BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029432
(193 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WS7|A Chain A, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|B Chain B, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|C Chain C, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|D Chain D, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS8|A Chain A, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|B Chain B, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|C Chain C, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|D Chain D, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
Length = 109
Score = 76.6 bits (187), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 54/101 (53%), Gaps = 3/101 (2%)
Query: 32 YKVGDLDGWGIPTSANPLVYAKWSKYHTFAIGDSLLFLYPPSQDSVIQVTAQSYDSCKLK 91
+KVGD GW T+ P YAKW+ + F +GDSLLF Y +V+QV + + SC
Sbjct: 5 HKVGDSTGW---TTLVPYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNSS 61
Query: 92 DPILYMNNGNSLFNITKEGNFYFTSGEPGHCQKKQKLHITV 132
P +G + + G FYF G PGHCQ QK+ I V
Sbjct: 62 SPAASYTSGADSIPLKRPGTFYFLCGIPGHCQLGQKVEIKV 102
>pdb|1JER|A Chain A, Cucumber Stellacyanin, Cu2+, Ph 7.0
Length = 138
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 52/101 (51%), Gaps = 4/101 (3%)
Query: 34 VGDLDGWGIPTSANPLVYAKWSKYHTFAIGDSLLFLYPPSQDSVIQV-TAQSYDSCKLKD 92
VGD GW +P+S P Y++W+ TF +GDSL F +P + +V ++ T QS+D+C +
Sbjct: 8 VGDNTGWSVPSS--PNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACNFVN 65
Query: 93 PILYMNNGNSLFNITKE-GNFYFTSGEPGHCQKKQKLHITV 132
+ + + E G YF HC QKL I V
Sbjct: 66 SDNDVERTSPVIERLDELGMHYFVCTVGTHCSNGQKLSINV 106
>pdb|1X9R|A Chain A, Umecyanin From Horse Raddish- Crystal Structure Of The
Oxidised Form
pdb|1X9R|B Chain B, Umecyanin From Horse Raddish- Crystal Structure Of The
Oxidised Form
pdb|1X9U|A Chain A, Umecyanin From Horse Raddish- Crystal Structure Of The
Reduced Form
pdb|1X9U|B Chain B, Umecyanin From Horse Raddish- Crystal Structure Of The
Reduced Form
Length = 116
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 46/103 (44%), Gaps = 2/103 (1%)
Query: 30 HQYKVGDLDGWGIPTSANPLVYAKWSKYHTFAIGDSLLFLYPPSQDSVIQVTAQSYDSCK 89
Y VG W P ++P Y W+ TF +GD L F + V VT ++D+CK
Sbjct: 2 EDYDVGGDMEWKRP--SDPKFYITWATGKTFRVGDELEFDFAAGMHDVAVVTKDAFDNCK 59
Query: 90 LKDPILYMNNGNSLFNITKEGNFYFTSGEPGHCQKKQKLHITV 132
++PI +M + G Y+ HC+ QKL I V
Sbjct: 60 KENPISHMTTPPVKIMLNTTGPQYYICTVGDHCRVGQKLSINV 102
>pdb|2CBP|A Chain A, Cucumber Basic Protein, A Blue Copper Protein
Length = 96
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 40/99 (40%), Gaps = 8/99 (8%)
Query: 32 YKVGDLDGWGIPTSANPLVYAKWSKYHTFAIGDSLLFLYPPSQDSVIQVTAQSYDSCKLK 91
Y VG GW T + W K F GD LLF Y PS +V+ V + +C
Sbjct: 3 YVVGGSGGWTFNTES-------WPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNTP 55
Query: 92 DPILYMNNGNSLFNITKEGNFYFTSGEPGHCQKKQKLHI 130
+G + K G YF PGHCQ K+ +
Sbjct: 56 AGAKVYTSGRDQIKLPK-GQSYFICNFPGHCQSGMKIAV 93
>pdb|1F56|A Chain A, Spinach Plantacyanin
pdb|1F56|B Chain B, Spinach Plantacyanin
pdb|1F56|C Chain C, Spinach Plantacyanin
Length = 91
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Query: 59 TFAIGDSLLFLYPPSQDSVIQVTAQSYDSCKLKDPILYMNNGNSLFNITKEGNFYFTSGE 118
+F GD L+F Y Q +V+ V + Y SC ++G +T+ G YF
Sbjct: 18 SFRAGDVLVFKYIKGQHNVVAVNGRGYASCSAPRGARTYSSGQDRIKLTR-GQNYFICSF 76
Query: 119 PGHCQKKQKLHIT 131
PGHC K+ I
Sbjct: 77 PGHCGGGMKIAIN 89
>pdb|4EGB|A Chain A, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|B Chain B, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|C Chain C, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|D Chain D, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|E Chain E, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|F Chain F, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|G Chain G, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|H Chain H, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
Length = 346
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 9/70 (12%)
Query: 78 IQVTAQSYDSCKLK--DPILYMNNGNSLFNITKEGNFYFTSGEP------GHCQKKQKLH 129
+ QSY++ K+ D + Y N N++ +I N+YF GE H K++ +
Sbjct: 41 VHYXLQSYETYKIINFDALTYSGNLNNVKSIQDHPNYYFVKGEIQNGELLEHVIKERDVQ 100
Query: 130 ITVGNVSAES 139
+ V N +AES
Sbjct: 101 VIV-NFAAES 109
>pdb|4FA8|E Chain E, Multi-Pronged Modulation Of Cytokine Signaling
pdb|4FA8|F Chain F, Multi-Pronged Modulation Of Cytokine Signaling
pdb|4FA8|G Chain G, Multi-Pronged Modulation Of Cytokine Signaling
Length = 147
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 4/70 (5%)
Query: 55 SKYHTFAIG----DSLLFLYPPSQDSVIQVTAQSYDSCKLKDPILYMNNGNSLFNITKEG 110
S+Y + IG SL L ++ Q+T + D +LKDP+ Y+ L E
Sbjct: 3 SEYCSHMIGSGHLQSLQRLIDSQMETSCQITFEFVDQEQLKDPVCYLKKAFLLVQDIMED 62
Query: 111 NFYFTSGEPG 120
F P
Sbjct: 63 TMRFRDNTPN 72
>pdb|3UEZ|E Chain E, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|3UEZ|F Chain F, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|3UEZ|G Chain G, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|3UEZ|H Chain H, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|3UF2|A Chain A, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine
pdb|3UF2|B Chain B, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine
pdb|3UF2|C Chain C, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine
pdb|3UF2|D Chain D, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine
pdb|3UF2|E Chain E, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine
pdb|3UF2|F Chain F, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine
pdb|3UF2|G Chain G, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine
pdb|3UF2|H Chain H, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine
pdb|3UF2|I Chain I, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine
pdb|3UF2|J Chain J, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine
pdb|4ADF|G Chain G, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|H Chain H, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|I Chain I, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|J Chain J, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|K Chain K, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|L Chain L, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|S Chain S, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|T Chain T, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|U Chain U, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|V Chain V, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|W Chain W, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|X Chain X, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
Length = 153
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 4/70 (5%)
Query: 55 SKYHTFAIG----DSLLFLYPPSQDSVIQVTAQSYDSCKLKDPILYMNNGNSLFNITKEG 110
S+Y + IG SL L ++ Q+T + D +LKDP+ Y+ L E
Sbjct: 8 SEYCSHMIGSGHLQSLQRLIDSQMETSCQITFEFVDQEQLKDPVCYLKKAFLLVQDIMED 67
Query: 111 NFYFTSGEPG 120
F P
Sbjct: 68 TMRFRDNTPN 77
>pdb|1HMC|A Chain A, Three-Dimensional Structure Of Dimeric Human Recombinant
Macrophage Colony Stimulating Factor
pdb|1HMC|B Chain B, Three-Dimensional Structure Of Dimeric Human Recombinant
Macrophage Colony Stimulating Factor
Length = 148
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 4/70 (5%)
Query: 55 SKYHTFAIG----DSLLFLYPPSQDSVIQVTAQSYDSCKLKDPILYMNNGNSLFNITKEG 110
S+Y + IG SL L ++ Q+T + D +LKDP+ Y+ L E
Sbjct: 1 SEYCSHMIGSGHLQSLQRLIDSQMETSCQITFEFVDQEQLKDPVCYLKKAFLLVQDIMED 60
Query: 111 NFYFTSGEPG 120
F P
Sbjct: 61 TMRFRDNTPN 70
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,032,839
Number of Sequences: 62578
Number of extensions: 184586
Number of successful extensions: 338
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 326
Number of HSP's gapped (non-prelim): 11
length of query: 193
length of database: 14,973,337
effective HSP length: 93
effective length of query: 100
effective length of database: 9,153,583
effective search space: 915358300
effective search space used: 915358300
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)