BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029431
(193 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1V8G|A Chain A, Crystal Structure Of Anthranilate
Phosphoribosyltransferase (Trpd) From Thermus
Thermophilus Hb8
pdb|1V8G|B Chain B, Crystal Structure Of Anthranilate
Phosphoribosyltransferase (Trpd) From Thermus
Thermophilus Hb8
pdb|2ELC|A Chain A, Crystal Structure Of Ttha1842 From Thermus Thermophilus
Hb8
pdb|2ELC|B Chain B, Crystal Structure Of Ttha1842 From Thermus Thermophilus
Hb8
pdb|2ELC|C Chain C, Crystal Structure Of Ttha1842 From Thermus Thermophilus
Hb8
pdb|2ELC|D Chain D, Crystal Structure Of Ttha1842 From Thermus Thermophilus
Hb8
Length = 329
Score = 122 bits (306), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 73/177 (41%), Positives = 105/177 (59%), Gaps = 6/177 (3%)
Query: 6 YHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKR 65
+HPAM+ V PVR +L V+TVFN+LGP+ NPA V+GV++ + MA AL+R G R
Sbjct: 153 FHPAMRHVAPVRAELGVRTVFNLLGPLTNPAGADAYVLGVFSPEWLAPMAEALERLG-AR 211
Query: 66 ALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVL 125
LVVH EG DE+ LG +++V + ++ P + G+ R LE+L+GGGP NA +
Sbjct: 212 GLVVHGEGADELV-LGENRVVEVGKGA---YALTPEEVGLKRAPLEALKGGGPEENAALA 267
Query: 126 RRVLSG-ERGXXXXXXXXXXXXXXXVSCKVNTLAEGVALAREIQLSGKALNTLDLWI 181
RR+L G E+G + K +L EGVALARE+ SG+A L+ ++
Sbjct: 268 RRLLKGEEKGPLADAVALAAGAGFYAAGKTPSLKEGVALAREVLASGEAYLLLERYV 324
>pdb|1KGZ|A Chain A, Crystal Structure Analysis Of The Anthranilate
Phosphoribosyltransferase From Erwinia Carotovora
(current Name, Pectobacterium Carotovorum)
pdb|1KGZ|B Chain B, Crystal Structure Analysis Of The Anthranilate
Phosphoribosyltransferase From Erwinia Carotovora
(current Name, Pectobacterium Carotovorum)
pdb|1KHD|A Chain A, Crystal Structure Analysis Of The Anthranilate
Phosphoribosyltransferase From Erwinia Carotovora At 1.9
Resolution (Current Name, Pectobacterium Carotovorum)
pdb|1KHD|B Chain B, Crystal Structure Analysis Of The Anthranilate
Phosphoribosyltransferase From Erwinia Carotovora At 1.9
Resolution (Current Name, Pectobacterium Carotovorum)
pdb|1KHD|C Chain C, Crystal Structure Analysis Of The Anthranilate
Phosphoribosyltransferase From Erwinia Carotovora At 1.9
Resolution (Current Name, Pectobacterium Carotovorum)
pdb|1KHD|D Chain D, Crystal Structure Analysis Of The Anthranilate
Phosphoribosyltransferase From Erwinia Carotovora At 1.9
Resolution (Current Name, Pectobacterium Carotovorum)
Length = 345
Score = 117 bits (294), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 53/132 (40%), Positives = 85/132 (64%)
Query: 1 MMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQR 60
+ + +YH + PVR++LK +T+FN+LGP++NPA P A++GVY+ LVL +A AL+
Sbjct: 162 LFAPQYHTGFRHAMPVRQQLKTRTIFNVLGPLINPARPPKALIGVYSPELVLPIAQALKV 221
Query: 61 FGLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAY 120
G K A VVH G+DE++ P + ++ +IE + P D+G+ +L +LQGG P
Sbjct: 222 LGYKNAAVVHGGGMDEVAIHTPTQVAELNNGEIESYQLSPQDFGLQSYSLNALQGGTPEE 281
Query: 121 NAEVLRRVLSGE 132
N ++L R+L G+
Sbjct: 282 NRDILARLLQGK 293
>pdb|4HKM|A Chain A, Crystal Structure Of An Anthranilate
Phosphoribosyltransferase (Target Id Nysgrc-016600) From
Xanthomonas Campestris
pdb|4HKM|B Chain B, Crystal Structure Of An Anthranilate
Phosphoribosyltransferase (Target Id Nysgrc-016600) From
Xanthomonas Campestris
Length = 346
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 98/186 (52%), Gaps = 3/186 (1%)
Query: 6 YHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKR 65
+HPA K V PVR++ V+T+FNILGP+ NPA P + GV++ +LV A LQ G +R
Sbjct: 160 HHPAXKVVAPVRREXGVRTIFNILGPLTNPAGSPNILXGVFHPDLVGIQARVLQELGAER 219
Query: 66 ALVVHS-EGLDEMSPLGPG-LILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAE 123
ALVV +G DE+S LG G L+ ++ ++ + P D+GI +L+ A +
Sbjct: 220 ALVVWGRDGXDELS-LGAGTLVGELRDGQVHEYEVHPEDFGIAXSASRNLKVADAAESRA 278
Query: 124 VLRRVLSGERGXXXXXXXXXXXXXXXVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEV 183
L +VL G V+ +++A+G+ AR++ G A LD ++
Sbjct: 279 XLLQVLDNVPGPALDIVALNAGAALYVAGVADSIADGIVRARQVLADGSARACLDAYVAF 338
Query: 184 SKGAPA 189
++ A A
Sbjct: 339 TQQATA 344
>pdb|1VQU|A Chain A, Crystal Structure Of Anthranilate
Phosphoribosyltransferase 2 (17130499) From Nostoc Sp.
At 1.85 A Resolution
pdb|1VQU|B Chain B, Crystal Structure Of Anthranilate
Phosphoribosyltransferase 2 (17130499) From Nostoc Sp.
At 1.85 A Resolution
Length = 374
Score = 83.6 bits (205), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 94/175 (53%), Gaps = 10/175 (5%)
Query: 6 YHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKR 65
+HPA+K V +R+ L+++TVFN+LGP++NP VVG++ L+ +A AL G ++
Sbjct: 190 WHPALKAVATLRRTLRIRTVFNLLGPLVNPLRPTGQVVGLFTPKLLTTVAQALDNLGKQK 249
Query: 66 ALVVHS-EGLDEMSPLGPGLILD---VTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYN 121
A+V+H E LDE G G + D ++ +++ + +P + G+ + +L+GG N
Sbjct: 250 AIVLHGRERLDEA---GLGDLTDLAVLSDGELQLTTINPQEVGVTPAPIGALRGGDVQEN 306
Query: 122 AEVLRRVLSGERGXXXXXXXXXXXXXXXVSCKVNTL---AEGVALAREIQLSGKA 173
AE+L+ VL G+ L A+GV++A+EI +G A
Sbjct: 307 AEILKAVLQGKGTQAQQDAVALNAALALQVAGAVPLLDHAQGVSVAKEILQTGTA 361
>pdb|1O17|A Chain A, Anthranilate Phosphoribosyl-Transferase (Trpd)
pdb|1O17|B Chain B, Anthranilate Phosphoribosyl-Transferase (Trpd)
pdb|1O17|C Chain C, Anthranilate Phosphoribosyl-Transferase (Trpd)
pdb|1O17|D Chain D, Anthranilate Phosphoribosyl-Transferase (Trpd)
pdb|1GXB|A Chain A, Anthranilate Phosphoribosyltransferase In Complex With
Pyrophosphate And Magnesium
pdb|1GXB|B Chain B, Anthranilate Phosphoribosyltransferase In Complex With
Pyrophosphate And Magnesium
pdb|1GXB|C Chain C, Anthranilate Phosphoribosyltransferase In Complex With
Pyrophosphate And Magnesium
pdb|1GXB|D Chain D, Anthranilate Phosphoribosyltransferase In Complex With
Pyrophosphate And Magnesium
pdb|1ZXY|A Chain A, Anthranilate Phosphoribosyltransferase From Sulfolobus
Solfataricus In Complex With Prpp And Magnesium
pdb|1ZXY|B Chain B, Anthranilate Phosphoribosyltransferase From Sulfolobus
Solfataricus In Complex With Prpp And Magnesium
pdb|1ZXY|C Chain C, Anthranilate Phosphoribosyltransferase From Sulfolobus
Solfataricus In Complex With Prpp And Magnesium
pdb|1ZXY|D Chain D, Anthranilate Phosphoribosyltransferase From Sulfolobus
Solfataricus In Complex With Prpp And Magnesium
pdb|1ZYK|A Chain A, Anthranilate Phosphoribosyltransferase In Complex With
Prpp, Anthranilate And Magnesium
pdb|1ZYK|B Chain B, Anthranilate Phosphoribosyltransferase In Complex With
Prpp, Anthranilate And Magnesium
pdb|1ZYK|C Chain C, Anthranilate Phosphoribosyltransferase In Complex With
Prpp, Anthranilate And Magnesium
pdb|1ZYK|D Chain D, Anthranilate Phosphoribosyltransferase In Complex With
Prpp, Anthranilate And Magnesium
pdb|2GVQ|A Chain A, Anthranilate Phosphoribosyl-Transferase (Trpd) From S.
Solfataricus In Complex With Anthranilate
pdb|2GVQ|B Chain B, Anthranilate Phosphoribosyl-Transferase (Trpd) From S.
Solfataricus In Complex With Anthranilate
pdb|2GVQ|C Chain C, Anthranilate Phosphoribosyl-Transferase (Trpd) From S.
Solfataricus In Complex With Anthranilate
pdb|2GVQ|D Chain D, Anthranilate Phosphoribosyl-Transferase (Trpd) From S.
Solfataricus In Complex With Anthranilate
Length = 345
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 69/114 (60%), Gaps = 1/114 (0%)
Query: 1 MMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQR 60
+ + YHPAMK V VRK L ++T+FNILGP+ NPA + ++GV++++ + ++ +
Sbjct: 148 LFAQYYHPAMKNVANVRKTLGIRTIFNILGPLTNPANAKYQLMGVFSKDHLDLLSKSAYE 207
Query: 61 FGLKRALVVHSE-GLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESL 113
+ ++V+ E G+DE+SP+G + V++ IE + D+GI +E L
Sbjct: 208 LDFNKIILVYGEPGIDEVSPIGNTFMKIVSKRGIEEVKLNVTDFGISPIPIEKL 261
>pdb|3GBR|A Chain A, Anthranilate Phosphoribosyl-Transferase (Trpd) Double
Mutant D83g F149s From S. Solfataricus
pdb|3GBR|B Chain B, Anthranilate Phosphoribosyl-Transferase (Trpd) Double
Mutant D83g F149s From S. Solfataricus
Length = 345
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 67/109 (61%), Gaps = 1/109 (0%)
Query: 6 YHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKR 65
YHPAMK V VRK L ++T+FNILGP+ NPA + ++GV++++ + ++ + +
Sbjct: 153 YHPAMKNVANVRKTLGIRTIFNILGPLTNPANAKYQLMGVFSKDHLDLLSKSAYELDFNK 212
Query: 66 ALVVHSE-GLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESL 113
++V+ E G+DE+SP+G + V++ IE + D+GI +E L
Sbjct: 213 IILVYGEPGIDEVSPIGNTFMKIVSKRGIEEVKLNVTDFGISPIPIEKL 261
>pdb|2BPQ|A Chain A, Anthranilate Phosphoribosyltransferase (Trpd) From
Mycobacterium Tuberculosis (Apo Structure)
pdb|2BPQ|B Chain B, Anthranilate Phosphoribosyltransferase (Trpd) From
Mycobacterium Tuberculosis (Apo Structure)
Length = 373
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 72/133 (54%), Gaps = 6/133 (4%)
Query: 5 KYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLK 64
++HP+ + VR+++ V TVFN+LGP+ NPA ++G +L MA F +
Sbjct: 181 RFHPSYRHAAAVRREIGVPTVFNLLGPLTNPARPRAGLIGCAFADLAEVMAGV---FAAR 237
Query: 65 RA--LVVH-SEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYN 121
R+ LVVH +GLDE++ I V +++ +FDP +G R L+ L GG N
Sbjct: 238 RSSVLVVHGDDGLDELTTTTTSTIWRVAAGSVDKLTFDPAGFGFARAQLDQLAGGDAQAN 297
Query: 122 AEVLRRVLSGERG 134
A +R VL G RG
Sbjct: 298 AAAVRAVLGGARG 310
>pdb|3QR9|A Chain A, Anthranilate Phosphoribosyltransferase (trpd) From
Mycobacterium Tuberculosis (apo Structure)
pdb|3QR9|B Chain B, Anthranilate Phosphoribosyltransferase (trpd) From
Mycobacterium Tuberculosis (apo Structure)
pdb|3QQS|A Chain A, Anthranilate Phosphoribosyltransferase (trpd) From
Mycobacterium Tuberculosis (complex With Inhibitor
Acs172)
pdb|3QQS|B Chain B, Anthranilate Phosphoribosyltransferase (trpd) From
Mycobacterium Tuberculosis (complex With Inhibitor
Acs172)
pdb|3QQS|C Chain C, Anthranilate Phosphoribosyltransferase (trpd) From
Mycobacterium Tuberculosis (complex With Inhibitor
Acs172)
pdb|3QQS|D Chain D, Anthranilate Phosphoribosyltransferase (trpd) From
Mycobacterium Tuberculosis (complex With Inhibitor
Acs172)
pdb|3QS8|A Chain A, Anthranilate Phosphoribosyltransferase (trpd) From
Mycobacterium Tuberculosis (complex With Inhibitor
Acs174)
pdb|3QS8|B Chain B, Anthranilate Phosphoribosyltransferase (trpd) From
Mycobacterium Tuberculosis (complex With Inhibitor
Acs174)
pdb|3QS8|C Chain C, Anthranilate Phosphoribosyltransferase (trpd) From
Mycobacterium Tuberculosis (complex With Inhibitor
Acs174)
pdb|3QS8|D Chain D, Anthranilate Phosphoribosyltransferase (trpd) From
Mycobacterium Tuberculosis (complex With Inhibitor
Acs174)
pdb|3QSA|A Chain A, Anthranilate Phosphoribosyltransferase (Trpd) From
Mycobacterium Tuberculosis (Complex With Inhibitor
Tamu-A7)
pdb|3QSA|B Chain B, Anthranilate Phosphoribosyltransferase (Trpd) From
Mycobacterium Tuberculosis (Complex With Inhibitor
Tamu-A7)
pdb|3R6C|A Chain A, Anthranilate Phosphoribosyltransferase (trpd) From
Mycobacterium Tuberculosis (complex With Inhibitor
Acs179)
pdb|3R6C|B Chain B, Anthranilate Phosphoribosyltransferase (trpd) From
Mycobacterium Tuberculosis (complex With Inhibitor
Acs179)
pdb|3R88|A Chain A, Anthranilate Phosphoribosyltransferase (trpd) From
Mycobacterium Tuberculosis (complex With Inhibitor
Acs145)
pdb|3R88|B Chain B, Anthranilate Phosphoribosyltransferase (trpd) From
Mycobacterium Tuberculosis (complex With Inhibitor
Acs145)
pdb|3TWP|A Chain A, Crystal Structure Of M. Tuberculosis Trpd In Complex With
An Inhibitor
pdb|3TWP|B Chain B, Crystal Structure Of M. Tuberculosis Trpd In Complex With
An Inhibitor
pdb|3TWP|C Chain C, Crystal Structure Of M. Tuberculosis Trpd In Complex With
An Inhibitor
pdb|3TWP|D Chain D, Crystal Structure Of M. Tuberculosis Trpd In Complex With
An Inhibitor
pdb|3UU1|A Chain A, Anthranilate Phosphoribosyltransferase (trpd) From
Mycobacterium Tuberculosis (complex With Inhibitor
Acs142)
pdb|3UU1|B Chain B, Anthranilate Phosphoribosyltransferase (trpd) From
Mycobacterium Tuberculosis (complex With Inhibitor
Acs142)
pdb|3UU1|C Chain C, Anthranilate Phosphoribosyltransferase (trpd) From
Mycobacterium Tuberculosis (complex With Inhibitor
Acs142)
pdb|3UU1|D Chain D, Anthranilate Phosphoribosyltransferase (trpd) From
Mycobacterium Tuberculosis (complex With Inhibitor
Acs142)
Length = 377
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 72/133 (54%), Gaps = 6/133 (4%)
Query: 5 KYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLK 64
++HP+ + VR+++ V TVFN+LGP+ NPA ++G +L MA F +
Sbjct: 180 RFHPSYRHAAAVRREIGVPTVFNLLGPLTNPARPRAGLIGCAFADLAEVMAGV---FAAR 236
Query: 65 RA--LVVH-SEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYN 121
R+ LVVH +GLDE++ I V +++ +FDP +G R L+ L GG N
Sbjct: 237 RSSVLVVHGDDGLDELTTTTTSTIWRVAAGSVDKLTFDPAGFGFARAQLDQLAGGDAQAN 296
Query: 122 AEVLRRVLSGERG 134
A +R VL G RG
Sbjct: 297 AAAVRAVLGGARG 309
>pdb|1ZVW|A Chain A, The Crystal Structure Of Trpd (Rv2192c) From Mycobacterium
Tuberculosis In Complex With Prpp And Magnesium
pdb|1ZVW|B Chain B, The Crystal Structure Of Trpd (Rv2192c) From Mycobacterium
Tuberculosis In Complex With Prpp And Magnesium
Length = 378
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 71/133 (53%), Gaps = 6/133 (4%)
Query: 5 KYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLK 64
++HP+ + VR+++ V TVFN+LGP+ NPA ++G +L A F +
Sbjct: 181 RFHPSYRHAAAVRREIGVPTVFNLLGPLTNPARPRAGLIGCAFADLAEVXAGV---FAAR 237
Query: 65 RA--LVVH-SEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYN 121
R+ LVVH +GLDE++ I V +++ +FDP +G R L+ L GG N
Sbjct: 238 RSSVLVVHGDDGLDELTTTTTSTIWRVAAGSVDKLTFDPAGFGFARAQLDQLAGGDAQAN 297
Query: 122 AEVLRRVLSGERG 134
A +R VL G RG
Sbjct: 298 AAAVRAVLGGARG 310
>pdb|2W48|A Chain A, Crystal Structure Of The Full-Length Sorbitol Operon
Regulator Sorc From Klebsiella Pneumoniae
pdb|2W48|B Chain B, Crystal Structure Of The Full-Length Sorbitol Operon
Regulator Sorc From Klebsiella Pneumoniae
pdb|2W48|C Chain C, Crystal Structure Of The Full-Length Sorbitol Operon
Regulator Sorc From Klebsiella Pneumoniae
pdb|2W48|D Chain D, Crystal Structure Of The Full-Length Sorbitol Operon
Regulator Sorc From Klebsiella Pneumoniae
Length = 315
Score = 33.5 bits (75), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 24 TVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEGL---DEMSPL 80
T+ +L V A+ YNENL L+ Q+FGLK A+V S+GL +++S +
Sbjct: 37 TISRLLKRGREQGIVTIAINYDYNENLWLEQ-QLKQKFGLKEAVVASSDGLLEEEQLSAM 95
Query: 81 G 81
G
Sbjct: 96 G 96
>pdb|3EFB|A Chain A, Crystal Structure Of Probable Sor Operon Regulator From
Shigella Flexneri
pdb|3EFB|B Chain B, Crystal Structure Of Probable Sor Operon Regulator From
Shigella Flexneri
pdb|3EFB|C Chain C, Crystal Structure Of Probable Sor Operon Regulator From
Shigella Flexneri
pdb|3EFB|D Chain D, Crystal Structure Of Probable Sor Operon Regulator From
Shigella Flexneri
Length = 266
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 38 VPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEGLDEMSPL 80
V A+ YNENL L+ Q+FGLK +VV DE + L
Sbjct: 2 VTIAINYDYNENLWLEQ-QLKQKFGLKDVVVVSGNDEDEETQL 43
>pdb|2P4Z|A Chain A, A Ferredoxin-Like Metallo-Beta-Lactamase Superfamily
Protein From Thermoanaerobacter Tengcongensis
pdb|2P4Z|B Chain B, A Ferredoxin-Like Metallo-Beta-Lactamase Superfamily
Protein From Thermoanaerobacter Tengcongensis
Length = 284
Score = 27.3 bits (59), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 12/76 (15%)
Query: 25 VFNILGPMLNPACVPF--AVVGVYN-----ENLVLKMANALQRFGLKRALVVHSEGLDEM 77
+ NIL N V + +++G ++ E V +A ++ +G+K+ L H G+DE
Sbjct: 203 ILNILETARNRFGVSYIKSLIGGFHLRGMEEEKVKDIARKIEEYGVKKVLTGHCTGIDEY 262
Query: 78 SPLGPGLILDVTQEKI 93
G + V ++KI
Sbjct: 263 -----GFLKSVLKDKI 273
>pdb|4EV6|A Chain A, The Complete Structure Of Cora Magnesium Transporter From
Methanocaldococcus Jannaschii
pdb|4EV6|B Chain B, The Complete Structure Of Cora Magnesium Transporter From
Methanocaldococcus Jannaschii
pdb|4EV6|C Chain C, The Complete Structure Of Cora Magnesium Transporter From
Methanocaldococcus Jannaschii
pdb|4EV6|D Chain D, The Complete Structure Of Cora Magnesium Transporter From
Methanocaldococcus Jannaschii
pdb|4EV6|E Chain E, The Complete Structure Of Cora Magnesium Transporter From
Methanocaldococcus Jannaschii
Length = 339
Score = 26.6 bits (57), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 18 KKLKVKTVFNILGPMLNPACVPFAVVGVYNENL-VLKMANALQRFGLKRALVV 69
+ +K+ + IL + VP + G+Y N L +AN Q F L AL+V
Sbjct: 271 ENIKMNQIMKILTMVTTIFAVPMWITGIYGMNFSYLPLANNPQGFWLVMALMV 323
>pdb|3J20|O Chain O, Promiscuous Behavior Of Proteins In Archaeal Ribosomes
Revealed By Cryo-em: Implications For Evolution Of
Eukaryotic Ribosomes (30s Ribosomal Subunit)
Length = 148
Score = 26.6 bits (57), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 66 ALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTL 110
+V GLD + G + D +KIE DP+ +GIPR +
Sbjct: 37 TMVCRVAGLDPF--MKAGYLTDEQVKKIEEILADPVAHGIPRWAV 79
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,070,274
Number of Sequences: 62578
Number of extensions: 178135
Number of successful extensions: 353
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 336
Number of HSP's gapped (non-prelim): 14
length of query: 193
length of database: 14,973,337
effective HSP length: 93
effective length of query: 100
effective length of database: 9,153,583
effective search space: 915358300
effective search space used: 915358300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)