Query 029432
Match_columns 193
No_of_seqs 201 out of 843
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 12:49:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029432.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029432hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03148 Blue copper-like prot 100.0 5.9E-43 1.3E-47 285.2 16.3 104 25-134 16-119 (167)
2 PF02298 Cu_bind_like: Plastoc 100.0 6.7E-34 1.4E-38 208.8 4.8 85 40-126 1-85 (85)
3 PRK02710 plastocyanin; Provisi 98.7 3.2E-07 7E-12 70.8 10.7 70 57-133 48-119 (119)
4 PF00127 Copper-bind: Copper b 98.4 1.4E-06 3.1E-11 64.8 8.6 75 57-133 18-99 (99)
5 TIGR02656 cyanin_plasto plasto 98.4 3.6E-06 7.9E-11 62.7 9.2 90 31-133 2-99 (99)
6 TIGR03102 halo_cynanin halocya 98.1 2.6E-05 5.7E-10 60.4 9.5 88 28-133 22-115 (115)
7 COG3794 PetE Plastocyanin [Ene 98.0 4.7E-05 1E-09 60.2 9.0 69 57-133 55-127 (128)
8 TIGR02375 pseudoazurin pseudoa 98.0 4.4E-05 9.6E-10 59.2 8.6 74 57-135 16-89 (116)
9 TIGR02657 amicyanin amicyanin. 97.2 0.0021 4.6E-08 46.2 7.8 70 57-133 12-83 (83)
10 TIGR03095 rusti_cyanin rusticy 97.0 0.0034 7.4E-08 50.4 7.2 74 57-133 53-148 (148)
11 PF06525 SoxE: Sulfocyanin (So 96.5 0.015 3.3E-07 49.0 8.1 77 60-136 90-189 (196)
12 PF00812 Ephrin: Ephrin; Inte 96.3 0.002 4.4E-08 51.9 2.0 75 59-133 25-144 (145)
13 KOG3858 Ephrin, ligand for Eph 96.2 0.15 3.3E-06 44.2 12.6 79 59-138 46-165 (233)
14 PF13473 Cupredoxin_1: Cupredo 95.5 0.014 3E-07 43.4 3.0 63 57-132 36-104 (104)
15 TIGR03094 sulfo_cyanin sulfocy 94.9 0.041 8.9E-07 46.2 4.5 30 107-136 159-188 (195)
16 COG4454 Uncharacterized copper 92.1 0.26 5.6E-06 40.3 4.5 78 56-133 63-157 (158)
17 TIGR03096 nitroso_cyanin nitro 90.6 0.42 9.1E-06 38.2 4.2 54 56-118 61-120 (135)
18 TIGR02376 Cu_nitrite_red nitri 88.2 1.9 4E-05 38.5 7.1 75 58-135 61-147 (311)
19 TIGR02695 azurin azurin. Azuri 87.0 3.1 6.6E-05 32.9 6.8 29 102-131 91-124 (125)
20 PF07732 Cu-oxidase_3: Multico 84.0 0.8 1.7E-05 35.0 2.2 79 57-135 27-116 (117)
21 PRK02888 nitrous-oxide reducta 83.2 4.7 0.0001 39.7 7.6 67 57-134 556-634 (635)
22 PRK10378 inactive ferrous ion 80.3 13 0.00027 34.5 8.9 27 103-134 91-117 (375)
23 PF07172 GRP: Glycine rich pro 78.7 1.3 2.7E-05 33.3 1.6 27 1-31 1-27 (95)
24 PLN02604 oxidoreductase 76.5 13 0.00028 35.9 8.2 77 57-136 56-146 (566)
25 TIGR02866 CoxB cytochrome c ox 73.5 12 0.00026 31.1 6.3 68 58-135 119-193 (201)
26 PF00116 COX2: Cytochrome C ox 72.1 6.8 0.00015 30.1 4.2 64 57-132 47-119 (120)
27 TIGR03388 ascorbase L-ascorbat 67.9 12 0.00026 35.8 5.7 79 57-136 33-123 (541)
28 TIGR02228 sigpep_I_arch signal 67.7 20 0.00044 29.0 6.2 19 55-73 56-74 (158)
29 cd06555 ASCH_PF0470_like ASC-1 66.5 5.9 0.00013 30.4 2.7 30 58-87 30-61 (109)
30 PF02839 CBM_5_12: Carbohydrat 64.2 3.5 7.5E-05 25.5 0.9 18 51-68 1-18 (41)
31 COG1622 CyoA Heme/copper-type 62.3 19 0.00042 31.3 5.5 90 34-136 118-214 (247)
32 MTH00047 COX2 cytochrome c oxi 58.5 14 0.00031 30.9 3.9 32 103-136 159-193 (194)
33 PLN02354 copper ion binding / 57.6 88 0.0019 30.3 9.6 78 58-135 60-147 (552)
34 PLN00044 multi-copper oxidase- 54.9 32 0.00069 33.7 6.1 75 58-136 62-150 (596)
35 PF10377 ATG11: Autophagy-rela 53.8 23 0.0005 27.7 4.2 18 58-75 41-58 (129)
36 TIGR01480 copper_res_A copper- 53.6 33 0.00072 33.5 6.0 86 40-132 488-586 (587)
37 PLN02991 oxidoreductase 52.1 1.8E+02 0.0039 28.2 10.7 78 58-135 61-148 (543)
38 PF09792 But2: Ubiquitin 3 bin 51.7 63 0.0014 25.7 6.4 32 103-137 100-131 (143)
39 PF14326 DUF4384: Domain of un 49.6 90 0.002 22.0 6.5 17 59-75 2-18 (83)
40 PLN02835 oxidoreductase 49.0 1.3E+02 0.0029 28.9 9.3 77 58-134 62-148 (539)
41 PLN02168 copper ion binding / 43.7 77 0.0017 30.7 6.7 80 57-136 58-147 (545)
42 PLN02191 L-ascorbate oxidase 42.7 59 0.0013 31.5 5.9 78 57-134 55-143 (574)
43 PF12961 DUF3850: Domain of Un 41.4 17 0.00037 26.1 1.5 13 57-69 26-38 (72)
44 PF02362 B3: B3 DNA binding do 40.6 20 0.00043 25.5 1.8 21 55-75 69-89 (100)
45 PLN02792 oxidoreductase 40.1 84 0.0018 30.3 6.4 79 58-136 49-137 (536)
46 MTH00140 COX2 cytochrome c oxi 38.8 45 0.00097 28.4 4.0 31 103-135 183-216 (228)
47 TIGR03389 laccase laccase, pla 38.7 94 0.002 29.7 6.5 79 57-136 35-124 (539)
48 TIGR01480 copper_res_A copper- 38.4 77 0.0017 31.0 5.9 78 57-135 77-163 (587)
49 KOG0674 Calreticulin [Posttran 38.0 1.1E+02 0.0024 28.2 6.5 14 119-132 135-149 (406)
50 KOG1263 Multicopper oxidases [ 36.5 4.2E+02 0.0091 25.9 11.3 137 1-144 2-158 (563)
51 PF12195 End_beta_barrel: Beta 35.9 17 0.00037 26.5 0.8 29 57-85 25-59 (83)
52 PF10731 Anophelin: Thrombin i 35.6 34 0.00074 23.9 2.2 14 27-40 20-33 (65)
53 KOG2315 Predicted translation 35.4 72 0.0016 31.1 5.0 62 55-116 210-277 (566)
54 PF04014 Antitoxin-MazE: Antid 34.8 13 0.00028 23.7 -0.0 33 33-73 2-34 (47)
55 PF05382 Amidase_5: Bacterioph 32.9 1.3E+02 0.0029 24.1 5.5 35 58-92 74-113 (145)
56 PRK09723 putative fimbrial-lik 30.7 4.7E+02 0.01 24.8 10.3 13 27-39 25-37 (421)
57 PTZ00047 cytochrome c oxidase 30.4 74 0.0016 26.2 3.7 30 103-134 116-148 (162)
58 MTH00154 COX2 cytochrome c oxi 30.0 73 0.0016 27.2 3.8 30 103-134 183-215 (227)
59 MTH00168 COX2 cytochrome c oxi 29.2 77 0.0017 27.0 3.8 30 103-134 183-215 (225)
60 COG3627 PhnJ Uncharacterized e 29.1 35 0.00077 29.7 1.7 25 102-126 257-281 (291)
61 MTH00129 COX2 cytochrome c oxi 28.9 72 0.0016 27.3 3.6 30 103-134 183-215 (230)
62 PF09451 ATG27: Autophagy-rela 28.9 53 0.0012 28.5 2.9 25 27-56 221-245 (268)
63 MTH00098 COX2 cytochrome c oxi 28.7 77 0.0017 27.1 3.8 30 103-134 183-215 (227)
64 smart00495 ChtBD3 Chitin-bindi 27.1 38 0.00083 20.7 1.2 18 51-68 1-18 (41)
65 MTH00139 COX2 cytochrome c oxi 27.0 85 0.0018 26.7 3.7 30 103-134 183-215 (226)
66 MTH00117 COX2 cytochrome c oxi 26.9 90 0.002 26.6 3.9 30 103-134 183-215 (227)
67 TIGR01433 CyoA cytochrome o ub 26.0 95 0.002 26.5 3.8 31 103-135 182-215 (226)
68 PF11604 CusF_Ec: Copper bindi 25.5 44 0.00095 23.2 1.4 24 52-75 35-58 (70)
69 KOG1546 Metacaspase involved i 25.3 43 0.00094 30.8 1.7 14 59-72 134-147 (362)
70 MTH00038 COX2 cytochrome c oxi 25.0 1E+02 0.0022 26.3 3.9 30 103-134 183-215 (229)
71 PF06462 Hyd_WA: Propeller; I 24.5 1.5E+02 0.0032 17.5 3.4 25 103-127 3-27 (32)
72 PF07731 Cu-oxidase_2: Multico 24.0 59 0.0013 24.4 2.0 78 57-134 35-136 (138)
73 MTH00023 COX2 cytochrome c oxi 23.6 1.1E+02 0.0023 26.4 3.7 31 103-135 194-227 (240)
74 KOG3416 Predicted nucleic acid 23.3 80 0.0017 25.2 2.6 38 31-78 40-78 (134)
75 PF11008 DUF2846: Protein of u 23.2 2.6E+02 0.0056 20.9 5.4 28 56-83 41-68 (117)
76 PF00686 CBM_20: Starch bindin 22.0 92 0.002 22.3 2.6 43 29-71 16-67 (96)
77 COG5569 Uncharacterized conser 21.9 69 0.0015 24.6 1.9 26 55-80 79-106 (108)
78 TIGR01432 QOXA cytochrome aa3 21.9 1.2E+02 0.0027 25.4 3.7 31 103-135 173-206 (217)
79 cd05810 CBM20_alpha_MTH Glucan 21.5 98 0.0021 22.6 2.7 42 30-71 17-63 (97)
80 MTH00008 COX2 cytochrome c oxi 21.5 1.3E+02 0.0028 25.8 3.8 30 103-134 183-215 (228)
81 PF01345 DUF11: Domain of unkn 21.5 72 0.0016 21.8 1.9 23 49-71 26-48 (76)
82 cd05829 Sortase_E Sortase E (S 21.1 1.7E+02 0.0037 22.9 4.2 23 58-80 71-93 (144)
83 PF12791 RsgI_N: Anti-sigma fa 20.9 2.5E+02 0.0053 18.1 4.3 36 99-135 4-39 (56)
84 cd05813 CBM20_genethonin_1 Gen 20.3 1.2E+02 0.0027 21.6 3.0 41 31-71 18-61 (95)
85 MTH00051 COX2 cytochrome c oxi 20.2 1.3E+02 0.0028 25.8 3.5 30 103-134 187-219 (234)
86 PLN00044 multi-copper oxidase- 20.0 7.3E+02 0.016 24.4 9.0 78 59-136 436-537 (596)
No 1
>PLN03148 Blue copper-like protein; Provisional
Probab=100.00 E-value=5.9e-43 Score=285.20 Aligned_cols=104 Identities=27% Similarity=0.554 Sum_probs=97.8
Q ss_pred ccceeeEEEecCCCCCCCCCCCCcccccccccCCeeeeCCEEEEEeCCCCCeEEEEcccCCCCCCCCCCceeccCCceEE
Q 029432 25 TKSFCHQYKVGDLDGWGIPTSANPLVYAKWSKYHTFAIGDSLLFLYPPSQDSVIQVTAQSYDSCKLKDPILYMNNGNSLF 104 (193)
Q Consensus 25 ~~a~A~~~~VG~~~GW~~~~~~~~~~Y~~WA~~~~F~vGD~LvF~y~~~~hsV~~V~~~~Y~~C~~s~pi~~~~~G~~~v 104 (193)
..+.|++|+|||+.||+.. .+|++|+++++|+|||+|+|+|++++|+|+||+|++|++|+.++++..+++|++.|
T Consensus 16 ~~~~a~~~~VGd~~GW~~~-----~~Y~~WA~~k~F~VGD~LvF~Y~~~~hnV~~V~~~~Y~~C~~~~pi~~~tsG~d~v 90 (167)
T PLN03148 16 SATTATDHIVGANKGWNPG-----INYTLWANNQTFYVGDLISFRYQKTQYNVFEVNQTGYDNCTTEGAAGNWTSGKDFI 90 (167)
T ss_pred hhccceEEEeCCCCCcCCC-----CChhHhhcCCCCccCCEEEEEecCCCceEEEEChHHcCcccCCCCcceecCCCcEE
Confidence 3578899999999999843 36999999999999999999999999999999999999999999999999999999
Q ss_pred EecccccEEEEcCCCCcccCCCeEEEEeeC
Q 029432 105 NITKEGNFYFTSGEPGHCQKKQKLHITVGN 134 (193)
Q Consensus 105 ~L~~~G~~YFicg~~gHC~~GmKl~I~V~~ 134 (193)
+|+++|+|||||+ .+||++||||+|+|.+
T Consensus 91 ~L~~~G~~YFIcg-~ghC~~GmKl~I~V~~ 119 (167)
T PLN03148 91 PLNKAKRYYFICG-NGQCFNGMKVTILVHP 119 (167)
T ss_pred EecCCccEEEEcC-CCccccCCEEEEEEcC
Confidence 9999999999999 6999999999999964
No 2
>PF02298 Cu_bind_like: Plastocyanin-like domain; InterPro: IPR003245 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved. This domain is found in a variety of plant cyanins and pollern allergen. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 3.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1JER_A 1WS7_A 1WS8_D 1F56_B 1X9R_B 1X9U_A 2CBP_A.
Probab=100.00 E-value=6.7e-34 Score=208.82 Aligned_cols=85 Identities=45% Similarity=0.877 Sum_probs=70.8
Q ss_pred CCCCCCCCcccccccccCCeeeeCCEEEEEeCCCCCeEEEEcccCCCCCCCCCCceeccCCceEEEecccccEEEEcCCC
Q 029432 40 WGIPTSANPLVYAKWSKYHTFAIGDSLLFLYPPSQDSVIQVTAQSYDSCKLKDPILYMNNGNSLFNITKEGNFYFTSGEP 119 (193)
Q Consensus 40 W~~~~~~~~~~Y~~WA~~~~F~vGD~LvF~y~~~~hsV~~V~~~~Y~~C~~s~pi~~~~~G~~~v~L~~~G~~YFicg~~ 119 (193)
|+++++ ..+|++||++++|+|||+|+|+|++++|+|+||+|++|++|+.++|+..+++|++.|+|+++|++||||+++
T Consensus 1 W~~~~~--~~~Y~~Wa~~~~F~vGD~LvF~y~~~~h~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~L~~~G~~YFic~~~ 78 (85)
T PF02298_consen 1 WTIPTN--ASNYTDWASGKTFRVGDTLVFNYDSGQHSVVEVSKADYDSCNSSNPISTYSTGNDTVTLTKPGPHYFICGVP 78 (85)
T ss_dssp SSSSSS--TTHHHHHHCTS-BETTEEEEEE--TTTB-EEEESHHHHHHT--STTSEEE-SSEEEEEE-SSEEEEEE--ST
T ss_pred CccCCC--ccchhHhhcCCcEeCCCEEEEEecCCCCeEEecChhhCccCCCCCceecccCCCEEEEeCCCcCeEEEeCCC
Confidence 888764 368999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCC
Q 029432 120 GHCQKKQ 126 (193)
Q Consensus 120 gHC~~Gm 126 (193)
+||++||
T Consensus 79 ~HC~~Gq 85 (85)
T PF02298_consen 79 GHCQKGQ 85 (85)
T ss_dssp TTTTTT-
T ss_pred CcccccC
Confidence 9999998
No 3
>PRK02710 plastocyanin; Provisional
Probab=98.67 E-value=3.2e-07 Score=70.78 Aligned_cols=70 Identities=17% Similarity=0.158 Sum_probs=49.3
Q ss_pred CCeeeeCCEEEEEeC-CCCCeEEEEcccCCCCCCCCCCceeccCC-ceEEEecccccEEEEcCCCCcccCCCeEEEEee
Q 029432 57 YHTFAIGDSLLFLYP-PSQDSVIQVTAQSYDSCKLKDPILYMNNG-NSLFNITKEGNFYFTSGEPGHCQKKQKLHITVG 133 (193)
Q Consensus 57 ~~~F~vGD~LvF~y~-~~~hsV~~V~~~~Y~~C~~s~pi~~~~~G-~~~v~L~~~G~~YFicg~~gHC~~GmKl~I~V~ 133 (193)
..++++||++.|... ...|++.--. .+....++ .....| ..+++++.+|.|-|+|. +|=+.|||..|.|.
T Consensus 48 ~i~v~~Gd~V~~~N~~~~~H~v~~~~---~~~~~~~~--~~~~pg~t~~~tF~~~G~y~y~C~--~H~~~gM~G~I~V~ 119 (119)
T PRK02710 48 TLTIKAGDTVKWVNNKLAPHNAVFDG---AKELSHKD--LAFAPGESWEETFSEAGTYTYYCE--PHRGAGMVGKITVE 119 (119)
T ss_pred EEEEcCCCEEEEEECCCCCceEEecC---Cccccccc--cccCCCCEEEEEecCCEEEEEEcC--CCccCCcEEEEEEC
Confidence 569999999999874 4689986321 11111111 112334 34788899999999998 89999999999984
No 4
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=98.44 E-value=1.4e-06 Score=64.76 Aligned_cols=75 Identities=20% Similarity=0.273 Sum_probs=54.4
Q ss_pred CCeeeeCCEEEEEe-CCCCCeEEEEccc--CCCCCCCCCC---ceeccCCce-EEEecccccEEEEcCCCCcccCCCeEE
Q 029432 57 YHTFAIGDSLLFLY-PPSQDSVIQVTAQ--SYDSCKLKDP---ILYMNNGNS-LFNITKEGNFYFTSGEPGHCQKKQKLH 129 (193)
Q Consensus 57 ~~~F~vGD~LvF~y-~~~~hsV~~V~~~--~Y~~C~~s~p---i~~~~~G~~-~v~L~~~G~~YFicg~~gHC~~GmKl~ 129 (193)
..++++||++.|.. ....|++...+.. .-..++.... ......|.+ .++++++|.|.|+|. + |...||+-.
T Consensus 18 ~i~V~~G~tV~~~n~~~~~Hnv~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~~~G~y~y~C~-P-H~~~GM~G~ 95 (99)
T PF00127_consen 18 EITVKAGDTVTFVNNDSMPHNVVFVADGMPAGADSDYVPPGDSSPLLAPGETYSVTFTKPGTYEYYCT-P-HYEAGMVGT 95 (99)
T ss_dssp EEEEETTEEEEEEEESSSSBEEEEETTSSHTTGGHCHHSTTCEEEEBSTTEEEEEEEESSEEEEEEET-T-TGGTTSEEE
T ss_pred EEEECCCCEEEEEECCCCCceEEEecccccccccccccCccccceecCCCCEEEEEeCCCeEEEEEcC-C-CcccCCEEE
Confidence 56899999999999 5789999998621 0111221111 122334543 788889999999999 8 999999999
Q ss_pred EEee
Q 029432 130 ITVG 133 (193)
Q Consensus 130 I~V~ 133 (193)
|.|.
T Consensus 96 i~V~ 99 (99)
T PF00127_consen 96 IIVE 99 (99)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 9984
No 5
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=98.36 E-value=3.6e-06 Score=62.70 Aligned_cols=90 Identities=17% Similarity=0.131 Sum_probs=58.1
Q ss_pred EEEecCCC-CCCCCCCCCcccccccccCCeeeeCCEEEEEeC-CCCCeEEEEcccC-----CCCCCCCCCceeccCCc-e
Q 029432 31 QYKVGDLD-GWGIPTSANPLVYAKWSKYHTFAIGDSLLFLYP-PSQDSVIQVTAQS-----YDSCKLKDPILYMNNGN-S 102 (193)
Q Consensus 31 ~~~VG~~~-GW~~~~~~~~~~Y~~WA~~~~F~vGD~LvF~y~-~~~hsV~~V~~~~-----Y~~C~~s~pi~~~~~G~-~ 102 (193)
+..+|.++ +-.+.|+ ..++++||++.|+.. ...|++...+... .......+-......|. .
T Consensus 2 ~v~~g~~~g~~~F~P~-----------~i~v~~G~~V~~~N~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~t~ 70 (99)
T TIGR02656 2 TVKMGADKGALVFEPA-----------KISIAAGDTVEWVNNKGGPHNVVFDEDAVPAGVKELAKSLSHKDLLNSPGESY 70 (99)
T ss_pred EEEEecCCCceeEeCC-----------EEEECCCCEEEEEECCCCCceEEECCCCCccchhhhcccccccccccCCCCEE
Confidence 34567533 3566542 569999999999975 4679998643210 00011100001122343 4
Q ss_pred EEEecccccEEEEcCCCCcccCCCeEEEEee
Q 029432 103 LFNITKEGNFYFTSGEPGHCQKKQKLHITVG 133 (193)
Q Consensus 103 ~v~L~~~G~~YFicg~~gHC~~GmKl~I~V~ 133 (193)
.++++.+|.|.|+|. +|+..||+..|.|.
T Consensus 71 ~~tF~~~G~y~y~C~--~H~~aGM~G~I~V~ 99 (99)
T TIGR02656 71 EVTFSTPGTYTFYCE--PHRGAGMVGKITVE 99 (99)
T ss_pred EEEeCCCEEEEEEcC--CccccCCEEEEEEC
Confidence 788899999999998 99999999999884
No 6
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=98.12 E-value=2.6e-05 Score=60.39 Aligned_cols=88 Identities=13% Similarity=0.139 Sum_probs=61.5
Q ss_pred eeeEEEec--CCC-CCCCCCCCCcccccccccCCeeeeCCEEEEEeCC--CCCeEEEEcccCCCCCCCCCCceeccCC-c
Q 029432 28 FCHQYKVG--DLD-GWGIPTSANPLVYAKWSKYHTFAIGDSLLFLYPP--SQDSVIQVTAQSYDSCKLKDPILYMNNG-N 101 (193)
Q Consensus 28 ~A~~~~VG--~~~-GW~~~~~~~~~~Y~~WA~~~~F~vGD~LvF~y~~--~~hsV~~V~~~~Y~~C~~s~pi~~~~~G-~ 101 (193)
...+..|| ++. +..+.|. ..++++||+|.|+++. ..|+|.-.....|+. ... ....| .
T Consensus 22 ~~~~v~~G~~~~~g~~~F~P~-----------~ltV~~GdTVtw~~~~d~~~HnV~s~~~~~f~s----~~~-~~~~G~t 85 (115)
T TIGR03102 22 DEVTVDVGAEANGGGFAFDPP-----------AIRVDPGTTVVWEWTGEGGGHNVVSDGDGDLDE----SER-VSEEGTT 85 (115)
T ss_pred ceEEEEecccCCCCceeEeCC-----------EEEECCCCEEEEEECCCCCCEEEEECCCCCccc----ccc-ccCCCCE
Confidence 44667888 322 3666553 4699999999999863 689998643334441 111 12233 4
Q ss_pred eEEEecccccEEEEcCCCCcccCCCeEEEEee
Q 029432 102 SLFNITKEGNFYFTSGEPGHCQKKQKLHITVG 133 (193)
Q Consensus 102 ~~v~L~~~G~~YFicg~~gHC~~GmKl~I~V~ 133 (193)
-.++++++|.|-|+|. -|=..|||-.|.|.
T Consensus 86 ~s~Tf~~~G~Y~Y~C~--pH~~~gM~G~I~V~ 115 (115)
T TIGR03102 86 YEHTFEEPGIYLYVCV--PHEALGMKGAVVVE 115 (115)
T ss_pred EEEEecCCcEEEEEcc--CCCCCCCEEEEEEC
Confidence 5789999999999998 68778999999984
No 7
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=98.00 E-value=4.7e-05 Score=60.16 Aligned_cols=69 Identities=19% Similarity=0.193 Sum_probs=52.3
Q ss_pred CCeeeeCCEEEEEeCCC-CCeEEEEcccCCCCCCCCCCceeccCC---ceEEEecccccEEEEcCCCCcccCCCeEEEEe
Q 029432 57 YHTFAIGDSLLFLYPPS-QDSVIQVTAQSYDSCKLKDPILYMNNG---NSLFNITKEGNFYFTSGEPGHCQKKQKLHITV 132 (193)
Q Consensus 57 ~~~F~vGD~LvF~y~~~-~hsV~~V~~~~Y~~C~~s~pi~~~~~G---~~~v~L~~~G~~YFicg~~gHC~~GmKl~I~V 132 (193)
..+.++||++.|.+... .|||.-+...+. .....+..+ ..+.+++++|.|.|+|. -|=..|||-.|.|
T Consensus 55 ~v~v~pGDTVtw~~~d~~~Hnv~~~~~~~~------~g~~~~~~~~~~s~~~Tfe~~G~Y~Y~C~--PH~~~gM~G~IvV 126 (128)
T COG3794 55 EVTVKPGDTVTWVNTDSVGHNVTAVGGMDP------EGSGTLKAGINESFTHTFETPGEYTYYCT--PHPGMGMKGKIVV 126 (128)
T ss_pred EEEECCCCEEEEEECCCCCceEEEeCCCCc------ccccccccCCCcceEEEecccceEEEEec--cCCCCCcEEEEEe
Confidence 57999999999999877 999998754311 111112222 23778899999999997 5999999999998
Q ss_pred e
Q 029432 133 G 133 (193)
Q Consensus 133 ~ 133 (193)
.
T Consensus 127 ~ 127 (128)
T COG3794 127 G 127 (128)
T ss_pred C
Confidence 6
No 8
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=98.00 E-value=4.4e-05 Score=59.19 Aligned_cols=74 Identities=19% Similarity=0.200 Sum_probs=53.6
Q ss_pred CCeeeeCCEEEEEeCCCCCeEEEEcccCCCCCCCCCCceeccCCceEEEecccccEEEEcCCCCcccCCCeEEEEeeCC
Q 029432 57 YHTFAIGDSLLFLYPPSQDSVIQVTAQSYDSCKLKDPILYMNNGNSLFNITKEGNFYFTSGEPGHCQKKQKLHITVGNV 135 (193)
Q Consensus 57 ~~~F~vGD~LvF~y~~~~hsV~~V~~~~Y~~C~~s~pi~~~~~G~~~v~L~~~G~~YFicg~~gHC~~GmKl~I~V~~~ 135 (193)
..++++||+|.|.+....|+|..+.....+. .+....-.+..-.++++++|.|-|.|. .|=..||+-.|.|...
T Consensus 16 ~v~V~~GdTV~f~n~d~~Hnv~~~~~~~p~g---~~~~~s~~g~~~~~tF~~~G~Y~Y~C~--pH~~~GM~G~V~Vg~~ 89 (116)
T TIGR02375 16 YIRAAPGDTVTFVPTDKGHNVETIKGMIPEG---AEAFKSKINEEYTVTVTEEGVYGVKCT--PHYGMGMVALIQVGDP 89 (116)
T ss_pred EEEECCCCEEEEEECCCCeeEEEccCCCcCC---cccccCCCCCEEEEEeCCCEEEEEEcC--CCccCCCEEEEEECCC
Confidence 5799999999999987789988643211111 111111112334788999999999998 8999999999999874
No 9
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=97.24 E-value=0.0021 Score=46.23 Aligned_cols=70 Identities=16% Similarity=0.255 Sum_probs=47.3
Q ss_pred CCeeeeCCEEEEEeCC-CCCeEEEEcccCCCCCCCCCCceeccCCc-eEEEecccccEEEEcCCCCcccCCCeEEEEee
Q 029432 57 YHTFAIGDSLLFLYPP-SQDSVIQVTAQSYDSCKLKDPILYMNNGN-SLFNITKEGNFYFTSGEPGHCQKKQKLHITVG 133 (193)
Q Consensus 57 ~~~F~vGD~LvF~y~~-~~hsV~~V~~~~Y~~C~~s~pi~~~~~G~-~~v~L~~~G~~YFicg~~gHC~~GmKl~I~V~ 133 (193)
..+.++||+|.|+... ..|+|.-.+.. ...=+...+. ...|. ..++++++|+|-|.|.... .||-.|.|.
T Consensus 12 ~i~v~~GdtVt~~N~d~~~Hnv~~~~g~-~~~~~~~~~~--~~~g~~~~~tf~~~G~y~y~C~~Hp----~M~G~v~V~ 83 (83)
T TIGR02657 12 ELHVKVGDTVTWINREAMPHNVHFVAGV-LGEAALKGPM--MKKEQAYSLTFTEAGTYDYHCTPHP----FMRGKVVVE 83 (83)
T ss_pred EEEECCCCEEEEEECCCCCccEEecCCC-Cccccccccc--cCCCCEEEEECCCCEEEEEEcCCCC----CCeEEEEEC
Confidence 4689999999999874 48999865422 1110111111 12333 4788999999999999855 499998874
No 10
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=96.95 E-value=0.0034 Score=50.45 Aligned_cols=74 Identities=15% Similarity=0.263 Sum_probs=48.8
Q ss_pred CCeeeeCCEEEEEeCCC----CCeEEEEccc-CCC------------CCCCCCCceeccCC-----ceEEEecccccEEE
Q 029432 57 YHTFAIGDSLLFLYPPS----QDSVIQVTAQ-SYD------------SCKLKDPILYMNNG-----NSLFNITKEGNFYF 114 (193)
Q Consensus 57 ~~~F~vGD~LvF~y~~~----~hsV~~V~~~-~Y~------------~C~~s~pi~~~~~G-----~~~v~L~~~G~~YF 114 (193)
..+++.||++.|...+. .|.....++. .+. .|....+. .+| .-+++++++|+|||
T Consensus 53 ~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~~~~~i~p~~---~~g~~~~~~~tf~f~~aGtywy 129 (148)
T TIGR03095 53 TIVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFVAGTGFLPPP---KSGKFGYTDFTYHFSTAGTYWY 129 (148)
T ss_pred EEEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCccccCcccCCC---CCCccceeEEEEECCCCeEEEE
Confidence 34679999999998753 4666554321 110 12111111 122 33677789999999
Q ss_pred EcCCCCcccCCCeEEEEee
Q 029432 115 TSGEPGHCQKKQKLHITVG 133 (193)
Q Consensus 115 icg~~gHC~~GmKl~I~V~ 133 (193)
.|..++|=+.||+-.|.|.
T Consensus 130 hC~~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 130 LCTYPGHAENGMYGKIVVK 148 (148)
T ss_pred EcCChhHHHCCCEEEEEEC
Confidence 9999999999999888873
No 11
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=96.48 E-value=0.015 Score=49.02 Aligned_cols=77 Identities=16% Similarity=0.210 Sum_probs=48.5
Q ss_pred eeeCCEEEEEeCC---CCCeEEEEc-ccCCCCCCC---CCCceec-------------cCCce-EEEe-c-ccccEEEEc
Q 029432 60 FAIGDSLLFLYPP---SQDSVIQVT-AQSYDSCKL---KDPILYM-------------NNGNS-LFNI-T-KEGNFYFTS 116 (193)
Q Consensus 60 F~vGD~LvF~y~~---~~hsV~~V~-~~~Y~~C~~---s~pi~~~-------------~~G~~-~v~L-~-~~G~~YFic 116 (193)
.-.|-++.|+|.+ -.|++..|. ...+..+.. .+.+..+ ..|.+ ...+ + .+|.||++|
T Consensus 90 VPAGw~V~i~f~N~~~l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~~~~~~~l~aG~YwlvC 169 (196)
T PF06525_consen 90 VPAGWNVQITFTNQESLPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSASGVYNDLPAGYYWLVC 169 (196)
T ss_pred EcCCCEEEEEEEcCCCCCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCceeeEEEccCCCceEEEEc
Confidence 3457788888854 369998883 333333321 1222110 12222 2122 2 689999999
Q ss_pred CCCCcccCCCeEEEEeeCCC
Q 029432 117 GEPGHCQKKQKLHITVGNVS 136 (193)
Q Consensus 117 g~~gHC~~GmKl~I~V~~~~ 136 (193)
+.+||-+.||-..+.|.+.-
T Consensus 170 ~ipGHA~sGMw~~LiVs~~v 189 (196)
T PF06525_consen 170 GIPGHAESGMWGVLIVSSNV 189 (196)
T ss_pred cCCChhhcCCEEEEEEecCc
Confidence 99999999999999988654
No 12
>PF00812 Ephrin: Ephrin; InterPro: IPR001799 Ephrins are a family of proteins [] that are ligands of class V (EPH-related) receptor protein-tyrosine kinases (see IPR001426 from INTERPRO). These receptors and their ligands have been implicated in regulating neuronal axon guidance and in patterning of the developing nervous system and may also serve a patterning and compartmentalisation role outside of the nervous system as well. Ephrins are membrane-attached proteins of 205 to 340 residues. Attachment appears to be crucial for their normal function. Type-A ephrins are linked to the membrane via a glycosylphosphatidylinositol (GPI)-linkage, while type-B ephrins are type-I membrane proteins.; GO: 0016020 membrane; PDB: 3HEI_P 3CZU_B 3MBW_B 1KGY_E 1IKO_P 2WO3_B 2I85_A 2VSK_B 3GXU_B 2VSM_B ....
Probab=96.35 E-value=0.002 Score=51.87 Aligned_cols=75 Identities=33% Similarity=0.626 Sum_probs=46.6
Q ss_pred eeeeCCEEEEEeCC---C--------CCeEEEEcccCCCCCCCC-CCceecc-------CCceEEEec------------
Q 029432 59 TFAIGDSLLFLYPP---S--------QDSVIQVTAQSYDSCKLK-DPILYMN-------NGNSLFNIT------------ 107 (193)
Q Consensus 59 ~F~vGD~LvF~y~~---~--------~hsV~~V~~~~Y~~C~~s-~pi~~~~-------~G~~~v~L~------------ 107 (193)
..++||.|.+-=+. . ...+..|++++|+.|+.. .+...+. .|..+|++.
T Consensus 25 ~V~i~D~ldIiCP~~~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~l~~C~~P~~~~~~~kft~kFq~fSP~p~G~E 104 (145)
T PF00812_consen 25 EVRIGDYLDIICPHYEPGGPPPEEYEYYILYMVSEEGYESCSLTSRPRLLWECDRPEAPHGPKKFTIKFQEFSPFPLGLE 104 (145)
T ss_dssp EE-TTEEEEEEE--SSSSSSSCSSS-BEEEEEE-HHHHHHTBSSTSEEEEEEE-TTTSTTSSEEEEEESSSS-SSTTSSS
T ss_pred EecCCCEEEEECCCCCCCCCCCCCceEEEEEEEcHHHhcccCCCCCCcEEEEeCCCCCCCCCcEEEEEEEECCCCCCCee
Confidence 67889999986442 2 346788999999999963 3333321 234455431
Q ss_pred -ccc-cEEEEcCC-----------CCcccC-CCeEEEEee
Q 029432 108 -KEG-NFYFTSGE-----------PGHCQK-KQKLHITVG 133 (193)
Q Consensus 108 -~~G-~~YFicg~-----------~gHC~~-GmKl~I~V~ 133 (193)
++| +||||+.- +|-|.. .|||.+.|.
T Consensus 105 F~pG~~YY~ISts~g~~~g~~~~~gG~C~~~~mkl~~~v~ 144 (145)
T PF00812_consen 105 FQPGHDYYYISTSTGTQEGLDNRRGGLCLSHNMKLRIKVG 144 (145)
T ss_dssp --TTEEEEEEEEESSSSTTTTSSBSCHHHEEEEEEEEECT
T ss_pred ecCCCeEEEEEccCCCCCCcccccccccCcCeeEEEEecC
Confidence 466 48899862 233765 689998875
No 13
>KOG3858 consensus Ephrin, ligand for Eph receptor tyrosine kinase [Signal transduction mechanisms]
Probab=96.17 E-value=0.15 Score=44.15 Aligned_cols=79 Identities=27% Similarity=0.488 Sum_probs=47.4
Q ss_pred eeeeCCEEEEE---eCCC-C-----CeEEEEcccCCCCCCC-CCCceecc----CCce--------------EEEecccc
Q 029432 59 TFAIGDSLLFL---YPPS-Q-----DSVIQVTAQSYDSCKL-KDPILYMN----NGNS--------------LFNITKEG 110 (193)
Q Consensus 59 ~F~vGD~LvF~---y~~~-~-----hsV~~V~~~~Y~~C~~-s~pi~~~~----~G~~--------------~v~L~~~G 110 (193)
-.++||.|-+- |+.+ . .-++.|++++|+.|+. +.+...+. +.+. -+++ ++|
T Consensus 46 ~v~igD~ldIiCP~~e~~~~~~~E~yilYmV~~~~y~~C~~~s~~~~~~~C~rP~~~~kfsikFq~ftP~p~G~EF-~pG 124 (233)
T KOG3858|consen 46 YVQIGDYLDIICPHYEEGGPEGYEYYILYMVSEEEYDLCELRSKPFKRWECNRPSTPLKFSIKFQRFTPFPLGFEF-QPG 124 (233)
T ss_pred EeccCCEEEEECCCCCCCCCCcceEEEEEEeChHHhhhhhccCCCcEEEEecCCCcchhhhhhheecCCCCCCccc-cCC
Confidence 45668888774 3322 1 2457899999999996 44433221 1111 1122 466
Q ss_pred -cEEEEcCC-----------CCcccC-CCeEEEEeeCCCCC
Q 029432 111 -NFYFTSGE-----------PGHCQK-KQKLHITVGNVSAE 138 (193)
Q Consensus 111 -~~YFicg~-----------~gHC~~-GmKl~I~V~~~~~~ 138 (193)
+||||++- +|-|.. .||+.+.|......
T Consensus 125 ~~YY~IStStg~~~g~~~~~ggvc~~~~mk~~~~V~~~~~~ 165 (233)
T KOG3858|consen 125 HTYYYISTSTGDAEGLCNLRGGVCVTRNMKLLMKVGQSPRS 165 (233)
T ss_pred CeEEEEeCCCccccccchhhCCEeccCCceEEEEecccCCC
Confidence 58888862 234444 58999999876543
No 14
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=95.46 E-value=0.014 Score=43.36 Aligned_cols=63 Identities=16% Similarity=0.158 Sum_probs=28.9
Q ss_pred CCeeeeCC--EEEEEeC-CCCCeEEEEcccCCCCCCCCCCceeccCCc-eEEEe--cccccEEEEcCCCCcccCCCeEEE
Q 029432 57 YHTFAIGD--SLLFLYP-PSQDSVIQVTAQSYDSCKLKDPILYMNNGN-SLFNI--TKEGNFYFTSGEPGHCQKKQKLHI 130 (193)
Q Consensus 57 ~~~F~vGD--~LvF~y~-~~~hsV~~V~~~~Y~~C~~s~pi~~~~~G~-~~v~L--~~~G~~YFicg~~gHC~~GmKl~I 130 (193)
..+++.|+ +|+|+.. ...|++.. .+ -+-......|. .++++ .++|.|=|+|+...+ ||-.|
T Consensus 36 ~i~v~~G~~v~l~~~N~~~~~h~~~i-~~--------~~~~~~l~~g~~~~~~f~~~~~G~y~~~C~~~~~----m~G~l 102 (104)
T PF13473_consen 36 TITVKAGQPVTLTFTNNDSRPHEFVI-PD--------LGISKVLPPGETATVTFTPLKPGEYEFYCTMHPN----MKGTL 102 (104)
T ss_dssp EEEEETTCEEEEEEEE-SSS-EEEEE-GG--------GTEEEEE-TT-EEEEEEEE-S-EEEEEB-SSS-T----TB---
T ss_pred EEEEcCCCeEEEEEEECCCCcEEEEE-CC--------CceEEEECCCCEEEEEEcCCCCEEEEEEcCCCCc----ceecc
Confidence 56999999 4455443 23455533 21 11112233343 35555 899999999997664 55555
Q ss_pred Ee
Q 029432 131 TV 132 (193)
Q Consensus 131 ~V 132 (193)
.|
T Consensus 103 iV 104 (104)
T PF13473_consen 103 IV 104 (104)
T ss_dssp --
T ss_pred cC
Confidence 43
No 15
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=94.91 E-value=0.041 Score=46.17 Aligned_cols=30 Identities=20% Similarity=0.395 Sum_probs=26.6
Q ss_pred cccccEEEEcCCCCcccCCCeEEEEeeCCC
Q 029432 107 TKEGNFYFTSGEPGHCQKKQKLHITVGNVS 136 (193)
Q Consensus 107 ~~~G~~YFicg~~gHC~~GmKl~I~V~~~~ 136 (193)
.++|.||++|+.+||-+.||=..+.|.+.-
T Consensus 159 ~~~G~YwlvCgipGHAesGMw~~lIVSs~v 188 (195)
T TIGR03094 159 TSAGKYWLVCGITGHAESGMWAVVIVSSNV 188 (195)
T ss_pred CCCeeEEEEcccCChhhcCcEEEEEEecCc
Confidence 479999999999999999999888887654
No 16
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=92.11 E-value=0.26 Score=40.34 Aligned_cols=78 Identities=21% Similarity=0.316 Sum_probs=48.6
Q ss_pred cCCeeeeCCEEEEEeCCCCCeEEEEcc--cCC-----------CCCCCCCCc-eeccCC---ceEEEecccccEEEEcCC
Q 029432 56 KYHTFAIGDSLLFLYPPSQDSVIQVTA--QSY-----------DSCKLKDPI-LYMNNG---NSLFNITKEGNFYFTSGE 118 (193)
Q Consensus 56 ~~~~F~vGD~LvF~y~~~~hsV~~V~~--~~Y-----------~~C~~s~pi-~~~~~G---~~~v~L~~~G~~YFicg~ 118 (193)
++..++.|-+++|.-.....-+.+.+- ++. +.=...++. .....| .-++.++.+|.|=|+|.+
T Consensus 63 ~~~~v~aG~tv~~v~~n~~el~hef~~~~~~~~~~~~~~~~~~~Dme~d~~~~v~L~PG~s~elvv~ft~~g~ye~~C~i 142 (158)
T COG4454 63 SSFEVKAGETVRFVLKNEGELKHEFTMDAPDKNLEHVTHMILADDMEHDDPNTVTLAPGKSGELVVVFTGAGKYEFACNI 142 (158)
T ss_pred CcccccCCcEEeeeecCcccceEEEeccCccccchhHHHhhhCCccccCCcceeEeCCCCcEEEEEEecCCccEEEEecC
Confidence 355788899998877654433333211 110 000001111 112233 336778899999999999
Q ss_pred CCcccCCCeEEEEee
Q 029432 119 PGHCQKKQKLHITVG 133 (193)
Q Consensus 119 ~gHC~~GmKl~I~V~ 133 (193)
+||=+.||.-.|+|.
T Consensus 143 PGHy~AGM~g~itV~ 157 (158)
T COG4454 143 PGHYEAGMVGEITVS 157 (158)
T ss_pred CCcccCCcEEEEEeC
Confidence 999999999999985
No 17
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=90.56 E-value=0.42 Score=38.18 Aligned_cols=54 Identities=13% Similarity=0.186 Sum_probs=32.9
Q ss_pred cCCeeeeCCEEEEEeCCC---CCeEEEEcccCCCCCCCCCCceeccCCce---EEEecccccEEEEcCC
Q 029432 56 KYHTFAIGDSLLFLYPPS---QDSVIQVTAQSYDSCKLKDPILYMNNGNS---LFNITKEGNFYFTSGE 118 (193)
Q Consensus 56 ~~~~F~vGD~LvF~y~~~---~hsV~~V~~~~Y~~C~~s~pi~~~~~G~~---~v~L~~~G~~YFicg~ 118 (193)
+..+++.||.+.+.+.+. .|.+.- .+|. . ......|.+ +|+.+++|.|.|.|+.
T Consensus 61 ~~I~VkaGD~Vtl~vtN~d~~~H~f~i---~~~g---i---s~~I~pGet~TitF~adKpG~Y~y~C~~ 120 (135)
T TIGR03096 61 EALVVKKGTPVKVTVENKSPISEGFSI---DAYG---I---SEVIKAGETKTISFKADKAGAFTIWCQL 120 (135)
T ss_pred CEEEECCCCEEEEEEEeCCCCccceEE---CCCC---c---ceEECCCCeEEEEEECCCCEEEEEeCCC
Confidence 355889999998877532 243332 2232 1 112233433 4667899999999985
No 18
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=88.24 E-value=1.9 Score=38.48 Aligned_cols=75 Identities=19% Similarity=0.140 Sum_probs=48.1
Q ss_pred CeeeeCCEEEEEeCCC-----CCeEEEEcccCCCCCCCCCCceeccCCce---EEEecccccEEEEcCC----CCcccCC
Q 029432 58 HTFAIGDSLLFLYPPS-----QDSVIQVTAQSYDSCKLKDPILYMNNGNS---LFNITKEGNFYFTSGE----PGHCQKK 125 (193)
Q Consensus 58 ~~F~vGD~LvF~y~~~-----~hsV~~V~~~~Y~~C~~s~pi~~~~~G~~---~v~L~~~G~~YFicg~----~gHC~~G 125 (193)
.+++.||.+..++.+. .|++..=-.... +..........|.+ .|+++.+|+|||-|.. ..|=..|
T Consensus 61 irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~~~---dg~~~~~~I~PG~t~ty~F~~~~~Gty~YH~H~~~~~~~q~~~G 137 (311)
T TIGR02376 61 IRVHEGDYVELTLINPPTNTMPHNVDFHAATGA---LGGAALTQVNPGETATLRFKATRPGAFVYHCAPPGMVPWHVVSG 137 (311)
T ss_pred EEEECCCEEEEEEEeCCCCCCceeeeecCCCcc---CCCCcceeECCCCeEEEEEEcCCCEEEEEEcCCCCchhHHhhcC
Confidence 5889999999888654 455543110000 00011122334443 6778899999999995 3488899
Q ss_pred CeEEEEeeCC
Q 029432 126 QKLHITVGNV 135 (193)
Q Consensus 126 mKl~I~V~~~ 135 (193)
|.-.+.|...
T Consensus 138 l~G~liV~~~ 147 (311)
T TIGR02376 138 MNGAIMVLPR 147 (311)
T ss_pred cceEEEeecc
Confidence 9999999864
No 19
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=87.01 E-value=3.1 Score=32.91 Aligned_cols=29 Identities=17% Similarity=0.357 Sum_probs=22.1
Q ss_pred eEEEec----cccc-EEEEcCCCCcccCCCeEEEE
Q 029432 102 SLFNIT----KEGN-FYFTSGEPGHCQKKQKLHIT 131 (193)
Q Consensus 102 ~~v~L~----~~G~-~YFicg~~gHC~~GmKl~I~ 131 (193)
++|+++ ++|. |=|+|++|||=. .||-.++
T Consensus 91 ~svtF~~~~l~~g~~Y~f~CSFPGH~~-~MkG~l~ 124 (125)
T TIGR02695 91 TSVTFDVSKLSAGEDYTFFCSFPGHWA-MMRGTVK 124 (125)
T ss_pred EEEEEECCCCCCCCcceEEEcCCCcHH-hceEEEe
Confidence 456665 4675 999999999986 6887654
No 20
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=84.03 E-value=0.8 Score=35.04 Aligned_cols=79 Identities=15% Similarity=0.076 Sum_probs=47.1
Q ss_pred CCeeeeCCEEEEEeCCC---CCeEEE----Eccc-CCCC--CCCCCCceeccCCceEEEecc-cccEEEEcCCCCcccCC
Q 029432 57 YHTFAIGDSLLFLYPPS---QDSVIQ----VTAQ-SYDS--CKLKDPILYMNNGNSLFNITK-EGNFYFTSGEPGHCQKK 125 (193)
Q Consensus 57 ~~~F~vGD~LvF~y~~~---~hsV~~----V~~~-~Y~~--C~~s~pi~~~~~G~~~v~L~~-~G~~YFicg~~gHC~~G 125 (193)
..+++.||+|..++.+. .+++.- +..+ ..|. .....++....+-...|+++. +|+|||-|...+|=..|
T Consensus 27 tI~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~~~~~~~G 106 (117)
T PF07732_consen 27 TIRVREGDTVRITVTNNLDEPTSIHWHGLHQPPSPWMDGVPGVTQCPIAPGESFTYEFTANQQAGTYWYHSHVHGQQVMG 106 (117)
T ss_dssp EEEEETTEEEEEEEEEESSSGBSEEEETSBSTTGGGGSGGTTTSGSSBSTTEEEEEEEEESSCSEEEEEEECSTTHHHTT
T ss_pred EEEEEcCCeeEEEEEeccccccccccceeeeeeeeecCCcccccceeEEeecceeeeEeeeccccceeEeeCCCchhcCc
Confidence 35889999999999742 334432 1111 0111 111112221111123678888 99999999998865599
Q ss_pred CeEEEEeeCC
Q 029432 126 QKLHITVGNV 135 (193)
Q Consensus 126 mKl~I~V~~~ 135 (193)
|--.+.|...
T Consensus 107 L~G~~iV~~~ 116 (117)
T PF07732_consen 107 LYGAIIVEPP 116 (117)
T ss_dssp EEEEEEEE-T
T ss_pred CEEEEEEcCC
Confidence 9999988753
No 21
>PRK02888 nitrous-oxide reductase; Validated
Probab=83.21 E-value=4.7 Score=39.69 Aligned_cols=67 Identities=13% Similarity=0.168 Sum_probs=41.6
Q ss_pred CCeeeeCCEEEEEeCCC------CCeEEEEcccCCCCCCCCCCceeccCCce---EEEecccccEEEEcCC---CCcccC
Q 029432 57 YHTFAIGDSLLFLYPPS------QDSVIQVTAQSYDSCKLKDPILYMNNGNS---LFNITKEGNFYFTSGE---PGHCQK 124 (193)
Q Consensus 57 ~~~F~vGD~LvF~y~~~------~hsV~~V~~~~Y~~C~~s~pi~~~~~G~~---~v~L~~~G~~YFicg~---~gHC~~ 124 (193)
..++++||.+.|...+- .|+... ..|. .......|.+ +|+.++||.|||+|+. .+| .
T Consensus 556 ~i~Vk~GDeVt~~lTN~d~~~DViHGF~I---p~~n------I~~dv~PG~t~svtF~adkPGvy~~~CtefCGa~H--~ 624 (635)
T PRK02888 556 EFTVKQGDEVTVIVTNLDKVEDLTHGFAI---PNYG------VNMEVAPQATASVTFTADKPGVYWYYCTWFCHALH--M 624 (635)
T ss_pred eEEecCCCEEEEEEEeCCcccccccceee---cccC------ccEEEcCCceEEEEEEcCCCEEEEEECCcccccCc--c
Confidence 35789999999999752 222222 1111 1111223332 5667899999999996 344 3
Q ss_pred CCeEEEEeeC
Q 029432 125 KQKLHITVGN 134 (193)
Q Consensus 125 GmKl~I~V~~ 134 (193)
+|+-.|.|.+
T Consensus 625 ~M~G~~iVep 634 (635)
T PRK02888 625 EMRGRMLVEP 634 (635)
T ss_pred cceEEEEEEe
Confidence 7888888864
No 22
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=80.25 E-value=13 Score=34.51 Aligned_cols=27 Identities=22% Similarity=0.309 Sum_probs=19.6
Q ss_pred EEEecccccEEEEcCCCCcccCCCeEEEEeeC
Q 029432 103 LFNITKEGNFYFTSGEPGHCQKKQKLHITVGN 134 (193)
Q Consensus 103 ~v~L~~~G~~YFicg~~gHC~~GmKl~I~V~~ 134 (193)
+++| ++|+|-|+|+. | ..||-.|+|..
T Consensus 91 ~~~L-~pGtY~~~C~~--~--~~~~g~l~Vtg 117 (375)
T PRK10378 91 TANL-QPGEYDMTCGL--L--TNPKGKLIVKG 117 (375)
T ss_pred EEec-CCceEEeecCc--C--CCCCceEEEeC
Confidence 4555 79999999976 4 33577788864
No 23
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=78.72 E-value=1.3 Score=33.30 Aligned_cols=27 Identities=30% Similarity=0.301 Sum_probs=12.5
Q ss_pred CCCCCCchHHHHHHHHHHHHHhhhccceeeE
Q 029432 1 MANPRSPRFQLLFAFQLLLLLQLQTKSFCHQ 31 (193)
Q Consensus 1 m~~~~~~~~~~l~~~~~~~l~~~~~~a~A~~ 31 (193)
|+ |+.|+||.+++ +++|.++++++|.+
T Consensus 1 Ma---SK~~llL~l~L-A~lLlisSevaa~~ 27 (95)
T PF07172_consen 1 MA---SKAFLLLGLLL-AALLLISSEVAARE 27 (95)
T ss_pred Cc---hhHHHHHHHHH-HHHHHHHhhhhhHH
Confidence 66 45664444433 33333444555543
No 24
>PLN02604 oxidoreductase
Probab=76.47 E-value=13 Score=35.86 Aligned_cols=77 Identities=16% Similarity=0.157 Sum_probs=48.8
Q ss_pred CCeeeeCCEEEEEeCCCC----CeEE-----EEcccCCCCCC--CCCCceeccCCc---eEEEecccccEEEEcCCCCcc
Q 029432 57 YHTFAIGDSLLFLYPPSQ----DSVI-----QVTAQSYDSCK--LKDPILYMNNGN---SLFNITKEGNFYFTSGEPGHC 122 (193)
Q Consensus 57 ~~~F~vGD~LvF~y~~~~----hsV~-----~V~~~~Y~~C~--~s~pi~~~~~G~---~~v~L~~~G~~YFicg~~gHC 122 (193)
..+++.||.++++..+.- |++. +.....+|.=. ..-++ ..|. ..|+++.+|++||=|-...|-
T Consensus 56 ~i~~~~Gd~v~v~v~N~l~~~~~~iH~HG~~~~~~~~~DG~~~~tq~~i---~pg~s~~y~f~~~~~Gt~wyH~H~~~q~ 132 (566)
T PLN02604 56 TILAQQGDTVIVELKNSLLTENVAIHWHGIRQIGTPWFDGTEGVTQCPI---LPGETFTYEFVVDRPGTYLYHAHYGMQR 132 (566)
T ss_pred cEEEECCCEEEEEEEeCCCCCCCCEEeCCCCCCCCccccCCCccccCcc---CCCCeEEEEEEcCCCEEEEEeeCcHHHH
Confidence 468999999999886431 2222 11111011100 00122 2333 367788999999999999999
Q ss_pred cCCCeEEEEeeCCC
Q 029432 123 QKKQKLHITVGNVS 136 (193)
Q Consensus 123 ~~GmKl~I~V~~~~ 136 (193)
..||.-.|.|....
T Consensus 133 ~~Gl~G~liV~~~~ 146 (566)
T PLN02604 133 EAGLYGSIRVSLPR 146 (566)
T ss_pred hCCCeEEEEEEecC
Confidence 99999999998643
No 25
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=73.53 E-value=12 Score=31.08 Aligned_cols=68 Identities=19% Similarity=0.179 Sum_probs=40.1
Q ss_pred CeeeeCCEEEEEeCCCCCeEEEEcccCCCCCCCCCCceec-cCCc---eEEEecccccEEEEcCC---CCcccCCCeEEE
Q 029432 58 HTFAIGDSLLFLYPPSQDSVIQVTAQSYDSCKLKDPILYM-NNGN---SLFNITKEGNFYFTSGE---PGHCQKKQKLHI 130 (193)
Q Consensus 58 ~~F~vGD~LvF~y~~~~hsV~~V~~~~Y~~C~~s~pi~~~-~~G~---~~v~L~~~G~~YFicg~---~gHC~~GmKl~I 130 (193)
..+.+|+.+.|+-.+ .+|.. +|-- ..-.++.. -.|. ..++.+++|.|++.|+. .+| ..|+..|
T Consensus 119 l~vp~g~~v~~~~ts--~DV~H----sf~i--p~~~~k~da~PG~~~~~~~~~~~~G~y~~~c~e~cG~~h--~~M~~~v 188 (201)
T TIGR02866 119 LVVPAGTPVRLQVTS--KDVIH----SFWV--PELGGKIDAIPGQYNALWFNADEPGVYYGYCAELCGAGH--SLMLFKV 188 (201)
T ss_pred EEEEcCCEEEEEEEe--Cchhh----cccc--cccCceEEecCCcEEEEEEEeCCCEEEEEEehhhCCcCc--cCCeEEE
Confidence 367888888888763 23331 1111 11111111 1232 25678899999999987 344 5599999
Q ss_pred EeeCC
Q 029432 131 TVGNV 135 (193)
Q Consensus 131 ~V~~~ 135 (193)
.|.+.
T Consensus 189 ~v~~~ 193 (201)
T TIGR02866 189 VVVER 193 (201)
T ss_pred EEECH
Confidence 98753
No 26
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=72.11 E-value=6.8 Score=30.11 Aligned_cols=64 Identities=19% Similarity=0.219 Sum_probs=38.0
Q ss_pred CCeeeeCCEEEEEeCCC--CCeEEEEcccCCCCCCCCCCcee-ccCCc---eEEEecccccEEEEcCCCCcccCC---Ce
Q 029432 57 YHTFAIGDSLLFLYPPS--QDSVIQVTAQSYDSCKLKDPILY-MNNGN---SLFNITKEGNFYFTSGEPGHCQKK---QK 127 (193)
Q Consensus 57 ~~~F~vGD~LvF~y~~~--~hsV~~V~~~~Y~~C~~s~pi~~-~~~G~---~~v~L~~~G~~YFicg~~gHC~~G---mK 127 (193)
...+..|+.+.|+-.+. -|+... . ++ .++. .-.|. -.++.+++|.|++.|.. .|..| |+
T Consensus 47 ~l~lp~g~~v~~~ltS~DViHsf~i-p--~~-------~~k~d~~PG~~~~~~~~~~~~G~y~~~C~e--~CG~gH~~M~ 114 (120)
T PF00116_consen 47 ELVLPAGQPVRFHLTSEDVIHSFWI-P--EL-------GIKMDAIPGRTNSVTFTPDKPGTYYGQCAE--YCGAGHSFMP 114 (120)
T ss_dssp EEEEETTSEEEEEEEESSS-EEEEE-T--TC-------TEEEEEBTTCEEEEEEEESSSEEEEEEE-S--SSSTTGGG-E
T ss_pred eecccccceEeEEEEcCCccccccc-c--cc-------CcccccccccceeeeeeeccCCcEEEcCcc--ccCcCcCCCe
Confidence 44678888888888641 233332 1 11 1111 12343 25677899999999984 78777 88
Q ss_pred EEEEe
Q 029432 128 LHITV 132 (193)
Q Consensus 128 l~I~V 132 (193)
..|.|
T Consensus 115 ~~v~V 119 (120)
T PF00116_consen 115 GKVIV 119 (120)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 77776
No 27
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=67.87 E-value=12 Score=35.83 Aligned_cols=79 Identities=10% Similarity=0.041 Sum_probs=49.3
Q ss_pred CCeeeeCCEEEEEeCCCC----CeEE-----EEcccCC-CC--CCCCCCceeccCCceEEEecccccEEEEcCCCCcccC
Q 029432 57 YHTFAIGDSLLFLYPPSQ----DSVI-----QVTAQSY-DS--CKLKDPILYMNNGNSLFNITKEGNFYFTSGEPGHCQK 124 (193)
Q Consensus 57 ~~~F~vGD~LvF~y~~~~----hsV~-----~V~~~~Y-~~--C~~s~pi~~~~~G~~~v~L~~~G~~YFicg~~gHC~~ 124 (193)
..+++.||.|+++..+.- +++. +. ...| |. .-..-++.-..+-...|+++.+|++||-|-...|-..
T Consensus 33 ~i~~~~Gd~v~v~v~N~l~~~~t~iHwHGl~~~-~~~~~DG~~~vtq~~I~PG~s~~y~f~~~~~Gt~wyH~H~~~q~~~ 111 (541)
T TIGR03388 33 TIRAQAGDTIVVELTNKLHTEGVVIHWHGIRQI-GTPWADGTAGVTQCAINPGETFIYNFVVDRPGTYFYHGHYGMQRSA 111 (541)
T ss_pred eEEEEcCCEEEEEEEECCCCCCccEEecCcCCc-CCcccCCCCccccCCcCCCCEEEEEEEcCCCEEEEEEecchHHhhc
Confidence 458999999999886532 2222 21 1111 11 0001122211112236788999999999999999999
Q ss_pred CCeEEEEeeCCC
Q 029432 125 KQKLHITVGNVS 136 (193)
Q Consensus 125 GmKl~I~V~~~~ 136 (193)
||.-.|.|....
T Consensus 112 Gl~G~liV~~~~ 123 (541)
T TIGR03388 112 GLYGSLIVDVPD 123 (541)
T ss_pred cceEEEEEecCC
Confidence 999999998653
No 28
>TIGR02228 sigpep_I_arch signal peptidase I, archaeal type. This model represents signal peptidase I from most archaea, a subunit of the eukaryotic endoplasmic reticulum signal peptidase I complex, and an apparent signal peptidase I from a small number of bacteria. It is related to but does not overlap in hits with TIGR02227, the bacterial and mitochondrial signal peptidase I.
Probab=67.73 E-value=20 Score=28.97 Aligned_cols=19 Identities=16% Similarity=0.347 Sum_probs=14.7
Q ss_pred ccCCeeeeCCEEEEEeCCC
Q 029432 55 SKYHTFAIGDSLLFLYPPS 73 (193)
Q Consensus 55 A~~~~F~vGD~LvF~y~~~ 73 (193)
.....++.||.++|+.+.+
T Consensus 56 ~~~~~~~~GDIVvf~~~~~ 74 (158)
T TIGR02228 56 ADPNDIQVGDVITYKSPGF 74 (158)
T ss_pred cccCCCCCCCEEEEEECCC
Confidence 3345789999999998754
No 29
>cd06555 ASCH_PF0470_like ASC-1 homology domain, subfamily similar to Pyrococcus furiosus Pf0470. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation.
Probab=66.45 E-value=5.9 Score=30.43 Aligned_cols=30 Identities=30% Similarity=0.540 Sum_probs=18.3
Q ss_pred CeeeeCCEEEEEeCC-CCCeEEEE-cccCCCC
Q 029432 58 HTFAIGDSLLFLYPP-SQDSVIQV-TAQSYDS 87 (193)
Q Consensus 58 ~~F~vGD~LvF~y~~-~~hsV~~V-~~~~Y~~ 87 (193)
+.|++||.|+|+=.. ++--+++| .-..|++
T Consensus 30 ~~ikvGD~I~f~~~~~~~~l~v~V~~i~~Y~s 61 (109)
T cd06555 30 QQIKVGDKILFNDLDTGQQLLVKVVDIRKYDS 61 (109)
T ss_pred hcCCCCCEEEEEEcCCCcEEEEEEEEEEecCC
Confidence 589999999996543 33233444 3444543
No 30
>PF02839 CBM_5_12: Carbohydrate binding domain; InterPro: IPR003610 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM5 from CAZY and CBM12 from CAZY. These modules have a core structure consisting of a 3-stranded meander beta-sheet, which contain six aromatic groups that may be important for binding. CBM5/12 is found in proteins such as chitinase A1, chitinase B [], and endoglucanase Z []. The overall topology of the CBM is structurally similar to the C-terminal chitin-binding domains (ChBD) of chitinase A1 and chitinase B, however the binding mechanism for the ChBD may be different from that of the CBM [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0005576 extracellular region; PDB: 1ED7_A 1W1V_A 1E15_B 1UR8_A 1E6Z_B 1E6P_A 1W1T_A 1W1P_B 1UR9_A 1E6R_A ....
Probab=64.19 E-value=3.5 Score=25.45 Aligned_cols=18 Identities=28% Similarity=0.739 Sum_probs=10.8
Q ss_pred ccccccCCeeeeCCEEEE
Q 029432 51 YAKWSKYHTFAIGDSLLF 68 (193)
Q Consensus 51 Y~~WA~~~~F~vGD~LvF 68 (193)
|.+|..++....||.+.|
T Consensus 1 ~p~W~~~~~Y~~Gd~V~~ 18 (41)
T PF02839_consen 1 YPAWDPGTTYNAGDRVSY 18 (41)
T ss_dssp --B--TTCEE-TT-EEEE
T ss_pred CCCcCCCCEEcCCCEEEE
Confidence 568999999999999985
No 31
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=62.31 E-value=19 Score=31.34 Aligned_cols=90 Identities=17% Similarity=0.192 Sum_probs=51.3
Q ss_pred ecCCCCCCCCCCCCcccccccccCC-eeeeCCEEEEEeCCCCCeEEEEcccCCCCCCCCCCceeccCCc---eEEEeccc
Q 029432 34 VGDLDGWGIPTSANPLVYAKWSKYH-TFAIGDSLLFLYPPSQDSVIQVTAQSYDSCKLKDPILYMNNGN---SLFNITKE 109 (193)
Q Consensus 34 VG~~~GW~~~~~~~~~~Y~~WA~~~-~F~vGD~LvF~y~~~~hsV~~V~~~~Y~~C~~s~pi~~~~~G~---~~v~L~~~ 109 (193)
+|-.-.|.+... +|.-+..+. .+-+|..+.|+-... ||.- +|--=+....+... .|- -.++.+++
T Consensus 118 ~~~qw~W~f~Yp----~~~~~t~n~l~lPv~~~V~f~ltS~--DViH----sF~IP~l~~k~d~i-PG~~~~~~~~~~~~ 186 (247)
T COG1622 118 TAYQWKWLFIYP----DYGIATVNELVLPVGRPVRFKLTSA--DVIH----SFWIPQLGGKIDAI-PGMTTELWLTANKP 186 (247)
T ss_pred EEEEEEEEEEcc----CcCccccceEEEeCCCeEEEEEEec--hhce----eEEecCCCceeeec-CCceEEEEEecCCC
Confidence 343345655322 133344444 888899999988753 3321 11111111111111 221 25677899
Q ss_pred ccEEEEcCCCCcccCC---CeEEEEeeCCC
Q 029432 110 GNFYFTSGEPGHCQKK---QKLHITVGNVS 136 (193)
Q Consensus 110 G~~YFicg~~gHC~~G---mKl~I~V~~~~ 136 (193)
|.|+.+|.. .|..| |++.|.|.+..
T Consensus 187 G~Y~g~Cae--~CG~gH~~M~~~v~vvs~~ 214 (247)
T COG1622 187 GTYRGICAE--YCGPGHSFMRFKVIVVSQE 214 (247)
T ss_pred eEEEEEcHh--hcCCCcccceEEEEEEcHH
Confidence 999999974 67765 99999998764
No 32
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=58.54 E-value=14 Score=30.93 Aligned_cols=32 Identities=22% Similarity=0.269 Sum_probs=25.7
Q ss_pred EEEecccccEEEEcCCCCcccCC---CeEEEEeeCCC
Q 029432 103 LFNITKEGNFYFTSGEPGHCQKK---QKLHITVGNVS 136 (193)
Q Consensus 103 ~v~L~~~G~~YFicg~~gHC~~G---mKl~I~V~~~~ 136 (193)
.++.+++|.|+..|. ..|..| |++.|.|.+..
T Consensus 159 ~~~~~~~G~y~g~C~--e~CG~~H~~M~~~v~v~~~~ 193 (194)
T MTH00047 159 FFCPDRHGVFVGYCS--ELCGVGHSYMPIVIEVVDVD 193 (194)
T ss_pred EEEcCCCEEEEEEee--hhhCcCcccCcEEEEEEcCC
Confidence 456689999999997 477775 99999998653
No 33
>PLN02354 copper ion binding / oxidoreductase
Probab=57.63 E-value=88 Score=30.25 Aligned_cols=78 Identities=12% Similarity=0.019 Sum_probs=48.8
Q ss_pred CeeeeCCEEEEEeCCC--------CCeEEEEcccCCCC-CCCCCCceeccCCceEEEe-cccccEEEEcCCCCcccCCCe
Q 029432 58 HTFAIGDSLLFLYPPS--------QDSVIQVTAQSYDS-CKLKDPILYMNNGNSLFNI-TKEGNFYFTSGEPGHCQKKQK 127 (193)
Q Consensus 58 ~~F~vGD~LvF~y~~~--------~hsV~~V~~~~Y~~-C~~s~pi~~~~~G~~~v~L-~~~G~~YFicg~~gHC~~GmK 127 (193)
.+++.||+|+.+..+. -|-+.|-.....|. -...-||.-..+-..+|++ +..|+|||=+-...+-..|+.
T Consensus 60 I~~~~GD~v~V~v~N~l~~~ttiHWHGi~q~~~~~~DGv~~TQcpI~PG~sf~Y~F~~~~q~GT~WYHsH~~~Q~~~Gl~ 139 (552)
T PLN02354 60 INSTSNNNIVINVFNNLDEPFLLTWSGIQQRKNSWQDGVPGTNCPIPPGTNFTYHFQPKDQIGSYFYYPSTGMHRAAGGF 139 (552)
T ss_pred EEEeCCCEEEEEEEECCCCCcccccccccCCCCcccCCCcCCcCCCCCCCcEEEEEEeCCCCcceEEecCccceecCCcc
Confidence 4789999999887643 14454432222221 0011133322222346777 478999999988888889999
Q ss_pred EEEEeeCC
Q 029432 128 LHITVGNV 135 (193)
Q Consensus 128 l~I~V~~~ 135 (193)
-.|.|...
T Consensus 140 G~lII~~~ 147 (552)
T PLN02354 140 GGLRVNSR 147 (552)
T ss_pred ceEEEcCC
Confidence 99999754
No 34
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=54.85 E-value=32 Score=33.72 Aligned_cols=75 Identities=19% Similarity=0.172 Sum_probs=49.5
Q ss_pred CeeeeCCEEEEEeCCCC--------CeEEEEcccCCC-----CCCCCCCceeccCCceEEEe-cccccEEEEcCCCCccc
Q 029432 58 HTFAIGDSLLFLYPPSQ--------DSVIQVTAQSYD-----SCKLKDPILYMNNGNSLFNI-TKEGNFYFTSGEPGHCQ 123 (193)
Q Consensus 58 ~~F~vGD~LvF~y~~~~--------hsV~~V~~~~Y~-----~C~~s~pi~~~~~G~~~v~L-~~~G~~YFicg~~gHC~ 123 (193)
.+++.||+|+.+..+.- |-+.|-.....| .| ||.-..+-..+|++ +..|+|||=+-...+-.
T Consensus 62 I~~~~GD~v~V~V~N~L~~~ttIHWHGl~q~~t~w~DGv~~TQc----PI~PG~sftY~F~~~dq~GT~WYHsH~~~Q~~ 137 (596)
T PLN00044 62 LNVTTNWNLVVNVRNALDEPLLLTWHGVQQRKSAWQDGVGGTNC----AIPAGWNWTYQFQVKDQVGSFFYAPSTALHRA 137 (596)
T ss_pred EEEECCCEEEEEEEeCCCCCccEEECCccCCCCccccCCCCCcC----CcCCCCcEEEEEEeCCCCceeEeeccchhhhh
Confidence 47899999998875421 454443211122 34 33322222347888 47999999998888888
Q ss_pred CCCeEEEEeeCCC
Q 029432 124 KKQKLHITVGNVS 136 (193)
Q Consensus 124 ~GmKl~I~V~~~~ 136 (193)
.|+.-.|.|....
T Consensus 138 ~Gl~GalII~~~~ 150 (596)
T PLN00044 138 AGGYGAITINNRD 150 (596)
T ss_pred CcCeeEEEEcCcc
Confidence 8999999998643
No 35
>PF10377 ATG11: Autophagy-related protein 11; InterPro: IPR019460 This family consists of proteins involved in telomere maintenance. In Schizosaccharomyces pombe (fission yeast) this protein is called Taf1 (taz1 interacting factor) and is part of the telomere cap complex. In Saccharomyces cerevisiae (baker's yeast) this protein is called ATG11 and is known to be involved in vacuolar targeting and peroxisome degradation [, ].
Probab=53.83 E-value=23 Score=27.75 Aligned_cols=18 Identities=33% Similarity=0.693 Sum_probs=15.9
Q ss_pred CeeeeCCEEEEEeCCCCC
Q 029432 58 HTFAIGDSLLFLYPPSQD 75 (193)
Q Consensus 58 ~~F~vGD~LvF~y~~~~h 75 (193)
++|++||.+.|-++...|
T Consensus 41 ~~f~~GDlvLflpt~~~~ 58 (129)
T PF10377_consen 41 RNFQVGDLVLFLPTRNHN 58 (129)
T ss_pred ecCCCCCEEEEEecCCCC
Confidence 389999999999998766
No 36
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=53.64 E-value=33 Score=33.48 Aligned_cols=86 Identities=12% Similarity=0.174 Sum_probs=52.2
Q ss_pred CCCCCCCCcccccccccCCeeeeCCEEEEEeCCC---CCeE------EEEcccC--CCCCCCCCCceeccCCce--EEEe
Q 029432 40 WGIPTSANPLVYAKWSKYHTFAIGDSLLFLYPPS---QDSV------IQVTAQS--YDSCKLKDPILYMNNGNS--LFNI 106 (193)
Q Consensus 40 W~~~~~~~~~~Y~~WA~~~~F~vGD~LvF~y~~~---~hsV------~~V~~~~--Y~~C~~s~pi~~~~~G~~--~v~L 106 (193)
|++. ...|.. ....+++.||.+.+.+.+. .|.+ .+|...+ |.. ..+.+.....+.. .|..
T Consensus 488 wtiN----G~~~~~-~~pl~v~~Gervri~l~N~t~~~HpmHlHG~~f~v~~~~G~~~~--~~dTv~V~Pg~t~~~~f~a 560 (587)
T TIGR01480 488 WSFD----GEAFGL-KTPLRFNYGERLRVVLVNDTMMAHPIHLHGMWSELEDGQGEFQV--RKHTVDVPPGGKRSFRVTA 560 (587)
T ss_pred EEEC----CccCCC-CCceEecCCCEEEEEEECCCCCCcceeEcCceeeeecCCCcccc--cCCceeeCCCCEEEEEEEC
Confidence 8874 223443 2356899999999999753 2322 2332211 110 0111222222222 5667
Q ss_pred cccccEEEEcCCCCcccCCCeEEEEe
Q 029432 107 TKEGNFYFTSGEPGHCQKKQKLHITV 132 (193)
Q Consensus 107 ~~~G~~YFicg~~gHC~~GmKl~I~V 132 (193)
+.+|+++|=|-...|=+.||.-.|.|
T Consensus 561 d~pG~w~~HCH~l~H~~~GM~~~~~v 586 (587)
T TIGR01480 561 DALGRWAYHCHMLLHMEAGMFREVTV 586 (587)
T ss_pred CCCeEEEEcCCCHHHHhCcCcEEEEe
Confidence 88999999999999999999887776
No 37
>PLN02991 oxidoreductase
Probab=52.07 E-value=1.8e+02 Score=28.15 Aligned_cols=78 Identities=14% Similarity=0.051 Sum_probs=47.9
Q ss_pred CeeeeCCEEEEEeCCCC--------CeEEEEcccCCCCCC-CCCCceeccCCceEEEe-cccccEEEEcCCCCcccCCCe
Q 029432 58 HTFAIGDSLLFLYPPSQ--------DSVIQVTAQSYDSCK-LKDPILYMNNGNSLFNI-TKEGNFYFTSGEPGHCQKKQK 127 (193)
Q Consensus 58 ~~F~vGD~LvF~y~~~~--------hsV~~V~~~~Y~~C~-~s~pi~~~~~G~~~v~L-~~~G~~YFicg~~gHC~~GmK 127 (193)
.+++.||.|+.+..+.- |-+.|......|.=- ..-||.-..+-..+|++ +.+|+|||=+-...+-..|+.
T Consensus 61 I~~~~GD~v~V~V~N~L~~~ttiHWHGi~q~~~~~~DGv~~tQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~ 140 (543)
T PLN02991 61 IISVTNDNLIINVFNHLDEPFLISWSGIRNWRNSYQDGVYGTTCPIPPGKNYTYALQVKDQIGSFYYFPSLGFHKAAGGF 140 (543)
T ss_pred EEEECCCEEEEEecCCCCCCccEEECCcccCCCccccCCCCCCCccCCCCcEEEEEEeCCCCcceEEecCcchhhhCCCe
Confidence 48899999998886532 444443222222200 11233322222347888 479999998877666667888
Q ss_pred EEEEeeCC
Q 029432 128 LHITVGNV 135 (193)
Q Consensus 128 l~I~V~~~ 135 (193)
-.+.|...
T Consensus 141 G~lIV~~~ 148 (543)
T PLN02991 141 GAIRISSR 148 (543)
T ss_pred eeEEEeCC
Confidence 88888754
No 38
>PF09792 But2: Ubiquitin 3 binding protein But2 C-terminal domain; InterPro: IPR018620 This entry represents a presumed C-terminal domain of ubiquitin 3 binding proteins (But2). But2 is conserved in yeasts. It binds to Uba3 and is involved in the NEDD8 signalling pathway [].
Probab=51.72 E-value=63 Score=25.72 Aligned_cols=32 Identities=19% Similarity=0.362 Sum_probs=26.2
Q ss_pred EEEecccccEEEEcCCCCcccCCCeEEEEeeCCCC
Q 029432 103 LFNITKEGNFYFTSGEPGHCQKKQKLHITVGNVSA 137 (193)
Q Consensus 103 ~v~L~~~G~~YFicg~~gHC~~GmKl~I~V~~~~~ 137 (193)
++++.. |.-|-|.. ..|..||++...+.....
T Consensus 100 ~~~~~p-G~~y~i~~--f~Cp~g~~v~ye~~~~g~ 131 (143)
T PF09792_consen 100 TFTVSP-GNSYVINT--FPCPAGQAVSYEMSSAGD 131 (143)
T ss_pred ceEECC-CCceEeCc--EeCCCCCEEEEEEEecCC
Confidence 567766 99999985 799999999998886544
No 39
>PF14326 DUF4384: Domain of unknown function (DUF4384)
Probab=49.58 E-value=90 Score=21.98 Aligned_cols=17 Identities=18% Similarity=0.542 Sum_probs=14.0
Q ss_pred eeeeCCEEEEEeCCCCC
Q 029432 59 TFAIGDSLLFLYPPSQD 75 (193)
Q Consensus 59 ~F~vGD~LvF~y~~~~h 75 (193)
.|++||.|.|.+...++
T Consensus 2 ~~~~Ge~v~~~~~~~~~ 18 (83)
T PF14326_consen 2 VYRVGERVRFRVTSNRD 18 (83)
T ss_pred cccCCCEEEEEEEeCCC
Confidence 58999999999986544
No 40
>PLN02835 oxidoreductase
Probab=48.96 E-value=1.3e+02 Score=28.92 Aligned_cols=77 Identities=16% Similarity=0.061 Sum_probs=48.6
Q ss_pred CeeeeCCEEEEEeCCCC--------CeEEEEcccCCCC-CCCCCCceeccCCceEEEe-cccccEEEEcCCCCcccCCCe
Q 029432 58 HTFAIGDSLLFLYPPSQ--------DSVIQVTAQSYDS-CKLKDPILYMNNGNSLFNI-TKEGNFYFTSGEPGHCQKKQK 127 (193)
Q Consensus 58 ~~F~vGD~LvF~y~~~~--------hsV~~V~~~~Y~~-C~~s~pi~~~~~G~~~v~L-~~~G~~YFicg~~gHC~~GmK 127 (193)
.+++.||+|+.+..+.- |-+.|......|. ....-||.-..+-..+|++ +.+|+|||=|-...+-..|+.
T Consensus 62 I~~~~GD~v~v~v~N~L~~~ttiHWHGl~~~~~~~~DGv~~tQ~pI~PG~sf~Y~F~~~~q~GT~WYHsH~~~q~~~Gl~ 141 (539)
T PLN02835 62 LDVVTNDNIILNLINKLDQPFLLTWNGIKQRKNSWQDGVLGTNCPIPPNSNYTYKFQTKDQIGTFTYFPSTLFHKAAGGF 141 (539)
T ss_pred EEEECCCEEEEEEEeCCCCCCcEEeCCcccCCCCCCCCCccCcCCCCCCCcEEEEEEECCCCEeEEEEeCccchhcCccc
Confidence 48899999998886431 4444432222232 0111233332222346776 579999999988788888999
Q ss_pred EEEEeeC
Q 029432 128 LHITVGN 134 (193)
Q Consensus 128 l~I~V~~ 134 (193)
-.+.|..
T Consensus 142 G~lIV~~ 148 (539)
T PLN02835 142 GAINVYE 148 (539)
T ss_pred ceeEEeC
Confidence 9999864
No 41
>PLN02168 copper ion binding / pectinesterase
Probab=43.70 E-value=77 Score=30.68 Aligned_cols=80 Identities=13% Similarity=0.018 Sum_probs=49.9
Q ss_pred CCeeeeCCEEEEEeCCCC--------CeEEEEcccCCCC-CCCCCCceeccCCceEEEec-ccccEEEEcCCCCcccCCC
Q 029432 57 YHTFAIGDSLLFLYPPSQ--------DSVIQVTAQSYDS-CKLKDPILYMNNGNSLFNIT-KEGNFYFTSGEPGHCQKKQ 126 (193)
Q Consensus 57 ~~~F~vGD~LvF~y~~~~--------hsV~~V~~~~Y~~-C~~s~pi~~~~~G~~~v~L~-~~G~~YFicg~~gHC~~Gm 126 (193)
..+++.||+|+.+..+.- |-+.+-.....|. ....-||.-..+-..+|+++ .+|+|||=|-...+=..|+
T Consensus 58 ~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~~~~~~~~DGv~gtQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~Q~~~GL 137 (545)
T PLN02168 58 LLNATANDVINVNIFNNLTEPFLMTWNGLQLRKNSWQDGVRGTNCPILPGTNWTYRFQVKDQIGSYFYFPSLLLQKAAGG 137 (545)
T ss_pred cEEEECCCEEEEEEEeCCCCCccEeeCCccCCCCCCcCCCCCCcCCCCCCCcEEEEEEeCCCCceEEEecChhhhhhCcc
Confidence 348999999999886431 4544433222232 11112343322223478884 7999999987766667799
Q ss_pred eEEEEeeCCC
Q 029432 127 KLHITVGNVS 136 (193)
Q Consensus 127 Kl~I~V~~~~ 136 (193)
.-.+.|....
T Consensus 138 ~G~lII~~~~ 147 (545)
T PLN02168 138 YGAIRIYNPE 147 (545)
T ss_pred eeEEEEcCCc
Confidence 9999997643
No 42
>PLN02191 L-ascorbate oxidase
Probab=42.69 E-value=59 Score=31.52 Aligned_cols=78 Identities=12% Similarity=0.028 Sum_probs=47.9
Q ss_pred CCeeeeCCEEEEEeCCCC---------CeEEEEcccCCCC-CC-CCCCceeccCCceEEEecccccEEEEcCCCCcccCC
Q 029432 57 YHTFAIGDSLLFLYPPSQ---------DSVIQVTAQSYDS-CK-LKDPILYMNNGNSLFNITKEGNFYFTSGEPGHCQKK 125 (193)
Q Consensus 57 ~~~F~vGD~LvF~y~~~~---------hsV~~V~~~~Y~~-C~-~s~pi~~~~~G~~~v~L~~~G~~YFicg~~gHC~~G 125 (193)
..+++.||+|+.+..+.- |.+.+-....+|. -. ..-||.-..+-...|+++.+|+|||=|-...+-..|
T Consensus 55 ~i~~~~Gd~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~gvtq~pI~PG~s~~Y~f~~~~~GT~wYHsH~~~q~~~G 134 (574)
T PLN02191 55 TIDAVAGDTIVVHLTNKLTTEGLVIHWHGIRQKGSPWADGAAGVTQCAINPGETFTYKFTVEKPGTHFYHGHYGMQRSAG 134 (574)
T ss_pred eEEEEcCCEEEEEEEECCCCCCccEECCCCCCCCCccccCCCccccCCcCCCCeEEEEEECCCCeEEEEeeCcHHHHhCC
Confidence 348899999998886431 2232221111221 00 001222211222378889999999999988888999
Q ss_pred CeEEEEeeC
Q 029432 126 QKLHITVGN 134 (193)
Q Consensus 126 mKl~I~V~~ 134 (193)
|.-.+.|..
T Consensus 135 l~G~liV~~ 143 (574)
T PLN02191 135 LYGSLIVDV 143 (574)
T ss_pred CEEEEEEcc
Confidence 999999964
No 43
>PF12961 DUF3850: Domain of Unknown Function with PDB structure (DUF3850)
Probab=41.37 E-value=17 Score=26.05 Aligned_cols=13 Identities=31% Similarity=0.585 Sum_probs=11.0
Q ss_pred CCeeeeCCEEEEE
Q 029432 57 YHTFAIGDSLLFL 69 (193)
Q Consensus 57 ~~~F~vGD~LvF~ 69 (193)
...|+|||.|+++
T Consensus 26 DRdf~VGD~L~L~ 38 (72)
T PF12961_consen 26 DRDFQVGDILVLR 38 (72)
T ss_pred CCCCCCCCEEEEE
Confidence 5689999999874
No 44
>PF02362 B3: B3 DNA binding domain; InterPro: IPR003340 Two DNA binding proteins, RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species. The N-terminal regions of RAV1 and RAV2 are homologous to the AP2 DNA-binding domain (see IPR001471 from INTERPRO) present in a family of transcription factors, while the C-terminal region exhibits homology to the highly conserved C-terminal domain, designated B3, of VP1/ABI3 transcription factors []. The AP2 and B3-like domains of RAV1 bind autonomously to the CAACA and CACCTG motifs, respectively, and together achieve a high affinity and specificity of binding. It has been suggested that the AP2 and B3-like domains of RAV1 are connected by a highly flexible structure enabling the two domains to bind to the CAACA and CACCTG motifs in various spacings and orientations [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1WID_A 1YEL_A.
Probab=40.58 E-value=20 Score=25.51 Aligned_cols=21 Identities=14% Similarity=0.189 Sum_probs=13.0
Q ss_pred ccCCeeeeCCEEEEEeCCCCC
Q 029432 55 SKYHTFAIGDSLLFLYPPSQD 75 (193)
Q Consensus 55 A~~~~F~vGD~LvF~y~~~~h 75 (193)
+..+..++||.++|++.....
T Consensus 69 v~~n~L~~GD~~~F~~~~~~~ 89 (100)
T PF02362_consen 69 VRDNGLKEGDVCVFELIGNSN 89 (100)
T ss_dssp HHHCT--TT-EEEEEE-SSSC
T ss_pred HHHcCCCCCCEEEEEEecCCC
Confidence 456789999999999985333
No 45
>PLN02792 oxidoreductase
Probab=40.14 E-value=84 Score=30.32 Aligned_cols=79 Identities=11% Similarity=0.055 Sum_probs=0.0
Q ss_pred CeeeeCCEEEEEeCCCC--------CeEEEEcccCCCC-CCCCCCceeccCCceEEEe-cccccEEEEcCCCCcccCCCe
Q 029432 58 HTFAIGDSLLFLYPPSQ--------DSVIQVTAQSYDS-CKLKDPILYMNNGNSLFNI-TKEGNFYFTSGEPGHCQKKQK 127 (193)
Q Consensus 58 ~~F~vGD~LvF~y~~~~--------hsV~~V~~~~Y~~-C~~s~pi~~~~~G~~~v~L-~~~G~~YFicg~~gHC~~GmK 127 (193)
.+++.||+|+.+..+.- |.+.|-.....|. -...-||.-..+-..+|++ +++|+|||=|-...+-..|+.
T Consensus 49 I~~~~GD~v~V~v~N~L~~~ttiHWHGl~q~~~~~~DGv~~tqcPI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~ 128 (536)
T PLN02792 49 IRSLTNDNLVINVHNDLDEPFLLSWNGVHMRKNSYQDGVYGTTCPIPPGKNYTYDFQVKDQVGSYFYFPSLAVQKAAGGY 128 (536)
T ss_pred EEEECCCEEEEEEEeCCCCCcCEeCCCcccCCCCccCCCCCCcCccCCCCcEEEEEEeCCCccceEEecCcchhhhcccc
Q ss_pred EEEEeeCCC
Q 029432 128 LHITVGNVS 136 (193)
Q Consensus 128 l~I~V~~~~ 136 (193)
-.+.|....
T Consensus 129 G~liI~~~~ 137 (536)
T PLN02792 129 GSLRIYSLP 137 (536)
T ss_pred cceEEeCCc
No 46
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=38.83 E-value=45 Score=28.38 Aligned_cols=31 Identities=19% Similarity=0.348 Sum_probs=24.9
Q ss_pred EEEecccccEEEEcCCCCcccCC---CeEEEEeeCC
Q 029432 103 LFNITKEGNFYFTSGEPGHCQKK---QKLHITVGNV 135 (193)
Q Consensus 103 ~v~L~~~G~~YFicg~~gHC~~G---mKl~I~V~~~ 135 (193)
.++.+++|.||..|.. -|..| |++.|.|.+.
T Consensus 183 ~~~~~~~g~y~~~C~e--~CG~~H~~M~~~v~v~~~ 216 (228)
T MTH00140 183 SFEPKRPGVFYGQCSE--ICGANHSFMPIVVEAVPL 216 (228)
T ss_pred EEEeCCCEEEEEECcc--ccCcCcCCCeEEEEEECH
Confidence 4567899999999985 78776 8988888753
No 47
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=38.68 E-value=94 Score=29.72 Aligned_cols=79 Identities=14% Similarity=0.041 Sum_probs=45.7
Q ss_pred CCeeeeCCEEEEEeCCC---C-----CeEEEEcccCCCC--CCCCCCceeccCCceEEEe-cccccEEEEcCCCCcccCC
Q 029432 57 YHTFAIGDSLLFLYPPS---Q-----DSVIQVTAQSYDS--CKLKDPILYMNNGNSLFNI-TKEGNFYFTSGEPGHCQKK 125 (193)
Q Consensus 57 ~~~F~vGD~LvF~y~~~---~-----hsV~~V~~~~Y~~--C~~s~pi~~~~~G~~~v~L-~~~G~~YFicg~~gHC~~G 125 (193)
..+++.||+|+.+..+. . |.+.|......|. .-+.-||.-..+-...|++ +.+|+|||=|-... ...|
T Consensus 35 ~i~~~~GD~v~v~v~N~l~~~tsiHwHGl~q~~~~~~DGv~~vTq~pI~PG~s~~Y~f~~~~~~GT~WYHsH~~~-~~~G 113 (539)
T TIGR03389 35 TLYAREGDTVIVNVTNNVQYNVTIHWHGVRQLRNGWADGPAYITQCPIQPGQSYVYNFTITGQRGTLWWHAHISW-LRAT 113 (539)
T ss_pred EEEEEcCCEEEEEEEeCCCCCeeEecCCCCCCCCCCCCCCcccccCCcCCCCeEEEEEEecCCCeeEEEecCchh-hhcc
Confidence 35889999999888642 1 3333321111221 1111122221122236777 48999999998754 4569
Q ss_pred CeEEEEeeCCC
Q 029432 126 QKLHITVGNVS 136 (193)
Q Consensus 126 mKl~I~V~~~~ 136 (193)
|.-.|.|....
T Consensus 114 l~G~lIV~~~~ 124 (539)
T TIGR03389 114 VYGAIVILPKP 124 (539)
T ss_pred ceEEEEEcCCC
Confidence 99999998643
No 48
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=38.39 E-value=77 Score=30.96 Aligned_cols=78 Identities=12% Similarity=0.086 Sum_probs=45.8
Q ss_pred CCeeeeCCEEEEEeCCCC---CeEE----EEcccCCCC-CCCC-CCceeccCCceEEEecccccEEEEcCCCCcccCCCe
Q 029432 57 YHTFAIGDSLLFLYPPSQ---DSVI----QVTAQSYDS-CKLK-DPILYMNNGNSLFNITKEGNFYFTSGEPGHCQKKQK 127 (193)
Q Consensus 57 ~~~F~vGD~LvF~y~~~~---hsV~----~V~~~~Y~~-C~~s-~pi~~~~~G~~~v~L~~~G~~YFicg~~gHC~~GmK 127 (193)
..+++.||.++.++.+.- +++. .+. ...|. ...+ .+|.-..+-...|++..+|+|||=|-...+=+.|+.
T Consensus 77 ~ir~~~Gd~v~v~v~N~l~~~tsiHwHGl~~~-~~~DGvP~vt~~~I~PG~s~~Y~f~~~~~GTyWYHsH~~~q~~~GL~ 155 (587)
T TIGR01480 77 LLRWREGDTVRLRVTNTLPEDTSIHWHGILLP-FQMDGVPGVSFAGIAPGETFTYRFPVRQSGTYWYHSHSGFQEQAGLY 155 (587)
T ss_pred eEEEECCCEEEEEEEcCCCCCceEEcCCCcCC-ccccCCCcccccccCCCCeEEEEEECCCCeeEEEecCchhHhhccce
Confidence 348899999999886432 2221 111 01111 1111 122211122336788899999999987777778999
Q ss_pred EEEEeeCC
Q 029432 128 LHITVGNV 135 (193)
Q Consensus 128 l~I~V~~~ 135 (193)
-.|.|...
T Consensus 156 G~lIV~~~ 163 (587)
T TIGR01480 156 GPLIIDPA 163 (587)
T ss_pred EEEEECCC
Confidence 88888653
No 49
>KOG0674 consensus Calreticulin [Posttranslational modification, protein turnover, chaperones]
Probab=38.03 E-value=1.1e+02 Score=28.22 Aligned_cols=14 Identities=29% Similarity=0.676 Sum_probs=7.5
Q ss_pred CCcccCC-CeEEEEe
Q 029432 119 PGHCQKK-QKLHITV 132 (193)
Q Consensus 119 ~gHC~~G-mKl~I~V 132 (193)
+.-|.-| -|++|..
T Consensus 135 PDICG~~tkKVhvil 149 (406)
T KOG0674|consen 135 PDICGFGTKKVHVIL 149 (406)
T ss_pred CcccCCCCceEEEEE
Confidence 5666665 3555544
No 50
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=36.52 E-value=4.2e+02 Score=25.94 Aligned_cols=137 Identities=15% Similarity=0.059 Sum_probs=0.0
Q ss_pred CCCCCCchHHHHHHHHHHHHHhhhccceeeEEEecCCCCCCCCCCCCcccccccccC---------CeeeeCCEEEEEeC
Q 029432 1 MANPRSPRFQLLFAFQLLLLLQLQTKSFCHQYKVGDLDGWGIPTSANPLVYAKWSKY---------HTFAIGDSLLFLYP 71 (193)
Q Consensus 1 m~~~~~~~~~~l~~~~~~~l~~~~~~a~A~~~~VG~~~GW~~~~~~~~~~Y~~WA~~---------~~F~vGD~LvF~y~ 71 (193)
|.........++++.+++.+.+..+...-.+++|....-.... -.++--. ...+.||+|+.+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~v~~~~~s~l~-------~~~~vi~iNG~fPGP~I~~~~gD~ivV~v~ 74 (563)
T KOG1263|consen 2 MDGVTLLLLFLCGSLLLVFFSQAEAPIRFHTWKVTYGTASPLC-------VEKQVITINGQFPGPTINAEEGDTIVVNVV 74 (563)
T ss_pred ccchhhhHHHHHHHHHHHHHhhhcCceEEEEeeEEeeeeccCC-------ccceeEeecCCCCCCeEEEEeCCEEEEEEE
Q ss_pred CCC--------CeEEEEcccCCCCCCCCC-CceeccCCceEEEec-ccccEEEEcCCCCcccCCCeEEEEeeCCCCCC-C
Q 029432 72 PSQ--------DSVIQVTAQSYDSCKLKD-PILYMNNGNSLFNIT-KEGNFYFTSGEPGHCQKKQKLHITVGNVSAES-P 140 (193)
Q Consensus 72 ~~~--------hsV~~V~~~~Y~~C~~s~-pi~~~~~G~~~v~L~-~~G~~YFicg~~gHC~~GmKl~I~V~~~~~~~-~ 140 (193)
+.. |-|.|-.-.--|.=-.+. ||+-..+=...|+++ +.|++||-+...-|=..|+.-++.|......+ |
T Consensus 75 N~~~~~~sihWhGv~q~kn~w~DG~~~TqCPI~Pg~~~tY~F~v~~q~GT~~yh~h~~~~Ra~G~~G~liI~~~~~~p~p 154 (563)
T KOG1263|consen 75 NRLDEPFSIHWHGVRQRKNPWQDGVYITQCPIQPGENFTYRFTVKDQIGTLWYHSHVSWQRATGVFGALIINPRPGLPVP 154 (563)
T ss_pred eCCCCceEEEeccccccCCccccCCccccCCcCCCCeEEEEEEeCCcceeEEEeeccccccccCceeEEEEcCCccCCCC
Q ss_pred CCCC
Q 029432 141 AYGP 144 (193)
Q Consensus 141 ~~~p 144 (193)
-+-|
T Consensus 155 f~~p 158 (563)
T KOG1263|consen 155 FPKP 158 (563)
T ss_pred CCCC
No 51
>PF12195 End_beta_barrel: Beta barrel domain of bacteriophage endosialidase; InterPro: IPR024427 This entry represents the beta barrel domain of endosialidases which is nested in a beta propeller domain. This beta barrel domain is approximately 80 amino acids in length and represents one of the two sialic acid binding sites of the enzyme [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=35.93 E-value=17 Score=26.55 Aligned_cols=29 Identities=24% Similarity=0.366 Sum_probs=16.0
Q ss_pred CCeeeeCCEEEEEeCC-----CCCeEEEE-cccCC
Q 029432 57 YHTFAIGDSLLFLYPP-----SQDSVIQV-TAQSY 85 (193)
Q Consensus 57 ~~~F~vGD~LvF~y~~-----~~hsV~~V-~~~~Y 85 (193)
.+-..+||.+.|.-.. |.-.|..| ++..|
T Consensus 25 ~HGl~vGD~VnFsnsa~tGvSG~mTVatVid~ntF 59 (83)
T PF12195_consen 25 DHGLFVGDFVNFSNSAVTGVSGNMTVATVIDANTF 59 (83)
T ss_dssp T----TT-EEEEES-SSTT--EEEEEEEEEETTEE
T ss_pred cCceeecceEEEeccccccccccEEEEEEecCCcE
Confidence 5678999999999874 34567666 55544
No 52
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=35.61 E-value=34 Score=23.87 Aligned_cols=14 Identities=21% Similarity=0.368 Sum_probs=9.6
Q ss_pred ceeeEEEecCCCCC
Q 029432 27 SFCHQYKVGDLDGW 40 (193)
Q Consensus 27 a~A~~~~VG~~~GW 40 (193)
.+|-+|.-|+.--.
T Consensus 20 Q~APQYa~GeeP~Y 33 (65)
T PF10731_consen 20 QSAPQYAPGEEPSY 33 (65)
T ss_pred hcCcccCCCCCCCc
Confidence 46678998875444
No 53
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=35.36 E-value=72 Score=31.14 Aligned_cols=62 Identities=15% Similarity=0.204 Sum_probs=44.4
Q ss_pred ccCCeeeeCCEEEEEeCCCCCeEEEEcccCCCCCCCCC---Cce-ec-cCCce-EEEecccccEEEEc
Q 029432 55 SKYHTFAIGDSLLFLYPPSQDSVIQVTAQSYDSCKLKD---PIL-YM-NNGNS-LFNITKEGNFYFTS 116 (193)
Q Consensus 55 A~~~~F~vGD~LvF~y~~~~hsV~~V~~~~Y~~C~~s~---pi~-~~-~~G~~-~v~L~~~G~~YFic 116 (193)
-++++|..-|.+.|+|++....++.+...+.|.-+.+- ... .+ .+|++ .|.|.+.|+.|=+|
T Consensus 210 ~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~ 277 (566)
T KOG2315|consen 210 VANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVT 277 (566)
T ss_pred hhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEE
Confidence 45789999999999999888888887777777655542 111 11 24655 78999999866554
No 54
>PF04014 Antitoxin-MazE: Antidote-toxin recognition MazE; InterPro: IPR007159 This domain is found in AbrB from Bacillus subtilis. The product of the abrB gene is an ambiactive repressor and activator of the transcription of genes expressed during the transition state between vegetative growth and the onset of stationary phase and sporulation []. AbrB is thought to interact directly with the transcription initiation regions of genes under its control []. AbrB contains a helix-turn-helix structure, but this domain ends before the helix-turn-helix begins []. The product of the B. subtilis gene spoVT is another member of this family and is also a transcriptional regulator []. DNA-binding activity in this AbrB homologue requires hexamerisation []. Another family member has been isolated from the Sulfolobus solfataricus and has been identified as a homologue of bacterial repressor-like proteins. The Escherichia coli family member SohA or Prl1F appears to be bifunctional and is able to regulate its own expression as well as relieve the export block imposed by high-level synthesis of beta-galactosidase hybrid proteins [].; PDB: 2L66_A 2GLW_A 3TND_D 2W1T_B 2RO5_B 2FY9_A 2RO3_B 1UB4_C 3ZVK_G 1YFB_B ....
Probab=34.77 E-value=13 Score=23.69 Aligned_cols=33 Identities=21% Similarity=0.206 Sum_probs=24.3
Q ss_pred EecCCCCCCCCCCCCcccccccccCCeeeeCCEEEEEeCCC
Q 029432 33 KVGDLDGWGIPTSANPLVYAKWSKYHTFAIGDSLLFLYPPS 73 (193)
Q Consensus 33 ~VG~~~GW~~~~~~~~~~Y~~WA~~~~F~vGD~LvF~y~~~ 73 (193)
+||.+.+=++| .+|+....++.||.|.+.+..+
T Consensus 2 kvg~s~~v~iP--------k~~~~~l~l~~Gd~v~i~~~~~ 34 (47)
T PF04014_consen 2 KVGNSGQVTIP--------KEIREKLGLKPGDEVEIEVEGD 34 (47)
T ss_dssp EETTCSEEEE---------HHHHHHTTSSTTTEEEEEEETT
T ss_pred EECCCceEECC--------HHHHHHcCCCCCCEEEEEEeCC
Confidence 45665555555 4677777899999999999854
No 55
>PF05382 Amidase_5: Bacteriophage peptidoglycan hydrolase ; InterPro: IPR008044 This entry is represented by Bacteriophage SFi21, lysin (Cell wall hydrolase; 3.5.1.28 from EC). At least one of proteins in this entry, the Pal protein from the pneumococcal bacteriophage Dp-1 (O03979 from SWISSPROT) has been shown to be an N-acetylmuramoyl-L-alanine amidase []. According to the known modular structure of this and other peptidoglycan hydrolases from the pneumococcal system, the active site should reside within this domain while a C-terminal domain binds to the choline residues of the cell wall teichoic acids [, ].
Probab=32.87 E-value=1.3e+02 Score=24.14 Aligned_cols=35 Identities=11% Similarity=0.188 Sum_probs=27.8
Q ss_pred CeeeeCCEEEEEeC-----CCCCeEEEEcccCCCCCCCCC
Q 029432 58 HTFAIGDSLLFLYP-----PSQDSVIQVTAQSYDSCKLKD 92 (193)
Q Consensus 58 ~~F~vGD~LvF~y~-----~~~hsV~~V~~~~Y~~C~~s~ 92 (193)
...+.||.+++.-. ..-|+.+-+++...-.|+-..
T Consensus 74 ~~~q~GDI~I~g~~g~S~G~~GHtgif~~~~~iIhc~y~~ 113 (145)
T PF05382_consen 74 WNLQRGDIFIWGRRGNSAGAGGHTGIFMDNDTIIHCNYGA 113 (145)
T ss_pred ccccCCCEEEEcCCCCCCCCCCeEEEEeCCCcEEEecCCC
Confidence 46899999998665 245999999888888899743
No 56
>PRK09723 putative fimbrial-like adhesin protein; Provisional
Probab=30.70 E-value=4.7e+02 Score=24.78 Aligned_cols=13 Identities=31% Similarity=0.363 Sum_probs=9.8
Q ss_pred ceeeEEEecCCCC
Q 029432 27 SFCHQYKVGDLDG 39 (193)
Q Consensus 27 a~A~~~~VG~~~G 39 (193)
.....|.||+..|
T Consensus 25 ~~~~~~~vg~~~~ 37 (421)
T PRK09723 25 DDNVSYIVGNYYG 37 (421)
T ss_pred cCceEEEEccccc
Confidence 4578899998654
No 57
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=30.35 E-value=74 Score=26.22 Aligned_cols=30 Identities=23% Similarity=0.276 Sum_probs=22.5
Q ss_pred EEEecccccEEEEcCCCCcccC---CCeEEEEeeC
Q 029432 103 LFNITKEGNFYFTSGEPGHCQK---KQKLHITVGN 134 (193)
Q Consensus 103 ~v~L~~~G~~YFicg~~gHC~~---GmKl~I~V~~ 134 (193)
.+..+++|.||..|.. -|.. .|.+.|.|.+
T Consensus 116 ~~~~~~~G~y~gqCsE--lCG~gHs~M~~~V~vvs 148 (162)
T PTZ00047 116 NTFILREGVFYGQCSE--MCGTLHGFMPIVVEAVS 148 (162)
T ss_pred EEecCCCeEEEEEcch--hcCcCccCceEEEEEeC
Confidence 3456899999999974 5554 4888888764
No 58
>MTH00154 COX2 cytochrome c oxidase subunit II; Provisional
Probab=29.96 E-value=73 Score=27.19 Aligned_cols=30 Identities=23% Similarity=0.342 Sum_probs=23.5
Q ss_pred EEEecccccEEEEcCCCCcccCC---CeEEEEeeC
Q 029432 103 LFNITKEGNFYFTSGEPGHCQKK---QKLHITVGN 134 (193)
Q Consensus 103 ~v~L~~~G~~YFicg~~gHC~~G---mKl~I~V~~ 134 (193)
.++.+++|.||..|+. -|..| |++.|.|.+
T Consensus 183 ~~~~~~~G~y~g~Cse--~CG~~H~~M~~~v~vv~ 215 (227)
T MTH00154 183 NFLINRPGLFFGQCSE--ICGANHSFMPIVIESVS 215 (227)
T ss_pred EEEEcCceEEEEEeec--hhCcCccCCeEEEEEeC
Confidence 4667899999999974 56665 888888764
No 59
>MTH00168 COX2 cytochrome c oxidase subunit II; Provisional
Probab=29.17 E-value=77 Score=26.98 Aligned_cols=30 Identities=20% Similarity=0.365 Sum_probs=23.7
Q ss_pred EEEecccccEEEEcCCCCcccCC---CeEEEEeeC
Q 029432 103 LFNITKEGNFYFTSGEPGHCQKK---QKLHITVGN 134 (193)
Q Consensus 103 ~v~L~~~G~~YFicg~~gHC~~G---mKl~I~V~~ 134 (193)
.++.+++|.||..|.. -|..| |++.|.|.+
T Consensus 183 ~~~~~~~G~~~g~CsE--~CG~~Hs~M~~~v~vv~ 215 (225)
T MTH00168 183 AFLSSRPGSFYGQCSE--ICGANHSFMPIVVEFVP 215 (225)
T ss_pred EEEcCCCEEEEEEccc--ccCcCcCCCeEEEEEeC
Confidence 4567899999999974 66665 888888775
No 60
>COG3627 PhnJ Uncharacterized enzyme of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=29.10 E-value=35 Score=29.66 Aligned_cols=25 Identities=12% Similarity=0.440 Sum_probs=21.6
Q ss_pred eEEEecccccEEEEcCCCCcccCCC
Q 029432 102 SLFNITKEGNFYFTSGEPGHCQKKQ 126 (193)
Q Consensus 102 ~~v~L~~~G~~YFicg~~gHC~~Gm 126 (193)
+.|.++.-|-+-|+|+.-+||++-+
T Consensus 257 DEvi~DD~G~rmfvCSDTD~C~~r~ 281 (291)
T COG3627 257 DEVVLDDKGGRMFVCSDTDFCEQRR 281 (291)
T ss_pred eeeEEcCCCceEEEecCchHHHhHH
Confidence 4678888999999999999998754
No 61
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=28.95 E-value=72 Score=27.31 Aligned_cols=30 Identities=20% Similarity=0.343 Sum_probs=23.2
Q ss_pred EEEecccccEEEEcCCCCcccCC---CeEEEEeeC
Q 029432 103 LFNITKEGNFYFTSGEPGHCQKK---QKLHITVGN 134 (193)
Q Consensus 103 ~v~L~~~G~~YFicg~~gHC~~G---mKl~I~V~~ 134 (193)
.++.+++|.||..|+. -|..| |++.|.|.+
T Consensus 183 ~~~~~~~G~~~g~C~e--~CG~~H~~M~~~v~vv~ 215 (230)
T MTH00129 183 AFIASRPGVFYGQCSE--ICGANHSFMPIVVEAVP 215 (230)
T ss_pred EEEeCCceEEEEEChh--hccccccCCcEEEEEEC
Confidence 4567899999999985 56554 888888765
No 62
>PF09451 ATG27: Autophagy-related protein 27; InterPro: IPR018939 Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. There are more than 25 AuTophaGy-related (ATG) genes that are essential for autophagy, although it is still not known how the autophagosome is made. Atg9 is a potential membrane carrier to deliver lipids that are used to form the vesicle. Atg27 is another transmembrane protein, and is a cycling protein []. It acts as an effector of VPS34 phosphatidylinositol 3-phosphate kinase signalling and regulates the cytoplasm to vacuole transport (Cvt) vesicle formation. It is also required for autophagy-dependent cycling of ATG9.
Probab=28.91 E-value=53 Score=28.52 Aligned_cols=25 Identities=12% Similarity=0.263 Sum_probs=18.7
Q ss_pred ceeeEEEecCCCCCCCCCCCCccccccccc
Q 029432 27 SFCHQYKVGDLDGWGIPTSANPLVYAKWSK 56 (193)
Q Consensus 27 a~A~~~~VG~~~GW~~~~~~~~~~Y~~WA~ 56 (193)
-+-..|.+++..||.+-| +++-|.+
T Consensus 221 g~~~n~~~~g~~g~e~iP-----~~dfw~~ 245 (268)
T PF09451_consen 221 GSWYNYNRYGARGFELIP-----HFDFWRS 245 (268)
T ss_pred hhheeeccCCCCCceecc-----cHhHHHh
Confidence 345789999999998865 3566765
No 63
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=28.67 E-value=77 Score=27.08 Aligned_cols=30 Identities=17% Similarity=0.285 Sum_probs=23.2
Q ss_pred EEEecccccEEEEcCCCCcccCC---CeEEEEeeC
Q 029432 103 LFNITKEGNFYFTSGEPGHCQKK---QKLHITVGN 134 (193)
Q Consensus 103 ~v~L~~~G~~YFicg~~gHC~~G---mKl~I~V~~ 134 (193)
.++.+++|.||..|+. -|..| |.+.|.|.+
T Consensus 183 ~~~~~~~G~~~g~Cse--~CG~~H~~M~~~v~v~~ 215 (227)
T MTH00098 183 TLMSTRPGLYYGQCSE--ICGSNHSFMPIVLELVP 215 (227)
T ss_pred EEecCCcEEEEEECcc--ccCcCcCCceEEEEEeC
Confidence 4567899999999985 66665 888887764
No 64
>smart00495 ChtBD3 Chitin-binding domain type 3.
Probab=27.08 E-value=38 Score=20.67 Aligned_cols=18 Identities=17% Similarity=0.508 Sum_probs=13.3
Q ss_pred ccccccCCeeeeCCEEEE
Q 029432 51 YAKWSKYHTFAIGDSLLF 68 (193)
Q Consensus 51 Y~~WA~~~~F~vGD~LvF 68 (193)
|..|...+.-..||.+.+
T Consensus 1 ~~~W~~~~~Y~~Gd~V~~ 18 (41)
T smart00495 1 APAWQAGTVYTAGDVVSY 18 (41)
T ss_pred CCccCCCCcCcCCCEEEE
Confidence 456777777778888865
No 65
>MTH00139 COX2 cytochrome c oxidase subunit II; Provisional
Probab=27.01 E-value=85 Score=26.66 Aligned_cols=30 Identities=23% Similarity=0.353 Sum_probs=23.8
Q ss_pred EEEecccccEEEEcCCCCcccCC---CeEEEEeeC
Q 029432 103 LFNITKEGNFYFTSGEPGHCQKK---QKLHITVGN 134 (193)
Q Consensus 103 ~v~L~~~G~~YFicg~~gHC~~G---mKl~I~V~~ 134 (193)
.++.+++|.||..|+. -|..| |++.|.|.+
T Consensus 183 ~~~~~~~G~y~g~CsE--~CG~~Hs~M~~~v~vv~ 215 (226)
T MTH00139 183 GFFINRPGVFYGQCSE--ICGANHSFMPIVVEAIS 215 (226)
T ss_pred EEEcCCCEEEEEEChh--hcCcCcCCCeEEEEEeC
Confidence 4567899999999974 67765 888888765
No 66
>MTH00117 COX2 cytochrome c oxidase subunit II; Provisional
Probab=26.87 E-value=90 Score=26.61 Aligned_cols=30 Identities=23% Similarity=0.335 Sum_probs=23.6
Q ss_pred EEEecccccEEEEcCCCCcccCC---CeEEEEeeC
Q 029432 103 LFNITKEGNFYFTSGEPGHCQKK---QKLHITVGN 134 (193)
Q Consensus 103 ~v~L~~~G~~YFicg~~gHC~~G---mKl~I~V~~ 134 (193)
.++.+++|.||-.|+. -|..| |++.|.|.+
T Consensus 183 ~~~~~~~G~y~g~CsE--~CG~~Hs~M~~~v~vv~ 215 (227)
T MTH00117 183 SFITTRPGVFYGQCSE--ICGANHSFMPIVVESVP 215 (227)
T ss_pred EEEEcccceEEEEecc--ccccCccCCeEEEEEcC
Confidence 4567899999999985 66665 888888765
No 67
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=26.03 E-value=95 Score=26.53 Aligned_cols=31 Identities=10% Similarity=0.002 Sum_probs=24.4
Q ss_pred EEEecccccEEEEcCCCCcccCC---CeEEEEeeCC
Q 029432 103 LFNITKEGNFYFTSGEPGHCQKK---QKLHITVGNV 135 (193)
Q Consensus 103 ~v~L~~~G~~YFicg~~gHC~~G---mKl~I~V~~~ 135 (193)
.++.+++|.|+-.|.. .|..| |++.|.|.+.
T Consensus 182 ~~~~~~~G~y~g~CaE--~CG~~Ha~M~~~V~v~~~ 215 (226)
T TIGR01433 182 HLIANEPGVYDGISAN--YSGPGFSGMKFKAIATDR 215 (226)
T ss_pred EEEeCCCEEEEEEchh--hcCcCccCCeEEEEEECH
Confidence 4678899999999974 66665 8888888753
No 68
>PF11604 CusF_Ec: Copper binding periplasmic protein CusF; InterPro: IPR021647 CusF is a periplasmic protein involved in copper and silver resistance in Escherichia coil. CusF forms a five-stranded beta-barrel OB fold. Cu(I) binds to H36, M47 and M49 which are conserved residues in the protein []. ; PDB: 2L55_A 2VB3_X 1ZEQ_X 2QCP_X 3E6Z_X 2VB2_X.
Probab=25.54 E-value=44 Score=23.21 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=15.4
Q ss_pred cccccCCeeeeCCEEEEEeCCCCC
Q 029432 52 AKWSKYHTFAIGDSLLFLYPPSQD 75 (193)
Q Consensus 52 ~~WA~~~~F~vGD~LvF~y~~~~h 75 (193)
.+.+.-..+++||.|.|.+.....
T Consensus 35 ~~~~~l~~l~~Gd~V~F~~~~~~~ 58 (70)
T PF11604_consen 35 ADPVDLAGLKPGDKVRFTFERTDD 58 (70)
T ss_dssp -TTSEESS-STT-EEEEEEEEETT
T ss_pred CChhhhhcCCCCCEEEEEEEECCC
Confidence 344445689999999999985443
No 69
>KOG1546 consensus Metacaspase involved in regulation of apoptosis [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=25.31 E-value=43 Score=30.79 Aligned_cols=14 Identities=43% Similarity=0.653 Sum_probs=12.1
Q ss_pred eeeeCCEEEEEeCC
Q 029432 59 TFAIGDSLLFLYPP 72 (193)
Q Consensus 59 ~F~vGD~LvF~y~~ 72 (193)
..+.||.|+|+|+.
T Consensus 134 ~aq~gD~LvfHYSG 147 (362)
T KOG1546|consen 134 SAQPGDSLVFHYSG 147 (362)
T ss_pred cCCCCCEEEEEecC
Confidence 56899999999983
No 70
>MTH00038 COX2 cytochrome c oxidase subunit II; Provisional
Probab=24.98 E-value=1e+02 Score=26.31 Aligned_cols=30 Identities=27% Similarity=0.386 Sum_probs=23.5
Q ss_pred EEEecccccEEEEcCCCCcccCC---CeEEEEeeC
Q 029432 103 LFNITKEGNFYFTSGEPGHCQKK---QKLHITVGN 134 (193)
Q Consensus 103 ~v~L~~~G~~YFicg~~gHC~~G---mKl~I~V~~ 134 (193)
.++.+++|.||..|.. -|..| |++.|.|.+
T Consensus 183 ~~~~~~~G~~~g~Cse--~CG~~Hs~M~~~v~vv~ 215 (229)
T MTH00038 183 TFFISRTGLFYGQCSE--ICGANHSFMPIVIESVP 215 (229)
T ss_pred EEEcCCCEEEEEEccc--ccCcCcCCCeEEEEEeC
Confidence 4567899999999974 66665 888888764
No 71
>PF06462 Hyd_WA: Propeller; InterPro: IPR006624 Tectonins I and II are two dominant proteins in the nuclei and nuclear matrix from plasmodia of Physarum polycephalum (Slime mold) which encode 217 and 353 amino acids, respectively. Tectonin I is homologous to the C-terminal two-thirds of tectonin II. Both proteins contain six tandem repeats that are each 33-37 amino acids in length and define a new consensus sequence. Homologous repeats are found in L-6, a bacterial lipopolysaccharide-binding lectin from horseshoe crab hemocytes. The repetitive sequences of the tectonins and L-6 are reminiscent of the WD repeats of the beta-subunit of G proteins, suggesting that they form beta-propeller domains. The tectonins may be lectins that function as part of a transmembrane signalling complex during phagocytosis [].
Probab=24.52 E-value=1.5e+02 Score=17.49 Aligned_cols=25 Identities=20% Similarity=0.506 Sum_probs=20.8
Q ss_pred EEEecccccEEEEcCCCCcccCCCe
Q 029432 103 LFNITKEGNFYFTSGEPGHCQKKQK 127 (193)
Q Consensus 103 ~v~L~~~G~~YFicg~~gHC~~GmK 127 (193)
..-++..|.-||=.|+...|..|+.
T Consensus 3 VWav~~~G~v~~R~Gis~~~P~G~~ 27 (32)
T PF06462_consen 3 VWAVTSDGSVYFRTGISPSNPEGTS 27 (32)
T ss_pred EEEEcCCCCEEEECcCCCCCCCCCC
Confidence 4567788999999999999999874
No 72
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=24.00 E-value=59 Score=24.39 Aligned_cols=78 Identities=14% Similarity=0.170 Sum_probs=48.6
Q ss_pred CCeeeeCCEEEEEeCC---CCCeE---------EEEcccCC----------CCCCCCCCceeccCCce--EEEecccccE
Q 029432 57 YHTFAIGDSLLFLYPP---SQDSV---------IQVTAQSY----------DSCKLKDPILYMNNGNS--LFNITKEGNF 112 (193)
Q Consensus 57 ~~~F~vGD~LvF~y~~---~~hsV---------~~V~~~~Y----------~~C~~s~pi~~~~~G~~--~v~L~~~G~~ 112 (193)
....+.||.+++.... ..|.. +..+...+ +..-.++.+.....|.. .+..+.+|.+
T Consensus 35 ~~~~~~g~~v~~~l~N~~~~~Hp~HlHG~~F~vl~~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~~~~~~~G~w 114 (138)
T PF07731_consen 35 VIEVKNGDVVEIVLQNNGSMPHPFHLHGHSFQVLGRGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIRFRADNPGPW 114 (138)
T ss_dssp EEEEETTSEEEEEEEECTTSSEEEEETTSEEEEEEETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEEEEETSTEEE
T ss_pred eEEEeCCCEEEEEEECCCCCccceEEEeeEEEeeecCCcccccccccccccccCcccccccccceeEEEEEEEeecceEE
Confidence 3478899998877753 23322 22222222 12222333333444444 4567889999
Q ss_pred EEEcCCCCcccCCCeEEEEeeC
Q 029432 113 YFTSGEPGHCQKKQKLHITVGN 134 (193)
Q Consensus 113 YFicg~~gHC~~GmKl~I~V~~ 134 (193)
.|=|-...|=..||...+.|..
T Consensus 115 ~~HCHi~~H~~~GM~~~~~v~~ 136 (138)
T PF07731_consen 115 LFHCHILEHEDNGMMAVFVVGP 136 (138)
T ss_dssp EEEESSHHHHHTT-EEEEEECH
T ss_pred EEEEchHHHHhCCCeEEEEEcC
Confidence 9999999999999999999864
No 73
>MTH00023 COX2 cytochrome c oxidase subunit II; Validated
Probab=23.55 E-value=1.1e+02 Score=26.41 Aligned_cols=31 Identities=26% Similarity=0.380 Sum_probs=24.2
Q ss_pred EEEecccccEEEEcCCCCcccCC---CeEEEEeeCC
Q 029432 103 LFNITKEGNFYFTSGEPGHCQKK---QKLHITVGNV 135 (193)
Q Consensus 103 ~v~L~~~G~~YFicg~~gHC~~G---mKl~I~V~~~ 135 (193)
.++.+++|.||..|.. .|..| |++.|.|.+.
T Consensus 194 ~~~~~~~G~y~g~C~e--~CG~~Hs~M~~~v~vv~~ 227 (240)
T MTH00023 194 GFFIKRPGVFYGQCSE--ICGANHSFMPIVIEAVSL 227 (240)
T ss_pred EEEcCCCEEEEEEchh--hcCcCccCCeEEEEEECH
Confidence 4567899999999974 67766 8888887753
No 74
>KOG3416 consensus Predicted nucleic acid binding protein [General function prediction only]
Probab=23.27 E-value=80 Score=25.22 Aligned_cols=38 Identities=21% Similarity=0.321 Sum_probs=22.2
Q ss_pred EEEecCCCCCCCCCCCCcccccccc-cCCeeeeCCEEEEEeCCCCCeEE
Q 029432 31 QYKVGDLDGWGIPTSANPLVYAKWS-KYHTFAIGDSLLFLYPPSQDSVI 78 (193)
Q Consensus 31 ~~~VG~~~GW~~~~~~~~~~Y~~WA-~~~~F~vGD~LvF~y~~~~hsV~ 78 (193)
..+|||+.| . .+..-|- ....|+.||.|.|. .+.-++.
T Consensus 40 ~~kVaD~Tg-s-------I~isvW~e~~~~~~PGDIirLt--~Gy~Si~ 78 (134)
T KOG3416|consen 40 SCKVADETG-S-------INISVWDEEGCLIQPGDIIRLT--GGYASIF 78 (134)
T ss_pred EEEEecccc-e-------EEEEEecCcCcccCCccEEEec--ccchhhh
Confidence 457888776 1 1233443 24589999998654 3444443
No 75
>PF11008 DUF2846: Protein of unknown function (DUF2846); InterPro: IPR022548 Some members in this group of proteins with unknown function are annotated as lipoproteins. However this cannot be confirmed.
Probab=23.24 E-value=2.6e+02 Score=20.85 Aligned_cols=28 Identities=7% Similarity=-0.067 Sum_probs=16.1
Q ss_pred cCCeeeeCCEEEEEeCCCCCeEEEEccc
Q 029432 56 KYHTFAIGDSLLFLYPPSQDSVIQVTAQ 83 (193)
Q Consensus 56 ~~~~F~vGD~LvF~y~~~~hsV~~V~~~ 83 (193)
.+..+++.|.++.+-.++..-+.+|...
T Consensus 41 ~~~~v~vdg~~ig~l~~g~y~~~~v~pG 68 (117)
T PF11008_consen 41 VKPDVYVDGELIGELKNGGYFYVEVPPG 68 (117)
T ss_pred ccceEEECCEEEEEeCCCeEEEEEECCC
Confidence 3446677777766655555555555433
No 76
>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....
Probab=21.97 E-value=92 Score=22.29 Aligned_cols=43 Identities=21% Similarity=0.410 Sum_probs=31.2
Q ss_pred eeEEEecCCC---CCCCCCCC--C----cccccccccCCeeeeCCEEEEEeC
Q 029432 29 CHQYKVGDLD---GWGIPTSA--N----PLVYAKWSKYHTFAIGDSLLFLYP 71 (193)
Q Consensus 29 A~~~~VG~~~---GW~~~~~~--~----~~~Y~~WA~~~~F~vGD~LvF~y~ 71 (193)
-..|+||+.. .|+..-.. . ...|..|.....+..|..+.|||-
T Consensus 16 e~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~~~~~eYKy~ 67 (96)
T PF00686_consen 16 ESVYIVGSCPELGNWDPKKAVPLQWNEGTENYPIWSATVDLPAGTPFEYKYV 67 (96)
T ss_dssp EEEEEEESSGGGTTTSGGGSBESEBESSSSTTTSEEEEEEEETTSEEEEEEE
T ss_pred CEEEEEECcHHhCCCChHhccccccccCCCCCCeEEEEEECcCCCEEEEEEE
Confidence 4678999854 49852110 0 125799999999999999999995
No 77
>COG5569 Uncharacterized conserved protein [Function unknown]
Probab=21.88 E-value=69 Score=24.56 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=18.1
Q ss_pred ccCCeeeeCCEEEEEeCC--CCCeEEEE
Q 029432 55 SKYHTFAIGDSLLFLYPP--SQDSVIQV 80 (193)
Q Consensus 55 A~~~~F~vGD~LvF~y~~--~~hsV~~V 80 (193)
|+=..|+-||.+.|.|+. |+-.|.||
T Consensus 79 a~lsglKeGdkV~fvferv~gk~tv~qv 106 (108)
T COG5569 79 AKLSGLKEGDKVEFVFERVNGKLTVQQV 106 (108)
T ss_pred HHhhccccCCcEEEEEEeeCCEEEEEEe
Confidence 334467889999999974 45555554
No 78
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=21.88 E-value=1.2e+02 Score=25.41 Aligned_cols=31 Identities=6% Similarity=0.116 Sum_probs=25.3
Q ss_pred EEEecccccEEEEcCCCCcccCC---CeEEEEeeCC
Q 029432 103 LFNITKEGNFYFTSGEPGHCQKK---QKLHITVGNV 135 (193)
Q Consensus 103 ~v~L~~~G~~YFicg~~gHC~~G---mKl~I~V~~~ 135 (193)
.++.+++|.||-.|.. .|..| |++.|.|.+.
T Consensus 173 ~~~~~~~G~y~g~Cae--~CG~~Hs~M~~~v~v~~~ 206 (217)
T TIGR01432 173 YLQADQVGTYRGRNAN--FNGEGFADQTFDVNAVSE 206 (217)
T ss_pred EEEeCCCEEEEEEehh--hcCccccCCeEEEEEeCH
Confidence 5677899999999984 67776 8999988753
No 79
>cd05810 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrolase (alpha-MTH), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Alpha-MTH, also known as maltotetraose-forming exo-amylase or G4-amylase, is an exo-amylase found in bacteria that degrades starch from its non-reducing end. Most alpha-MTHs have, in addition to the C-terminal CBM20 domain, an N-terminal glycosyl hydrolase family 13 catalytic domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=21.51 E-value=98 Score=22.60 Aligned_cols=42 Identities=19% Similarity=0.480 Sum_probs=29.6
Q ss_pred eEEEecCCC---CCCCCCC--CCcccccccccCCeeeeCCEEEEEeC
Q 029432 30 HQYKVGDLD---GWGIPTS--ANPLVYAKWSKYHTFAIGDSLLFLYP 71 (193)
Q Consensus 30 ~~~~VG~~~---GW~~~~~--~~~~~Y~~WA~~~~F~vGD~LvF~y~ 71 (193)
..|++|+.. .|+.... .....|..|.....+..|..+.|||-
T Consensus 17 ~l~v~Gs~~~LG~W~~~~a~~l~~~~~~~W~~~v~lp~~~~veyKyv 63 (97)
T cd05810 17 SVYVVGNVPQLGNWSPADAVKLDPTAYPTWSGSISLPASTNVEWKCL 63 (97)
T ss_pred eEEEEEChHHhCCCChhhcccccCCCCCeEEEEEEcCCCCeEEEEEE
Confidence 458899743 5874211 11245788999899999999999994
No 80
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=21.51 E-value=1.3e+02 Score=25.75 Aligned_cols=30 Identities=27% Similarity=0.440 Sum_probs=23.3
Q ss_pred EEEecccccEEEEcCCCCcccCC---CeEEEEeeC
Q 029432 103 LFNITKEGNFYFTSGEPGHCQKK---QKLHITVGN 134 (193)
Q Consensus 103 ~v~L~~~G~~YFicg~~gHC~~G---mKl~I~V~~ 134 (193)
.++.+++|.||..|+. -|..| |.+.|.|.+
T Consensus 183 ~~~~~~~G~~~g~Cse--~CG~~Hs~M~~~v~vv~ 215 (228)
T MTH00008 183 GFTITRPGVFYGQCSE--ICGANHSFMPIVLEAVD 215 (228)
T ss_pred EEEeCCCEEEEEEChh--hcCcCccCceeEEEEEC
Confidence 4567899999999985 66654 888888765
No 81
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=21.47 E-value=72 Score=21.77 Aligned_cols=23 Identities=22% Similarity=0.189 Sum_probs=19.5
Q ss_pred ccccccccCCeeeeCCEEEEEeC
Q 029432 49 LVYAKWSKYHTFAIGDSLLFLYP 71 (193)
Q Consensus 49 ~~Y~~WA~~~~F~vGD~LvF~y~ 71 (193)
....+|+...+.++||.|.|...
T Consensus 26 ~~~~k~~~~~~~~~Gd~v~ytit 48 (76)
T PF01345_consen 26 LSITKTVNPSTANPGDTVTYTIT 48 (76)
T ss_pred EEEEEecCCCcccCCCEEEEEEE
Confidence 34678999999999999998875
No 82
>cd05829 Sortase_E Sortase E (SrtE) is a membrane transpeptidase found in gram-positive bacteria that cleaves surface proteins at a cell sorting motif and catalyzes a transpeptidation reaction in which the surface protein substrate is covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. The function of Sortase E is unknown. In two different sortase families, the N-terminus either functions as both a signal peptide for secretion and a stop-transfer signal for membrane anchoring, or it contains a signal peptide only and the C-terminus serves as a membrane anchor. Most gram-positive bacteria contain more than one sortase and it is thought that the different sortases anchor different surface protein classes. The sortase domain is a modified beta-barrel flanked by two (SrtA) or three (SrtB) short alpha-helices.
Probab=21.15 E-value=1.7e+02 Score=22.86 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=16.7
Q ss_pred CeeeeCCEEEEEeCCCCCeEEEE
Q 029432 58 HTFAIGDSLLFLYPPSQDSVIQV 80 (193)
Q Consensus 58 ~~F~vGD~LvF~y~~~~hsV~~V 80 (193)
...+.||.|..+...++--.++|
T Consensus 71 ~~l~~GD~I~v~~~~g~~~~Y~V 93 (144)
T cd05829 71 GDLRKGDKVEVTRADGQTATFRV 93 (144)
T ss_pred hcCCCCCEEEEEECCCCEEEEEE
Confidence 36789999999996555444555
No 83
>PF12791 RsgI_N: Anti-sigma factor N-terminus; InterPro: IPR024449 The heat shock genes in Bacillus subtilis can be classified into several groups according to their regulation [], and the sigma gene, sigI, of Bacillus subtilis belongs to the group IV heat-shock response genes and has many orthologues in the bacterial phylum Firmicutes []. Regulation of sigma factor I is carried out by RsgI from the same operon. This entry represents the N-terminal cytoplasmic portion of RsgI ('upstream' of the single transmembrane helix) which has been shown to interact directly with Sigma-I [].
Probab=20.89 E-value=2.5e+02 Score=18.13 Aligned_cols=36 Identities=17% Similarity=0.338 Sum_probs=27.4
Q ss_pred CCceEEEecccccEEEEcCCCCcccCCCeEEEEeeCC
Q 029432 99 NGNSLFNITKEGNFYFTSGEPGHCQKKQKLHITVGNV 135 (193)
Q Consensus 99 ~G~~~v~L~~~G~~YFicg~~gHC~~GmKl~I~V~~~ 135 (193)
.++..+-||..|.+.=|=-.++ |+-||++.+.....
T Consensus 4 ~~~~aiVlT~dGeF~~ik~~~~-~~vG~eI~~~~~~~ 39 (56)
T PF12791_consen 4 KKKYAIVLTPDGEFIKIKRKPG-MEVGQEIEFDEKDI 39 (56)
T ss_pred cCCEEEEEcCCCcEEEEeCCCC-CcccCEEEEechhh
Confidence 3566778888888777766566 99999999887543
No 84
>cd05813 CBM20_genethonin_1 Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Genethonin-1 is a human skeletal muscle protein with no known function. It contains a C-terminal CBM20 domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=20.29 E-value=1.2e+02 Score=21.60 Aligned_cols=41 Identities=12% Similarity=0.212 Sum_probs=28.9
Q ss_pred EEEecCC---CCCCCCCCCCcccccccccCCeeeeCCEEEEEeC
Q 029432 31 QYKVGDL---DGWGIPTSANPLVYAKWSKYHTFAIGDSLLFLYP 71 (193)
Q Consensus 31 ~~~VG~~---~GW~~~~~~~~~~Y~~WA~~~~F~vGD~LvF~y~ 71 (193)
.|++|+. ..|+..-.-...++..|.....+..++.+.|+|-
T Consensus 18 l~v~G~~~~LG~W~~~~~l~~~~~~~W~~~v~lp~~~~ieYky~ 61 (95)
T cd05813 18 VAVTGDHEELGSWHSYIPLQYVKDGFWSASVSLPVDTHVEWKFV 61 (95)
T ss_pred EEEEcChHHHCCCCccccCcCCCCCCEEEEEEecCCCcEEEEEE
Confidence 4688874 3588422212345778988889999999999995
No 85
>MTH00051 COX2 cytochrome c oxidase subunit II; Provisional
Probab=20.22 E-value=1.3e+02 Score=25.81 Aligned_cols=30 Identities=27% Similarity=0.360 Sum_probs=23.7
Q ss_pred EEEecccccEEEEcCCCCcccCC---CeEEEEeeC
Q 029432 103 LFNITKEGNFYFTSGEPGHCQKK---QKLHITVGN 134 (193)
Q Consensus 103 ~v~L~~~G~~YFicg~~gHC~~G---mKl~I~V~~ 134 (193)
.++.+++|.||..|.. -|..| |++.|.|.+
T Consensus 187 ~~~~~~~G~y~g~Cse--~CG~~Hs~M~i~v~vv~ 219 (234)
T MTH00051 187 SFFIKRPGVFYGQCSE--ICGANHSFMPIVIEGVS 219 (234)
T ss_pred EEEeCCCEEEEEEChh--hcCcccccCeeEEEEEC
Confidence 4667899999999985 66665 888888765
No 86
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=20.02 E-value=7.3e+02 Score=24.41 Aligned_cols=78 Identities=10% Similarity=0.060 Sum_probs=48.2
Q ss_pred eeeeCCEEEEEeCCC---CC-------eEEEE--cccCCCC-----CCCCCCc-----eeccCCce--EEEecccccEEE
Q 029432 59 TFAIGDSLLFLYPPS---QD-------SVIQV--TAQSYDS-----CKLKDPI-----LYMNNGNS--LFNITKEGNFYF 114 (193)
Q Consensus 59 ~F~vGD~LvF~y~~~---~h-------sV~~V--~~~~Y~~-----C~~s~pi-----~~~~~G~~--~v~L~~~G~~YF 114 (193)
++.-++++.+-+... .| +...| ....|+. =|..||. .....|-. +|..|.||..+|
T Consensus 436 ~~~~n~~VeiV~qn~~~~~HP~HLHGh~F~Vvg~G~G~~~~~~~~~~Nl~nPp~RdTv~vp~~gW~aIRF~aDNPG~W~l 515 (596)
T PLN00044 436 NGTYKGFMEIIFQNNATNVQSYHLDGYAFFVVGMDYGLWTDNSRGTYNKWDGVARSTIQVFPGAWTAILVFLDNAGIWNL 515 (596)
T ss_pred EcCCCCEEEEEEeCCCCCCCCeeEcCccEEEEeecCCCCCCCcccccccCCCCccceEEeCCCCeEEEEEecCCCEEehh
Confidence 344466666655432 34 55555 3344542 2333443 23345554 566788999888
Q ss_pred EcCCCCcccCCCeEEEEeeCCC
Q 029432 115 TSGEPGHCQKKQKLHITVGNVS 136 (193)
Q Consensus 115 icg~~gHC~~GmKl~I~V~~~~ 136 (193)
=|-...|=-.||.+.+.|....
T Consensus 516 HCH~~~h~~~Gm~~~~~v~~~~ 537 (596)
T PLN00044 516 RVENLDAWYLGQEVYINVVNPE 537 (596)
T ss_pred hccCchhhcccCcEEEEEecCC
Confidence 8887788778999999988665
Done!