf~~l~~W~ 193 (193)
+|||++++++|+++.+|+
T Consensus 107 lv~D~~~~~s~~~~~~~~ 124 (201)
T 2hup_A 107 LAYDITKRSSFLSVPHWI 124 (201)
T ss_dssp EEEETTBHHHHHTHHHHH
T ss_pred EEEECCCHHHHHHHHHHH
Confidence 999999999999999884
No 7
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.85 E-value=1.8e-21 Score=155.62 Aligned_cols=96 Identities=22% Similarity=0.402 Sum_probs=90.8
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEE
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~il 175 (193)
...+||+++|++|||||||+ +|+++.|. .+.+|++.++..+.+.+++..+.+++||++|+++|..++..+++++|++|
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 103 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI 103 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 35799999999999999999 99999998 78889999999999999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHhcC
Q 029430 176 FMFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 176 lvyDit~~~Sf~~l~~W~ 193 (193)
+|||++++++|+++.+|+
T Consensus 104 ~v~D~~~~~s~~~~~~~~ 121 (201)
T 2ew1_A 104 LTYDITCEESFRCLPEWL 121 (201)
T ss_dssp EEEETTCHHHHHTHHHHH
T ss_pred EEEECCCHHHHHHHHHHH
Confidence 999999999999999884
No 8
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.85 E-value=2e-21 Score=150.60 Aligned_cols=95 Identities=22% Similarity=0.473 Sum_probs=67.9
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEE
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 176 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~ill 176 (193)
..+||+++|++|||||||+ +|.++.+. .+.+|++.++..+.+.+++..+.+++||++|+++|..++..+++++|++|+
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 86 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIML 86 (183)
T ss_dssp EEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEE
Confidence 4799999999999999999 99999988 788899999988899999999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHhcC
Q 029430 177 MFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 177 vyDit~~~Sf~~l~~W~ 193 (193)
|||++++++|+++.+|+
T Consensus 87 v~d~~~~~s~~~~~~~~ 103 (183)
T 2fu5_C 87 VYDITNEKSFDNIRNWI 103 (183)
T ss_dssp EEETTCHHHHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHH
Confidence 99999999999999884
No 9
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.85 E-value=2.6e-21 Score=155.56 Aligned_cols=97 Identities=23% Similarity=0.360 Sum_probs=85.1
Q ss_pred CCceeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcE
Q 029430 96 SDLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVA 173 (193)
Q Consensus 96 ~~~~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~ 173 (193)
.....+||+++|++|||||||+ +|+++.|. .+.+|++.++ .+.+.+++..+.++|||++|+++|..++..+++++|+
T Consensus 23 ~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 101 (214)
T 3q3j_B 23 PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA 101 (214)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred CccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeE
Confidence 3345899999999999999999 99999998 7788998877 5778889999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHH-HHhcC
Q 029430 174 ILFMFDLTSRCTLNR-FDHNQ 193 (193)
Q Consensus 174 illvyDit~~~Sf~~-l~~W~ 193 (193)
+|+|||+++++||++ +..|+
T Consensus 102 ~i~v~d~~~~~s~~~~~~~~~ 122 (214)
T 3q3j_B 102 VLLCFDISRPETVDSALKKWR 122 (214)
T ss_dssp EEEEEETTCTHHHHHHHTHHH
T ss_pred EEEEEECcCHHHHHHHHHHHH
Confidence 999999999999999 68884
No 10
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.85 E-value=5.2e-21 Score=145.90 Aligned_cols=96 Identities=28% Similarity=0.557 Sum_probs=83.6
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEE
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~il 175 (193)
...+||+++|++|||||||+ +++++.+. .+.++++.++..+.+.+++..+.+.+||++|++++..++..+++++|++|
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI 83 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEE
Confidence 35799999999999999999 99999988 78889999998889999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHhcC
Q 029430 176 FMFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 176 lvyDit~~~Sf~~l~~W~ 193 (193)
+|||++++++|+++.+|+
T Consensus 84 ~v~d~~~~~s~~~~~~~~ 101 (170)
T 1z08_A 84 LVYDITDEDSFQKVKNWV 101 (170)
T ss_dssp EEEETTCHHHHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHH
Confidence 999999999999999884
No 11
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.84 E-value=7.3e-21 Score=144.54 Aligned_cols=95 Identities=26% Similarity=0.505 Sum_probs=89.8
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEE
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 176 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~ill 176 (193)
..+||+++|++|||||||+ +++++.+. .+.++.|.++..+.+.+++..+.+.+||++|++++..++..+++++|++|+
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 4789999999999999999 99999988 788899999988899999999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHhcC
Q 029430 177 MFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 177 vyDit~~~Sf~~l~~W~ 193 (193)
|||++++++|+++.+|+
T Consensus 82 v~d~~~~~s~~~~~~~~ 98 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWV 98 (170)
T ss_dssp EEETTCHHHHHHHHHHH
T ss_pred EEecCChHHHHHHHHHH
Confidence 99999999999999884
No 12
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.84 E-value=5.1e-21 Score=148.31 Aligned_cols=97 Identities=12% Similarity=0.207 Sum_probs=89.3
Q ss_pred CCceeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcE
Q 029430 96 SDLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVA 173 (193)
Q Consensus 96 ~~~~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~ 173 (193)
.....+||+++|++|||||||+ +|+++.+. .+.++++.++ ...+.+++..+.+++||++|++++..++..+++++|+
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 92 (183)
T 3kkq_A 14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDG 92 (183)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSE
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence 3455899999999999999999 99999988 7778888777 6888899999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHhcC
Q 029430 174 ILFMFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 174 illvyDit~~~Sf~~l~~W~ 193 (193)
+|+|||+++++||+++.+|+
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~ 112 (183)
T 3kkq_A 93 FLIVYSVTDKASFEHVDRFH 112 (183)
T ss_dssp EEEEEETTCHHHHHTHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHH
Confidence 99999999999999999884
No 13
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.84 E-value=7.9e-21 Score=144.36 Aligned_cols=96 Identities=24% Similarity=0.507 Sum_probs=90.2
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEE
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~il 175 (193)
...+||+++|++|||||||+ +++++.+. .+.++.+.++..+.+.+++..+.+.+||++|++++..++..+++++|++|
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI 83 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence 45799999999999999999 99999988 67789999998899999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHhcC
Q 029430 176 FMFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 176 lvyDit~~~Sf~~l~~W~ 193 (193)
+|||++++++|+++.+|+
T Consensus 84 ~v~d~~~~~s~~~~~~~~ 101 (170)
T 1r2q_A 84 VVYDITNEESFARAKNWV 101 (170)
T ss_dssp EEEETTCHHHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHH
Confidence 999999999999998884
No 14
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.84 E-value=7.2e-21 Score=146.00 Aligned_cols=96 Identities=22% Similarity=0.412 Sum_probs=90.2
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEE
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~il 175 (193)
...+||+++|+.|||||||+ ++.++.+. .+.++++.++..+.+.+++..+.+.+||++|++++..++..+++++|++|
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 92 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 92 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEEE
Confidence 45899999999999999999 99999988 67789999998899999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHhcC
Q 029430 176 FMFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 176 lvyDit~~~Sf~~l~~W~ 193 (193)
+|||++++++|+++..|+
T Consensus 93 ~v~d~~~~~s~~~~~~~~ 110 (179)
T 1z0f_A 93 MVYDITRRSTYNHLSSWL 110 (179)
T ss_dssp EEEETTCHHHHHTHHHHH
T ss_pred EEEeCcCHHHHHHHHHHH
Confidence 999999999999998884
No 15
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.84 E-value=1.1e-20 Score=145.76 Aligned_cols=97 Identities=29% Similarity=0.522 Sum_probs=90.5
Q ss_pred CceeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEE
Q 029430 97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 174 (193)
Q Consensus 97 ~~~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~i 174 (193)
+...+||+++|++|||||||+ +++++++. .+.++++.++..+.+.+++..+.+++||++|++++..++..+++.+|++
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 88 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 88 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEE
T ss_pred CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEE
Confidence 455899999999999999999 99999998 6778999999889999999999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHhcC
Q 029430 175 LFMFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 175 llvyDit~~~Sf~~l~~W~ 193 (193)
|+|||++++.+|+++.+|+
T Consensus 89 i~v~d~~~~~s~~~~~~~~ 107 (181)
T 2efe_B 89 IIVFDVTNQASFERAKKWV 107 (181)
T ss_dssp EEEEETTCHHHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHH
Confidence 9999999999999999884
No 16
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.84 E-value=1.4e-20 Score=144.65 Aligned_cols=96 Identities=19% Similarity=0.411 Sum_probs=89.2
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEE
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~il 175 (193)
...+||+++|++|||||||+ +++++.+. .+.++++.++....+.+++..+.+.+||++|++.+..++..+++++|++|
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 86 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVI 86 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEE
Confidence 35799999999999999999 99999988 78889999999999999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHhcC
Q 029430 176 FMFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 176 lvyDit~~~Sf~~l~~W~ 193 (193)
+|||++++++|+++..|+
T Consensus 87 ~v~d~~~~~s~~~~~~~~ 104 (181)
T 3tw8_B 87 VVYDVTSAESFVNVKRWL 104 (181)
T ss_dssp EEEETTCHHHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHH
Confidence 999999999999999884
No 17
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.84 E-value=1.2e-20 Score=148.66 Aligned_cols=96 Identities=22% Similarity=0.318 Sum_probs=79.8
Q ss_pred CceeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEE
Q 029430 97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 174 (193)
Q Consensus 97 ~~~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~i 174 (193)
....+||+++|++|||||||+ +|+++.|. .+.+|++..+ ...+.+++..+.+++||++|+++|..++..+++++|++
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 95 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIF 95 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEE
Confidence 345799999999999999999 99999988 7778887665 56788899999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHH-hcC
Q 029430 175 LFMFDLTSRCTLNRFD-HNQ 193 (193)
Q Consensus 175 llvyDit~~~Sf~~l~-~W~ 193 (193)
|+|||++++++|+++. .|+
T Consensus 96 i~v~d~~~~~s~~~~~~~~~ 115 (201)
T 2q3h_A 96 LLCFSVVSPSSFQNVSEKWV 115 (201)
T ss_dssp EEEEETTCHHHHHHHHHTHH
T ss_pred EEEEECCCHHHHHHHHHHHH
Confidence 9999999999999996 673
No 18
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.84 E-value=2.8e-21 Score=153.26 Aligned_cols=95 Identities=15% Similarity=0.284 Sum_probs=85.7
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCc-chhhhccCCcEEE
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD-HVPIACKDAVAIL 175 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~-~~~~~~~~a~~il 175 (193)
..+||+++|++|||||||+ +|++..+. .+.++++.++..+.+.+++..+.+.+||++|++.+.. +++.|+++++++|
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~i 101 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFL 101 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEEE
Confidence 4799999999999999999 99876665 5667788888888999999999999999999998875 8888999999999
Q ss_pred EEEECCChhhHHHHHhcC
Q 029430 176 FMFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 176 lvyDit~~~Sf~~l~~W~ 193 (193)
+|||+++++||+++.+|+
T Consensus 102 lv~d~~~~~s~~~~~~~~ 119 (195)
T 3cbq_A 102 IVFSVTDRRSFSKVPETL 119 (195)
T ss_dssp EEEETTCHHHHHTHHHHH
T ss_pred EEEECCCHHHHHHHHHHH
Confidence 999999999999999884
No 19
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.84 E-value=1.6e-20 Score=145.27 Aligned_cols=95 Identities=18% Similarity=0.209 Sum_probs=88.3
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEE
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~il 175 (193)
...+||+++|++|||||||+ +|+++.+. .+.+|++..+ .+.+.+++..+.+++||++|+++|..++..+++++|++|
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 82 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI 82 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence 35799999999999999999 99999988 7778888777 788899999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHhcC
Q 029430 176 FMFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 176 lvyDit~~~Sf~~l~~W~ 193 (193)
+|||++++++|+.+..|+
T Consensus 83 ~v~d~~~~~s~~~~~~~~ 100 (181)
T 3t5g_A 83 LVYSVTSIKSFEVIKVIH 100 (181)
T ss_dssp EEEETTCHHHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHH
Confidence 999999999999998883
No 20
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.84 E-value=1.6e-20 Score=148.71 Aligned_cols=96 Identities=19% Similarity=0.397 Sum_probs=90.9
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEE
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~il 175 (193)
...+||+|+|++|||||||+ +|.++.+. .+.++++.++..+.+.+++..+.+.+||++|+++|..++..+++++|++|
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi 85 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGII 85 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEE
Confidence 35799999999999999999 99999998 78899999999899999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHhcC
Q 029430 176 FMFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 176 lvyDit~~~Sf~~l~~W~ 193 (193)
+|||++++++|+.+..|+
T Consensus 86 lv~d~~~~~s~~~~~~~~ 103 (206)
T 2bcg_Y 86 IVYDVTDQESFNGVKMWL 103 (206)
T ss_dssp EEEETTCHHHHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHH
Confidence 999999999999999884
No 21
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.84 E-value=1.1e-20 Score=152.26 Aligned_cols=96 Identities=27% Similarity=0.506 Sum_probs=84.7
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEE
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~il 175 (193)
...+||+|+|++|||||||+ +|+++.|. .+.+|+|.++..+.+.+++..+.++|||++|+++|..++..+++.++++|
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 90 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEE
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEE
Confidence 45799999999999999999 99999998 78889999999899999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHhcC
Q 029430 176 FMFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 176 lvyDit~~~Sf~~l~~W~ 193 (193)
+|||++++.+|+++.+|+
T Consensus 91 lV~D~~~~~s~~~~~~~l 108 (223)
T 3cpj_B 91 IVYDISKSSSYENCNHWL 108 (223)
T ss_dssp EEEC-CCHHHHHHHHHHH
T ss_pred EEEeCCCHHHHHHHHHHH
Confidence 999999999999999884
No 22
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.84 E-value=1.1e-20 Score=145.61 Aligned_cols=97 Identities=25% Similarity=0.491 Sum_probs=82.5
Q ss_pred CceeeEEEEECCCCCChhhHH-hhhcCccc--cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcE
Q 029430 97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVA 173 (193)
Q Consensus 97 ~~~~~KivllGd~gvGKTSLl-r~~~~~f~--~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~ 173 (193)
....+||+++|++|||||||+ +++++.+. .+.+|++.++....+.+++..+.+++||++|++++..++..+++++|+
T Consensus 7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 86 (180)
T 2g6b_A 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA 86 (180)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCE
Confidence 346899999999999999999 99999985 677899999988888999999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHhcC
Q 029430 174 ILFMFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 174 illvyDit~~~Sf~~l~~W~ 193 (193)
+|+|||++++++|+++.+|+
T Consensus 87 ii~v~d~~~~~s~~~~~~~~ 106 (180)
T 2g6b_A 87 LLLLYDVTNKASFDNIQAWL 106 (180)
T ss_dssp EEEEEETTCHHHHHTHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHH
Confidence 99999999999999998884
No 23
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.84 E-value=4.6e-21 Score=149.94 Aligned_cols=95 Identities=22% Similarity=0.486 Sum_probs=89.4
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCC-cchhhhccCCcEEE
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF-DHVPIACKDAVAIL 175 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~-~~~~~~~~~a~~il 175 (193)
..+||+++|++|||||||+ +|+++.+. .+.++++.++..+.+.+++..+.+.|||++|++++. .++..+++++|++|
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~ii 98 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVV 98 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEEE
Confidence 4799999999999999999 99999998 788899999999999999999999999999999998 88999999999999
Q ss_pred EEEECCChhhHHHHHhcC
Q 029430 176 FMFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 176 lvyDit~~~Sf~~l~~W~ 193 (193)
+|||+++++||+++.+|+
T Consensus 99 lv~D~~~~~s~~~~~~~~ 116 (189)
T 1z06_A 99 FVYDMTNMASFHSLPAWI 116 (189)
T ss_dssp EEEETTCHHHHHTHHHHH
T ss_pred EEEECcCHHHHHHHHHHH
Confidence 999999999999998884
No 24
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.84 E-value=6.2e-21 Score=149.80 Aligned_cols=89 Identities=21% Similarity=0.329 Sum_probs=79.6
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEE
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~il 175 (193)
...+||+++|++|||||||+ +|+++.|. .+.+| +.++ .+.+.+++..+.++||||+|+++|. ++++++++|
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t-~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i 90 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGRF-KKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVV 90 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTT-CEEE-EEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCC-cceE-EEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEE
Confidence 45899999999999999999 99999998 56666 4444 4889999999999999999999876 888999999
Q ss_pred EEEECCChhhHHHHHhcC
Q 029430 176 FMFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 176 lvyDit~~~Sf~~l~~W~ 193 (193)
+|||+++++||+++.+|+
T Consensus 91 ~v~d~~~~~s~~~~~~~~ 108 (184)
T 3ihw_A 91 FVFSLEDEISFQTVYNYF 108 (184)
T ss_dssp EEEETTCHHHHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHH
Confidence 999999999999999884
No 25
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.84 E-value=7.6e-21 Score=152.21 Aligned_cols=95 Identities=25% Similarity=0.394 Sum_probs=86.8
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEE
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~il 175 (193)
...+||+++|++|||||||+ +|+++.|. .+.+|++.++ .+.+.+++..+.++|||++|+++|..++..++++++++|
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 104 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 104 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEE
Confidence 34799999999999999999 99999998 7788988776 567788999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHH-HhcC
Q 029430 176 FMFDLTSRCTLNRF-DHNQ 193 (193)
Q Consensus 176 lvyDit~~~Sf~~l-~~W~ 193 (193)
+|||+++++||+++ ..|+
T Consensus 105 lv~D~~~~~s~~~~~~~~~ 123 (205)
T 1gwn_A 105 ICFDISRPETLDSVLKKWK 123 (205)
T ss_dssp EEEETTCHHHHHHHHHTHH
T ss_pred EEEECCCHHHHHHHHHHHH
Confidence 99999999999998 7773
No 26
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.84 E-value=9.9e-21 Score=147.58 Aligned_cols=97 Identities=26% Similarity=0.517 Sum_probs=91.2
Q ss_pred CceeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEE
Q 029430 97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 174 (193)
Q Consensus 97 ~~~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~i 174 (193)
....+||+++|++|||||||+ +++++.|. .+.++++.++..+.+.+++..+.+.|||++|++.+..++..+++.+|++
T Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 91 (195)
T 1x3s_A 12 VLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGV 91 (195)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence 346799999999999999999 99999998 7888999999889999999999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHhcC
Q 029430 175 LFMFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 175 llvyDit~~~Sf~~l~~W~ 193 (193)
|+|||++++.+|+++..|+
T Consensus 92 i~v~d~~~~~s~~~~~~~~ 110 (195)
T 1x3s_A 92 ILVYDVTRRDTFVKLDNWL 110 (195)
T ss_dssp EEEEETTCHHHHHTHHHHH
T ss_pred EEEEECcCHHHHHHHHHHH
Confidence 9999999999999998884
No 27
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.84 E-value=9.6e-21 Score=143.87 Aligned_cols=95 Identities=18% Similarity=0.395 Sum_probs=89.9
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEE
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 176 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~ill 176 (193)
..+||+++|++|||||||+ +++++.+. .+.+|++.++..+.+.+++..+.+.+||++|++++..++..+++.+|++|+
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 83 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVL 83 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEE
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEE
Confidence 4799999999999999999 99999988 788899999999999999999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHhcC
Q 029430 177 MFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 177 vyDit~~~Sf~~l~~W~ 193 (193)
|||++++++|+++..|+
T Consensus 84 v~d~~~~~s~~~~~~~~ 100 (168)
T 1z2a_A 84 VFSTTDRESFEAISSWR 100 (168)
T ss_dssp EEETTCHHHHHTHHHHH
T ss_pred EEECcCHHHHHHHHHHH
Confidence 99999999999998884
No 28
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.84 E-value=1.1e-20 Score=145.81 Aligned_cols=89 Identities=19% Similarity=0.344 Sum_probs=81.0
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcCccccccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEE
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 176 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~~f~~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~ill 176 (193)
...+||+++|++|||||||+ +|++++|..+.+|++..+ .+.+.+++..+.+++||++|+++ ..|++++|++|+
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~il 78 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIF 78 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeE-EEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEE
Confidence 35799999999999999999 999999988778888554 68889999999999999999987 568899999999
Q ss_pred EEECCChhhHHHHHhc
Q 029430 177 MFDLTSRCTLNRFDHN 192 (193)
Q Consensus 177 vyDit~~~Sf~~l~~W 192 (193)
|||+++++||+++..|
T Consensus 79 v~D~~~~~s~~~~~~~ 94 (178)
T 2iwr_A 79 VFSLEDENSFQAVSRL 94 (178)
T ss_dssp EEETTCHHHHHHHHHH
T ss_pred EEECcCHHHHHHHHHH
Confidence 9999999999999986
No 29
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.84 E-value=1.8e-20 Score=146.81 Aligned_cols=96 Identities=27% Similarity=0.429 Sum_probs=90.4
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEE
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~il 175 (193)
...+||+++|++|||||||+ +++++.+. .+.+|+|.++..+.+.+++..+.+.+||++|+++|..++..++++++++|
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 102 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGAL 102 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 45799999999999999999 99999998 77789999998899999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHhcC
Q 029430 176 FMFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 176 lvyDit~~~Sf~~l~~W~ 193 (193)
+|||++++.+|+.+.+|+
T Consensus 103 ~v~D~~~~~s~~~~~~~l 120 (193)
T 2oil_A 103 LVFDLTKHQTYAVVERWL 120 (193)
T ss_dssp EEEETTCHHHHHTHHHHH
T ss_pred EEEECCCHHHHHHHHHHH
Confidence 999999999999998884
No 30
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.84 E-value=1.2e-20 Score=144.96 Aligned_cols=97 Identities=25% Similarity=0.458 Sum_probs=87.6
Q ss_pred CceeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEE
Q 029430 97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 174 (193)
Q Consensus 97 ~~~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~i 174 (193)
....+||+++|++|||||||+ +++++.+. .+.+++|.++..+.+.+++..+.+.+||++|++++..++..+++.++++
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 83 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC 83 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence 345899999999999999999 99999988 7888999999889999999999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHhcC
Q 029430 175 LFMFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 175 llvyDit~~~Sf~~l~~W~ 193 (193)
|+|||++++++|+++.+|+
T Consensus 84 i~v~d~~~~~s~~~~~~~~ 102 (177)
T 1wms_A 84 LLTFSVDDSQSFQNLSNWK 102 (177)
T ss_dssp EEEEETTCHHHHHTHHHHH
T ss_pred EEEEECcCHHHHHHHHHHH
Confidence 9999999999999998884
No 31
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.84 E-value=1e-20 Score=145.17 Aligned_cols=97 Identities=20% Similarity=0.474 Sum_probs=90.6
Q ss_pred CceeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEE
Q 029430 97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 174 (193)
Q Consensus 97 ~~~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~i 174 (193)
+...+||+++|+.|||||||+ +++++.+. .+.++++.++..+.+.+++..+.+.+||++|++++..++..+++++|++
T Consensus 11 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 90 (179)
T 2y8e_A 11 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVA 90 (179)
T ss_dssp -CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence 456799999999999999999 99999988 7788999999999999999999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHhcC
Q 029430 175 LFMFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 175 llvyDit~~~Sf~~l~~W~ 193 (193)
|+|||++++++|+++.+|+
T Consensus 91 i~v~d~~~~~s~~~~~~~~ 109 (179)
T 2y8e_A 91 VVVYDITNTNSFHQTSKWI 109 (179)
T ss_dssp EEEEETTCHHHHHTHHHHH
T ss_pred EEEEECCCHHHHHHHHHHH
Confidence 9999999999999998884
No 32
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.83 E-value=1.7e-20 Score=146.53 Aligned_cols=96 Identities=21% Similarity=0.429 Sum_probs=91.0
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEE
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~il 175 (193)
...+||+++|++|||||||+ +|+++.+. .+.++++.++....+.+++..+.+.+||++|++.+..++..+++.+|++|
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 93 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 93 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEE
Confidence 45799999999999999999 99999988 78889999999999999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHhcC
Q 029430 176 FMFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 176 lvyDit~~~Sf~~l~~W~ 193 (193)
+|||++++++|+++.+|+
T Consensus 94 ~v~d~~~~~s~~~~~~~~ 111 (196)
T 3tkl_A 94 VVYDVTDQESFNNVKQWL 111 (196)
T ss_dssp EEEETTCHHHHHTHHHHH
T ss_pred EEEECcCHHHHHHHHHHH
Confidence 999999999999999884
No 33
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.83 E-value=5.8e-21 Score=150.95 Aligned_cols=96 Identities=21% Similarity=0.429 Sum_probs=87.9
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEE
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~il 175 (193)
...+||+++|++|||||||+ +|+++.+. .+.++++.++..+.+.+++..+.+.|||++|++++..++..+++++|++|
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 110 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 110 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence 45899999999999999999 99999988 77889999999999999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHhcC
Q 029430 176 FMFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 176 lvyDit~~~Sf~~l~~W~ 193 (193)
+|||++++++|+++.+|+
T Consensus 111 ~v~d~~~~~s~~~~~~~~ 128 (199)
T 3l0i_B 111 VVYDVTDQESFNNVKQWL 128 (199)
T ss_dssp ECC-CCCSHHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHH
Confidence 999999999999999884
No 34
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.83 E-value=6.1e-21 Score=150.22 Aligned_cols=96 Identities=22% Similarity=0.434 Sum_probs=84.2
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEE
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~il 175 (193)
...+||+++|++|||||||+ +++++.+. .+.+++|.++..+.+.+++..+.+++||++|++++..++..+++++|++|
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 103 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGII 103 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 35799999999999999999 99999988 77889999999999999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHhcC
Q 029430 176 FMFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 176 lvyDit~~~Sf~~l~~W~ 193 (193)
+|||++++++|+++.+|+
T Consensus 104 lV~D~~~~~s~~~~~~~~ 121 (192)
T 2il1_A 104 LVYDITKKETFDDLPKWM 121 (192)
T ss_dssp EEEETTCHHHHHTHHHHH
T ss_pred EEEECcCHHHHHHHHHHH
Confidence 999999999999998883
No 35
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.83 E-value=2.2e-20 Score=146.65 Aligned_cols=95 Identities=19% Similarity=0.363 Sum_probs=86.9
Q ss_pred CceeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEE
Q 029430 97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 174 (193)
Q Consensus 97 ~~~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~i 174 (193)
....+||+++|++|||||||+ +|+++.+. .+.+|++.++. ..+.+++..+.+++||++|+++|..++..+++++|++
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 98 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVV 98 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEE
Confidence 446899999999999999999 99999998 77889887775 5778899999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHH-Hhc
Q 029430 175 LFMFDLTSRCTLNRF-DHN 192 (193)
Q Consensus 175 llvyDit~~~Sf~~l-~~W 192 (193)
|+|||++++++|+++ ..|
T Consensus 99 i~v~d~~~~~s~~~~~~~~ 117 (194)
T 3reg_A 99 LLCFAVNNRTSFDNISTKW 117 (194)
T ss_dssp EEEEETTCHHHHHHHHHTH
T ss_pred EEEEECCCHHHHHHHHHHH
Confidence 999999999999997 666
No 36
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.83 E-value=2e-20 Score=148.83 Aligned_cols=94 Identities=20% Similarity=0.341 Sum_probs=84.4
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEE
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 176 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~ill 176 (193)
..+||+++|++|||||||+ +|+++.|. .+.+|++.++ ...+.+++..+.++|||++|+++|..++..+++++|++|+
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~il 86 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL 86 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEE
Confidence 4799999999999999999 99999998 7778888665 5677889999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHH-hcC
Q 029430 177 MFDLTSRCTLNRFD-HNQ 193 (193)
Q Consensus 177 vyDit~~~Sf~~l~-~W~ 193 (193)
|||++++++|+++. .|+
T Consensus 87 v~d~~~~~s~~~~~~~~~ 104 (212)
T 2j0v_A 87 AFSLISKASYENVLKKWM 104 (212)
T ss_dssp EEETTCHHHHHHHHHTHH
T ss_pred EEECCCHHHHHHHHHHHH
Confidence 99999999999986 773
No 37
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.83 E-value=8.9e-21 Score=153.64 Aligned_cols=95 Identities=17% Similarity=0.291 Sum_probs=82.5
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcCc--cccccccceeeeEEEEEEECCeEEEEEEEeCCCCCC-CCcchhhhccCCcE
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGNE--QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR-SFDHVPIACKDAVA 173 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~~--f~~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~-~~~~~~~~~~~a~~ 173 (193)
...+||+|+|++|||||||+ +|++.. |....+++|.+++.+.+.+++..+.+.+|||+|++. +..+.+.|++.+++
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~ 114 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 114 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCE
Confidence 34799999999999999999 999654 345567789999889999999999999999999987 56677888999999
Q ss_pred EEEEEECCChhhHHHHHhc
Q 029430 174 ILFMFDLTSRCTLNRFDHN 192 (193)
Q Consensus 174 illvyDit~~~Sf~~l~~W 192 (193)
+|+|||+++++||+++.+|
T Consensus 115 ~ilVydvt~~~sf~~~~~~ 133 (211)
T 2g3y_A 115 YLIVYSITDRASFEKASEL 133 (211)
T ss_dssp EEEEEETTCHHHHHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHH
Confidence 9999999999999999888
No 38
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.83 E-value=1.4e-20 Score=145.94 Aligned_cols=96 Identities=23% Similarity=0.399 Sum_probs=90.4
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEE
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~il 175 (193)
...+||+++|++|||||||+ +|+++.+. .+.++++.++..+.+.+++..+.+++||++|++++..++..+++++|++|
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 87 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL 87 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEE
Confidence 35799999999999999999 99999998 78889999999899999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHhcC
Q 029430 176 FMFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 176 lvyDit~~~Sf~~l~~W~ 193 (193)
+|||++++++|+++..|+
T Consensus 88 ~v~d~~~~~s~~~~~~~~ 105 (186)
T 2bme_A 88 LVYDITSRETYNALTNWL 105 (186)
T ss_dssp EEEETTCHHHHHTHHHHH
T ss_pred EEEECcCHHHHHHHHHHH
Confidence 999999999999998884
No 39
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.83 E-value=2e-20 Score=145.90 Aligned_cols=94 Identities=26% Similarity=0.393 Sum_probs=86.1
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEE
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~il 175 (193)
...+||+++|++|||||||+ +|+++.|. .+.+|++.++ .+.+.+++..+.+.+||++|++.|..++..++++++++|
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 83 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 83 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEE
Confidence 34799999999999999999 99999998 7788888776 467788999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHH-Hhc
Q 029430 176 FMFDLTSRCTLNRF-DHN 192 (193)
Q Consensus 176 lvyDit~~~Sf~~l-~~W 192 (193)
+|||+++++||+++ ..|
T Consensus 84 ~v~d~~~~~s~~~~~~~~ 101 (184)
T 1m7b_A 84 ICFDISRPETLDSVLKKW 101 (184)
T ss_dssp EEEETTCHHHHHHHHHTH
T ss_pred EEEECCCHHHHHHHHHHH
Confidence 99999999999998 677
No 40
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.83 E-value=1.7e-20 Score=143.70 Aligned_cols=95 Identities=18% Similarity=0.304 Sum_probs=78.9
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccccccccceeeeEEEEEEECCeEEEEEEEeCCCCCC--CCcchhhhccCCcEEE
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR--SFDHVPIACKDAVAIL 175 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~--~~~~~~~~~~~a~~il 175 (193)
..+||+++|++|||||||+ +|+++.+....++.|.++..+.+.+++..+.+.+||++|++. +..+...+++.++++|
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i 82 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYV 82 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEEE
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEEE
Confidence 3689999999999999999 999999886677888898889999999999999999999998 6777888999999999
Q ss_pred EEEECCChhhHHHHHhcC
Q 029430 176 FMFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 176 lvyDit~~~Sf~~l~~W~ 193 (193)
+|||+++++||+++.+|+
T Consensus 83 ~v~d~~~~~s~~~~~~~~ 100 (175)
T 2nzj_A 83 IVYSIADRGSFESASELR 100 (175)
T ss_dssp EEEETTCHHHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHH
Confidence 999999999999998883
No 41
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.83 E-value=2.3e-20 Score=146.28 Aligned_cols=95 Identities=16% Similarity=0.269 Sum_probs=86.9
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEE
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~il 175 (193)
...+||+++|++|||||||+ +|+++.|. .+.+|++.++ .+.+.+++..+.+++||++|+++|..++..+++++|++|
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 94 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFL 94 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEE
Confidence 45799999999999999999 99999988 7778887765 567888999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-hcC
Q 029430 176 FMFDLTSRCTLNRFD-HNQ 193 (193)
Q Consensus 176 lvyDit~~~Sf~~l~-~W~ 193 (193)
+|||+++++||+++. .|+
T Consensus 95 ~v~d~~~~~s~~~~~~~~~ 113 (194)
T 2atx_A 95 ICFSVVNPASFQNVKEEWV 113 (194)
T ss_dssp EEEETTCHHHHHHHHHTHH
T ss_pred EEEECCCHHHHHHHHHHHH
Confidence 999999999999997 773
No 42
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.83 E-value=2.8e-20 Score=141.56 Aligned_cols=96 Identities=27% Similarity=0.466 Sum_probs=90.3
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEE
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~il 175 (193)
...+||+++|++|||||||+ +++++.+. .+.++.|.++..+.+.+++..+.+.+||++|++++..++..+++++|++|
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i 83 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 83 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence 35799999999999999999 99999988 78889999998889999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHhcC
Q 029430 176 FMFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 176 lvyDit~~~Sf~~l~~W~ 193 (193)
+|||++++.+|+++.+|+
T Consensus 84 ~v~d~~~~~s~~~~~~~~ 101 (170)
T 1z0j_A 84 IVYDITKEETFSTLKNWV 101 (170)
T ss_dssp EEEETTCHHHHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHH
Confidence 999999999999998884
No 43
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.83 E-value=2.8e-20 Score=142.94 Aligned_cols=95 Identities=15% Similarity=0.180 Sum_probs=87.8
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEE
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~il 175 (193)
...+||+++|++|||||||+ +++++.+. .+.+|++.++. +.+.+++..+.+.+||++|+++|..++..+++.++++|
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 85 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFL 85 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEE
Confidence 34799999999999999999 99999988 77788888775 77889999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHhcC
Q 029430 176 FMFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 176 lvyDit~~~Sf~~l~~W~ 193 (193)
+|||++++++|+++.+|+
T Consensus 86 ~v~d~~~~~s~~~~~~~~ 103 (181)
T 2fn4_A 86 LVFAINDRQSFNEVGKLF 103 (181)
T ss_dssp EEEETTCHHHHHHHHHHH
T ss_pred EEEeCCCHHHHHHHHHHH
Confidence 999999999999998884
No 44
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.83 E-value=9e-21 Score=149.83 Aligned_cols=96 Identities=27% Similarity=0.447 Sum_probs=81.5
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEE
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~il 175 (193)
...+||+++|++|||||||+ +++++.|. .+.+++|.++..+.+.+++..+.++|||++|+++|..++..+++++|++|
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 105 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVL 105 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEE
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEEE
Confidence 34799999999999999999 99999988 78889999998899999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHhcC
Q 029430 176 FMFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 176 lvyDit~~~Sf~~l~~W~ 193 (193)
+|||++++++|+++.+|+
T Consensus 106 lv~d~~~~~s~~~~~~~~ 123 (199)
T 2p5s_A 106 LLYDVTCEKSFLNIREWV 123 (199)
T ss_dssp EEEETTCHHHHHTHHHHH
T ss_pred EEEECCChHHHHHHHHHH
Confidence 999999999999998884
No 45
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.83 E-value=1.3e-20 Score=151.26 Aligned_cols=98 Identities=27% Similarity=0.395 Sum_probs=91.7
Q ss_pred CCceeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcE
Q 029430 96 SDLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVA 173 (193)
Q Consensus 96 ~~~~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~ 173 (193)
.....+||+++|++|||||||+ +|+.+.+. .+.++.|.++....+.+++..+.++||||+|++.|..++..+++++++
T Consensus 11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 90 (221)
T 3gj0_A 11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQC 90 (221)
T ss_dssp CCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCE
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCE
Confidence 3455899999999999999999 99999988 778899999999999999999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHhcC
Q 029430 174 ILFMFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 174 illvyDit~~~Sf~~l~~W~ 193 (193)
+|+|||++++++|+++..|+
T Consensus 91 ~i~v~d~~~~~s~~~~~~~~ 110 (221)
T 3gj0_A 91 AIIMFDVTSRVTYKNVPNWH 110 (221)
T ss_dssp EEEEEETTCHHHHHTHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHH
Confidence 99999999999999999884
No 46
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.83 E-value=1.1e-20 Score=143.87 Aligned_cols=94 Identities=23% Similarity=0.499 Sum_probs=82.9
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEE
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illv 177 (193)
.+||+++|++|||||||+ +++++++. .+.++++.++..+.+.+++..+.+.+||++|++++..++..+++++|++|+|
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV 82 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEEE
Confidence 689999999999999999 99999997 7888999999888999999999999999999999999999999999999999
Q ss_pred EECCChhhHHHHHhcC
Q 029430 178 FDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 178 yDit~~~Sf~~l~~W~ 193 (193)
||++++++|+++..|+
T Consensus 83 ~d~~~~~s~~~~~~~~ 98 (170)
T 1g16_A 83 YDITDERTFTNIKQWF 98 (170)
T ss_dssp EETTCHHHHHTHHHHH
T ss_pred EECCCHHHHHHHHHHH
Confidence 9999999999998884
No 47
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.83 E-value=2.6e-20 Score=146.97 Aligned_cols=95 Identities=25% Similarity=0.479 Sum_probs=89.9
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEE
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 176 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~ill 176 (193)
..+||+++|++|||||||+ +|+++.|. .+.+++|.++..+.+.+++..+.+++||++|++++..++..+++++|++|+
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 86 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFIL 86 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEE
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEEE
Confidence 4799999999999999999 99999998 788899999988999999999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHhcC
Q 029430 177 MFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 177 vyDit~~~Sf~~l~~W~ 193 (193)
|||++++++|+++.+|+
T Consensus 87 v~d~~~~~s~~~~~~~~ 103 (203)
T 1zbd_A 87 MYDITNEESFNAVQDWS 103 (203)
T ss_dssp EEETTCHHHHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHH
Confidence 99999999999999884
No 48
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.83 E-value=9.5e-21 Score=150.22 Aligned_cols=96 Identities=23% Similarity=0.399 Sum_probs=80.8
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEE
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~il 175 (193)
...+||+++|++|||||||+ +|+++.+. .+.++++.++..+.+.+++..+.++|||++|+++|..++..+++.+|++|
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 102 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL 102 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEE
Confidence 35899999999999999999 99999998 78889999999899999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHhcC
Q 029430 176 FMFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 176 lvyDit~~~Sf~~l~~W~ 193 (193)
+|||++++++|+++..|+
T Consensus 103 ~v~d~~~~~s~~~~~~~~ 120 (200)
T 2o52_A 103 LVYDITSRETYNSLAAWL 120 (200)
T ss_dssp EEEETTCHHHHHTHHHHH
T ss_pred EEEECcCHHHHHHHHHHH
Confidence 999999999999999884
No 49
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.83 E-value=2.3e-20 Score=147.65 Aligned_cols=95 Identities=15% Similarity=0.133 Sum_probs=83.9
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEE
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~il 175 (193)
...+||+++|++|||||||+ +|+++.+. .+.+|++..+ ...+.+++..+.+.|||++|++++..++..+++++|++|
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 100 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYV 100 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEE
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEE
Confidence 34899999999999999999 99999998 7778888777 677788888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHhcC
Q 029430 176 FMFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 176 lvyDit~~~Sf~~l~~W~ 193 (193)
+|||++++++|+.+..|+
T Consensus 101 ~v~d~~~~~s~~~~~~~~ 118 (201)
T 3oes_A 101 LVYSVTSLHSFQVIESLY 118 (201)
T ss_dssp EEEETTCHHHHHHHHHHH
T ss_pred EEEeCCCHHHHHHHHHHH
Confidence 999999999999999884
No 50
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.82 E-value=4.1e-20 Score=146.19 Aligned_cols=94 Identities=17% Similarity=0.309 Sum_probs=79.6
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCc--cccccccceeeeEEEEEEECCeEEEEEEEeCCCCCC-CCcchhhhccCCcEE
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNE--QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR-SFDHVPIACKDAVAI 174 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~--f~~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~-~~~~~~~~~~~a~~i 174 (193)
..+||+++|++|||||||+ +|++.. |....+++|.++..+.+.+++..+.+.+||++|++. +..+.+.|++.++++
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~ 84 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAY 84 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCEE
Confidence 3699999999999999999 999643 455556788898889999999999999999999887 667888899999999
Q ss_pred EEEEECCChhhHHHHHhc
Q 029430 175 LFMFDLTSRCTLNRFDHN 192 (193)
Q Consensus 175 llvyDit~~~Sf~~l~~W 192 (193)
|+|||++|++||+++.+|
T Consensus 85 i~v~dv~~~~s~~~~~~~ 102 (192)
T 2cjw_A 85 LIVYSITDRASFEKASEL 102 (192)
T ss_dssp EEEEETTCHHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHH
Confidence 999999999999999888
No 51
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.82 E-value=3e-20 Score=146.03 Aligned_cols=96 Identities=25% Similarity=0.474 Sum_probs=90.6
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEE
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~il 175 (193)
...+||+++|++|||||||+ +++++.|. .+.++.|.++..+.+.+++..+.+.+||++|++++..++..+++.++++|
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 100 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAV 100 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEE
Confidence 45899999999999999999 99999988 78889999998888999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHhcC
Q 029430 176 FMFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 176 lvyDit~~~Sf~~l~~W~ 193 (193)
+|||++++++|+++..|+
T Consensus 101 lV~d~~~~~s~~~~~~~~ 118 (192)
T 2fg5_A 101 IVYDITKQDSFYTLKKWV 118 (192)
T ss_dssp EEEETTCTHHHHHHHHHH
T ss_pred EEEeCCCHHHHHHHHHHH
Confidence 999999999999999884
No 52
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.82 E-value=9.5e-22 Score=154.34 Aligned_cols=96 Identities=23% Similarity=0.463 Sum_probs=90.3
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEE
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~il 175 (193)
...+||+++|++|||||||+ +|+++.|. .+.++.|.++..+.+.+++..+.++|||++|++.|..++..+++++|++|
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 100 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 100 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEE
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEE
Confidence 35799999999999999999 99999988 77889999999899999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHhcC
Q 029430 176 FMFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 176 lvyDit~~~Sf~~l~~W~ 193 (193)
+|||++++++|+++.+|+
T Consensus 101 ~v~d~~~~~s~~~~~~~~ 118 (191)
T 3dz8_A 101 LMYDITNEESFNAVQDWA 118 (191)
T ss_dssp EEEETTCHHHHHTHHHHH
T ss_pred EEEECcCHHHHHHHHHHH
Confidence 999999999999999884
No 53
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.82 E-value=9.8e-21 Score=147.44 Aligned_cols=97 Identities=16% Similarity=0.244 Sum_probs=84.8
Q ss_pred CceeeEEEEECCCCCChhhHHhhhcCccc-c-----------ccccceeeeEEEEE-EECCeEEEEEEEeCCCCCCCCcc
Q 029430 97 DLVSLKISLLGDCQIGKTSFVKYVGNEQE-R-----------SLQMAGLNLINKTL-MVQGARIAFSIWDVGGDSRSFDH 163 (193)
Q Consensus 97 ~~~~~KivllGd~gvGKTSLlr~~~~~f~-~-----------~~~t~g~~~~~~~i-~v~~~~v~l~iwD~~G~e~~~~~ 163 (193)
....+||+++|++|||||||++++.+.|. . +.+|+|.++..+.+ .+++..+.++||||+|+++|..+
T Consensus 11 ~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 90 (198)
T 3t1o_A 11 REINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNAS 90 (198)
T ss_dssp TEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHH
T ss_pred cccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHH
Confidence 45689999999999999999966666666 4 34688888877777 77888999999999999999999
Q ss_pred hhhhccCCcEEEEEEECC------ChhhHHHHHhcC
Q 029430 164 VPIACKDAVAILFMFDLT------SRCTLNRFDHNQ 193 (193)
Q Consensus 164 ~~~~~~~a~~illvyDit------~~~Sf~~l~~W~ 193 (193)
++.+++++|++|+|||++ +.++|+++.+|+
T Consensus 91 ~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l 126 (198)
T 3t1o_A 91 RKLILRGVDGIVFVADSAPNRLRANAESMRNMRENL 126 (198)
T ss_dssp HHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHH
Confidence 999999999999999999 778999998884
No 54
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.82 E-value=3.5e-20 Score=147.52 Aligned_cols=95 Identities=20% Similarity=0.325 Sum_probs=83.0
Q ss_pred CceeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEE
Q 029430 97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 174 (193)
Q Consensus 97 ~~~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~i 174 (193)
....+||+++|++|||||||+ +|+++.+. .+.+|++. .....+.+++..+.+++||++|+++|..++..+++++|++
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 105 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF 105 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEE-EEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecc-eeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence 345799999999999999999 99999998 67777764 4567888899999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHH-hc
Q 029430 175 LFMFDLTSRCTLNRFD-HN 192 (193)
Q Consensus 175 llvyDit~~~Sf~~l~-~W 192 (193)
|+|||++++++|+++. .|
T Consensus 106 i~v~d~~~~~s~~~~~~~~ 124 (204)
T 4gzl_A 106 LICFSLVSPASFENVRAKW 124 (204)
T ss_dssp EEEEETTCHHHHHHHHHTH
T ss_pred EEEEECCCHHHHHHHHHHH
Confidence 9999999999999996 66
No 55
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.82 E-value=2.9e-20 Score=141.03 Aligned_cols=94 Identities=16% Similarity=0.251 Sum_probs=86.0
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEE
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 176 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~ill 176 (193)
..+||+++|++|||||||+ +++++.+. .+.+|++..+ .+.+.+++..+.+++||++|++++..++..++++++++++
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 80 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL 80 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 3689999999999999999 99999988 7778888666 4677889999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHhcC
Q 029430 177 MFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 177 vyDit~~~Sf~~l~~W~ 193 (193)
|||+++++||+++.+|+
T Consensus 81 v~d~~~~~s~~~~~~~~ 97 (167)
T 1c1y_A 81 VYSITAQSTFNDLQDLR 97 (167)
T ss_dssp EEETTCHHHHHTHHHHH
T ss_pred EEECCCHHHHHHHHHHH
Confidence 99999999999998873
No 56
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.82 E-value=3.4e-20 Score=146.27 Aligned_cols=96 Identities=28% Similarity=0.470 Sum_probs=89.8
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEE
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~il 175 (193)
...+||+++|++|||||||+ +++++.+. .+.+++|.++....+.+++..+.+.+||++|++.+..++..+++++|++|
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCV 85 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEE
Confidence 34799999999999999999 99999988 78889999999999999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHhcC
Q 029430 176 FMFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 176 lvyDit~~~Sf~~l~~W~ 193 (193)
+|||++++++|+++..|+
T Consensus 86 ~v~d~~~~~s~~~~~~~~ 103 (207)
T 1vg8_A 86 LVFDVTAPNTFKTLDSWR 103 (207)
T ss_dssp EEEETTCHHHHHTHHHHH
T ss_pred EEEECCCHHHHHHHHHHH
Confidence 999999999999998884
No 57
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.82 E-value=1.9e-20 Score=143.91 Aligned_cols=96 Identities=22% Similarity=0.413 Sum_probs=76.2
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEEC-CeEEEEEEEeCCCCCCCCcchhhhccCCcEE
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQ-GARIAFSIWDVGGDSRSFDHVPIACKDAVAI 174 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~-~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~i 174 (193)
...+||+++|++|||||||+ +++++.+. .+.+++|.++....+.++ +..+.+.+||++|++.+..++..+++++|++
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 85 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCC 85 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCEE
Confidence 34799999999999999999 99999988 788899999988888887 6679999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHhcC
Q 029430 175 LFMFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 175 llvyDit~~~Sf~~l~~W~ 193 (193)
|+|||++++++|+++.+|+
T Consensus 86 i~v~d~~~~~s~~~~~~~~ 104 (182)
T 1ky3_A 86 VLVYDVTNASSFENIKSWR 104 (182)
T ss_dssp EEEEETTCHHHHHTHHHHH
T ss_pred EEEEECCChHHHHHHHHHH
Confidence 9999999999999998884
No 58
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.82 E-value=5.2e-20 Score=143.29 Aligned_cols=95 Identities=26% Similarity=0.458 Sum_probs=87.6
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeE------------------------------
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGAR------------------------------ 146 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~------------------------------ 146 (193)
..+||+++|++|||||||+ +++++.+. .+.+|+|.++..+.+.+++..
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNN 85 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------C
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccccc
Confidence 4799999999999999999 99999998 788899999988888888766
Q ss_pred -------EEEEEEeCCCCCCCCcchhhhccCCcEEEEEEECCChhhHHHHHhcC
Q 029430 147 -------IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 147 -------v~l~iwD~~G~e~~~~~~~~~~~~a~~illvyDit~~~Sf~~l~~W~ 193 (193)
+.+.|||++|++.|..++..+++.+|++|+|||++++++|+++.+|+
T Consensus 86 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~ 139 (208)
T 3clv_A 86 YNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWV 139 (208)
T ss_dssp CCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHH
T ss_pred ccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999884
No 59
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.82 E-value=3e-20 Score=141.72 Aligned_cols=94 Identities=15% Similarity=0.305 Sum_probs=72.0
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCc-chhhhccCCcEEEE
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD-HVPIACKDAVAILF 176 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~-~~~~~~~~a~~ill 176 (193)
.+||+++|++|||||||+ +|.++.+. .+.++.+.+...+.+.+++..+.+.+||++|++++.. ++..+++++|++|+
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 489999999999999999 99988887 5666777888889999999999999999999999876 78888999999999
Q ss_pred EEECCChhhHHHHHhcC
Q 029430 177 MFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 177 vyDit~~~Sf~~l~~W~ 193 (193)
|||+++++||+++.+|+
T Consensus 82 v~d~~~~~s~~~~~~~~ 98 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETL 98 (169)
T ss_dssp EEETTCHHHHHTHHHHH
T ss_pred EEECCChHHHHHHHHHH
Confidence 99999999999999884
No 60
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.82 E-value=9.8e-20 Score=140.65 Aligned_cols=93 Identities=22% Similarity=0.379 Sum_probs=85.2
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEE
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 176 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~ill 176 (193)
..+||+++|++|||||||+ +|+++.+. .+.+|++..+ ...+.+++..+.+++||++|+++|..++..+++.+|++|+
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 82 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence 5799999999999999999 99999988 6777887655 5678889999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHH-hc
Q 029430 177 MFDLTSRCTLNRFD-HN 192 (193)
Q Consensus 177 vyDit~~~Sf~~l~-~W 192 (193)
|||++++++|+++. .|
T Consensus 83 v~d~~~~~s~~~~~~~~ 99 (186)
T 1mh1_A 83 CFSLVSPASFENVRAKW 99 (186)
T ss_dssp EEETTCHHHHHHHHHTH
T ss_pred EEECCChhhHHHHHHHH
Confidence 99999999999987 66
No 61
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.82 E-value=4.5e-20 Score=143.11 Aligned_cols=97 Identities=24% Similarity=0.406 Sum_probs=88.6
Q ss_pred CceeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeE-EEEEEECCe---------EEEEEEEeCCCCCCCCcch
Q 029430 97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLI-NKTLMVQGA---------RIAFSIWDVGGDSRSFDHV 164 (193)
Q Consensus 97 ~~~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~-~~~i~v~~~---------~v~l~iwD~~G~e~~~~~~ 164 (193)
....+||+++|++|||||||+ +++++.+. .+.+|++.++. .+.+.+++. .+.+++||++|++++..++
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 87 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLT 87 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHH
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHH
Confidence 345899999999999999999 99999988 77889999987 677777776 7999999999999999999
Q ss_pred hhhccCCcEEEEEEECCChhhHHHHHhcC
Q 029430 165 PIACKDAVAILFMFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 165 ~~~~~~a~~illvyDit~~~Sf~~l~~W~ 193 (193)
..+++++|++|+|||++++.+|+++.+|+
T Consensus 88 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~ 116 (195)
T 3bc1_A 88 TAFFRDAMGFLLLFDLTNEQSFLNVRNWI 116 (195)
T ss_dssp HHTTTTCSEEEEEEETTCHHHHHTHHHHH
T ss_pred HHHHcCCCEEEEEEECCCHHHHHHHHHHH
Confidence 99999999999999999999999998884
No 62
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.81 E-value=5e-20 Score=140.11 Aligned_cols=93 Identities=16% Similarity=0.284 Sum_probs=62.8
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCccccccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEEE
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 178 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f~~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illvy 178 (193)
.+||+++|++|||||||+ ++.+..+....++.|..+ .+.+.+++..+.+.+||++|++++..++..+++.++++++||
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY 80 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEE
Confidence 589999999999999999 999877766667777665 577889999999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHhcC
Q 029430 179 DLTSRCTLNRFDHNQ 193 (193)
Q Consensus 179 Dit~~~Sf~~l~~W~ 193 (193)
|++++++|+++.+|+
T Consensus 81 d~~~~~s~~~~~~~~ 95 (166)
T 3q72_A 81 SVTDKGSFEKASELR 95 (166)
T ss_dssp ETTCHHHHHHHHHHH
T ss_pred ECCCHHHHHHHHHHH
Confidence 999999999999883
No 63
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.81 E-value=2e-20 Score=149.34 Aligned_cols=96 Identities=26% Similarity=0.499 Sum_probs=88.7
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCe----------EEEEEEEeCCCCCCCCcchh
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGA----------RIAFSIWDVGGDSRSFDHVP 165 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~----------~v~l~iwD~~G~e~~~~~~~ 165 (193)
...+||+|+|++|||||||+ +|+++.|. .+.+|++.++..+.+.+++. .+.++|||++|+++|..++.
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~ 102 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT 102 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHH
Confidence 35799999999999999999 99999998 78889999998888888877 79999999999999999999
Q ss_pred hhccCCcEEEEEEECCChhhHHHHHhcC
Q 029430 166 IACKDAVAILFMFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 166 ~~~~~a~~illvyDit~~~Sf~~l~~W~ 193 (193)
.+++.+|++|+|||++++++|+++.+|+
T Consensus 103 ~~~~~~d~iilV~D~~~~~s~~~~~~~l 130 (217)
T 2f7s_A 103 AFFRDAMGFLLMFDLTSQQSFLNVRNWM 130 (217)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHHHHHHH
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHH
Confidence 9999999999999999999999999884
No 64
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.81 E-value=1.2e-19 Score=143.75 Aligned_cols=93 Identities=22% Similarity=0.391 Sum_probs=85.8
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEE
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 176 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~ill 176 (193)
..+||+++|++|||||||+ +|.++.+. .+.+|++.++. ..+.+++..+.+.|||++|+++|..++..+++++|++|+
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 102 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 102 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEE
Confidence 5899999999999999999 99999998 77788888775 457889999999999999999999999999999999999
Q ss_pred EEECCChhhHHHH-Hhc
Q 029430 177 MFDLTSRCTLNRF-DHN 192 (193)
Q Consensus 177 vyDit~~~Sf~~l-~~W 192 (193)
|||++++++|+++ ..|
T Consensus 103 v~d~~~~~s~~~~~~~~ 119 (201)
T 2gco_A 103 CFSIDSPDSLENIPEKW 119 (201)
T ss_dssp EEETTCHHHHHHHHHTH
T ss_pred EEECCCHHHHHHHHHHH
Confidence 9999999999998 566
No 65
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.81 E-value=6.3e-20 Score=141.61 Aligned_cols=96 Identities=15% Similarity=0.228 Sum_probs=86.0
Q ss_pred CceeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEE
Q 029430 97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 174 (193)
Q Consensus 97 ~~~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~i 174 (193)
....+||+++|++|||||||+ +++++.+. .+.+|++..+ ...+.+++..+.+.|||++|++++..++..+++.+|++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 93 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF 93 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEE
Confidence 345799999999999999999 99999988 6777777665 46678899999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHhcC
Q 029430 175 LFMFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 175 llvyDit~~~Sf~~l~~W~ 193 (193)
|+|||++++++|+++.+|+
T Consensus 94 i~v~d~~~~~s~~~~~~~~ 112 (187)
T 2a9k_A 94 LCVFSITEMESFAATADFR 112 (187)
T ss_dssp EEEEETTCHHHHHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHH
Confidence 9999999999999998884
No 66
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.81 E-value=6.4e-20 Score=145.31 Aligned_cols=95 Identities=22% Similarity=0.482 Sum_probs=89.3
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEE
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 176 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~ill 176 (193)
..+||+++|++|||||||+ +++++.+. .+.++++.++....+.+++..+.+.|||++|++.+..++..+++.+|++|+
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 98 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIIL 98 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEE
Confidence 4689999999999999999 99999987 788899999988999999999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHhcC
Q 029430 177 MFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 177 vyDit~~~Sf~~l~~W~ 193 (193)
|||++++.+|+++.+|+
T Consensus 99 v~d~~~~~s~~~~~~~~ 115 (213)
T 3cph_A 99 VYDVTDERTFTNIKQWF 115 (213)
T ss_dssp EEETTCHHHHHTHHHHH
T ss_pred EEECCCHHHHHHHHHHH
Confidence 99999999999998884
No 67
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.81 E-value=1e-20 Score=148.91 Aligned_cols=96 Identities=10% Similarity=0.273 Sum_probs=61.9
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcC--ccc-cccccceeeeEEEEEEECCe--EEEEEEEeCCCCCCCCcchhhhccCC
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGN--EQE-RSLQMAGLNLINKTLMVQGA--RIAFSIWDVGGDSRSFDHVPIACKDA 171 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~--~f~-~~~~t~g~~~~~~~i~v~~~--~v~l~iwD~~G~e~~~~~~~~~~~~a 171 (193)
...+||+++|++|||||||+ +|+++ .|. .+.+|+|.++..+.+.+++. .+.++|||++|++++..++..+++++
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 35799999999999999999 99999 787 78889998998899999987 89999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHhcC
Q 029430 172 VAILFMFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 172 ~~illvyDit~~~Sf~~l~~W~ 193 (193)
|++|+|||++++++|+++.+|+
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~ 119 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWF 119 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHH
T ss_pred cEEEEEEECCCHHHHHHHHHHH
Confidence 9999999999999999999884
No 68
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.81 E-value=1e-19 Score=142.47 Aligned_cols=92 Identities=20% Similarity=0.315 Sum_probs=78.7
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcCccc--cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEE
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 174 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~~f~--~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~i 174 (193)
...+||+|+|++|||||||+ +|+++.|. .+.+|+|... ..+. +..+.++||||+|++++..++..+++++|++
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~--~~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 90 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNV--ETFE--KGRVAFTVFDMGGAKKFRGLWETYYDNIDAV 90 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEE--EEEE--ETTEEEEEEEECCSGGGGGGGGGGCTTCSEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeE--EEEE--eCCEEEEEEECCCCHhHHHHHHHHHhcCCEE
Confidence 34889999999999999999 99999987 4578888554 3444 4458999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHhcC
Q 029430 175 LFMFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 175 llvyDit~~~Sf~~l~~W~ 193 (193)
|+|||+++++||+++.+|+
T Consensus 91 i~v~D~~~~~s~~~~~~~~ 109 (199)
T 4bas_A 91 IFVVDSSDHLRLCVVKSEI 109 (199)
T ss_dssp EEEEETTCGGGHHHHHHHH
T ss_pred EEEEECCcHHHHHHHHHHH
Confidence 9999999999999998874
No 69
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.81 E-value=1.6e-19 Score=143.67 Aligned_cols=93 Identities=22% Similarity=0.387 Sum_probs=80.5
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEE
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 176 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~ill 176 (193)
..+||+++|++|||||||+ +++++.+. .+.+|++.++. ..+.+++..+.+.|||++|++++..++..+++++|++|+
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 102 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 102 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEE
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEE
Confidence 5789999999999999999 99999998 67788887765 457889999999999999999999999999999999999
Q ss_pred EEECCChhhHHHH-Hhc
Q 029430 177 MFDLTSRCTLNRF-DHN 192 (193)
Q Consensus 177 vyDit~~~Sf~~l-~~W 192 (193)
|||++++++|+++ ..|
T Consensus 103 v~d~~~~~s~~~~~~~~ 119 (207)
T 2fv8_A 103 CFSVDSPDSLENIPEKW 119 (207)
T ss_dssp EEETTCHHHHHHHHHTH
T ss_pred EEECCCHHHHHHHHHHH
Confidence 9999999999998 666
No 70
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.81 E-value=7.1e-20 Score=142.44 Aligned_cols=91 Identities=19% Similarity=0.327 Sum_probs=82.3
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccccccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEE
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illv 177 (193)
..+||+++|++|||||||+ +|++++|..+.+|+|.+. +.+.+++ +.+++||++|++++..++..+++++|++|+|
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v 95 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIVV 95 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSC--EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceee--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEEE
Confidence 4699999999999999999 999999987788888665 5666776 8899999999999999999999999999999
Q ss_pred EECCChhhHHHHHhcC
Q 029430 178 FDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 178 yDit~~~Sf~~l~~W~ 193 (193)
||++++++|+++.+|+
T Consensus 96 ~D~~~~~s~~~~~~~~ 111 (181)
T 2h17_A 96 VDSTDRERISVTREEL 111 (181)
T ss_dssp EETTCTTTHHHHHHHH
T ss_pred EECCCHHHHHHHHHHH
Confidence 9999999999998874
No 71
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.80 E-value=9.5e-20 Score=144.56 Aligned_cols=92 Identities=17% Similarity=0.224 Sum_probs=74.7
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcCccccccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEE
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 176 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~~f~~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~ill 176 (193)
...+||+++|++|||||||+ ++.++++..+.+|++.+. ..+.+++ +.+++|||+|++++..+++.+++++|++|+
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~--~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 98 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTS--EELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF 98 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSC--EEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCcee--EEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEE
Confidence 34689999999999999999 999999888888888764 5777887 899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHhcC
Q 029430 177 MFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 177 vyDit~~~Sf~~l~~W~ 193 (193)
|||+++++||+++.+|+
T Consensus 99 v~D~~~~~s~~~~~~~~ 115 (198)
T 1f6b_A 99 LVDCADHERLLESKEEL 115 (198)
T ss_dssp EEETTCGGGHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHH
Confidence 99999999999998874
No 72
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.80 E-value=1.6e-19 Score=136.39 Aligned_cols=94 Identities=14% Similarity=0.232 Sum_probs=85.2
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEE
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 176 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~ill 176 (193)
..+||+++|++|||||||+ +++++.+. .+.++++..+ .+.+.+++..+.+++||++|++++..++..++++++++++
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL 80 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 3689999999999999999 99999988 6667776444 6788899999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHhcC
Q 029430 177 MFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 177 vyDit~~~Sf~~l~~W~ 193 (193)
|||++++++|+++.+|+
T Consensus 81 v~d~~~~~s~~~~~~~~ 97 (167)
T 1kao_A 81 VYSLVNQQSFQDIKPMR 97 (167)
T ss_dssp EEETTCHHHHHHHHHHH
T ss_pred EEeCCCHHHHHHHHHHH
Confidence 99999999999998873
No 73
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.80 E-value=1.3e-19 Score=137.00 Aligned_cols=94 Identities=14% Similarity=0.217 Sum_probs=82.7
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEE
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 176 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~ill 176 (193)
..+||+++|++|||||||+ +++++.+. .+.+|++..+ ...+.+++..+.+.+||++|++++..++..+++.++++++
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence 3689999999999999999 99999988 6777877665 4667889999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHhcC
Q 029430 177 MFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 177 vyDit~~~Sf~~l~~W~ 193 (193)
|||++++++|+++.+|+
T Consensus 82 v~d~~~~~s~~~~~~~~ 98 (168)
T 1u8z_A 82 VFSITEMESFAATADFR 98 (168)
T ss_dssp EEETTCHHHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHH
Confidence 99999999999998884
No 74
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.80 E-value=3.6e-20 Score=142.88 Aligned_cols=94 Identities=21% Similarity=0.376 Sum_probs=70.4
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEE
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 176 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~ill 176 (193)
..+||+++|++|||||||+ +|+++.|. .+.+|++..+. ..+.+++..+.+++||++|+++|..++..+++++|++|+
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 85 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 85 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEE
Confidence 4689999999999999999 99999988 77788876653 456678888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHH-hcC
Q 029430 177 MFDLTSRCTLNRFD-HNQ 193 (193)
Q Consensus 177 vyDit~~~Sf~~l~-~W~ 193 (193)
|||++++++|+++. .|+
T Consensus 86 v~d~~~~~s~~~~~~~~~ 103 (182)
T 3bwd_D 86 AFSLISKASYENVSKKWI 103 (182)
T ss_dssp EEETTCHHHHHHHHHTHH
T ss_pred EEECCCHHHHHHHHHHHH
Confidence 99999999999997 673
No 75
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.80 E-value=1e-19 Score=145.79 Aligned_cols=95 Identities=25% Similarity=0.346 Sum_probs=66.3
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEE
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~il 175 (193)
...+||+++|++|||||||+ +|+++.+. .+.+|++..+ ...+.+++..+.++|||++|+++|..++..+++++|++|
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 110 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL 110 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence 35799999999999999999 99999988 6777876555 567888999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-hcC
Q 029430 176 FMFDLTSRCTLNRFD-HNQ 193 (193)
Q Consensus 176 lvyDit~~~Sf~~l~-~W~ 193 (193)
+|||++++++|+++. .|+
T Consensus 111 ~v~d~~~~~s~~~~~~~~~ 129 (214)
T 2j1l_A 111 LCFDVTSPNSFDNIFNRWY 129 (214)
T ss_dssp EEEETTCHHHHHHHHHTHH
T ss_pred EEEECcCHHHHHHHHHHHH
Confidence 999999999999996 673
No 76
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.80 E-value=2.5e-19 Score=141.34 Aligned_cols=96 Identities=24% Similarity=0.443 Sum_probs=89.8
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEE
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~il 175 (193)
...+||+++|++|||||||+ ++.+..+. .+.+|+|.++....+.+++..+.+++||++|++++..++..+++.+++++
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 106 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGAL 106 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEE
Confidence 34799999999999999999 99999988 78899999999999999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHhcC
Q 029430 176 FMFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 176 lvyDit~~~Sf~~l~~W~ 193 (193)
+|||+++..+|+++..|+
T Consensus 107 ~v~d~~~~~s~~~~~~~~ 124 (191)
T 1oix_A 107 LVYDIAKHLTYENVERWL 124 (191)
T ss_dssp EEEETTCHHHHHTHHHHH
T ss_pred EEEECcCHHHHHHHHHHH
Confidence 999999999999988773
No 77
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.80 E-value=1.5e-19 Score=142.25 Aligned_cols=95 Identities=15% Similarity=0.228 Sum_probs=86.6
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEE
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~il 175 (193)
...+||+++|++|||||||+ +++++.+. .+.+|++..+ ...+.+++..+.+.+||++|++++..++..+++.++++|
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 90 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 90 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEE
Confidence 45799999999999999999 99999988 6777887665 467888999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHhcC
Q 029430 176 FMFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 176 lvyDit~~~Sf~~l~~W~ 193 (193)
+|||++++++|+.+.+|+
T Consensus 91 ~v~d~~~~~s~~~~~~~~ 108 (206)
T 2bov_A 91 CVFSITEMESFAATADFR 108 (206)
T ss_dssp EEEETTCHHHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHH
Confidence 999999999999998884
No 78
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.80 E-value=5.7e-20 Score=139.51 Aligned_cols=89 Identities=24% Similarity=0.417 Sum_probs=79.1
Q ss_pred eEEEEECCCCCChhhHH-hhhcCccccccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEEEE
Q 029430 101 LKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD 179 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~~~f~~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illvyD 179 (193)
+||+++|++|||||||+ ++++++|..+.||++... ..+..+ .+.+++||++|++++..++..+++++|++|+|||
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 76 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 76 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCE--EEEECS--SCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCcccCcCceeE--EEEEEC--CEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEE
Confidence 59999999999999999 999999887788888443 455544 4889999999999999999999999999999999
Q ss_pred CCChhhHHHHHhcC
Q 029430 180 LTSRCTLNRFDHNQ 193 (193)
Q Consensus 180 it~~~Sf~~l~~W~ 193 (193)
+++++||+++.+|+
T Consensus 77 ~~~~~s~~~~~~~~ 90 (164)
T 1r8s_A 77 SNDRERVNEAREEL 90 (164)
T ss_dssp TTCGGGHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999998874
No 79
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.80 E-value=1e-19 Score=142.55 Aligned_cols=91 Identities=21% Similarity=0.422 Sum_probs=81.7
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEE
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 176 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~ill 176 (193)
..+||+++|++|||||||+ +|+++++. .+.+|++.++. .+..+ .+.++|||++|++++..++..+++++|++|+
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 96 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITKG--NVTIKLWDIGGQPRFRSMWERYCRGVSAIVY 96 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEET--TEEEEEEEECCSHHHHTTHHHHHTTCSEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE--EEEeC--CEEEEEEECCCCHhHHHHHHHHHccCCEEEE
Confidence 4799999999999999999 99999998 78889988764 34444 4889999999999999999999999999999
Q ss_pred EEECCChhhHHHHHhcC
Q 029430 177 MFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 177 vyDit~~~Sf~~l~~W~ 193 (193)
|||++++++|+++.+|+
T Consensus 97 v~D~~~~~s~~~~~~~~ 113 (188)
T 1zd9_A 97 MVDAADQEKIEASKNEL 113 (188)
T ss_dssp EEETTCGGGHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHH
Confidence 99999999999998874
No 80
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.80 E-value=2.8e-19 Score=138.45 Aligned_cols=94 Identities=14% Similarity=0.251 Sum_probs=82.4
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEE
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 176 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~ill 176 (193)
..+||+++|++|||||||+ +++++.+. .+.+|++ +.....+.+++..+.+++||++|++.+..++..+++.++++++
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 4799999999999999999 99999988 6666665 4556778899999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHhcC
Q 029430 177 MFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 177 vyDit~~~Sf~~l~~W~ 193 (193)
|||++++++|+++..|+
T Consensus 82 v~d~~~~~s~~~~~~~~ 98 (189)
T 4dsu_A 82 VFAINNTKSFEDIHHYR 98 (189)
T ss_dssp EEETTCHHHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHH
Confidence 99999999999998883
No 81
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.80 E-value=1.5e-19 Score=141.46 Aligned_cols=91 Identities=21% Similarity=0.323 Sum_probs=80.6
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCc-cc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEE
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNE-QE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~-f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~il 175 (193)
..+||+++|++|||||||+ +|+++. +. .+.+|++.. .+.+.+++ +.+.+||++|++++..++..+++++|++|
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 95 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFS--IEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQAII 95 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEE--EEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCcccee--EEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence 3699999999999999999 999998 55 777788744 46677776 78999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHhcC
Q 029430 176 FMFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 176 lvyDit~~~Sf~~l~~W~ 193 (193)
+|||+++++||+++.+|+
T Consensus 96 ~v~d~~~~~s~~~~~~~~ 113 (190)
T 2h57_A 96 FVIDSSDRLRMVVAKEEL 113 (190)
T ss_dssp EEEETTCHHHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHH
Confidence 999999999999998874
No 82
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.80 E-value=1.3e-19 Score=141.44 Aligned_cols=91 Identities=20% Similarity=0.380 Sum_probs=81.5
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccccccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEE
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illv 177 (193)
..+||+++|++|||||||+ ++.++.+..+.+|+|.. .+.+.+++ +.+++||++|++.+..++..+++++|++|+|
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v 90 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFN--IKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDILIYV 90 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEE--EEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeE--EEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEEE
Confidence 4699999999999999999 99998777888898854 35667775 8899999999999999999999999999999
Q ss_pred EECCChhhHHHHHhcC
Q 029430 178 FDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 178 yDit~~~Sf~~l~~W~ 193 (193)
||++++++|+++.+|+
T Consensus 91 ~d~~~~~s~~~~~~~~ 106 (181)
T 1fzq_A 91 IDSADRKRFEETGQEL 106 (181)
T ss_dssp EETTCGGGHHHHHHHH
T ss_pred EECcCHHHHHHHHHHH
Confidence 9999999999988773
No 83
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.80 E-value=2.3e-19 Score=141.35 Aligned_cols=92 Identities=16% Similarity=0.178 Sum_probs=82.0
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcCccccccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEE
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 176 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~~f~~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~ill 176 (193)
...+||+++|++|||||||+ ++.++++..+.+|++.. ...+.+++ +.+++||++|++++..++..+++++|++|+
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 96 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPT--SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVF 96 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCE--EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCC--eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence 34689999999999999999 99999988888888875 36777887 889999999999999999999999999999
Q ss_pred EEECCChhhHHHHHhcC
Q 029430 177 MFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 177 vyDit~~~Sf~~l~~W~ 193 (193)
|||+++++||+++.+|+
T Consensus 97 v~d~~~~~s~~~~~~~~ 113 (190)
T 1m2o_B 97 LVDAADPERFDEARVEL 113 (190)
T ss_dssp EEETTCGGGHHHHHHHH
T ss_pred EEECCChHHHHHHHHHH
Confidence 99999999999998874
No 84
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.80 E-value=4e-19 Score=138.55 Aligned_cols=95 Identities=13% Similarity=0.228 Sum_probs=75.1
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEE
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~il 175 (193)
...+||+++|++|||||||+ +++++.+. .+.+|++..+ ...+.+++..+.+.+||++|++++..++..+++.+++++
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 97 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 97 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTCSEEE
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEE
Confidence 35799999999999999999 99999888 6667776555 567888999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHhcC
Q 029430 176 FMFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 176 lvyDit~~~Sf~~l~~W~ 193 (193)
+|||++++++|+++..|+
T Consensus 98 ~v~d~~~~~s~~~~~~~~ 115 (190)
T 3con_A 98 CVFAINNSKSFADINLYR 115 (190)
T ss_dssp EEEETTCHHHHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHH
Confidence 999999999999998884
No 85
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.79 E-value=3.5e-19 Score=140.87 Aligned_cols=95 Identities=24% Similarity=0.479 Sum_probs=86.7
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEE
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 176 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~ill 176 (193)
..+||+++|++|||||||+ ++.+..|. .+.+|+|.++....+.++|..+.+++||++|++++..++..++++++++|+
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~ 83 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALL 83 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEE
Confidence 4799999999999999999 99999988 778899999988999999999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHhcC
Q 029430 177 MFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 177 vyDit~~~Sf~~l~~W~ 193 (193)
|||+++..+|+++..|+
T Consensus 84 v~d~~~~~s~~~~~~~~ 100 (199)
T 2f9l_A 84 VYDIAKHLTYENVERWL 100 (199)
T ss_dssp EEETTCHHHHHTHHHHH
T ss_pred EEECcCHHHHHHHHHHH
Confidence 99999999999988773
No 86
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.79 E-value=2.6e-19 Score=140.87 Aligned_cols=94 Identities=12% Similarity=0.223 Sum_probs=84.8
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEE
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~il 175 (193)
...+||+++|++|||||||+ +|++++|. .+.+|++.++ .+.+.+++..+.+++||++|++. ..++..+++.++++|
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ii 103 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFV 103 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEE
Confidence 34799999999999999999 99999998 7778888665 56788899999999999999999 788899999999999
Q ss_pred EEEECCChhhHHHHHhcC
Q 029430 176 FMFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 176 lvyDit~~~Sf~~l~~W~ 193 (193)
+|||++++++|+++.+|+
T Consensus 104 lv~D~~~~~s~~~~~~~~ 121 (196)
T 2atv_A 104 LVYDITDRGSFEEVLPLK 121 (196)
T ss_dssp EEEETTCHHHHHTHHHHH
T ss_pred EEEECcCHHHHHHHHHHH
Confidence 999999999999998873
No 87
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.79 E-value=1.6e-20 Score=146.82 Aligned_cols=94 Identities=14% Similarity=0.355 Sum_probs=73.5
Q ss_pred eeEEEEECCCCCChhhHH-hhhcC--ccc-cccccceeeeEEEEEEE---CCeEEEEEEEeCCCCCCCCcchhhhccCCc
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGN--EQE-RSLQMAGLNLINKTLMV---QGARIAFSIWDVGGDSRSFDHVPIACKDAV 172 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~--~f~-~~~~t~g~~~~~~~i~v---~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~ 172 (193)
.+||+++|++|||||||+ +|++. .|. .+.+|+|.++..+.+.+ ++..+.+++||++|+++|..+++.|+++++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 589999999999999999 99985 455 67889999988777665 346789999999999999999999999999
Q ss_pred EEEEEEECCCh-hhHHHHHhcC
Q 029430 173 AILFMFDLTSR-CTLNRFDHNQ 193 (193)
Q Consensus 173 ~illvyDit~~-~Sf~~l~~W~ 193 (193)
++++|||++++ .+|+++.+|+
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~ 103 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWL 103 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHH
T ss_pred EEEEEEeCCcchhHHHHHHHHH
Confidence 99999999997 5899999884
No 88
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.79 E-value=3.4e-19 Score=140.55 Aligned_cols=92 Identities=22% Similarity=0.361 Sum_probs=77.0
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcCccccccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEE
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 176 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~~f~~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~ill 176 (193)
...+||+++|++|||||||+ ++++++|..+.||++.. .+.+..++ +.+++||++|++++..++..+++++|++|+
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~iil 102 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN--VETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGLIF 102 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETTEE--EEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCccccCCcCcee--EEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 34799999999999999999 99999998778888844 35566655 889999999999999999999999999999
Q ss_pred EEECCChhhHHHHHhcC
Q 029430 177 MFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 177 vyDit~~~Sf~~l~~W~ 193 (193)
|||++++++|+++.+|+
T Consensus 103 v~D~~~~~s~~~~~~~l 119 (192)
T 2b6h_A 103 VVDSNDRERVQESADEL 119 (192)
T ss_dssp EEETTCGGGHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHH
Confidence 99999999999998874
No 89
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.79 E-value=2.6e-19 Score=139.70 Aligned_cols=91 Identities=19% Similarity=0.327 Sum_probs=78.6
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccccccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEE
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illv 177 (193)
..+||+++|++|||||||+ +++++++..+.+|+|.+. +.+.+++ +.+++||++|++++..++..+++++|++|+|
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v 90 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIVV 90 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSC--EEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccce--EEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence 3789999999999999999 999999887788888554 5667776 8899999999999999999999999999999
Q ss_pred EECCChhhHHHHHhcC
Q 029430 178 FDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 178 yDit~~~Sf~~l~~W~ 193 (193)
||+++++||+++.+|+
T Consensus 91 ~d~~~~~s~~~~~~~~ 106 (187)
T 1zj6_A 91 VDSTDRERISVTREEL 106 (187)
T ss_dssp EETTCTTTHHHHHHHH
T ss_pred EeCCCHHHHHHHHHHH
Confidence 9999999999998874
No 90
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.79 E-value=3.9e-19 Score=135.51 Aligned_cols=90 Identities=20% Similarity=0.352 Sum_probs=81.3
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCccccccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEEE
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 178 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f~~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illvy 178 (193)
.+||+++|++|||||||+ ++.++++..+.+|+|... ..+.+++ +.+++||++|++++..++..+++++|++|+||
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 82 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNV--ETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVV 82 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEE--EEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEEEEE
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccce--EEEEECC--EEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 689999999999999999 999999988888887654 5666664 88999999999999999999999999999999
Q ss_pred ECCChhhHHHHHhcC
Q 029430 179 DLTSRCTLNRFDHNQ 193 (193)
Q Consensus 179 Dit~~~Sf~~l~~W~ 193 (193)
|++++++|+++.+|+
T Consensus 83 d~~~~~s~~~~~~~~ 97 (171)
T 1upt_A 83 DSCDRDRIGISKSEL 97 (171)
T ss_dssp ETTCCTTHHHHHHHH
T ss_pred ECCCHHHHHHHHHHH
Confidence 999999999988774
No 91
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.79 E-value=3.6e-19 Score=135.37 Aligned_cols=92 Identities=15% Similarity=0.285 Sum_probs=84.1
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEE
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illv 177 (193)
.+||+++|++|||||||+ +++++.+. .+.++++..+ ...+..++..+.+.+||++|++++..++..+++.+|++|+|
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 81 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence 689999999999999999 99999988 6778887665 45677888899999999999999999999999999999999
Q ss_pred EECCChhhHHHHHhc
Q 029430 178 FDLTSRCTLNRFDHN 192 (193)
Q Consensus 178 yDit~~~Sf~~l~~W 192 (193)
||++++++|+++..|
T Consensus 82 ~d~~~~~~~~~~~~~ 96 (172)
T 2erx_A 82 YSITSRQSLEELKPI 96 (172)
T ss_dssp EETTCHHHHHTTHHH
T ss_pred EECcCHHHHHHHHHH
Confidence 999999999998877
No 92
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.78 E-value=3.3e-19 Score=142.29 Aligned_cols=97 Identities=24% Similarity=0.369 Sum_probs=85.5
Q ss_pred CceeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECC-eEEEEEEEeCCCCCCCCcchhhhccCCcE
Q 029430 97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQG-ARIAFSIWDVGGDSRSFDHVPIACKDAVA 173 (193)
Q Consensus 97 ~~~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~-~~v~l~iwD~~G~e~~~~~~~~~~~~a~~ 173 (193)
....+||+++|++|||||||+ +++++.+. .+.+|.+.+.....+..++ ..+.+.+||++|++.+..++..+++++|+
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASG 87 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSE
T ss_pred ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCE
Confidence 345899999999999999999 99999988 7778888887766665544 44999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHhcC
Q 029430 174 ILFMFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 174 illvyDit~~~Sf~~l~~W~ 193 (193)
+|+|||++++.+|+++.+|+
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~ 107 (218)
T 4djt_A 88 AILFFDVTSRITCQNLARWV 107 (218)
T ss_dssp EEEEEETTCHHHHHTHHHHH
T ss_pred EEEEEeCCCHHHHHHHHHHH
Confidence 99999999999999998884
No 93
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.78 E-value=6.7e-19 Score=132.63 Aligned_cols=93 Identities=13% Similarity=0.239 Sum_probs=84.4
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEE
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illv 177 (193)
.+||+++|++|||||||+ ++.++.+. .+.++++..+ .+.+.+++..+.+.+||++|++++..++..+++.+|++++|
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 689999999999999999 99999887 6667776554 57788899999999999999999999999999999999999
Q ss_pred EECCChhhHHHHHhcC
Q 029430 178 FDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 178 yDit~~~Sf~~l~~W~ 193 (193)
||++++++|+++.+|+
T Consensus 82 ~d~~~~~~~~~~~~~~ 97 (166)
T 2ce2_X 82 FAINNTKSFEDIHQYR 97 (166)
T ss_dssp EETTCHHHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHH
Confidence 9999999999998884
No 94
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.78 E-value=1.2e-19 Score=143.21 Aligned_cols=93 Identities=22% Similarity=0.333 Sum_probs=74.4
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccccccccceeeeEEEEEE--E-CCeEEEEEEEeCCCCCCCCcch---hhhccCC
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLM--V-QGARIAFSIWDVGGDSRSFDHV---PIACKDA 171 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~~~~~t~g~~~~~~~i~--v-~~~~v~l~iwD~~G~e~~~~~~---~~~~~~a 171 (193)
..+||+++|++|||||||+ ++.+ +|... ++++.++..+.+. + ++..+.++|||++|+++|..+. ..+++++
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 96 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFH-KMSPN-ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGT 96 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHS-CCCGG-GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHTC
T ss_pred cceEEEEECCCCCCHHHHHHHHHh-cCCCc-ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccccC
Confidence 4799999999999999999 6655 44422 5555555544443 3 3677999999999999998877 8999999
Q ss_pred cEEEEEEECCCh--hhHHHHHhcC
Q 029430 172 VAILFMFDLTSR--CTLNRFDHNQ 193 (193)
Q Consensus 172 ~~illvyDit~~--~Sf~~l~~W~ 193 (193)
+++|+|||++++ ++++.+.+|+
T Consensus 97 ~~~i~v~d~~~~~~~~~~~~~~~l 120 (196)
T 3llu_A 97 GALIYVIDAQDDYMEALTRLHITV 120 (196)
T ss_dssp SEEEEEEETTSCCHHHHHHHHHHH
T ss_pred CEEEEEEECCCchHHHHHHHHHHH
Confidence 999999999998 7888887774
No 95
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.78 E-value=3.7e-19 Score=139.26 Aligned_cols=93 Identities=15% Similarity=0.259 Sum_probs=84.6
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEE
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 176 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~ill 176 (193)
..+||+++|++|||||||+ +++++.+. .+.+|++..+ ...+.+++..+.+.+||++|+++|..++..+++.+|++|+
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 85 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFIL 85 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE-EEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEE
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce-eEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEE
Confidence 4699999999999999999 99999988 6778887655 4667789999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHhc
Q 029430 177 MFDLTSRCTLNRFDHN 192 (193)
Q Consensus 177 vyDit~~~Sf~~l~~W 192 (193)
|||++++++|+++..|
T Consensus 86 v~d~~~~~s~~~~~~~ 101 (199)
T 2gf0_A 86 VFSVTSKQSLEELGPI 101 (199)
T ss_dssp EEETTCHHHHHTTHHH
T ss_pred EEECcCHHHHHHHHHH
Confidence 9999999999998876
No 96
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.77 E-value=5.3e-19 Score=137.95 Aligned_cols=91 Identities=25% Similarity=0.423 Sum_probs=81.5
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccccccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEE
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illv 177 (193)
..+||+++|++|||||||+ ++.++++..+.||+|... ..+.+++ +.+++|||+|++++..++..+++++|++|+|
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v 96 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNL--ETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVIYV 96 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCCE--EEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceEE--EEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEEEE
Confidence 4789999999999999999 999999888888888554 5566665 8899999999999999999999999999999
Q ss_pred EECCChhhHHHHHhcC
Q 029430 178 FDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 178 yDit~~~Sf~~l~~W~ 193 (193)
||++++++|+++.+|+
T Consensus 97 ~d~~~~~s~~~~~~~~ 112 (189)
T 2x77_A 97 VDSTDRDRMGVAKHEL 112 (189)
T ss_dssp EETTCCTTHHHHHHHH
T ss_pred EeCCCHHHHHHHHHHH
Confidence 9999999999988773
No 97
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.77 E-value=9e-19 Score=136.09 Aligned_cols=91 Identities=24% Similarity=0.426 Sum_probs=81.2
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccccccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEE
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illv 177 (193)
..+||+++|++|||||||+ ++++++...+.+|+|... +.+.+++ +.+++|||+|++++..++..+++++|++|+|
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v 92 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNI--KTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLIWV 92 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEE--EEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEEEE
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccce--EEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence 4799999999999999999 999988448888988554 5666665 8899999999999999999999999999999
Q ss_pred EECCChhhHHHHHhcC
Q 029430 178 FDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 178 yDit~~~Sf~~l~~W~ 193 (193)
||+++++||+++.+|+
T Consensus 93 ~d~~~~~s~~~~~~~~ 108 (186)
T 1ksh_A 93 VDSADRQRMQDCQREL 108 (186)
T ss_dssp EETTCGGGHHHHHHHH
T ss_pred EECcCHHHHHHHHHHH
Confidence 9999999999988874
No 98
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.76 E-value=1e-18 Score=135.00 Aligned_cols=91 Identities=23% Similarity=0.375 Sum_probs=78.1
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccccccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEE
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illv 177 (193)
..+||+++|++|||||||+ ++.++++..+.+|+|... ..+.+++ +.+.+||++|++++..++..+++++|++|+|
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v 92 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNV--ETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVIFV 92 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCE--EEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccce--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEEE
Confidence 4799999999999999999 999999887888888554 5666766 8899999999999999999999999999999
Q ss_pred EECCChhhHHHHHhcC
Q 029430 178 FDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 178 yDit~~~Sf~~l~~W~ 193 (193)
||++++++|+++.+|+
T Consensus 93 ~d~~~~~s~~~~~~~~ 108 (183)
T 1moz_A 93 VDSTDKDRMSTASKEL 108 (183)
T ss_dssp EETTCTTTHHHHHHHH
T ss_pred EECCCHHHHHHHHHHH
Confidence 9999999999998874
No 99
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.60 E-value=1e-19 Score=144.03 Aligned_cols=95 Identities=21% Similarity=0.359 Sum_probs=85.2
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEE
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~il 175 (193)
...+||+++|++|||||||+ +|+++.+. .+.+|++..+ ...+.+++..+.+++||++|+++|..++..+++++|++|
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL 106 (204)
Confidence 45799999999999999999 99999998 6677776555 567788888999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-hcC
Q 029430 176 FMFDLTSRCTLNRFD-HNQ 193 (193)
Q Consensus 176 lvyDit~~~Sf~~l~-~W~ 193 (193)
+|||++++++|+++. .|+
T Consensus 107 lv~D~~~~~s~~~~~~~~~ 125 (204)
T 3th5_A 107 ICFSLVSPASFENVRAKWY 125 (204)
Confidence 999999999999986 674
No 100
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.73 E-value=2.2e-18 Score=148.87 Aligned_cols=77 Identities=18% Similarity=0.240 Sum_probs=65.7
Q ss_pred EEEEECCCCCChhhHH-hhhcCcccc----ccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCc---chhhhccCCcE
Q 029430 102 KISLLGDCQIGKTSFV-KYVGNEQER----SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD---HVPIACKDAVA 173 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~~~f~~----~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~---~~~~~~~~a~~ 173 (193)
||+++|++|||||||+ ++.++.+.. +.+|+|.++.. ++ ..++++||||+|||+|.. +++.||+++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 7999999999999999 887765542 56899988853 23 458999999999999975 46899999999
Q ss_pred EEEEEECCCh
Q 029430 174 ILFMFDLTSR 183 (193)
Q Consensus 174 illvyDit~~ 183 (193)
+|+|||++++
T Consensus 76 ~IlV~Ditd~ 85 (331)
T 3r7w_B 76 LVYVIDSQDE 85 (331)
T ss_dssp EEEECCCSSC
T ss_pred EEEEEECCch
Confidence 9999999998
No 101
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.73 E-value=1.3e-17 Score=140.46 Aligned_cols=92 Identities=22% Similarity=0.371 Sum_probs=84.4
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEE
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illv 177 (193)
.+||+++|++|||||||+ +|+++.+. .+.+|++..+ ...+.+++..+.+++||++|++.+..++..+++.+|++|+|
T Consensus 155 ~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 233 (332)
T 2wkq_A 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLIC 233 (332)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEE
T ss_pred eeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEE
Confidence 589999999999999999 99999988 7777887655 57788899999999999999999999999999999999999
Q ss_pred EECCChhhHHHHH-hc
Q 029430 178 FDLTSRCTLNRFD-HN 192 (193)
Q Consensus 178 yDit~~~Sf~~l~-~W 192 (193)
||++++.||+++. .|
T Consensus 234 ~d~~~~~s~~~~~~~~ 249 (332)
T 2wkq_A 234 FSLVSPASFHHVRAKW 249 (332)
T ss_dssp EETTCHHHHHHHHHTH
T ss_pred EeCCCHHHHHHHHHHH
Confidence 9999999999986 56
No 102
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.72 E-value=1.4e-17 Score=143.05 Aligned_cols=91 Identities=23% Similarity=0.388 Sum_probs=76.2
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccccccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEE
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illv 177 (193)
..+||+|+|++|||||||+ +|.++.|....+|++.++. .+..++ +.++||||+|++.|..++..+++.+|++|+|
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~pT~~~~~~--~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV 239 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE--TVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 239 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEEEEETTEEEE--EEEETT--EEEEEEECC-----CCSHHHHHTTEEEEEEE
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCcccccceEEE--EEecCc--EEEEEEECCCCHhHHHHHHHHhccCCEEEEE
Confidence 4789999999999999999 9999998866788887763 444544 8899999999999999999999999999999
Q ss_pred EECCChhhHHHHHhcC
Q 029430 178 FDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 178 yDit~~~Sf~~l~~W~ 193 (193)
||++++++|+++.+|+
T Consensus 240 ~D~~~~~s~~~~~~~~ 255 (329)
T 3o47_A 240 VDSNDRERVNEAREEL 255 (329)
T ss_dssp EETTCSSSHHHHHHHH
T ss_pred EECCchHHHHHHHHHH
Confidence 9999999999988763
No 103
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.72 E-value=1.2e-17 Score=149.81 Aligned_cols=92 Identities=21% Similarity=0.370 Sum_probs=82.4
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcCccccccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEE
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 176 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~~f~~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~ill 176 (193)
...+||+++|++|||||||+ +|+++++..+.+|+|.++. .+.+++ +.+.||||+|++.|..++..+++++|++|+
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~~~T~~~~~~--~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~ 395 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE--TVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 395 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEE--EEESSS--CEEEEEEECCCGGGSGGGGGGGTTCCEEEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCCcCCccceeEE--EEEeCC--EEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 45799999999999999999 9999998888889987763 444444 789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHhcC
Q 029430 177 MFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 177 vyDit~~~Sf~~l~~W~ 193 (193)
|||++++++|+++.+|+
T Consensus 396 V~D~~~~~s~~~~~~~~ 412 (497)
T 3lvq_E 396 VVDCADRDRIDEARQEL 412 (497)
T ss_dssp EEETTCGGGHHHHHHHH
T ss_pred EEECcchhHHHHHHHHH
Confidence 99999999999998874
No 104
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.72 E-value=2.4e-17 Score=126.48 Aligned_cols=91 Identities=10% Similarity=0.133 Sum_probs=79.8
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEE
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 176 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~ill 176 (193)
..+||+++|++|||||||+ +|+++.+. .+.++++.++..+.+.+++. .+.+|||+|+++|..++..++..+|++|+
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 84 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIVIL 84 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEEEE
Confidence 4789999999999999999 99999988 66777777777778888884 56799999999999999999999999999
Q ss_pred EEECCC---hhhHHHHHh
Q 029430 177 MFDLTS---RCTLNRFDH 191 (193)
Q Consensus 177 vyDit~---~~Sf~~l~~ 191 (193)
|||+++ .++++.+..
T Consensus 85 v~d~~~~~~~~~~~~l~~ 102 (178)
T 2lkc_A 85 VVAADDGVMPQTVEAINH 102 (178)
T ss_dssp EEETTCCCCHHHHHHHHH
T ss_pred EEECCCCCcHHHHHHHHH
Confidence 999999 777776653
No 105
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.71 E-value=1.4e-17 Score=141.56 Aligned_cols=90 Identities=20% Similarity=0.301 Sum_probs=78.0
Q ss_pred eeEEEEECCCCCChhhHH-hhhcC--ccc--cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCC-----Ccchhhhcc
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGN--EQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS-----FDHVPIACK 169 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~--~f~--~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~-----~~~~~~~~~ 169 (193)
.+||+++|++|||||||+ +++++ .+. .+.+|++.++. .+.+++ .+.++|||++|++++ ..++..+++
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~--~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 79 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS--HLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIFQ 79 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE--EEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE--EEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHhc
Confidence 689999999999999999 99988 443 45668887775 445554 689999999999998 789999999
Q ss_pred CCcEEEEEEECCChhhHHHHHhc
Q 029430 170 DAVAILFMFDLTSRCTLNRFDHN 192 (193)
Q Consensus 170 ~a~~illvyDit~~~Sf~~l~~W 192 (193)
++|++|+|||+++++||+++..|
T Consensus 80 ~ad~vi~V~D~t~~~s~~~l~~~ 102 (307)
T 3r7w_A 80 MVQVLIHVFDVESTEVLKDIEIF 102 (307)
T ss_dssp TCSEEEEEEETTCSCHHHHHHHH
T ss_pred cCCEEEEEEECCChhhHHHHHHH
Confidence 99999999999999999999776
No 106
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.71 E-value=7.3e-19 Score=145.58 Aligned_cols=95 Identities=12% Similarity=0.114 Sum_probs=75.2
Q ss_pred eeeEEEEECCC---------CCChhhHH-hhhc---Cccc-cccccc-eeeeEEEEEE--------------ECCeEEEE
Q 029430 99 VSLKISLLGDC---------QIGKTSFV-KYVG---NEQE-RSLQMA-GLNLINKTLM--------------VQGARIAF 149 (193)
Q Consensus 99 ~~~KivllGd~---------gvGKTSLl-r~~~---~~f~-~~~~t~-g~~~~~~~i~--------------v~~~~v~l 149 (193)
..+||+++|++ |||||||+ +|++ +.|. .+.+|+ +.++..+.+. +++..+.+
T Consensus 18 ~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l 97 (255)
T 3c5h_A 18 GTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECKM 97 (255)
T ss_dssp SCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------CE
T ss_pred ceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEEEE
Confidence 47999999999 99999999 9999 5666 667776 6666555443 56788999
Q ss_pred EEEe-----------------------CCCCCCCCcchhhhcc---------------------CCcEEEEEEECCCh--
Q 029430 150 SIWD-----------------------VGGDSRSFDHVPIACK---------------------DAVAILFMFDLTSR-- 183 (193)
Q Consensus 150 ~iwD-----------------------~~G~e~~~~~~~~~~~---------------------~a~~illvyDit~~-- 183 (193)
+||| ++|+|+|..++..+|+ ++|++|+|||++++
T Consensus 98 ~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~~ 177 (255)
T 3c5h_A 98 HIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMN 177 (255)
T ss_dssp EEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC---
T ss_pred EEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCch
Confidence 9999 8899999999999998 79999999999999
Q ss_pred hhHHHHHhcC
Q 029430 184 CTLNRFDHNQ 193 (193)
Q Consensus 184 ~Sf~~l~~W~ 193 (193)
+||+++.+|+
T Consensus 178 ~s~~~~~~~l 187 (255)
T 3c5h_A 178 RNFDDQLKFV 187 (255)
T ss_dssp -CHHHHHHHH
T ss_pred hhHHHHHHHH
Confidence 9999999884
No 107
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.71 E-value=5.8e-18 Score=134.65 Aligned_cols=93 Identities=13% Similarity=0.109 Sum_probs=76.4
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcCccccccccceeeeEEEEEEECCe-EEEEEEEeCCCCCCCCc-chhhhccCCcEE
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGA-RIAFSIWDVGGDSRSFD-HVPIACKDAVAI 174 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~~f~~~~~t~g~~~~~~~i~v~~~-~v~l~iwD~~G~e~~~~-~~~~~~~~a~~i 174 (193)
...+||+++|++|||||||+ +|+++.|...+++++.++.. +.+++. .+.++||||+|+++|.. ++..|+++++++
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 82 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAV 82 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEE
Confidence 34789999999999999999 99999998555666666643 667755 68999999999999988 888999999999
Q ss_pred EEEEECCChh-hHHHHHhc
Q 029430 175 LFMFDLTSRC-TLNRFDHN 192 (193)
Q Consensus 175 llvyDit~~~-Sf~~l~~W 192 (193)
|+|||+++.+ ++..+.+|
T Consensus 83 i~v~d~~~~~~~~~~~~~~ 101 (214)
T 2fh5_B 83 VFVVDSAAFQREVKDVAEF 101 (214)
T ss_dssp EEEEETTTHHHHHHHHHHH
T ss_pred EEEEECCCcCHHHHHHHHH
Confidence 9999999954 56665544
No 108
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.64 E-value=1e-15 Score=117.39 Aligned_cols=86 Identities=15% Similarity=0.114 Sum_probs=67.8
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCC------cchhhhcc--
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF------DHVPIACK-- 169 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~------~~~~~~~~-- 169 (193)
.+||+++|++|||||||+ ++.+..+. .+.++++.+.....+.+++ ..+++|||+|++++. .+...|++
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE 80 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence 589999999999999999 99998876 6667766777667777776 689999999999886 34466775
Q ss_pred CCcEEEEEEECCChhhHH
Q 029430 170 DAVAILFMFDLTSRCTLN 187 (193)
Q Consensus 170 ~a~~illvyDit~~~Sf~ 187 (193)
+++++++|||+++.+++.
T Consensus 81 ~~~~~i~v~D~~~~~~~~ 98 (165)
T 2wji_A 81 KPDLVVNIVDATALERNL 98 (165)
T ss_dssp CCSEEEEEEETTCHHHHH
T ss_pred CCCEEEEEecCCchhHhH
Confidence 899999999999976543
No 109
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.61 E-value=2.4e-15 Score=116.61 Aligned_cols=85 Identities=15% Similarity=0.132 Sum_probs=70.6
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCC------cchhhhcc-
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF------DHVPIACK- 169 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~------~~~~~~~~- 169 (193)
..+||+++|++|||||||+ +++++.+. .+.++++.+.....+.+++ +.+++|||+|++.+. .++..|++
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 83 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN 83 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHhc
Confidence 5799999999999999999 99998776 6677777777777788776 789999999999986 34666775
Q ss_pred -CCcEEEEEEECCChhh
Q 029430 170 -DAVAILFMFDLTSRCT 185 (193)
Q Consensus 170 -~a~~illvyDit~~~S 185 (193)
.++++++|+|.++.+.
T Consensus 84 ~~~~~~i~v~d~~~~~~ 100 (188)
T 2wjg_A 84 EKPDLVVNIVDATALER 100 (188)
T ss_dssp HCCSEEEEEEEGGGHHH
T ss_pred cCCCEEEEEecchhHHH
Confidence 5999999999986443
No 110
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.60 E-value=2.5e-15 Score=116.47 Aligned_cols=90 Identities=21% Similarity=0.348 Sum_probs=71.8
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCccc--cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchh--------hhc
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVP--------IAC 168 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f~--~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~--------~~~ 168 (193)
.+||+++|++|||||||+ ++.+..+. ...+++..++....+.+++. .+.+|||+|++++..... .++
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQEI 81 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHHH
Confidence 579999999999999999 99988753 44555666777788888884 578999999987643221 368
Q ss_pred cCCcEEEEEEECCChhhHHHHHhc
Q 029430 169 KDAVAILFMFDLTSRCTLNRFDHN 192 (193)
Q Consensus 169 ~~a~~illvyDit~~~Sf~~l~~W 192 (193)
+++|++|+|||++++.||+. .+|
T Consensus 82 ~~ad~~i~v~D~~~~~s~~~-~~~ 104 (172)
T 2gj8_A 82 EQADRVLFMVDGTTTDAVDP-AEI 104 (172)
T ss_dssp HTCSEEEEEEETTTCCCCSH-HHH
T ss_pred HhCCEEEEEEECCCCCCHHH-HHH
Confidence 99999999999999998864 344
No 111
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.59 E-value=3e-16 Score=122.45 Aligned_cols=86 Identities=16% Similarity=0.150 Sum_probs=69.0
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCcccc----ccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccC---
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQER----SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKD--- 170 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~~----~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~--- 170 (193)
..+||+++|++|||||||+ ++.++.+.. +.++++.++ ..+.+.+||++|++.+...+..+++.
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 117 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTRAK 117 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC---------CCTTCSEEEETTCCBSSCCHHHHHHHHGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee---------cCCeEEEEECCCCchHHHHHHHHHHhhcc
Confidence 4689999999999999999 999988753 233333322 34678999999999999999888877
Q ss_pred -CcEEEEEEECC-ChhhHHHHHhcC
Q 029430 171 -AVAILFMFDLT-SRCTLNRFDHNQ 193 (193)
Q Consensus 171 -a~~illvyDit-~~~Sf~~l~~W~ 193 (193)
++++|+|||++ ++++|+++.+|+
T Consensus 118 ~~~~~i~v~d~~~~~~~~~~~~~~~ 142 (193)
T 2ged_A 118 FVKGLIFMVDSTVDPKKLTTTAEFL 142 (193)
T ss_dssp GEEEEEEEEETTCCHHHHHHHHHHH
T ss_pred cCCEEEEEEECCCCchhHHHHHHHH
Confidence 89999999999 999999988874
No 112
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.59 E-value=1.9e-16 Score=126.18 Aligned_cols=87 Identities=16% Similarity=0.140 Sum_probs=74.2
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcCcccc----ccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccC--
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQER----SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKD-- 170 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~~f~~----~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~-- 170 (193)
...+||+++|++|||||||+ ++.++.+.. +.++++.++ ..+.+.+||++|++.+...+..|++.
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 80 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTRA 80 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHHHHhcc
Confidence 34689999999999999999 999988763 445555443 44689999999999999999999987
Q ss_pred --CcEEEEEEECC-ChhhHHHHHhcC
Q 029430 171 --AVAILFMFDLT-SRCTLNRFDHNQ 193 (193)
Q Consensus 171 --a~~illvyDit-~~~Sf~~l~~W~ 193 (193)
++++|+|||++ ++++|+++.+|+
T Consensus 81 ~~~~~~i~v~D~~~~~~~~~~~~~~~ 106 (218)
T 1nrj_B 81 KFVKGLIFMVDSTVDPKKLTTTAEFL 106 (218)
T ss_dssp GGEEEEEEEEETTSCTTCCHHHHHHH
T ss_pred ccCCEEEEEEECCCChHHHHHHHHHH
Confidence 89999999999 999999988874
No 113
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.55 E-value=8.9e-15 Score=110.11 Aligned_cols=84 Identities=21% Similarity=0.289 Sum_probs=63.0
Q ss_pred eEEEEECCCCCChhhHH-hhhcCccc--cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCC-------CcchhhhccC
Q 029430 101 LKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS-------FDHVPIACKD 170 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~~~f~--~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~-------~~~~~~~~~~ 170 (193)
.||+++|++|||||||+ ++.++.+. ...++...+.....+..++. .+.+||++|++.+ ...+..+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 58999999999999999 99998865 44455556777777788774 7889999999984 3345567899
Q ss_pred CcEEEEEEECCChhhH
Q 029430 171 AVAILFMFDLTSRCTL 186 (193)
Q Consensus 171 a~~illvyDit~~~Sf 186 (193)
++++|+|||+++..++
T Consensus 80 ~~~~i~v~d~~~~~~~ 95 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQ 95 (161)
T ss_dssp CSEEEEEEESSSCCCH
T ss_pred CCEEEEEEECCCcccH
Confidence 9999999999986444
No 114
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.54 E-value=5.2e-16 Score=140.96 Aligned_cols=92 Identities=24% Similarity=0.433 Sum_probs=69.6
Q ss_pred CceeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEE------EEE--CCeEEEEEEEeCCCCCCCCcchhh
Q 029430 97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKT------LMV--QGARIAFSIWDVGGDSRSFDHVPI 166 (193)
Q Consensus 97 ~~~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~------i~v--~~~~v~l~iwD~~G~e~~~~~~~~ 166 (193)
....+||+++|++|||||||+ ++.++.|. .+.+|+|.++..+. +.+ ++..+.+.+||++|++.|..++..
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~ 117 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF 117 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence 456899999999999999999 99999998 78889999887552 222 345689999999999999999999
Q ss_pred hccCCcEEEEEEECCChhhHHH
Q 029430 167 ACKDAVAILFMFDLTSRCTLNR 188 (193)
Q Consensus 167 ~~~~a~~illvyDit~~~Sf~~ 188 (193)
++++++++|+|||+++.+.+..
T Consensus 118 ~l~~~d~ii~V~D~s~~~~~~~ 139 (535)
T 3dpu_A 118 FMTRSSVYMLLLDSRTDSNKHY 139 (535)
T ss_dssp HHHSSEEEEEEECGGGGGGHHH
T ss_pred HccCCcEEEEEEeCCCchhHHH
Confidence 9999999999999987655443
No 115
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.52 E-value=3e-15 Score=116.67 Aligned_cols=89 Identities=17% Similarity=0.221 Sum_probs=64.8
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCC----------CCCCCcchhh
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGG----------DSRSFDHVPI 166 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G----------~e~~~~~~~~ 166 (193)
..+||+++|++|||||||+ +++++.|. .+.++.|.........+++ .+.+|||+| ++.+..++..
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 98 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIET 98 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHHHH
Confidence 4689999999999999999 99999876 6666666555444455554 589999999 7777788888
Q ss_pred hccCC---cEEEEEEECCChhhHHHHH
Q 029430 167 ACKDA---VAILFMFDLTSRCTLNRFD 190 (193)
Q Consensus 167 ~~~~a---~~illvyDit~~~Sf~~l~ 190 (193)
+++.+ +++++|||++++.++++..
T Consensus 99 ~~~~~~~~~~~i~v~d~~~~~~~~~~~ 125 (195)
T 1svi_A 99 YITTREELKAVVQIVDLRHAPSNDDVQ 125 (195)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHHH
T ss_pred HHhhhhcCCEEEEEEECCCCCCHHHHH
Confidence 88877 9999999999988887753
No 116
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.52 E-value=2.5e-14 Score=115.37 Aligned_cols=86 Identities=23% Similarity=0.290 Sum_probs=62.5
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCC------C----CCcchhh
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS------R----SFDHVPI 166 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e------~----~~~~~~~ 166 (193)
..+||+++|++|||||||+ +|+++.+. ...+....++....+..++ +.+.||||+|+. + +.. ...
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~-~~~ 104 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTT-ITA 104 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHH-HHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHH-HHH
Confidence 4689999999999999999 99999886 3333333334334444555 789999999994 3 222 234
Q ss_pred hccCCcEEEEEEECCChhhHH
Q 029430 167 ACKDAVAILFMFDLTSRCTLN 187 (193)
Q Consensus 167 ~~~~a~~illvyDit~~~Sf~ 187 (193)
++..+|++|+|||++++.+|+
T Consensus 105 ~~~~~d~~i~v~d~~~~~s~~ 125 (228)
T 2qu8_A 105 LAHINGVILFIIDISEQCGLT 125 (228)
T ss_dssp HHTSSEEEEEEEETTCTTSSC
T ss_pred hhccccEEEEEEecccccCcc
Confidence 578899999999999998875
No 117
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.52 E-value=1e-15 Score=118.50 Aligned_cols=86 Identities=15% Similarity=0.171 Sum_probs=70.9
Q ss_pred eEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCC-----------CCCCCcchhhh
Q 029430 101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGG-----------DSRSFDHVPIA 167 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G-----------~e~~~~~~~~~ 167 (193)
+||+++|++|||||||+ +++++.|. .+.+++..+. ..+.++ .+.+|||+| ++.+..++..|
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~--~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKI--IEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 75 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSC--EEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCcccee--EEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence 69999999999999999 99999988 6666554443 344444 688999999 67777788888
Q ss_pred ccC-CcEEEEEEECCChhhHHHH-Hhc
Q 029430 168 CKD-AVAILFMFDLTSRCTLNRF-DHN 192 (193)
Q Consensus 168 ~~~-a~~illvyDit~~~Sf~~l-~~W 192 (193)
+++ ++++++|||++|..+|+++ ..|
T Consensus 76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~ 102 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGKAAPEIIKRW 102 (190)
T ss_dssp HHHHGGGCCEEEEEEETTHHHHHHHHH
T ss_pred HHhhhccCCEEEEEEcchhhhhHHHhh
Confidence 888 9999999999999999887 555
No 118
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.49 E-value=9.3e-14 Score=115.39 Aligned_cols=90 Identities=12% Similarity=0.084 Sum_probs=76.6
Q ss_pred eEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCc----------chhhhc
Q 029430 101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD----------HVPIAC 168 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~----------~~~~~~ 168 (193)
.||+++|++|||||||+ ++.+..+. ...+++..+.....+.+++. .+.+|||+|++.+.. +...|+
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 38999999999999999 99998776 66677777777788888874 889999999998874 556677
Q ss_pred --cCCcEEEEEEECCChhhHHHHHhc
Q 029430 169 --KDAVAILFMFDLTSRCTLNRFDHN 192 (193)
Q Consensus 169 --~~a~~illvyDit~~~Sf~~l~~W 192 (193)
.++|++|+|+|.++.+++..+..|
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l~~~ 105 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYLTSQ 105 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHHHHH
T ss_pred hhCCCCEEEEEeeCCCchhHHHHHHH
Confidence 899999999999999988887665
No 119
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.47 E-value=2.8e-13 Score=112.57 Aligned_cols=88 Identities=17% Similarity=0.127 Sum_probs=70.7
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcch------hhhc--
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHV------PIAC-- 168 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~------~~~~-- 168 (193)
..+||+++|++|||||||+ ++.+..+. ...+.+..+.....+..++ ..+.|||++|++.+...+ ..|+
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~ 81 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLLK 81 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHhh
Confidence 4789999999999999999 99998876 5666555565555555555 789999999999887633 5566
Q ss_pred cCCcEEEEEEECCChhhHHH
Q 029430 169 KDAVAILFMFDLTSRCTLNR 188 (193)
Q Consensus 169 ~~a~~illvyDit~~~Sf~~ 188 (193)
..+|++|+|+|.++.++...
T Consensus 82 ~~~d~ii~V~D~t~~~~~~~ 101 (258)
T 3a1s_A 82 GDADLVILVADSVNPEQSLY 101 (258)
T ss_dssp SCCSEEEEEEETTSCHHHHH
T ss_pred cCCCEEEEEeCCCchhhHHH
Confidence 58999999999999876654
No 120
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.42 E-value=9.1e-14 Score=107.64 Aligned_cols=91 Identities=12% Similarity=0.090 Sum_probs=69.3
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccccccccceeeeEEEEEEECCeEEEEEEEeCCC----------CCCCCcchhhh
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG----------DSRSFDHVPIA 167 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G----------~e~~~~~~~~~ 167 (193)
..+||+++|++|||||||+ +++++.+..+.++.+..........+. .+.+|||+| ++.+..+++.+
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 98 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRLVEDY 98 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHHHHHH
Confidence 4689999999999999999 999998666666666554433333333 577999999 66777788888
Q ss_pred ccCC---cEEEEEEECCCh--hhHHHHHhc
Q 029430 168 CKDA---VAILFMFDLTSR--CTLNRFDHN 192 (193)
Q Consensus 168 ~~~a---~~illvyDit~~--~Sf~~l~~W 192 (193)
++.+ +++++|+|.++. .++..+.+|
T Consensus 99 ~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~ 128 (195)
T 3pqc_A 99 FKNRWSLQMVFLLVDGRIPPQDSDLMMVEW 128 (195)
T ss_dssp HHHCTTEEEEEEEEETTSCCCHHHHHHHHH
T ss_pred HhcCcCceEEEEEecCCCCCCHHHHHHHHH
Confidence 8877 999999999886 344445555
No 121
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.42 E-value=3.4e-13 Score=112.77 Aligned_cols=91 Identities=15% Similarity=0.131 Sum_probs=73.2
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcc----------hhhh
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH----------VPIA 167 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~----------~~~~ 167 (193)
.+||+++|.+|||||||+ ++.+..+. ...+++..+.....+..++ ..+.+|||+|++.+... ...|
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~ 80 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHHH
Confidence 689999999999999999 99998876 6667666777777777766 45778999999987732 2333
Q ss_pred c--cCCcEEEEEEECCChhhHHHHHhc
Q 029430 168 C--KDAVAILFMFDLTSRCTLNRFDHN 192 (193)
Q Consensus 168 ~--~~a~~illvyDit~~~Sf~~l~~W 192 (193)
+ ..+|++|+|+|.++.+++..+..|
T Consensus 81 ~~~~~~d~ii~VvD~~~~~~~~~~~~~ 107 (274)
T 3i8s_A 81 ILSGDADLLINVVDASNLERNLYLTLQ 107 (274)
T ss_dssp HHHTCCSEEEEEEEGGGHHHHHHHHHH
T ss_pred HhhcCCCEEEEEecCCChHHHHHHHHH
Confidence 3 799999999999998887776554
No 122
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.42 E-value=1.7e-13 Score=114.97 Aligned_cols=87 Identities=22% Similarity=0.150 Sum_probs=67.8
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCC------cchhhhcc--
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF------DHVPIACK-- 169 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~------~~~~~~~~-- 169 (193)
.+||+++|++|||||||+ ++.+..+. ...+.+..+ .+...++. .+.+++||++|++.+. .+...|+.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~--~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 79 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVE--RKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQ 79 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCS--CEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEE--EEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcC
Confidence 579999999999999999 99987654 444533333 34555565 6789999999999886 45567776
Q ss_pred CCcEEEEEEECCChhhHHHH
Q 029430 170 DAVAILFMFDLTSRCTLNRF 189 (193)
Q Consensus 170 ~a~~illvyDit~~~Sf~~l 189 (193)
.+|++|+|||.++.+++..+
T Consensus 80 ~~d~vi~V~D~t~~e~~~~~ 99 (272)
T 3b1v_A 80 RADSILNVVDATNLERNLYL 99 (272)
T ss_dssp CCSEEEEEEEGGGHHHHHHH
T ss_pred CCCEEEEEecCCchHhHHHH
Confidence 69999999999998776554
No 123
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.41 E-value=1.1e-12 Score=108.98 Aligned_cols=84 Identities=17% Similarity=0.126 Sum_probs=72.2
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCc------chhhhc--c
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD------HVPIAC--K 169 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~------~~~~~~--~ 169 (193)
.+||+++|++|||||||+ ++.+..+. ...++++.+.....+.+++ ..+.+||++|++.+.. +...|+ .
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 80 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE--KEFLVVDLPGIYSLTAHSIDELIARNFILDG 80 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETT--EEEEEEECCCCSCCCSSCHHHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECC--ceEEEEeCCCccccccCCHHHHHHHHhhhcc
Confidence 589999999999999999 99998887 6777778888777788877 4589999999999877 566777 6
Q ss_pred CCcEEEEEEECCChhh
Q 029430 170 DAVAILFMFDLTSRCT 185 (193)
Q Consensus 170 ~a~~illvyDit~~~S 185 (193)
++|++|+|+|.++.+.
T Consensus 81 ~~d~vi~v~D~~~~~~ 96 (271)
T 3k53_A 81 NADVIVDIVDSTCLMR 96 (271)
T ss_dssp CCSEEEEEEEGGGHHH
T ss_pred CCcEEEEEecCCcchh
Confidence 8999999999999654
No 124
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.38 E-value=5.2e-13 Score=118.51 Aligned_cols=89 Identities=17% Similarity=0.220 Sum_probs=62.8
Q ss_pred EEEEECCCCCChhhHH-hhhcCccc--cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCC---------Ccchhhhcc
Q 029430 102 KISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS---------FDHVPIACK 169 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~~~f~--~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~---------~~~~~~~~~ 169 (193)
||+++|.+|||||||+ +++++++. ...+.+..+.....+.+++. .+++|||+|++.. ......+++
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMIR 80 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHHH
Confidence 7999999999999999 99988754 45555556777778888885 5789999998863 234567899
Q ss_pred CCcEEEEEEECCChhhHHH--HHhc
Q 029430 170 DAVAILFMFDLTSRCTLNR--FDHN 192 (193)
Q Consensus 170 ~a~~illvyDit~~~Sf~~--l~~W 192 (193)
++|++|+|||.++..++.+ +.+|
T Consensus 81 ~ad~il~V~D~~~~~~~~d~~i~~~ 105 (439)
T 1mky_A 81 EADLVLFVVDGKRGITKEDESLADF 105 (439)
T ss_dssp TCSEEEEEEETTTCCCHHHHHHHHH
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHH
Confidence 9999999999998655543 4444
No 125
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.38 E-value=4.3e-13 Score=120.83 Aligned_cols=86 Identities=16% Similarity=0.316 Sum_probs=52.7
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCccc--cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcch--------hhhc
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHV--------PIAC 168 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f~--~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~--------~~~~ 168 (193)
.+||+++|.+|||||||+ ++++.+.. ...+++..++....+.+++ +.+.+|||+|++++...+ ..++
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~~ 310 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMKM 310 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence 589999999999999999 99988643 5566666777778888888 679999999998876544 3378
Q ss_pred cCCcEEEEEEECCChhhHH
Q 029430 169 KDAVAILFMFDLTSRCTLN 187 (193)
Q Consensus 169 ~~a~~illvyDit~~~Sf~ 187 (193)
+.+|++|+|||.+++.+++
T Consensus 311 ~~aD~vl~VvD~s~~~s~~ 329 (476)
T 3gee_A 311 AEADLILYLLDLGTERLDD 329 (476)
T ss_dssp SSCSEEEEEEETTTCSSGG
T ss_pred ccCCEEEEEEECCCCcchh
Confidence 9999999999999998885
No 126
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.36 E-value=8.6e-13 Score=112.12 Aligned_cols=93 Identities=14% Similarity=0.127 Sum_probs=69.9
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCcccc--ccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCC----------cchh
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQER--SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF----------DHVP 165 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~~--~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~----------~~~~ 165 (193)
..-+|+++|.+|||||||+ ++++.++.. ..+.+..+.....+..+ ....+.+|||+|+.++. ....
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~ 87 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMVEIAK 87 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHHHHHH
Confidence 4679999999999999999 999998762 22222222222333333 14789999999998766 4556
Q ss_pred hhccCCcEEEEEEECCChhhHHHHHhc
Q 029430 166 IACKDAVAILFMFDLTSRCTLNRFDHN 192 (193)
Q Consensus 166 ~~~~~a~~illvyDit~~~Sf~~l~~W 192 (193)
.+++++|++|+|+|.++..++++...|
T Consensus 88 ~~l~~aD~il~VvD~~~~~~~~~~~~~ 114 (308)
T 3iev_A 88 QSLEEADVILFMIDATEGWRPRDEEIY 114 (308)
T ss_dssp HHHHHCSEEEEEEETTTBSCHHHHHHH
T ss_pred HHhhcCCEEEEEEeCCCCCCchhHHHH
Confidence 788999999999999999888877654
No 127
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.36 E-value=2.7e-12 Score=105.38 Aligned_cols=83 Identities=16% Similarity=0.091 Sum_probs=63.7
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcCc-cc-ccccc-ceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchh--------
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGNE-QE-RSLQM-AGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVP-------- 165 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~~-f~-~~~~t-~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~-------- 165 (193)
...+||+|+|.+|||||||+ ++++.. +. .+.++ +..+.....+..++ ..+.||||+|...+.....
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~~ 97 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQR 97 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHHH
Confidence 34689999999999999999 999887 54 44443 44555556666776 5789999999887643322
Q ss_pred ---hhccCCcEEEEEEECCC
Q 029430 166 ---IACKDAVAILFMFDLTS 182 (193)
Q Consensus 166 ---~~~~~a~~illvyDit~ 182 (193)
.+++.+|++|+|||+++
T Consensus 98 ~~~~~~~~~d~il~V~d~~~ 117 (260)
T 2xtp_A 98 CYLLSAPGPHVLLLVTQLGR 117 (260)
T ss_dssp HHHHHTTCCSEEEEEEETTC
T ss_pred HHHhcCCCCcEEEEEEeCCC
Confidence 26789999999999986
No 128
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.35 E-value=1.6e-12 Score=105.66 Aligned_cols=84 Identities=14% Similarity=0.137 Sum_probs=61.7
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcCccc-cccc--cceeeeEEEEEEECCeEEEEEEEeCCCCC-----------CCCc
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQ--MAGLNLINKTLMVQGARIAFSIWDVGGDS-----------RSFD 162 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~--t~g~~~~~~~i~v~~~~v~l~iwD~~G~e-----------~~~~ 162 (193)
...+||+|+|.+|||||||+ ++++..+. ...+ ++..++....+.+++ ..+.||||+|.. .+..
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~ 104 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEIIR 104 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHHHH
Confidence 34799999999999999999 99998886 4444 455566666677777 577899999954 3334
Q ss_pred chhhhccCCcEEEEEEECCCh
Q 029430 163 HVPIACKDAVAILFMFDLTSR 183 (193)
Q Consensus 163 ~~~~~~~~a~~illvyDit~~ 183 (193)
....++++++++|+|+|+++.
T Consensus 105 ~~~~~~~~~~~~l~v~d~~~~ 125 (239)
T 3lxx_A 105 CILLTSPGPHALLLVVPLGRY 125 (239)
T ss_dssp HHHHTTTCCSEEEEEEETTCC
T ss_pred HHHhcCCCCcEEEEEeeCCCC
Confidence 444566788999999998763
No 129
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.35 E-value=1.3e-12 Score=108.17 Aligned_cols=84 Identities=21% Similarity=0.256 Sum_probs=65.2
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccc--cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhcc------
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACK------ 169 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~--~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~------ 169 (193)
..+||+++|+.|+|||||+ +++++++. ...+....+.....+..++ ..+.||||+|++++....+.+++
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~l 112 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGFL 112 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHHH
Confidence 4799999999999999999 99998863 3333333444445566666 58999999999998877766664
Q ss_pred ---CCcEEEEEEECCChh
Q 029430 170 ---DAVAILFMFDLTSRC 184 (193)
Q Consensus 170 ---~a~~illvyDit~~~ 184 (193)
+++++|+|+|+++..
T Consensus 113 ~~~~~~~il~V~~~d~~~ 130 (262)
T 3def_A 113 VNRTIDVLLYVDRLDVYA 130 (262)
T ss_dssp TTCEECEEEEEEESSCSC
T ss_pred hcCCCCEEEEEEcCCCCC
Confidence 789999999998743
No 130
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.33 E-value=4.5e-12 Score=107.62 Aligned_cols=87 Identities=18% Similarity=0.232 Sum_probs=64.1
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcCccc--cccc-cceeeeEEEEEEECCeEEEEEEEeCCCCCCCC--------cchh
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQ-MAGLNLINKTLMVQGARIAFSIWDVGGDSRSF--------DHVP 165 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~~f~--~~~~-t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~--------~~~~ 165 (193)
....+|+++|.+|||||||+ ++++.++. ...+ |+. +.....+..+ ...+.+|||+|+++.. ....
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr-~~i~~i~~~~--~~~l~l~DTpG~~~~~~~l~~~~~~~~~ 81 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTR-KRLRGILTEG--RRQIVFVDTPGLHKPMDALGEFMDQEVY 81 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCC-SCEEEEEEET--TEEEEEEECCCCCCCCSHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCcee-EEEEEEEEeC--CcEEEEecCccccchhhHHHHHHHHHHH
Confidence 45779999999999999999 99998875 2333 332 2222223333 4789999999998743 3455
Q ss_pred hhccCCcEEEEEEECCChhhHH
Q 029430 166 IACKDAVAILFMFDLTSRCTLN 187 (193)
Q Consensus 166 ~~~~~a~~illvyDit~~~Sf~ 187 (193)
.+++++|++|+|||.+++.+..
T Consensus 82 ~~l~~ad~il~VvD~~~~~~~~ 103 (301)
T 1wf3_A 82 EALADVNAVVWVVDLRHPPTPE 103 (301)
T ss_dssp HHTSSCSEEEEEEETTSCCCHH
T ss_pred HHHhcCCEEEEEEECCCCCChH
Confidence 6789999999999999865443
No 131
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.32 E-value=3.4e-13 Score=119.60 Aligned_cols=89 Identities=16% Similarity=0.208 Sum_probs=66.7
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccc--cccccceeeeEEEEEEECCeEEEEEEEeCCCC----------CCCCcchh
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGD----------SRSFDHVP 165 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~--~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~----------e~~~~~~~ 165 (193)
..+||+++|++|||||||+ +++++++. ...+++..+.....+.+++. .++||||+|+ |.|..++.
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~~ 251 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLRA 251 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHHH
Confidence 4689999999999999999 99998874 55565666776777888885 4889999998 44544444
Q ss_pred -hhccCCcEEEEEEECCChhhHHHH
Q 029430 166 -IACKDAVAILFMFDLTSRCTLNRF 189 (193)
Q Consensus 166 -~~~~~a~~illvyDit~~~Sf~~l 189 (193)
.+++.+|++|+|||+++..++++.
T Consensus 252 ~~~~~~ad~~llv~D~~~~~s~~~~ 276 (436)
T 2hjg_A 252 LKAIDRSEVVAVVLDGEEGIIEQDK 276 (436)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHHH
T ss_pred HHHHHhCCEEEEEEcCCcCCcHHHH
Confidence 478899999999999999888875
No 132
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.31 E-value=2.6e-12 Score=114.20 Aligned_cols=93 Identities=14% Similarity=0.078 Sum_probs=66.2
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcCccc--cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcch-------hhh
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHV-------PIA 167 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~~f~--~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~-------~~~ 167 (193)
...+||+++|+.++|||||+ ++++..+. ...+.+..+...+.+.+++. ..+.+|||+|++.+..+. ..+
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~~~~ 110 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKARRV 110 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHHHHH
Confidence 34789999999999999999 99999874 44444455666677777764 278999999999887663 347
Q ss_pred ccCCcEEEEEEECCChhhHHHHHh
Q 029430 168 CKDAVAILFMFDLTSRCTLNRFDH 191 (193)
Q Consensus 168 ~~~a~~illvyDit~~~Sf~~l~~ 191 (193)
++.+|++|+|||.+..+..+.+.+
T Consensus 111 l~~aD~vllVvD~~~~~~~~~~l~ 134 (423)
T 3qq5_A 111 FYRADCGILVTDSAPTPYEDDVVN 134 (423)
T ss_dssp HTSCSEEEEECSSSCCHHHHHHHH
T ss_pred HhcCCEEEEEEeCCChHHHHHHHH
Confidence 899999999999966655555443
No 133
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.29 E-value=2.1e-12 Score=111.83 Aligned_cols=61 Identities=20% Similarity=0.253 Sum_probs=50.5
Q ss_pred ccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEEEECC----------ChhhHHHHHhcC
Q 029430 129 QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLT----------SRCTLNRFDHNQ 193 (193)
Q Consensus 129 ~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illvyDit----------~~~Sf~~l~~W~ 193 (193)
+|+|++. ..+.++ .+.++|||++||+.++.+|..||++++++|+|||++ +.++|++..+|+
T Consensus 147 ~TiGi~~--~~~~~~--~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~ 217 (340)
T 4fid_A 147 KTTGIHE--YDFVVK--DIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVF 217 (340)
T ss_dssp CCCSCEE--EEEESS--SCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHH
T ss_pred ceeeeEE--EEEEee--eeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHH
Confidence 3556544 344444 489999999999999999999999999999999999 788998887763
No 134
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.28 E-value=5.3e-12 Score=103.91 Aligned_cols=82 Identities=12% Similarity=0.102 Sum_probs=57.3
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccc-cccccce--eeeEEEEEEECCeEEEEEEEeCCCC--------CCCCcchhh
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAG--LNLINKTLMVQGARIAFSIWDVGGD--------SRSFDHVPI 166 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g--~~~~~~~i~v~~~~v~l~iwD~~G~--------e~~~~~~~~ 166 (193)
..+||+|+|.+|||||||+ ++++..+. ...++.+ .+.....+..++ ..+.||||+|. +++......
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~~i~~ 97 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK--CHVEVVDTPDIFSSQVSKTDPGCEERGH 97 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT--EEEEEEECCSCSSTTHHHHSTTSHHHHH
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC--cEEEEEECCCCCCCCCCcHHHHHHHHHH
Confidence 3799999999999999999 99988865 3333322 233334555565 67889999997 444333333
Q ss_pred hc----cCCcEEEEEEECCC
Q 029430 167 AC----KDAVAILFMFDLTS 182 (193)
Q Consensus 167 ~~----~~a~~illvyDit~ 182 (193)
++ +++|++|+|+|+++
T Consensus 98 ~~~~~~~~~d~il~V~d~~~ 117 (247)
T 3lxw_A 98 CYLLSAPGPHALLLVTQLGR 117 (247)
T ss_dssp HHHHHTTCCSEEEEEEETTB
T ss_pred HHHhcCCCCCEEEEEEeCCC
Confidence 33 89999999999985
No 135
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.28 E-value=2.3e-12 Score=106.99 Aligned_cols=84 Identities=19% Similarity=0.143 Sum_probs=59.6
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccccccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhh---------hc
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPI---------AC 168 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~---------~~ 168 (193)
..+||+++|++|+|||||+ +++++.+....++.+.......+.++...+.+.||||+|++++..+... ..
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~ 117 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLD 117 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhc
Confidence 3799999999999999999 9998886422222222222233333333478999999999887654432 13
Q ss_pred cCCcEEEEEEECCC
Q 029430 169 KDAVAILFMFDLTS 182 (193)
Q Consensus 169 ~~a~~illvyDit~ 182 (193)
+.+|++|+|||++.
T Consensus 118 ~~~d~il~v~~~d~ 131 (270)
T 1h65_A 118 KTIDVLLYVDRLDA 131 (270)
T ss_dssp CEECEEEEEEESSC
T ss_pred CCCCEEEEEEeCCC
Confidence 47899999999976
No 136
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.28 E-value=2e-12 Score=116.66 Aligned_cols=89 Identities=19% Similarity=0.400 Sum_probs=72.7
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCccc--cccccceeeeEEEEEEECCeEEEEEEEeCCCCC-CCCc--------chhhh
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS-RSFD--------HVPIA 167 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f~--~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e-~~~~--------~~~~~ 167 (193)
.+||+++|.+|||||||+ ++.+.++. ...+.+..++....+.+++ ..+.||||+|++ ++.. ....+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 489999999999999999 99988753 5556666677778888887 568999999998 6653 23457
Q ss_pred ccCCcEEEEEEECCChhhHHHHH
Q 029430 168 CKDAVAILFMFDLTSRCTLNRFD 190 (193)
Q Consensus 168 ~~~a~~illvyDit~~~Sf~~l~ 190 (193)
++.+|++|+|||++++.++++.+
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~~ 343 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDRK 343 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHHH
T ss_pred hhcccEEEEEecCCCCCCHHHHH
Confidence 89999999999999998887643
No 137
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.26 E-value=8.5e-12 Score=107.49 Aligned_cols=60 Identities=17% Similarity=0.278 Sum_probs=48.3
Q ss_pred ccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEEEECC----------ChhhHHHHHhc
Q 029430 129 QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLT----------SRCTLNRFDHN 192 (193)
Q Consensus 129 ~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illvyDit----------~~~Sf~~l~~W 192 (193)
+|+|+.. ..+.+++ +.++|||++||+.++.+|..||++++++|+|||++ +.++|++..+|
T Consensus 153 ~TiGi~~--~~~~~~~--v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~ 222 (327)
T 3ohm_A 153 PTTGIIE--YPFDLQS--VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKAL 222 (327)
T ss_dssp CCCSEEE--EEEEETT--EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHH
T ss_pred ceeeEEE--EEEEeec--eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHH
Confidence 3455433 4455555 89999999999999999999999999999999665 67788877666
No 138
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.25 E-value=1.1e-12 Score=104.37 Aligned_cols=86 Identities=14% Similarity=0.142 Sum_probs=59.6
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEEC-CeEEEEEEEeCCCCC----------CCCcchh
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQ-GARIAFSIWDVGGDS----------RSFDHVP 165 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~-~~~v~l~iwD~~G~e----------~~~~~~~ 165 (193)
...||+++|+.|||||||+ +++++.+. ...++.|.........++ .....+.||||+|.. .+..+..
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 107 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLS 107 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHH
Confidence 3689999999999999999 99998742 222222222222333343 344788999999943 3355566
Q ss_pred hhccC---CcEEEEEEECCChh
Q 029430 166 IACKD---AVAILFMFDLTSRC 184 (193)
Q Consensus 166 ~~~~~---a~~illvyDit~~~ 184 (193)
.|++. +|++|+|+|.++..
T Consensus 108 ~~~~~~~~~d~vi~v~d~~~~~ 129 (223)
T 4dhe_A 108 SYLQTRPQLCGMILMMDARRPL 129 (223)
T ss_dssp HHHHHCTTEEEEEEEEETTSCC
T ss_pred HHHhcCcCcCEEEEEEeCCCCC
Confidence 67666 67899999999753
No 139
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.24 E-value=1.7e-12 Score=115.11 Aligned_cols=87 Identities=20% Similarity=0.303 Sum_probs=57.8
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCcccccccccee--eeEEEEEEECCeEEEEEEEeCCCCC--------CCCcchhhhc
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGL--NLINKTLMVQGARIAFSIWDVGGDS--------RSFDHVPIAC 168 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f~~~~~t~g~--~~~~~~i~v~~~~v~l~iwD~~G~e--------~~~~~~~~~~ 168 (193)
..||+++|.+|||||||+ ++++..+....++.|. +.....+.+++ ..+.+|||+|++ ++......++
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 80 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN--YDFNLIDTGGIDIGDEPFLAQIRQQAEIAM 80 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCS--SCCEEEC---------CHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECC--ceEEEEECCCCCCcchhHHHHHHHHHHHHH
Confidence 369999999999999999 9998877644444444 33333444444 578999999997 4556667789
Q ss_pred cCCcEEEEEEECCChhhHHH
Q 029430 169 KDAVAILFMFDLTSRCTLNR 188 (193)
Q Consensus 169 ~~a~~illvyDit~~~Sf~~ 188 (193)
+.+|++|+|+|.++..++.+
T Consensus 81 ~~ad~il~vvD~~~~~~~~d 100 (436)
T 2hjg_A 81 DEADVIIFMVNGREGVTAAD 100 (436)
T ss_dssp HHCSEEEEEEETTTCSCHHH
T ss_pred HhCCEEEEEEeCCCCCCHHH
Confidence 99999999999998766554
No 140
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.22 E-value=7.5e-12 Score=111.08 Aligned_cols=92 Identities=14% Similarity=0.191 Sum_probs=67.5
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcC--ccc-cc-----------------------------cccceeeeEEEEEEECCe
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGN--EQE-RS-----------------------------LQMAGLNLINKTLMVQGA 145 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~--~f~-~~-----------------------------~~t~g~~~~~~~i~v~~~ 145 (193)
..+||+++|..++|||||+ +++.+ .+. .+ ...+..+..... ++..
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~--~~~~ 82 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMR--FETK 82 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CE--EECS
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEE--EecC
Confidence 4689999999999999999 99864 332 11 111112222222 3334
Q ss_pred EEEEEEEeCCCCCCCCcchhhhccCCcEEEEEEECCChhhHHHHHhcC
Q 029430 146 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNRFDHNQ 193 (193)
Q Consensus 146 ~v~l~iwD~~G~e~~~~~~~~~~~~a~~illvyDit~~~Sf~~l~~W~ 193 (193)
...+.||||+|+++|......+++.+|++|+|+|.++ .+|+++.+|.
T Consensus 83 ~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~ 129 (435)
T 1jny_A 83 KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVE 129 (435)
T ss_dssp SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTT
T ss_pred CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-Cccccccccc
Confidence 4789999999999999888889999999999999999 8999877663
No 141
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.21 E-value=4.7e-12 Score=113.65 Aligned_cols=87 Identities=23% Similarity=0.405 Sum_probs=61.9
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCccc--cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchh--------hhc
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVP--------IAC 168 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f~--~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~--------~~~ 168 (193)
.+||+++|.+|||||||+ ++++.++. ...+++..++....+.+++ ..+.+|||+|..++..... .++
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~~ 301 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQAA 301 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CCC
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhhh
Confidence 589999999999999999 99987654 4556666677667788888 5678999999877654433 367
Q ss_pred cCCcEEEEEEECCChhhHHH
Q 029430 169 KDAVAILFMFDLTSRCTLNR 188 (193)
Q Consensus 169 ~~a~~illvyDit~~~Sf~~ 188 (193)
+.+|++|+|||.+++.+++.
T Consensus 302 ~~aD~vl~VvD~s~~~~~~~ 321 (462)
T 3geh_A 302 NTADLVLLTIDAATGWTTGD 321 (462)
T ss_dssp CSCSEEEEEEETTTCSCHHH
T ss_pred hcCCEEEEEeccCCCCCHHH
Confidence 89999999999999877654
No 142
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.19 E-value=9.8e-12 Score=110.79 Aligned_cols=86 Identities=16% Similarity=0.257 Sum_probs=66.4
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcCccc--cccccceeeeEEEEEEECCeEEEEEEEeCCC----------CCCCCcch
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGG----------DSRSFDHV 164 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~~f~--~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G----------~e~~~~~~ 164 (193)
...+||+++|++|||||||+ ++++.+.. ...+++..+.....+..++. .++||||+| +|+|..++
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~ 270 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR 270 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHHH
Confidence 34789999999999999999 99977633 56666667777778888885 788999999 77777776
Q ss_pred hh-hccCCcEEEEEEECCChhh
Q 029430 165 PI-ACKDAVAILFMFDLTSRCT 185 (193)
Q Consensus 165 ~~-~~~~a~~illvyDit~~~S 185 (193)
.. +++.+|++|+|+|.++..+
T Consensus 271 ~~~~~~~ad~~llviD~~~~~~ 292 (456)
T 4dcu_A 271 ALKAIDRSEVVAVVLDGEEGII 292 (456)
T ss_dssp HHHHHHHCSEEEEEEETTTCCC
T ss_pred HHHHHhhCCEEEEEEeCCCCcC
Confidence 64 7899999999999998543
No 143
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.18 E-value=3.3e-12 Score=113.83 Aligned_cols=84 Identities=18% Similarity=0.262 Sum_probs=61.4
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCccccccccceeeeEEEEEEECCeEEEEEEEeCCC--------CCCCCcchhhhccC
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG--------DSRSFDHVPIACKD 170 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f~~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G--------~e~~~~~~~~~~~~ 170 (193)
..||+++|.+|||||||+ +++++++....++.|.........++.....++||||+| ++++......+++.
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ 102 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE 102 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhh
Confidence 569999999999999999 999988764444555554444455555557899999999 66677778889999
Q ss_pred CcEEEEEEECCCh
Q 029430 171 AVAILFMFDLTSR 183 (193)
Q Consensus 171 a~~illvyDit~~ 183 (193)
+|++|+|+|..+.
T Consensus 103 ad~il~VvD~~~~ 115 (456)
T 4dcu_A 103 ADVIIFMVNGREG 115 (456)
T ss_dssp CSEEEEEEESSSC
T ss_pred CCEEEEEEeCCCC
Confidence 9999999998773
No 144
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.16 E-value=9.1e-12 Score=108.22 Aligned_cols=91 Identities=10% Similarity=0.223 Sum_probs=57.1
Q ss_pred eeeEEEEECCCCCChhhHH-hhhc-Cccc-ccc--------ccceeeeEEEEEEECCeEEEEEEEeCCCC-------CCC
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVG-NEQE-RSL--------QMAGLNLINKTLMVQGARIAFSIWDVGGD-------SRS 160 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~-~~f~-~~~--------~t~g~~~~~~~i~v~~~~v~l~iwD~~G~-------e~~ 160 (193)
..+||+++|++|+|||||+ ++.+ +.|. .+. +|++.++....+..++..+.+++|||+|+ +.+
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~ 115 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 115 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence 4789999999999999999 8544 4454 332 56777766566666777889999999999 788
Q ss_pred Ccchh-------hhccCCcEE-----------EEEEECCC-hhhHHHH
Q 029430 161 FDHVP-------IACKDAVAI-----------LFMFDLTS-RCTLNRF 189 (193)
Q Consensus 161 ~~~~~-------~~~~~a~~i-----------llvyDit~-~~Sf~~l 189 (193)
..+.. .|++.++++ +++|++++ ..+|..+
T Consensus 116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~ 163 (361)
T 2qag_A 116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPL 163 (361)
T ss_dssp CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchh
Confidence 88887 777766554 58888887 5555544
No 145
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.16 E-value=1.2e-10 Score=100.69 Aligned_cols=92 Identities=15% Similarity=0.162 Sum_probs=65.3
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCc---------chhhh
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD---------HVPIA 167 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~---------~~~~~ 167 (193)
..++++++|.+|||||||+ ++.+..+. ...+....+.....+..++ ..+.+|||+|...... ....+
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 243 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--FRYQIIDTPGLLDRPISERNEIEKQAILAL 243 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--EEEEEEECTTTSSSCSTTSCHHHHHHHHGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--ceEEEEeCCCccccchhhhhHHHHHHHHHH
Confidence 3579999999999999999 99988765 3333222233333444444 6789999999876431 11234
Q ss_pred ccCCcEEEEEEECCChh--hHHHHHhc
Q 029430 168 CKDAVAILFMFDLTSRC--TLNRFDHN 192 (193)
Q Consensus 168 ~~~a~~illvyDit~~~--Sf~~l~~W 192 (193)
...+|++|+|+|+++.. ++++..+|
T Consensus 244 ~~~ad~illV~D~s~~~~~~~~~~~~~ 270 (357)
T 2e87_A 244 RYLGNLIIYIFDPSEHCGFPLEEQIHL 270 (357)
T ss_dssp GGTCSEEEEEECTTCTTSSCHHHHHHH
T ss_pred HhcCCEEEEEEeCCccccCCHHHHHHH
Confidence 55799999999999987 77777666
No 146
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.15 E-value=1.2e-11 Score=111.00 Aligned_cols=88 Identities=16% Similarity=0.203 Sum_probs=63.3
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCc--cc-cc---------------------------cccceeeeEEEEEEECCeEE
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNE--QE-RS---------------------------LQMAGLNLINKTLMVQGARI 147 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~--f~-~~---------------------------~~t~g~~~~~~~i~v~~~~v 147 (193)
..+||+++|..++|||||+ +|+++. +. .+ ....|..+......++....
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 111 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA 111 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCc
Confidence 4799999999999999999 997651 11 10 01113333223334444557
Q ss_pred EEEEEeCCCCCCCCcchhhhccCCcEEEEEEECCChhhH
Q 029430 148 AFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTL 186 (193)
Q Consensus 148 ~l~iwD~~G~e~~~~~~~~~~~~a~~illvyDit~~~Sf 186 (193)
.+.||||+|+++|......+++.+|++|+|+|.++.+++
T Consensus 112 ~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~ 150 (483)
T 3p26_A 112 NFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFE 150 (483)
T ss_dssp EEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC----
T ss_pred eEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccc
Confidence 899999999999999999999999999999999997554
No 147
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.14 E-value=2.6e-12 Score=117.33 Aligned_cols=89 Identities=9% Similarity=0.069 Sum_probs=72.3
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEE
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illv 177 (193)
..||+++|..++|||||+ +|.+..+. .+.+++..++....+.+++ ...+.+|||+|++.|..++..+++.+|++|+|
T Consensus 4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~-g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILV 82 (537)
T 3izy_P 4 SPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPS-GEKITFLDTPGHAAFSAMRARGTQVTDIVILV 82 (537)
T ss_dssp CCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSC-SSCCBCEECSSSCCTTTSBBSSSBSBSSCEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCC-CCEEEEEECCChHHHHHHHHHHHccCCEEEEE
Confidence 568999999999999999 99998887 6666666666555555522 23688999999999999999999999999999
Q ss_pred EECCChhhHHHH
Q 029430 178 FDLTSRCTLNRF 189 (193)
Q Consensus 178 yDit~~~Sf~~l 189 (193)
||.++....+..
T Consensus 83 VDa~dg~~~qt~ 94 (537)
T 3izy_P 83 VAADDGVMKQTV 94 (537)
T ss_dssp CBSSSCCCHHHH
T ss_pred EECCCCccHHHH
Confidence 999985444443
No 148
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.14 E-value=1.5e-10 Score=103.03 Aligned_cols=83 Identities=10% Similarity=0.120 Sum_probs=64.8
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCc-------------------------------cc-cccccceeeeEEEEEEECCe
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNE-------------------------------QE-RSLQMAGLNLINKTLMVQGA 145 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~-------------------------------f~-~~~~t~g~~~~~~~i~v~~~ 145 (193)
..++|+++|..++|||||+ +++... +. +..+.+..+.....+..++
T Consensus 16 ~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~- 94 (439)
T 3j2k_7 16 EHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK- 94 (439)
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC-
Confidence 4789999999999999999 995431 11 1223344555545555555
Q ss_pred EEEEEEEeCCCCCCCCcchhhhccCCcEEEEEEECCCh
Q 029430 146 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR 183 (193)
Q Consensus 146 ~v~l~iwD~~G~e~~~~~~~~~~~~a~~illvyDit~~ 183 (193)
..+.||||+|+++|......+++.+|++|+|+|.++.
T Consensus 95 -~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g 131 (439)
T 3j2k_7 95 -KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKG 131 (439)
T ss_pred -eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCC
Confidence 6899999999999998888899999999999999984
No 149
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.13 E-value=2.5e-11 Score=95.61 Aligned_cols=86 Identities=12% Similarity=0.166 Sum_probs=54.3
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCC----------Ccchhh
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS----------FDHVPI 166 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~----------~~~~~~ 166 (193)
...+|+++|.+|+|||||+ ++.+..+. .+.++.|.......+.+++ .+.+||++|.... ......
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 101 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALGE 101 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHHH
Confidence 3579999999999999999 99888765 5566777655444455544 5789999998532 122233
Q ss_pred hc---cCCcEEEEEEECCChhhHH
Q 029430 167 AC---KDAVAILFMFDLTSRCTLN 187 (193)
Q Consensus 167 ~~---~~a~~illvyDit~~~Sf~ 187 (193)
++ ..++++++++|+++..++.
T Consensus 102 ~~~~~~~~~~~~~v~d~~~~~~~~ 125 (210)
T 1pui_A 102 YLEKRQSLQGLVVLMDIRHPLKDL 125 (210)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHH
T ss_pred HHHhhhcccEEEEEEECCCCCchh
Confidence 44 5789999999999876654
No 150
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.13 E-value=4.1e-11 Score=103.68 Aligned_cols=88 Identities=14% Similarity=0.187 Sum_probs=66.6
Q ss_pred EEEEECCCCCChhhHH-hhhcCccc-cccc--cceeeeEEEEEEECCeEEEEEEEeCCCC----CCCCcchhhhccC---
Q 029430 102 KISLLGDCQIGKTSFV-KYVGNEQE-RSLQ--MAGLNLINKTLMVQGARIAFSIWDVGGD----SRSFDHVPIACKD--- 170 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~~~f~-~~~~--t~g~~~~~~~i~v~~~~v~l~iwD~~G~----e~~~~~~~~~~~~--- 170 (193)
+|+|+|.++||||||+ ++.+.++. ..++ |+..++ ..+.+++ ...+.|||++|. +.+..+...|++.
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~--g~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~ 236 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNL--GMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIER 236 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCE--EEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHH
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceE--EEEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHHh
Confidence 5889999999999999 99988754 3333 333333 3455554 247899999994 4566677777665
Q ss_pred CcEEEEEEECCC---hhhHHHHHhc
Q 029430 171 AVAILFMFDLTS---RCTLNRFDHN 192 (193)
Q Consensus 171 a~~illvyDit~---~~Sf~~l~~W 192 (193)
++++|+|+|+++ +++|+++..|
T Consensus 237 ~d~ll~VvD~s~~~~~~~~~~~~~~ 261 (342)
T 1lnz_A 237 TRVIVHVIDMSGLEGRDPYDDYLTI 261 (342)
T ss_dssp CCEEEEEEESSCSSCCCHHHHHHHH
T ss_pred ccEEEEEEECCcccccChHHHHHHH
Confidence 999999999999 8899888766
No 151
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.12 E-value=8.8e-11 Score=97.67 Aligned_cols=61 Identities=11% Similarity=0.232 Sum_probs=44.0
Q ss_pred eeeEEEEECCCCCChhhHH-hhhc-Cccc-cc-------cccceeeeEEEEEEECCeEEEEEEEeCCCCCC
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVG-NEQE-RS-------LQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 159 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~-~~f~-~~-------~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~ 159 (193)
..+||+++|.+|+|||||+ ++.+ +.+. .+ .+|++.+.....+..++..+.+.||||+|...
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d 77 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGD 77 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSC
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccc
Confidence 4799999999999999999 8554 4444 44 67888888777777778888999999999843
No 152
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.11 E-value=1.5e-10 Score=101.50 Aligned_cols=95 Identities=13% Similarity=0.073 Sum_probs=66.8
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcCcccc---cc-ccceee------------eEEEEEEE---CCeEEEEEEEeCCCC
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQER---SL-QMAGLN------------LINKTLMV---QGARIAFSIWDVGGD 157 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~~f~~---~~-~t~g~~------------~~~~~i~v---~~~~v~l~iwD~~G~ 157 (193)
...+||+++|..++|||||+ ++.+..... +. .+.+.. .......+ ......+.+|||+|+
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh 85 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGH 85 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCc
Confidence 34789999999999999999 998754331 11 111100 00000000 122378999999999
Q ss_pred CCCCcchhhhccCCcEEEEEEECCChhhHHHHHhc
Q 029430 158 SRSFDHVPIACKDAVAILFMFDLTSRCTLNRFDHN 192 (193)
Q Consensus 158 e~~~~~~~~~~~~a~~illvyDit~~~Sf~~l~~W 192 (193)
++|......++..+|++|+|+|.++..++....+|
T Consensus 86 ~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~ 120 (403)
T 3sjy_A 86 EVLMATMLSGAALMDGAILVVAANEPFPQPQTREH 120 (403)
T ss_dssp GGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHH
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHH
Confidence 99999999999999999999999987766665554
No 153
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.11 E-value=5.6e-11 Score=106.50 Aligned_cols=82 Identities=11% Similarity=0.130 Sum_probs=50.1
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhc--Ccccc--------------------------------ccccceeeeEEEEEEE
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVG--NEQER--------------------------------SLQMAGLNLINKTLMV 142 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~--~~f~~--------------------------------~~~t~g~~~~~~~i~v 142 (193)
...+||+++|..++|||||+ +++. +.+.+ ...|++..+ ..+.+
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~--~~~~~ 118 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGR--AYFET 118 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------C--CEEEC
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeee--EEEec
Confidence 35789999999999999999 9874 32210 112333222 23444
Q ss_pred CCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEEEECCCh
Q 029430 143 QGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR 183 (193)
Q Consensus 143 ~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illvyDit~~ 183 (193)
++ ..+.||||+|+++|......++..+|++|+|+|.++.
T Consensus 119 ~~--~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g 157 (467)
T 1r5b_A 119 EH--RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRG 157 (467)
T ss_dssp SS--EEEEECCCCC-----------TTSCSEEEEEEECSTT
T ss_pred CC--eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcC
Confidence 44 6789999999999998888899999999999999985
No 154
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.11 E-value=1.1e-10 Score=103.61 Aligned_cols=88 Identities=15% Similarity=0.285 Sum_probs=61.7
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccc--cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcc-----------h
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH-----------V 164 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~--~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~-----------~ 164 (193)
..+||+++|++|||||||+ ++++..+. ...+.+..+.....+.++|. .+.+|||+|++++... .
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~~ 256 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNYR 256 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHHH
Confidence 3589999999999999999 99988763 44455555665677888885 5789999998543322 1
Q ss_pred -hhhccCCcEEEEEEECCChhhHHH
Q 029430 165 -PIACKDAVAILFMFDLTSRCTLNR 188 (193)
Q Consensus 165 -~~~~~~a~~illvyDit~~~Sf~~ 188 (193)
..+++.++++++|+|.++..++++
T Consensus 257 ~~~~i~~ad~vllv~d~~~~~~~~~ 281 (439)
T 1mky_A 257 VVDSIEKADVVVIVLDATQGITRQD 281 (439)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHH
T ss_pred HHHHHhhCCEEEEEEeCCCCCCHHH
Confidence 246788999999999998766654
No 155
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.11 E-value=2.9e-11 Score=111.55 Aligned_cols=93 Identities=16% Similarity=0.135 Sum_probs=69.2
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccccccc-----cceeeeEEEEE------------EECCeEEEEEEEeCCCCCCC
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQ-----MAGLNLINKTL------------MVQGARIAFSIWDVGGDSRS 160 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~~~~~-----t~g~~~~~~~i------------~v~~~~v~l~iwD~~G~e~~ 160 (193)
...+|+++|..++|||||+ ++.+..+..+.+ ++|..+..+.. .++.....++||||+|++.|
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 3579999999999999999 998776553332 44443321110 00011235999999999999
Q ss_pred CcchhhhccCCcEEEEEEECCC---hhhHHHHHh
Q 029430 161 FDHVPIACKDAVAILFMFDLTS---RCTLNRFDH 191 (193)
Q Consensus 161 ~~~~~~~~~~a~~illvyDit~---~~Sf~~l~~ 191 (193)
..++..+++.+|++|+|||+++ ++|++.+..
T Consensus 84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~ 117 (594)
T 1g7s_A 84 TTLRKRGGALADLAILIVDINEGFKPQTQEALNI 117 (594)
T ss_dssp TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH
T ss_pred HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH
Confidence 9999999999999999999999 889887753
No 156
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.11 E-value=5.4e-11 Score=104.38 Aligned_cols=88 Identities=11% Similarity=0.154 Sum_probs=66.4
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcC--------ccccc--------cccceeeeEEEEEEECCeEEEEEEEeCCCCCCCC
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGN--------EQERS--------LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF 161 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~--------~f~~~--------~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~ 161 (193)
..+||+++|..++|||||+ ++.+. .|..+ ..+.|..+....+.++.....+.||||+|+++|.
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f~ 89 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYI 89 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGH
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHHH
Confidence 4799999999999999999 99873 22211 1133443333444555555788999999999998
Q ss_pred cchhhhccCCcEEEEEEECCChhhH
Q 029430 162 DHVPIACKDAVAILFMFDLTSRCTL 186 (193)
Q Consensus 162 ~~~~~~~~~a~~illvyDit~~~Sf 186 (193)
.....+++.+|++|+|+|.++....
T Consensus 90 ~~~~~~~~~aD~~ilVvda~~g~~~ 114 (405)
T 2c78_A 90 KNMITGAAQMDGAILVVSAADGPMP 114 (405)
T ss_dssp HHHHHHHTTCSSEEEEEETTTCCCH
T ss_pred HHHHHHHHHCCEEEEEEECCCCCcH
Confidence 8888899999999999999986443
No 157
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.10 E-value=6.1e-11 Score=104.57 Aligned_cols=91 Identities=13% Similarity=0.215 Sum_probs=52.2
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCe---------------EEEEEEEeCCCCCCCCc
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGA---------------RIAFSIWDVGGDSRSFD 162 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~---------------~v~l~iwD~~G~e~~~~ 162 (193)
.+|+.++|.+|||||||+ ++.+..+. ...|....+.....+.+++. ...+++||++|..++..
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~as 101 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAH 101 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC------
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccccc
Confidence 579999999999999999 99988765 44554444444456666653 23599999999987543
Q ss_pred -------chhhhccCCcEEEEEEECCChhhHHHHH
Q 029430 163 -------HVPIACKDAVAILFMFDLTSRCTLNRFD 190 (193)
Q Consensus 163 -------~~~~~~~~a~~illvyDit~~~Sf~~l~ 190 (193)
.+..+++.+|++++|+|+++.++|.++.
T Consensus 102 ~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i~~v~ 136 (396)
T 2ohf_A 102 NGQGLGNAFLSHISACDGIFHLTRAFEDDDITHVE 136 (396)
T ss_dssp -----CCHHHHHHHTSSSEEEEEEC----------
T ss_pred hhhHHHHHHHHHHHhcCeEEEEEecCCCcchhhhc
Confidence 4556789999999999999988776543
No 158
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.10 E-value=1.6e-10 Score=101.47 Aligned_cols=94 Identities=13% Similarity=0.088 Sum_probs=67.6
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcC---ccc-cccc--cceeeeEEEEEEE-------------C--C----eEEEEEEE
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGN---EQE-RSLQ--MAGLNLINKTLMV-------------Q--G----ARIAFSIW 152 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~---~f~-~~~~--t~g~~~~~~~i~v-------------~--~----~~v~l~iw 152 (193)
..+||+++|..++|||||+ ++.+. .+. +..+ |++..+....+.. + + ....+.+|
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 86 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV 86 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence 4689999999999999999 98843 343 4444 6666665444432 1 2 13789999
Q ss_pred eCCCCCCCCcchhhhccCCcEEEEEEECC----ChhhHHHHHhc
Q 029430 153 DVGGDSRSFDHVPIACKDAVAILFMFDLT----SRCTLNRFDHN 192 (193)
Q Consensus 153 D~~G~e~~~~~~~~~~~~a~~illvyDit----~~~Sf~~l~~W 192 (193)
|++|+++|.......+..+|++|+|+|.+ .+++++.+..|
T Consensus 87 DtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~ 130 (408)
T 1s0u_A 87 DSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMAL 130 (408)
T ss_dssp ECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHH
T ss_pred ECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHH
Confidence 99999988766666677889999999999 56788776543
No 159
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.10 E-value=8.9e-11 Score=105.66 Aligned_cols=91 Identities=12% Similarity=0.124 Sum_probs=67.0
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcCc-------cc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhc
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGNE-------QE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIAC 168 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~~-------f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~ 168 (193)
...++|+++|..++|||||+ ++.+.. +. +..+.+..+.....+.+++ ..+.+|||+|+++|......++
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~~ 94 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAA 94 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHHH
Confidence 45799999999999999999 998776 22 2333222232223455566 7899999999999988888899
Q ss_pred cCCcEEEEEEECCC---hhhHHHHH
Q 029430 169 KDAVAILFMFDLTS---RCTLNRFD 190 (193)
Q Consensus 169 ~~a~~illvyDit~---~~Sf~~l~ 190 (193)
..+|++|+|+|.++ +++++.+.
T Consensus 95 ~~aD~~ilVvda~~g~~~qt~e~l~ 119 (482)
T 1wb1_A 95 DIIDLALIVVDAKEGPKTQTGEHML 119 (482)
T ss_dssp TSCCEEEEEEETTTCSCHHHHHHHH
T ss_pred hhCCEEEEEEecCCCccHHHHHHHH
Confidence 99999999999998 77777653
No 160
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.09 E-value=9.4e-11 Score=102.11 Aligned_cols=90 Identities=18% Similarity=0.235 Sum_probs=60.9
Q ss_pred eeE-EEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCC---------CCcchhhh
Q 029430 100 SLK-ISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR---------SFDHVPIA 167 (193)
Q Consensus 100 ~~K-ivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~---------~~~~~~~~ 167 (193)
.++ |+++|.+|+|||||+ ++.+..+. ...+....+.....+.+++ ..+.+|||+|.-. +..... .
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl~-~ 254 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTLS-E 254 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHHH-G
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHHH-H
Confidence 455 999999999999999 99988775 3333333455667888888 4678999999632 222222 4
Q ss_pred ccCCcEEEEEEECCChh--hHHHHHhc
Q 029430 168 CKDAVAILFMFDLTSRC--TLNRFDHN 192 (193)
Q Consensus 168 ~~~a~~illvyDit~~~--Sf~~l~~W 192 (193)
+..+|++++|+|++++. +++.+..|
T Consensus 255 ~~~aD~il~VvD~s~~~~~~~~~~~~~ 281 (364)
T 2qtf_A 255 AKYSDALILVIDSTFSENLLIETLQSS 281 (364)
T ss_dssp GGGSSEEEEEEETTSCHHHHHHHHHHH
T ss_pred HHhCCEEEEEEECCCCcchHHHHHHHH
Confidence 78899999999999987 66555443
No 161
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.08 E-value=5.9e-11 Score=108.09 Aligned_cols=93 Identities=10% Similarity=0.150 Sum_probs=67.5
Q ss_pred eeEEEEECCCCCChhhHH-hhh------------------cCccccccc---cceeeeEEEEEEECCeEEEEEEEeCCCC
Q 029430 100 SLKISLLGDCQIGKTSFV-KYV------------------GNEQERSLQ---MAGLNLINKTLMVQGARIAFSIWDVGGD 157 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~------------------~~~f~~~~~---t~g~~~~~~~i~v~~~~v~l~iwD~~G~ 157 (193)
..+|+++|.+++|||||+ +++ ...+.++.+ ..|..+......++...+.++||||+|+
T Consensus 13 ~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG~ 92 (528)
T 3tr5_A 13 RRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPGH 92 (528)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCCS
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCCc
Confidence 579999999999999999 996 111211111 1233322223333333488999999999
Q ss_pred CCCCcchhhhccCCcEEEEEEECCChhhHHHHHhc
Q 029430 158 SRSFDHVPIACKDAVAILFMFDLTSRCTLNRFDHN 192 (193)
Q Consensus 158 e~~~~~~~~~~~~a~~illvyDit~~~Sf~~l~~W 192 (193)
++|......+++.+|++|+|+|.++..+++....|
T Consensus 93 ~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~ 127 (528)
T 3tr5_A 93 ADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLM 127 (528)
T ss_dssp TTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH
T ss_pred hhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999999997777666554
No 162
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.08 E-value=1.2e-10 Score=101.64 Aligned_cols=81 Identities=14% Similarity=0.134 Sum_probs=58.9
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCccc-cccc--cceeeeEEEEEEECCeE---------------EEEEEEeCCCCCCC
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQ--MAGLNLINKTLMVQGAR---------------IAFSIWDVGGDSRS 160 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~--t~g~~~~~~~i~v~~~~---------------v~l~iwD~~G~e~~ 160 (193)
.+||+++|.+|||||||+ ++.+..+. ..+| |++.+. ..+.+++.. ..+++||++|+.++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~--g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 79 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNT--GVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAG 79 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCS--SEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceE--EEEecCCcccceeeeeecccceeeeEEEEEECCCCccc
Confidence 479999999999999999 99988764 3333 555444 245555532 67999999999876
Q ss_pred C----cchh---hhccCCcEEEEEEECCC
Q 029430 161 F----DHVP---IACKDAVAILFMFDLTS 182 (193)
Q Consensus 161 ~----~~~~---~~~~~a~~illvyDit~ 182 (193)
. .+.. .+++.+|++++|+|+++
T Consensus 80 a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 80 ASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred ccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 3 2322 35789999999999997
No 163
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.07 E-value=7.7e-11 Score=108.82 Aligned_cols=93 Identities=11% Similarity=0.154 Sum_probs=63.1
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCc--cc---------c---ccccceeeeEEEEEEE-----CCeEEEEEEEeCCCCCC
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNE--QE---------R---SLQMAGLNLINKTLMV-----QGARIAFSIWDVGGDSR 159 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~--f~---------~---~~~t~g~~~~~~~i~v-----~~~~v~l~iwD~~G~e~ 159 (193)
-.||+++|..++|||||+ +++... +. . ...+.|..+....+.+ ++..+.++||||+|+++
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d 83 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD 83 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence 468999999999999999 998621 11 1 1113444444333333 56779999999999999
Q ss_pred CCcchhhhccCCcEEEEEEECCChhhHHHHHhc
Q 029430 160 SFDHVPIACKDAVAILFMFDLTSRCTLNRFDHN 192 (193)
Q Consensus 160 ~~~~~~~~~~~a~~illvyDit~~~Sf~~l~~W 192 (193)
|......+++.+|++|+|+|.++..+++....|
T Consensus 84 F~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~ 116 (599)
T 3cb4_D 84 FSYEVSRSLAACEGALLVVDAGQGVEAQTLANC 116 (599)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHH
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHH
Confidence 999999999999999999999998777776665
No 164
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.07 E-value=1.9e-10 Score=109.80 Aligned_cols=94 Identities=13% Similarity=0.075 Sum_probs=70.9
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcC------------cccc-----cc--ccceeeeEEEEEE------------ECCeE
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGN------------EQER-----SL--QMAGLNLINKTLM------------VQGAR 146 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~------------~f~~-----~~--~t~g~~~~~~~i~------------v~~~~ 146 (193)
...||+++|..++|||||+ +++.. .+.+ .. .|++.......+. .++..
T Consensus 18 ~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~ 97 (842)
T 1n0u_A 18 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS 97 (842)
T ss_dssp GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCC
Confidence 3679999999999999999 99864 2211 11 1333333222232 24567
Q ss_pred EEEEEEeCCCCCCCCcchhhhccCCcEEEEEEECCChhhHHHHHhc
Q 029430 147 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNRFDHN 192 (193)
Q Consensus 147 v~l~iwD~~G~e~~~~~~~~~~~~a~~illvyDit~~~Sf~~l~~W 192 (193)
+.++||||+|+++|......+++.+|++|+|||.++..+++....|
T Consensus 98 ~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~ 143 (842)
T 1n0u_A 98 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVL 143 (842)
T ss_dssp EEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHH
T ss_pred ceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH
Confidence 9999999999999999999999999999999999998888876655
No 165
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.04 E-value=1.1e-10 Score=102.27 Aligned_cols=85 Identities=9% Similarity=0.132 Sum_probs=62.1
Q ss_pred eeEEEEECCCCCChhhHH-hhhcC-------ccccc--------cccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcc
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGN-------EQERS--------LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH 163 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~-------~f~~~--------~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~ 163 (193)
.+||+++|..++|||||+ ++.+. .|..+ ....|..+....+.++.....+.||||+|+++|...
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~ 82 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKN 82 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHHH
Confidence 689999999999999999 99864 12110 011222222222334444578899999999998888
Q ss_pred hhhhccCCcEEEEEEECCChh
Q 029430 164 VPIACKDAVAILFMFDLTSRC 184 (193)
Q Consensus 164 ~~~~~~~a~~illvyDit~~~ 184 (193)
...+++.+|++|+|+|.++..
T Consensus 83 ~~~~~~~aD~~ilVvda~~g~ 103 (397)
T 1d2e_A 83 MITGTAPLDGCILVVAANDGP 103 (397)
T ss_dssp HHHTSSCCSEEEEEEETTTCS
T ss_pred HHhhHhhCCEEEEEEECCCCC
Confidence 888899999999999999843
No 166
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.04 E-value=6e-10 Score=97.88 Aligned_cols=96 Identities=11% Similarity=0.135 Sum_probs=69.3
Q ss_pred CceeeEEEEECCCCCChhhHH-hhhcC---ccc-cccc--cceeeeEEEEEEE-------------C--C----eEEEEE
Q 029430 97 DLVSLKISLLGDCQIGKTSFV-KYVGN---EQE-RSLQ--MAGLNLINKTLMV-------------Q--G----ARIAFS 150 (193)
Q Consensus 97 ~~~~~KivllGd~gvGKTSLl-r~~~~---~f~-~~~~--t~g~~~~~~~i~v-------------~--~----~~v~l~ 150 (193)
....+||+++|..++|||||+ ++.+. .+. +..+ |+...+....+.. + + ....+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 86 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 86 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence 345799999999999999999 99843 333 4444 6666654444422 1 1 137899
Q ss_pred EEeCCCCCCCCcchhhhccCCcEEEEEEECC----ChhhHHHHHhc
Q 029430 151 IWDVGGDSRSFDHVPIACKDAVAILFMFDLT----SRCTLNRFDHN 192 (193)
Q Consensus 151 iwD~~G~e~~~~~~~~~~~~a~~illvyDit----~~~Sf~~l~~W 192 (193)
+|||+|+++|.......+..+|++|+|+|.+ .+++++.+..|
T Consensus 87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~ 132 (410)
T 1kk1_A 87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMAL 132 (410)
T ss_dssp EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHH
T ss_pred EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHH
Confidence 9999999988766666677889999999999 46777776543
No 167
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.03 E-value=4.9e-11 Score=108.07 Aligned_cols=89 Identities=9% Similarity=0.096 Sum_probs=69.4
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEE
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illv 177 (193)
..+|+++|..++|||||+ ++.+..+. ...+.+..+.....+.+++ ..+.+|||+|++.|..++..++..+|++|+|
T Consensus 4 ~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aILV 81 (501)
T 1zo1_I 4 APVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVVLV 81 (501)
T ss_dssp CCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEEEE
Confidence 568999999999999999 99887766 3333333333333444455 4688999999999999999999999999999
Q ss_pred EECCC---hhhHHHHH
Q 029430 178 FDLTS---RCTLNRFD 190 (193)
Q Consensus 178 yDit~---~~Sf~~l~ 190 (193)
||.++ +++++.+.
T Consensus 82 Vda~~g~~~qT~e~l~ 97 (501)
T 1zo1_I 82 VAADDGVMPQTIEAIQ 97 (501)
T ss_dssp EETTTBSCTTTHHHHH
T ss_pred eecccCccHHHHHHHH
Confidence 99988 56666553
No 168
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.02 E-value=3.5e-10 Score=100.22 Aligned_cols=87 Identities=14% Similarity=0.185 Sum_probs=60.6
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcCc---cccc----------cccce-------------------eeeEEEEEEECC
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGNE---QERS----------LQMAG-------------------LNLINKTLMVQG 144 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~~---f~~~----------~~t~g-------------------~~~~~~~i~v~~ 144 (193)
...+||+++|..++|||||+ +++++. +... ..+++ +........++.
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 34689999999999999999 998654 1111 11211 111111112223
Q ss_pred eEEEEEEEeCCCCCCCCcchhhhccCCcEEEEEEECCChh
Q 029430 145 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRC 184 (193)
Q Consensus 145 ~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illvyDit~~~ 184 (193)
....+.||||+|+++|......++..+|++|+|+|.++..
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~ 141 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGV 141 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCS
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCC
Confidence 3468999999999999888888999999999999999853
No 169
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.01 E-value=2.6e-10 Score=103.86 Aligned_cols=85 Identities=11% Similarity=0.112 Sum_probs=59.9
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcC--ccc-------------------cccccceeeeEEEEEEECCeEEEEEEEeCCC
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGN--EQE-------------------RSLQMAGLNLINKTLMVQGARIAFSIWDVGG 156 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~--~f~-------------------~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G 156 (193)
...||+++|..++|||||+ +++.. .+. +...+.|..+......++...+.++||||+|
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG 91 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG 91 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence 3689999999999999999 99852 110 1111333333222233333348899999999
Q ss_pred CCCCCcchhhhccCCcEEEEEEECCCh
Q 029430 157 DSRSFDHVPIACKDAVAILFMFDLTSR 183 (193)
Q Consensus 157 ~e~~~~~~~~~~~~a~~illvyDit~~ 183 (193)
+++|......+++.+|++|+|+|.++.
T Consensus 92 ~~df~~~~~~~l~~aD~~IlVvDa~~g 118 (529)
T 2h5e_A 92 HEDFSEDTYRTLTAVDCCLMVIDAAKG 118 (529)
T ss_dssp STTCCHHHHHGGGGCSEEEEEEETTTC
T ss_pred ChhHHHHHHHHHHHCCEEEEEEeCCcc
Confidence 999998888899999999999999884
No 170
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.00 E-value=2.3e-10 Score=105.69 Aligned_cols=93 Identities=11% Similarity=0.174 Sum_probs=65.5
Q ss_pred eeEEEEECCCCCChhhHH-hhhcC--ccc---------cc---cccceeeeEEE--EEEE---CCeEEEEEEEeCCCCCC
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGN--EQE---------RS---LQMAGLNLINK--TLMV---QGARIAFSIWDVGGDSR 159 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~--~f~---------~~---~~t~g~~~~~~--~i~v---~~~~v~l~iwD~~G~e~ 159 (193)
..+|+++|..++|||||+ +++.. .+. .. ....|+.+... .+.+ ++..+.++||||+|+++
T Consensus 6 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~d 85 (600)
T 2ywe_A 6 VRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVD 85 (600)
T ss_dssp EEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHh
Confidence 569999999999999999 99752 111 00 11123332211 2222 56679999999999999
Q ss_pred CCcchhhhccCCcEEEEEEECCChhhHHHHHhc
Q 029430 160 SFDHVPIACKDAVAILFMFDLTSRCTLNRFDHN 192 (193)
Q Consensus 160 ~~~~~~~~~~~a~~illvyDit~~~Sf~~l~~W 192 (193)
|......+++.+|++|+|+|.++..+++....|
T Consensus 86 F~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~ 118 (600)
T 2ywe_A 86 FSYEVSRALAACEGALLLIDASQGIEAQTVANF 118 (600)
T ss_dssp GHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHH
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCccHHHHHHH
Confidence 998888899999999999999998877777766
No 171
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.00 E-value=1.6e-10 Score=106.91 Aligned_cols=84 Identities=15% Similarity=0.257 Sum_probs=63.0
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcCccc-cc-------------------------------cccceeeeEEEEEEECC
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RS-------------------------------LQMAGLNLINKTLMVQG 144 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~~f~-~~-------------------------------~~t~g~~~~~~~i~v~~ 144 (193)
...+||+++|..++|||||+ ++++.... .. .+.+..+.....+..+
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~- 243 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH- 243 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS-
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC-
Confidence 34789999999999999999 99876332 10 1112222222333333
Q ss_pred eEEEEEEEeCCCCCCCCcchhhhccCCcEEEEEEECCCh
Q 029430 145 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR 183 (193)
Q Consensus 145 ~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illvyDit~~ 183 (193)
...+.||||+|+++|......+++.+|++|+|+|.++.
T Consensus 244 -~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g 281 (611)
T 3izq_1 244 -RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTN 281 (611)
T ss_dssp -SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHH
T ss_pred -CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCC
Confidence 47889999999999998888899999999999999873
No 172
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=98.99 E-value=1.8e-10 Score=102.91 Aligned_cols=81 Identities=9% Similarity=0.158 Sum_probs=62.0
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcC--cccc--------------------------------ccccceeeeEEEEEEEC
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGN--EQER--------------------------------SLQMAGLNLINKTLMVQ 143 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~--~f~~--------------------------------~~~t~g~~~~~~~i~v~ 143 (193)
..+||+++|..++|||||+ +++++ .+.+ ...|+...+ ..+..
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~--~~~~~- 82 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIAL--WKFET- 82 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSC--EEEEC-
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEE--EEEec-
Confidence 5799999999999999999 99864 2210 011333222 33333
Q ss_pred CeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEEEECCCh
Q 029430 144 GARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR 183 (193)
Q Consensus 144 ~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illvyDit~~ 183 (193)
....+.||||+|+++|......++..+|++|+|+|.++.
T Consensus 83 -~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g 121 (458)
T 1f60_A 83 -PKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVG 121 (458)
T ss_dssp -SSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHH
T ss_pred -CCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcC
Confidence 347899999999999988888899999999999999986
No 173
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.99 E-value=2.5e-10 Score=96.62 Aligned_cols=82 Identities=15% Similarity=0.117 Sum_probs=59.2
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcCccc--cccc-cceeeeEEEEEEECCeEEEEEEEeCCCCC---------CCCcch
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQ-MAGLNLINKTLMVQGARIAFSIWDVGGDS---------RSFDHV 164 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~~f~--~~~~-t~g~~~~~~~i~v~~~~v~l~iwD~~G~e---------~~~~~~ 164 (193)
....+|+++|.+|||||||+ ++++..+. ...+ ++ .+.....+..++ ..+.+|||+|.+ .+....
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tT-r~~~~gi~~~~~--~~i~~iDTpG~~~~~~~~l~~~~~~~~ 82 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTT-RHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAA 82 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCC-SSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcc-eeeEEEEEEECC--eeEEEEECcCCCccchhhHHHHHHHHH
Confidence 45678999999999999999 99988764 2222 22 122122233344 688999999998 334455
Q ss_pred hhhccCCcEEEEEEECCC
Q 029430 165 PIACKDAVAILFMFDLTS 182 (193)
Q Consensus 165 ~~~~~~a~~illvyDit~ 182 (193)
..+++.+|++++|+|.++
T Consensus 83 ~~~l~~~D~vl~Vvd~~~ 100 (301)
T 1ega_A 83 SSSIGDVELVIFVVEGTR 100 (301)
T ss_dssp TSCCCCEEEEEEEEETTC
T ss_pred HHHHhcCCEEEEEEeCCC
Confidence 667899999999999976
No 174
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.97 E-value=9.7e-10 Score=96.77 Aligned_cols=83 Identities=19% Similarity=0.197 Sum_probs=47.8
Q ss_pred eEEEEECCCCCChhhHH-hhhcCccc-cccc--cceeeeEEEEE-------------------EECCe-EEEEEEEeCCC
Q 029430 101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQ--MAGLNLINKTL-------------------MVQGA-RIAFSIWDVGG 156 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~~~f~-~~~~--t~g~~~~~~~i-------------------~v~~~-~v~l~iwD~~G 156 (193)
+||+++|.+|||||||+ ++++.... ...| |+........+ .+++. .+.+++|||+|
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 58999999999999999 99988743 3332 22222211111 12332 57899999999
Q ss_pred CCC----CCcchh---hhccCCcEEEEEEECCCh
Q 029430 157 DSR----SFDHVP---IACKDAVAILFMFDLTSR 183 (193)
Q Consensus 157 ~e~----~~~~~~---~~~~~a~~illvyDit~~ 183 (193)
..+ ...+.. .+++++|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 864 233333 357899999999999986
No 175
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.95 E-value=7.1e-10 Score=97.92 Aligned_cols=61 Identities=21% Similarity=0.281 Sum_probs=53.6
Q ss_pred ccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEEEECCC----------hhhHHHHHhcC
Q 029430 129 QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTS----------RCTLNRFDHNQ 193 (193)
Q Consensus 129 ~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illvyDit~----------~~Sf~~l~~W~ 193 (193)
+|+|+++ +.+.+++ +.++||||+||+.|+.+|..||++++++|+|||+++ .++|+++..|+
T Consensus 203 ~TiGi~~--~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~ 273 (402)
T 1azs_C 203 LTSGIFE--TKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLF 273 (402)
T ss_dssp CCCSEEE--EEEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHH
T ss_pred ceeeeEE--EEeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHH
Confidence 3566665 4566766 899999999999999999999999999999999999 99999998884
No 176
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=98.94 E-value=3.9e-10 Score=93.73 Aligned_cols=27 Identities=26% Similarity=0.439 Sum_probs=24.4
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccc
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE 125 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~ 125 (193)
...||+++|++|||||||+ ++++..+.
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~ 52 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFL 52 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCS
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcC
Confidence 4579999999999999999 99998873
No 177
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.91 E-value=3.2e-10 Score=96.00 Aligned_cols=73 Identities=10% Similarity=-0.079 Sum_probs=62.2
Q ss_pred hHH-hhhcCccc--cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEEEECCChh-hHHHHH
Q 029430 115 SFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRC-TLNRFD 190 (193)
Q Consensus 115 SLl-r~~~~~f~--~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illvyDit~~~-Sf~~l~ 190 (193)
||+ +|+.+.|. ++.||+|..+. ..+..++ +++|||+ ||+|..+++.|++++|++|+|||+++++ +|+.+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence 799 99999996 57889995553 3333333 7899999 9999999999999999999999999998 899999
Q ss_pred hcC
Q 029430 191 HNQ 193 (193)
Q Consensus 191 ~W~ 193 (193)
+|+
T Consensus 106 ~~l 108 (301)
T 1u0l_A 106 KFL 108 (301)
T ss_dssp HHH
T ss_pred HHH
Confidence 985
No 178
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=98.90 E-value=1.6e-09 Score=101.49 Aligned_cols=91 Identities=12% Similarity=0.009 Sum_probs=67.0
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcC--ccc-------------------cccccceeeeEEEEEEECCeEEEEEEEeCC
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGN--EQE-------------------RSLQMAGLNLINKTLMVQGARIAFSIWDVG 155 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~--~f~-------------------~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~ 155 (193)
....||+++|..|+|||||+ +++.. .+. +...|++... ..+..++ +.++||||+
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~--~~~~~~~--~~i~liDTP 85 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAV--TTCFWKD--HRINIIDTP 85 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCE--EEEEETT--EEEEEECCC
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccce--EEEEECC--eEEEEEECc
Confidence 34789999999999999999 99842 111 1112333222 2334444 789999999
Q ss_pred CCCCCCcchhhhccCCcEEEEEEECCChhhHHHHHhc
Q 029430 156 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNRFDHN 192 (193)
Q Consensus 156 G~e~~~~~~~~~~~~a~~illvyDit~~~Sf~~l~~W 192 (193)
|+++|......+++.+|++|+|+|.++..+++....|
T Consensus 86 G~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~ 122 (691)
T 1dar_A 86 GHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVW 122 (691)
T ss_dssp SSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHH
T ss_pred CccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHH
Confidence 9999999999999999999999999998887776655
No 179
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=98.89 E-value=9.5e-10 Score=95.91 Aligned_cols=78 Identities=9% Similarity=0.104 Sum_probs=59.4
Q ss_pred EEEEECCCCCChhhHH-hhhcCccccccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEEEEC
Q 029430 102 KISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDL 180 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~~~f~~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illvyDi 180 (193)
+|+++|..++|||||+ +++ +...|++..+ ..+..++ ..+.||||+|+++|.......++.+|++|+|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~-----~~giTi~~~~--~~~~~~~--~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd- 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG-----KKGTSSDITM--YNNDKEG--RNMVFVDAHSYPKTLKSLITALNISDIAVLCIP- 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS-----EEEEESSSEE--EEECSSS--SEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-
T ss_pred EEEEECCCCCCHHHHHHHHH-----hCCEEEEeeE--EEEecCC--eEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-
Confidence 9999999999999999 988 3334554443 3344444 569999999999998777778899999999999
Q ss_pred CChhhHHHHH
Q 029430 181 TSRCTLNRFD 190 (193)
Q Consensus 181 t~~~Sf~~l~ 190 (193)
+ ...+....
T Consensus 93 ~-~g~~~qt~ 101 (370)
T 2elf_A 93 P-QGLDAHTG 101 (370)
T ss_dssp T-TCCCHHHH
T ss_pred C-CCCcHHHH
Confidence 4 44444333
No 180
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.88 E-value=1.1e-09 Score=95.16 Aligned_cols=55 Identities=13% Similarity=0.216 Sum_probs=47.0
Q ss_pred EEEECC----eEEEEEEEeCCCCCCCCcchhhhccCCcEEEEEEECC----------ChhhHHHHHhcC
Q 029430 139 TLMVQG----ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLT----------SRCTLNRFDHNQ 193 (193)
Q Consensus 139 ~i~v~~----~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illvyDit----------~~~Sf~~l~~W~ 193 (193)
.+.+++ ..+.++||||+||+.|+.+|..||++++++|+|||++ +.++|+++.+|+
T Consensus 171 ~f~~~~~~~~~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~ 239 (354)
T 2xtz_A 171 QFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELF 239 (354)
T ss_dssp EECCCCE------EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHH
T ss_pred EEEeccCccccceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHH
Confidence 344566 6799999999999999999999999999999999999 889999988873
No 181
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=98.85 E-value=3.1e-09 Score=99.75 Aligned_cols=92 Identities=11% Similarity=-0.064 Sum_probs=66.5
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcC--ccc------------cc-------cccceeeeEEEEEEE-----CCeEEEEEE
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGN--EQE------------RS-------LQMAGLNLINKTLMV-----QGARIAFSI 151 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~--~f~------------~~-------~~t~g~~~~~~~i~v-----~~~~v~l~i 151 (193)
...||+++|..++|||||+ +++.. .+. ++ ..|+.... ..+.+ ++..+.++|
T Consensus 9 ~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~--~~~~~~~~~~~~~~~~i~l 86 (704)
T 2rdo_7 9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAA--TTAFWSGMAKQYEPHRINI 86 (704)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeece--EEEEECCccccCCceeEEE
Confidence 3579999999999999999 99742 111 11 11222221 22332 234589999
Q ss_pred EeCCCCCCCCcchhhhccCCcEEEEEEECCChhhHHHHHhc
Q 029430 152 WDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNRFDHN 192 (193)
Q Consensus 152 wD~~G~e~~~~~~~~~~~~a~~illvyDit~~~Sf~~l~~W 192 (193)
|||+|+++|......+++.+|++|+|+|.++..+++....|
T Consensus 87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~ 127 (704)
T 2rdo_7 87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVW 127 (704)
T ss_pred EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHH
Confidence 99999999998999999999999999999987665554443
No 182
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=98.83 E-value=6.9e-10 Score=108.73 Aligned_cols=86 Identities=9% Similarity=0.140 Sum_probs=61.8
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcCc-------cc--------cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCC
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGNE-------QE--------RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF 161 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~~-------f~--------~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~ 161 (193)
...+||+++|..++|||||+ ++++.. |. ....+.|+.+....+.++.....+.||||+|+++|.
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~ 373 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYV 373 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHH
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHH
Confidence 45799999999999999999 998641 11 112234444333334455555789999999999998
Q ss_pred cchhhhccCCcEEEEEEECCCh
Q 029430 162 DHVPIACKDAVAILFMFDLTSR 183 (193)
Q Consensus 162 ~~~~~~~~~a~~illvyDit~~ 183 (193)
.....+++.+|++|+|+|.++.
T Consensus 374 ~~mi~gas~AD~aILVVDAtdG 395 (1289)
T 3avx_A 374 KNMITGAAQMDGAILVVAATDG 395 (1289)
T ss_dssp HHHHHTSCCCSEEEEEEETTTC
T ss_pred HHHHHHHhhCCEEEEEEcCCcc
Confidence 8888889999999999999985
No 183
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.83 E-value=6.6e-10 Score=102.42 Aligned_cols=83 Identities=12% Similarity=0.185 Sum_probs=44.9
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcCc-------------------------------cc-cccccceeeeEEEEEEECC
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGNE-------------------------------QE-RSLQMAGLNLINKTLMVQG 144 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~~-------------------------------f~-~~~~t~g~~~~~~~i~v~~ 144 (193)
...+||+++|..++|||||+ +++... +. +..+.+..+.....+..+
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~- 253 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD- 253 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC-
Confidence 34689999999999999999 996421 11 112222333333333333
Q ss_pred eEEEEEEEeCCCCCCCCcchhhhccCCcEEEEEEECCC
Q 029430 145 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTS 182 (193)
Q Consensus 145 ~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illvyDit~ 182 (193)
...+.||||+|+++|......++..+|++|+|+|.++
T Consensus 254 -~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~ 290 (592)
T 3mca_A 254 -KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQ 290 (592)
T ss_dssp ------CCEEESSSEEEEECCC-------CCSEEEEEE
T ss_pred -CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCC
Confidence 3788999999999999888889999999999999985
No 184
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=98.83 E-value=2.5e-09 Score=100.14 Aligned_cols=90 Identities=13% Similarity=0.017 Sum_probs=67.0
Q ss_pred eeeEEEEECCCCCChhhHH-hhhc--Cccc------------cc-------cccceeeeEEEEEEECCeEEEEEEEeCCC
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVG--NEQE------------RS-------LQMAGLNLINKTLMVQGARIAFSIWDVGG 156 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~--~~f~------------~~-------~~t~g~~~~~~~i~v~~~~v~l~iwD~~G 156 (193)
...+|+++|..|+|||||+ +++. +.+. ++ ..|+... ...+..++ +.++||||+|
T Consensus 9 ~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~--~~~~~~~~--~~i~liDTPG 84 (693)
T 2xex_A 9 KTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSA--ATTAAWEG--HRVNIIDTPG 84 (693)
T ss_dssp TEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCS--EEEEEETT--EEEEEECCCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeee--eEEEEECC--eeEEEEECcC
Confidence 3689999999999999999 9984 3221 10 1122222 23344444 7899999999
Q ss_pred CCCCCcchhhhccCCcEEEEEEECCChhhHHHHHhc
Q 029430 157 DSRSFDHVPIACKDAVAILFMFDLTSRCTLNRFDHN 192 (193)
Q Consensus 157 ~e~~~~~~~~~~~~a~~illvyDit~~~Sf~~l~~W 192 (193)
+.+|......+++.+|++|+|+|.++..+++....|
T Consensus 85 ~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~ 120 (693)
T 2xex_A 85 HVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVW 120 (693)
T ss_dssp CSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHH
T ss_pred CcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHH
Confidence 999999999999999999999999998777766554
No 185
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.82 E-value=1.9e-09 Score=100.52 Aligned_cols=87 Identities=13% Similarity=0.062 Sum_probs=64.9
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCccc--------------cccc---cceeeeEEEEEEECCeEEEEEEEeCCCCCCCC
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQE--------------RSLQ---MAGLNLINKTLMVQGARIAFSIWDVGGDSRSF 161 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f~--------------~~~~---t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~ 161 (193)
..+|+++|..|+|||||+ ++++.... ++.+ ..|+.+......+....+.++||||+|+++|.
T Consensus 9 ~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f~ 88 (665)
T 2dy1_A 9 IRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFV 88 (665)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGH
T ss_pred CcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccchH
Confidence 579999999999999999 98843221 1111 12334444444444445899999999999999
Q ss_pred cchhhhccCCcEEEEEEECCChhhH
Q 029430 162 DHVPIACKDAVAILFMFDLTSRCTL 186 (193)
Q Consensus 162 ~~~~~~~~~a~~illvyDit~~~Sf 186 (193)
.....+++.+|++++|+|.++....
T Consensus 89 ~~~~~~l~~ad~~ilVvD~~~g~~~ 113 (665)
T 2dy1_A 89 GEIRGALEAADAALVAVSAEAGVQV 113 (665)
T ss_dssp HHHHHHHHHCSEEEEEEETTTCSCH
T ss_pred HHHHHHHhhcCcEEEEEcCCcccch
Confidence 8888999999999999999875443
No 186
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=98.82 E-value=3.3e-09 Score=92.08 Aligned_cols=62 Identities=16% Similarity=0.273 Sum_probs=52.1
Q ss_pred cccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEEEECCC----------hhhHHHHHhcC
Q 029430 128 LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTS----------RCTLNRFDHNQ 193 (193)
Q Consensus 128 ~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illvyDit~----------~~Sf~~l~~W~ 193 (193)
.+|+|++. ..+.+++ +.++||||+||+.++.+|..||++++++|+|||+++ .++|+++.+|+
T Consensus 178 ~~T~Gi~~--~~~~~~~--~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~ 249 (353)
T 1cip_A 178 VKTTGIVE--THFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 249 (353)
T ss_dssp CCCCSEEE--EEEEETT--EEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHH
T ss_pred CceeceEE--EEEeeCC--eeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHH
Confidence 34667654 4566664 899999999999999999999999999999999999 56788887763
No 187
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=98.78 E-value=4.2e-09 Score=98.65 Aligned_cols=92 Identities=20% Similarity=0.218 Sum_probs=64.0
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCccc--cccccce--------eeeEEEEEEE--------------------------
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAG--------LNLINKTLMV-------------------------- 142 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f~--~~~~t~g--------~~~~~~~i~v-------------------------- 142 (193)
.+||+++|++|+|||||+ .+++..+. ...|++. .+.. .++.+
T Consensus 69 ~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~-~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 69 VFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKK-VTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCE-EEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCe-EEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 689999999999999999 99987754 3444331 1100 01111
Q ss_pred --------------------CCeE--EEEEEEeCCCCCC---CCcchhhhccCCcEEEEEEECCChhhHHHHHhc
Q 029430 143 --------------------QGAR--IAFSIWDVGGDSR---SFDHVPIACKDAVAILFMFDLTSRCTLNRFDHN 192 (193)
Q Consensus 143 --------------------~~~~--v~l~iwD~~G~e~---~~~~~~~~~~~a~~illvyDit~~~Sf~~l~~W 192 (193)
+... ..+.||||+|... .......+++.+|++|+|+|.++..++.+...|
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l 222 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYL 222 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHH
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHH
Confidence 1100 3589999999654 344556789999999999999998887776544
No 188
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.76 E-value=1.6e-09 Score=91.76 Aligned_cols=68 Identities=10% Similarity=0.198 Sum_probs=36.5
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcC-ccc-cc--------cccceeeeEEEEEEECCeEEEEEEEeCCCC-------CC
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGN-EQE-RS--------LQMAGLNLINKTLMVQGARIAFSIWDVGGD-------SR 159 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~-~f~-~~--------~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~-------e~ 159 (193)
...+||+++|++|+|||||+ ++.+. .+. .+ .++++.+.....+..++....+++||++|+ +.
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~ 95 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 95 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence 45799999999999999999 86654 554 22 123333332333344556689999999998 77
Q ss_pred CCcchh
Q 029430 160 SFDHVP 165 (193)
Q Consensus 160 ~~~~~~ 165 (193)
+..+..
T Consensus 96 ~~~l~~ 101 (301)
T 2qnr_A 96 FKTIIS 101 (301)
T ss_dssp CTTHHH
T ss_pred HHHHHH
Confidence 777765
No 189
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.74 E-value=9.5e-09 Score=89.46 Aligned_cols=62 Identities=16% Similarity=0.217 Sum_probs=46.5
Q ss_pred cccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcchhhhccCCcEEEEEEECCC----------hhhHHHHHhcC
Q 029430 128 LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTS----------RCTLNRFDHNQ 193 (193)
Q Consensus 128 ~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~~~~~~~a~~illvyDit~----------~~Sf~~l~~W~ 193 (193)
.+|+|++. ..+.+++ +.++||||+||+.++.+|..||++++++|+|||+++ .++|+++.+|+
T Consensus 186 ~~T~Gi~~--~~~~~~~--~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~ 257 (362)
T 1zcb_A 186 RPTKGIHE--YDFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIF 257 (362)
T ss_dssp CCCSSEEE--EEEEETT--EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHH
T ss_pred CCccceEE--EEeeeCC--eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHH
Confidence 35677765 4566665 899999999999999999999999999999999999 78999887763
No 190
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.74 E-value=6.8e-09 Score=92.05 Aligned_cols=93 Identities=11% Similarity=0.163 Sum_probs=52.8
Q ss_pred CceeeEEEEECCCCCChhhHH-hhhcCccc-cc--------cccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCc----
Q 029430 97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RS--------LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD---- 162 (193)
Q Consensus 97 ~~~~~KivllGd~gvGKTSLl-r~~~~~f~-~~--------~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~---- 162 (193)
....++|+|+|++|+|||||+ .+++..+. .. .++++.+.....+..++....+++||+.|.+.+..
T Consensus 28 ~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~ 107 (418)
T 2qag_C 28 RGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC 107 (418)
T ss_dssp -CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------
T ss_pred cCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhh
Confidence 345789999999999999999 99988763 21 23444333333333345556899999999876421
Q ss_pred ---------------------chhhhccCCcEEEEEEECCCh-hhHHHH
Q 029430 163 ---------------------HVPIACKDAVAILFMFDLTSR-CTLNRF 189 (193)
Q Consensus 163 ---------------------~~~~~~~~a~~illvyDit~~-~Sf~~l 189 (193)
+...+++++++.+++|+++.. .+|+.+
T Consensus 108 ~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~ 156 (418)
T 2qag_C 108 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPL 156 (418)
T ss_dssp CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHH
Confidence 123456777877788877764 455444
No 191
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=98.73 E-value=7.2e-09 Score=86.85 Aligned_cols=26 Identities=27% Similarity=0.383 Sum_probs=23.6
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCcc
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQ 124 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f 124 (193)
...+|+++|++|+|||||+ ++++..+
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~~~ 49 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGRDF 49 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCCCc
Confidence 3568999999999999999 9999887
No 192
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.72 E-value=1.4e-08 Score=87.41 Aligned_cols=38 Identities=11% Similarity=0.176 Sum_probs=31.4
Q ss_pred EEEEEEeCCCCCCC-------------CcchhhhccCCcEEEEEEECCChh
Q 029430 147 IAFSIWDVGGDSRS-------------FDHVPIACKDAVAILFMFDLTSRC 184 (193)
Q Consensus 147 v~l~iwD~~G~e~~-------------~~~~~~~~~~a~~illvyDit~~~ 184 (193)
..+.+|||+|.+.+ ..+...|+++++++|+|+|.++.+
T Consensus 136 ~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~ 186 (360)
T 3t34_A 136 VNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQD 186 (360)
T ss_dssp CSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSC
T ss_pred CCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCC
Confidence 46899999999887 556678899999999999876543
No 193
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.72 E-value=1.4e-08 Score=88.71 Aligned_cols=80 Identities=11% Similarity=0.152 Sum_probs=55.5
Q ss_pred eEEEEECCCCCChhhHH-hhhcCccc-cccc--cceeeeEEEEEEECC-------------------eEEEEEEEeCCCC
Q 029430 101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQ--MAGLNLINKTLMVQG-------------------ARIAFSIWDVGGD 157 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~~~f~-~~~~--t~g~~~~~~~i~v~~-------------------~~v~l~iwD~~G~ 157 (193)
+||.++|.+|||||||+ ++.+.... ..++ |+..+.. .+.+++ ....+++||++|+
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g--~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl 79 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVG--VVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL 79 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEE--EEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceecccee--eEecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence 68999999999999999 88876532 2222 3332222 223332 2367999999999
Q ss_pred CCCC----cchh---hhccCCcEEEEEEECCC
Q 029430 158 SRSF----DHVP---IACKDAVAILFMFDLTS 182 (193)
Q Consensus 158 e~~~----~~~~---~~~~~a~~illvyDit~ 182 (193)
.++. .+.. .+++.+|++++|+|+++
T Consensus 80 ~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 80 VKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 8753 2322 35789999999999987
No 194
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=98.68 E-value=7.5e-09 Score=94.61 Aligned_cols=88 Identities=18% Similarity=0.170 Sum_probs=59.3
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCccc----cccccceeeeEEEEEEECCe-----------------------------
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQE----RSLQMAGLNLINKTLMVQGA----------------------------- 145 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f~----~~~~t~g~~~~~~~i~v~~~----------------------------- 145 (193)
..+|+|+|..|+|||||+ ++++..+. ...+++.. + ..+..++.
T Consensus 65 ~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~-~--~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~ 141 (550)
T 2qpt_A 65 KPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDC-F--VAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLN 141 (550)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCS-E--EEEECCSSSEEECCC------------------CCCT
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccce-E--EEEEECCcccccCCceeeecCcccHHHHhhhcccccc
Confidence 579999999999999999 99998862 23332211 0 00100000
Q ss_pred --E---------EEEEEEeCCCCCC-----------CCcchhhhccCCcEEEEEEECCChhhHHHHH
Q 029430 146 --R---------IAFSIWDVGGDSR-----------SFDHVPIACKDAVAILFMFDLTSRCTLNRFD 190 (193)
Q Consensus 146 --~---------v~l~iwD~~G~e~-----------~~~~~~~~~~~a~~illvyDit~~~Sf~~l~ 190 (193)
. ..+.||||+|... +..+...++..+|++|+|+|.++....++..
T Consensus 142 ~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~ 208 (550)
T 2qpt_A 142 RFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFS 208 (550)
T ss_dssp TEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHH
T ss_pred cceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHH
Confidence 0 2588999999875 3345566788999999999998854444433
No 195
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.52 E-value=3.1e-10 Score=90.54 Aligned_cols=37 Identities=19% Similarity=0.355 Sum_probs=30.8
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeE
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLI 136 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~ 136 (193)
.+||+++|++|||||||+ +|+.+.|. .+.++++.++.
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~ 76 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVI 76 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCC
Confidence 479999999999999999 99988776 45567776664
No 196
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.52 E-value=3.6e-08 Score=84.84 Aligned_cols=27 Identities=26% Similarity=0.439 Sum_probs=24.1
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccc
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE 125 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~ 125 (193)
...+|+++|+++||||||+ ++++.+|.
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~ 57 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFL 57 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCS
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcC
Confidence 3579999999999999999 99998873
No 197
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.48 E-value=2.2e-07 Score=82.29 Aligned_cols=89 Identities=15% Similarity=0.162 Sum_probs=58.9
Q ss_pred EEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCC----CCcchhhh---ccCCc
Q 029430 102 KISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR----SFDHVPIA---CKDAV 172 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~----~~~~~~~~---~~~a~ 172 (193)
+|.|+|.+|+|||||+ .+.+.... ..++..........+.+++ ...+.+||+.|..+ +..+...+ ...++
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~ 237 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 237 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence 5799999999999999 88776543 2222111122223445554 35688999999753 33333333 34689
Q ss_pred EEEEEEECCChhhHHHHHhc
Q 029430 173 AILFMFDLTSRCTLNRFDHN 192 (193)
Q Consensus 173 ~illvyDit~~~Sf~~l~~W 192 (193)
.+|.++|++ +..++++..|
T Consensus 238 ~lL~vvDls-~~~~~~ls~g 256 (416)
T 1udx_A 238 VLLYVLDAA-DEPLKTLETL 256 (416)
T ss_dssp EEEEEEETT-SCHHHHHHHH
T ss_pred hhhEEeCCc-cCCHHHHHHH
Confidence 999999998 7777777655
No 198
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.45 E-value=2.8e-07 Score=81.00 Aligned_cols=83 Identities=16% Similarity=0.231 Sum_probs=60.6
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCcc-c-cccccceeeeEEEEEEECCeE---------------EEEEEEeCCCCCC--
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQ-E-RSLQMAGLNLINKTLMVQGAR---------------IAFSIWDVGGDSR-- 159 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f-~-~~~~t~g~~~~~~~i~v~~~~---------------v~l~iwD~~G~e~-- 159 (193)
..++.++|.+|||||||+ .+.+... . ...|....+.....+.+++.+ ..+.+||++|...
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~ 99 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGA 99 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCC
Confidence 579999999999999999 9988766 4 455544444444566666522 4689999998543
Q ss_pred -----CCcchhhhccCCcEEEEEEECCC
Q 029430 160 -----SFDHVPIACKDAVAILFMFDLTS 182 (193)
Q Consensus 160 -----~~~~~~~~~~~a~~illvyDit~ 182 (193)
+......+++.+|+++.|+|..+
T Consensus 100 s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 100 STGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33234456789999999999975
No 199
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=98.15 E-value=5.4e-06 Score=72.46 Aligned_cols=83 Identities=14% Similarity=0.282 Sum_probs=60.2
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCC----Ccchh---hhccC
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS----FDHVP---IACKD 170 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~----~~~~~---~~~~~ 170 (193)
..+|.++|.++||||||+ .+.+.... ..+|-...+.....+.+++ ..+++.|++|--+- ..+.. ...+.
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ 149 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVART 149 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHHHh
Confidence 368999999999999999 88876654 4445333455556778888 56789999986432 12222 23578
Q ss_pred CcEEEEEEECCChh
Q 029430 171 AVAILFMFDLTSRC 184 (193)
Q Consensus 171 a~~illvyDit~~~ 184 (193)
+|++++|.|.+++.
T Consensus 150 ad~il~vvD~~~p~ 163 (376)
T 4a9a_A 150 CNLLFIILDVNKPL 163 (376)
T ss_dssp CSEEEEEEETTSHH
T ss_pred cCccccccccCccH
Confidence 99999999999864
No 200
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.10 E-value=1.3e-06 Score=68.94 Aligned_cols=80 Identities=11% Similarity=0.169 Sum_probs=47.9
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCcccc-ccccceeeeE------------EEEEEECC------------------eEE
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQER-SLQMAGLNLI------------NKTLMVQG------------------ARI 147 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f~~-~~~t~g~~~~------------~~~i~v~~------------------~~v 147 (193)
..+|+++|.+|||||||+ +++...+.. ....+..++. ...+.++. ..+
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSDC 109 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTTC
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCCC
Confidence 468999999999999999 998653221 1111111110 01122221 235
Q ss_pred EEEEEeCCCCCCCCcchhhh-ccCCcEEEEEEECCCh
Q 029430 148 AFSIWDVGGDSRSFDHVPIA-CKDAVAILFMFDLTSR 183 (193)
Q Consensus 148 ~l~iwD~~G~e~~~~~~~~~-~~~a~~illvyDit~~ 183 (193)
.+.+|||+|+-. .+.+ ...++.+++|+|.++.
T Consensus 110 d~iiidt~G~~~----~~~~~~~~~~~~i~vvd~~~~ 142 (221)
T 2wsm_A 110 DLLLIENVGNLI----CPVDFDLGENYRVVMVSVTEG 142 (221)
T ss_dssp SEEEEEEEEBSS----GGGGCCCSCSEEEEEEEGGGC
T ss_pred CEEEEeCCCCCC----CCchhccccCcEEEEEeCCCc
Confidence 788999999611 1212 2357889999998764
No 201
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.07 E-value=1.2e-06 Score=72.75 Aligned_cols=57 Identities=16% Similarity=0.216 Sum_probs=36.4
Q ss_pred eEEEEECCCCCChhhHH-hhhcCccccccccceeeeEEEEEEECCeEEEEEEEeCCCCCCC
Q 029430 101 LKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS 160 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~~~f~~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~ 160 (193)
++++++|.+|||||||+ ++.+.......++.|.......+.++. .+++|||+|....
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~~ 157 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSLEN---GVKILDTPGILYK 157 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEECTT---SCEEESSCEECCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEeCC---CEEEEECCCcccC
Confidence 79999999999999999 998877654444445443333344432 5789999997643
No 202
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.89 E-value=1.3e-07 Score=84.48 Aligned_cols=92 Identities=14% Similarity=0.036 Sum_probs=56.8
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccccccccceeeeEEEEEEECCeEEEEEEEeCCCCCC--CCcch--------hhh
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR--SFDHV--------PIA 167 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~--~~~~~--------~~~ 167 (193)
..++|+|+|.+|+||||+. ++...-+....++.+++.........+......+||..|++. ....+ ..+
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~~ 117 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRKF 117 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3679999999999999999 876543323334443321111111112224457899998832 33333 556
Q ss_pred ccCCcEEEEEEECCChhhHHHHHh
Q 029430 168 CKDAVAILFMFDLTSRCTLNRFDH 191 (193)
Q Consensus 168 ~~~a~~illvyDit~~~Sf~~l~~ 191 (193)
+..+.+.++|+|.++. +++..+.
T Consensus 118 l~~~~G~~vV~D~tn~-~~~~R~~ 140 (469)
T 1bif_A 118 LSEEGGHVAVFDATNT-TRERRAM 140 (469)
T ss_dssp HHTTCCSEEEEESCCC-SHHHHHH
T ss_pred HHhCCCCEEEEeCCCC-CHHHHHH
Confidence 7778899999999997 4444333
No 203
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.88 E-value=6.2e-06 Score=70.96 Aligned_cols=40 Identities=5% Similarity=-0.015 Sum_probs=29.3
Q ss_pred EEEEEEeCCCCCCCCcchhhhccCCcEEEEEEECCChhhHHHH
Q 029430 147 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNRF 189 (193)
Q Consensus 147 v~l~iwD~~G~e~~~~~~~~~~~~a~~illvyDit~~~Sf~~l 189 (193)
+.+.||||+|.. .........+|++|+|+|.+..+.++.+
T Consensus 172 ~~~iiiDTpGi~---~~~~~~~~~aD~vl~V~d~~~~~~~~~l 211 (355)
T 3p32_A 172 FDVILIETVGVG---QSEVAVANMVDTFVLLTLARTGDQLQGI 211 (355)
T ss_dssp CCEEEEEECSCS---SHHHHHHTTCSEEEEEEESSTTCTTTTC
T ss_pred CCEEEEeCCCCC---cHHHHHHHhCCEEEEEECCCCCccHHHH
Confidence 678999999943 2333445889999999998776655443
No 204
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.73 E-value=2e-05 Score=65.96 Aligned_cols=58 Identities=12% Similarity=0.250 Sum_probs=35.3
Q ss_pred eeeEEEEECCCCCChhhHH-hhhcCccccccccceeeeEEEEEEECCeEEEEEEEeCCCCCC
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 159 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~~~f~~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~ 159 (193)
..++++++|.+|||||||+ ++.+.......+..|.......+.++. .+.+|||+|-..
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~ 177 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGK---ELELLDTPGILW 177 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEETT---TEEEEECCCCCC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEeCC---CEEEEECcCcCC
Confidence 3689999999999999999 988776432222222211112233333 578999999753
No 205
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.68 E-value=2.6e-05 Score=67.06 Aligned_cols=40 Identities=5% Similarity=0.003 Sum_probs=24.2
Q ss_pred EEEEEEeCCCCCCCCcchhhhccCCcEEEEEEECCChhhHHHH
Q 029430 147 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNRF 189 (193)
Q Consensus 147 v~l~iwD~~G~e~~~~~~~~~~~~a~~illvyDit~~~Sf~~l 189 (193)
+.+.++||+|-.. ........+|.+++|+|.++....+.+
T Consensus 167 ~~~iliDT~Gi~~---~~~~l~~~~d~vl~V~d~~~~~~~~~i 206 (349)
T 2www_A 167 YDIILIETVGVGQ---SEFAVADMVDMFVLLLPPAGGDELQGI 206 (349)
T ss_dssp CSEEEEECCCC-----CHHHHHTTCSEEEEEECCC--------
T ss_pred CCEEEEECCCcch---hhhhHHhhCCEEEEEEcCCcchhHHHh
Confidence 5678999999532 234456789999999999876544433
No 206
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=97.67 E-value=2.6e-05 Score=71.09 Aligned_cols=83 Identities=11% Similarity=0.120 Sum_probs=57.2
Q ss_pred eeEEEEECCCCCChhhHH-hhhcC------------------ccc---cccccceeeeEEEEEEECCeEEEEEEEeCCCC
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGN------------------EQE---RSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 157 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~------------------~f~---~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~ 157 (193)
.-+|.++|-.+.|||||+ +++.. .+. +.+...|+.+....+.+.-+.+.++|.||.|+
T Consensus 31 ~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH 110 (548)
T 3vqt_A 31 RRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGH 110 (548)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCG
T ss_pred cceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCc
Confidence 468999999999999999 88511 111 11112233333333333223388999999999
Q ss_pred CCCCcchhhhccCCcEEEEEEECCC
Q 029430 158 SRSFDHVPIACKDAVAILFMFDLTS 182 (193)
Q Consensus 158 e~~~~~~~~~~~~a~~illvyDit~ 182 (193)
.+|..-....++-+|++|+|+|..+
T Consensus 111 vDF~~Ev~raL~~~DgAvlVvda~~ 135 (548)
T 3vqt_A 111 QDFSEDTYRVLTAVDSALVVIDAAK 135 (548)
T ss_dssp GGCSHHHHHHHHSCSEEEEEEETTT
T ss_pred HHHHHHHHHHHHhcCceEEEeecCC
Confidence 9999998889999999999999876
No 207
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.35 E-value=5.5e-05 Score=64.66 Aligned_cols=36 Identities=8% Similarity=-0.094 Sum_probs=24.7
Q ss_pred EEEEEEeCCCCCCCCcchhhhccCCcEEEEEEECCChhh
Q 029430 147 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCT 185 (193)
Q Consensus 147 v~l~iwD~~G~e~~~~~~~~~~~~a~~illvyDit~~~S 185 (193)
+.+.|+||+|..... ......+|++|+|+|.++...
T Consensus 149 ~~i~liDTpG~~~~~---~~~~~~aD~vl~Vvd~~~~~~ 184 (341)
T 2p67_A 149 YDVVIVETVGVGQSE---TEVARMVDCFISLQIAGGGDD 184 (341)
T ss_dssp CSEEEEEEECCTTHH---HHHHTTCSEEEEEECC-----
T ss_pred CCEEEEeCCCccchH---HHHHHhCCEEEEEEeCCccHH
Confidence 679999999965432 234689999999999976543
No 208
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=97.29 E-value=0.00029 Score=65.91 Aligned_cols=83 Identities=16% Similarity=0.118 Sum_probs=56.6
Q ss_pred eeEEEEECCCCCChhhHH-hhhcC--------c------ccc---ccccceeeeEEEEEEE--C-----CeEEEEEEEeC
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGN--------E------QER---SLQMAGLNLINKTLMV--Q-----GARIAFSIWDV 154 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~--------~------f~~---~~~t~g~~~~~~~i~v--~-----~~~v~l~iwD~ 154 (193)
--+|.++|--+.|||||+ +++.. + +.+ .+...|+.+....+.+ . ...+.++|.||
T Consensus 13 IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDT 92 (709)
T 4fn5_A 13 YRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDT 92 (709)
T ss_dssp EEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeC
Confidence 357999999999999999 88621 1 111 1112233333333322 2 23589999999
Q ss_pred CCCCCCCcchhhhccCCcEEEEEEECCC
Q 029430 155 GGDSRSFDHVPIACKDAVAILFMFDLTS 182 (193)
Q Consensus 155 ~G~e~~~~~~~~~~~~a~~illvyDit~ 182 (193)
.|+-+|..-....++-+|++|+|.|...
T Consensus 93 PGHvDF~~Ev~~aLr~~DgavlvVDave 120 (709)
T 4fn5_A 93 PGHVDFTIEVERSLRVLDGAVVVFCGTS 120 (709)
T ss_dssp CSCTTCHHHHHHHHHHCSEEEEEEETTT
T ss_pred CCCcccHHHHHHHHHHhCeEEEEEECCC
Confidence 9999999988889999999999999876
No 209
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=97.18 E-value=5.1e-05 Score=70.33 Aligned_cols=81 Identities=14% Similarity=0.152 Sum_probs=59.6
Q ss_pred EEEEECCCCCChhhHH-hhhc--Ccc------------ccc---cccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcc
Q 029430 102 KISLLGDCQIGKTSFV-KYVG--NEQ------------ERS---LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH 163 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~--~~f------------~~~---~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~ 163 (193)
+|.++|--+.|||||+ +++. +.. .++ +...|+.+....+.+.-+...++|.||.|+.+|...
T Consensus 4 Ni~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~E 83 (638)
T 3j25_A 4 NIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLAE 83 (638)
T ss_dssp CCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHHH
Confidence 6899999999999999 8862 111 111 112244444444444444578999999999999998
Q ss_pred hhhhccCCcEEEEEEECCC
Q 029430 164 VPIACKDAVAILFMFDLTS 182 (193)
Q Consensus 164 ~~~~~~~a~~illvyDit~ 182 (193)
....++-+|++|+|.|..+
T Consensus 84 v~raL~~~DgavlVVDa~~ 102 (638)
T 3j25_A 84 VYRSLSVLDGAILLISAKD 102 (638)
T ss_dssp HHHHHTTCSEEECCEESSC
T ss_pred HHHHHHHhCEEEEEEeCCC
Confidence 8889999999999999876
No 210
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=97.15 E-value=0.00016 Score=58.39 Aligned_cols=22 Identities=23% Similarity=0.486 Sum_probs=19.7
Q ss_pred eeeEEEEECCCCCChhhHH-hhh
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~ 120 (193)
....+++.|.+|||||||+ ++.
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La 35 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFG 35 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHH
Confidence 3578999999999999999 887
No 211
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.97 E-value=0.00013 Score=62.42 Aligned_cols=36 Identities=8% Similarity=-0.060 Sum_probs=24.7
Q ss_pred EEEEEEeCCCCCCCCcchhhhccCCcEEEEEEECCChhh
Q 029430 147 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCT 185 (193)
Q Consensus 147 v~l~iwD~~G~e~~~~~~~~~~~~a~~illvyDit~~~S 185 (193)
+.+.++||+|..+.. ......+|.+++++|.+..+.
T Consensus 148 ~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~ 183 (337)
T 2qm8_A 148 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDE 183 (337)
T ss_dssp CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC---
T ss_pred CCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCccc
Confidence 678899999975432 233578899999999865443
No 212
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=96.84 E-value=0.0018 Score=55.92 Aligned_cols=75 Identities=12% Similarity=0.258 Sum_probs=45.6
Q ss_pred eEEEEECCCCCChhhHH-hhhcC------ccc-cccccceeeeEEEEEEECCeEEEEEEEeCCCCCCCCcch--------
Q 029430 101 LKISLLGDCQIGKTSFV-KYVGN------EQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHV-------- 164 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~~------~f~-~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~~~~~-------- 164 (193)
.+++++|.+|||||||+ .+.+. ... ...+ |.......+.+++. +.+.||.|-.....+.
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~--gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l 237 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFP--GTTLDMIEIPLESG---ATLYDTPGIINHHQMAHFVDARDL 237 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECT--TSSCEEEEEECSTT---CEEEECCSCCCCSSGGGGSCTTTH
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCC--CeEEeeEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHHH
Confidence 47999999999999999 88765 222 2222 22222233444432 7899999965332211
Q ss_pred hhhc--cCCcEEEEEEEC
Q 029430 165 PIAC--KDAVAILFMFDL 180 (193)
Q Consensus 165 ~~~~--~~a~~illvyDi 180 (193)
..++ +..++++++.|.
T Consensus 238 ~~~~~~~~i~~~~~~l~~ 255 (369)
T 3ec1_A 238 KIITPKREIHPRVYQLNE 255 (369)
T ss_dssp HHHSCSSCCCCEEEEECT
T ss_pred HHHhcccccCceEEEEcC
Confidence 1122 556777777765
No 213
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.68 E-value=0.00098 Score=55.98 Aligned_cols=38 Identities=8% Similarity=-0.046 Sum_probs=35.0
Q ss_pred CCCCCCcchhhhccCCcEEEEEEECCChh-hHHHHHhcC
Q 029430 156 GDSRSFDHVPIACKDAVAILFMFDLTSRC-TLNRFDHNQ 193 (193)
Q Consensus 156 G~e~~~~~~~~~~~~a~~illvyDit~~~-Sf~~l~~W~ 193 (193)
.++++..+.+.++.++|++|+|||+++++ +|+.+.+|+
T Consensus 65 i~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l 103 (302)
T 2yv5_A 65 VEERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNML 103 (302)
T ss_dssp ECCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHH
T ss_pred eCChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHH
Confidence 48999999999999999999999999997 999999885
No 214
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=96.64 E-value=0.0088 Score=56.65 Aligned_cols=27 Identities=30% Similarity=0.523 Sum_probs=24.0
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcCcc
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQ 124 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~~f 124 (193)
...-+|+|+|+.++|||||+ .+++..|
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~ 76 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDF 76 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCC
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCc
Confidence 44569999999999999999 9999877
No 215
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=96.41 E-value=0.0038 Score=53.93 Aligned_cols=57 Identities=16% Similarity=0.271 Sum_probs=34.6
Q ss_pred eEEEEECCCCCChhhHH-hhhcCc------cccccccceeeeEEEEEEECCeEEEEEEEeCCCCCCC
Q 029430 101 LKISLLGDCQIGKTSFV-KYVGNE------QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS 160 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~~~------f~~~~~t~g~~~~~~~i~v~~~~v~l~iwD~~G~e~~ 160 (193)
.+++++|.+|||||||+ .+.+.. .....+.-|.......+.+++. +.+.||.|-...
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~ 224 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINH 224 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCT
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcH
Confidence 57999999999999999 887652 1111111122222233444443 789999996543
No 216
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=96.16 E-value=0.0039 Score=57.42 Aligned_cols=60 Identities=13% Similarity=0.216 Sum_probs=38.5
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcCccc-cc-----cccceeeeEEEEEEE-CCeEEEEEEEeCCCCCC
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RS-----LQMAGLNLINKTLMV-QGARIAFSIWDVGGDSR 159 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~~f~-~~-----~~t~g~~~~~~~i~v-~~~~v~l~iwD~~G~e~ 159 (193)
.....|+++|.+|||||||+ ++.+.... .. ..|.|+..+ .+.+ ......+.++||+|-..
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~--~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMW--CVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEE--EEECSSSTTCEEEEEEECCBCC
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEe--ecccccCCCceEEEecCCCcCc
Confidence 34688999999999999999 99887632 22 123333221 1111 12235688999999654
No 217
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=96.12 E-value=0.0012 Score=53.69 Aligned_cols=33 Identities=6% Similarity=0.211 Sum_probs=22.5
Q ss_pred eCCCCCCCCcchhhhccCCcEEEEEEECCChhh
Q 029430 153 DVGGDSRSFDHVPIACKDAVAILFMFDLTSRCT 185 (193)
Q Consensus 153 D~~G~e~~~~~~~~~~~~a~~illvyDit~~~S 185 (193)
|.+||+.++.+|+.||.++|++|+|.|.+|++.
T Consensus 108 ~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R 140 (227)
T 3l82_B 108 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKR 140 (227)
T ss_dssp ---------CCHHHHHHHCSEEEEEEECBTTCC
T ss_pred ccCcHHHHHHHHHHHhcCCCEEEEEeccccHhH
Confidence 356999999999999999999999999999853
No 218
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.05 E-value=0.0037 Score=56.47 Aligned_cols=84 Identities=17% Similarity=0.152 Sum_probs=48.4
Q ss_pred eeEEEEECCCCCChhhHH-hhh------cCccc--cc---cc-----------cceeeeEEEEEEEC-------------
Q 029430 100 SLKISLLGDCQIGKTSFV-KYV------GNEQE--RS---LQ-----------MAGLNLINKTLMVQ------------- 143 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~------~~~f~--~~---~~-----------t~g~~~~~~~i~v~------------- 143 (193)
...|+++|.+||||||++ ++. +.+.. .. .+ ..+++++......+
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~~ 180 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFK 180 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHHH
Confidence 468999999999999999 887 33221 11 00 01222221100000
Q ss_pred CeEEEEEEEeCCCCCCCCc-chhh---h--ccCCcEEEEEEECCCh
Q 029430 144 GARIAFSIWDVGGDSRSFD-HVPI---A--CKDAVAILFMFDLTSR 183 (193)
Q Consensus 144 ~~~v~l~iwD~~G~e~~~~-~~~~---~--~~~a~~illvyDit~~ 183 (193)
...+.+.|+||+|...... +... . ...+|.+++|.|.+..
T Consensus 181 ~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g 226 (504)
T 2j37_W 181 NENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIG 226 (504)
T ss_dssp HTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCC
T ss_pred HCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccc
Confidence 0236789999999875332 1110 1 2278999999998764
No 219
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.81 E-value=0.015 Score=51.44 Aligned_cols=59 Identities=19% Similarity=0.338 Sum_probs=32.4
Q ss_pred eeEEEEECCCCCChhhHH-hhhcCcccc-ccc--cceeeeEEEEEEE--CCeEEEEEEEeCCCCC
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGNEQER-SLQ--MAGLNLINKTLMV--QGARIAFSIWDVGGDS 158 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~~f~~-~~~--t~g~~~~~~~i~v--~~~~v~l~iwD~~G~e 158 (193)
.++++|+|.+|+|||||+ .+.+-.+.. ... +.+.......+.. .+....+.++|+.|-.
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g 106 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFG 106 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhh
Confidence 467999999999999999 766654331 111 1111111111112 2223478899987654
No 220
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=95.69 E-value=0.0047 Score=51.09 Aligned_cols=23 Identities=22% Similarity=0.538 Sum_probs=20.1
Q ss_pred eeEEEEECCCCCChhhHH-hhhcC
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGN 122 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~ 122 (193)
.++++++|.+|+|||||+ .+.+-
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999999 66653
No 221
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.64 E-value=0.0053 Score=47.54 Aligned_cols=20 Identities=45% Similarity=0.718 Sum_probs=17.2
Q ss_pred eEEEEECCCCCChhhHH-hhh
Q 029430 101 LKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~ 120 (193)
.++.++|++|+|||||+ .+.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~ 21 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIV 21 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 37899999999999999 544
No 222
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.56 E-value=0.0055 Score=46.97 Aligned_cols=21 Identities=19% Similarity=0.401 Sum_probs=18.1
Q ss_pred eEEEEECCCCCChhhHH-hhhc
Q 029430 101 LKISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~ 121 (193)
-.++++|.+|+|||||+ .+.+
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 36899999999999999 7654
No 223
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=95.34 E-value=0.0022 Score=54.43 Aligned_cols=33 Identities=6% Similarity=0.183 Sum_probs=28.1
Q ss_pred CCCCCCCCcchhhhccCCcEEEEEEECCChhhH
Q 029430 154 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTL 186 (193)
Q Consensus 154 ~~G~e~~~~~~~~~~~~a~~illvyDit~~~Sf 186 (193)
.+||+.++.+|+.||.++|++|+|.|.+|++.+
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRl 226 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRH 226 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCC
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHH
Confidence 579999999999999999999999999998743
No 224
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.34 E-value=0.0066 Score=47.42 Aligned_cols=21 Identities=24% Similarity=0.387 Sum_probs=17.8
Q ss_pred eEEEEECCCCCChhhHH-hhhc
Q 029430 101 LKISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~ 121 (193)
-.++++|.+|+|||||+ .+.+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 36899999999999999 6553
No 225
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.31 E-value=0.0079 Score=47.22 Aligned_cols=20 Identities=25% Similarity=0.491 Sum_probs=17.8
Q ss_pred EEEECCCCCChhhHH-hhhcC
Q 029430 103 ISLLGDCQIGKTSFV-KYVGN 122 (193)
Q Consensus 103 ivllGd~gvGKTSLl-r~~~~ 122 (193)
|||+|++|+|||||+ +++..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 799999999999999 87643
No 226
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.06 E-value=0.0095 Score=45.77 Aligned_cols=19 Identities=26% Similarity=0.501 Sum_probs=16.6
Q ss_pred EEEECCCCCChhhHH-hhhc
Q 029430 103 ISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 103 ivllGd~gvGKTSLl-r~~~ 121 (193)
++|+|.+|+|||||+ .+.+
T Consensus 4 i~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 689999999999999 6653
No 227
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.03 E-value=0.01 Score=45.20 Aligned_cols=19 Identities=32% Similarity=0.565 Sum_probs=16.4
Q ss_pred EEEEECCCCCChhhHH-hhh
Q 029430 102 KISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~ 120 (193)
-++++|.+|+|||||+ .+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 4789999999999999 544
No 228
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.98 E-value=0.011 Score=45.58 Aligned_cols=20 Identities=30% Similarity=0.297 Sum_probs=17.2
Q ss_pred EEEEECCCCCChhhHH-hhhc
Q 029430 102 KISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~ 121 (193)
-++++|.+|+|||||+ .+.+
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 4889999999999999 6554
No 229
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.83 E-value=0.012 Score=46.12 Aligned_cols=21 Identities=24% Similarity=0.302 Sum_probs=18.1
Q ss_pred EEEEECCCCCChhhHH-hhhcC
Q 029430 102 KISLLGDCQIGKTSFV-KYVGN 122 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~~ 122 (193)
-|+++|.+|+|||||+ .+...
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5899999999999999 77644
No 230
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.81 E-value=0.012 Score=44.77 Aligned_cols=21 Identities=19% Similarity=0.202 Sum_probs=17.9
Q ss_pred eEEEEECCCCCChhhHH-hhhc
Q 029430 101 LKISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~ 121 (193)
-.++++|.+|+|||||+ .+.+
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999 6654
No 231
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.80 E-value=0.012 Score=47.05 Aligned_cols=20 Identities=15% Similarity=0.203 Sum_probs=17.5
Q ss_pred EEEEECCCCCChhhHH-hhhc
Q 029430 102 KISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~ 121 (193)
-++++|++|+|||||+ .+.+
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 5889999999999999 6654
No 232
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.70 E-value=0.014 Score=45.68 Aligned_cols=20 Identities=25% Similarity=0.366 Sum_probs=16.9
Q ss_pred EEEEECCCCCChhhHH-hhhc
Q 029430 102 KISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~ 121 (193)
-++++|.+|+|||||+ .+.+
T Consensus 22 i~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 4889999999999999 5543
No 233
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.69 E-value=0.014 Score=43.37 Aligned_cols=20 Identities=30% Similarity=0.469 Sum_probs=17.3
Q ss_pred EEEEECCCCCChhhHH-hhhc
Q 029430 102 KISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~ 121 (193)
.+++.|++|+|||+|+ .+..
T Consensus 45 ~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 45 NPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999 6654
No 234
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.68 E-value=0.014 Score=46.33 Aligned_cols=20 Identities=20% Similarity=0.522 Sum_probs=17.3
Q ss_pred EEEEECCCCCChhhHH-hhhc
Q 029430 102 KISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~ 121 (193)
.++++|.+|+|||||+ .+.+
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 5889999999999999 6554
No 235
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.67 E-value=0.016 Score=46.84 Aligned_cols=22 Identities=23% Similarity=0.489 Sum_probs=18.3
Q ss_pred EEEEECCCCCChhhHHhhhcCc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNE 123 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~ 123 (193)
.+.++|++|+|||||++.+.+-
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4789999999999999555553
No 236
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.66 E-value=0.017 Score=45.83 Aligned_cols=22 Identities=14% Similarity=0.404 Sum_probs=18.6
Q ss_pred eeEEEEECCCCCChhhHH-hhhc
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~ 121 (193)
.--|+|+|.+|+|||||+ .+..
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECcCCCCHHHHHHHHHh
Confidence 346899999999999999 7764
No 237
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.49 E-value=0.016 Score=45.02 Aligned_cols=21 Identities=19% Similarity=0.428 Sum_probs=17.8
Q ss_pred eEEEEECCCCCChhhHH-hhhc
Q 029430 101 LKISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~ 121 (193)
.-|+|+|.+|+|||||+ .+..
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999 7653
No 238
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.46 E-value=0.018 Score=42.69 Aligned_cols=19 Identities=26% Similarity=0.071 Sum_probs=17.0
Q ss_pred EEEEECCCCCChhhHH-hhh
Q 029430 102 KISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~ 120 (193)
.|++.|.+|+||||+. .+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~ 22 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLS 22 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 5899999999999999 664
No 239
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.41 E-value=0.018 Score=46.13 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=18.0
Q ss_pred EEEEECCCCCChhhHHhhhcCc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNE 123 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~ 123 (193)
.+.++|++|+|||||++.+.+-
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999555553
No 240
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.41 E-value=0.019 Score=42.32 Aligned_cols=19 Identities=26% Similarity=0.244 Sum_probs=17.0
Q ss_pred eEEEEECCCCCChhhHH-hh
Q 029430 101 LKISLLGDCQIGKTSFV-KY 119 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~ 119 (193)
.-|++.|.+|+||||+. .+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 35899999999999999 76
No 241
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.29 E-value=0.02 Score=44.69 Aligned_cols=21 Identities=19% Similarity=0.254 Sum_probs=18.1
Q ss_pred eeEEEEECCCCCChhhHH-hhh
Q 029430 100 SLKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~ 120 (193)
...+.++|.+|+|||||+ .+.
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~ 43 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLA 43 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 568999999999999999 543
No 242
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.27 E-value=0.019 Score=44.05 Aligned_cols=21 Identities=29% Similarity=0.390 Sum_probs=17.9
Q ss_pred eEEEEECCCCCChhhHH-hhhc
Q 029430 101 LKISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~ 121 (193)
..++++|.+|+||||++ .+.+
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999 6544
No 243
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.27 E-value=0.021 Score=43.54 Aligned_cols=20 Identities=25% Similarity=0.486 Sum_probs=17.3
Q ss_pred EEEEECCCCCChhhHH-hhhc
Q 029430 102 KISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~ 121 (193)
.|++.|.+|+||||++ .+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 6899999999999998 6543
No 244
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.26 E-value=0.022 Score=46.75 Aligned_cols=22 Identities=27% Similarity=0.545 Sum_probs=18.0
Q ss_pred EEEEECCCCCChhhHHhhhcCc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNE 123 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~ 123 (193)
-+.++|++|+|||||++.+.+-
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999555553
No 245
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.26 E-value=0.022 Score=44.30 Aligned_cols=20 Identities=25% Similarity=0.380 Sum_probs=17.7
Q ss_pred eEEEEECCCCCChhhHH-hhh
Q 029430 101 LKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~ 120 (193)
++|+|.|.+|+||||+. .+.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 47999999999999999 664
No 246
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.23 E-value=0.023 Score=44.32 Aligned_cols=20 Identities=25% Similarity=0.328 Sum_probs=17.7
Q ss_pred eEEEEECCCCCChhhHH-hhh
Q 029430 101 LKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~ 120 (193)
++|+|.|.+|+||||+. .+.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIV 21 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 47999999999999999 764
No 247
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.23 E-value=0.025 Score=45.75 Aligned_cols=22 Identities=18% Similarity=0.240 Sum_probs=18.3
Q ss_pred EEEEECCCCCChhhHHhhhcCc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNE 123 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~ 123 (193)
.+.++|.+|+|||||++.+.+-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999555553
No 248
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.22 E-value=0.021 Score=43.45 Aligned_cols=21 Identities=29% Similarity=0.390 Sum_probs=17.5
Q ss_pred EEEEECCCCCChhhHH-hhhcC
Q 029430 102 KISLLGDCQIGKTSFV-KYVGN 122 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~~ 122 (193)
.+.++|+.|+|||||+ -+.+.
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5889999999999999 55443
No 249
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.22 E-value=0.025 Score=45.70 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=18.2
Q ss_pred EEEEECCCCCChhhHHhhhcCc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNE 123 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~ 123 (193)
.+.++|.+|+|||||++.+.+-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999555553
No 250
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.19 E-value=0.025 Score=45.99 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=18.2
Q ss_pred EEEEECCCCCChhhHHhhhcCc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNE 123 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~ 123 (193)
.+.++|++|+|||||++.+.+-
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999555553
No 251
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.16 E-value=0.024 Score=42.41 Aligned_cols=21 Identities=19% Similarity=0.368 Sum_probs=18.4
Q ss_pred eEEEEECCCCCChhhHH-hhhc
Q 029430 101 LKISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~ 121 (193)
.-|++.|.+|+||||+. .+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 45899999999999999 7765
No 252
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.14 E-value=0.02 Score=44.75 Aligned_cols=20 Identities=30% Similarity=0.444 Sum_probs=17.1
Q ss_pred EEEEECCCCCChhhHH-hhhc
Q 029430 102 KISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~ 121 (193)
++.++|.+|+|||||+ .+.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 5889999999999999 5543
No 253
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=94.13 E-value=0.018 Score=43.65 Aligned_cols=20 Identities=20% Similarity=0.413 Sum_probs=17.3
Q ss_pred eEEEEECCCCCChhhHH-hhh
Q 029430 101 LKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~ 120 (193)
-.++++|++|+|||+|+ .+.
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~ 59 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATL 59 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 46899999999999999 554
No 254
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.09 E-value=0.025 Score=46.94 Aligned_cols=22 Identities=18% Similarity=0.392 Sum_probs=18.2
Q ss_pred EEEEECCCCCChhhHHhhhcCc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNE 123 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~ 123 (193)
.+.++|++|+|||||++.+.+-
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999555553
No 255
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.07 E-value=0.025 Score=46.19 Aligned_cols=22 Identities=14% Similarity=0.283 Sum_probs=18.1
Q ss_pred EEEEECCCCCChhhHHhhhcCc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNE 123 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~ 123 (193)
.+.++|++|+|||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999555543
No 256
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.04 E-value=0.029 Score=43.24 Aligned_cols=21 Identities=29% Similarity=0.419 Sum_probs=18.4
Q ss_pred eeEEEEECCCCCChhhHH-hhh
Q 029430 100 SLKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~ 120 (193)
.+.|+|.|.+|+||||+. .+.
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La 41 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLA 41 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999 654
No 257
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.02 E-value=0.026 Score=46.46 Aligned_cols=22 Identities=18% Similarity=0.431 Sum_probs=18.1
Q ss_pred EEEEECCCCCChhhHHhhhcCc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNE 123 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~ 123 (193)
.+.++|.+|+|||||++.+.+-
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEcCCCCcHHHHHHHHHcC
Confidence 4789999999999999555553
No 258
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.02 E-value=0.024 Score=42.35 Aligned_cols=20 Identities=25% Similarity=0.350 Sum_probs=17.1
Q ss_pred eEEEEECCCCCChhhHH-hhh
Q 029430 101 LKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~ 120 (193)
..|+++|.+|+|||||. .+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La 25 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLA 25 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 35999999999999999 554
No 259
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.02 E-value=0.026 Score=43.68 Aligned_cols=20 Identities=30% Similarity=0.448 Sum_probs=17.5
Q ss_pred eEEEEECCCCCChhhHH-hhh
Q 029430 101 LKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~ 120 (193)
-.|+++|.+|+||||+. .+.
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La 46 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFA 46 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHH
Confidence 37999999999999999 654
No 260
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.00 E-value=0.027 Score=44.93 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=17.9
Q ss_pred EEEEECCCCCChhhHHhhhcCc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNE 123 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~ 123 (193)
.+.++|++|+|||||++.+.+-
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999555553
No 261
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.97 E-value=0.026 Score=42.57 Aligned_cols=20 Identities=20% Similarity=0.139 Sum_probs=17.3
Q ss_pred EEEEECCCCCChhhHH-hhhc
Q 029430 102 KISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~ 121 (193)
.|++.|.+|+||||++ .+..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999 6643
No 262
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.94 E-value=0.025 Score=43.13 Aligned_cols=19 Identities=16% Similarity=0.331 Sum_probs=16.6
Q ss_pred EEEEECCCCCChhhHH-hhh
Q 029430 102 KISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~ 120 (193)
-++++|.+|+|||||+ .+.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~ 23 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLA 23 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 4789999999999999 654
No 263
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.94 E-value=0.027 Score=45.45 Aligned_cols=22 Identities=23% Similarity=0.372 Sum_probs=18.1
Q ss_pred EEEEECCCCCChhhHHhhhcCc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNE 123 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~ 123 (193)
.+.++|.+|+|||||++.+.+-
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999555553
No 264
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.93 E-value=0.03 Score=46.44 Aligned_cols=22 Identities=27% Similarity=0.297 Sum_probs=18.2
Q ss_pred EEEEECCCCCChhhHHhhhcCc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNE 123 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~ 123 (193)
.+.++|.+|+|||||++.+.+-
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999555553
No 265
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=93.93 E-value=0.027 Score=44.42 Aligned_cols=19 Identities=32% Similarity=0.684 Sum_probs=17.0
Q ss_pred EEEEECCCCCChhhHH-hhh
Q 029430 102 KISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~ 120 (193)
-++++|++|+|||+|+ .+.
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 5789999999999999 766
No 266
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=93.91 E-value=0.041 Score=48.89 Aligned_cols=63 Identities=17% Similarity=0.304 Sum_probs=40.8
Q ss_pred ceeeEEEEECCCCCChhhHH-hhhcC------------------ccc---ccc-ccceeeeEEEEEEE---CCeEEEEEE
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KYVGN------------------EQE---RSL-QMAGLNLINKTLMV---QGARIAFSI 151 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~~~~------------------~f~---~~~-~t~g~~~~~~~i~v---~~~~v~l~i 151 (193)
..-.-|.|+|..++|||+|+ ++++. .|. ... .|.|+-.....+.. ++..+.+.+
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvl 144 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLL 144 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEEE
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEecCccccccCCCCcceEEE
Confidence 34567889999999999999 88742 333 111 24555433222211 456789999
Q ss_pred EeCCCCCCC
Q 029430 152 WDVGGDSRS 160 (193)
Q Consensus 152 wD~~G~e~~ 160 (193)
.||.|-...
T Consensus 145 lDTeG~~~~ 153 (447)
T 3q5d_A 145 MDTQGTFDS 153 (447)
T ss_dssp EEEECCCSS
T ss_pred EcCCccccc
Confidence 999997543
No 267
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.86 E-value=0.029 Score=46.23 Aligned_cols=22 Identities=14% Similarity=0.431 Sum_probs=18.0
Q ss_pred EEEEECCCCCChhhHHhhhcCc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNE 123 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~ 123 (193)
.+.++|++|+|||||++.+.+-
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4789999999999999555553
No 268
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.86 E-value=0.026 Score=43.58 Aligned_cols=20 Identities=25% Similarity=0.228 Sum_probs=17.6
Q ss_pred eEEEEECCCCCChhhHH-hhh
Q 029430 101 LKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~ 120 (193)
..|+|+|.+|+||||++ .+.
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~ 39 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIA 39 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 46999999999999999 664
No 269
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.86 E-value=0.031 Score=46.08 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=18.1
Q ss_pred EEEEECCCCCChhhHHhhhcCc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNE 123 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~ 123 (193)
.+.++|++|+|||||++.+.+-
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999555553
No 270
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.85 E-value=0.032 Score=45.72 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=18.2
Q ss_pred EEEEECCCCCChhhHHhhhcCc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNE 123 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~ 123 (193)
.+.++|.+|+|||||++.+.+-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5889999999999999555543
No 271
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=93.83 E-value=0.029 Score=49.32 Aligned_cols=20 Identities=30% Similarity=0.664 Sum_probs=18.0
Q ss_pred EEEEECCCCCChhhHH-hhhc
Q 029430 102 KISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~ 121 (193)
.+.++|.+|+|||||+ .+.+
T Consensus 71 ~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 7899999999999999 6665
No 272
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.82 E-value=0.019 Score=42.70 Aligned_cols=20 Identities=40% Similarity=0.451 Sum_probs=17.2
Q ss_pred EEEEECCCCCChhhHH-hhhc
Q 029430 102 KISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~ 121 (193)
.+++.|++|+|||+|+ .+..
T Consensus 45 ~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 45 NPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999 6653
No 273
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=93.80 E-value=0.024 Score=44.10 Aligned_cols=20 Identities=20% Similarity=0.310 Sum_probs=17.6
Q ss_pred EEEEECCCCCChhhHH-hhhc
Q 029430 102 KISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~ 121 (193)
-+.++|++|+|||+|+ .+.+
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 5889999999999999 7654
No 274
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.79 E-value=0.032 Score=44.64 Aligned_cols=20 Identities=25% Similarity=0.403 Sum_probs=17.9
Q ss_pred eEEEEECCCCCChhhHH-hhh
Q 029430 101 LKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~ 120 (193)
..|+++|.+|+|||||+ .+.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 47999999999999999 665
No 275
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.79 E-value=0.031 Score=45.80 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=18.1
Q ss_pred EEEEECCCCCChhhHHhhhcCc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNE 123 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~ 123 (193)
.+.++|++|+|||||++.+.+-
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999555443
No 276
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.78 E-value=0.028 Score=43.53 Aligned_cols=20 Identities=20% Similarity=0.316 Sum_probs=17.2
Q ss_pred eEEEEECCCCCChhhHH-hhh
Q 029430 101 LKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~ 120 (193)
-.|+|+|.+|+|||||+ .+.
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~ 50 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVA 50 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 46899999999999999 553
No 277
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=93.75 E-value=0.031 Score=41.95 Aligned_cols=21 Identities=29% Similarity=0.287 Sum_probs=17.7
Q ss_pred eEEEEECCCCCChhhHH-hhhc
Q 029430 101 LKISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~ 121 (193)
.-|++.|.+|+||||+. .+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999 6553
No 278
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.71 E-value=0.032 Score=45.84 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=18.1
Q ss_pred EEEEECCCCCChhhHHhhhcCc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNE 123 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~ 123 (193)
.+.++|.+|+|||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999555553
No 279
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.70 E-value=0.032 Score=42.05 Aligned_cols=20 Identities=15% Similarity=0.097 Sum_probs=17.5
Q ss_pred eEEEEECCCCCChhhHH-hhh
Q 029430 101 LKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~ 120 (193)
..|++.|.+|+||||+. .+.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~ 24 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAM 24 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 47999999999999998 654
No 280
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.65 E-value=0.037 Score=45.57 Aligned_cols=21 Identities=29% Similarity=0.550 Sum_probs=17.6
Q ss_pred EEEEECCCCCChhhHHhhhcC
Q 029430 102 KISLLGDCQIGKTSFVKYVGN 122 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~ 122 (193)
.+.++|++|+|||||++.+.+
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 578999999999999955544
No 281
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=93.57 E-value=0.031 Score=43.42 Aligned_cols=21 Identities=24% Similarity=0.376 Sum_probs=18.0
Q ss_pred eEEEEECCCCCChhhHH-hhhc
Q 029430 101 LKISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~ 121 (193)
-.+++.|++|+|||+|+ .+..
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999 6653
No 282
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.57 E-value=0.035 Score=45.33 Aligned_cols=22 Identities=18% Similarity=0.356 Sum_probs=18.1
Q ss_pred EEEEECCCCCChhhHHhhhcCc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNE 123 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~ 123 (193)
.+.++|++|+|||||++.+.+-
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999555553
No 283
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.57 E-value=0.037 Score=41.85 Aligned_cols=20 Identities=35% Similarity=0.355 Sum_probs=17.5
Q ss_pred eEEEEECCCCCChhhHH-hhh
Q 029430 101 LKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~ 120 (193)
..|+++|.+|+||||+. .+.
T Consensus 6 ~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 46999999999999999 664
No 284
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=93.54 E-value=0.032 Score=42.39 Aligned_cols=19 Identities=21% Similarity=0.209 Sum_probs=17.0
Q ss_pred EEEECCCCCChhhHH-hhhc
Q 029430 103 ISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 103 ivllGd~gvGKTSLl-r~~~ 121 (193)
+++.|++|+|||+|+ .+..
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 899999999999999 6654
No 285
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.54 E-value=0.026 Score=44.70 Aligned_cols=19 Identities=26% Similarity=0.322 Sum_probs=13.2
Q ss_pred EEEEECCCCCChhhHH-hhh
Q 029430 102 KISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~ 120 (193)
-++|+|.+|+|||||+ .+.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp EEEEECSCC----CHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 5889999999999999 666
No 286
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.52 E-value=0.033 Score=43.03 Aligned_cols=20 Identities=20% Similarity=0.313 Sum_probs=17.6
Q ss_pred EEEEECCCCCChhhHH-hhhc
Q 029430 102 KISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~ 121 (193)
-++++|.+|+|||||+ +++.
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 5789999999999999 7764
No 287
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=93.52 E-value=0.054 Score=46.54 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=20.6
Q ss_pred CCceeeEEEEECCCCCChhhHH-hh
Q 029430 96 SDLVSLKISLLGDCQIGKTSFV-KY 119 (193)
Q Consensus 96 ~~~~~~KivllGd~gvGKTSLl-r~ 119 (193)
.....+||+++|.+++|||||+ ++
T Consensus 5 ~~~~~~k~lllG~~~sGKsT~~kq~ 29 (354)
T 2xtz_A 5 SGIHIRKLLLLGAGESGKSTIFKQI 29 (354)
T ss_dssp CCCEEEEEEEECSTTSSHHHHHHHH
T ss_pred CCCCceeEEEECCCCCcHHHHHHHH
Confidence 3456899999999999999999 54
No 288
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=93.51 E-value=0.032 Score=42.80 Aligned_cols=20 Identities=25% Similarity=0.263 Sum_probs=17.3
Q ss_pred EEEEECCCCCChhhHH-hhhc
Q 029430 102 KISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~ 121 (193)
-+++.|++|+|||+|+ .+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999 6653
No 289
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.47 E-value=0.033 Score=42.89 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=18.1
Q ss_pred eEEEEECCCCCChhhHH-hhhc
Q 029430 101 LKISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~ 121 (193)
.+|.++|.+|+||||+. .+.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 47999999999999999 6654
No 290
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=93.43 E-value=0.034 Score=43.07 Aligned_cols=19 Identities=37% Similarity=0.604 Sum_probs=17.0
Q ss_pred EEEEECCCCCChhhHH-hhh
Q 029430 102 KISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~ 120 (193)
-++++|++|+|||+|+ .+.
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~ 44 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFI 44 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 4788999999999999 776
No 291
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.41 E-value=0.035 Score=41.66 Aligned_cols=20 Identities=20% Similarity=0.250 Sum_probs=17.3
Q ss_pred eEEEEECCCCCChhhHH-hhh
Q 029430 101 LKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~ 120 (193)
..|+++|.+|+||||++ .+.
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~ 29 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVA 29 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHH
Confidence 46899999999999999 554
No 292
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.37 E-value=0.049 Score=41.10 Aligned_cols=21 Identities=19% Similarity=0.275 Sum_probs=18.3
Q ss_pred eeEEEEECCCCCChhhHH-hhh
Q 029430 100 SLKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~ 120 (193)
...|++.|.+|+||||+. .+.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 457999999999999999 665
No 293
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=93.35 E-value=0.032 Score=48.24 Aligned_cols=37 Identities=19% Similarity=0.400 Sum_probs=24.8
Q ss_pred EEEEECCCCCChhhHHhhhcCccccccccceeeeEEEEEEECCeEE
Q 029430 102 KISLLGDCQIGKTSFVKYVGNEQERSLQMAGLNLINKTLMVQGARI 147 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~f~~~~~t~g~~~~~~~i~v~~~~v 147 (193)
-+.++|++|+|||||++.+.+-. .|+.| ++.++|+.+
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~---~p~~G------~I~i~G~~i 68 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE---QPDSG------EISLSGKTI 68 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS---CCSEE------EEEETTEEE
T ss_pred EEEEECCCCchHHHHHHHHhcCC---CCCCc------EEEECCEEC
Confidence 47899999999999995555532 23333 455666544
No 294
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.35 E-value=0.035 Score=43.38 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=17.9
Q ss_pred eEEEEECCCCCChhhHH-hhhc
Q 029430 101 LKISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~ 121 (193)
++|+|.|.+|+||||+. .+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 37999999999999999 6643
No 295
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=93.27 E-value=0.04 Score=43.62 Aligned_cols=20 Identities=20% Similarity=0.335 Sum_probs=17.4
Q ss_pred eEEEEECCCCCChhhHH-hhh
Q 029430 101 LKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~ 120 (193)
++|+++|.+|+||+|.. ++.
T Consensus 1 M~Iil~GpPGsGKgTqa~~La 21 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLA 21 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 47999999999999998 654
No 296
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.26 E-value=0.046 Score=41.91 Aligned_cols=20 Identities=25% Similarity=0.135 Sum_probs=17.8
Q ss_pred eEEEEECCCCCChhhHH-hhh
Q 029430 101 LKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~ 120 (193)
..|++.|.+|+||||++ .+.
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~ 25 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLK 25 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHH
Confidence 57999999999999999 664
No 297
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.26 E-value=0.037 Score=47.69 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=17.9
Q ss_pred EEEEECCCCCChhhHHhhhcCc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNE 123 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~ 123 (193)
-+.++|++|+|||||++.+.+-
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999555443
No 298
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.24 E-value=0.038 Score=42.73 Aligned_cols=21 Identities=19% Similarity=0.170 Sum_probs=17.3
Q ss_pred eeEEEEECCCCCChhhHH-hhh
Q 029430 100 SLKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~ 120 (193)
..-|+++|.+|+|||||. .+.
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La 46 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALN 46 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 346899999999999998 543
No 299
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=93.23 E-value=0.038 Score=47.71 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=17.9
Q ss_pred EEEEECCCCCChhhHHhhhcCc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNE 123 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~ 123 (193)
-+.++|++|+|||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 4789999999999999555543
No 300
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.23 E-value=0.038 Score=42.80 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=18.2
Q ss_pred eeEEEEECCCCCChhhHH-hhhc
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~ 121 (193)
...|.++|.+|+|||||+ .+.+
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999 5543
No 301
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=93.23 E-value=0.038 Score=47.71 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=17.9
Q ss_pred EEEEECCCCCChhhHHhhhcCc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNE 123 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~ 123 (193)
-+.++|++|+|||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHCC
Confidence 4789999999999999555553
No 302
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.22 E-value=0.037 Score=41.92 Aligned_cols=20 Identities=25% Similarity=0.285 Sum_probs=17.6
Q ss_pred eEEEEECCCCCChhhHH-hhh
Q 029430 101 LKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~ 120 (193)
..|++.|.+|+||||+. .+.
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~ 26 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALA 26 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 57999999999999999 654
No 303
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=93.18 E-value=0.039 Score=48.03 Aligned_cols=22 Identities=14% Similarity=0.407 Sum_probs=18.0
Q ss_pred EEEEECCCCCChhhHHhhhcCc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNE 123 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~ 123 (193)
-+.++|++|+|||||++.+.+-
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHcC
Confidence 4789999999999999555553
No 304
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=93.15 E-value=0.051 Score=39.98 Aligned_cols=22 Identities=18% Similarity=0.372 Sum_probs=17.7
Q ss_pred eEEEEECCCCCChhhHHhhhcC
Q 029430 101 LKISLLGDCQIGKTSFVKYVGN 122 (193)
Q Consensus 101 ~KivllGd~gvGKTSLlr~~~~ 122 (193)
..|++.|++|+|||.+++.+..
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~ 46 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQ 46 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999944443
No 305
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=93.14 E-value=0.039 Score=47.76 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=18.0
Q ss_pred EEEEECCCCCChhhHHhhhcCc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNE 123 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~ 123 (193)
-+.++|.+|+|||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCcHHHHHHHHHHcC
Confidence 4789999999999999555553
No 306
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.14 E-value=0.049 Score=40.42 Aligned_cols=21 Identities=24% Similarity=0.270 Sum_probs=17.8
Q ss_pred eEEEEECCCCCChhhHH-hhhc
Q 029430 101 LKISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~ 121 (193)
++|++.|.+|+||||+. .+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 37999999999999999 6543
No 307
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.13 E-value=0.044 Score=44.39 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=17.9
Q ss_pred EEEEECCCCCChhhHHhhhcCc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNE 123 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~ 123 (193)
.+.++|++|+|||||++.+.+-
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999555553
No 308
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=93.12 E-value=0.041 Score=47.72 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=18.0
Q ss_pred EEEEECCCCCChhhHHhhhcCc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNE 123 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~ 123 (193)
-+.++|.+|+|||||++.+.+-
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 4789999999999999555543
No 309
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.07 E-value=0.046 Score=42.63 Aligned_cols=20 Identities=20% Similarity=0.272 Sum_probs=17.5
Q ss_pred eEEEEECCCCCChhhHH-hhh
Q 029430 101 LKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~ 120 (193)
.+|.++|.+|+||||++ .+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~ 26 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMA 26 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 57999999999999999 554
No 310
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=93.06 E-value=0.042 Score=42.41 Aligned_cols=20 Identities=20% Similarity=0.177 Sum_probs=17.9
Q ss_pred EEEEECCCCCChhhHH-hhhc
Q 029430 102 KISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~ 121 (193)
-++++|++|+|||+|+ .+..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999 8864
No 311
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=92.99 E-value=0.044 Score=40.26 Aligned_cols=22 Identities=14% Similarity=0.259 Sum_probs=18.0
Q ss_pred EEEEECCCCCChhhHHhhhcCc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNE 123 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~ 123 (193)
.|++.|++|+|||++++.+...
T Consensus 29 ~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 29 PVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp CEEEEEETTCCHHHHHGGGCCT
T ss_pred cEEEECCCCccHHHHHHHHHHh
Confidence 4899999999999999555443
No 312
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.93 E-value=0.05 Score=42.59 Aligned_cols=20 Identities=20% Similarity=0.365 Sum_probs=17.8
Q ss_pred eEEEEECCCCCChhhHH-hhh
Q 029430 101 LKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~ 120 (193)
.+|+|+|.+|+||||+. .+.
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La 25 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQ 25 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 58999999999999998 654
No 313
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=92.93 E-value=0.046 Score=42.89 Aligned_cols=20 Identities=20% Similarity=0.370 Sum_probs=17.9
Q ss_pred EEEEECCCCCChhhHH-hhhc
Q 029430 102 KISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~ 121 (193)
-++++|++|+|||+|+ .+..
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 5789999999999999 8775
No 314
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=92.92 E-value=0.053 Score=43.58 Aligned_cols=22 Identities=18% Similarity=0.113 Sum_probs=19.2
Q ss_pred eeEEEEECCCCCChhhHH-hhhc
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~ 121 (193)
.++|+|.|.+|+||||+. ++..
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999 7753
No 315
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=92.92 E-value=0.038 Score=47.11 Aligned_cols=21 Identities=29% Similarity=0.496 Sum_probs=18.3
Q ss_pred eeEEEEECCCCCChhhHH-hhh
Q 029430 100 SLKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~ 120 (193)
.-|+.++|.+|+|||||+ .+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~ 191 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLA 191 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHH
Confidence 569999999999999999 543
No 316
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=92.91 E-value=0.052 Score=46.76 Aligned_cols=21 Identities=38% Similarity=0.602 Sum_probs=19.0
Q ss_pred eeeEEEEECCCCCChhhHH-hh
Q 029430 99 VSLKISLLGDCQIGKTSFV-KY 119 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~ 119 (193)
...||+|+|.+|+|||||+ ++
T Consensus 32 ~~~killlG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 32 RLVKILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp CCEEEEEECSTTSSHHHHHHHH
T ss_pred CccEEEEECCCCCcHHHHHHHH
Confidence 4789999999999999999 64
No 317
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=92.90 E-value=0.048 Score=47.09 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=19.7
Q ss_pred EEEEECCCCCChhhHH-hhhcCcc
Q 029430 102 KISLLGDCQIGKTSFV-KYVGNEQ 124 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~~~f 124 (193)
.++++|.+|||||||+ .+.+...
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 6899999999999999 7776543
No 318
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=92.87 E-value=0.071 Score=40.47 Aligned_cols=21 Identities=24% Similarity=0.293 Sum_probs=18.0
Q ss_pred eeEEEEECCCCCChhhHH-hhh
Q 029430 100 SLKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~ 120 (193)
...|+++|.+|+||||++ .+.
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~ 34 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLA 34 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHH
Confidence 467999999999999999 653
No 319
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.86 E-value=0.061 Score=40.52 Aligned_cols=20 Identities=30% Similarity=0.388 Sum_probs=17.7
Q ss_pred eEEEEECCCCCChhhHH-hhh
Q 029430 101 LKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~ 120 (193)
..|++.|.+|+||||+. .+.
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIV 24 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 57999999999999998 664
No 320
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.85 E-value=0.045 Score=45.98 Aligned_cols=20 Identities=25% Similarity=0.323 Sum_probs=17.4
Q ss_pred eEEEEECCCCCChhhHH-hhh
Q 029430 101 LKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~ 120 (193)
-.++++|.+|+|||||+ .+.
T Consensus 103 ~vi~lvG~nGsGKTTll~~La 123 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLG 123 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHH
Confidence 36889999999999999 665
No 321
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=92.85 E-value=0.057 Score=43.25 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=18.1
Q ss_pred EEEEECCCCCChhhHHhhhcCc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNE 123 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~ 123 (193)
.+.++|+.|+|||||++.+.+-
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999555543
No 322
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.82 E-value=0.054 Score=41.45 Aligned_cols=21 Identities=24% Similarity=0.162 Sum_probs=18.4
Q ss_pred eEEEEECCCCCChhhHH-hhhc
Q 029430 101 LKISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~ 121 (193)
..|++.|.+|+||||++ .+..
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 57999999999999999 6654
No 323
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=92.81 E-value=0.044 Score=40.97 Aligned_cols=20 Identities=25% Similarity=0.414 Sum_probs=17.0
Q ss_pred eEEEEECCCCCChhhHH-hhh
Q 029430 101 LKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~ 120 (193)
--++++|++|+|||+|+ .+.
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~ 57 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWV 57 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 36889999999999999 544
No 324
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.81 E-value=0.05 Score=43.11 Aligned_cols=20 Identities=25% Similarity=0.139 Sum_probs=16.9
Q ss_pred EEEEECCCCCChhhHH-hhhc
Q 029430 102 KISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~ 121 (193)
.+.++|.+|+|||||+ .+.+
T Consensus 24 ~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 5789999999999999 5443
No 325
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.77 E-value=0.063 Score=41.41 Aligned_cols=21 Identities=24% Similarity=0.396 Sum_probs=18.1
Q ss_pred eEEEEECCCCCChhhHH-hhhc
Q 029430 101 LKISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~ 121 (193)
+.|.++|.+|+||||+. .+.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999 6654
No 326
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=92.76 E-value=0.049 Score=43.51 Aligned_cols=18 Identities=28% Similarity=0.455 Sum_probs=16.2
Q ss_pred EEEECCCCCChhhHH-hhh
Q 029430 103 ISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 103 ivllGd~gvGKTSLl-r~~ 120 (193)
++++|++|+|||+|+ .+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~ 70 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVA 70 (254)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 899999999999999 544
No 327
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.75 E-value=0.079 Score=40.66 Aligned_cols=20 Identities=35% Similarity=0.321 Sum_probs=17.8
Q ss_pred eEEEEECCCCCChhhHH-hhh
Q 029430 101 LKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~ 120 (193)
..|++.|.+|+||||+. .+.
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 57999999999999999 665
No 328
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=92.74 E-value=0.05 Score=41.76 Aligned_cols=20 Identities=25% Similarity=0.358 Sum_probs=17.3
Q ss_pred eEEEEECCCCCChhhHH-hhh
Q 029430 101 LKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~ 120 (193)
--+++.|++|+|||+|+ .+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~ 75 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIA 75 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 46899999999999999 554
No 329
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=92.72 E-value=0.05 Score=44.60 Aligned_cols=20 Identities=20% Similarity=0.255 Sum_probs=17.2
Q ss_pred eEEEEECCCCCChhhHH-hhh
Q 029430 101 LKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~ 120 (193)
=.++++|.+|+|||||+ .+.
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~ 46 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMI 46 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHH
Confidence 36899999999999999 554
No 330
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=92.71 E-value=0.081 Score=41.94 Aligned_cols=22 Identities=18% Similarity=0.483 Sum_probs=18.6
Q ss_pred eeEEEEECCCCCChhhHH-hhhc
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~ 121 (193)
..-|++.|..|+|||||+ .+.+
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 467999999999999999 5543
No 331
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=92.69 E-value=0.042 Score=46.35 Aligned_cols=22 Identities=18% Similarity=0.384 Sum_probs=18.5
Q ss_pred EEEEECCCCCChhhHHhhhcCc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNE 123 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~ 123 (193)
.+.++|.+|+|||||++.+.+-
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTS
T ss_pred EEEEECCCCchHHHHHHHHHcC
Confidence 6899999999999999555553
No 332
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=92.68 E-value=0.056 Score=44.06 Aligned_cols=22 Identities=18% Similarity=0.357 Sum_probs=18.0
Q ss_pred EEEEECCCCCChhhHHhhhcCc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNE 123 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~ 123 (193)
.+.++|++|+|||||++.+.+-
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999555553
No 333
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=92.65 E-value=0.053 Score=45.15 Aligned_cols=22 Identities=18% Similarity=0.214 Sum_probs=18.3
Q ss_pred EEEEECCCCCChhhHH-hhhcCc
Q 029430 102 KISLLGDCQIGKTSFV-KYVGNE 123 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~~~ 123 (193)
-++++|.+|+|||||+ .+.+..
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTC
T ss_pred eEEEECCCCCcHHHHHHHhcccc
Confidence 5789999999999999 665543
No 334
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=92.65 E-value=0.053 Score=40.81 Aligned_cols=19 Identities=21% Similarity=0.380 Sum_probs=16.7
Q ss_pred EEEEECCCCCChhhHH-hhh
Q 029430 102 KISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~ 120 (193)
+|+++|.+|+||||+. .+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La 25 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALA 25 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 6999999999999998 553
No 335
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=92.63 E-value=0.052 Score=44.97 Aligned_cols=20 Identities=30% Similarity=0.200 Sum_probs=17.9
Q ss_pred eEEEEECCCCCChhhHH-hhh
Q 029430 101 LKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~ 120 (193)
.-|+|.|.+|+||||++ .+.
T Consensus 34 ~livl~G~sGsGKSTla~~L~ 54 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIF 54 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 46999999999999999 775
No 336
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=92.63 E-value=0.13 Score=45.82 Aligned_cols=60 Identities=18% Similarity=0.337 Sum_probs=41.3
Q ss_pred eEEEEECCCCCChhhHH-hhh------------------cCccc---cccc-cceeeeEEEEEEE---CCeEEEEEEEeC
Q 029430 101 LKISLLGDCQIGKTSFV-KYV------------------GNEQE---RSLQ-MAGLNLINKTLMV---QGARIAFSIWDV 154 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~------------------~~~f~---~~~~-t~g~~~~~~~i~v---~~~~v~l~iwD~ 154 (193)
.=|.++|..++|||.|+ .++ ...|. ...+ |.|+-.....+.+ ++..+.+-+.||
T Consensus 68 ~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlllDT 147 (457)
T 4ido_A 68 VAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDT 147 (457)
T ss_dssp EEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEEEE
T ss_pred EEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEEec
Confidence 34559999999999999 765 23444 2222 7787665443333 677899999999
Q ss_pred CCCCCC
Q 029430 155 GGDSRS 160 (193)
Q Consensus 155 ~G~e~~ 160 (193)
.|....
T Consensus 148 EG~~d~ 153 (457)
T 4ido_A 148 QGTFDS 153 (457)
T ss_dssp CCBTCT
T ss_pred cCCCCc
Confidence 986543
No 337
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.63 E-value=0.051 Score=45.57 Aligned_cols=20 Identities=30% Similarity=0.282 Sum_probs=17.5
Q ss_pred eEEEEECCCCCChhhHH-hhh
Q 029430 101 LKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~ 120 (193)
--++++|.+|+||||++ .+.
T Consensus 101 ~vi~lvG~nGsGKTTll~~La 121 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLA 121 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHH
Confidence 46889999999999999 654
No 338
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.62 E-value=0.055 Score=42.60 Aligned_cols=20 Identities=20% Similarity=0.371 Sum_probs=17.9
Q ss_pred eEEEEECCCCCChhhHH-hhh
Q 029430 101 LKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~ 120 (193)
..|+|.|.+|+||||+. .+.
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 57999999999999999 664
No 339
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.62 E-value=0.024 Score=43.69 Aligned_cols=19 Identities=26% Similarity=0.637 Sum_probs=16.7
Q ss_pred EEEEECCCCCChhhHH-hhh
Q 029430 102 KISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~ 120 (193)
.+.++|.+|+|||||+ .++
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~ 23 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMM 23 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 5889999999999999 554
No 340
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.62 E-value=0.056 Score=43.86 Aligned_cols=21 Identities=24% Similarity=0.366 Sum_probs=17.4
Q ss_pred EEEEECCCCCChhhHHhhhcC
Q 029430 102 KISLLGDCQIGKTSFVKYVGN 122 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~ 122 (193)
.+.++|.+|+|||||++.+.+
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999954444
No 341
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.60 E-value=0.058 Score=40.71 Aligned_cols=20 Identities=30% Similarity=0.376 Sum_probs=17.5
Q ss_pred eEEEEECCCCCChhhHH-hhh
Q 029430 101 LKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~ 120 (193)
..|++.|.+|+|||++. .+.
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHH
Confidence 46899999999999999 665
No 342
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.58 E-value=0.058 Score=44.31 Aligned_cols=21 Identities=14% Similarity=0.292 Sum_probs=17.4
Q ss_pred EEEEECCCCCChhhHHhhhcC
Q 029430 102 KISLLGDCQIGKTSFVKYVGN 122 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~ 122 (193)
.+.++|.+|+|||||++.+.+
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999944444
No 343
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=92.57 E-value=0.034 Score=47.73 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=18.0
Q ss_pred EEEEECCCCCChhhHHhhhcCc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNE 123 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~ 123 (193)
-+.++|++|+|||||++.+.+-
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTS
T ss_pred EEEEECCCCccHHHHHHHHHcC
Confidence 4789999999999999555553
No 344
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=92.56 E-value=0.063 Score=42.38 Aligned_cols=20 Identities=20% Similarity=0.185 Sum_probs=17.4
Q ss_pred eEEEEECCCCCChhhHH-hhh
Q 029430 101 LKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~ 120 (193)
+.|+|.|.+|+||||+. .+.
T Consensus 1 m~I~l~G~~GsGKsT~a~~La 21 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVK 21 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 36899999999999999 664
No 345
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=92.51 E-value=0.056 Score=45.58 Aligned_cols=20 Identities=15% Similarity=0.350 Sum_probs=17.1
Q ss_pred eEEEEECCCCCChhhHH-hhh
Q 029430 101 LKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~ 120 (193)
-.++|+|++|+|||||+ .+.
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~ 147 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLI 147 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHh
Confidence 37899999999999999 443
No 346
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.51 E-value=0.061 Score=40.58 Aligned_cols=20 Identities=30% Similarity=0.195 Sum_probs=17.4
Q ss_pred EEEEECCCCCChhhHH-hhhc
Q 029430 102 KISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~ 121 (193)
.|++.|.+|+||||+. .+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999 6654
No 347
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.50 E-value=0.062 Score=41.48 Aligned_cols=20 Identities=30% Similarity=0.489 Sum_probs=17.5
Q ss_pred EEEEECCCCCChhhHH-hhhc
Q 029430 102 KISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~ 121 (193)
-+.++|.+|+|||+|+ +++.
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999 8764
No 348
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.48 E-value=0.062 Score=40.76 Aligned_cols=20 Identities=20% Similarity=0.144 Sum_probs=17.4
Q ss_pred EEEEECCCCCChhhHH-hhhc
Q 029430 102 KISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~ 121 (193)
-|++.|.+|+||||++ ++..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999 6654
No 349
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.48 E-value=0.073 Score=40.61 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=18.6
Q ss_pred eeEEEEECCCCCChhhHH-hhhc
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~ 121 (193)
..+|+++|.+|+||||+. .+..
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999 6654
No 350
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=92.47 E-value=0.05 Score=47.45 Aligned_cols=21 Identities=24% Similarity=0.441 Sum_probs=17.7
Q ss_pred EEEEECCCCCChhhHHhhhcC
Q 029430 102 KISLLGDCQIGKTSFVKYVGN 122 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~ 122 (193)
.+.++|++|+|||||++.+.+
T Consensus 49 ~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHhC
Confidence 489999999999999955544
No 351
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=92.45 E-value=0.057 Score=46.76 Aligned_cols=21 Identities=19% Similarity=0.441 Sum_probs=17.6
Q ss_pred EEEEECCCCCChhhHHhhhcC
Q 029430 102 KISLLGDCQIGKTSFVKYVGN 122 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~ 122 (193)
-+.++|.+|+|||||++.+.+
T Consensus 56 i~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEcCCCchHHHHHHHHhc
Confidence 378999999999999955554
No 352
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=92.42 E-value=0.056 Score=45.94 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=18.5
Q ss_pred eeEEEEECCCCCChhhHH-hhhc
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~ 121 (193)
.--++++|.+|+||||++ .+.+
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999 6653
No 353
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=92.39 E-value=0.057 Score=42.37 Aligned_cols=20 Identities=30% Similarity=0.403 Sum_probs=17.3
Q ss_pred EEEEECCCCCChhhHH-hhhc
Q 029430 102 KISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~ 121 (193)
-++++|++|+|||+|+ +++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999998 7754
No 354
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=92.38 E-value=0.058 Score=44.38 Aligned_cols=21 Identities=29% Similarity=0.532 Sum_probs=18.2
Q ss_pred EEEEECCCCCChhhHH-hhhcC
Q 029430 102 KISLLGDCQIGKTSFV-KYVGN 122 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~~ 122 (193)
-+++.|..|+|||+|+ .+...
T Consensus 33 ~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 33 LTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcCCHHHHHHHHHHH
Confidence 5889999999999999 87643
No 355
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.33 E-value=0.085 Score=40.75 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=18.7
Q ss_pred eeEEEEECCCCCChhhHH-hhhc
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~ 121 (193)
...|.++|.+|+|||||+ .+..
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999 6554
No 356
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=92.33 E-value=0.061 Score=44.85 Aligned_cols=20 Identities=25% Similarity=0.449 Sum_probs=17.7
Q ss_pred eEEEEECCCCCChhhHH-hhh
Q 029430 101 LKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~ 120 (193)
--++++|.+|+|||||+ .+.
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 36799999999999999 776
No 357
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.26 E-value=0.023 Score=43.97 Aligned_cols=19 Identities=32% Similarity=0.359 Sum_probs=16.8
Q ss_pred EEEEECCCCCChhhHH-hhh
Q 029430 102 KISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~ 120 (193)
-|++.|.+|+||||++ .+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~ 21 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLS 21 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 4899999999999999 664
No 358
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=92.23 E-value=0.055 Score=44.39 Aligned_cols=20 Identities=25% Similarity=0.371 Sum_probs=17.3
Q ss_pred EEEEECCCCCChhhHH-hhhc
Q 029430 102 KISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~ 121 (193)
-++++|.+|+|||+|+ .+..
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 4789999999999999 7654
No 359
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.18 E-value=0.053 Score=42.50 Aligned_cols=20 Identities=25% Similarity=0.233 Sum_probs=17.5
Q ss_pred eEEEEECCCCCChhhHH-hhh
Q 029430 101 LKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~ 120 (193)
..|+|+|.+|+||||+. .+.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La 26 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIK 26 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 47999999999999998 654
No 360
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=92.14 E-value=0.065 Score=42.86 Aligned_cols=19 Identities=21% Similarity=0.300 Sum_probs=16.6
Q ss_pred EEEEECCCCCChhhHH-hhh
Q 029430 102 KISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~ 120 (193)
.++++|++|+|||+|+ .+.
T Consensus 47 ~vll~G~~GtGKT~la~~la 66 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIA 66 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHH
Confidence 4999999999999999 543
No 361
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=92.11 E-value=0.081 Score=45.37 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=19.0
Q ss_pred ceeeEEEEECCCCCChhhHH-hh
Q 029430 98 LVSLKISLLGDCQIGKTSFV-KY 119 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl-r~ 119 (193)
...+|++|+|.+++||||++ ++
T Consensus 30 ~~~~klLlLG~geSGKST~~KQm 52 (353)
T 1cip_A 30 AREVKLLLLGAGESGKSTIVKQM 52 (353)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHH
T ss_pred cccceEEEEcCCCCCchhHHHHH
Confidence 44899999999999999999 43
No 362
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=92.07 E-value=0.077 Score=42.04 Aligned_cols=20 Identities=30% Similarity=0.380 Sum_probs=17.7
Q ss_pred eEEEEECCCCCChhhHH-hhh
Q 029430 101 LKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~ 120 (193)
.+|+|+|.+|+||||+. .+.
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La 37 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLA 37 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 57999999999999998 654
No 363
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.04 E-value=0.069 Score=40.57 Aligned_cols=21 Identities=29% Similarity=0.268 Sum_probs=17.9
Q ss_pred eEEEEECCCCCChhhHH-hhhc
Q 029430 101 LKISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~ 121 (193)
..|++.|.+|+||||+. .+..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 47999999999999998 6543
No 364
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=92.03 E-value=0.059 Score=44.36 Aligned_cols=20 Identities=25% Similarity=0.290 Sum_probs=17.9
Q ss_pred EEEEECCCCCChhhHH-hhhc
Q 029430 102 KISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~ 121 (193)
-++|.|+.|+|||+|+ .+..
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~ 52 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGIN 52 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 5889999999999999 8764
No 365
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=91.97 E-value=0.068 Score=43.90 Aligned_cols=18 Identities=28% Similarity=0.287 Sum_probs=16.1
Q ss_pred EEEECCCCCChhhHH-hhh
Q 029430 103 ISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 103 ivllGd~gvGKTSLl-r~~ 120 (193)
++++|++|+|||+|+ .+.
T Consensus 47 vlL~Gp~GtGKTtLakala 65 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVA 65 (274)
T ss_dssp EEEESSTTSCHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 899999999999999 543
No 366
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=91.95 E-value=0.072 Score=42.29 Aligned_cols=19 Identities=32% Similarity=0.275 Sum_probs=16.6
Q ss_pred EEEEECCCCCChhhHH-hhh
Q 029430 102 KISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~ 120 (193)
-+++.|++|+|||+|+ .+.
T Consensus 41 ~vll~G~~GtGKT~la~~la 60 (262)
T 2qz4_A 41 GALLLGPPGCGKTLLAKAVA 60 (262)
T ss_dssp EEEEESCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 4899999999999999 554
No 367
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=91.94 E-value=0.071 Score=43.35 Aligned_cols=18 Identities=28% Similarity=0.455 Sum_probs=16.2
Q ss_pred EEEECCCCCChhhHH-hhh
Q 029430 103 ISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 103 ivllGd~gvGKTSLl-r~~ 120 (193)
++++|++|+|||+|+ .+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~ 94 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVA 94 (278)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHH
Confidence 899999999999999 544
No 368
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=91.93 E-value=0.071 Score=41.78 Aligned_cols=20 Identities=20% Similarity=0.152 Sum_probs=17.6
Q ss_pred eEEEEECCCCCChhhHH-hhh
Q 029430 101 LKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~ 120 (193)
++|+|+|.+|+||||+. .+.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La 26 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIK 26 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 57999999999999998 653
No 369
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=91.91 E-value=0.069 Score=43.17 Aligned_cols=19 Identities=32% Similarity=0.298 Sum_probs=16.8
Q ss_pred EEEEECCCCCChhhHH-hhh
Q 029430 102 KISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~ 120 (193)
.+++.|++|+|||+|+ .+.
T Consensus 53 ~~ll~G~~GtGKT~la~~la 72 (285)
T 3h4m_A 53 GILLYGPPGTGKTLLAKAVA 72 (285)
T ss_dssp EEEEESSSSSSHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHH
Confidence 5999999999999999 554
No 370
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=91.91 E-value=0.07 Score=44.93 Aligned_cols=21 Identities=19% Similarity=0.363 Sum_probs=18.0
Q ss_pred eeEEEEECCCCCChhhHH-hhh
Q 029430 100 SLKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~ 120 (193)
..-+.++|.+|+|||||+ .+.
T Consensus 90 g~ivgI~G~sGsGKSTL~~~L~ 111 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTARVLQ 111 (312)
T ss_dssp CEEEEEECCTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCchHHHHHHHHH
Confidence 567899999999999999 554
No 371
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=91.91 E-value=0.077 Score=40.20 Aligned_cols=20 Identities=30% Similarity=0.235 Sum_probs=17.6
Q ss_pred eEEEEECCCCCChhhHH-hhh
Q 029430 101 LKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~ 120 (193)
..|++.|.+|+||||+. .+.
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La 30 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIV 30 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 47999999999999999 654
No 372
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=91.89 E-value=0.075 Score=40.86 Aligned_cols=21 Identities=24% Similarity=0.110 Sum_probs=18.1
Q ss_pred eeEEEEECCCCCChhhHH-hhh
Q 029430 100 SLKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~ 120 (193)
...|++.|.+|+||||+. .+.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~ 31 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLV 31 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHH
Confidence 357999999999999999 654
No 373
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=91.89 E-value=0.035 Score=47.70 Aligned_cols=22 Identities=27% Similarity=0.617 Sum_probs=18.0
Q ss_pred EEEEECCCCCChhhHHhhhcCc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNE 123 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~ 123 (193)
-+.++|++|+|||||++.+.+-
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999555553
No 374
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=91.88 E-value=0.083 Score=39.26 Aligned_cols=19 Identities=21% Similarity=0.256 Sum_probs=16.8
Q ss_pred EEEEECCCCCChhhHH-hhh
Q 029430 102 KISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~ 120 (193)
.|++.|.+|+|||++. .+.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La 23 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELA 23 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 5899999999999998 654
No 375
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=91.83 E-value=0.081 Score=39.77 Aligned_cols=20 Identities=25% Similarity=0.223 Sum_probs=17.6
Q ss_pred eEEEEECCCCCChhhHH-hhh
Q 029430 101 LKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~ 120 (193)
..|++.|.+|+||||+. .+.
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~ 27 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIV 27 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 47999999999999999 664
No 376
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=91.77 E-value=0.067 Score=44.55 Aligned_cols=20 Identities=30% Similarity=0.335 Sum_probs=17.6
Q ss_pred EEEEECCCCCChhhHH-hhhc
Q 029430 102 KISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~ 121 (193)
-+++.|++|+|||+|+ .+.+
T Consensus 47 ~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 47 NIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999 6654
No 377
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=91.77 E-value=0.08 Score=40.72 Aligned_cols=21 Identities=33% Similarity=0.292 Sum_probs=18.2
Q ss_pred eeEEEEECCCCCChhhHH-hhh
Q 029430 100 SLKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~ 120 (193)
...|++.|.+|+||||++ .+.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~ 30 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLV 30 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 357999999999999999 665
No 378
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=91.75 E-value=0.077 Score=42.96 Aligned_cols=19 Identities=21% Similarity=0.230 Sum_probs=16.6
Q ss_pred EEEEECCCCCChhhHH-hhh
Q 029430 102 KISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~ 120 (193)
-|+++|.+|+|||||. .+.
T Consensus 3 li~I~G~~GSGKSTla~~La 22 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIA 22 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 3789999999999999 764
No 379
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=91.72 E-value=0.096 Score=42.50 Aligned_cols=21 Identities=29% Similarity=0.243 Sum_probs=18.3
Q ss_pred eeEEEEECCCCCChhhHH-hhh
Q 029430 100 SLKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~ 120 (193)
++||++.|.+|||||++. .+.
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la 27 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAA 27 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHHHHH
Confidence 689999999999999996 543
No 380
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=91.71 E-value=0.095 Score=42.07 Aligned_cols=22 Identities=32% Similarity=0.412 Sum_probs=18.7
Q ss_pred eeEEEEECCCCCChhhHH-hhhc
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~ 121 (193)
.+.|.+.|.+|+||||+. .+..
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999998 6543
No 381
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=91.69 E-value=0.081 Score=44.11 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=18.1
Q ss_pred EEEEECCCCCChhhHHhhhcCc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNE 123 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~ 123 (193)
.+.++|.+|+|||||++.+.+-
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5789999999999999555553
No 382
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=91.69 E-value=0.073 Score=39.96 Aligned_cols=20 Identities=25% Similarity=0.192 Sum_probs=13.6
Q ss_pred eEEEEECCCCCChhhHH-hhh
Q 029430 101 LKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~ 120 (193)
..|++.|.+|+||||+. .+.
T Consensus 6 ~~I~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp CEEEEECCC----CHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 46999999999999999 654
No 383
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=91.63 E-value=0.077 Score=45.73 Aligned_cols=21 Identities=29% Similarity=0.275 Sum_probs=17.9
Q ss_pred eeEEEEECCCCCChhhHH-hhh
Q 029430 100 SLKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~ 120 (193)
.--++++|.+|+|||||+ .+.
T Consensus 157 g~vi~lvG~nGsGKTTll~~La 178 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLA 178 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHH
Confidence 346899999999999999 654
No 384
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=91.59 E-value=0.075 Score=40.04 Aligned_cols=18 Identities=17% Similarity=0.230 Sum_probs=15.6
Q ss_pred EEEEECCCCCChhhHH-hh
Q 029430 102 KISLLGDCQIGKTSFV-KY 119 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~ 119 (193)
-.+++|+.|+|||||+ .+
T Consensus 28 ~~~i~G~NGsGKStll~ai 46 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAI 46 (182)
T ss_dssp EEEEEECTTSSHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHH
Confidence 4689999999999999 44
No 385
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=91.58 E-value=0.086 Score=42.68 Aligned_cols=21 Identities=29% Similarity=0.411 Sum_probs=17.9
Q ss_pred eEEEEECCCCCChhhHH-hhhc
Q 029430 101 LKISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~ 121 (193)
..|++.|.+|+||||+. .+..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 46999999999999999 6653
No 386
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=91.51 E-value=0.081 Score=44.45 Aligned_cols=19 Identities=26% Similarity=0.490 Sum_probs=16.2
Q ss_pred EEEEECCCCCChhhHHhhh
Q 029430 102 KISLLGDCQIGKTSFVKYV 120 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~ 120 (193)
.++++|++|+|||+|++.+
T Consensus 53 ~~ll~Gp~G~GKTTLa~~i 71 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHII 71 (334)
T ss_dssp CEEEESSTTSSHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHH
Confidence 4889999999999999433
No 387
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=91.47 E-value=0.079 Score=41.04 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=18.1
Q ss_pred eeEEEEECCCCCChhhHH-hhh
Q 029430 100 SLKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~ 120 (193)
...|.++|.+|+|||||+ .+.
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~ 43 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLS 43 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 457999999999999999 654
No 388
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=91.46 E-value=0.086 Score=42.79 Aligned_cols=19 Identities=26% Similarity=0.566 Sum_probs=16.4
Q ss_pred EEEEECCCCCChhhHH-hhh
Q 029430 102 KISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~ 120 (193)
.+++.|++|+|||+|+ .+.
T Consensus 52 ~vll~G~~GtGKT~la~~la 71 (310)
T 1ofh_A 52 NILMIGPTGVGKTEIARRLA 71 (310)
T ss_dssp CEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 4889999999999999 543
No 389
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=91.43 E-value=0.083 Score=43.04 Aligned_cols=20 Identities=25% Similarity=0.225 Sum_probs=17.1
Q ss_pred eEEEEECCCCCChhhHH-hhh
Q 029430 101 LKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~ 120 (193)
--+++.|++|+|||+|+ .+.
T Consensus 55 ~~vll~Gp~GtGKT~la~~la 75 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVA 75 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHH
Confidence 36899999999999999 554
No 390
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=91.39 E-value=0.1 Score=39.78 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=19.4
Q ss_pred eeEEEEECCCCCChhhHH-hhhcC
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGN 122 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~ 122 (193)
...|.+.|..|+||||+. .+...
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 468999999999999999 66543
No 391
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=91.38 E-value=0.11 Score=42.37 Aligned_cols=20 Identities=35% Similarity=0.521 Sum_probs=17.2
Q ss_pred eEEEEECCCCCChhhHH-hhh
Q 029430 101 LKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~ 120 (193)
..+++.|++|+|||+|+ .+.
T Consensus 68 ~~vll~G~~GtGKT~la~~la 88 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALKMA 88 (309)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 46999999999999999 544
No 392
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=91.34 E-value=0.098 Score=40.99 Aligned_cols=20 Identities=30% Similarity=0.584 Sum_probs=17.3
Q ss_pred EEEEECCCCCChhhHH-hhhc
Q 029430 102 KISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~ 121 (193)
=+++.|++|+|||+|+ +++.
T Consensus 32 l~~i~G~pG~GKT~l~l~~~~ 52 (251)
T 2zts_A 32 TVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 4789999999999999 8763
No 393
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=91.32 E-value=0.079 Score=43.14 Aligned_cols=20 Identities=15% Similarity=0.180 Sum_probs=17.8
Q ss_pred EEEEECCCCCChhhHH-hhhc
Q 029430 102 KISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~ 121 (193)
-++++|.+|+|||+|+ .+..
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 5889999999999999 8774
No 394
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=91.31 E-value=0.13 Score=42.79 Aligned_cols=20 Identities=25% Similarity=0.152 Sum_probs=17.6
Q ss_pred eeEEEEECCCCCChhhHH-hh
Q 029430 100 SLKISLLGDCQIGKTSFV-KY 119 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~ 119 (193)
...|.++|.+|+|||||+ .+
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L 51 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQI 51 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 468999999999999998 54
No 395
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=91.27 E-value=0.092 Score=41.98 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=18.4
Q ss_pred eeEEEEECCCCCChhhHH-hhhc
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~ 121 (193)
...|.++|..|+|||||+ .+.+
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 356999999999999999 6544
No 396
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=91.24 E-value=0.11 Score=41.94 Aligned_cols=21 Identities=29% Similarity=0.275 Sum_probs=18.0
Q ss_pred eeEEEEECCCCCChhhHH-hhh
Q 029430 100 SLKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~ 120 (193)
...|+++|.+|+||||+. .+.
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~ 53 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQ 53 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 357999999999999999 654
No 397
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=91.23 E-value=0.034 Score=46.93 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=18.5
Q ss_pred eEEEEECCCCCChhhHH-hhhcCc
Q 029430 101 LKISLLGDCQIGKTSFV-KYVGNE 123 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~~~ 123 (193)
-.++++|.+|||||||+ .+.+..
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC--
T ss_pred CEEEEECCCCCCHHHHHHHhcccc
Confidence 37899999999999999 766543
No 398
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=91.21 E-value=0.089 Score=47.46 Aligned_cols=21 Identities=29% Similarity=0.464 Sum_probs=17.9
Q ss_pred eeEEEEECCCCCChhhHH-hhh
Q 029430 100 SLKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~ 120 (193)
.--++|+|.+|+|||||+ .+.
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LA 314 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLA 314 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHH
Confidence 356899999999999999 654
No 399
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=91.20 E-value=0.1 Score=39.34 Aligned_cols=19 Identities=26% Similarity=0.303 Sum_probs=16.8
Q ss_pred EEEEECCCCCChhhHH-hhh
Q 029430 102 KISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~ 120 (193)
.|++.|.+|+|||++. .+.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La 23 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLA 23 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 5999999999999998 654
No 400
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.12 E-value=0.1 Score=39.30 Aligned_cols=22 Identities=23% Similarity=0.187 Sum_probs=18.1
Q ss_pred eeEEEEECCCCCChhhHH-hhhc
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~ 121 (193)
...|++.|.+|+||||+. .+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999 5543
No 401
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=91.08 E-value=0.096 Score=43.85 Aligned_cols=20 Identities=35% Similarity=0.396 Sum_probs=17.4
Q ss_pred EEEEECCCCCChhhHH-hhhc
Q 029430 102 KISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~ 121 (193)
-+++.|++|+|||+|+ .+..
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~ 66 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWE 66 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999 6653
No 402
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=91.04 E-value=0.095 Score=43.44 Aligned_cols=20 Identities=25% Similarity=0.323 Sum_probs=16.9
Q ss_pred EEEEECCCCCChhhHH-hhhc
Q 029430 102 KISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~ 121 (193)
-+++.|++|+|||+|+ .+.+
T Consensus 39 ~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 4889999999999999 5543
No 403
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=91.01 E-value=0.12 Score=41.36 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=19.7
Q ss_pred eeEEEEECCCCCChhhHH-hhhcC
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVGN 122 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~~ 122 (193)
...|+++|++|+|||+|+ .+...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 356999999999999999 88754
No 404
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=90.94 E-value=0.1 Score=42.12 Aligned_cols=21 Identities=29% Similarity=0.355 Sum_probs=17.9
Q ss_pred eeEEEEECCCCCChhhHH-hhh
Q 029430 100 SLKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~ 120 (193)
...+++.|++|+|||+|+ .+.
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia 85 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIA 85 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHH
Confidence 457999999999999999 554
No 405
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=90.92 E-value=0.11 Score=40.51 Aligned_cols=20 Identities=30% Similarity=0.374 Sum_probs=17.2
Q ss_pred eEEEEECCCCCChhhHH-hhh
Q 029430 101 LKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~ 120 (193)
.-|+++|.+|+||||+. .+.
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~ 46 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELE 46 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 46899999999999999 553
No 406
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=90.74 E-value=0.11 Score=41.45 Aligned_cols=22 Identities=27% Similarity=0.261 Sum_probs=18.5
Q ss_pred eeEEEEECCCCCChhhHH-hhhc
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~ 121 (193)
..-|++.|.+|+||||++ ++..
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 467999999999999999 6543
No 407
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=90.60 E-value=0.095 Score=43.69 Aligned_cols=20 Identities=25% Similarity=0.228 Sum_probs=17.4
Q ss_pred EEEEECCCCCChhhHH-hhhc
Q 029430 102 KISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~ 121 (193)
-+++.|++|+|||+|+ .+..
T Consensus 46 ~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 46 NALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CEEECBCTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999 6653
No 408
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=90.60 E-value=0.081 Score=48.51 Aligned_cols=20 Identities=35% Similarity=0.591 Sum_probs=17.7
Q ss_pred EEEECCCCCChhhHH-hhhcC
Q 029430 103 ISLLGDCQIGKTSFV-KYVGN 122 (193)
Q Consensus 103 ivllGd~gvGKTSLl-r~~~~ 122 (193)
++++|++|+|||||+ .+.+-
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl 68 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGV 68 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSC
T ss_pred EEEECCCCChHHHHHHHHhCC
Confidence 999999999999999 66554
No 409
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=90.57 E-value=0.11 Score=44.38 Aligned_cols=21 Identities=14% Similarity=0.477 Sum_probs=18.3
Q ss_pred EEEEECCCCCChhhHH-hhhcC
Q 029430 102 KISLLGDCQIGKTSFV-KYVGN 122 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~~ 122 (193)
++.++|++|+|||+|+ .+.+.
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7999999999999999 66544
No 410
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=90.56 E-value=0.12 Score=46.62 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=18.9
Q ss_pred EEEEECCCCCChhhHHhhhcCcc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNEQ 124 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~f 124 (193)
.+.++|.+|+|||||++.+.+..
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999995555543
No 411
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=90.56 E-value=0.15 Score=46.25 Aligned_cols=23 Identities=13% Similarity=0.309 Sum_probs=18.9
Q ss_pred EEEEECCCCCChhhHHhhhcCcc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNEQ 124 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~f 124 (193)
++.++|++|+|||||++.+.+..
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 68999999999999995555543
No 412
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=90.55 E-value=0.1 Score=43.07 Aligned_cols=20 Identities=20% Similarity=0.185 Sum_probs=16.0
Q ss_pred eEEEEECCCCCChhhHH-hhh
Q 029430 101 LKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~ 120 (193)
.-+++.|++|+|||+|+ .+.
T Consensus 37 ~~lLl~GppGtGKT~la~aiA 57 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVF 57 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 35677799999999999 543
No 413
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=90.55 E-value=0.1 Score=43.51 Aligned_cols=20 Identities=35% Similarity=0.439 Sum_probs=17.3
Q ss_pred eEEEEECCCCCChhhHH-hhh
Q 029430 101 LKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~ 120 (193)
-.++++|.+|+||||++ .+.
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 46889999999999999 664
No 414
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=90.55 E-value=0.4 Score=41.68 Aligned_cols=22 Identities=18% Similarity=0.247 Sum_probs=18.5
Q ss_pred eeEEEEECCCCCChhhHH-hhhc
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~ 121 (193)
..-|+|+|.+|+||||+. ++..
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTG
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 346889999999999999 7654
No 415
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=90.51 E-value=0.15 Score=39.63 Aligned_cols=22 Identities=18% Similarity=0.385 Sum_probs=18.6
Q ss_pred eeEEEEECCCCCChhhHH-hhhc
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~ 121 (193)
.+.|++.|.+|+||||+. .+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 367999999999999999 6643
No 416
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=90.48 E-value=0.13 Score=44.97 Aligned_cols=20 Identities=30% Similarity=0.506 Sum_probs=18.7
Q ss_pred ceeeEEEEECCCCCChhhHH
Q 029430 98 LVSLKISLLGDCQIGKTSFV 117 (193)
Q Consensus 98 ~~~~KivllGd~gvGKTSLl 117 (193)
...+|++|+|.+.+||||++
T Consensus 38 ~~~~klLLLG~geSGKSTi~ 57 (402)
T 1azs_C 38 RATHRLLLLGAGESGKSTIV 57 (402)
T ss_dssp TTEEEEEEEESTTSSHHHHH
T ss_pred hccceEEEecCCCCchhhHH
Confidence 45899999999999999999
No 417
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=90.47 E-value=0.12 Score=44.41 Aligned_cols=21 Identities=19% Similarity=0.245 Sum_probs=17.7
Q ss_pred eEEEEECCCCCChhhHH-hhhc
Q 029430 101 LKISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~ 121 (193)
-.++++|.+|+|||||+ .+.+
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 36899999999999999 6543
No 418
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=90.47 E-value=0.11 Score=43.35 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=18.3
Q ss_pred eeEEEEECCCCCChhhHH-hhhc
Q 029430 100 SLKISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~~ 121 (193)
...|.++|.+|+|||||+ .+.+
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999 5543
No 419
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=90.44 E-value=0.13 Score=46.05 Aligned_cols=21 Identities=19% Similarity=0.319 Sum_probs=18.3
Q ss_pred EEEEECCCCCChhhHH-hhhcC
Q 029430 102 KISLLGDCQIGKTSFV-KYVGN 122 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~~ 122 (193)
-|+|.|.+|+|||+|+ .+...
T Consensus 149 ~v~I~G~~GiGKTtLa~~~~~~ 170 (591)
T 1z6t_A 149 WVTIHGMAGCGKSVLAAEAVRD 170 (591)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEcCCCCCHHHHHHHHHhc
Confidence 4789999999999999 88654
No 420
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=90.44 E-value=0.12 Score=44.47 Aligned_cols=20 Identities=15% Similarity=0.263 Sum_probs=17.5
Q ss_pred EEEEECCCCCChhhHH-hhhc
Q 029430 102 KISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~ 121 (193)
.++++|..|+|||||+ .+++
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 7999999999999999 6543
No 421
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=90.43 E-value=0.14 Score=41.20 Aligned_cols=21 Identities=19% Similarity=0.264 Sum_probs=18.1
Q ss_pred eeEEEEECCCCCChhhHH-hhh
Q 029430 100 SLKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~ 120 (193)
...|.++|.+|+||||++ .+.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 357999999999999999 555
No 422
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=90.42 E-value=0.15 Score=46.26 Aligned_cols=22 Identities=18% Similarity=0.397 Sum_probs=18.5
Q ss_pred EEEEECCCCCChhhHHhhhcCc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNE 123 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~ 123 (193)
++.++|++|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhc
Confidence 6899999999999999555554
No 423
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=90.42 E-value=0.15 Score=46.38 Aligned_cols=23 Identities=17% Similarity=0.231 Sum_probs=19.0
Q ss_pred EEEEECCCCCChhhHHhhhcCcc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNEQ 124 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~f 124 (193)
++.++|++|+|||||++.+.+-.
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 68999999999999995555543
No 424
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=90.39 E-value=0.12 Score=42.10 Aligned_cols=20 Identities=25% Similarity=0.383 Sum_probs=17.0
Q ss_pred eEEEEECCCCCChhhHH-hhh
Q 029430 101 LKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~ 120 (193)
--+++.|++|+|||+++ .+.
T Consensus 48 ~~~ll~G~~GtGKt~la~~la 68 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLA 68 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHH
Confidence 36899999999999999 544
No 425
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.39 E-value=0.11 Score=43.15 Aligned_cols=19 Identities=21% Similarity=0.282 Sum_probs=16.9
Q ss_pred EEEECCCCCChhhHH-hhhc
Q 029430 103 ISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 103 ivllGd~gvGKTSLl-r~~~ 121 (193)
+++.|++|+|||+|+ .+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 899999999999999 6554
No 426
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=90.34 E-value=0.17 Score=45.94 Aligned_cols=22 Identities=18% Similarity=0.362 Sum_probs=18.4
Q ss_pred EEEEECCCCCChhhHHhhhcCc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNE 123 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~ 123 (193)
++.++|++|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999555554
No 427
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=90.33 E-value=0.13 Score=41.12 Aligned_cols=21 Identities=38% Similarity=0.384 Sum_probs=16.4
Q ss_pred eeE-EEEECCCCCChhhHH-hhh
Q 029430 100 SLK-ISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 100 ~~K-ivllGd~gvGKTSLl-r~~ 120 (193)
..| |+++|.+|+||+|.. ++.
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~ 50 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLV 50 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 345 456899999999988 654
No 428
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=90.26 E-value=0.12 Score=44.28 Aligned_cols=19 Identities=26% Similarity=0.466 Sum_probs=16.9
Q ss_pred EEEEECCCCCChhhHH-hhh
Q 029430 102 KISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~ 120 (193)
.++++|.+|+|||||+ .+.
T Consensus 177 ~i~ivG~sGsGKSTll~~l~ 196 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALM 196 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 7999999999999999 544
No 429
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=90.20 E-value=0.13 Score=42.58 Aligned_cols=19 Identities=21% Similarity=0.245 Sum_probs=16.5
Q ss_pred EEEEECCCCCChhhHH-hhh
Q 029430 102 KISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~ 120 (193)
-+++.|++|+|||+|+ .+.
T Consensus 51 ~vLL~Gp~GtGKT~la~ala 70 (301)
T 3cf0_A 51 GVLFYGPPGCGKTLLAKAIA 70 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHH
T ss_pred eEEEECCCCcCHHHHHHHHH
Confidence 5899999999999999 544
No 430
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=90.14 E-value=0.12 Score=43.37 Aligned_cols=20 Identities=20% Similarity=0.270 Sum_probs=17.3
Q ss_pred eEEEEECCCCCChhhHH-hhh
Q 029430 101 LKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~ 120 (193)
--+++.|++|+|||+|+ .+.
T Consensus 71 ~~vLl~GppGtGKT~la~~la 91 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMA 91 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 46899999999999999 554
No 431
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=90.07 E-value=0.14 Score=43.38 Aligned_cols=21 Identities=24% Similarity=0.471 Sum_probs=17.4
Q ss_pred EEEEECCCCCChhhHHhhhcC
Q 029430 102 KISLLGDCQIGKTSFVKYVGN 122 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~ 122 (193)
.++++|.+|+|||||++.+.+
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g 193 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIME 193 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999944433
No 432
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.06 E-value=0.13 Score=42.53 Aligned_cols=19 Identities=26% Similarity=0.308 Sum_probs=16.7
Q ss_pred EEEECCCCCChhhHH-hhhc
Q 029430 103 ISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 103 ivllGd~gvGKTSLl-r~~~ 121 (193)
+++.|++|+|||+++ .+..
T Consensus 61 ~ll~G~~G~GKT~la~~la~ 80 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTK 80 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 899999999999999 6543
No 433
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=90.05 E-value=0.18 Score=46.04 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=19.1
Q ss_pred EEEEECCCCCChhhHHhhhcCcc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNEQ 124 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~f 124 (193)
++.++|++|+|||||++.+.+..
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCc
Confidence 68999999999999995555543
No 434
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=90.02 E-value=0.14 Score=43.08 Aligned_cols=20 Identities=30% Similarity=0.353 Sum_probs=17.4
Q ss_pred eEEEEECCCCCChhhHH-hhh
Q 029430 101 LKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~ 120 (193)
--++++|.+|+||||++ .+.
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA 125 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLA 125 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHH
Confidence 46889999999999999 765
No 435
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=90.00 E-value=0.12 Score=43.26 Aligned_cols=20 Identities=25% Similarity=0.135 Sum_probs=17.5
Q ss_pred EEEEECCCCCChhhHH-hhhc
Q 029430 102 KISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~ 121 (193)
-+++.|++|+|||+|+ .+..
T Consensus 47 ~vll~G~~G~GKT~la~~l~~ 67 (384)
T 2qby_B 47 SNLFLGLTGTGKTFVSKYIFN 67 (384)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999 6654
No 436
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=89.97 E-value=0.14 Score=45.23 Aligned_cols=20 Identities=25% Similarity=0.381 Sum_probs=17.1
Q ss_pred eEEEEECCCCCChhhHH-hhh
Q 029430 101 LKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~ 120 (193)
-.++++|++|||||+|+ .+.
T Consensus 202 ~~~LL~G~pG~GKT~la~~la 222 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAEGLA 222 (468)
T ss_dssp CEEEEESCTTTTTHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHH
Confidence 36899999999999999 554
No 437
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=89.96 E-value=0.15 Score=41.62 Aligned_cols=21 Identities=19% Similarity=0.368 Sum_probs=18.3
Q ss_pred eEEEEECCCCCChhhHH-hhhc
Q 029430 101 LKISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~ 121 (193)
.-|++.|.+|+||||+. ++..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999 7764
No 438
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=89.92 E-value=0.14 Score=43.41 Aligned_cols=20 Identities=20% Similarity=0.371 Sum_probs=17.5
Q ss_pred eeEEEEECCCCCChhhHH-hh
Q 029430 100 SLKISLLGDCQIGKTSFV-KY 119 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~ 119 (193)
.+=|.++|.+|+|||||+ .+
T Consensus 92 p~iigI~GpsGSGKSTl~~~L 112 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVL 112 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHH
Confidence 367899999999999999 55
No 439
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=89.91 E-value=0.15 Score=42.35 Aligned_cols=19 Identities=26% Similarity=0.399 Sum_probs=16.6
Q ss_pred EEEEECCCCCChhhHH-hhh
Q 029430 102 KISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~ 120 (193)
.+++.|++|+|||+|+ .+.
T Consensus 57 ~vll~G~~GtGKT~la~~ia 76 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIIS 76 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHH
Confidence 4899999999999999 553
No 440
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=89.89 E-value=0.18 Score=40.60 Aligned_cols=21 Identities=38% Similarity=0.502 Sum_probs=18.1
Q ss_pred eeEEEEECCCCCChhhHH-hhh
Q 029430 100 SLKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~ 120 (193)
...|++.|..|+||||++ .+.
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~ 45 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILK 45 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTG
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 367999999999999999 554
No 441
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=89.85 E-value=0.18 Score=37.40 Aligned_cols=20 Identities=25% Similarity=0.326 Sum_probs=17.1
Q ss_pred eEEEEECCCCCChhhHH-hhh
Q 029430 101 LKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~ 120 (193)
-.|+|.|.+|+||||+. .+.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La 28 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELG 28 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 36899999999999999 654
No 442
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.83 E-value=0.14 Score=42.84 Aligned_cols=19 Identities=26% Similarity=0.317 Sum_probs=16.8
Q ss_pred EEEECCCCCChhhHH-hhhc
Q 029430 103 ISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 103 ivllGd~gvGKTSLl-r~~~ 121 (193)
+++.|++|+|||+++ .+.+
T Consensus 49 ~ll~Gp~G~GKTtla~~la~ 68 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAR 68 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 899999999999999 6654
No 443
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=89.78 E-value=0.2 Score=45.57 Aligned_cols=23 Identities=17% Similarity=0.410 Sum_probs=19.0
Q ss_pred EEEEECCCCCChhhHHhhhcCcc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNEQ 124 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~f 124 (193)
++.++|++|+|||||++.+.+..
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 68999999999999995555543
No 444
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=89.60 E-value=0.14 Score=41.70 Aligned_cols=20 Identities=25% Similarity=0.212 Sum_probs=17.3
Q ss_pred eEEEEECCCCCChhhHH-hhh
Q 029430 101 LKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~ 120 (193)
-.|+++|.+|+||||+. .+.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La 69 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMA 69 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 46999999999999998 553
No 445
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=89.56 E-value=0.15 Score=45.01 Aligned_cols=21 Identities=14% Similarity=0.392 Sum_probs=18.0
Q ss_pred EEEEECCCCCChhhHH-hhhcC
Q 029430 102 KISLLGDCQIGKTSFV-KYVGN 122 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~~ 122 (193)
++.++|++|+|||+|+ .+.+.
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 7899999999999999 55543
No 446
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=89.43 E-value=0.17 Score=40.51 Aligned_cols=20 Identities=15% Similarity=0.315 Sum_probs=16.8
Q ss_pred eEEEEECCCCCChhhHH-hhh
Q 029430 101 LKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~ 120 (193)
.-+++.|++|+|||+|+ .+.
T Consensus 30 ~~vll~G~~GtGKt~la~~i~ 50 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLH 50 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHH
T ss_pred CCEEEECCCCCcHHHHHHHHH
Confidence 35899999999999999 443
No 447
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=89.42 E-value=0.16 Score=42.62 Aligned_cols=20 Identities=25% Similarity=0.266 Sum_probs=17.4
Q ss_pred eEEEEECCCCCChhhHH-hhh
Q 029430 101 LKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~ 120 (193)
--+++.|++|+|||+|+ .+.
T Consensus 46 ~~iLL~GppGtGKT~la~ala 66 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVA 66 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHH
Confidence 46899999999999999 655
No 448
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=89.42 E-value=0.13 Score=43.14 Aligned_cols=20 Identities=25% Similarity=0.325 Sum_probs=17.4
Q ss_pred EEEECCCCCChhhHH-hhhcC
Q 029430 103 ISLLGDCQIGKTSFV-KYVGN 122 (193)
Q Consensus 103 ivllGd~gvGKTSLl-r~~~~ 122 (193)
++++|..|+|||||+ .+.+.
T Consensus 7 ~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 7 TLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEecCCCCHHHHHHHHHhh
Confidence 678999999999999 77754
No 449
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=89.37 E-value=0.16 Score=42.34 Aligned_cols=20 Identities=25% Similarity=0.235 Sum_probs=17.4
Q ss_pred eEEEEECCCCCChhhHH-hhh
Q 029430 101 LKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~ 120 (193)
..+++.|++|+|||+|+ .+.
T Consensus 52 ~~vLl~GppGtGKT~la~aia 72 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVA 72 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHH
Confidence 46999999999999999 554
No 450
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=89.20 E-value=0.078 Score=42.52 Aligned_cols=18 Identities=28% Similarity=0.351 Sum_probs=15.9
Q ss_pred EEEECCCCCChhhHH-hhh
Q 029430 103 ISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 103 ivllGd~gvGKTSLl-r~~ 120 (193)
+++.|++|+|||+|+ .+.
T Consensus 47 vll~G~~GtGKT~la~~la 65 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVA 65 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 789999999999999 554
No 451
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=89.04 E-value=0.14 Score=42.00 Aligned_cols=19 Identities=26% Similarity=0.448 Sum_probs=16.6
Q ss_pred EEEEECCCCCChhhHH-hhh
Q 029430 102 KISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~ 120 (193)
.+++.|++|+|||+|+ .+.
T Consensus 40 ~vll~G~~GtGKT~la~~i~ 59 (324)
T 1hqc_A 40 HLLLFGPPGLGKTTLAHVIA 59 (324)
T ss_dssp CCEEECCTTCCCHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 5899999999999999 553
No 452
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=88.98 E-value=0.2 Score=42.89 Aligned_cols=20 Identities=20% Similarity=0.400 Sum_probs=17.5
Q ss_pred EEEEECCCCCChhhHH-hhhc
Q 029430 102 KISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~ 121 (193)
-|+|+|..|+|||+|. .+..
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999 7654
No 453
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=88.95 E-value=0.18 Score=45.25 Aligned_cols=21 Identities=19% Similarity=0.283 Sum_probs=18.0
Q ss_pred eEEEEECCCCCChhhHH-hhhc
Q 029430 101 LKISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~ 121 (193)
--|.++|.+|+|||+|+ .+.+
T Consensus 153 ~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 153 FFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 34789999999999999 7764
No 454
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=88.91 E-value=0.19 Score=42.56 Aligned_cols=20 Identities=30% Similarity=0.370 Sum_probs=16.8
Q ss_pred eEEEEECCCCCChhhHH-hhh
Q 029430 101 LKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~ 120 (193)
..+++.|++|+|||+|+ .+.
T Consensus 73 ~~ill~Gp~GtGKT~la~~la 93 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLA 93 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHH
Confidence 35899999999999998 543
No 455
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=88.88 E-value=0.21 Score=45.81 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=18.9
Q ss_pred EEEEECCCCCChhhHHhhhcCcc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNEQ 124 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~f 124 (193)
.+.++|.+|+|||||++.+.+..
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 68999999999999995555543
No 456
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=88.75 E-value=0.2 Score=39.23 Aligned_cols=22 Identities=18% Similarity=0.520 Sum_probs=18.8
Q ss_pred eEEEEECCCCCChhhHH-hhhcC
Q 029430 101 LKISLLGDCQIGKTSFV-KYVGN 122 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~~ 122 (193)
.=+++.|++|+|||+|. .++..
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 35899999999999999 87654
No 457
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=88.68 E-value=0.25 Score=40.53 Aligned_cols=21 Identities=24% Similarity=0.270 Sum_probs=18.5
Q ss_pred eeEEEEECCCCCChhhHH-hhh
Q 029430 100 SLKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~ 120 (193)
.+.|+|.|.+|+||||+. .+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999 664
No 458
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=88.67 E-value=0.17 Score=44.96 Aligned_cols=21 Identities=29% Similarity=0.561 Sum_probs=17.4
Q ss_pred EEEEECCCCCChhhHHhhhcC
Q 029430 102 KISLLGDCQIGKTSFVKYVGN 122 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~ 122 (193)
.++++|..|+|||||++.+.+
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~G 160 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCS 160 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999944433
No 459
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=88.67 E-value=0.21 Score=45.17 Aligned_cols=22 Identities=32% Similarity=0.588 Sum_probs=18.1
Q ss_pred EEEEECCCCCChhhHHhhhcCc
Q 029430 102 KISLLGDCQIGKTSFVKYVGNE 123 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~~ 123 (193)
-+.++|..|+|||||++.+.+.
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5789999999999999555553
No 460
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=88.65 E-value=0.2 Score=40.77 Aligned_cols=19 Identities=21% Similarity=0.294 Sum_probs=17.0
Q ss_pred EEEECCCCCChhhHH-hhhc
Q 029430 103 ISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 103 ivllGd~gvGKTSLl-r~~~ 121 (193)
+++.|++|+|||+++ .+..
T Consensus 49 ~ll~G~~G~GKT~la~~l~~ 68 (327)
T 1iqp_A 49 LLFAGPPGVGKTTAALALAR 68 (327)
T ss_dssp EEEESCTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHH
Confidence 999999999999999 6654
No 461
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=88.60 E-value=0.2 Score=46.11 Aligned_cols=21 Identities=29% Similarity=0.518 Sum_probs=17.7
Q ss_pred EEEEECCCCCChhhHHhhhcC
Q 029430 102 KISLLGDCQIGKTSFVKYVGN 122 (193)
Q Consensus 102 KivllGd~gvGKTSLlr~~~~ 122 (193)
.+.++|++|+|||||++.+.+
T Consensus 105 i~~LvGpNGaGKSTLLkiL~G 125 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAG 125 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHhc
Confidence 689999999999999954444
No 462
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=88.58 E-value=0.2 Score=41.83 Aligned_cols=21 Identities=29% Similarity=0.445 Sum_probs=17.8
Q ss_pred eeEEEEECCCCCChhhHH-hhh
Q 029430 100 SLKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~ 120 (193)
.-.+++.|++|+|||.|+ .+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia 173 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMA 173 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 357999999999999998 554
No 463
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=88.55 E-value=0.2 Score=41.71 Aligned_cols=20 Identities=25% Similarity=0.263 Sum_probs=17.1
Q ss_pred EEEEECCCCCChhhHH-hhhc
Q 029430 102 KISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~ 121 (193)
-+++.|++|+|||+++ .+..
T Consensus 40 ~~ll~G~~G~GKT~la~~la~ 60 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAK 60 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999 6653
No 464
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=88.49 E-value=0.16 Score=42.98 Aligned_cols=20 Identities=30% Similarity=0.444 Sum_probs=16.3
Q ss_pred EEEE--ECCCCCChhhHH-hhhc
Q 029430 102 KISL--LGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 102 Kivl--lGd~gvGKTSLl-r~~~ 121 (193)
-+++ .|++|+|||+|+ .+..
T Consensus 52 ~~li~i~G~~G~GKT~L~~~~~~ 74 (412)
T 1w5s_A 52 NMIYGSIGRVGIGKTTLAKFTVK 74 (412)
T ss_dssp EEEEECTTCCSSSHHHHHHHHHH
T ss_pred EEEEeCcCcCCCCHHHHHHHHHH
Confidence 4556 799999999999 7654
No 465
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=88.47 E-value=0.14 Score=42.45 Aligned_cols=19 Identities=26% Similarity=0.436 Sum_probs=16.5
Q ss_pred EEEEECCCCCChhhHH-hhh
Q 029430 102 KISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~ 120 (193)
.+++.|++|+|||+|+ .+.
T Consensus 47 ~vLl~G~~GtGKT~la~~la 66 (350)
T 1g8p_A 47 GVLVFGDRGTGKSTAVRALA 66 (350)
T ss_dssp CEEEECCGGGCTTHHHHHHH
T ss_pred eEEEECCCCccHHHHHHHHH
Confidence 3999999999999999 554
No 466
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=88.46 E-value=0.2 Score=44.00 Aligned_cols=20 Identities=20% Similarity=0.197 Sum_probs=17.3
Q ss_pred EEEEECCCCCChhhHH-hhhc
Q 029430 102 KISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~ 121 (193)
-++++|..|+|||||+ .+++
T Consensus 169 ii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHh
Confidence 4899999999999999 6554
No 467
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=88.42 E-value=0.22 Score=42.43 Aligned_cols=20 Identities=20% Similarity=0.365 Sum_probs=17.3
Q ss_pred EEEEECCCCCChhhHH-hhhc
Q 029430 102 KISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~ 121 (193)
-|+++|++|+|||+|. .+..
T Consensus 5 ~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH
Confidence 4788999999999999 7754
No 468
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=88.39 E-value=0.24 Score=36.77 Aligned_cols=15 Identities=27% Similarity=0.465 Sum_probs=14.0
Q ss_pred EEEECCCCCChhhHH
Q 029430 103 ISLLGDCQIGKTSFV 117 (193)
Q Consensus 103 ivllGd~gvGKTSLl 117 (193)
.+++|+.|+|||+|+
T Consensus 26 ~~I~G~NGsGKStil 40 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLL 40 (149)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 579999999999999
No 469
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=88.34 E-value=0.19 Score=42.83 Aligned_cols=21 Identities=19% Similarity=0.276 Sum_probs=18.0
Q ss_pred eEEEEECCCCCChhhHH-hhhc
Q 029430 101 LKISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~ 121 (193)
--+.++|++|+|||+|+ .+..
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~ 153 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAV 153 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999 7764
No 470
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=88.29 E-value=0.26 Score=41.46 Aligned_cols=18 Identities=22% Similarity=0.385 Sum_probs=14.3
Q ss_pred EEEEECCCCCChhhHH-hh
Q 029430 102 KISLLGDCQIGKTSFV-KY 119 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~ 119 (193)
-|.+-|.+||||||.. .+
T Consensus 50 VIAIaGKGGVGKTTtavNL 68 (314)
T 3fwy_A 50 VFAVYGKGGIGKSTTSSNL 68 (314)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHH
Confidence 3455699999999987 65
No 471
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=88.28 E-value=0.21 Score=42.31 Aligned_cols=21 Identities=29% Similarity=0.173 Sum_probs=17.7
Q ss_pred eeEEEEECCCCCChhhHH-hhh
Q 029430 100 SLKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~ 120 (193)
...++|.|++|+|||+|+ .+.
T Consensus 117 ~~~vLl~GppGtGKT~la~aia 138 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIA 138 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 346999999999999999 554
No 472
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.28 E-value=0.22 Score=40.53 Aligned_cols=19 Identities=32% Similarity=0.268 Sum_probs=16.9
Q ss_pred EEEECCCCCChhhHH-hhhc
Q 029430 103 ISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 103 ivllGd~gvGKTSLl-r~~~ 121 (193)
+++.|++|+|||+++ .+..
T Consensus 45 ~ll~G~~G~GKt~la~~l~~ 64 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAH 64 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHH
Confidence 899999999999999 6654
No 473
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=88.24 E-value=0.26 Score=39.88 Aligned_cols=21 Identities=29% Similarity=0.365 Sum_probs=18.4
Q ss_pred eeEEEEECCCCCChhhHH-hhh
Q 029430 100 SLKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~ 120 (193)
.+.|.+.|.+|+||||+. .+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999 654
No 474
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=88.22 E-value=0.23 Score=41.27 Aligned_cols=20 Identities=20% Similarity=0.346 Sum_probs=16.7
Q ss_pred eEEEEECCCCCChhhHHhhh
Q 029430 101 LKISLLGDCQIGKTSFVKYV 120 (193)
Q Consensus 101 ~KivllGd~gvGKTSLlr~~ 120 (193)
..|++.|++|+|||.+++.+
T Consensus 26 ~~vLi~Ge~GtGKt~lAr~i 45 (304)
T 1ojl_A 26 ATVLIHGDSGTGKELVARAL 45 (304)
T ss_dssp SCEEEESCTTSCHHHHHHHH
T ss_pred CcEEEECCCCchHHHHHHHH
Confidence 35899999999999999443
No 475
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=88.13 E-value=0.24 Score=41.38 Aligned_cols=20 Identities=25% Similarity=0.336 Sum_probs=17.5
Q ss_pred EEEEECCCCCChhhHH-hhhc
Q 029430 102 KISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~ 121 (193)
=+++.|.+|+|||+|+ ++..
T Consensus 70 l~li~G~pG~GKTtl~l~ia~ 90 (315)
T 3bh0_A 70 FVLIAARPSMGKTAFALKQAK 90 (315)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 3789999999999999 8763
No 476
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=88.12 E-value=0.22 Score=42.31 Aligned_cols=20 Identities=25% Similarity=0.235 Sum_probs=17.0
Q ss_pred eEEEEECCCCCChhhHH-hhh
Q 029430 101 LKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~ 120 (193)
--|+|.|++|+|||+|+ .+.
T Consensus 85 ~~iLL~GppGtGKT~la~ala 105 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVA 105 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHH
Confidence 35899999999999999 554
No 477
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=88.09 E-value=0.2 Score=44.09 Aligned_cols=21 Identities=33% Similarity=0.234 Sum_probs=18.5
Q ss_pred eEEEEECCCCCChhhHH-hhhc
Q 029430 101 LKISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~ 121 (193)
..|+++|.+||||||++ ++..
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~ 121 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLAR 121 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999 8765
No 478
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=88.05 E-value=0.22 Score=40.35 Aligned_cols=19 Identities=21% Similarity=0.209 Sum_probs=16.9
Q ss_pred EEEECCCCCChhhHH-hhhc
Q 029430 103 ISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 103 ivllGd~gvGKTSLl-r~~~ 121 (193)
+++.|++|+|||+++ .+..
T Consensus 41 ~ll~G~~G~GKt~la~~l~~ 60 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIALAR 60 (319)
T ss_dssp EEEESSSSSSHHHHHHHHHH
T ss_pred EEEECcCCcCHHHHHHHHHH
Confidence 899999999999999 6654
No 479
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=88.05 E-value=0.26 Score=38.97 Aligned_cols=23 Identities=17% Similarity=0.320 Sum_probs=19.1
Q ss_pred eeeEEEEECCCCCChhhHH-hhhc
Q 029430 99 VSLKISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 99 ~~~KivllGd~gvGKTSLl-r~~~ 121 (193)
....|.++|..|+|||++. .+..
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999 6553
No 480
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=88.04 E-value=0.15 Score=42.22 Aligned_cols=19 Identities=32% Similarity=0.195 Sum_probs=16.6
Q ss_pred EEEEECCCCCChhhHH-hhh
Q 029430 102 KISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~ 120 (193)
.+++.|++|+|||+|+ .+.
T Consensus 48 ~vll~G~pGtGKT~la~~la 67 (331)
T 2r44_A 48 HILLEGVPGLAKTLSVNTLA 67 (331)
T ss_dssp CEEEESCCCHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHH
Confidence 5899999999999999 543
No 481
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=87.89 E-value=0.25 Score=41.74 Aligned_cols=17 Identities=35% Similarity=0.438 Sum_probs=15.5
Q ss_pred eEEEEECCCCCChhhHH
Q 029430 101 LKISLLGDCQIGKTSFV 117 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl 117 (193)
..+++.|++|+|||+++
T Consensus 52 ~~vll~GppGtGKT~la 68 (363)
T 3hws_A 52 SNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 35899999999999998
No 482
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=87.88 E-value=0.17 Score=40.54 Aligned_cols=19 Identities=21% Similarity=0.482 Sum_probs=15.9
Q ss_pred EEEEECCCCCChhhHH-hhh
Q 029430 102 KISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~ 120 (193)
.+++.|++|+|||+++ .++
T Consensus 60 ~ili~GPPGtGKTt~a~ala 79 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFI 79 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 5999999999999876 443
No 483
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=87.80 E-value=0.24 Score=42.11 Aligned_cols=20 Identities=30% Similarity=0.406 Sum_probs=17.4
Q ss_pred eEEEEECCCCCChhhHH-hhh
Q 029430 101 LKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~ 120 (193)
..|+++|.+|+|||+|. .+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La 26 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALA 26 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 36899999999999998 664
No 484
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=87.75 E-value=0.22 Score=43.38 Aligned_cols=19 Identities=21% Similarity=0.468 Sum_probs=17.1
Q ss_pred EEEEECCCCCChhhHH-hhh
Q 029430 102 KISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~ 120 (193)
-+.|+|++|+|||+|+ .++
T Consensus 180 i~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHH
Confidence 4789999999999999 775
No 485
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=87.63 E-value=0.24 Score=44.55 Aligned_cols=20 Identities=20% Similarity=0.306 Sum_probs=17.3
Q ss_pred EEEEECCCCCChhhHH-hhhc
Q 029430 102 KISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~ 121 (193)
.++++|..|+|||||+ .+++
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~ 282 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMM 282 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGG
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 4999999999999999 5543
No 486
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=87.52 E-value=0.26 Score=42.11 Aligned_cols=20 Identities=25% Similarity=0.235 Sum_probs=17.4
Q ss_pred eEEEEECCCCCChhhHH-hhh
Q 029430 101 LKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~ 120 (193)
.-++|.|++|+|||+|+ .+.
T Consensus 149 ~~vLL~GppGtGKT~la~aia 169 (389)
T 3vfd_A 149 RGLLLFGPPGNGKTMLAKAVA 169 (389)
T ss_dssp SEEEEESSTTSCHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 46999999999999999 553
No 487
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=87.49 E-value=0.25 Score=42.77 Aligned_cols=20 Identities=20% Similarity=0.217 Sum_probs=17.2
Q ss_pred eEEEEECCCCCChhhHH-hhh
Q 029430 101 LKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~ 120 (193)
--++++|.+|+|||||+ .+.
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~ 190 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALL 190 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 36899999999999999 554
No 488
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=87.44 E-value=0.26 Score=37.95 Aligned_cols=19 Identities=26% Similarity=0.368 Sum_probs=16.4
Q ss_pred EEEECCCCCChhhHH-hhhc
Q 029430 103 ISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 103 ivllGd~gvGKTSLl-r~~~ 121 (193)
+++.|+.|+|||+++ +.+.
T Consensus 6 ~vi~G~~gsGKTT~ll~~~~ 25 (184)
T 2orw_A 6 TVITGPMYSGKTTELLSFVE 25 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 678999999999998 7663
No 489
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=87.39 E-value=0.29 Score=38.14 Aligned_cols=20 Identities=25% Similarity=0.532 Sum_probs=18.1
Q ss_pred EEEECCCCCChhhHH-hhhcC
Q 029430 103 ISLLGDCQIGKTSFV-KYVGN 122 (193)
Q Consensus 103 ivllGd~gvGKTSLl-r~~~~ 122 (193)
++++|.+++|||+|. ++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 689999999999999 88855
No 490
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=87.37 E-value=0.27 Score=42.04 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=17.8
Q ss_pred eEEEEECCCCCChhhHH-hhhc
Q 029430 101 LKISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~~ 121 (193)
.-|++.|.+|+|||+|. .+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 35899999999999999 7653
No 491
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=87.36 E-value=0.26 Score=41.80 Aligned_cols=20 Identities=30% Similarity=0.411 Sum_probs=17.2
Q ss_pred EEEEECCCCCChhhHH-hhhc
Q 029430 102 KISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~ 121 (193)
-|+++|.+|+|||+|. .+..
T Consensus 12 ~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 4789999999999999 7753
No 492
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=87.24 E-value=0.26 Score=44.13 Aligned_cols=19 Identities=26% Similarity=0.419 Sum_probs=16.3
Q ss_pred EEEEECCCCCChhhHH-hhh
Q 029430 102 KISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~ 120 (193)
-+.++|.+|+|||||+ .+.
T Consensus 31 ~~~liG~nGsGKSTLl~~l~ 50 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFV 50 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHh
Confidence 5789999999999999 544
No 493
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.23 E-value=0.27 Score=43.37 Aligned_cols=19 Identities=32% Similarity=0.352 Sum_probs=16.7
Q ss_pred EEEEECCCCCChhhHH-hhh
Q 029430 102 KISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~ 120 (193)
-|+|.|++|+|||+|+ .+.
T Consensus 208 GiLL~GPPGtGKT~lakAiA 227 (428)
T 4b4t_K 208 GVLLYGPPGTGKTMLVKAVA 227 (428)
T ss_dssp EEEEESCTTTTHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 4999999999999999 544
No 494
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=87.21 E-value=0.27 Score=41.44 Aligned_cols=20 Identities=30% Similarity=0.277 Sum_probs=17.0
Q ss_pred eEEEEECCCCCChhhHH-hhh
Q 029430 101 LKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 101 ~KivllGd~gvGKTSLl-r~~ 120 (193)
--|+++|.+|+||||++ .+.
T Consensus 106 ~vI~ivG~~G~GKTT~~~~LA 126 (320)
T 1zu4_A 106 NIFMLVGVNGTGKTTSLAKMA 126 (320)
T ss_dssp EEEEEESSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 45889999999999999 664
No 495
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=87.09 E-value=0.25 Score=44.16 Aligned_cols=18 Identities=28% Similarity=0.495 Sum_probs=0.0
Q ss_pred EEEECCCCCChhhHH-hhh
Q 029430 103 ISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 103 ivllGd~gvGKTSLl-r~~ 120 (193)
++++|++|+|||+|+ .|+
T Consensus 42 ~~l~G~nGsGKSTL~~~~l 60 (525)
T 1tf7_A 42 TLVSGTSGTGKTLFSIQFL 60 (525)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
No 496
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=86.97 E-value=0.33 Score=36.94 Aligned_cols=20 Identities=20% Similarity=0.355 Sum_probs=17.1
Q ss_pred EEEEECCCCCChhhHH-hhhc
Q 029430 102 KISLLGDCQIGKTSFV-KYVG 121 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~~ 121 (193)
.|.+.|.+|+|||++. .+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 6889999999999999 6543
No 497
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=86.97 E-value=0.27 Score=43.09 Aligned_cols=19 Identities=21% Similarity=0.399 Sum_probs=16.5
Q ss_pred EEEEECCCCCChhhHH-hhh
Q 029430 102 KISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~ 120 (193)
-+++.|++|+|||+|+ .+.
T Consensus 132 ~lll~Gp~G~GKTtLa~aia 151 (440)
T 2z4s_A 132 PLFIYGGVGLGKTHLLQSIG 151 (440)
T ss_dssp CEEEECSSSSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 5899999999999999 543
No 498
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=86.94 E-value=0.27 Score=43.30 Aligned_cols=19 Identities=26% Similarity=0.333 Sum_probs=16.5
Q ss_pred EEEEECCCCCChhhHH-hhh
Q 029430 102 KISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 102 KivllGd~gvGKTSLl-r~~ 120 (193)
-++|.|++|+|||+|+ .+.
T Consensus 52 ~vLL~GppGtGKTtlAr~ia 71 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIA 71 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 5899999999999999 443
No 499
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=86.89 E-value=0.26 Score=43.56 Aligned_cols=21 Identities=33% Similarity=0.354 Sum_probs=18.3
Q ss_pred eeEEEEECCCCCChhhHH-hhh
Q 029430 100 SLKISLLGDCQIGKTSFV-KYV 120 (193)
Q Consensus 100 ~~KivllGd~gvGKTSLl-r~~ 120 (193)
..-|+++|.+|+||||++ ++.
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA 118 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLA 118 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 357899999999999999 775
No 500
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=86.73 E-value=0.3 Score=44.67 Aligned_cols=24 Identities=17% Similarity=0.481 Sum_probs=19.5
Q ss_pred eEEEEECCCCCChhhHHhhhcCcc
Q 029430 101 LKISLLGDCQIGKTSFVKYVGNEQ 124 (193)
Q Consensus 101 ~KivllGd~gvGKTSLlr~~~~~f 124 (193)
..|+++|++|+|||.|++++....
T Consensus 328 ~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 328 IHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp CCEEEEESSCCTHHHHHHSSSTTC
T ss_pred cceEEECCCchHHHHHHHHHHHhC
Confidence 479999999999999995555443
Done!