Query 029432
Match_columns 193
No_of_seqs 201 out of 843
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 21:06:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029432.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029432hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jer_A Cucumber stellacyanin; 100.0 1.4E-44 4.6E-49 286.1 6.5 109 28-138 2-112 (138)
2 1ws8_A Mavicyanin; oxidized fo 100.0 5.8E-42 2E-46 261.2 7.3 106 28-136 1-106 (109)
3 1x9u_A Umecyanin; cupredoxin, 100.0 2E-41 7E-46 260.8 7.6 106 30-137 2-108 (116)
4 2cbp_A Cucumber basic protein; 100.0 1.4E-39 4.7E-44 242.8 7.4 96 30-133 1-96 (96)
5 1f56_A Plantacyanin; cupredoxi 100.0 1.6E-35 5.6E-40 218.9 8.3 91 30-133 1-91 (91)
6 1qhq_A Protein (auracyanin); e 99.3 5E-12 1.7E-16 97.6 8.4 96 27-133 14-139 (140)
7 1bxv_A Plastocyanin; copper pr 99.2 2.4E-11 8.2E-16 86.3 7.4 85 31-133 4-91 (91)
8 2cal_A Rusticyanin; iron respi 99.2 4.5E-11 1.5E-15 94.9 7.0 76 57-133 62-154 (154)
9 1iuz_A Plastocyanin; electron 99.0 1.2E-09 4.2E-14 79.2 7.3 91 30-133 2-98 (98)
10 2aan_A Auracyanin A; cupredoxi 98.9 8E-09 2.7E-13 79.5 10.8 94 28-133 17-139 (139)
11 1pmy_A Pseudoazurin; electron 98.9 2.6E-09 8.9E-14 81.9 7.9 82 35-134 11-94 (123)
12 1plc_A Plastocyanin; electron 98.9 5.3E-09 1.8E-13 75.6 8.6 89 31-133 2-99 (99)
13 1paz_A Pseudoazurin precursor; 98.9 3.6E-09 1.2E-13 81.0 8.0 82 35-134 11-94 (123)
14 2gim_A Plastocyanin; beta shee 98.9 1E-08 3.4E-13 74.8 9.8 89 31-133 5-105 (106)
15 2plt_A Plastocyanin; electron 98.9 4.1E-09 1.4E-13 75.9 6.9 91 30-133 2-98 (98)
16 1kdj_A Plastocyanin; electron 98.8 9.5E-09 3.2E-13 74.5 8.1 89 31-133 2-102 (102)
17 1byp_A Protein (plastocyanin); 98.8 1.7E-08 5.8E-13 72.8 8.3 90 31-133 2-99 (99)
18 3erx_A Pseudoazurin; copper pr 98.8 7.1E-09 2.4E-13 79.6 6.6 71 57-134 22-94 (123)
19 3tu6_A Pseudoazurin (blue copp 98.8 1.1E-08 3.8E-13 79.0 7.4 84 34-135 11-97 (127)
20 1b3i_A PETE protein, protein ( 98.8 1.6E-08 5.6E-13 72.6 7.6 89 31-133 4-97 (97)
21 3ef4_A Pseudoazurin, blue copp 98.8 2.1E-08 7.3E-13 77.2 8.1 83 34-134 10-95 (124)
22 1pcs_A Plastocyanin; electron 98.6 1.2E-07 4.2E-12 68.1 8.0 90 31-133 4-98 (98)
23 3c75_A Amicyanin; copper prote 98.4 5.7E-07 2E-11 69.1 6.1 70 57-133 61-132 (132)
24 3cvb_A Plastocyanin; cupredoxi 98.2 7.6E-06 2.6E-10 58.9 8.0 88 31-133 4-104 (105)
25 4hci_A Cupredoxin 1; structura 98.1 2.6E-06 9E-11 61.7 5.3 66 57-133 29-100 (100)
26 3ay2_A Lipid modified azurin p 98.1 8.9E-06 3E-10 65.6 8.5 92 30-133 43-166 (167)
27 2ux6_A Pseudoazurin; type-1 co 98.1 4.8E-06 1.6E-10 63.4 6.5 69 57-134 22-92 (122)
28 1cuo_A Protein (azurin ISO-2); 98.0 3.5E-05 1.2E-09 59.3 10.0 91 31-133 4-128 (129)
29 2ov0_A Amicyanin; beta-sandwic 98.0 1.9E-05 6.5E-10 57.8 6.8 83 28-133 17-105 (105)
30 1id2_A Amicyanin; beta barrel, 97.8 3.9E-05 1.3E-09 56.3 6.8 66 57-133 35-106 (106)
31 2iaa_C Azurin; quinoprotein, t 97.8 0.00011 3.8E-09 56.4 9.0 90 32-133 4-127 (128)
32 1nwp_A Azurin; electron transp 97.8 0.0001 3.5E-09 56.6 8.5 91 31-133 4-128 (128)
33 1iko_P Ephrin-B2; greek KEY, g 97.7 1.5E-05 5.1E-10 65.0 3.0 80 59-138 25-144 (178)
34 2ccw_A Azurin II, AZN-2; elect 97.7 0.00013 4.4E-09 56.1 8.2 91 31-133 4-128 (129)
35 3czu_B Ephrin-A1; ATP-binding, 97.6 0.00013 4.6E-09 59.6 7.2 101 27-138 27-164 (182)
36 2x11_B Ephrin-A5; receptor-sig 97.5 0.0002 6.9E-09 58.3 7.3 77 58-137 52-165 (177)
37 3d12_B Ephrin-B3; beta propell 97.3 0.00032 1.1E-08 55.1 5.4 76 58-133 22-140 (141)
38 1iby_A Nitrosocyanin; RED copp 97.0 0.00098 3.4E-08 48.7 5.2 66 57-133 39-111 (112)
39 2vsm_B Ephrin-B2; developmenta 96.9 0.00068 2.3E-08 53.2 3.9 76 59-134 24-139 (140)
40 1shx_A Ephrin-A5; ephrin signa 96.9 0.0023 7.9E-08 50.1 6.7 76 58-136 23-135 (138)
41 2cua_A Protein (CUA); CUA cent 95.9 0.02 6.9E-07 43.9 6.9 66 57-133 61-134 (135)
42 2wo3_B Ephrin-A2; transferase- 95.8 0.017 5.8E-07 46.0 6.3 76 58-136 32-145 (157)
43 3fsa_A Azurin; copper, cupredo 95.0 0.23 7.8E-06 38.0 9.9 87 32-133 5-125 (125)
44 2dv6_A Nitrite reductase; elec 94.5 0.064 2.2E-06 47.7 6.4 74 56-136 55-134 (447)
45 1fwx_A Nitrous oxide reductase 93.3 0.18 6.3E-06 47.6 7.4 68 57-135 514-593 (595)
46 3hei_B Ephrin-A1; EPH receptor 93.2 0.083 2.8E-06 40.9 4.1 76 58-133 22-131 (132)
47 3s8f_B Cytochrome C oxidase su 91.9 0.77 2.6E-05 36.5 8.3 68 56-133 93-167 (168)
48 3sbq_A Nitrous-oxide reductase 91.2 0.41 1.4E-05 45.5 7.0 67 57-134 559-637 (638)
49 1mzy_A Copper-containing nitri 84.6 1.3 4.3E-05 37.8 5.3 76 57-135 65-153 (333)
50 1oe1_A Dissimilatory copper-co 83.8 1.5 5E-05 37.4 5.3 76 58-136 67-154 (336)
51 1kbv_A ANIA, major outer membr 78.6 2.1 7.2E-05 36.6 4.5 76 57-135 71-157 (327)
52 2zoo_A Probable nitrite reduct 75.5 1.9 6.7E-05 38.0 3.5 76 57-135 61-147 (442)
53 1oe1_A Dissimilatory copper-co 74.5 3.2 0.00011 35.3 4.5 35 103-137 286-321 (336)
54 2bw4_A Copper-containing nitri 73.6 4.2 0.00015 34.5 5.1 76 58-136 73-160 (340)
55 3gdc_A Multicopper oxidase; be 66.2 11 0.00039 31.3 6.0 79 57-136 67-156 (288)
56 3l6w_A Hemocyanin 1; cupredoxi 61.6 7.5 0.00026 35.9 4.3 75 57-133 412-491 (491)
57 3cg8_A Laccase; oxidoreductase 59.9 16 0.00054 31.4 5.9 32 107-138 279-310 (343)
58 1mzy_A Copper-containing nitri 57.3 7 0.00024 33.1 3.2 33 103-135 286-319 (333)
59 1yel_A AT1G16640; CESG, protei 56.2 5 0.00017 28.6 1.8 19 55-73 73-91 (104)
60 2zwn_A Two-domain type laccase 51.8 15 0.0005 31.4 4.3 76 57-135 36-127 (339)
61 3gdc_A Multicopper oxidase; be 51.7 6.6 0.00023 32.8 2.1 32 103-134 257-288 (288)
62 3kw8_A Laccase, putative coppe 50.1 12 0.0004 31.0 3.4 30 108-137 239-268 (276)
63 4i1k_A B3 domain-containing tr 50.1 7.5 0.00026 29.8 2.0 28 53-80 110-137 (146)
64 1sdd_A Coagulation factor V; c 49.5 2.7 9.3E-05 35.5 -0.7 33 103-135 269-301 (306)
65 3hb3_B Cytochrome C oxidase su 43.8 20 0.00068 30.8 3.9 31 103-135 232-265 (298)
66 2q9o_A Laccase-1; multicopper 43.7 25 0.00086 32.2 4.8 76 57-135 68-158 (559)
67 3g5w_A Multicopper oxidase typ 42.8 31 0.001 29.2 4.9 34 103-136 239-278 (318)
68 1zpu_A Iron transport multicop 42.6 32 0.0011 31.3 5.4 77 57-136 35-126 (534)
69 3g5w_A Multicopper oxidase typ 42.1 24 0.00081 29.9 4.1 76 57-135 35-126 (318)
70 1cyx_A CYOA; electron transpor 42.1 22 0.00074 29.1 3.7 29 103-133 84-115 (205)
71 1kbv_A ANIA, major outer membr 40.9 22 0.00074 30.1 3.7 33 103-135 275-308 (327)
72 2gsm_B Cytochrome C oxidase su 40.9 24 0.00082 29.6 3.9 30 103-134 214-246 (262)
73 3sqr_A Laccase; multicopper ox 39.7 41 0.0014 31.2 5.6 33 103-135 156-188 (580)
74 3iuw_A Activating signal coint 39.7 12 0.00041 26.5 1.5 16 58-73 36-52 (83)
75 1aoz_A Ascorbate oxidase; oxid 39.4 38 0.0013 30.8 5.3 77 57-136 35-125 (552)
76 1v54_B Cytochrome C oxidase po 39.0 22 0.00075 29.2 3.3 30 103-134 183-215 (227)
77 2bw4_A Copper-containing nitri 37.2 32 0.0011 29.0 4.2 35 103-137 292-327 (340)
78 3t6v_A Laccase; beta barrel, o 37.1 39 0.0013 30.6 4.9 34 103-136 97-131 (495)
79 3pxl_A Laccase; 4-copper prote 35.5 42 0.0014 30.4 4.9 34 103-136 96-130 (499)
80 3tas_A Small laccase, multi-co 34.4 56 0.0019 27.4 5.2 31 108-138 245-275 (313)
81 2hzs_I RNA polymerase II media 33.5 0.58 2E-05 26.0 -4.8 19 57-75 4-22 (27)
82 2l8d_A Lamin-B receptor; DNA b 33.4 53 0.0018 22.2 3.9 46 57-107 7-54 (66)
83 2z0t_A Putative uncharacterize 32.6 15 0.00052 27.1 1.2 11 58-68 32-42 (109)
84 4he6_A Peptidase family U32; u 32.2 34 0.0012 23.5 2.9 19 56-74 26-44 (89)
85 2zoo_A Probable nitrite reduct 32.0 36 0.0012 29.8 3.7 35 103-137 265-300 (442)
86 2dig_A Lamin-B receptor; tudor 29.4 69 0.0024 21.7 3.9 46 57-107 10-57 (68)
87 2k75_A Uncharacterized protein 28.0 26 0.00088 25.1 1.7 29 31-69 41-69 (106)
88 1sdd_B Coagulation factor V; c 27.9 34 0.0012 31.6 3.0 32 103-134 296-327 (647)
89 2uxt_A Protein SUFI, SUFI; oxi 27.9 31 0.0011 30.6 2.6 70 58-135 52-139 (451)
90 1fft_B Ubiquinol oxidase; elec 27.6 31 0.0011 29.8 2.5 67 57-135 152-228 (315)
91 2qcp_X Cation efflux system pr 27.4 25 0.00085 24.2 1.5 16 57-72 51-66 (80)
92 2vb2_X Copper protein, cation 27.2 25 0.00085 24.6 1.5 20 53-72 55-74 (88)
93 2r7e_B Coagulation factor VIII 24.7 12 0.00042 36.0 -0.7 73 57-133 369-455 (770)
94 3kw8_A Laccase, putative coppe 24.7 1.1E+02 0.0038 25.0 5.3 28 109-136 109-142 (276)
95 1v10_A Laccase; multicopper bl 24.1 71 0.0024 28.8 4.3 34 103-136 117-151 (521)
96 3t9w_A Small laccase, multi-co 24.0 40 0.0014 28.2 2.5 31 107-137 260-290 (299)
97 2l55_A SILB,silver efflux prot 23.4 31 0.0011 23.9 1.3 21 53-73 41-61 (82)
98 2j5w_A Ceruloplasmin, ferroxid 22.7 61 0.0021 32.2 3.8 76 57-137 272-359 (1065)
99 1xne_A Hypothetical protein PF 22.3 29 0.00098 25.7 1.1 12 58-69 33-44 (113)
100 1sdd_A Coagulation factor V; c 22.0 1.2E+02 0.0042 25.0 5.2 26 110-135 140-167 (306)
101 2r7e_B Coagulation factor VIII 21.6 60 0.0021 31.2 3.4 29 108-136 269-299 (770)
102 2dv6_A Nitrite reductase; elec 21.0 83 0.0028 27.3 4.0 33 103-135 402-434 (447)
103 2z0b_A GDE5, KIAA1434, putativ 20.3 40 0.0014 25.0 1.5 43 29-71 23-74 (131)
No 1
>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1
Probab=100.00 E-value=1.4e-44 Score=286.13 Aligned_cols=109 Identities=32% Similarity=0.585 Sum_probs=101.6
Q ss_pred eeeEEEecCCCCCCCCCCCCcccccccccCCeeeeCCEEEEEeCCCCCeEEEE-cccCCCCCCCCCCceeccCCceEEEe
Q 029432 28 FCHQYKVGDLDGWGIPTSANPLVYAKWSKYHTFAIGDSLLFLYPPSQDSVIQV-TAQSYDSCKLKDPILYMNNGNSLFNI 106 (193)
Q Consensus 28 ~A~~~~VG~~~GW~~~~~~~~~~Y~~WA~~~~F~vGD~LvF~y~~~~hsV~~V-~~~~Y~~C~~s~pi~~~~~G~~~v~L 106 (193)
+|++|+|||+.||+++++ ..+|++||++++|+|||+|+|+|.+++|+|+|| +|++|+.|+.++++..+++|+++|+|
T Consensus 2 ~a~~~~VGg~~GW~~~~~--~~~Y~~Wa~~~~F~vGD~LvF~y~~~~HsV~~V~~~~~y~~C~~s~p~~~~~~G~~~v~L 79 (138)
T 1jer_A 2 QSTVHIVGDNTGWSVPSS--PNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACNFVNSDNDVERTSPVIER 79 (138)
T ss_dssp CCCEEETTGGGCSSCCSS--TTHHHHHHHTCCEETTCEEEECCCTTTCCCEEESCHHHHHHTCCTTSCCCCCCCSCEEEE
T ss_pred CceEEEECCcCcCcCCCC--ccchhhhhcCCcCcCCCEEEEeecCCCceEEEeCchhhcCccCCCCccccccCCCeEEEe
Confidence 578999999999999853 357999999999999999999999999999999 99999999999999999999999999
Q ss_pred -cccccEEEEcCCCCcccCCCeEEEEeeCCCCC
Q 029432 107 -TKEGNFYFTSGEPGHCQKKQKLHITVGNVSAE 138 (193)
Q Consensus 107 -~~~G~~YFicg~~gHC~~GmKl~I~V~~~~~~ 138 (193)
+++|++||||++++||++||||+|+|....+.
T Consensus 80 ~~~~G~~YFicg~~gHC~~GmKl~I~V~~~~~~ 112 (138)
T 1jer_A 80 LDELGMHYFVCTVGTHCSNGQKLSINVVAANAT 112 (138)
T ss_dssp CCSSEEEEEECCSTTTGGGTCEEEEEEECCC--
T ss_pred ccCCcCEEEEcCCCCccccCCEEEEEEcCCCCC
Confidence 99999999999999999999999999987654
No 2
>1ws8_A Mavicyanin; oxidized form, phytocyanin, cupredoxin, electron transport; 1.60A {Cucurbita pepo} SCOP: b.6.1.1 PDB: 1ws7_A
Probab=100.00 E-value=5.8e-42 Score=261.17 Aligned_cols=106 Identities=38% Similarity=0.692 Sum_probs=98.8
Q ss_pred eeeEEEecCCCCCCCCCCCCcccccccccCCeeeeCCEEEEEeCCCCCeEEEEcccCCCCCCCCCCceeccCCceEEEec
Q 029432 28 FCHQYKVGDLDGWGIPTSANPLVYAKWSKYHTFAIGDSLLFLYPPSQDSVIQVTAQSYDSCKLKDPILYMNNGNSLFNIT 107 (193)
Q Consensus 28 ~A~~~~VG~~~GW~~~~~~~~~~Y~~WA~~~~F~vGD~LvF~y~~~~hsV~~V~~~~Y~~C~~s~pi~~~~~G~~~v~L~ 107 (193)
+|++|+|||+.||+++++ .+|++||++++|+|||+|+|+|.+++|+|+||++++|+.|+.++|+..+++|+++|+|+
T Consensus 1 ~a~~~~VG~~~GW~~~~~---~~Y~~Wa~~~~F~vGD~LvF~y~~~~hsV~~V~~~~y~~C~~~~p~~~~~~G~~~v~L~ 77 (109)
T 1ws8_A 1 MATVHKVGDSTGWTTLVP---YDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNSSSPAASYTSGADSIPLK 77 (109)
T ss_dssp CCCEEETTGGGCSCSSSC---CCHHHHHHTSCBCTTCEEEEECCTTTCCEEEECHHHHHHTCCSSCSEEECSSEEEEECC
T ss_pred CCcEEEeCCCCCccCCCC---cChhHhhcCCcCcCCCEEEEeecCCCceEEEEChHHCCcccCCCcccccCCCCEEEEEC
Confidence 368999999999999742 46999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccEEEEcCCCCcccCCCeEEEEeeCCC
Q 029432 108 KEGNFYFTSGEPGHCQKKQKLHITVGNVS 136 (193)
Q Consensus 108 ~~G~~YFicg~~gHC~~GmKl~I~V~~~~ 136 (193)
++|++||||++++||++||||+|+|.+..
T Consensus 78 ~~G~~yFic~~~gHC~~GmKl~I~V~~~~ 106 (109)
T 1ws8_A 78 RPGTFYFLCGIPGHCQLGQKVEIKVDPGS 106 (109)
T ss_dssp SSEEEEEECCSTTTTTTTCEEEEEECC--
T ss_pred CCcCEEEECCCCCcccCCCEEEEEEcCCC
Confidence 99999999999999999999999998643
No 3
>1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta barrel, electron transport; 1.80A {Armoracia rusticana} PDB: 1x9r_A
Probab=100.00 E-value=2e-41 Score=260.77 Aligned_cols=106 Identities=32% Similarity=0.588 Sum_probs=97.2
Q ss_pred eEEEecCCCCCCCCCCCCcccccccccCCeeeeCCEEEEEeCCCCCeEEEEcccCCCCCCCCCCceeccCCceEEEeccc
Q 029432 30 HQYKVGDLDGWGIPTSANPLVYAKWSKYHTFAIGDSLLFLYPPSQDSVIQVTAQSYDSCKLKDPILYMNNGNSLFNITKE 109 (193)
Q Consensus 30 ~~~~VG~~~GW~~~~~~~~~~Y~~WA~~~~F~vGD~LvF~y~~~~hsV~~V~~~~Y~~C~~s~pi~~~~~G~~~v~L~~~ 109 (193)
++|+|||+.||+++. +..+|++||++++|+|||+|+|+|.+++|+|+||+|++|++|+.++++..+++|+++|+|+++
T Consensus 2 ~~~~VG~~~GW~~~~--~~~~Y~~Wa~~~~f~vGD~L~F~y~~~~HsV~~V~~~~y~~C~~~~~~~~~~~G~~~v~l~~~ 79 (116)
T 1x9u_A 2 EDYDVGGDMEWKRPS--DPKFYITWATGKTFRVGDELEFDFAAGMHDVAVVTKDAFDNCKKENPISHMTTPPVKIMLNTT 79 (116)
T ss_dssp CEEETTGGGCSSCCS--STTHHHHHHTTCCEETTCEEEECCCTTTCCEEEECHHHHHTTCCSSCSEEECSSSEEEECCSC
T ss_pred eEEEECCcCcCcCCC--CCcchhhccccccCcCCCEEEEEecCCCCeEEEEChhhcCccCCCCCccccCCCCeEEEECCC
Confidence 579999999999973 246799999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEcCCCCcccCCCeEEE-EeeCCCC
Q 029432 110 GNFYFTSGEPGHCQKKQKLHI-TVGNVSA 137 (193)
Q Consensus 110 G~~YFicg~~gHC~~GmKl~I-~V~~~~~ 137 (193)
|++||||++++||++||||+| +|.+..+
T Consensus 80 G~~yFic~~~~HC~~Gmkl~In~V~~~~~ 108 (116)
T 1x9u_A 80 GPQYYICTVGDHCRVGQKLSINVVGAGGA 108 (116)
T ss_dssp EEEEEECCSTTTTTTTCEEEEEEECC---
T ss_pred CCEEEECCCCCccccCCEEEEEEECCCCC
Confidence 999999999999999999999 7775443
No 4
>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1
Probab=100.00 E-value=1.4e-39 Score=242.83 Aligned_cols=96 Identities=30% Similarity=0.594 Sum_probs=92.2
Q ss_pred eEEEecCCCCCCCCCCCCcccccccccCCeeeeCCEEEEEeCCCCCeEEEEcccCCCCCCCCCCceeccCCceEEEeccc
Q 029432 30 HQYKVGDLDGWGIPTSANPLVYAKWSKYHTFAIGDSLLFLYPPSQDSVIQVTAQSYDSCKLKDPILYMNNGNSLFNITKE 109 (193)
Q Consensus 30 ~~~~VG~~~GW~~~~~~~~~~Y~~WA~~~~F~vGD~LvF~y~~~~hsV~~V~~~~Y~~C~~s~pi~~~~~G~~~v~L~~~ 109 (193)
++|+|||+.||++ +|++||++++|++||+|+|+|.+++|+|+||++++|+.|+.++|+..+++|+++|+| ++
T Consensus 1 ~~~~VG~~~GW~~-------~y~~Wa~~~~f~vGD~L~F~y~~~~hsV~~v~~~~y~~C~~~~~~~~~~~G~~~v~L-~~ 72 (96)
T 2cbp_A 1 AVYVVGGSGGWTF-------NTESWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNTPAGAKVYTSGRDQIKL-PK 72 (96)
T ss_dssp CEEETTGGGCSCS-------SCTTTTTTCCBCTTCEEEEECCTTTCCEEEECHHHHHHTCCCTTCEEECSSEEEEEC-CS
T ss_pred CEEEECCcCCCcc-------ChhhhccCceEcCCCEEEEEecCCCCEEEEECHHHCCccCCCCCcccccCCCeEEEe-cC
Confidence 4799999999997 399999999999999999999999999999999999999999999999999999999 99
Q ss_pred ccEEEEcCCCCcccCCCeEEEEee
Q 029432 110 GNFYFTSGEPGHCQKKQKLHITVG 133 (193)
Q Consensus 110 G~~YFicg~~gHC~~GmKl~I~V~ 133 (193)
|++||||++++||++||||+|+|+
T Consensus 73 g~~yFic~~~~HC~~Gmkl~I~Vl 96 (96)
T 2cbp_A 73 GQSYFICNFPGHCQSGMKIAVNAL 96 (96)
T ss_dssp EEEEEECCSTTTGGGTCEEEEEEC
T ss_pred CCEEEEcCCCCccccCCEEEEEEC
Confidence 999999999999999999999985
No 5
>1f56_A Plantacyanin; cupredoxin, copper protein, beta barrel, plant protein; 2.05A {Spinacia oleracea} SCOP: b.6.1.1
Probab=100.00 E-value=1.6e-35 Score=218.92 Aligned_cols=91 Identities=29% Similarity=0.573 Sum_probs=86.2
Q ss_pred eEEEecCCCCCCCCCCCCcccccccccCCeeeeCCEEEEEeCCCCCeEEEEcccCCCCCCCCCCceeccCCceEEEeccc
Q 029432 30 HQYKVGDLDGWGIPTSANPLVYAKWSKYHTFAIGDSLLFLYPPSQDSVIQVTAQSYDSCKLKDPILYMNNGNSLFNITKE 109 (193)
Q Consensus 30 ~~~~VG~~~GW~~~~~~~~~~Y~~WA~~~~F~vGD~LvF~y~~~~hsV~~V~~~~Y~~C~~s~pi~~~~~G~~~v~L~~~ 109 (193)
++|+| ||+++ ++||++++|++||+|+|+|.+++|+|+||++++|+.|+.++|+..+++|+++|+|+ +
T Consensus 1 ~~y~V----gW~~~--------~~Wa~~~~f~vGD~L~F~y~~~~hsV~~v~~~~y~~C~~~~~~~~~~~G~~~v~L~-~ 67 (91)
T 1f56_A 1 AVYNI----GWSFN--------VNGARGKSFRAGDVLVFKYIKGQHNVVAVNGRGYASCSAPRGARTYSSGQDRIKLT-R 67 (91)
T ss_dssp CEEEE----ECSSS--------CBSCTTCCBCTTCEEEEECCBTTBCEEEECHHHHHTTCCCTTCEEECSSEEEEECC-S
T ss_pred CEEEE----eCCCC--------CcCcCCccEeCCCEEEEEccCCCCeEEEECHHHcCCcCCCCCcccccCCCcEEEeC-C
Confidence 46999 89973 79999999999999999999999999999999999999999999999999999996 8
Q ss_pred ccEEEEcCCCCcccCCCeEEEEee
Q 029432 110 GNFYFTSGEPGHCQKKQKLHITVG 133 (193)
Q Consensus 110 G~~YFicg~~gHC~~GmKl~I~V~ 133 (193)
|++||||++++||++||||+|+|.
T Consensus 68 g~~yFic~~~~HC~~Gmkl~I~v~ 91 (91)
T 1f56_A 68 GQNYFICSFPGHCGGGMKIAINAK 91 (91)
T ss_dssp EEEEEECCSTTTTTTTCEEEEEEC
T ss_pred CCeEEEcCCCCccccCCEEEEEEC
Confidence 999999999999999999999983
No 6
>1qhq_A Protein (auracyanin); electron transfer, cupredoxin, blue copper protein, azurin-L thermophIle; 1.55A {Chloroflexus aurantiacus} SCOP: b.6.1.1 PDB: 1ov8_A
Probab=99.31 E-value=5e-12 Score=97.59 Aligned_cols=96 Identities=15% Similarity=0.232 Sum_probs=65.7
Q ss_pred ceeeEEEecCC-CCCCCCCCCCcccccccccCCeeeeCCEEEEEeCC-----CCCeEEEEccc-CCCCC-----------
Q 029432 27 SFCHQYKVGDL-DGWGIPTSANPLVYAKWSKYHTFAIGDSLLFLYPP-----SQDSVIQVTAQ-SYDSC----------- 88 (193)
Q Consensus 27 a~A~~~~VG~~-~GW~~~~~~~~~~Y~~WA~~~~F~vGD~LvF~y~~-----~~hsV~~V~~~-~Y~~C----------- 88 (193)
....++.|+-. ++|.+.++ ..+++.||++.|.|.+ ..|+++..+.. ++..+
T Consensus 14 ~~~~~v~V~~~~~~~~F~P~-----------~i~v~~G~tV~~~~~N~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (140)
T 1qhq_A 14 TPAQTVEVRAAPDALAFAQT-----------SLSLPANTVVRLDFVNQNNLGVQHNWVLVNGGDDVAAAVNTAAQNNADA 82 (140)
T ss_dssp CCSEEEEEEBCSSSSSBSCS-----------EEEEETTCEEEEEEEECCSSCCCBCCEEESSSHHHHHHHHHHHHTCGGG
T ss_pred CCCEEEEEEEeCCCceEeCC-----------eEEECCCCEEEEEEECCCCCCCceeEEEeccCcchhhhhhhhhhhcccc
Confidence 34467777753 46888653 5789999999998865 57999887422 11110
Q ss_pred ------CCCCCc---eeccCC---ceEEEecccccEEEEcCCCCcccCCCeEEEEee
Q 029432 89 ------KLKDPI---LYMNNG---NSLFNITKEGNFYFTSGEPGHCQKKQKLHITVG 133 (193)
Q Consensus 89 ------~~s~pi---~~~~~G---~~~v~L~~~G~~YFicg~~gHC~~GmKl~I~V~ 133 (193)
+..+.+ .....| ..+|+++++|.|||+|++++||..|||..|+|.
T Consensus 83 ~~~~~~~~~~~~~~t~~l~pG~~~~~~~~~~~~G~y~f~C~~~~H~~~GM~g~i~V~ 139 (140)
T 1qhq_A 83 LFVPPPDTPNALAWTAMLNAGESGSVTFRTPAPGTYLYICTFPGHYLAGMKGTLTVT 139 (140)
T ss_dssp TTCCCTTCTTEEEECCCBCTTEEEEEEEECCSSEEEEEECCSTTTTTTTCEEEEEEE
T ss_pred cccCccccccccccceeeCCCceeEEEEEeCCCeeEEEEeCCcCHhhcCCEEEEEEc
Confidence 000110 112233 346788899999999999999999999999996
No 7
>1bxv_A Plastocyanin; copper protein, electron transfer; 1.80A {Synechococcus elongatus} SCOP: b.6.1.1 PDB: 1bxu_A
Probab=99.23 E-value=2.4e-11 Score=86.30 Aligned_cols=85 Identities=14% Similarity=0.143 Sum_probs=62.0
Q ss_pred EEEecCC-CCCCCCCCCCcccccccccCCeeeeCCEEEEEeCC-CCCeEEEEcccCCCCCCCCCCceeccCC-ceEEEec
Q 029432 31 QYKVGDL-DGWGIPTSANPLVYAKWSKYHTFAIGDSLLFLYPP-SQDSVIQVTAQSYDSCKLKDPILYMNNG-NSLFNIT 107 (193)
Q Consensus 31 ~~~VG~~-~GW~~~~~~~~~~Y~~WA~~~~F~vGD~LvF~y~~-~~hsV~~V~~~~Y~~C~~s~pi~~~~~G-~~~v~L~ 107 (193)
+..+|++ .+|.+.|+ ..++++||+|.|++.. ..|+|.......+. ........| ...++++
T Consensus 4 ~v~~~~~~~~~~f~P~-----------~i~v~~Gd~V~~~n~~~~~H~v~~~~~~~~~-----~~~~~~~~g~~~~~~f~ 67 (91)
T 1bxv_A 4 AIKMGADNGMLAFEPS-----------TIEIQAGDTVQWVNNKLAPHNVVVEGQPELS-----HKDLAFSPGETFEATFS 67 (91)
T ss_dssp EEEESCTTSCSSEESS-----------EEEECTTCEEEEEECSSCCEEEEETTCGGGC-----EEEEECSTTCEEEEECC
T ss_pred EEEEecCCCccEEeCC-----------EEEECCCCEEEEEECCCCCcEEEEeCCCccC-----cccceeCCCCEEEEEeC
Confidence 4567764 45877653 4689999999999874 68999876533221 111123344 4578899
Q ss_pred ccccEEEEcCCCCcccCCCeEEEEee
Q 029432 108 KEGNFYFTSGEPGHCQKKQKLHITVG 133 (193)
Q Consensus 108 ~~G~~YFicg~~gHC~~GmKl~I~V~ 133 (193)
++|+|+|+|. .||..||+..|.|.
T Consensus 68 ~~G~y~~~C~--~H~~~gM~g~i~V~ 91 (91)
T 1bxv_A 68 EPGTYTYYCE--PHRGAGMVGKIVVQ 91 (91)
T ss_dssp SCEEEEEECT--TTGGGTCEEEEEEC
T ss_pred CCEEEEEEeC--CCccCCCEEEEEEC
Confidence 9999999999 89999999999984
No 8
>2cal_A Rusticyanin; iron respiratory electron transport chain, blue protein, electron transport, metal- binding, periplasmic; 1.10A {Thiobacillus ferrooxidans} PDB: 1cur_A 1gy2_A 1a3z_A 1e30_A 1gy1_A 1rcy_A 1a8z_A 2cak_A
Probab=99.16 E-value=4.5e-11 Score=94.87 Aligned_cols=76 Identities=17% Similarity=0.277 Sum_probs=59.7
Q ss_pred CCeeeeCCEEEEEeCCC----CCeEEEEc-ccCCCCCCCCCCceec-------cCCc---e--EEEecccccEEEEcCCC
Q 029432 57 YHTFAIGDSLLFLYPPS----QDSVIQVT-AQSYDSCKLKDPILYM-------NNGN---S--LFNITKEGNFYFTSGEP 119 (193)
Q Consensus 57 ~~~F~vGD~LvF~y~~~----~hsV~~V~-~~~Y~~C~~s~pi~~~-------~~G~---~--~v~L~~~G~~YFicg~~ 119 (193)
..++++||+|+|++.+. .|++..++ ...|+.|.....+..+ ..|. . +|++ ++|+|||+|+.+
T Consensus 62 ~i~V~~GD~V~~~~tN~~~~~~H~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~PG~sgt~t~tft~-~pGtY~y~C~~~ 140 (154)
T 2cal_A 62 TLEIPAGATVDVTFINTNKGFGHSFDITKKGPPYAVMPVIDPIVAGTGFSPVPKDGKFGYTDFTWHP-TAGTYYYVCQIP 140 (154)
T ss_dssp EEEECTTCEEEEEEEECCTTCCCCCEEESCCSCCCSSCCCCSEEEEBCCCCCCBTTBEEEEEEEECC-CSEEEEEECCST
T ss_pred EEEEeCCCEEEEEEEcCCCCeeeEEEEeecCcchhccccccccccccccccccCCCCceEEEEEEEE-CCceEEEECCCC
Confidence 46899999999999653 69999994 5578888766554322 2333 3 4577 999999999999
Q ss_pred CcccCCCeEEEEee
Q 029432 120 GHCQKKQKLHITVG 133 (193)
Q Consensus 120 gHC~~GmKl~I~V~ 133 (193)
+||+.|||..|.|.
T Consensus 141 gH~~~GM~G~IiV~ 154 (154)
T 2cal_A 141 GMAATGMFGKIVVK 154 (154)
T ss_dssp TTGGGTCEEEEEEC
T ss_pred CHHHCCCEEEEEEC
Confidence 99999999999884
No 9
>1iuz_A Plastocyanin; electron transport; 1.60A {Ulva pertusa} SCOP: b.6.1.1 PDB: 7pcy_A
Probab=98.98 E-value=1.2e-09 Score=79.23 Aligned_cols=91 Identities=15% Similarity=0.189 Sum_probs=62.1
Q ss_pred eEEEecC-CCCCCCCCCCCcccccccccCCeeeeCCEEEEEeCC-CCCeEEEEcc---cCCCCCCCCCCceeccCCce-E
Q 029432 30 HQYKVGD-LDGWGIPTSANPLVYAKWSKYHTFAIGDSLLFLYPP-SQDSVIQVTA---QSYDSCKLKDPILYMNNGNS-L 103 (193)
Q Consensus 30 ~~~~VG~-~~GW~~~~~~~~~~Y~~WA~~~~F~vGD~LvF~y~~-~~hsV~~V~~---~~Y~~C~~s~pi~~~~~G~~-~ 103 (193)
.+..+|+ +.++.+.|+ ..++++||+|.|.+.. ..|+|...+. ++++.+...........|.+ .
T Consensus 2 ~~V~m~~~~~~~~F~P~-----------~i~v~~GdtV~~~n~~~~~H~v~~~~~~~p~g~~~~~~~~~~~~~~~g~~~~ 70 (98)
T 1iuz_A 2 QIVKLGGDDGSLAFVPS-----------KISVAAGEAIEFVNNAGFPHNIVFDEDAVPAGVDADAISYDDYLNSKGETVV 70 (98)
T ss_dssp EEEEESCTTSCCSEESS-----------EEEECTTCEEEEEECSSCCEEEEECTTSSCTTCCHHHHCEEEEECSTTCEEE
T ss_pred EEEEEecCCCCcEEeCC-----------EEEECCCCEEEEEECCCCCEEEEEeCCCCccccccccccccccccCCCCEEE
Confidence 3455654 346777653 5689999999999875 4899987542 12332221111122344443 7
Q ss_pred EEecccccEEEEcCCCCcccCCCeEEEEee
Q 029432 104 FNITKEGNFYFTSGEPGHCQKKQKLHITVG 133 (193)
Q Consensus 104 v~L~~~G~~YFicg~~gHC~~GmKl~I~V~ 133 (193)
++++++|.|+|+|.. ||..||+..|.|.
T Consensus 71 ~tf~~~G~y~y~C~~--H~~~gM~G~I~V~ 98 (98)
T 1iuz_A 71 RKLSTPGVYGVYCEP--HAGAGMKMTITVQ 98 (98)
T ss_dssp EECCSCEEEEEECTT--TGGGTCEEEEEEC
T ss_pred EEcCCCEEEEEEchh--hccCCCEEEEEEC
Confidence 889999999999995 9999999999884
No 10
>2aan_A Auracyanin A; cupredoxin fold, electron transport; 1.85A {Chloroflexus aurantiacus}
Probab=98.93 E-value=8e-09 Score=79.49 Aligned_cols=94 Identities=15% Similarity=0.207 Sum_probs=64.6
Q ss_pred eeeEEEecC-CCCCCCCCCCCcccccccccCCeeeeCCEEEEEeCCC----CCeEEEEccc------------------C
Q 029432 28 FCHQYKVGD-LDGWGIPTSANPLVYAKWSKYHTFAIGDSLLFLYPPS----QDSVIQVTAQ------------------S 84 (193)
Q Consensus 28 ~A~~~~VG~-~~GW~~~~~~~~~~Y~~WA~~~~F~vGD~LvF~y~~~----~hsV~~V~~~------------------~ 84 (193)
...+..||. ..++.+.++ ..++++||++.|++.+. .|++...... +
T Consensus 17 ~~~~V~v~~~~~~~~F~p~-----------~i~v~~G~~V~~~~~N~~~~~~H~~~i~~~~~~~~~~~~~~~~~~g~~~~ 85 (139)
T 2aan_A 17 GPVTIEIGSKGEELAFDKT-----------ELTVSAGQTVTIRFKNNSAVQQHNWILVKGGEAEAANIANAGLSAGPAAN 85 (139)
T ss_dssp CCEEEEEEBCTTSSSBSCS-----------EEEECTTCEEEEEEECCCSSCCBCCEEESSCHHHHHHHHHHHHHHCGGGT
T ss_pred cCEEEEEEecCCccEEcCC-----------eEEECCCCEEEEEEEeCCCCCCeeEEEeccccccchhhhhhhhccccccc
Confidence 335666752 346777653 46899999999888643 7999887532 5
Q ss_pred CCCCCCCCCc---eeccCCc-eEEE--ecccccEEEEcCCCCcccCCCeEEEEee
Q 029432 85 YDSCKLKDPI---LYMNNGN-SLFN--ITKEGNFYFTSGEPGHCQKKQKLHITVG 133 (193)
Q Consensus 85 Y~~C~~s~pi---~~~~~G~-~~v~--L~~~G~~YFicg~~gHC~~GmKl~I~V~ 133 (193)
|..|+..+.+ .....|. ..++ ++++|+|+|+|.+++||. ||+..|.|.
T Consensus 86 ~~p~~~~~~~~~t~~l~pGet~~v~f~~~~pG~y~f~C~~~~H~~-GM~G~i~V~ 139 (139)
T 2aan_A 86 YLPADKSNIIAESPLANGNETVEVTFTAPAAGTYLYICTVPGHYP-LMQGKLVVN 139 (139)
T ss_dssp TCCSCCTTEEEECCCBCTTCEEEEEEECCSSEEEEEECCSTTTTT-TSEEEEEEC
T ss_pred ccCcccccccccccccCCCCEEEEEEECCCCeEEEEEcCCCChHH-cCEEEEEEC
Confidence 6666533221 1133443 3444 458999999999999999 999999884
No 11
>1pmy_A Pseudoazurin; electron transfer(cuproprotein); 1.50A {Methylobacterium extorquens} SCOP: b.6.1.1
Probab=98.93 E-value=2.6e-09 Score=81.86 Aligned_cols=82 Identities=18% Similarity=0.207 Sum_probs=59.0
Q ss_pred cCCCCCCCCCCCCcccccccccCCeeeeCCEEEEEeCCCCCeEEEEcccCCCCCCCCCCcee-ccCCc-eEEEecccccE
Q 029432 35 GDLDGWGIPTSANPLVYAKWSKYHTFAIGDSLLFLYPPSQDSVIQVTAQSYDSCKLKDPILY-MNNGN-SLFNITKEGNF 112 (193)
Q Consensus 35 G~~~GW~~~~~~~~~~Y~~WA~~~~F~vGD~LvF~y~~~~hsV~~V~~~~Y~~C~~s~pi~~-~~~G~-~~v~L~~~G~~ 112 (193)
|++.++.+.|+ ..++++||+|.|.+....|+|+... .|.......+ ...|. .+++++++|.|
T Consensus 11 g~~g~~~F~P~-----------~i~V~~GdtV~f~n~~~~H~v~~~~-----~~~p~~~~~~~~~pG~t~~~tF~~~G~y 74 (123)
T 1pmy_A 11 GPGGMMVFDPA-----------LVRLKPGDSIKFLPTDKGHNVETIK-----GMAPDGADYVKTTVGQEAVVKFDKEGVY 74 (123)
T ss_dssp ETTEEEEEESS-----------EEEECTTCEEEEECSSSSCCCEECT-----TSSCTTCCCCBCCTTSCEEEECCSCEEE
T ss_pred cCCCCceEeCC-----------EEEECCCCEEEEEECCCCcEEEEec-----ccCCCCccceecCCCCEEEEEeCCCeEE
Confidence 55445776553 4689999999999987789998752 2222111111 12233 47889999999
Q ss_pred EEEcCCCCcccCCCeEEEEeeC
Q 029432 113 YFTSGEPGHCQKKQKLHITVGN 134 (193)
Q Consensus 113 YFicg~~gHC~~GmKl~I~V~~ 134 (193)
+|+|. .||..||+..|+|..
T Consensus 75 ~y~C~--~H~~~gM~G~I~V~~ 94 (123)
T 1pmy_A 75 GFKCA--PHYMMGMVALVVVGD 94 (123)
T ss_dssp EEECS--TTTTTTCEEEEEESS
T ss_pred EEEeC--CccccCCEEEEEEcC
Confidence 99998 599999999999985
No 12
>1plc_A Plastocyanin; electron transport; 1.33A {Populus nigra} SCOP: b.6.1.1 PDB: 1pnc_A 1pnd_A 1tkw_A* 2pcy_A 3pcy_A 4pcy_A 5pcy_A 6pcy_A 1jxg_A 1ag6_A 1ylb_B 2pcf_A* 1oow_A 1tef_A 9pcy_A 1teg_A 1byo_A
Probab=98.91 E-value=5.3e-09 Score=75.61 Aligned_cols=89 Identities=13% Similarity=0.236 Sum_probs=60.8
Q ss_pred EEEecCC-CCCCCCCCCCcccccccccCCeeeeCCEEEEEeCCC-CCeEEEEccc---CCCCCCC---CCCceeccCC-c
Q 029432 31 QYKVGDL-DGWGIPTSANPLVYAKWSKYHTFAIGDSLLFLYPPS-QDSVIQVTAQ---SYDSCKL---KDPILYMNNG-N 101 (193)
Q Consensus 31 ~~~VG~~-~GW~~~~~~~~~~Y~~WA~~~~F~vGD~LvF~y~~~-~hsV~~V~~~---~Y~~C~~---s~pi~~~~~G-~ 101 (193)
+..+|++ .++.+.|+ ..++++||+|.|++... .|+|...+.. +.+.+.. .+.+ ....| .
T Consensus 2 ~v~m~~~~~~~~F~P~-----------~i~v~~G~tV~~~n~~~~~H~v~~~~~~~p~~~~~~~~~~~~~~~-~~~~G~~ 69 (99)
T 1plc_A 2 DVLLGADDGSLAFVPS-----------EFSISPGEKIVFKNNAGFPHNIVFDEDSIPSGVDASKISMSEEDL-LNAKGET 69 (99)
T ss_dssp EEEESCTTCCSCEESS-----------EEEECTTCEEEEEECSSCCBCCEECTTSSCTTCCHHHHCCCTTCC-BCSTTCE
T ss_pred EEEEecCCCcceEeCC-----------EEEECCCCEEEEEECCCCceEEEEeCCCCcccccccccccccCcc-ccCCCCE
Confidence 3456654 45776552 46899999999988764 8999876431 1222211 0111 12334 3
Q ss_pred eEEEecccccEEEEcCCCCcccCCCeEEEEee
Q 029432 102 SLFNITKEGNFYFTSGEPGHCQKKQKLHITVG 133 (193)
Q Consensus 102 ~~v~L~~~G~~YFicg~~gHC~~GmKl~I~V~ 133 (193)
..++++++|+|+|+|. +||+.||+..|+|.
T Consensus 70 ~~~tf~~~G~y~~~C~--~H~~~gM~G~i~V~ 99 (99)
T 1plc_A 70 FEVALSNKGEYSFYCS--PHQGAGMVGKVTVN 99 (99)
T ss_dssp EEEECCSCEEEEEECG--GGTTTTCEEEEEEC
T ss_pred EEEEECCCceEEEEcC--CCcccCCEEEEEEC
Confidence 4788999999999999 89999999999984
No 13
>1paz_A Pseudoazurin precursor; electron transfer(cuproprotein); 1.55A {Alcaligenes faecalis} SCOP: b.6.1.1 PDB: 1pza_A 1pzb_A 1pzc_A 2p80_D 3nyk_A 3paz_A 8paz_A 4paz_A 5paz_A 6paz_A 7paz_A 1py0_A*
Probab=98.91 E-value=3.6e-09 Score=81.05 Aligned_cols=82 Identities=15% Similarity=0.207 Sum_probs=58.6
Q ss_pred cCCCCCCCCCCCCcccccccccCCeeeeCCEEEEEeCCCCCeEEEEcccCCCCCCCCCCcee-ccCCc-eEEEecccccE
Q 029432 35 GDLDGWGIPTSANPLVYAKWSKYHTFAIGDSLLFLYPPSQDSVIQVTAQSYDSCKLKDPILY-MNNGN-SLFNITKEGNF 112 (193)
Q Consensus 35 G~~~GW~~~~~~~~~~Y~~WA~~~~F~vGD~LvF~y~~~~hsV~~V~~~~Y~~C~~s~pi~~-~~~G~-~~v~L~~~G~~ 112 (193)
|++.++.+.|+ ..++++||+|.|.+....|+|.... .|...+...+ ...|. .+++++++|.|
T Consensus 11 g~~g~~~F~P~-----------~i~V~~GdtV~f~~~~~~H~v~~~~-----~~~p~~~~~~~~~pG~t~~~tF~~~G~y 74 (123)
T 1paz_A 11 GAEGAMVFEPA-----------YIKANPGDTVTFIPVDKGHNVESIK-----DMIPEGAEKFKSKINENYVLTVTQPGAY 74 (123)
T ss_dssp ETTEEEEEESS-----------EEEECTTCEEEEEESSSSCCCEECT-----TCSCTTCCCCBCCTTCCEEEECCSCEEE
T ss_pred cCCCCceEeCC-----------EEEECCCCEEEEEECCCCeEEEEec-----ccCCCCccceecCCCCEEEEEeCCCEEE
Confidence 55445776553 5689999999999987789998641 2222111111 11233 47889999999
Q ss_pred EEEcCCCCcccCCCeEEEEeeC
Q 029432 113 YFTSGEPGHCQKKQKLHITVGN 134 (193)
Q Consensus 113 YFicg~~gHC~~GmKl~I~V~~ 134 (193)
+|+|. .||..||+..|+|..
T Consensus 75 ~y~C~--~H~~~gM~G~I~V~~ 94 (123)
T 1paz_A 75 LVKCT--PHYAMGMIALIAVGD 94 (123)
T ss_dssp EEECT--TTGGGTCEEEEEESS
T ss_pred EEEeC--CcccCCCEEEEEEcC
Confidence 99998 599999999999985
No 14
>2gim_A Plastocyanin; beta sheet, Cu, helix, electron transport; 1.60A {Anabaena variabilis} SCOP: b.6.1.1 PDB: 1fa4_A 1nin_A 1tu2_A* 2cj3_A
Probab=98.90 E-value=1e-08 Score=74.75 Aligned_cols=89 Identities=20% Similarity=0.202 Sum_probs=60.3
Q ss_pred EEEecCC-CCCCCCCCCCcccccccccCCeeeeCCEEEEEeCC-CCCeEEEEcccCCC-----CCCC-CCCceeccCC-c
Q 029432 31 QYKVGDL-DGWGIPTSANPLVYAKWSKYHTFAIGDSLLFLYPP-SQDSVIQVTAQSYD-----SCKL-KDPILYMNNG-N 101 (193)
Q Consensus 31 ~~~VG~~-~GW~~~~~~~~~~Y~~WA~~~~F~vGD~LvF~y~~-~~hsV~~V~~~~Y~-----~C~~-s~pi~~~~~G-~ 101 (193)
+..+|.+ .++.+.|+ ..++++||++.|.+.. ..|+|...+....+ .... .+.. ....| .
T Consensus 5 ~V~~~~~~~~~~F~P~-----------~i~v~~Gd~V~~~n~~~~~H~~~~~~~~~~~~~g~~~~~~~~~~~-~~~pG~~ 72 (106)
T 2gim_A 5 TVKLGSDKGLLVFEPA-----------KLTIKPGDTVEFLNNKVPPHNVVFDAALNPAKSADLAKSLSHKQL-LMSPGQS 72 (106)
T ss_dssp EEEESCTTCCSSEESS-----------EEEECTTCEEEEEECSSSCCCBEECSSSSTTCCHHHHHHHCBCSC-CCSTTCE
T ss_pred EEEEEecCCcceEcCC-----------EEEECCCCEEEEEECCCCCceEEEeCCCCcccccccchhccccce-eeCCCCE
Confidence 4566653 56887653 4689999999999875 57999865322110 0000 0111 12333 3
Q ss_pred eEEEe---cccccEEEEcCCCCcccCCCeEEEEee
Q 029432 102 SLFNI---TKEGNFYFTSGEPGHCQKKQKLHITVG 133 (193)
Q Consensus 102 ~~v~L---~~~G~~YFicg~~gHC~~GmKl~I~V~ 133 (193)
..+++ +++|.|+|+|. +||+.||+..|.|.
T Consensus 73 ~~~~f~~~~~~G~y~y~C~--~H~~~GM~G~i~V~ 105 (106)
T 2gim_A 73 TSTTFPADAPAGEYTFYCE--PHRGAGMVGKITVA 105 (106)
T ss_dssp EEEECCTTCCSEEEEEECT--TTGGGTCEEEEEEC
T ss_pred EEEEEecCCCCceEEEEeC--ChhhcCcEEEEEEc
Confidence 47788 89999999999 89999999999985
No 15
>2plt_A Plastocyanin; electron transport; 1.50A {Chlamydomonas reinhardtii} SCOP: b.6.1.1
Probab=98.88 E-value=4.1e-09 Score=75.85 Aligned_cols=91 Identities=12% Similarity=0.122 Sum_probs=61.4
Q ss_pred eEEEecCC-CCCCCCCCCCcccccccccCCeeeeCCEEEEEeCCC-CCeEEEEcc---cCCCCCCCCCCceeccCCc-eE
Q 029432 30 HQYKVGDL-DGWGIPTSANPLVYAKWSKYHTFAIGDSLLFLYPPS-QDSVIQVTA---QSYDSCKLKDPILYMNNGN-SL 103 (193)
Q Consensus 30 ~~~~VG~~-~GW~~~~~~~~~~Y~~WA~~~~F~vGD~LvF~y~~~-~hsV~~V~~---~~Y~~C~~s~pi~~~~~G~-~~ 103 (193)
.+..+|++ .++.+.|+ ..++++||++.|+.... .|++...+. ++++.+...........|. .+
T Consensus 2 ~~V~m~~~~~~~~F~P~-----------~i~v~~G~~V~~~n~~~~~H~~~~~~~~~p~~~~~~~~~~~~~~~~pG~~~~ 70 (98)
T 2plt_A 2 ATVKLGADSGALEFVPK-----------TLTIKSGETVNFVNNAGFPHNIVFDEDAIPSGVNADAISRDDYLNAPGETYS 70 (98)
T ss_dssp EEEEESCTTCCSSEESS-----------EEEECTTCEEEEEECSSCCEEEEECGGGSCTTCCHHHHCEEEEECSTTCEEE
T ss_pred EEEEEecCCCCceEeCC-----------EEEECCCCEEEEEECCCCceEEEEeCCCCCCccccccccccceecCCCCEEE
Confidence 45666643 45777552 46899999999988754 799987542 1222221111011233444 47
Q ss_pred EEecccccEEEEcCCCCcccCCCeEEEEee
Q 029432 104 FNITKEGNFYFTSGEPGHCQKKQKLHITVG 133 (193)
Q Consensus 104 v~L~~~G~~YFicg~~gHC~~GmKl~I~V~ 133 (193)
++++++|+|+|+|. .||+.||+..|.|.
T Consensus 71 ~tf~~~G~y~y~C~--~H~~~gM~G~i~V~ 98 (98)
T 2plt_A 71 VKLTAAGEYGYYCE--PHQGAGMVGKIIVQ 98 (98)
T ss_dssp EECCSCEEEEEECG--GGGGGTCEEEEEEC
T ss_pred EEeCCCeEEEEEcC--CccccCCeEEEEEC
Confidence 88899999999999 89999999999984
No 16
>1kdj_A Plastocyanin; electron transfer, photosystem, PAI-PAI stacking; 1.70A {Adiantum capillus-veneris} SCOP: b.6.1.1 PDB: 1kdi_A 2bz7_A 2bzc_A
Probab=98.85 E-value=9.5e-09 Score=74.54 Aligned_cols=89 Identities=15% Similarity=0.171 Sum_probs=61.1
Q ss_pred EEEecCC-CCCCCCCCCCcccccccccCCeeeeCCEEEEEeCC-CCCeEEEEcccCCC----CCCCC-----CCceeccC
Q 029432 31 QYKVGDL-DGWGIPTSANPLVYAKWSKYHTFAIGDSLLFLYPP-SQDSVIQVTAQSYD----SCKLK-----DPILYMNN 99 (193)
Q Consensus 31 ~~~VG~~-~GW~~~~~~~~~~Y~~WA~~~~F~vGD~LvF~y~~-~~hsV~~V~~~~Y~----~C~~s-----~pi~~~~~ 99 (193)
+..+|++ .++.+.|+ ..++++||++.|.+.. ..|++...+.+.++ .|... +.. ....
T Consensus 2 ~V~~g~~~~~~~F~P~-----------~i~v~~G~tV~~~n~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p 69 (102)
T 1kdj_A 2 KVEVGDEVGNFKFYPD-----------SITVSAGEAVEFTLVGETGHNIVFDIPAGAPGTVASELKAASMDENDL-LSED 69 (102)
T ss_dssp EEEESCTTCCCCEESS-----------EEEECTTCCEEEEECSSSCBCCEECCCTTCCHHHHHHHHHTSCCTTCC-BBTT
T ss_pred EEEEecCCCccEEeCC-----------EEEECCCCEEEEEECCCCCeEEEEeCcccccccccchhhcccccccce-ecCC
Confidence 3567763 45776542 4689999999999865 47999876433332 11110 111 1233
Q ss_pred C-ceEEEecccccEEEEcCCCCcccCCCeEEEEee
Q 029432 100 G-NSLFNITKEGNFYFTSGEPGHCQKKQKLHITVG 133 (193)
Q Consensus 100 G-~~~v~L~~~G~~YFicg~~gHC~~GmKl~I~V~ 133 (193)
| ...++++++|+|+|+|. +||..||+..|.|.
T Consensus 70 G~~~~~tf~~~G~y~y~C~--~H~~~gM~G~i~V~ 102 (102)
T 1kdj_A 70 EPSFKAKVSTPGTYTFYCT--PHKSANMKGTLTVK 102 (102)
T ss_dssp BCEEEECCCSCEEEEEECS--TTGGGTCEEEEEEC
T ss_pred CCEEEEEeCCCeEEEEEeC--CCcccCCeEEEEEC
Confidence 4 34778899999999999 99999999999984
No 17
>1byp_A Protein (plastocyanin); electron transfer, photosynthesis, acidic patch, double mutant, electron transport; 1.75A {Silene latifolia subsp} SCOP: b.6.1.1 PDB: 1pla_A 1plb_A
Probab=98.81 E-value=1.7e-08 Score=72.80 Aligned_cols=90 Identities=18% Similarity=0.229 Sum_probs=60.5
Q ss_pred EEEecC-CCCCCCCCCCCcccccccccCCeeeeCCEEEEEeCCC-CCeEEEEccc---CCCCCCCC--CCceeccCC-ce
Q 029432 31 QYKVGD-LDGWGIPTSANPLVYAKWSKYHTFAIGDSLLFLYPPS-QDSVIQVTAQ---SYDSCKLK--DPILYMNNG-NS 102 (193)
Q Consensus 31 ~~~VG~-~~GW~~~~~~~~~~Y~~WA~~~~F~vGD~LvF~y~~~-~hsV~~V~~~---~Y~~C~~s--~pi~~~~~G-~~ 102 (193)
+..+|+ ..++.+.|+ ..++++||+|.|++... .|+|...+.. .++.+... ........| ..
T Consensus 2 ~V~~~~~~~~~~F~P~-----------~i~v~~G~tV~~~n~~~~~H~~~~~~~~~p~g~~~~~~~~~~~~~~~~~G~~~ 70 (99)
T 1byp_A 2 EVLLGSSDGGLAFVPS-----------DLSIASGEKITFKNNAGFPHNDLFDKKEVPAGVDVTKISMPEEDLLNAPGEEY 70 (99)
T ss_dssp EEEESCTTSCCSEESS-----------EEEECTTEEEEEEECSSCCBCCEECTTSSCTTCCHHHHSCCTTCCBCSTTCEE
T ss_pred EEEEecCCCcceEeCC-----------EEEECCCCEEEEEECCCCcceEEEeCCCCccccccccccccccceeeCCCCEE
Confidence 345664 445776552 46899999999998753 7998875421 22222110 000122334 34
Q ss_pred EEEecccccEEEEcCCCCcccCCCeEEEEee
Q 029432 103 LFNITKEGNFYFTSGEPGHCQKKQKLHITVG 133 (193)
Q Consensus 103 ~v~L~~~G~~YFicg~~gHC~~GmKl~I~V~ 133 (193)
+++++++|+|+|+|. .||+.||+..|.|.
T Consensus 71 ~~~f~~~G~y~~~C~--~H~~~gM~G~i~V~ 99 (99)
T 1byp_A 71 SVTLTEKGTYKFYCA--PHAGAGMVGKVTVN 99 (99)
T ss_dssp EEEECSCEEEEEECG--GGTTTTCEEEEEEC
T ss_pred EEEeCCCcEEEEEcC--CccccCCEEEEEEC
Confidence 788999999999999 89999999999984
No 18
>3erx_A Pseudoazurin; copper protein, high-resolution, E transport, metal-binding, transport; 1.25A {Paracoccus pantotrophus} SCOP: b.6.1.1 PDB: 1adw_A
Probab=98.81 E-value=7.1e-09 Score=79.61 Aligned_cols=71 Identities=14% Similarity=0.152 Sum_probs=53.5
Q ss_pred CCeeeeCCEEEEEeCCCCCeEEEEcccCCCCCCCCCCcee-cc-CCceEEEecccccEEEEcCCCCcccCCCeEEEEeeC
Q 029432 57 YHTFAIGDSLLFLYPPSQDSVIQVTAQSYDSCKLKDPILY-MN-NGNSLFNITKEGNFYFTSGEPGHCQKKQKLHITVGN 134 (193)
Q Consensus 57 ~~~F~vGD~LvF~y~~~~hsV~~V~~~~Y~~C~~s~pi~~-~~-~G~~~v~L~~~G~~YFicg~~gHC~~GmKl~I~V~~ 134 (193)
..++++||++.|.+....|+|...+. |...+...+ .. +...+++++++|.|+|+|. .||..||+-.|.|..
T Consensus 22 ~i~V~~GdtV~f~~~~~~H~v~~~~~-----~~P~g~~~f~~~pg~t~s~TF~~pG~y~y~C~--~H~~~GM~G~I~V~~ 94 (123)
T 3erx_A 22 FVRAEPGDVINFVPTDKSHNVEAIKE-----ILPEGVESFKSKINESYTLTVTEPGLYGVKCT--PHFGMGMVGLVQVGD 94 (123)
T ss_dssp EEEECTTEEEEEEESSTTCCCEECTT-----SSCTTCCCCBCCTTCCEEEEECSCEEEEEECG--GGTTTTCEEEEEESS
T ss_pred EEEECCCCEEEEEECCCCceEEEcCC-----cCCCCccceecCCCCEEEEEeCCCeEEEEEeC--CCCcCCcEEEEEECC
Confidence 57999999999999887899987431 222111111 11 2234788999999999999 899999999999985
No 19
>3tu6_A Pseudoazurin (blue copper protein); cupredoxins, beta barrel, electron transfer, redox, electron transport; 2.00A {Sinorhizobium meliloti}
Probab=98.80 E-value=1.1e-08 Score=78.96 Aligned_cols=84 Identities=11% Similarity=0.089 Sum_probs=60.1
Q ss_pred ecCCC-CCCCCCCCCcccccccccCCeeeeCCEEEEEeCCCCCeEEEEcccCCCCCCCCCCceec-cCC-ceEEEecccc
Q 029432 34 VGDLD-GWGIPTSANPLVYAKWSKYHTFAIGDSLLFLYPPSQDSVIQVTAQSYDSCKLKDPILYM-NNG-NSLFNITKEG 110 (193)
Q Consensus 34 VG~~~-GW~~~~~~~~~~Y~~WA~~~~F~vGD~LvF~y~~~~hsV~~V~~~~Y~~C~~s~pi~~~-~~G-~~~v~L~~~G 110 (193)
+|.+. +..+.|+ ..++++||+|.|.+....|+|...+. +.......+. ..| ..+++++++|
T Consensus 11 ~g~~g~~~~F~P~-----------~i~V~~GDtVtf~n~~~~H~v~~~~~-----~~P~g~~~f~s~pGet~s~TF~~pG 74 (127)
T 3tu6_A 11 KAADGRVMAFEPA-----------VIRAQPGDTVTFVAKDKGHNSALMKG-----GAPEGAETWKGKINEEITVTLSKPG 74 (127)
T ss_dssp ECTTSCEEEEESS-----------EEEECTTCEEEEECSSSSCCCEECTT-----CSCTTCCCCBCCTTCCCEEECCSCE
T ss_pred cCCCCcccEEeCC-----------EEEECCCCEEEEEECCCCceEEEccC-----cCCCCccceecCCCCEEEEEeCCCe
Confidence 36544 4776653 57999999999999877899987532 1111111111 123 3488999999
Q ss_pred cEEEEcCCCCcccCCCeEEEEeeCC
Q 029432 111 NFYFTSGEPGHCQKKQKLHITVGNV 135 (193)
Q Consensus 111 ~~YFicg~~gHC~~GmKl~I~V~~~ 135 (193)
.|+|+|. .||..||+..|.|...
T Consensus 75 ~y~y~C~--~H~~~GM~G~I~V~~~ 97 (127)
T 3tu6_A 75 VYMYQCA--PHVGMGMIGAIVVGEP 97 (127)
T ss_dssp EEEEECT--TTGGGTCEEEEEESSC
T ss_pred EEEEEeC--CCCcCCcEEEEEECcC
Confidence 9999999 6999999999999864
No 20
>1b3i_A PETE protein, protein (plastocyanin); electron transport, type I copper protein, photosynthesis; NMR {Prochlorothrix hollandica} SCOP: b.6.1.1 PDB: 2b3i_A 2jxm_A*
Probab=98.79 E-value=1.6e-08 Score=72.64 Aligned_cols=89 Identities=16% Similarity=0.087 Sum_probs=59.7
Q ss_pred EEEecCC-CCCCCCCCCCcccccccccCCeeeeCCEEEEEeCC-CCCeEEEEcccC---CCCCCCCCCceeccCCceEEE
Q 029432 31 QYKVGDL-DGWGIPTSANPLVYAKWSKYHTFAIGDSLLFLYPP-SQDSVIQVTAQS---YDSCKLKDPILYMNNGNSLFN 105 (193)
Q Consensus 31 ~~~VG~~-~GW~~~~~~~~~~Y~~WA~~~~F~vGD~LvF~y~~-~~hsV~~V~~~~---Y~~C~~s~pi~~~~~G~~~v~ 105 (193)
+..+|++ .++.+.|+ ..++++||++.|.+.. ..|++...+... .+.+.. +......+....++
T Consensus 4 ~V~~~~~~~~~~F~P~-----------~i~v~~G~~V~~~n~~~~~H~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~t 71 (97)
T 1b3i_A 4 QIKMGTDKYAPLYEPK-----------ALSISAGDTVEFVMNKVGPHNVIFDKVPAGESAPALSN-TKLAIAPGSFYSVT 71 (97)
T ss_dssp EEEEEETTTEEEEESS-----------EEEECTTCEEEEEECSSCCCCBEEEECCTTSCHHHHCB-CCCCCSCSCCEEEE
T ss_pred EEEEeccCCccEEeCC-----------EEEECCCCEEEEEECCCCCeEEEEeCCCCccccccccc-cceecCCCCEEEEE
Confidence 4456643 45666542 4689999999999875 479998764321 001111 11111122345788
Q ss_pred ecccccEEEEcCCCCcccCCCeEEEEee
Q 029432 106 ITKEGNFYFTSGEPGHCQKKQKLHITVG 133 (193)
Q Consensus 106 L~~~G~~YFicg~~gHC~~GmKl~I~V~ 133 (193)
++++|.|+|+|. +||+.||+..|.|.
T Consensus 72 f~~~G~y~y~C~--~H~~~gM~G~i~V~ 97 (97)
T 1b3i_A 72 LGTPGTYSFYCT--PHRGAGMVGTITVE 97 (97)
T ss_dssp CCSCSEEEEECS--STTTTTCEEEEEEC
T ss_pred eCCCeEEEEEcc--ChhhcCCEEEEEEC
Confidence 899999999999 99999999999984
No 21
>3ef4_A Pseudoazurin, blue copper protein; electron transfer, electron transport; HET: PO4; 1.18A {Hyphomicrobium denitrificans} SCOP: b.6.1.0
Probab=98.77 E-value=2.1e-08 Score=77.23 Aligned_cols=83 Identities=16% Similarity=0.176 Sum_probs=60.5
Q ss_pred ecCCC-CCCCCCCCCcccccccccCCeeeeCCEEEEEeCCCCCeEEEEcccCCCCCCCCCCce-eccCC-ceEEEecccc
Q 029432 34 VGDLD-GWGIPTSANPLVYAKWSKYHTFAIGDSLLFLYPPSQDSVIQVTAQSYDSCKLKDPIL-YMNNG-NSLFNITKEG 110 (193)
Q Consensus 34 VG~~~-GW~~~~~~~~~~Y~~WA~~~~F~vGD~LvF~y~~~~hsV~~V~~~~Y~~C~~s~pi~-~~~~G-~~~v~L~~~G 110 (193)
+|++. ++.+.|+ ..+.++||++.|.+....|+|...+. +....... ....| ..+++++++|
T Consensus 10 ~g~~G~~~~F~P~-----------~i~V~~GDTV~f~n~~~~Hnv~~~~~-----~~p~g~~~~~~~pg~t~s~TF~~~G 73 (124)
T 3ef4_A 10 KDDAGNTMVFQPG-----------FVKVEAGDTVKFVPTDKSHNAESVRE-----VWPEGVAPVKGGFSKEVVFNAEKEG 73 (124)
T ss_dssp ECTTSCEEEEESS-----------EEEECTTCEEEEECSSSSCCCEECTT-----TSCTTSCCCBCCTTCCEEEECCSSE
T ss_pred cCCCCceeEEeCC-----------EEEECCCCEEEEEECCCCccEEEeCC-----cCCCCccccccCCCCEEEEEeCCCe
Confidence 34433 3888763 57999999999999888999987532 22222111 11223 3478899999
Q ss_pred cEEEEcCCCCcccCCCeEEEEeeC
Q 029432 111 NFYFTSGEPGHCQKKQKLHITVGN 134 (193)
Q Consensus 111 ~~YFicg~~gHC~~GmKl~I~V~~ 134 (193)
.|.|+|. .||..||+-.|+|..
T Consensus 74 ~y~Y~C~--~H~~~GM~G~I~V~~ 95 (124)
T 3ef4_A 74 LYVLKCA--PHYGMGMVVLVQVGK 95 (124)
T ss_dssp EEEEECT--TTGGGTCEEEEEESS
T ss_pred EEEEEcC--CCCcCCCEEEEEECC
Confidence 9999997 799999999999986
No 22
>1pcs_A Plastocyanin; electron transport; 2.15A {Synechocystis SP} SCOP: b.6.1.1 PDB: 1m9w_A 1j5c_A 1j5d_A 1jxd_A 1jxf_A
Probab=98.62 E-value=1.2e-07 Score=68.07 Aligned_cols=90 Identities=16% Similarity=0.156 Sum_probs=59.1
Q ss_pred EEEecCC-CCCCCCCCCCcccccccccCCeeeeCCEEEEEeCC-CCCeEEEEcccCC--CCCCCCCCceeccCCc-eEEE
Q 029432 31 QYKVGDL-DGWGIPTSANPLVYAKWSKYHTFAIGDSLLFLYPP-SQDSVIQVTAQSY--DSCKLKDPILYMNNGN-SLFN 105 (193)
Q Consensus 31 ~~~VG~~-~GW~~~~~~~~~~Y~~WA~~~~F~vGD~LvF~y~~-~~hsV~~V~~~~Y--~~C~~s~pi~~~~~G~-~~v~ 105 (193)
+..+|.+ .++.+.|+ ..++++||++.|.+.. ..|++...+...- +..+..........|. ..++
T Consensus 4 ~V~~~~~~~~~~F~P~-----------~i~v~~G~~V~~~n~~~~~H~~~~~~~~~pg~~~~~~~~~~~~~~pG~~~~~t 72 (98)
T 1pcs_A 4 TVKMGSDSGALVFEPS-----------TVTIKAGEEVKWVNNKLSPHNIVFDADGVPADTAAKLSHKGLLFAAGESFTST 72 (98)
T ss_dssp EEEESCTTSCSSEESS-----------EEEECTTCEEEEEECSSCCEEEEECCSSSCHHHHHHHCEEEEECSTTCEEEEE
T ss_pred EEEEecCCCccEEeCC-----------EEEECCCCEEEEEECCCCCcEEEEeCCCCCccccccccccccccCCCCEEEEE
Confidence 4556643 46777552 4689999999999865 4799886532100 0000000011223343 4778
Q ss_pred ecccccEEEEcCCCCcccCCCeEEEEee
Q 029432 106 ITKEGNFYFTSGEPGHCQKKQKLHITVG 133 (193)
Q Consensus 106 L~~~G~~YFicg~~gHC~~GmKl~I~V~ 133 (193)
++++|+|+|+|. .||..||+..|.|.
T Consensus 73 f~~~G~y~~~C~--~H~~~gM~G~i~V~ 98 (98)
T 1pcs_A 73 FTEPGTYTYYCE--PHRGAGMVGKVVVE 98 (98)
T ss_dssp CCSCEEEEEECG--GGTTTTCEEEEEEC
T ss_pred cCCCeEEEEEcC--CccccCCeEEEEEC
Confidence 899999999999 89999999999984
No 23
>3c75_A Amicyanin; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.36 E-value=5.7e-07 Score=69.13 Aligned_cols=70 Identities=10% Similarity=0.116 Sum_probs=47.1
Q ss_pred CCeeeeCCEEEEEeCCC-CCeEEEEcccCCCCCCCCCCceeccCCc-eEEEecccccEEEEcCCCCcccCCCeEEEEee
Q 029432 57 YHTFAIGDSLLFLYPPS-QDSVIQVTAQSYDSCKLKDPILYMNNGN-SLFNITKEGNFYFTSGEPGHCQKKQKLHITVG 133 (193)
Q Consensus 57 ~~~F~vGD~LvF~y~~~-~hsV~~V~~~~Y~~C~~s~pi~~~~~G~-~~v~L~~~G~~YFicg~~gHC~~GmKl~I~V~ 133 (193)
..++++||++.|..... .|+|...+...= .=.... .....|. ..++++++|+|+|+|.. |. ||+..|.|.
T Consensus 61 ~i~V~~GdtV~~~N~d~~~H~v~~~~~~~g-~~~~~s--~~l~pG~t~~~tF~~~G~y~y~C~~--H~--gM~G~I~V~ 132 (132)
T 3c75_A 61 EVTIKAGETVYWVNGEVMPHNVAFKKGIVG-EDAFRG--EMMTKDQAYAITFNEAGSYDYFCTP--HP--FMRGKVIVE 132 (132)
T ss_dssp EEEECTTCEEEEEECSSSCBCCEECTTTSS-SSCEEC--CCBCTTEEEEEEECSCEEEEEECSS--CT--TCEEEEEEC
T ss_pred EEEECCCCEEEEEECCCCceEEEEeCCCCC-cccccc--cccCCCCEEEEEcCCCEEEEEEeCC--Cc--CCEEEEEEC
Confidence 46899999999997643 699887532210 000000 1123343 36788999999999996 76 999999884
No 24
>3cvb_A Plastocyanin; cupredoxin, SELF assembly, copper, electron transport, metal-binding, transport; 1.40A {Phormidium laminosum} PDB: 3cvc_A 3cvd_A 2w8c_A 2w88_A 2q5b_A 1baw_A 3bqv_A
Probab=98.16 E-value=7.6e-06 Score=58.92 Aligned_cols=88 Identities=15% Similarity=0.143 Sum_probs=57.9
Q ss_pred EEEecCC-CCCCCCCCCCcccccccccCCeeeeCCEEEEEeCC-CCCeEEEEcccCCCCCCC-------CCCceeccCCc
Q 029432 31 QYKVGDL-DGWGIPTSANPLVYAKWSKYHTFAIGDSLLFLYPP-SQDSVIQVTAQSYDSCKL-------KDPILYMNNGN 101 (193)
Q Consensus 31 ~~~VG~~-~GW~~~~~~~~~~Y~~WA~~~~F~vGD~LvF~y~~-~~hsV~~V~~~~Y~~C~~-------s~pi~~~~~G~ 101 (193)
+..+|.+ .+..+.++ ..+++.||+|.|.... ..|++..-... ..+.. .........|.
T Consensus 4 ~V~~~~~~~~~~f~p~-----------~i~v~~Gd~V~~~N~~~~~H~v~~~~~~--~~~~~g~~~~~~~~~~~~i~pG~ 70 (105)
T 3cvb_A 4 TVKMGADSGLFQFEPA-----------NVTVHPGDTVKWVNNKLPPHNILFDDKQ--VPGASKELADKLSHSQLMFSPGE 70 (105)
T ss_dssp EEEESCTTCCSCEESS-----------EEEECTTEEEEEEECSSCCEEEEECTTS--SGGGCHHHHHHHCEEEEECSTTC
T ss_pred EEEEeecCCccEEeCC-----------EEEEcCCCEEEEEECCCCCCeEEEeCCC--CCcccccccccccccccccCCCC
Confidence 4566653 56777653 4689999999998763 47888764211 11100 00011223343
Q ss_pred -eEEEe---cccccEEEEcCCCCcccCCCeEEEEee
Q 029432 102 -SLFNI---TKEGNFYFTSGEPGHCQKKQKLHITVG 133 (193)
Q Consensus 102 -~~v~L---~~~G~~YFicg~~gHC~~GmKl~I~V~ 133 (193)
..+++ +++|+|+|.|. .|+..||+..|.|.
T Consensus 71 ~~~~~f~~~~~~G~y~y~C~--~H~~~GM~G~i~V~ 104 (105)
T 3cvb_A 71 SYEITFSSDFPAGTYTYYCA--PHRGAGMVGKITVE 104 (105)
T ss_dssp EEEEEECTTSCSEEEEEECT--TTGGGTCEEEEEEC
T ss_pred eEEEEEecCCCCeeEEEEeC--CchhcCCEEEEEEc
Confidence 36777 78999999999 89999999999985
No 25
>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A
Probab=98.15 E-value=2.6e-06 Score=61.73 Aligned_cols=66 Identities=15% Similarity=0.144 Sum_probs=45.0
Q ss_pred CCeeeeCCEEEEEeCC---CCCeEEEEcccCCCCCCCCCCceeccCCc-e--EEEecccccEEEEcCCCCcccCCCeEEE
Q 029432 57 YHTFAIGDSLLFLYPP---SQDSVIQVTAQSYDSCKLKDPILYMNNGN-S--LFNITKEGNFYFTSGEPGHCQKKQKLHI 130 (193)
Q Consensus 57 ~~~F~vGD~LvF~y~~---~~hsV~~V~~~~Y~~C~~s~pi~~~~~G~-~--~v~L~~~G~~YFicg~~gHC~~GmKl~I 130 (193)
..++++||++.|.+.+ ..|++..-+ +. .......|. . .++.+++|.|.|+|. .||..||+-.|
T Consensus 29 ~i~v~~G~tV~~~~~n~d~~~H~~~~~~---~~------~~~~~~pg~~~~~~~t~~~~G~Y~y~C~--~H~~~gM~G~i 97 (100)
T 4hci_A 29 VITIPINESTTLLLKNKGKSEHTFTIKK---LG------IDVVVESGKEKNITVKPKSAGTYELICR--YHLLKGMEGKV 97 (100)
T ss_dssp EEEECTTSCEEEEEEECSSSCEEEEEGG---GT------EEEEECTTCEEEEEECCCSCEEEEEECT--TTGGGTCEEEE
T ss_pred EEEECCCCEEEEEEEcCCCceEEEEEec---CC------cceeecCCcceeEEEecccCceEEEECc--cccCCCCEEEE
Confidence 5799999999998753 236654311 11 011122333 2 455679999999996 69999999999
Q ss_pred Eee
Q 029432 131 TVG 133 (193)
Q Consensus 131 ~V~ 133 (193)
.|.
T Consensus 98 ~Ve 100 (100)
T 4hci_A 98 IVK 100 (100)
T ss_dssp EEC
T ss_pred EEC
Confidence 984
No 26
>3ay2_A Lipid modified azurin protein; beta sandwich, bacterial protein, anticancer, anti-HIV/AIDS, antiparasitic activity, antitumor protein; 1.90A {Neisseria gonorrhoeae}
Probab=98.13 E-value=8.9e-06 Score=65.55 Aligned_cols=92 Identities=13% Similarity=0.171 Sum_probs=59.5
Q ss_pred eEEEecCCCCCCCCCCCCcccccccccCCee-eeCCEEEEEeC--CC------CCeEEEEcccC---------------C
Q 029432 30 HQYKVGDLDGWGIPTSANPLVYAKWSKYHTF-AIGDSLLFLYP--PS------QDSVIQVTAQS---------------Y 85 (193)
Q Consensus 30 ~~~~VG~~~GW~~~~~~~~~~Y~~WA~~~~F-~vGD~LvF~y~--~~------~hsV~~V~~~~---------------Y 85 (193)
.+..|+..+++.+.++ ..++ +.||++.|.+. .. .|+++..+..+ |
T Consensus 43 ~~V~I~~~d~m~F~P~-----------~itV~kaG~~Vtv~~~N~g~~p~~~m~Hn~vi~~~~~~~~v~~~~m~~~~~~~ 111 (167)
T 3ay2_A 43 CAATVESNDNMQFNTK-----------DIQVSKACKEFTITLKHTGTQPKASMGHNLVIAKAEDMDGVFKDGVGAADTDY 111 (167)
T ss_dssp CEEEEEECTTSCBSCS-----------EEEEETTCSSEEEEEEECSCSCHHHHCBCCEEEEGGGHHHHHHHHGGGGGGTT
T ss_pred eEEEEEeCCCceEecc-----------eEEEecCCCEEEEEEEECCCCccccccceEEeccCcchhhhHHHhhhcccccc
Confidence 4667776667887653 4567 77997766664 22 29988765432 2
Q ss_pred CCCCCCCCc---eeccCCce-EEEec----ccccEEEEcCCCCcccCCCeEEEEee
Q 029432 86 DSCKLKDPI---LYMNNGNS-LFNIT----KEGNFYFTSGEPGHCQKKQKLHITVG 133 (193)
Q Consensus 86 ~~C~~s~pi---~~~~~G~~-~v~L~----~~G~~YFicg~~gHC~~GmKl~I~V~ 133 (193)
..=+..+.+ .....|.+ .++++ ++|+|+|+|.+++|=+ |||-.|+|.
T Consensus 112 v~~~d~~vl~~t~~l~pGet~svtf~~~~lkpG~Y~f~Ct~PgH~~-gM~G~i~V~ 166 (167)
T 3ay2_A 112 VKPDDARVVAHTKLIGGGEESSLTLDPAKLADGDYKFACTFPGHGA-LMNGKVTLV 166 (167)
T ss_dssp SCTTCTTEEEECCCBCTTCEEEEEECGGGGTTSCEEEECCSTTGGG-TSEEEEEEE
T ss_pred ccccccchhccceeeCCCCEEEEEEecCCCCCcEEEEEcCCCCchh-cCEEEEEEe
Confidence 111111111 12234443 56665 7999999999999999 999999986
No 27
>2ux6_A Pseudoazurin; type-1 copper, metal-binding, redox potential, copper, transport, cupredoxin, periplasmic, electron transport; 1.3A {Achromobacter cycloclastes} PDB: 2ux7_A 2uxf_A 2uxg_A 1bqk_A 1bqr_A 1zia_A 1zib_A 2jkw_A
Probab=98.12 E-value=4.8e-06 Score=63.39 Aligned_cols=69 Identities=16% Similarity=0.137 Sum_probs=49.8
Q ss_pred CCeeeeCCEEEEEeCCCCCeEEEEcccCCCCCCCCCCcee-ccCC-ceEEEecccccEEEEcCCCCcccCCCeEEEEeeC
Q 029432 57 YHTFAIGDSLLFLYPPSQDSVIQVTAQSYDSCKLKDPILY-MNNG-NSLFNITKEGNFYFTSGEPGHCQKKQKLHITVGN 134 (193)
Q Consensus 57 ~~~F~vGD~LvF~y~~~~hsV~~V~~~~Y~~C~~s~pi~~-~~~G-~~~v~L~~~G~~YFicg~~gHC~~GmKl~I~V~~ 134 (193)
..++++||+|.|......|+|...+. +-......+ ...| ..+++++++|.|+|+|.. |+. |+..|.|..
T Consensus 22 ~i~V~~GdtV~f~n~d~~H~v~~~~~-----~~p~~~~~~~~~~g~t~~~tF~~~G~y~y~C~~--H~~--M~G~I~V~~ 92 (122)
T 2ux6_A 22 SLKVAPGDTVTFIPTDKGHNVETIKG-----MIPDGAEAFKSKINENYKVTFTAPGVYGVKCTP--HPF--MVGVVQVGD 92 (122)
T ss_dssp EEEECTTEEEEEEESSSSCCCEECTT-----CSCTTCCCCBCCTTCCEEEEECSCEEEEEEETT--EEE--EEEEEEESS
T ss_pred EEEECCCCEEEEEECCCCcEEEEccc-----ccCCCcceeecCCCCEEEEEeCCCEEEEEEeCC--Ccc--CEEEEEEeC
Confidence 46899999999999877899987531 111111111 1123 347889999999999987 888 999999975
No 28
>1cuo_A Protein (azurin ISO-2); beta barrel, periplasmic, electron transport; 1.60A {Methylomonas SP} SCOP: b.6.1.1 PDB: 1uat_A
Probab=98.04 E-value=3.5e-05 Score=59.29 Aligned_cols=91 Identities=11% Similarity=0.142 Sum_probs=58.1
Q ss_pred EEEecCCCCCCCCCCCCcccccccccCCeeeeC-CEEEEEeCC-C-------CCeEEEEccc----------------CC
Q 029432 31 QYKVGDLDGWGIPTSANPLVYAKWSKYHTFAIG-DSLLFLYPP-S-------QDSVIQVTAQ----------------SY 85 (193)
Q Consensus 31 ~~~VG~~~GW~~~~~~~~~~Y~~WA~~~~F~vG-D~LvF~y~~-~-------~hsV~~V~~~----------------~Y 85 (193)
+..|+..+++.+.+. ..+++.| |.+.|.+.+ + .|+++..+.. +|
T Consensus 4 ~v~i~~~d~m~F~p~-----------~i~V~~G~~~vtv~~~N~g~~~~~~m~H~~vi~~~~~~~~~~~~~m~~~~~~~~ 72 (129)
T 1cuo_A 4 ETTVTSGDTMTYSTR-----------SISVPASCAEFTVNFEHKGHMPKTGMGHNWVLAKSADVGDVAKEGAHAGADNNF 72 (129)
T ss_dssp EEEEEECSSSCCSCS-----------EEEEETTCSEEEEEEEECSSSCHHHHCBCCEEEEGGGHHHHHHHHHTTCGGGTT
T ss_pred EEEEEeCCCceEccC-----------eEEEcCCCeEEEEEEEECCCCcccccccceEEecCcchhhhHHHhhhccccccc
Confidence 345554567887653 4689999 977776643 2 3999877543 23
Q ss_pred CCCCCCCCc---eeccCCce-EEEec-----ccccEEEEcCCCCcccCCCeEEEEee
Q 029432 86 DSCKLKDPI---LYMNNGNS-LFNIT-----KEGNFYFTSGEPGHCQKKQKLHITVG 133 (193)
Q Consensus 86 ~~C~~s~pi---~~~~~G~~-~v~L~-----~~G~~YFicg~~gHC~~GmKl~I~V~ 133 (193)
..=+..+-+ .....|.+ .++++ ++|+|+|+|.+++|=+ |||-.|.|.
T Consensus 73 v~~~~~~~~~~t~~l~pGet~svtf~~~~~~~~G~Y~f~C~~pgH~~-~M~G~i~V~ 128 (129)
T 1cuo_A 73 VTPGDKRVIAFTPIIGGGEKTSVKFKVSALSKDEAYTYFCSYPGHFS-MMRGTLKLE 128 (129)
T ss_dssp SCTTCTTCSEECCCBCTTCEEEEEEEGGGCCTTSCEEEECCSTTCTT-TSEEEEEEE
T ss_pred cccccccceeeeeEECCCCEEEEEEeccccCCCceEEEEeCCCCchH-cCEEEEEEe
Confidence 211111111 12234433 44443 8999999999999999 899999986
No 29
>2ov0_A Amicyanin; beta-sandwich, electron transport; 0.75A {Paracoccus denitrificans} SCOP: b.6.1.1 PDB: 1aaj_A 1aan_A 1aac_A 1mg2_C* 1mg3_C* 1t5k_A 2gc4_C* 2gc7_C* 2j55_A* 2j56_A* 2j57_A* 2mta_A* 1bxa_A 2rac_A 3l45_A 3ie9_A 3iea_A 2idq_A 2ids_A 1sf3_A ...
Probab=97.96 E-value=1.9e-05 Score=57.77 Aligned_cols=83 Identities=13% Similarity=0.112 Sum_probs=55.6
Q ss_pred eeeEEEecCCCCCCCCCCCCcccccccccCCeeeeCCEEEEEeCCC-CCeEEEEcccC----CCCCCCCCCceeccCCc-
Q 029432 28 FCHQYKVGDLDGWGIPTSANPLVYAKWSKYHTFAIGDSLLFLYPPS-QDSVIQVTAQS----YDSCKLKDPILYMNNGN- 101 (193)
Q Consensus 28 ~A~~~~VG~~~GW~~~~~~~~~~Y~~WA~~~~F~vGD~LvF~y~~~-~hsV~~V~~~~----Y~~C~~s~pi~~~~~G~- 101 (193)
.+.+|.|.- .+|.+.|. ..++++||+|.|..... .|+|...+..+ |+.. ....|.
T Consensus 17 ~a~~~~V~~-~~~~F~P~-----------~i~v~~Gd~V~~~N~d~~~H~v~~~~~~~g~~~~~~~-------~~~pG~~ 77 (105)
T 2ov0_A 17 ADGAIVVDI-AKMKYETP-----------ELHVKVGDTVTWINREAMPHNVHFVAGVLGEAALKGP-------MMKKEQA 77 (105)
T ss_dssp CTTCEEEEE-ETTEESSS-----------EEEECTTCEEEEEECSSSCBCCEECTTTSSSSCEECC-------CBCTTEE
T ss_pred CCcCEEEEE-eecEEcCC-----------EEEECCCCEEEEEECCCCCEEEEEcCCCCCccccccc-------ccCCCCE
Confidence 345566543 35777553 46899999999987644 79987643211 2211 122343
Q ss_pred eEEEecccccEEEEcCCCCcccCCCeEEEEee
Q 029432 102 SLFNITKEGNFYFTSGEPGHCQKKQKLHITVG 133 (193)
Q Consensus 102 ~~v~L~~~G~~YFicg~~gHC~~GmKl~I~V~ 133 (193)
..++++++|+|+|.|.. |. ||+..|.|.
T Consensus 78 ~~~tf~~~G~y~y~C~~--H~--gM~G~i~V~ 105 (105)
T 2ov0_A 78 YSLTFTEAGTYDYHCTP--HP--FMRGKVVVE 105 (105)
T ss_dssp EEEEECSCEEEEEECSS--CT--TCEEEEEEC
T ss_pred EEEEeCCCEEEEEEeCC--CC--CCEEEEEEC
Confidence 36788999999999987 54 999999884
No 30
>1id2_A Amicyanin; beta barrel, type-1 blue copper protein, electron transfer protein, electron transport; 2.15A {Paracoccus versutus} SCOP: b.6.1.1
Probab=97.84 E-value=3.9e-05 Score=56.33 Aligned_cols=66 Identities=11% Similarity=0.162 Sum_probs=46.9
Q ss_pred CCeeeeCCEEEEEeCCC-CCeEEEEcccC----CCCCCCCCCceeccCCc-eEEEecccccEEEEcCCCCcccCCCeEEE
Q 029432 57 YHTFAIGDSLLFLYPPS-QDSVIQVTAQS----YDSCKLKDPILYMNNGN-SLFNITKEGNFYFTSGEPGHCQKKQKLHI 130 (193)
Q Consensus 57 ~~~F~vGD~LvF~y~~~-~hsV~~V~~~~----Y~~C~~s~pi~~~~~G~-~~v~L~~~G~~YFicg~~gHC~~GmKl~I 130 (193)
..++++||+|.|..... .|+|...+... |++ .....|. ..++++++|.|.|+|.. |. ||+..|
T Consensus 35 ~i~V~~G~tV~~~N~d~~~H~v~~~~~~~~~~~~~s-------~~l~~g~~~~~tf~~~G~y~~~C~~--H~--~M~G~I 103 (106)
T 1id2_A 35 EVTIKAGETVYWVNGEVMPHNVAFKKGIVGEDAFRG-------EMMTKDQAYAITFNEAGSYDYFCTP--HP--FMRGKV 103 (106)
T ss_dssp EEEECTTCEEEEEECSSSCBCCEECTTTSSSSCEEC-------CCBCTTEEEEEEECSCEEEEEECSS--CT--TCEEEE
T ss_pred EEEECCCCEEEEEECCCCcEEEEEeCCCCCcccccc-------cccCCCCEEEEEeCCCEEEEEEeCC--CC--CCEEEE
Confidence 46899999999997643 69987643210 110 1123343 36788999999999997 77 999999
Q ss_pred Eee
Q 029432 131 TVG 133 (193)
Q Consensus 131 ~V~ 133 (193)
.|.
T Consensus 104 ~V~ 106 (106)
T 1id2_A 104 IVE 106 (106)
T ss_dssp EEC
T ss_pred EEC
Confidence 884
No 31
>2iaa_C Azurin; quinoprotein, tryptophan tryptophylquinone, cupredoxin, electron transfer, oxidoreductase/electron transport comple; HET: TRQ; 1.95A {Alcaligenes faecalis} PDB: 2h47_C* 2h3x_C*
Probab=97.80 E-value=0.00011 Score=56.41 Aligned_cols=90 Identities=18% Similarity=0.221 Sum_probs=55.3
Q ss_pred EEecCCCCCCCCCCCCcccccccccCCee-eeCCEEEEEeCC-C-------CCeEEEEccc----------------CCC
Q 029432 32 YKVGDLDGWGIPTSANPLVYAKWSKYHTF-AIGDSLLFLYPP-S-------QDSVIQVTAQ----------------SYD 86 (193)
Q Consensus 32 ~~VG~~~GW~~~~~~~~~~Y~~WA~~~~F-~vGD~LvF~y~~-~-------~hsV~~V~~~----------------~Y~ 86 (193)
..|+..+++.+.|. ..++ +.||++.|.+.+ + .|+++..+.+ +|.
T Consensus 4 v~v~~~d~m~F~p~-----------~i~V~k~G~~vtv~~~N~g~~p~~~m~Hn~vi~~~~~~~~~~~~~m~~~~~~~~~ 72 (128)
T 2iaa_C 4 VSIEGNDSMQFNTK-----------SIVVDKTCKEFTINLKHTGKLPKAAMGHNVVVSKKSDESAVATDGMKAGLNNDYV 72 (128)
T ss_dssp EEEEECTTSCBSCS-----------EEEECTTCSEEEEEEEECSCSCHHHHCBCCEEEETTHHHHHHHHHHHHCGGGTTS
T ss_pred EEEEeCCCceEecC-----------EEEEecCCcEEEEEEEECCCCcccCCCceEEEccccchhhHHHhhhhcccccccc
Confidence 44555567887652 3455 669977666643 2 3998876533 332
Q ss_pred CCCCCCCc---eeccCCce-EEEec----ccc-cEEEEcCCCCcccCCCeEEEEee
Q 029432 87 SCKLKDPI---LYMNNGNS-LFNIT----KEG-NFYFTSGEPGHCQKKQKLHITVG 133 (193)
Q Consensus 87 ~C~~s~pi---~~~~~G~~-~v~L~----~~G-~~YFicg~~gHC~~GmKl~I~V~ 133 (193)
.=+-.+-+ .....|.+ .++++ ++| +|.|+|.+++|=+ |||-.|+|.
T Consensus 73 ~~~~~~~~~~t~~l~pGes~~vtf~~~~l~~G~~Y~f~C~~PgH~~-gM~G~i~V~ 127 (128)
T 2iaa_C 73 KAGDERVIAHTSVIGGGETDSVTFDVSKLKEGEDYAFFCSFPGHWS-IMKGTIELG 127 (128)
T ss_dssp CTTCTTEEEECCCBCTTCEEEEEEESSCCCTTCCEEEECCSTTCTT-TSEEEEEEC
T ss_pred ccccchhhccceeeCCCCEEEEEEeccccCCCceEEEEECCCChhH-CCEEEEEEe
Confidence 11111111 12234433 45554 678 4999999999999 999999985
No 32
>1nwp_A Azurin; electron transport, cupredoxin, electron transfer; 1.60A {Pseudomonas putida} SCOP: b.6.1.1 PDB: 1nwo_A 1joi_A
Probab=97.78 E-value=0.0001 Score=56.64 Aligned_cols=91 Identities=15% Similarity=0.151 Sum_probs=56.4
Q ss_pred EEEecCCCCCCCCCCCCcccccccccCCee-eeCCEEEEEeCC--C------CCeEEEEcccC----------------C
Q 029432 31 QYKVGDLDGWGIPTSANPLVYAKWSKYHTF-AIGDSLLFLYPP--S------QDSVIQVTAQS----------------Y 85 (193)
Q Consensus 31 ~~~VG~~~GW~~~~~~~~~~Y~~WA~~~~F-~vGD~LvF~y~~--~------~hsV~~V~~~~----------------Y 85 (193)
+..|+..+++.+.|+ ..++ +.||++.|.+.+ . .|+++..+.++ |
T Consensus 4 ~v~v~~~d~m~F~p~-----------~i~V~k~G~~vtv~~~N~g~~p~~~m~H~~vi~~~~~~~~~~~~~m~~~~~~~~ 72 (128)
T 1nwp_A 4 KVTVDSTDQMSFNTK-----------DIAIDKSCKTFTVELTHSGSLPKNVMGHNLVISKEADMQPIATDGLSAGIDKQY 72 (128)
T ss_dssp EEEEEECTTSCBSCS-----------EEEECTTCSEEEEEEEECSSCCHHHHCBCCEEEEGGGHHHHHHHHTTTCGGGTT
T ss_pred EEEEEeCCCccEecC-----------EEEEecCCCEEEEEEEECCCCcccCCCceEEEccccchhhHHHHHhhccccccc
Confidence 455655567888653 4567 789987776643 2 39988765332 2
Q ss_pred CCCCCCCCc---eeccCCc-eEEEec----cccc-EEEEcCCCCcccCCCeEEEEee
Q 029432 86 DSCKLKDPI---LYMNNGN-SLFNIT----KEGN-FYFTSGEPGHCQKKQKLHITVG 133 (193)
Q Consensus 86 ~~C~~s~pi---~~~~~G~-~~v~L~----~~G~-~YFicg~~gHC~~GmKl~I~V~ 133 (193)
..=+..+-+ .....|. ..++++ ++|. |.|+|.+++|=+ |||-.|+|.
T Consensus 73 ~~~~~~~~~~~t~~l~pGet~svtf~~~~l~~G~~Y~f~C~~PgH~~-gM~G~i~V~ 128 (128)
T 1nwp_A 73 LKDGDARVIAHTKVIGAGEKDSVTFDVSKLAAGEKYGFFCSFPGHIS-MMKGTVTLK 128 (128)
T ss_dssp SCTTCTTEEEECCCBCTTCEEEEEEEGGGSCTTSCEEEECCSTTCGG-GSEEEEEEC
T ss_pred cccccchhheeeeeeCCCCEEEEEEeccccCCCceEEEEECCCChhH-CCEEEEEEC
Confidence 111111111 1234444 355554 5676 999999999999 999999883
No 33
>1iko_P Ephrin-B2; greek KEY, glycosylation, signaling protein; HET: NAG MAN; 1.92A {Mus musculus} SCOP: b.6.1.5
Probab=97.72 E-value=1.5e-05 Score=65.01 Aligned_cols=80 Identities=24% Similarity=0.409 Sum_probs=54.0
Q ss_pred eeeeCCEEEEE---eCC------CCCeEEEEcccCCCCCCCCC-Cceec--c--CCceEEEec-------------ccc-
Q 029432 59 TFAIGDSLLFL---YPP------SQDSVIQVTAQSYDSCKLKD-PILYM--N--NGNSLFNIT-------------KEG- 110 (193)
Q Consensus 59 ~F~vGD~LvF~---y~~------~~hsV~~V~~~~Y~~C~~s~-pi~~~--~--~G~~~v~L~-------------~~G- 110 (193)
..++||.|-+- |.. ..+.+++|++++|+.|+... +...+ + .+..+|++. ++|
T Consensus 25 ~v~igD~LdIiCP~~~~~~~~~~E~~~LY~Vs~~~y~~C~~~~~~~~l~~C~~P~~~~kftikFq~fsP~p~GlEF~pg~ 104 (178)
T 1iko_P 25 YPQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKENTPLLNCARPDQDVKFTIKFQEFSPNLWGLEFQKNK 104 (178)
T ss_dssp CCCTTCEEEEECCCCCSSSCSCCCBEEEEEECHHHHHHTBCCTTCCCSEEECCTTSCCEEEEECCSSCSSTTCCCCCTTE
T ss_pred EecCCCEEEEECCCCCCCCCCCceEEEEEEECHHHhhhcccCCCCcEEEEecCCCCCEEEEEEEEecCCCCCcccccCCC
Confidence 34669999886 322 23788999999999999863 22222 2 233444432 466
Q ss_pred cEEEEcCCC-----------CcccC-CCeEEEEeeCCCCC
Q 029432 111 NFYFTSGEP-----------GHCQK-KQKLHITVGNVSAE 138 (193)
Q Consensus 111 ~~YFicg~~-----------gHC~~-GmKl~I~V~~~~~~ 138 (193)
+|||||.-. |+|.. +|||.|.|......
T Consensus 105 ~YY~IstS~G~~~gl~~~~gG~C~t~~Mkl~ikV~~~~~~ 144 (178)
T 1iko_P 105 DYYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVGQDASS 144 (178)
T ss_dssp EEEEECCCCBSGGGTTCCBSHHHHHSCCEEEEEETCC---
T ss_pred ceEEEecCCcccccccccCCCccccceeEEEEEeecCCCC
Confidence 699999864 79988 99999999776543
No 34
>2ccw_A Azurin II, AZN-2; electron transport (cuproprotein), alcaligenes xylosoxidans, electron transfer, cupredoxin, electron transport; 1.13A {Alcaligenes xylosoxydans} SCOP: b.6.1.1 PDB: 1dz0_A 1dyz_A 1aiz_A 1azb_A 1azc_A 1uri_A 2aza_A 1a4a_A 1a4b_A 1a4c_A
Probab=97.72 E-value=0.00013 Score=56.11 Aligned_cols=91 Identities=13% Similarity=0.160 Sum_probs=55.0
Q ss_pred EEEecCCCCCCCCCCCCcccccccccCCee-eeCCEEEEEeCC--C------CCeEEEEccc----------------CC
Q 029432 31 QYKVGDLDGWGIPTSANPLVYAKWSKYHTF-AIGDSLLFLYPP--S------QDSVIQVTAQ----------------SY 85 (193)
Q Consensus 31 ~~~VG~~~GW~~~~~~~~~~Y~~WA~~~~F-~vGD~LvF~y~~--~------~hsV~~V~~~----------------~Y 85 (193)
+..|+..++..+.+. ..++ +.||++.|.+.+ . .|+++..+.. +|
T Consensus 4 ~v~v~~~d~m~F~p~-----------~i~V~k~G~~vtv~~~N~g~~p~~~m~H~~vi~~~~~~~~~~~~~~~~~~~~~~ 72 (129)
T 2ccw_A 4 EATVESNDAMQYNVK-----------EIVVDKSCKQFTMHLKHVGKMAKVAMGHNLVLTKDADKQAVATDGMGAGLAQDY 72 (129)
T ss_dssp EEEEEECTTSCBSCS-----------EEEECTTCSEEEEEEEECSCCCHHHHCBCCEEEEGGGHHHHHHHHHHHCGGGTT
T ss_pred EEEEEeCCCccEecc-----------eEEEecCCCEEEEEEEECCCcccccCcceEEEcCccchhhhHHHhhhhcccccc
Confidence 455555567777652 2355 559976666643 2 3999877543 33
Q ss_pred CCCCCCCCc---eeccCCce-EEEec----cccc-EEEEcCCCCcccCCCeEEEEee
Q 029432 86 DSCKLKDPI---LYMNNGNS-LFNIT----KEGN-FYFTSGEPGHCQKKQKLHITVG 133 (193)
Q Consensus 86 ~~C~~s~pi---~~~~~G~~-~v~L~----~~G~-~YFicg~~gHC~~GmKl~I~V~ 133 (193)
..=+-.+-+ .....|.+ .++++ ++|. |+|+|.+++|=+ |||-.|+|.
T Consensus 73 ~~~~~~~~~~~t~~l~pGet~svtf~~~~l~~G~~Y~f~C~~pgH~~-gM~G~i~V~ 128 (129)
T 2ccw_A 73 VKAGDTRVIAHTKVIGGGESDSVTFDVSKIAAGENYAYFCSFPGHWA-MMKGTLKLG 128 (129)
T ss_dssp SCTTCTTEEEECCCBCTTCEEEEEEEGGGSCTTCCEEEECCSTTGGG-TSEEEEEEC
T ss_pred cccccccceeeeeEECCCCEEEEEEeccccCCCceEEEEeCCCChhH-cCEEEEEEe
Confidence 211111111 12234433 45544 5665 999999999999 999999985
No 35
>3czu_B Ephrin-A1; ATP-binding, kinase, nucleotide-binding, receptor, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG MAN; 2.65A {Homo sapiens} PDB: 3mbw_B*
Probab=97.62 E-value=0.00013 Score=59.56 Aligned_cols=101 Identities=20% Similarity=0.359 Sum_probs=58.6
Q ss_pred ceeeEEEecCCCCCCCCCCCCcccccccccCCeeeeCCEEEEE---eCC--------CCCeEEEEcccCCCCCCCCC-Cc
Q 029432 27 SFCHQYKVGDLDGWGIPTSANPLVYAKWSKYHTFAIGDSLLFL---YPP--------SQDSVIQVTAQSYDSCKLKD-PI 94 (193)
Q Consensus 27 a~A~~~~VG~~~GW~~~~~~~~~~Y~~WA~~~~F~vGD~LvF~---y~~--------~~hsV~~V~~~~Y~~C~~s~-pi 94 (193)
+++..+.| -|... |+..... --....++||.|-+- |.. ....+..|++++|++|+... +.
T Consensus 27 ~sa~rh~V----yWNSs---Np~F~~~-~y~i~V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~Vs~e~y~sC~~~~~~~ 98 (182)
T 3czu_B 27 DAADRHTV----FWNSS---NPKFRNE-DYTIHVQLNDYVDIICPHYEDHSVADAAMEQYILYLVEHEEYQLCQPQSKDQ 98 (182)
T ss_dssp --CCEEEE----ECSTT---CGGGTTS-CCEEEECTTCEEEEECCCCC--CCCGGGSCCEEEEEECHHHHHHTCCCCGGG
T ss_pred hhccccce----EEcCC---CccccCC-CceEEeccCCEEEEECCCCCCCCCCCCCceEEEEEEECHHHhhhccCCCCCc
Confidence 44556655 38753 3332221 223578999999876 332 13567899999999999764 33
Q ss_pred eecc-------CCceEEEec-------------ccc-cEEEEcC----CCCcccCCCeEEEEeeCCCCC
Q 029432 95 LYMN-------NGNSLFNIT-------------KEG-NFYFTSG----EPGHCQKKQKLHITVGNVSAE 138 (193)
Q Consensus 95 ~~~~-------~G~~~v~L~-------------~~G-~~YFicg----~~gHC~~GmKl~I~V~~~~~~ 138 (193)
..+. .|..+|++. ++| .||||+. .+|.| |||.|.|......
T Consensus 99 ~~~~C~~P~~~~~p~kftikFQ~FSP~p~GlEF~pG~dYY~ISts~~~~gg~C---mrL~v~V~~k~~~ 164 (182)
T 3czu_B 99 VRWQCNRPSAKHGPEKLSEKFQRFTPFTLGKEFKEGHSYYYISKPIHQHEDRC---LRLKVTVSGKITH 164 (182)
T ss_dssp EEEEECCTTCTTSCCEEEEECCSCCSCTTSCCCCTTCEEEEEEEESSSCCCSC---CEEEEEECC----
T ss_pred EEEEeCCCCCCCCCcEEEEEEEEcCCCCCCeeEeCCCeEEEEEccCCCCCCcc---eEEEEEEecCCCC
Confidence 3221 233334321 567 4899986 35667 9999999866543
No 36
>2x11_B Ephrin-A5; receptor-signaling protein complex, developmental protein, signaling platform, kinase, transferase, neurogenesis, receptor, cataract; 4.83A {Homo sapiens}
Probab=97.54 E-value=0.0002 Score=58.25 Aligned_cols=77 Identities=21% Similarity=0.364 Sum_probs=51.1
Q ss_pred CeeeeCCEEEEE---eCC-------CCCeEEEEcccCCCCCCCCCCc-eecc-------CCceEEEec------------
Q 029432 58 HTFAIGDSLLFL---YPP-------SQDSVIQVTAQSYDSCKLKDPI-LYMN-------NGNSLFNIT------------ 107 (193)
Q Consensus 58 ~~F~vGD~LvF~---y~~-------~~hsV~~V~~~~Y~~C~~s~pi-~~~~-------~G~~~v~L~------------ 107 (193)
...++||.|-+- |.. .+..+..|++++|++|+..... ..+. .|+.+|++.
T Consensus 52 i~V~i~D~LDIiCP~y~~~~~~~~~E~y~LY~Vs~e~y~~C~~~~~~~~~~~C~~P~~p~~~~kftikFQ~FSP~p~G~E 131 (177)
T 2x11_B 52 IDVCINDYLDVFCPHYEDSVPEDKTERYVLYMVNFDGYSACDHTSKGFKRWECNRPHSPNGPLKFSEKFQLFTPFSLGFE 131 (177)
T ss_dssp EEECTTCEEEEECCCCCSSSCSSSCCCEEEEEECHHHHHHTCCTTTEEEEEEECCTTCSSSSCEEEEECCSSCSSTTCCC
T ss_pred EEecCCCEEEEECCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCcEEEEeCCCCCCCCCeEEEEEEEEcCCCCCCcc
Confidence 468899999876 331 2456789999999999986532 2221 134444321
Q ss_pred -ccc-cEEEEcCC-----CCcccCCCeEEEEeeCCCC
Q 029432 108 -KEG-NFYFTSGE-----PGHCQKKQKLHITVGNVSA 137 (193)
Q Consensus 108 -~~G-~~YFicg~-----~gHC~~GmKl~I~V~~~~~ 137 (193)
++| +||||++- ++-| |||.|.|.....
T Consensus 132 F~pG~~YYyISTS~~~~~g~~C---lrLkV~V~p~~~ 165 (177)
T 2x11_B 132 FRPGREYFYISSAIPDNGRRSC---LKLKVFVRPTNS 165 (177)
T ss_dssp CCTTEEEEEEEEESSCCCSSSC---CEEEEEECCTTT
T ss_pred ccCCCeEEEEecCCCCCCCCcc---eEEEEEEEcCCC
Confidence 567 48999753 2346 999999987654
No 37
>3d12_B Ephrin-B3; beta propeller, protein-receptor complex, envelope protein, glycoprotein, hemagglutinin, hydrolase, membrane, signal-AN transmembrane; HET: NAG BMA MAN BGC LXZ NGA GL0 GLC LXB NGZ GXL; 3.00A {Mus musculus}
Probab=97.28 E-value=0.00032 Score=55.13 Aligned_cols=76 Identities=24% Similarity=0.375 Sum_probs=51.6
Q ss_pred CeeeeCCEEEEE---eCC---------CCCeEEEEcccCCCCCCCC-CCceecc----CCceEEEec-------------
Q 029432 58 HTFAIGDSLLFL---YPP---------SQDSVIQVTAQSYDSCKLK-DPILYMN----NGNSLFNIT------------- 107 (193)
Q Consensus 58 ~~F~vGD~LvF~---y~~---------~~hsV~~V~~~~Y~~C~~s-~pi~~~~----~G~~~v~L~------------- 107 (193)
...++||.|-+- |.. ....+..|++++|++|+.. ++...+. .+..+|++.
T Consensus 22 i~V~i~D~ldIiCP~~~~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~~~~C~~P~~~~kft~kFq~fsP~p~G~EF 101 (141)
T 3d12_B 22 LYPQIGDRLDLLCPRARPPGPHSSPSYEFYKLYLVEGAQGRRCEAPPAPNLLLTCDRPDLDLRFTIKFQEYSPNLWGHEF 101 (141)
T ss_dssp ECCCTTCEEEEEECCCSSCCTTCCSSCCCCEEEEECSHHHHTTBCCSSCEEEEECCCSSSCEEEEEESSSCCSCCSCCCC
T ss_pred EEecCCCEEEEECCCCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCeEEEEeCCCCCCeEEEEEEEEcCCCCCceee
Confidence 367889999876 332 3456888999999999986 3433321 233333311
Q ss_pred ccc-cEEEEcCC-----------CCcccC-CCeEEEEee
Q 029432 108 KEG-NFYFTSGE-----------PGHCQK-KQKLHITVG 133 (193)
Q Consensus 108 ~~G-~~YFicg~-----------~gHC~~-GmKl~I~V~ 133 (193)
++| .||||+.- +|-|.. .|||.|.|.
T Consensus 102 ~pG~~YY~ISts~G~~~gl~~~~gG~C~t~~Mkl~i~V~ 140 (141)
T 3d12_B 102 RSHHDYYIIATSDGTREGLESLQGGVCLTRGMKVLLRVG 140 (141)
T ss_dssp CTTCEEEEEECSCSSTTTTTCCBCSHHHHTCCEEEEECC
T ss_pred eCCCeEEEEecCCCCcccccccCCCccccceEEEEEEec
Confidence 566 59999873 357887 899999986
No 38
>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4 PDB: 1ibz_A 1ic0_A
Probab=96.99 E-value=0.00098 Score=48.69 Aligned_cols=66 Identities=12% Similarity=0.127 Sum_probs=43.2
Q ss_pred CCeeeeCCEEEEEeCCC---CCeEEEEcccCCCCCCCCCCceeccCCce-EEEe--cccccEEEEcCCCCcccC-CCeEE
Q 029432 57 YHTFAIGDSLLFLYPPS---QDSVIQVTAQSYDSCKLKDPILYMNNGNS-LFNI--TKEGNFYFTSGEPGHCQK-KQKLH 129 (193)
Q Consensus 57 ~~~F~vGD~LvF~y~~~---~hsV~~V~~~~Y~~C~~s~pi~~~~~G~~-~v~L--~~~G~~YFicg~~gHC~~-GmKl~ 129 (193)
..+++.||.+.|.+.+. .|++..-+ +. .......|.+ .+++ +++|.|+|.|.. ||.. +|+..
T Consensus 39 ~i~v~~G~~V~~~~~n~d~~~H~~~i~~---~~------~~~~i~pG~~~~~~f~~~~~G~y~~~C~~--~~~~~~M~g~ 107 (112)
T 1iby_A 39 TLVVKKGDAVKVVVENKSPISEGFSIDA---FG------VQEVIKAGETKTISFTADKAGAFTIWCQL--HPKNIHLPGT 107 (112)
T ss_dssp EEEEETTCEEEEEEEECSSSCEEEEEGG---GT------EEEEECTTCEEEEEEECCSCEEEEEBCSS--SCTTTBCCEE
T ss_pred EEEEeCCCEEEEEEEECCCCeEEEEEcC---CC------ceeEeCCCCEEEEEEECCCCEEEEEECCC--CCchHHCEEE
Confidence 46899999999987532 57765322 11 1112334433 4444 899999999987 6643 49999
Q ss_pred EEee
Q 029432 130 ITVG 133 (193)
Q Consensus 130 I~V~ 133 (193)
|.|.
T Consensus 108 i~V~ 111 (112)
T 1iby_A 108 LNVV 111 (112)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9886
No 39
>2vsm_B Ephrin-B2; developmental protein, henipavirus, neurogenesis, glycoprotein, paramyxovirus, envelope protein, cell surface receptor, hendra, virion; HET: NAG; 1.80A {Homo sapiens} PDB: 2wo2_B* 2i85_A 3gxu_B 2vsk_B 2hle_B 1kgy_E
Probab=96.90 E-value=0.00068 Score=53.17 Aligned_cols=76 Identities=26% Similarity=0.463 Sum_probs=51.1
Q ss_pred eeeeCCEEEEEeCC---------CCCeEEEEcccCCCCCCCCC-Cceec----cCCceEEEec-------------ccc-
Q 029432 59 TFAIGDSLLFLYPP---------SQDSVIQVTAQSYDSCKLKD-PILYM----NNGNSLFNIT-------------KEG- 110 (193)
Q Consensus 59 ~F~vGD~LvF~y~~---------~~hsV~~V~~~~Y~~C~~s~-pi~~~----~~G~~~v~L~-------------~~G- 110 (193)
..++||.|.+-=+. ....+..|++++|+.|+... +...+ ..+..++++. ++|
T Consensus 24 ~v~i~D~ldIiCP~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~~~~C~~P~~~~kft~kFq~fsP~~~G~eF~~g~ 103 (140)
T 2vsm_B 24 YPQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKENTPLLNCAKPDQDIKFTIKFQEFSPNLWGLEFQKNK 103 (140)
T ss_dssp CCCTTCEEEEEECCCC---CCCCCBEEEEEECHHHHHHTBCCTTCCCSEEECCTTSCEEEEEESSSCCSCSSCCCCCTTE
T ss_pred EecCCCEEEEECCCCCCCCCCCceEEEEEEECHHHhhhcccCCCCcEEEEecCCCCCEEEEEEEEecCCCCCcccccCCC
Confidence 44679999886332 14577889999999999863 32222 1334444332 566
Q ss_pred cEEEEcCCC-----------CcccC-CCeEEEEeeC
Q 029432 111 NFYFTSGEP-----------GHCQK-KQKLHITVGN 134 (193)
Q Consensus 111 ~~YFicg~~-----------gHC~~-GmKl~I~V~~ 134 (193)
+||||+.-. |-|.. .|||.|.|..
T Consensus 104 ~YY~Ists~g~~~gl~~~~gG~C~t~~mkl~i~V~~ 139 (140)
T 2vsm_B 104 DYYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVGH 139 (140)
T ss_dssp EEEEECCCCBSGGGTTCCBSHHHHHSCCEEEEEETC
T ss_pred ceEEEecCCCCccccccccCCccccceEEEEEEecC
Confidence 489998743 47887 8999999964
No 40
>1shx_A Ephrin-A5; ephrin signaling, hormone-growth factor complex; HET: NAG; 2.10A {Mus musculus} SCOP: b.6.1.5 PDB: 1shw_A* 3mx0_B*
Probab=96.88 E-value=0.0023 Score=50.08 Aligned_cols=76 Identities=21% Similarity=0.364 Sum_probs=50.2
Q ss_pred CeeeeCCEEEEE---eCC-------CCCeEEEEcccCCCCCCCCCCc-eecc-------CCceEEEec------------
Q 029432 58 HTFAIGDSLLFL---YPP-------SQDSVIQVTAQSYDSCKLKDPI-LYMN-------NGNSLFNIT------------ 107 (193)
Q Consensus 58 ~~F~vGD~LvF~---y~~-------~~hsV~~V~~~~Y~~C~~s~pi-~~~~-------~G~~~v~L~------------ 107 (193)
...++||.|-+- |.. ....+..|++++|++|+..... ..+. .+..+|++.
T Consensus 23 i~V~i~D~lDIiCP~~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~~~~C~~P~~p~~~~kftikFq~fsP~p~G~E 102 (138)
T 1shx_A 23 IDVCINDYLDVFCPHYEDSVPEDKTERYVLYMVNFDGYSACDHTSKGFKRWECNRPHSPNGPLKFSEKFQLFTPFSLGFE 102 (138)
T ss_dssp EEECTTCEEEEECCCCCTTCCSTTCCCEEEEEECHHHHHTTCSSSSEEEEEEECCTTCTTSSCEEEEECCSCCSSTTCCC
T ss_pred EEecCCCEEEEECCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCCEEEEeCCCCCCCCCeEEEEEEEEcCCCCCcee
Confidence 467889999875 331 2456779999999999986532 2221 144444321
Q ss_pred -ccc-cEEEEcCC-----CCcccCCCeEEEEeeCCC
Q 029432 108 -KEG-NFYFTSGE-----PGHCQKKQKLHITVGNVS 136 (193)
Q Consensus 108 -~~G-~~YFicg~-----~gHC~~GmKl~I~V~~~~ 136 (193)
++| +||||++- ++-| |||.|.|....
T Consensus 103 F~pG~~YY~ISts~~~~~g~~C---lrL~V~V~p~~ 135 (138)
T 1shx_A 103 FRPGREYFYISSAIPDNGRRSC---LKLKVFVRPTN 135 (138)
T ss_dssp CCTTEEEEEEEEESSCCSCSCC---CEEEEEECCTT
T ss_pred ecCCCeEEEEEcCCCCCCCCce---eEEEEEEEccc
Confidence 467 48999753 3457 99999998643
No 41
>2cua_A Protein (CUA); CUA center, electron transport; 1.60A {Thermus thermophilus} SCOP: b.6.1.2 PDB: 2fwl_B*
Probab=95.93 E-value=0.02 Score=43.93 Aligned_cols=66 Identities=12% Similarity=0.169 Sum_probs=44.2
Q ss_pred CCeeeeCCEEEEEeCCC--CCeEEEEcccCCCCCCCCCCceeccCCc---eEEEecccccEEEEcCC---CCcccCCCeE
Q 029432 57 YHTFAIGDSLLFLYPPS--QDSVIQVTAQSYDSCKLKDPILYMNNGN---SLFNITKEGNFYFTSGE---PGHCQKKQKL 128 (193)
Q Consensus 57 ~~~F~vGD~LvF~y~~~--~hsV~~V~~~~Y~~C~~s~pi~~~~~G~---~~v~L~~~G~~YFicg~---~gHC~~GmKl 128 (193)
..++.+||.+.|...+. .|++.. . ++. -......|. -.++++++|.|+|.|.. .+| .+|+.
T Consensus 61 ~l~Vp~G~~V~~~vts~DV~Hsf~i-p--~~~------~k~d~~PG~~~~~~~~~~~~G~y~~~C~e~CG~~H--~~M~g 129 (135)
T 2cua_A 61 PIEVPQGAEIVFKITSPDVIHGFHV-E--GTN------INVEVLPGEVSTVRYTFKRPGEYRIICNQYCGLGH--QNMFG 129 (135)
T ss_dssp SEEEETTSEEEEEEEBSSSCEEEEE-T--TSS------CEEEECBTBCEEEEEECCSCEEEEEECCSCCSTTS--TTCEE
T ss_pred EEEEcCCCEEEEEEEeCCccceEEe-c--CCC------ceeEeCCCCcEEEEEEcCCCEEEEEECcccCCCCc--CCCEE
Confidence 56899999999998642 355442 1 111 011122342 36788999999999986 445 68999
Q ss_pred EEEee
Q 029432 129 HITVG 133 (193)
Q Consensus 129 ~I~V~ 133 (193)
.|.|.
T Consensus 130 ~v~V~ 134 (135)
T 2cua_A 130 TIVVK 134 (135)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99986
No 42
>2wo3_B Ephrin-A2; transferase-signaling protein complex, EFN, EPHA4, KINA ephrin, complex, membrane, cell surface receptor, tyrosine- kinase, glycoprotein; HET: NAG; 2.35A {Homo sapiens}
Probab=95.85 E-value=0.017 Score=46.05 Aligned_cols=76 Identities=20% Similarity=0.336 Sum_probs=48.0
Q ss_pred CeeeeCCEEEEE---eCC--------CCCeEEEEcccCCCCCCCCCCc-eecc-------CCceEEEec-----------
Q 029432 58 HTFAIGDSLLFL---YPP--------SQDSVIQVTAQSYDSCKLKDPI-LYMN-------NGNSLFNIT----------- 107 (193)
Q Consensus 58 ~~F~vGD~LvF~---y~~--------~~hsV~~V~~~~Y~~C~~s~pi-~~~~-------~G~~~v~L~----------- 107 (193)
..+++||.|-+- |.. ....+..|++++|++|+..... ..+. .+..+|++.
T Consensus 32 i~V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~Vs~~~y~~C~~~~~~~~~~~C~~P~~p~~~~kftikFQ~fSP~p~G~ 111 (157)
T 2wo3_B 32 VEVSINDYLDIYCPHYGAPLPPAERMEHYVLYMVNGEGHASCDHRQRGFKRWECNRPAAPGGPLKFSEKFQLFTPFSLGF 111 (157)
T ss_dssp EEECTTCEEEEECCCCCSSCCCGGGSCCEEEEEECHHHHHHTCCTTSEEEEEEECCTTCTTSSCEEEEECCSSCSSTTSC
T ss_pred EEeccCCEEEEECCCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCCEEEEeCCCCCCCCCeEEEEEEEECCCCCCCe
Confidence 468889999886 321 1234789999999999986532 2221 133334311
Q ss_pred --ccc-cEEEEcCC-----CCcccCCCeEEEEeeCCC
Q 029432 108 --KEG-NFYFTSGE-----PGHCQKKQKLHITVGNVS 136 (193)
Q Consensus 108 --~~G-~~YFicg~-----~gHC~~GmKl~I~V~~~~ 136 (193)
++| .||||+.- +|-| |||.|.|....
T Consensus 112 EF~pG~~YY~ISTS~g~~~gg~C---~rlkV~V~~~~ 145 (157)
T 2wo3_B 112 EFRPGHEYYYISATPPNAVDRPC---LRLKVYVRPTQ 145 (157)
T ss_dssp CCCTTCEEEEEEECTTCSCCTTC---CEEEEEECCCC
T ss_pred eeeCCCeEEEEEecCCCCCCCcc---eeEEEEEEcCC
Confidence 566 49999864 3456 57888877554
No 43
>3fsa_A Azurin; copper, cupredoxin fold, metal-binding, protein-protein interaction, metal binding protein; 0.98A {Pseudomonas aeruginosa} SCOP: b.6.1.1 PDB: 2xv2_A 2xv0_A 3fs9_A 2fta_A* 2hx7_A 2hx8_A 2hx9_A 2hxa_A 1cc3_A 2ft6_A 2ft7_A 2ft8_A 1azn_A 3n2j_A 2iwe_A 2ghz_A 2gi0_A 1jzg_A* 1azu_A* 1bex_A ...
Probab=95.03 E-value=0.23 Score=37.98 Aligned_cols=87 Identities=14% Similarity=0.109 Sum_probs=50.4
Q ss_pred EEecCCCCCCCCCCCCcccccccccCCeeee-CCEEEEEeCC-C-------CCeEEEEccc----------------CCC
Q 029432 32 YKVGDLDGWGIPTSANPLVYAKWSKYHTFAI-GDSLLFLYPP-S-------QDSVIQVTAQ----------------SYD 86 (193)
Q Consensus 32 ~~VG~~~GW~~~~~~~~~~Y~~WA~~~~F~v-GD~LvF~y~~-~-------~hsV~~V~~~----------------~Y~ 86 (193)
..|-.+++..+.++ ..++.. |+++.|.+.. + .|+++..+.+ +|-
T Consensus 5 v~i~~~d~M~F~p~-----------~i~V~~~Ge~V~~~l~N~G~~p~~~M~Hn~Vl~~~~~~~~~~~~~m~~~~~~~y~ 73 (125)
T 3fsa_A 5 VDIQGNDQMQFNTN-----------AITVDKSCKQFTVNLSHPGNLPKNVMGHNWVLSTAADMQGVVTDGMASGLDKDYL 73 (125)
T ss_dssp EEEEBCTTSCBSCS-----------EEEECTTCSEEEEEEECCSSCCHHHHCBCCEEEEHHHHHHHHHHHHHHCGGGTTS
T ss_pred EEEEccCCcEEecC-----------EEEEecCCCEEEEEEEECCcccccccCceEEEcccchHHHHHHHHHhcChhhccC
Confidence 34444456777542 345543 9999777753 4 3999886322 332
Q ss_pred CCCCCCCc---eeccCCce-EEEec-----ccccEEEEcCCCCcccCCCeEEEEee
Q 029432 87 SCKLKDPI---LYMNNGNS-LFNIT-----KEGNFYFTSGEPGHCQKKQKLHITVG 133 (193)
Q Consensus 87 ~C~~s~pi---~~~~~G~~-~v~L~-----~~G~~YFicg~~gHC~~GmKl~I~V~ 133 (193)
.=+-.+-+ .....|.+ .++++ ++|+|-|+|+ +|= |||-.|.|.
T Consensus 74 ~~~d~~via~t~~l~pGes~~vtf~~~~l~~~G~y~f~C~--gH~--~M~G~v~V~ 125 (125)
T 3fsa_A 74 KPDDSRVIAHTKLIGSGEKDSVTFDVSKLKEGEQYMFFCA--AHA--AMKGTLTLK 125 (125)
T ss_dssp CTTCTTCCEECCCBCTTCEEEEEEEGGGC---CCEEEECS--SST--TCEEEEEEC
T ss_pred CCCCccceeccceeCCCcEEEEEEeCcCcCCCccEEEEcC--CCC--CcEEEEEEC
Confidence 21111111 12344543 45554 5699999999 887 999999873
No 44
>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans}
Probab=94.49 E-value=0.064 Score=47.65 Aligned_cols=74 Identities=16% Similarity=0.103 Sum_probs=50.8
Q ss_pred cCCeeeeCCEEEEEeCCC---CCeEEEEcccCCCCCCCCCCceeccCCc---eEEEecccccEEEEcCCCCcccCCCeEE
Q 029432 56 KYHTFAIGDSLLFLYPPS---QDSVIQVTAQSYDSCKLKDPILYMNNGN---SLFNITKEGNFYFTSGEPGHCQKKQKLH 129 (193)
Q Consensus 56 ~~~~F~vGD~LvF~y~~~---~hsV~~V~~~~Y~~C~~s~pi~~~~~G~---~~v~L~~~G~~YFicg~~gHC~~GmKl~ 129 (193)
...+++.||+++|++.+. .|++.--.......|-. ..|. -.|+++++|+|||.|...+|=..||+..
T Consensus 55 p~i~v~~Gd~v~~~~~N~~~~~h~~~~~g~~~~~~~~i-------~pG~~~~~~f~~~~~Gt~~y~~~~~~h~~~Gm~G~ 127 (447)
T 2dv6_A 55 PTLVVHEGETVQVNLVNGEGAQHDVVVDQYAARSAIVN-------GKNASSTFSFVASKVGEFNYYCSIAGHRQAGMEGN 127 (447)
T ss_dssp CCEEEETTCEEEEEEECSSSSCBCCEETTTTEECCCBC-------STTBEEEEEEECCSCEEEEEECCSTTHHHHTCEEE
T ss_pred CeEEEcCCCEEEEEEEcCCCCceEEEEccCCcccceec-------CCCCeEEEEEEcCCCEEEEEEeCCCChhhCCCEEE
Confidence 357899999999988642 36664322111122321 2232 2566688999999999999988899999
Q ss_pred EEeeCCC
Q 029432 130 ITVGNVS 136 (193)
Q Consensus 130 I~V~~~~ 136 (193)
|.|....
T Consensus 128 i~V~~~~ 134 (447)
T 2dv6_A 128 IQVLPGN 134 (447)
T ss_dssp EEEESSC
T ss_pred EEEeCCc
Confidence 9998654
No 45
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=93.28 E-value=0.18 Score=47.60 Aligned_cols=68 Identities=12% Similarity=0.120 Sum_probs=45.4
Q ss_pred CCeeeeCCEEEEEeCCC------CCeEEEEcccCCCCCCCCCCceeccCCc---eEEEecccccEEEEcCC---CCcccC
Q 029432 57 YHTFAIGDSLLFLYPPS------QDSVIQVTAQSYDSCKLKDPILYMNNGN---SLFNITKEGNFYFTSGE---PGHCQK 124 (193)
Q Consensus 57 ~~~F~vGD~LvF~y~~~------~hsV~~V~~~~Y~~C~~s~pi~~~~~G~---~~v~L~~~G~~YFicg~---~gHC~~ 124 (193)
..++++||++.|...+. .|++..-+ +. .......|. ..|+.+++|.|||.|.. ..| .
T Consensus 514 ~I~V~~Gd~V~~~ltN~d~~~Dv~Hgf~ip~---~g------v~~~i~PG~t~t~~Fta~~pGtY~yhC~e~Cg~~H--~ 582 (595)
T 1fwx_A 514 SFTVKEGDEVTVIVTNLDEIDDLTHGFTMGN---YG------VAMEIGPQMTSSVTFVAANPGVYWYYCQWFCHALH--M 582 (595)
T ss_dssp EEEEETTCEEEEEEEECCCSTTCCEEEEETT---TT------EEEEECTTCEEEEEEECCSCEEEEEECCSCCSTTC--T
T ss_pred EEEEECCCEEEEEEEeCCCCCCceeeEEecC---CC------cceeeCCCCeEEEEEECCCCEEEEEECCCCCCCCc--c
Confidence 45889999999997642 46664321 11 011223343 26778999999999984 356 4
Q ss_pred CCeEEEEeeCC
Q 029432 125 KQKLHITVGNV 135 (193)
Q Consensus 125 GmKl~I~V~~~ 135 (193)
||+..|.|...
T Consensus 583 gM~G~IiV~p~ 593 (595)
T 1fwx_A 583 EMRGRMLVEPK 593 (595)
T ss_dssp TCEEEEEEECC
T ss_pred CCEEEEEEEcC
Confidence 99999999854
No 46
>3hei_B Ephrin-A1; EPH receptor tyrosine kinase, cell membrane, disulfi glycoprotein, GPI-anchor, lipoprotein, membrane, ATP-bindin kinase; 2.00A {Homo sapiens} SCOP: b.6.1.0
Probab=93.21 E-value=0.083 Score=40.92 Aligned_cols=76 Identities=21% Similarity=0.357 Sum_probs=46.3
Q ss_pred CeeeeCCEEEEEeC---C--------CCCeEEEEcccCCCCCCCCC-Cceecc-------CCceEEEec-----------
Q 029432 58 HTFAIGDSLLFLYP---P--------SQDSVIQVTAQSYDSCKLKD-PILYMN-------NGNSLFNIT----------- 107 (193)
Q Consensus 58 ~~F~vGD~LvF~y~---~--------~~hsV~~V~~~~Y~~C~~s~-pi~~~~-------~G~~~v~L~----------- 107 (193)
...++||.|-+-=+ . .+..+..|++++|++|+... +...+. .|+.+|++.
T Consensus 22 v~V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~Vs~~~y~~C~~~~~~~~~~~C~~P~~~~~~~kft~kFQ~FSP~p~G~ 101 (132)
T 3hei_B 22 IHVQLNDYVDIICPHYEDHSVADAAMEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLGK 101 (132)
T ss_dssp EEECTTCEEEEECCCCCTTSSCGGGCCCEEEEEECHHHHHHTCCSCGGGEEEEECCTTCTTSCCEEEEECCSCCSCTTSC
T ss_pred EEeCCCCeEEEECCCCCCCCCCCCCccEEEEEEeCHHHhccccCCCCCcEEEEeCCCCCCCCceEEEEEEEEcCCCCCCe
Confidence 46789999977432 2 23467789999999999765 333321 234444321
Q ss_pred --ccc-cEEEEcCCCC-cccCCCeEEEEee
Q 029432 108 --KEG-NFYFTSGEPG-HCQKKQKLHITVG 133 (193)
Q Consensus 108 --~~G-~~YFicg~~g-HC~~GmKl~I~V~ 133 (193)
++| .|||||.-.. |=..=+||.|.|.
T Consensus 102 EF~pG~~YY~ISt~~~~~~~~cl~l~v~v~ 131 (132)
T 3hei_B 102 EFKEGHSYYYISKPIHQHEDRCLRLKVTVK 131 (132)
T ss_dssp CCCTTCEEEEEEEESSCCCCSCCEEEEEEC
T ss_pred eecCCCcEEEEEccCCCCCCcceEEEEEEE
Confidence 566 4888887322 1111268888774
No 47
>3s8f_B Cytochrome C oxidase subunit 2; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 1ehk_B* 2qpd_B* 3qjq_B* 3qjr_B* 3qju_B* 3qjv_B* 1xme_B* 3s8g_B* 4esl_B* 4ev3_B* 4f05_B* 4fa7_B* 4faa_B* 3qjs_B* 3bvd_B* 2qpe_B* 3qjt_B* 3s3b_B* 3s33_B* 3s39_B* ...
Probab=91.90 E-value=0.77 Score=36.53 Aligned_cols=68 Identities=12% Similarity=0.138 Sum_probs=43.2
Q ss_pred cCCeeeeCCEEEEEeCCC--CCeEEEEcccCCCCCCCCCCce-eccCCc---eEEEecccccEEEEcCC-CCcccCCCeE
Q 029432 56 KYHTFAIGDSLLFLYPPS--QDSVIQVTAQSYDSCKLKDPIL-YMNNGN---SLFNITKEGNFYFTSGE-PGHCQKKQKL 128 (193)
Q Consensus 56 ~~~~F~vGD~LvF~y~~~--~hsV~~V~~~~Y~~C~~s~pi~-~~~~G~---~~v~L~~~G~~YFicg~-~gHC~~GmKl 128 (193)
+...+.+|+.+.|...+. -|+... .++ .++ ....|. -.++.+++|.||+.|.. -|+--.+|+.
T Consensus 93 n~l~VP~G~~Vr~~vTS~DViHsf~I---P~l-------gik~da~PG~~n~~~~~~~kpG~y~g~Cse~CG~~Hs~M~g 162 (168)
T 3s8f_B 93 NPIEVPQGAEIVFKITSPDVIHGFHV---EGT-------NINVEVLPGEVSTVRYTFKRPGEYRIICNQYCGLGHQNMFG 162 (168)
T ss_dssp SSEEEETTSEEEEEEECSSSCEEEEE---TTS-------SCEEEECTTBCEEEEEECCSCEEEEEECCSCCSTTGGGCEE
T ss_pred CEEEEeCCCeEEEEEecCCceEEEEE---CCC-------CeEEEecCCceeEEEEEeCCCEEEEEECCcCCCCCcCCCEE
Confidence 345788899998887642 233322 111 111 112343 36778999999999985 4444567999
Q ss_pred EEEee
Q 029432 129 HITVG 133 (193)
Q Consensus 129 ~I~V~ 133 (193)
.|.|.
T Consensus 163 ~V~V~ 167 (168)
T 3s8f_B 163 TIVVK 167 (168)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99986
No 48
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=91.25 E-value=0.41 Score=45.50 Aligned_cols=67 Identities=13% Similarity=0.148 Sum_probs=44.5
Q ss_pred CCeeeeCCEEEEEeCCC------CCeEEEEcccCCCCCCCCCCceeccCCce---EEEecccccEEEEcCCCCcccCC--
Q 029432 57 YHTFAIGDSLLFLYPPS------QDSVIQVTAQSYDSCKLKDPILYMNNGNS---LFNITKEGNFYFTSGEPGHCQKK-- 125 (193)
Q Consensus 57 ~~~F~vGD~LvF~y~~~------~hsV~~V~~~~Y~~C~~s~pi~~~~~G~~---~v~L~~~G~~YFicg~~gHC~~G-- 125 (193)
..++.+||.+.|...+. .|++..-+ +. .......|.+ .|+.+++|.|||+|.. +|-.+
T Consensus 559 eI~VP~GdtVrfiLTN~D~veDViHSF~IPs---lG------IK~DaiPGrtnsvtFtadkPGvY~y~CSE--~CGa~Hs 627 (638)
T 3sbq_A 559 EFTVKQGDEVTVTITNIDQIEDVSHGFVVVN---HG------VSMEISPQQTSSITFVADKPGLHWYYCSW--FCHALHM 627 (638)
T ss_dssp EEEEETTCEEEEEEEECCCSTTCCEEEEETT---TT------EEEEECTTCEEEEEEECCSCEEEEEECCS--CCSTTCT
T ss_pred EEEEecCceeEEEEecCCcCCCceeeeEecC---CC------ceeeeCCCCeEEEEEEcCCCEEEEEECCC--cCCCCcc
Confidence 46899999999987642 45554311 11 1112233432 5778999999999997 55554
Q ss_pred -CeEEEEeeC
Q 029432 126 -QKLHITVGN 134 (193)
Q Consensus 126 -mKl~I~V~~ 134 (193)
|+..|.|.+
T Consensus 628 ~M~G~ViVEP 637 (638)
T 3sbq_A 628 EMVGRMMVEP 637 (638)
T ss_dssp TCEEEEEEEC
T ss_pred cceEEEEEec
Confidence 999999974
No 49
>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron oxidoreductase; 1.46A {Rhodobacter sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A 1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A
Probab=84.62 E-value=1.3 Score=37.83 Aligned_cols=76 Identities=17% Similarity=0.147 Sum_probs=48.3
Q ss_pred CCeeeeCCEEEEEeCCC-----CCeEEEEcccCCCCCCCCCCceeccCCce---EEEecccccEEEEcCCCC-----ccc
Q 029432 57 YHTFAIGDSLLFLYPPS-----QDSVIQVTAQSYDSCKLKDPILYMNNGNS---LFNITKEGNFYFTSGEPG-----HCQ 123 (193)
Q Consensus 57 ~~~F~vGD~LvF~y~~~-----~hsV~~V~~~~Y~~C~~s~pi~~~~~G~~---~v~L~~~G~~YFicg~~g-----HC~ 123 (193)
..+++.||+|++++.+. -|.+..-...+.+.- .++.....|.+ .|+++++|++||-|-..+ |=.
T Consensus 65 ~i~~~~Gd~v~v~~~N~~~~~h~Hg~~~~~~~~~~~~---~~~~~i~PG~~~~y~f~~~~~Gt~~yH~h~~~~~~~~~~~ 141 (333)
T 1mzy_A 65 LMIVHEGDYVELTLINPPENTMPHNIDFHAATGALGG---GGLTLINPGEKVVLRFKATRAGAFVYHCAPGGPMIPWHVV 141 (333)
T ss_dssp EEEEETTCEEEEEEEECTTCCSCBCCEETTSCSGGGG---GGGCCBCTTEEEEEEEECCSCEEEEEECCCSTTHHHHHHH
T ss_pred cEEecCCCEEEEEEEECCCCcccccceecCCCCCCCC---CceeEeCCCCEEEEEEECCCCEEEEEeecCCcccchhhhh
Confidence 35789999999988653 355543221111100 11111333433 677789999999998874 777
Q ss_pred CCCeEEEEeeCC
Q 029432 124 KKQKLHITVGNV 135 (193)
Q Consensus 124 ~GmKl~I~V~~~ 135 (193)
.||.-.+.|...
T Consensus 142 ~Gl~G~~iV~~~ 153 (333)
T 1mzy_A 142 SGMAGCIMVLPR 153 (333)
T ss_dssp TTCEEEEEEECT
T ss_pred CCCEEEEEEccC
Confidence 899999988754
No 50
>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification; HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3 b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A 1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A* 2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X* 2jl3_A* ...
Probab=83.78 E-value=1.5 Score=37.42 Aligned_cols=76 Identities=16% Similarity=0.128 Sum_probs=47.7
Q ss_pred CeeeeCCEEEEEeCCC-----CCeEEEEcccCCCCCCCCCCceeccCCce---EEEecccccEEEEcCCCC----cccCC
Q 029432 58 HTFAIGDSLLFLYPPS-----QDSVIQVTAQSYDSCKLKDPILYMNNGNS---LFNITKEGNFYFTSGEPG----HCQKK 125 (193)
Q Consensus 58 ~~F~vGD~LvF~y~~~-----~hsV~~V~~~~Y~~C~~s~pi~~~~~G~~---~v~L~~~G~~YFicg~~g----HC~~G 125 (193)
.+++.||+|++++.+. .|++..-.....+ -..++.....|.+ .|+++++|++||-|...+ |=..|
T Consensus 67 i~v~~Gd~v~v~~~N~~~~~~~h~~~~h~~~~~~---~~~~~~~i~pG~~~~y~f~~~~~Gt~~yH~h~~~~~~~~~~~G 143 (336)
T 1oe1_A 67 LVVHEGDYVQLTLVNPATNAMPHNVDFHGATGAL---GGAKLTNVNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVSG 143 (336)
T ss_dssp EEEETTCEEEEEEEECTTCCSCBCCEETTSCSGG---GGGGGCCBCTTEEEEEEEECCSCEEEEEECCCTTCHHHHHHTT
T ss_pred EEEcCCCEEEEEEEcCCCCCccccceECCCCCCC---CCcceEEeCCCCEEEEEEECCCCeEEEEecCCCCchhHHHhCC
Confidence 4789999999888642 4655442111000 0011112334433 567789999999998764 56789
Q ss_pred CeEEEEeeCCC
Q 029432 126 QKLHITVGNVS 136 (193)
Q Consensus 126 mKl~I~V~~~~ 136 (193)
|.-.+.|....
T Consensus 144 l~G~liV~~~~ 154 (336)
T 1oe1_A 144 MSGTLMVLPRD 154 (336)
T ss_dssp CEEEEEEECTT
T ss_pred CeEEEEEecCc
Confidence 99999998543
No 51
>1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-], oxidoreductase; 1.95A {Neisseria gonorrhoeae} SCOP: b.6.1.3 b.6.1.3 PDB: 1kbw_A
Probab=78.61 E-value=2.1 Score=36.59 Aligned_cols=76 Identities=13% Similarity=0.100 Sum_probs=45.7
Q ss_pred CCeeeeCCEEEEEeCCC-----CCeEEEEcccCCCCCCCCCCceeccCCce---EEEecccccEEEEcCCC---CcccCC
Q 029432 57 YHTFAIGDSLLFLYPPS-----QDSVIQVTAQSYDSCKLKDPILYMNNGNS---LFNITKEGNFYFTSGEP---GHCQKK 125 (193)
Q Consensus 57 ~~~F~vGD~LvF~y~~~-----~hsV~~V~~~~Y~~C~~s~pi~~~~~G~~---~v~L~~~G~~YFicg~~---gHC~~G 125 (193)
..+++.||++++++.+. .|++.-=--...|. ... ......|.+ .|+.+.+|++||-|... .|=..|
T Consensus 71 ~i~v~~Gd~v~v~~~N~~~~~~~~~ih~HG~~~~dG--~~~-~~~i~PG~~~~y~f~~~~~Gt~wyH~h~~~~~~~~~~G 147 (327)
T 1kbv_A 71 MIRVREGDTVEVEFSNNPSSTVPHNVDFHAATGQGG--GAA-ATFTAPGRTSTFSFKALQPGLYIYHCAVAPVGMHIANG 147 (327)
T ss_dssp BEEEETTCEEEEEEEECTTCSSCBCCEETTCCSGGG--GTT-TTCBCTTEEEEEEEECCSCEEEEEECCCSSHHHHHHTT
T ss_pred eEEEeCCCEEEEEEEECCCCCCceeeEeCccccCCC--CCc-ceeecCCCEEEEEEECCCCeEEEEEeCCCChhhhhhcc
Confidence 45889999999988643 35543200000110 000 011233432 56678899999999763 466789
Q ss_pred CeEEEEeeCC
Q 029432 126 QKLHITVGNV 135 (193)
Q Consensus 126 mKl~I~V~~~ 135 (193)
|.-.+.|...
T Consensus 148 l~G~~iV~~~ 157 (327)
T 1kbv_A 148 MYGLILVEPK 157 (327)
T ss_dssp CEEEEEEECT
T ss_pred eEEEEEEecC
Confidence 9999999864
No 52
>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis}
Probab=75.51 E-value=1.9 Score=38.01 Aligned_cols=76 Identities=12% Similarity=0.105 Sum_probs=45.5
Q ss_pred CCeeeeCCEEEEEeCCC-----CCeEEEEcccCCCCCCCCCCceeccCCce---EEEecccccEEEEcC---CCCcccCC
Q 029432 57 YHTFAIGDSLLFLYPPS-----QDSVIQVTAQSYDSCKLKDPILYMNNGNS---LFNITKEGNFYFTSG---EPGHCQKK 125 (193)
Q Consensus 57 ~~~F~vGD~LvF~y~~~-----~hsV~~V~~~~Y~~C~~s~pi~~~~~G~~---~v~L~~~G~~YFicg---~~gHC~~G 125 (193)
..+++.||++++++.+. .|++.-=--...+. .........|.+ .|+.+.+|++||-|- ...|=..|
T Consensus 61 ~i~v~~Gd~v~v~~~N~l~~~~~~~iH~HG~~~~dG---~~~~~~i~pg~~~~y~f~~~~~Gt~~yH~H~~~~~~~~~~G 137 (442)
T 2zoo_A 61 FIRVREGDEIEFNLSNHPSSKMPHNIDLHAVTGPGG---GAESSFTAPGHTSTFNFKALNPGLYIYHCATAPVGMHIANG 137 (442)
T ss_dssp BEEEETTCEEEEEEEECTTCSSCBCCEETTCCSGGG---GGGGCCBCTTCEEEEEEECCSCEEEEEECCCSSHHHHHHTT
T ss_pred cEEEeCCCEEEEEEEECCCCCCCCCEEecCCcCCCC---CCccEEECCCCEEEEEEEcCCCeEEEEecCCCChHHHHhCc
Confidence 45789999999988643 34443210000010 000011233432 567788999999994 34577789
Q ss_pred CeEEEEeeCC
Q 029432 126 QKLHITVGNV 135 (193)
Q Consensus 126 mKl~I~V~~~ 135 (193)
|...+.|...
T Consensus 138 l~G~~iv~~~ 147 (442)
T 2zoo_A 138 MYGLILVEPK 147 (442)
T ss_dssp CEEEEEEECT
T ss_pred cEEEEEEeCC
Confidence 9999988854
No 53
>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification; HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3 b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A 1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A* 2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X* 2jl3_A* ...
Probab=74.46 E-value=3.2 Score=35.29 Aligned_cols=35 Identities=14% Similarity=0.179 Sum_probs=30.0
Q ss_pred EEEecccccEEEEcCCCCcc-cCCCeEEEEeeCCCC
Q 029432 103 LFNITKEGNFYFTSGEPGHC-QKKQKLHITVGNVSA 137 (193)
Q Consensus 103 ~v~L~~~G~~YFicg~~gHC-~~GmKl~I~V~~~~~ 137 (193)
.|+.+.+|.|+|.|....|+ +.||.-.+.|.....
T Consensus 286 lv~~~~pG~y~~~~h~~~~~~~~G~~~~~~V~~~~~ 321 (336)
T 1oe1_A 286 LYTFKQPGVYAYLNHNLIEAFELGAAGHIKVEGKWN 321 (336)
T ss_dssp EEECCSCEEEEEEESSHHHHHTTSCEEEEEEESCCC
T ss_pred EEEcCCCceEEEEechhhccccCCCeEEEEECCCCC
Confidence 56678899999999988899 999999999986543
No 54
>2bw4_A Copper-containing nitrite reductase; oxidoreductase, denitrification, catalysis, enzyme mechanism, nitrate assimilation; 0.90A {Achromobacter cycloclastes} SCOP: b.6.1.3 b.6.1.3 PDB: 1nib_A 1nia_A 1nid_A 1nie_A 1nic_A 1nif_A 2bw5_A 2bwd_A 2bwi_A 2nrd_A 2y1a_A 1kcb_A 1rzp_A* 1rzq_A 2avf_A 1as6_A 1aq8_A 1as7_A 1as8_A 2afn_A ...
Probab=73.61 E-value=4.2 Score=34.55 Aligned_cols=76 Identities=17% Similarity=0.120 Sum_probs=47.6
Q ss_pred CeeeeCCEEEEEeCCC-----CCeEEEEcccCCCCCCCCCCceeccCCce---EEEecccccEEEEcCCCC----cccCC
Q 029432 58 HTFAIGDSLLFLYPPS-----QDSVIQVTAQSYDSCKLKDPILYMNNGNS---LFNITKEGNFYFTSGEPG----HCQKK 125 (193)
Q Consensus 58 ~~F~vGD~LvF~y~~~-----~hsV~~V~~~~Y~~C~~s~pi~~~~~G~~---~v~L~~~G~~YFicg~~g----HC~~G 125 (193)
.+++.||++++++.+. .|.+..-.....+ + ..+......|.+ .|+++++|++||-|...+ |=..|
T Consensus 73 i~v~~Gd~v~v~~~N~~~~~~~hg~~~~~~~~~~--~-~~~~~~i~PG~~~~y~~~~~~~Gt~wyH~h~~~~~~~~~~~G 149 (340)
T 2bw4_A 73 MVVHENDYVELRLINPDTNTLLHNIDFHAATGAL--G-GGALTQVNPGEETTLRFKATKPGVFVYHCAPEGMVPWHVTSG 149 (340)
T ss_dssp EEEETTCEEEEEEEECTTCCSCBCCEETTSCSGG--G-GGGGCCBCTTEEEEEEEECCSCEEEEEECCCTTCHHHHHHTT
T ss_pred EEEcCCCEEEEEEEeCCCCCccCcceeCCcCCCC--C-CccceEeCCCCEEEEEEECCCCeEEEEEcCCCCchhhHHhCc
Confidence 5789999999988753 3555431111000 0 011112334433 577789999999999764 66789
Q ss_pred CeEEEEeeCCC
Q 029432 126 QKLHITVGNVS 136 (193)
Q Consensus 126 mKl~I~V~~~~ 136 (193)
|.-.+.|....
T Consensus 150 l~G~~iV~~~~ 160 (340)
T 2bw4_A 150 MNGAIMVLPRD 160 (340)
T ss_dssp CEEEEEEECTB
T ss_pred CEEEEEEccCc
Confidence 99998887543
No 55
>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A {Arthrobacter SP}
Probab=66.18 E-value=11 Score=31.33 Aligned_cols=79 Identities=14% Similarity=0.060 Sum_probs=46.0
Q ss_pred CCeeeeCCEEEEEeCCC---CCeEEEE--cccCCCCCCCCCCceeccCCc---eEEEecccccEEEEcCCC---CcccCC
Q 029432 57 YHTFAIGDSLLFLYPPS---QDSVIQV--TAQSYDSCKLKDPILYMNNGN---SLFNITKEGNFYFTSGEP---GHCQKK 125 (193)
Q Consensus 57 ~~~F~vGD~LvF~y~~~---~hsV~~V--~~~~Y~~C~~s~pi~~~~~G~---~~v~L~~~G~~YFicg~~---gHC~~G 125 (193)
..+++.||.+++++.+. .|++.-= .....|.-.... ......|. ..|+.+.+|++||-|-.. .|=..|
T Consensus 67 ~i~~~~Gd~v~v~~~N~~~~~~~iH~HG~~~~~~DG~p~~~-~~~i~PG~~~~y~f~~~~~Gt~~yH~H~~~~~~~~~~G 145 (288)
T 3gdc_A 67 TLWAREGDALRIHFTNAGAHPHTIHFHGVHRATMDGTPGIG-AGSIAPGQSFTYEFDATPFGTHLYHCHQSPLAPHIAKG 145 (288)
T ss_dssp EEEEETTCEEEEEEEECSSSCBCCEESSCCCGGGSCCTTST-TCSBCTTCEEEEEEECCSCEEEEEECCCSSHHHHHHTT
T ss_pred cEEEeCCCEEEEEEEeCCCCcccEEeccccccccCCCCCcc-ceeECCCCEEEEEEEcCCCccEEEEecCcchHHHHhCc
Confidence 35889999999988642 2333220 001111000000 01112233 267778999999999876 366789
Q ss_pred CeEEEEeeCCC
Q 029432 126 QKLHITVGNVS 136 (193)
Q Consensus 126 mKl~I~V~~~~ 136 (193)
|.-.+.|....
T Consensus 146 l~G~liV~~~~ 156 (288)
T 3gdc_A 146 LYGGFIVEPKE 156 (288)
T ss_dssp CEEEEEEECSS
T ss_pred CeEEEEEeCCc
Confidence 99999997543
No 56
>3l6w_A Hemocyanin 1; cupredoxin domain, copper-binding protein, metal-binding, oxygen binding; 4.00A {Megathura crenulata} PDB: 3qjo_A
Probab=61.58 E-value=7.5 Score=35.91 Aligned_cols=75 Identities=12% Similarity=0.329 Sum_probs=45.7
Q ss_pred CCeeeeCCEEEEEeCCCC--CeEEEE-cccCCCCCCCCCCceeccCCc-eEEEecccccEEEEcCCCCcccCCC-eEEEE
Q 029432 57 YHTFAIGDSLLFLYPPSQ--DSVIQV-TAQSYDSCKLKDPILYMNNGN-SLFNITKEGNFYFTSGEPGHCQKKQ-KLHIT 131 (193)
Q Consensus 57 ~~~F~vGD~LvF~y~~~~--hsV~~V-~~~~Y~~C~~s~pi~~~~~G~-~~v~L~~~G~~YFicg~~gHC~~Gm-Kl~I~ 131 (193)
+.-.+-|-.+.|.=.... .-++.. +-.+...|...--. ++.=+ .++---++|.|||..+...-|++|- |+.|.
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (491)
T 3l6w_A 412 KVVVKRGTKIMFMSVDEAVTTPMLNLGSYTAMFKCKVPPFS--FHAFELGKMYSVESGDYFMTASTTELCNDNNLRIHVH 489 (491)
T ss_pred eeEeecCCEEEEEecccchhhHHHhhhhhhhhhccccCCCc--cCcccccceEecCCCceEecCChHHHHhCCceeEEEE
Confidence 456788888888543211 111222 34445568764321 11100 1222236899999999999999998 99998
Q ss_pred ee
Q 029432 132 VG 133 (193)
Q Consensus 132 V~ 133 (193)
|.
T Consensus 490 ~~ 491 (491)
T 3l6w_A 490 VD 491 (491)
T ss_pred eC
Confidence 84
No 57
>3cg8_A Laccase; oxidoreductase, multicopper blue protein; HET: PG4; 2.68A {Streptomyces coelicolor}
Probab=59.89 E-value=16 Score=31.42 Aligned_cols=32 Identities=9% Similarity=0.084 Sum_probs=28.1
Q ss_pred cccccEEEEcCCCCcccCCCeEEEEeeCCCCC
Q 029432 107 TKEGNFYFTSGEPGHCQKKQKLHITVGNVSAE 138 (193)
Q Consensus 107 ~~~G~~YFicg~~gHC~~GmKl~I~V~~~~~~ 138 (193)
+.+|.++|-|-+..|=+.||...+.|......
T Consensus 279 ~~pG~w~~HCHi~~H~~~GM~g~~~V~~~~~~ 310 (343)
T 3cg8_A 279 VGAGAWMYHCHVQSHSDMGMVGLFLVKKPDGT 310 (343)
T ss_dssp TCSEEEEEEECSHHHHHTTCEEEEEEECTTSC
T ss_pred CCCeeEEEeCCCHHHHhccCcEEEEEecCCCC
Confidence 47999999999999999999999999876543
No 58
>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron oxidoreductase; 1.46A {Rhodobacter sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A 1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A
Probab=57.28 E-value=7 Score=33.13 Aligned_cols=33 Identities=15% Similarity=0.288 Sum_probs=29.1
Q ss_pred EEEecccccEEEEcCCCCcc-cCCCeEEEEeeCC
Q 029432 103 LFNITKEGNFYFTSGEPGHC-QKKQKLHITVGNV 135 (193)
Q Consensus 103 ~v~L~~~G~~YFicg~~gHC-~~GmKl~I~V~~~ 135 (193)
.|+.+.+|.|+|.|-...|+ +.||.-.+.|...
T Consensus 286 ~v~a~~pG~y~~~ch~~~h~~~~Gm~~~~~v~~~ 319 (333)
T 1mzy_A 286 LYKFLQPGVYAYVNHNLIEAVHKGATAHVLVEGE 319 (333)
T ss_dssp EEECCSCEEEEEEESSHHHHHTTCCEEEEEEESC
T ss_pred EEEcCCCEEEEEecChhhhHhhCCCEEEEEEcCC
Confidence 56678899999999999999 9999999999864
No 59
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=56.24 E-value=5 Score=28.62 Aligned_cols=19 Identities=26% Similarity=0.412 Sum_probs=16.1
Q ss_pred ccCCeeeeCCEEEEEeCCC
Q 029432 55 SKYHTFAIGDSLLFLYPPS 73 (193)
Q Consensus 55 A~~~~F~vGD~LvF~y~~~ 73 (193)
+..+..++||.|+|+|...
T Consensus 73 v~~~~L~~GD~lvF~~~~~ 91 (104)
T 1yel_A 73 VKDNNLEDGKYLQFIYDRD 91 (104)
T ss_dssp HHHHTCCTTCEEEEEECSS
T ss_pred HHHcCCCCCCEEEEEEcCC
Confidence 5677899999999999853
No 60
>2zwn_A Two-domain type laccase; muticopper oxidase, oxidoreductase; 1.70A {Metagenomes}
Probab=51.77 E-value=15 Score=31.37 Aligned_cols=76 Identities=14% Similarity=0.212 Sum_probs=43.6
Q ss_pred CCeeeeCCEEEEEeCCC---CCeEE-----EEcccCCCCC-CC-CCCceeccCCc---eEEEecccccEEEEcCCCC--c
Q 029432 57 YHTFAIGDSLLFLYPPS---QDSVI-----QVTAQSYDSC-KL-KDPILYMNNGN---SLFNITKEGNFYFTSGEPG--H 121 (193)
Q Consensus 57 ~~~F~vGD~LvF~y~~~---~hsV~-----~V~~~~Y~~C-~~-s~pi~~~~~G~---~~v~L~~~G~~YFicg~~g--H 121 (193)
..+++.||++++++.+. .+++. +......|.= .. ..++ ..|. ..|+++++|+|||-|.... |
T Consensus 36 ~I~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGvp~vtq~~I---~PG~~~~y~f~~~~~Gt~wyH~H~~~~~q 112 (339)
T 2zwn_A 36 LIHVQEGDDVIVNVTNNTSLPHTIHWHGVHQKGTWRSDGVPGVTQQPI---EAGDSYTYKFKADRIGTLWYHCHVNVNEH 112 (339)
T ss_dssp EEEEETTCEEEEEEEEESSSCBCCEEETCCCTTCGGGSCCBTTTBCCB---CTTCEEEEEEECCSCEEEEEECCSSHHHH
T ss_pred eEEEECCCEEEEEEEECCCCCccEEeCCCCcCCCcccCCCCccccCcc---CCCCeEEEEEECCCCEEEEEEecCCchhh
Confidence 46889999999988642 22222 1111001110 00 0111 2233 3677889999999997654 4
Q ss_pred cc-CCCeEEEEeeCC
Q 029432 122 CQ-KKQKLHITVGNV 135 (193)
Q Consensus 122 C~-~GmKl~I~V~~~ 135 (193)
=. .||.-.+.|...
T Consensus 113 ~~~~Gl~G~liV~p~ 127 (339)
T 2zwn_A 113 VGVRGMWGPLIVDPK 127 (339)
T ss_dssp TTTSCCEEEEEEECS
T ss_pred hhcCCceEeEEecCC
Confidence 44 899888888643
No 61
>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A {Arthrobacter SP}
Probab=51.66 E-value=6.6 Score=32.79 Aligned_cols=32 Identities=13% Similarity=0.146 Sum_probs=27.9
Q ss_pred EEEecccccEEEEcCCCCcccCCCeEEEEeeC
Q 029432 103 LFNITKEGNFYFTSGEPGHCQKKQKLHITVGN 134 (193)
Q Consensus 103 ~v~L~~~G~~YFicg~~gHC~~GmKl~I~V~~ 134 (193)
.++.+.+|.+.|.|-+..|=++||.-.+.|.+
T Consensus 257 ~~~~~~pG~~~~hCH~~~H~~~GM~~~~~V~~ 288 (288)
T 3gdc_A 257 ELRFPYPGKFMFHAHKTEFAELGWMGFFEVSA 288 (288)
T ss_dssp EECCCSCEEEEEECSSHHHHTTTCEEEEEEEC
T ss_pred EEECCCCEEEEEEecChHHHhcCCCEEEEEeC
Confidence 44567899999999999999999999999863
No 62
>3kw8_A Laccase, putative copper oxidase; two-domain laccase, oxidoreductase, multicopper blue protein; HET: PG4 PGE; 2.29A {Streptomyces coelicolor} PDB: 4gxf_A* 4gy4_A*
Probab=50.13 E-value=12 Score=31.03 Aligned_cols=30 Identities=10% Similarity=0.090 Sum_probs=27.1
Q ss_pred ccccEEEEcCCCCcccCCCeEEEEeeCCCC
Q 029432 108 KEGNFYFTSGEPGHCQKKQKLHITVGNVSA 137 (193)
Q Consensus 108 ~~G~~YFicg~~gHC~~GmKl~I~V~~~~~ 137 (193)
.+|.++|-|-...|=..||...+.|.....
T Consensus 239 npG~w~~HCH~~~H~~~GM~g~~~V~~~~~ 268 (276)
T 3kw8_A 239 GAGAWMYHCHVQSHSDMGMVGLFLVKKPDG 268 (276)
T ss_dssp CSEEEEEEECSHHHHHTTCEEEEEEECTTS
T ss_pred CCCeEEEECCCchHhhCCCeEEEEEeCCCC
Confidence 489999999999999999999999987654
No 63
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=50.08 E-value=7.5 Score=29.80 Aligned_cols=28 Identities=21% Similarity=0.366 Sum_probs=20.6
Q ss_pred ccccCCeeeeCCEEEEEeCCCCCeEEEE
Q 029432 53 KWSKYHTFAIGDSLLFLYPPSQDSVIQV 80 (193)
Q Consensus 53 ~WA~~~~F~vGD~LvF~y~~~~hsV~~V 80 (193)
+-+..+..++||.++|++.....-+.+|
T Consensus 110 ~Fv~dn~L~~GD~cvFeli~~~~~~f~V 137 (146)
T 4i1k_A 110 EFTLENNLGEGDVCVFELLRTRDFVLKV 137 (146)
T ss_dssp HHHHHTTCCTTCEEEEEECSSSSCEEEE
T ss_pred HHHHHcCCCCCCEEEEEEecCCceEEEE
Confidence 3455678999999999998654335555
No 64
>1sdd_A Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3
Probab=49.45 E-value=2.7 Score=35.52 Aligned_cols=33 Identities=24% Similarity=0.324 Sum_probs=20.4
Q ss_pred EEEecccccEEEEcCCCCcccCCCeEEEEeeCC
Q 029432 103 LFNITKEGNFYFTSGEPGHCQKKQKLHITVGNV 135 (193)
Q Consensus 103 ~v~L~~~G~~YFicg~~gHC~~GmKl~I~V~~~ 135 (193)
.|+.+.+|.++|-|-...|-..||...+.|...
T Consensus 269 ~~~~~~pG~~~~hch~~~H~~~GM~~~~~V~~~ 301 (306)
T 1sdd_A 269 NMTVSPEGRWTIASLIPRHFQAGMQAYIDIKNC 301 (306)
T ss_dssp -------CCCCCBCCSTTTGGGTCBCCC-----
T ss_pred EEEcCCCeEEEEEeCChHHHhcCCeEEEEEecC
Confidence 566778999999999999999999999888743
No 65
>3hb3_B Cytochrome C oxidase subunit 2; electron transfer, proton transfer, proton pumping, membrane protein, cell inner membrane, cell membrane, copper; HET: HEA LDA LMT; 2.25A {Paracoccus denitrificans} PDB: 1ar1_B* 3ehb_B* 1qle_B*
Probab=43.82 E-value=20 Score=30.84 Aligned_cols=31 Identities=16% Similarity=0.344 Sum_probs=25.2
Q ss_pred EEEecccccEEEEcCCCCcccC---CCeEEEEeeCC
Q 029432 103 LFNITKEGNFYFTSGEPGHCQK---KQKLHITVGNV 135 (193)
Q Consensus 103 ~v~L~~~G~~YFicg~~gHC~~---GmKl~I~V~~~ 135 (193)
.++.+++|.||..|.. .|.. .|++.|.|.+.
T Consensus 232 ~~~~~~~G~y~g~CsE--~CG~~Hs~M~~~v~vvs~ 265 (298)
T 3hb3_B 232 WFSVDQEGVYFGQCSE--LCGINHAYMPIVVKAVSQ 265 (298)
T ss_dssp EEECSSSEEEEECCCS--CCSTTTTSCCEEEEEECH
T ss_pred EEEeCCCEEEEEEccc--ccCcCccCCeeEEEEEcH
Confidence 5778999999999985 5655 49999998765
No 66
>2q9o_A Laccase-1; multicopper oxidase, 2-OXOH oxidoreductase; HET: OHI NAG MAN GOL; 1.30A {Melanocarpus albomyces} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 3fu7_A* 3fu8_A* 3fu7_B* 1gw0_A* 2ih9_A* 2ih8_A* 3fu9_A* 3qpk_A* 3dkh_A* 3pps_A*
Probab=43.70 E-value=25 Score=32.18 Aligned_cols=76 Identities=13% Similarity=0.074 Sum_probs=47.5
Q ss_pred CCeeeeCCEEEEEeCCCC----CeEEE----Ecc-cCCCC-CCCC-CCceeccC-Cc---eEEEecccccEEEEcCCCCc
Q 029432 57 YHTFAIGDSLLFLYPPSQ----DSVIQ----VTA-QSYDS-CKLK-DPILYMNN-GN---SLFNITKEGNFYFTSGEPGH 121 (193)
Q Consensus 57 ~~~F~vGD~LvF~y~~~~----hsV~~----V~~-~~Y~~-C~~s-~pi~~~~~-G~---~~v~L~~~G~~YFicg~~gH 121 (193)
..+++.||+|+.++.+.- +++.- +.. ...|. -..+ .+| .. |. ..|+++++|+|||=|-...|
T Consensus 68 ~i~~~~GD~v~v~v~N~l~~~~tsiHwHG~~~~~~~~~DG~~~~tq~~I---~P~G~~~~Y~f~~~q~GT~wYH~H~~~q 144 (559)
T 2q9o_A 68 NIVANWGDTVEVTVINNLVTNGTSIHWHGIXQKDTNLHDGANGVTECPI---PPKGGQRTYRWRARQYGTSWYHSHFSAQ 144 (559)
T ss_dssp CEEEETTCEEEEEEEEECSSCCBCEEEETCCCTTCGGGSCCBTTTBCCB---CTTTEEEEEEEECCSCEEEEEEECSTTG
T ss_pred cEEEeCCCEEEEEEEeCCCCCCceEEcCCCccCCCCCcCCCCccccCcc---CCCCCeEEEEEECCCCEEEEEEEcccch
Confidence 357889999999886422 33321 111 11111 0000 112 22 43 36788899999999999888
Q ss_pred ccCCCeEEEEeeCC
Q 029432 122 CQKKQKLHITVGNV 135 (193)
Q Consensus 122 C~~GmKl~I~V~~~ 135 (193)
=..||--.+.|...
T Consensus 145 ~~~Gl~G~liV~~~ 158 (559)
T 2q9o_A 145 YGNGVVGTIQINGP 158 (559)
T ss_dssp GGGTCEEEEEEECC
T ss_pred hcCCceEEEEecCC
Confidence 88899999988854
No 67
>3g5w_A Multicopper oxidase type 1; two domain, laccase, nitrifier, metal B protein; 1.90A {Nitrosomonas europaea}
Probab=42.82 E-value=31 Score=29.19 Aligned_cols=34 Identities=15% Similarity=0.213 Sum_probs=26.8
Q ss_pred EEEecccccEEEEcCCCCcccC------CCeEEEEeeCCC
Q 029432 103 LFNITKEGNFYFTSGEPGHCQK------KQKLHITVGNVS 136 (193)
Q Consensus 103 ~v~L~~~G~~YFicg~~gHC~~------GmKl~I~V~~~~ 136 (193)
.|+.+.+|.+.|-|-...|-.+ ||.-.|.+....
T Consensus 239 ~~~a~~pG~w~~hCH~~~H~~~g~~~~~Gm~~~i~~~g~~ 278 (318)
T 3g5w_A 239 ILNMDNPGLWMIHDHVDTHTTNGDKPDGGIMTTIEYEEVG 278 (318)
T ss_dssp EEECCSCSEEEEEESSGGGSCBTTBSSCBSEEEEEETTTC
T ss_pred EEECCCCeeEEEEeccHHHhhccCcCCCCCEEEEEECCCC
Confidence 4567889999999999999984 667777776543
No 68
>1zpu_A Iron transport multicopper oxidase FET3; ferroxidase, oxidoreduc; HET: NAG BMA MAN NDG; 2.80A {Saccharomyces cerevisiae}
Probab=42.64 E-value=32 Score=31.29 Aligned_cols=77 Identities=22% Similarity=0.295 Sum_probs=48.1
Q ss_pred CCeeeeCCEEEEEeCCCCC----eE-----EEEcccCCCC-CCC-CCCceeccCCc---eEEEec-ccccEEEEcCCCCc
Q 029432 57 YHTFAIGDSLLFLYPPSQD----SV-----IQVTAQSYDS-CKL-KDPILYMNNGN---SLFNIT-KEGNFYFTSGEPGH 121 (193)
Q Consensus 57 ~~~F~vGD~LvF~y~~~~h----sV-----~~V~~~~Y~~-C~~-s~pi~~~~~G~---~~v~L~-~~G~~YFicg~~gH 121 (193)
..+++.||.|+.++.+.-. ++ .+-.....|. ... ..+| ..|. ..|+++ .+|+|||=|-...|
T Consensus 35 ~i~~~~Gd~v~v~v~N~l~~~~tsiHwHG~~~~~~~~~DG~~~vtq~pI---~PG~~~~Y~f~~~~~~GT~wYH~H~~~q 111 (534)
T 1zpu_A 35 DITVNKGDRVQIYLTNGMNNTNTSMHFHGLFQNGTASMDGVPFLTQCPI---APGSTMLYNFTVDYNVGTYWYHSHTDGQ 111 (534)
T ss_dssp CEEEETTCEEEEEEECCCSSCCBCCEEETCCCTTCGGGSCCBTTTBCCB---CTTCEEEEEEECSSCCEEEEEECCSSSG
T ss_pred cEEEECCCEEEEEEEeCCCCCCeeEEcCCcccCCCCcccCCCccccCCc---CCCCeEEEEEEeCccceeEEEEEcCccc
Confidence 3588999999999875321 22 2110001111 000 0122 2233 367777 89999999999888
Q ss_pred ccCCCeEEEEeeCCC
Q 029432 122 CQKKQKLHITVGNVS 136 (193)
Q Consensus 122 C~~GmKl~I~V~~~~ 136 (193)
=..||.-.+.|....
T Consensus 112 ~~~Gl~G~liV~~~~ 126 (534)
T 1zpu_A 112 YEDGMKGLFIIKDDS 126 (534)
T ss_dssp GGGTCEEEEEEECTT
T ss_pred ccCcceeeEEeCCCC
Confidence 889999999998653
No 69
>3g5w_A Multicopper oxidase type 1; two domain, laccase, nitrifier, metal B protein; 1.90A {Nitrosomonas europaea}
Probab=42.12 E-value=24 Score=29.90 Aligned_cols=76 Identities=11% Similarity=0.084 Sum_probs=43.2
Q ss_pred CCeeeeCCEEEEEeCCC---CCeEEEE----cc-cCCCCC-C-CCCCceeccCCc---eEEEecccccEEEEcCCCCc-c
Q 029432 57 YHTFAIGDSLLFLYPPS---QDSVIQV----TA-QSYDSC-K-LKDPILYMNNGN---SLFNITKEGNFYFTSGEPGH-C 122 (193)
Q Consensus 57 ~~~F~vGD~LvF~y~~~---~hsV~~V----~~-~~Y~~C-~-~s~pi~~~~~G~---~~v~L~~~G~~YFicg~~gH-C 122 (193)
..+++.||+|++++.+. .|++.-- .. ...|.= . ...++ ..|. ..|+.+++|++||-|..... .
T Consensus 35 ~i~~~~Gd~v~v~~~N~l~~~~siH~HG~~~~~~~~~DG~p~~t~~~i---~PG~~~~y~f~~~~~Gt~wYH~H~~~~~~ 111 (318)
T 3g5w_A 35 LIHVMEGDDVTVNVTNMTTLPHTIHWHGMLQRGTWQSDGVPHATQHAI---EPGDTFTYKFKAEPAGTMWYHCHVNVNEH 111 (318)
T ss_dssp EEEEETTCEEEEEEEECSSSCBCCEEETCCCTTCGGGSCCBTTTBCCB---CTTCEEEEEEECCSCEEEEEECCSSHHHH
T ss_pred eEEEeCCCEEEEEEEeCCCCceeEEecCcCCCCCcccCCCcccccccC---CCCCEEEEEEEcCCCEEEEEEccCChhhh
Confidence 35889999999988642 2333221 00 011110 0 00111 2333 26778899999999987432 1
Q ss_pred --cCCCeEEEEeeCC
Q 029432 123 --QKKQKLHITVGNV 135 (193)
Q Consensus 123 --~~GmKl~I~V~~~ 135 (193)
..||.-.+.|...
T Consensus 112 ~~~~Gl~G~lIV~~~ 126 (318)
T 3g5w_A 112 VTMRGMWGPLIVEPK 126 (318)
T ss_dssp HHHSCCEEEEEEECS
T ss_pred hccCCCEEEEEEcCC
Confidence 2699888888754
No 70
>1cyx_A CYOA; electron transport; 2.30A {Escherichia coli} SCOP: b.6.1.2 PDB: 1cyw_A
Probab=42.07 E-value=22 Score=29.10 Aligned_cols=29 Identities=14% Similarity=0.169 Sum_probs=23.5
Q ss_pred EEEecccccEEEEcCCCCcccC---CCeEEEEee
Q 029432 103 LFNITKEGNFYFTSGEPGHCQK---KQKLHITVG 133 (193)
Q Consensus 103 ~v~L~~~G~~YFicg~~gHC~~---GmKl~I~V~ 133 (193)
.++.+++|.||..|.. .|.. .|++.|.|.
T Consensus 84 ~~~~~~pG~y~g~CsE--~CG~~Hs~M~~~v~vv 115 (205)
T 1cyx_A 84 HLIANEPGTYDGICAE--ICGPGHSGMKFKAIAT 115 (205)
T ss_dssp EECCSSSEEEEEEECS--CCSTTSTTCCEEEEEE
T ss_pred EEEeCCCeEEEEEccc--ccccchhhceEEEEEE
Confidence 4667899999999974 5655 499999988
No 71
>1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-], oxidoreductase; 1.95A {Neisseria gonorrhoeae} SCOP: b.6.1.3 b.6.1.3 PDB: 1kbw_A
Probab=40.93 E-value=22 Score=30.12 Aligned_cols=33 Identities=15% Similarity=0.174 Sum_probs=28.0
Q ss_pred EEEecccccEEEEcCCCCcc-cCCCeEEEEeeCC
Q 029432 103 LFNITKEGNFYFTSGEPGHC-QKKQKLHITVGNV 135 (193)
Q Consensus 103 ~v~L~~~G~~YFicg~~gHC-~~GmKl~I~V~~~ 135 (193)
.|+.+.+|.|+|.|-...|| +.||.-.+.|...
T Consensus 275 ~v~~~~pG~y~l~~h~~~~~~~~g~~a~l~~~g~ 308 (327)
T 1kbv_A 275 EFKVDIPGNYTLVDHSIFRAFNKGALGQLKVEGA 308 (327)
T ss_dssp EEEECSCEEEEEEESSTHHHHHSSCEEEEEEESC
T ss_pred EEEeCCCeEEEEEeccccccccCCcEEEEEECCC
Confidence 56677899999999999998 8899888888754
No 72
>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: b.6.1.2 f.17.2.1 PDB: 3dtu_B* 3fye_B* 3fyi_B* 3omi_B* 3om3_B* 3oma_B* 3omn_B* 1m56_B* 1m57_B*
Probab=40.87 E-value=24 Score=29.60 Aligned_cols=30 Identities=23% Similarity=0.429 Sum_probs=24.4
Q ss_pred EEEecccccEEEEcCCCCcccCC---CeEEEEeeC
Q 029432 103 LFNITKEGNFYFTSGEPGHCQKK---QKLHITVGN 134 (193)
Q Consensus 103 ~v~L~~~G~~YFicg~~gHC~~G---mKl~I~V~~ 134 (193)
.++.+++|.||..|.. -|..| |++.|.|.+
T Consensus 214 ~~~~~~~G~y~g~Cse--~CG~~H~~M~~~v~vv~ 246 (262)
T 2gsm_B 214 WFRAEREGIFFGQCSE--LCGISHAYMPITVKVVS 246 (262)
T ss_dssp EEECCSCEEEEECCCS--CCSTTGGGCCEEEEEEC
T ss_pred EEecCCcEEEEEEChH--hcccCcccCeEEEEEEc
Confidence 5778999999999984 66665 899888875
No 73
>3sqr_A Laccase; multicopper oxidase, glycosylation, oxidoreductase; HET: NAG BMA MAN; 1.67A {Botrytis aclada}
Probab=39.69 E-value=41 Score=31.24 Aligned_cols=33 Identities=12% Similarity=0.100 Sum_probs=28.6
Q ss_pred EEEecccccEEEEcCCCCcccCCCeEEEEeeCC
Q 029432 103 LFNITKEGNFYFTSGEPGHCQKKQKLHITVGNV 135 (193)
Q Consensus 103 ~v~L~~~G~~YFicg~~gHC~~GmKl~I~V~~~ 135 (193)
+|+++++|+|||=|-...+=..|+.-.+.|...
T Consensus 156 ~f~~~q~GT~WYHsH~~~q~~~GL~G~lIV~~p 188 (580)
T 3sqr_A 156 KFQVTQYGTTWYHSHFSLQYGDGLFGPLIINGP 188 (580)
T ss_dssp EEECCCCEEEEEEECSTTGGGGTCEEEEEEECC
T ss_pred EEECCCCcceEEeecccccccCcCEEEEEeeCc
Confidence 678889999999999888888899988888754
No 74
>3iuw_A Activating signal cointegrator; NP_814290.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 1.58A {Enterococcus faecalis V583}
Probab=39.65 E-value=12 Score=26.47 Aligned_cols=16 Identities=31% Similarity=0.654 Sum_probs=12.3
Q ss_pred CeeeeCCEEEEE-eCCC
Q 029432 58 HTFAIGDSLLFL-YPPS 73 (193)
Q Consensus 58 ~~F~vGD~LvF~-y~~~ 73 (193)
+.|++||.|+|+ |..+
T Consensus 36 r~~~vGD~l~l~E~~~g 52 (83)
T 3iuw_A 36 RNFQVGDILILEEYMNG 52 (83)
T ss_dssp SCCCTTCEEEEEEEETT
T ss_pred cCCCCCCEEEEEEccCC
Confidence 459999999995 6543
No 75
>1aoz_A Ascorbate oxidase; oxidoreductase(oxygen acceptor); HET: NAG; 1.90A {Cucurbita pepo var} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1aso_A* 1asp_A* 1asq_A*
Probab=39.40 E-value=38 Score=30.80 Aligned_cols=77 Identities=14% Similarity=0.136 Sum_probs=48.2
Q ss_pred CCeeeeCCEEEEEeCCCC----CeEEE----EcccC-CCC-CCC-CCCceeccCCc---eEEEecccccEEEEcCCCCcc
Q 029432 57 YHTFAIGDSLLFLYPPSQ----DSVIQ----VTAQS-YDS-CKL-KDPILYMNNGN---SLFNITKEGNFYFTSGEPGHC 122 (193)
Q Consensus 57 ~~~F~vGD~LvF~y~~~~----hsV~~----V~~~~-Y~~-C~~-s~pi~~~~~G~---~~v~L~~~G~~YFicg~~gHC 122 (193)
..+++.||+|+.++.+.- +++.- +..+. .|. -.. ..+| ..|. ..|+++.+|+|||=|-...+=
T Consensus 35 ~I~~~~GD~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~~vtq~~I---~PG~s~tY~f~~~~~GT~wYHsH~~~q~ 111 (552)
T 1aoz_A 35 TIRANAGDSVVVELTNKLHTEGVVIHWHGILQRGTPWADGTASISQCAI---NPGETFFYNFTVDNPGTFFYHGHLGMQR 111 (552)
T ss_dssp CEEEETTCEEEEEEEECCSSCCBCEEEETCCCTTCGGGSCCBTTTBCCB---CTTCEEEEEEECCSCEEEEEEECSTTTG
T ss_pred cEEEeCCCEEEEEEEeCCCCCCeeEEeCCCccCCCcccCCCcccccCCc---CCCCeEEEEEECCCCEEEEEEECchhHH
Confidence 458899999999886432 23321 11111 111 000 0122 2233 367788999999999988888
Q ss_pred cCCCeEEEEeeCCC
Q 029432 123 QKKQKLHITVGNVS 136 (193)
Q Consensus 123 ~~GmKl~I~V~~~~ 136 (193)
..||--.+.|....
T Consensus 112 ~~Gl~G~liV~~~~ 125 (552)
T 1aoz_A 112 SAGLYGSLIVDPPQ 125 (552)
T ss_dssp GGTCEEEEEEECCT
T ss_pred hccCeeeEEEeCCc
Confidence 88999999998753
No 76
>1v54_B Cytochrome C oxidase polypeptide II; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: b.6.1.2 f.17.2.1 PDB: 1oco_B* 1occ_B* 1ocz_B* 1ocr_B* 1v55_B* 2dyr_B* 2dys_B* 2eij_B* 2eik_B* 2eil_B* 2eim_B* 2ein_B* 2occ_B* 2y69_B* 2ybb_M* 2zxw_B* 3abk_B* 3abl_B* 3abm_B* 3ag1_B* ...
Probab=39.00 E-value=22 Score=29.18 Aligned_cols=30 Identities=13% Similarity=0.274 Sum_probs=24.2
Q ss_pred EEEecccccEEEEcCCCCcccCC---CeEEEEeeC
Q 029432 103 LFNITKEGNFYFTSGEPGHCQKK---QKLHITVGN 134 (193)
Q Consensus 103 ~v~L~~~G~~YFicg~~gHC~~G---mKl~I~V~~ 134 (193)
.++.+++|.||..|.. -|..| |++.|.|.+
T Consensus 183 ~~~~~~~G~y~g~Cse--~CG~~Hs~M~~~v~vv~ 215 (227)
T 1v54_B 183 TLMSSRPGLYYGQCSE--ICGSNHSFMPIVLELVP 215 (227)
T ss_dssp EECCSSCEEEEECCCS--CCSTTGGGCCEEEEEEC
T ss_pred EEecCCcEEEEEEehh--hcccccccCeEEEEEEc
Confidence 5667899999999974 67765 888888874
No 77
>2bw4_A Copper-containing nitrite reductase; oxidoreductase, denitrification, catalysis, enzyme mechanism, nitrate assimilation; 0.90A {Achromobacter cycloclastes} SCOP: b.6.1.3 b.6.1.3 PDB: 1nib_A 1nia_A 1nid_A 1nie_A 1nic_A 1nif_A 2bw5_A 2bwd_A 2bwi_A 2nrd_A 2y1a_A 1kcb_A 1rzp_A* 1rzq_A 2avf_A 1as6_A 1aq8_A 1as7_A 1as8_A 2afn_A ...
Probab=37.23 E-value=32 Score=28.97 Aligned_cols=35 Identities=9% Similarity=0.113 Sum_probs=28.1
Q ss_pred EEEecccccEEEEcCCCC-cccCCCeEEEEeeCCCC
Q 029432 103 LFNITKEGNFYFTSGEPG-HCQKKQKLHITVGNVSA 137 (193)
Q Consensus 103 ~v~L~~~G~~YFicg~~g-HC~~GmKl~I~V~~~~~ 137 (193)
.|+.+.+|.|+|.|.... |=+.||.-.+.|.....
T Consensus 292 ~v~~~~pG~y~~~~h~~~~h~~~Gm~~~~~V~~~~~ 327 (340)
T 2bw4_A 292 FYTFRQPGVYAYVNHNLIEAFELGAAGHFKVTGEWN 327 (340)
T ss_dssp EEECCSCEEEEEEESSHHHHHTTSCEEEEEEESCCC
T ss_pred EEECCCCeeeEEEcCchHHHHhCCCEEEEEECCCCc
Confidence 466788999999999874 66889999999986543
No 78
>3t6v_A Laccase; beta barrel, oxidoreductase; HET: CBS; 2.00A {Steccherinum ochraceum} PDB: 3t6w_A* 3t6x_A* 3t6z_A* 3t71_A*
Probab=37.05 E-value=39 Score=30.59 Aligned_cols=34 Identities=15% Similarity=0.213 Sum_probs=28.5
Q ss_pred EEEe-cccccEEEEcCCCCcccCCCeEEEEeeCCC
Q 029432 103 LFNI-TKEGNFYFTSGEPGHCQKKQKLHITVGNVS 136 (193)
Q Consensus 103 ~v~L-~~~G~~YFicg~~gHC~~GmKl~I~V~~~~ 136 (193)
.|++ +++|++||=|-...+=..|+.-.+.|....
T Consensus 97 ~f~~~~~~GT~wYHsH~~~q~~~GL~G~lIV~~~~ 131 (495)
T 3t6v_A 97 NFNVPGMAGTYWYHSHLTTQYCDGLRGPFVVYDPN 131 (495)
T ss_dssp EEECTTCCEEEEEEECSTTGGGGTCEEEEEEECTT
T ss_pred EEEeCCCCceeeeeccchhHHhcCceEEEEEcCcc
Confidence 6777 679999999998888888999999997543
No 79
>3pxl_A Laccase; 4-copper protein, metal-binding, oxidoreductase, type-2 Cu-D; HET: NAG BMA MAN; 1.20A {Trametes hirsuta} PDB: 3fpx_A* 3v9c_A* 3div_A* 2h5u_A* 2xyb_A* 1kya_A* 1gyc_A* 2qt6_A* 2hrg_A* 2hrh_A* 4a2f_A* 2vdz_A* 4a2d_A* 4a2e_A* 4a2g_A* 4a2h_A* 2ve0_A* 2vds_A* 2hzh_A* 3kw7_A*
Probab=35.48 E-value=42 Score=30.38 Aligned_cols=34 Identities=15% Similarity=0.233 Sum_probs=28.4
Q ss_pred EEEe-cccccEEEEcCCCCcccCCCeEEEEeeCCC
Q 029432 103 LFNI-TKEGNFYFTSGEPGHCQKKQKLHITVGNVS 136 (193)
Q Consensus 103 ~v~L-~~~G~~YFicg~~gHC~~GmKl~I~V~~~~ 136 (193)
.|++ +.+|+|||=|-...+=..|+.-.+.|....
T Consensus 96 ~f~~~~~~GT~wYHsH~~~q~~~GL~G~lIV~~~~ 130 (499)
T 3pxl_A 96 DFQVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPN 130 (499)
T ss_dssp EEECSSCCEEEEEEECSTTGGGGTCEEEEEEECTT
T ss_pred EEEcCCCCceeeeeccchhHHhccceeEEEEcCCc
Confidence 6777 679999999998888888999999997543
No 80
>3tas_A Small laccase, multi-copper oxidase; two-domain laccase, oxidoreductase, secreted; HET: PG4; 2.30A {Streptomyces viridosporus} PDB: 3tbb_A 3tbc_A*
Probab=34.40 E-value=56 Score=27.37 Aligned_cols=31 Identities=10% Similarity=0.086 Sum_probs=27.9
Q ss_pred ccccEEEEcCCCCcccCCCeEEEEeeCCCCC
Q 029432 108 KEGNFYFTSGEPGHCQKKQKLHITVGNVSAE 138 (193)
Q Consensus 108 ~~G~~YFicg~~gHC~~GmKl~I~V~~~~~~ 138 (193)
.||.+.|-|-+..|=++||.-.+.|......
T Consensus 245 nPG~w~~HCHi~~H~~~GM~~~f~V~~~d~~ 275 (313)
T 3tas_A 245 GAGAWMYHCHVQSHSDMGMVGLFLVKKPDGT 275 (313)
T ss_dssp CSEEEEEEECSHHHHHTTCEEEEEEECTTCC
T ss_pred CCEeEEEEeCChHHHHCCCeEEEEEECCCCC
Confidence 5899999999999999999999999887664
No 81
>2hzs_I RNA polymerase II mediator complex subunit 8; beta barrel, channel, helix, transcription; 2.70A {Saccharomyces cerevisiae}
Probab=33.55 E-value=0.58 Score=26.00 Aligned_cols=19 Identities=21% Similarity=0.452 Sum_probs=14.3
Q ss_pred CCeeeeCCEEEEEeCCCCC
Q 029432 57 YHTFAIGDSLLFLYPPSQD 75 (193)
Q Consensus 57 ~~~F~vGD~LvF~y~~~~h 75 (193)
++.|.|.|.|-|.|....|
T Consensus 4 skpfnvddvlkftftgekh 22 (27)
T 2hzs_I 4 SKPFNVDDVLKFTFTGEKH 22 (27)
T ss_dssp --CCCHHHHHHHHHHCCCC
T ss_pred CCCcChhheEEEEeccccc
Confidence 4789999999999986554
No 82
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}
Probab=33.44 E-value=53 Score=22.22 Aligned_cols=46 Identities=15% Similarity=0.276 Sum_probs=29.1
Q ss_pred CCeeeeCCEEEEEeCCCCCeEEEEcccCCCCCCCCCCc--eeccCCceEEEec
Q 029432 57 YHTFAIGDSLLFLYPPSQDSVIQVTAQSYDSCKLKDPI--LYMNNGNSLFNIT 107 (193)
Q Consensus 57 ~~~F~vGD~LvF~y~~~~hsV~~V~~~~Y~~C~~s~pi--~~~~~G~~~v~L~ 107 (193)
..+|.+||++.=+| +|.+.-+++.-.+++ ..+++ -.|.+ .+..+|.
T Consensus 7 ~~~~~vgd~VmaRW-~Gd~~yYparI~Si~---s~~~~Y~V~fKd-gT~e~L~ 54 (66)
T 2l8d_A 7 NRKYADGEVVMGRW-PGSVLYYEVQVTSYD---DASHLYTVKYKD-GTELALK 54 (66)
T ss_dssp SSSSCSSCEEEEEC-TTSSCEEEEEEEEEE---TTTTEEEEEETT-SCEEEEE
T ss_pred ceEeecCCEEEEEc-CCCccceEEEEEEec---cCCceEEEEecC-CCEEeec
Confidence 35899999999999 777777766434444 44554 23556 4444443
No 83
>2z0t_A Putative uncharacterized protein PH0355; alpha/beta protein, RNA binding protein, structural genomics, NPPSFA; 1.80A {Pyrococcus horikoshii} PDB: 1s04_A
Probab=32.64 E-value=15 Score=27.07 Aligned_cols=11 Identities=27% Similarity=0.628 Sum_probs=10.0
Q ss_pred CeeeeCCEEEE
Q 029432 58 HTFAIGDSLLF 68 (193)
Q Consensus 58 ~~F~vGD~LvF 68 (193)
+.+++||.|+|
T Consensus 32 ~~ikvGD~I~f 42 (109)
T 2z0t_A 32 RQIKPGDIIIF 42 (109)
T ss_dssp GGCCTTCEEEE
T ss_pred hcCCCCCEEEE
Confidence 47899999999
No 84
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=32.20 E-value=34 Score=23.46 Aligned_cols=19 Identities=26% Similarity=0.473 Sum_probs=15.2
Q ss_pred cCCeeeeCCEEEEEeCCCC
Q 029432 56 KYHTFAIGDSLLFLYPPSQ 74 (193)
Q Consensus 56 ~~~~F~vGD~LvF~y~~~~ 74 (193)
.+++|.+||.|.|--+.+.
T Consensus 26 ~rN~f~~GD~iEi~~P~g~ 44 (89)
T 4he6_A 26 QRNHFRPGDEVEFFGPEIE 44 (89)
T ss_dssp ESSCBCTTCEEEEESTTSC
T ss_pred EcCCcCCCCEEEEEcCCCC
Confidence 3779999999998866553
No 85
>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis}
Probab=31.95 E-value=36 Score=29.75 Aligned_cols=35 Identities=14% Similarity=0.155 Sum_probs=29.0
Q ss_pred EEEecccccEEEEcCCCCcc-cCCCeEEEEeeCCCC
Q 029432 103 LFNITKEGNFYFTSGEPGHC-QKKQKLHITVGNVSA 137 (193)
Q Consensus 103 ~v~L~~~G~~YFicg~~gHC-~~GmKl~I~V~~~~~ 137 (193)
.|+.+++|.|+|.|....|+ ..||...+.|.....
T Consensus 265 ~v~~~~~G~y~~~~~~~~~~~~~g~~a~l~v~~~~~ 300 (442)
T 2zoo_A 265 EFKVEVPGTFILVDHSIFRAFNKGALAMLKVEGPDD 300 (442)
T ss_dssp EEECCSCEEEEEEESSTHHHHTTSCEEEEEEESCCC
T ss_pred EEEcCCCCeEEEEecccccccccCceEEEEecCCCC
Confidence 56778899999999999998 789988888876543
No 86
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=29.37 E-value=69 Score=21.75 Aligned_cols=46 Identities=15% Similarity=0.216 Sum_probs=29.1
Q ss_pred CCeeeeCCEEEEEeCCCCCeEEEEcccCCCCCCCCCCc--eeccCCceEEEec
Q 029432 57 YHTFAIGDSLLFLYPPSQDSVIQVTAQSYDSCKLKDPI--LYMNNGNSLFNIT 107 (193)
Q Consensus 57 ~~~F~vGD~LvF~y~~~~hsV~~V~~~~Y~~C~~s~pi--~~~~~G~~~v~L~ 107 (193)
..+|.+||++.=+|. |.+.-+++.-.+++ ..+++ -.|.+ .+..+|.
T Consensus 10 ~~~f~vgd~VmaRW~-Gd~~yYparItSit---s~~~~Y~VkfKd-gT~e~L~ 57 (68)
T 2dig_A 10 SRKFADGEVVRGRWP-GSSLYYEVEILSHD---STSQLYTVKYKD-GTELELK 57 (68)
T ss_dssp CCSSCSSCEEEEECT-TTCCEEEEEEEEEE---TTTTEEEEECTT-SCEEEEE
T ss_pred ceEeecCCEEEEEcc-CCccceEEEEEEec---cCCceEEEEecC-CCEEEec
Confidence 358999999999998 77777766433444 44554 23556 4444554
No 87
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=27.99 E-value=26 Score=25.08 Aligned_cols=29 Identities=17% Similarity=0.069 Sum_probs=23.7
Q ss_pred EEEecCCCCCCCCCCCCcccccccccCCeeeeCCEEEEE
Q 029432 31 QYKVGDLDGWGIPTSANPLVYAKWSKYHTFAIGDSLLFL 69 (193)
Q Consensus 31 ~~~VG~~~GW~~~~~~~~~~Y~~WA~~~~F~vGD~LvF~ 69 (193)
+.++||+.| .+ ..+-|-.. |+.||.+.++
T Consensus 41 ~~~l~DeTG-~I-------~~tlW~~~--l~~Gdvv~i~ 69 (106)
T 2k75_A 41 QGYIEDDTA-RI-------RISSFGKQ--LQDSDVVRID 69 (106)
T ss_dssp EEEEECSSC-EE-------EEEEESSC--CCTTEEEEEE
T ss_pred EEEEEcCCC-eE-------EEEEEcCc--cCCCCEEEEE
Confidence 567899888 33 47899887 9999999988
No 88
>1sdd_B Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3 b.18.1.2 b.18.1.2
Probab=27.91 E-value=34 Score=31.65 Aligned_cols=32 Identities=6% Similarity=0.036 Sum_probs=28.2
Q ss_pred EEEecccccEEEEcCCCCcccCCCeEEEEeeC
Q 029432 103 LFNITKEGNFYFTSGEPGHCQKKQKLHITVGN 134 (193)
Q Consensus 103 ~v~L~~~G~~YFicg~~gHC~~GmKl~I~V~~ 134 (193)
.|+.+.+|.+.|-|-+..|-..||...+.|..
T Consensus 296 ~~~~~~pG~w~~hch~~~h~~~Gm~~~~~V~~ 327 (647)
T 1sdd_B 296 EMKASKPGWWLLDTEVGEIQRAGMQTPFLIVD 327 (647)
T ss_dssp EEECCSSEEEEEECCCHHHHTTTCEEEEEEEC
T ss_pred EEEeccceEeecccCcccccccccccceeeec
Confidence 45667899999999999999999999999964
No 89
>2uxt_A Protein SUFI, SUFI; oxidoreductase, periplasmic, cupredoxin-like, FTS mutant suppressor; 1.90A {Escherichia coli} PDB: 2uxv_A
Probab=27.88 E-value=31 Score=30.64 Aligned_cols=70 Identities=11% Similarity=0.145 Sum_probs=45.5
Q ss_pred CeeeeCCEEEEEeCCC---CCeEEE----EcccCCC---CCCCCCCceeccCCc---eEEEecc-cccEEEEcCC----C
Q 029432 58 HTFAIGDSLLFLYPPS---QDSVIQ----VTAQSYD---SCKLKDPILYMNNGN---SLFNITK-EGNFYFTSGE----P 119 (193)
Q Consensus 58 ~~F~vGD~LvF~y~~~---~hsV~~----V~~~~Y~---~C~~s~pi~~~~~G~---~~v~L~~-~G~~YFicg~----~ 119 (193)
.+++.||+|+.++.+. .+++.- +..+ .| .|- ...|. ..|+++. +|++||=|-. .
T Consensus 52 i~~~~Gd~v~v~~~N~l~~~tsiHwHG~~~~~~-~DG~~~~~-------i~PG~~~~Y~f~~~~~~GT~wYH~H~~~~t~ 123 (451)
T 2uxt_A 52 IRVWKGDDVKLIYSNRLTENVSMTVAGLQVPGP-LMGGPARM-------MSPNADWAPVLPIRQNAATLWYHANTPNRTA 123 (451)
T ss_dssp EEEETTCEEEEEEEECSSSCBCEEEETCCCCGG-GSCSGGGC-------BCTTCEECCEEECCSCSEEEEEEECCTTTHH
T ss_pred EEEeCCCEEEEEEEECCCCCccEEECCccCCCC-CCCCCcCc-------CCCCCeEEEEEEcCCCCcceEEecCCCCchh
Confidence 4789999999998743 333321 2111 11 122 12333 3788886 9999999987 3
Q ss_pred CcccCCCeEEEEeeCC
Q 029432 120 GHCQKKQKLHITVGNV 135 (193)
Q Consensus 120 gHC~~GmKl~I~V~~~ 135 (193)
.|=..||--.+.|...
T Consensus 124 ~q~~~Gl~G~liV~~~ 139 (451)
T 2uxt_A 124 QQVYNGLAGMWLVEDE 139 (451)
T ss_dssp HHHHTTCEEEEEEECH
T ss_pred hhHhhcceEEEEEecC
Confidence 4667899999998864
No 90
>1fft_B Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane protein, oxidoreductase; HET: HEM HEO; 3.50A {Escherichia coli} SCOP: b.6.1.2 f.17.2.1
Probab=27.58 E-value=31 Score=29.81 Aligned_cols=67 Identities=10% Similarity=0.036 Sum_probs=40.9
Q ss_pred CCeeeeCCEEEEEeCCC--CCeEEEEcccCCCCCCCCCCcee-ccCCc---eEEEecccccEEEEcCCCCcccCC---Ce
Q 029432 57 YHTFAIGDSLLFLYPPS--QDSVIQVTAQSYDSCKLKDPILY-MNNGN---SLFNITKEGNFYFTSGEPGHCQKK---QK 127 (193)
Q Consensus 57 ~~~F~vGD~LvF~y~~~--~hsV~~V~~~~Y~~C~~s~pi~~-~~~G~---~~v~L~~~G~~YFicg~~gHC~~G---mK 127 (193)
...+-+|..+.|+-+.. -|+... . .-.++. --.|. ..++.+++|.||..|.. .|..| |+
T Consensus 152 ~l~lP~g~~V~~~lTS~DViHsf~I-P---------~lg~k~DaiPGr~n~~~~~~~~~G~y~g~CsE--~CG~~Hs~M~ 219 (315)
T 1fft_B 152 EIAFPANTPVYFKVTSNSVMNSFFI-P---------RLGSQIYAMAGMQTRLHLIANEPGTYDGISAS--YSGPGFSGMK 219 (315)
T ss_dssp BCCCCSSSEEEEEECBSSSCEEEEE-G---------GGTEEEEECBTSCEEEEEECCSCBCCEEBCCS--CCSTTTTTCC
T ss_pred eEEEeCCCEEEEEEEeCCccceeee-c---------ccCcEEeecCCcceeeEEecCCCeEEEEeccc--cchhhHHhcc
Confidence 34778888888888742 122221 1 001111 11232 25778999999999974 67664 99
Q ss_pred EEEEee-CC
Q 029432 128 LHITVG-NV 135 (193)
Q Consensus 128 l~I~V~-~~ 135 (193)
+.|.|. +.
T Consensus 220 ~~v~vv~~~ 228 (315)
T 1fft_B 220 FKAIATPDR 228 (315)
T ss_dssp EECCBCSST
T ss_pred ceEEEecCH
Confidence 998887 44
No 91
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=27.42 E-value=25 Score=24.17 Aligned_cols=16 Identities=19% Similarity=0.389 Sum_probs=13.7
Q ss_pred CCeeeeCCEEEEEeCC
Q 029432 57 YHTFAIGDSLLFLYPP 72 (193)
Q Consensus 57 ~~~F~vGD~LvF~y~~ 72 (193)
-..+++||.+.|.+..
T Consensus 51 l~~lk~Gd~V~F~~~~ 66 (80)
T 2qcp_X 51 MSEIKTGDKVAFNFVQ 66 (80)
T ss_dssp ECCCCTTCEEEEEEEE
T ss_pred hhcCCCCCEEEEEEEE
Confidence 4579999999999974
No 92
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=27.23 E-value=25 Score=24.64 Aligned_cols=20 Identities=20% Similarity=0.335 Sum_probs=15.6
Q ss_pred ccccCCeeeeCCEEEEEeCC
Q 029432 53 KWSKYHTFAIGDSLLFLYPP 72 (193)
Q Consensus 53 ~WA~~~~F~vGD~LvF~y~~ 72 (193)
+.+.-..+++||.+.|.|..
T Consensus 55 ~~~~l~~lk~Gd~V~F~~~~ 74 (88)
T 2vb2_X 55 PQTKMSEIKTGDKVAFNFVQ 74 (88)
T ss_dssp TTCEECCCCTTCEEEEEEEE
T ss_pred ChhhhhcCCCCCEEEEEEEE
Confidence 34445689999999999974
No 93
>2r7e_B Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, ACU blood coagulation, disease mutation, glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_B*
Probab=24.71 E-value=12 Score=35.99 Aligned_cols=73 Identities=11% Similarity=-0.048 Sum_probs=46.6
Q ss_pred CCeeeeCCEEEEEeCCC-----CCeEE------EE-cccCCCCCCCCCCceeccCCce--EEEecccccEEEEcCCCCcc
Q 029432 57 YHTFAIGDSLLFLYPPS-----QDSVI------QV-TAQSYDSCKLKDPILYMNNGNS--LFNITKEGNFYFTSGEPGHC 122 (193)
Q Consensus 57 ~~~F~vGD~LvF~y~~~-----~hsV~------~V-~~~~Y~~C~~s~pi~~~~~G~~--~v~L~~~G~~YFicg~~gHC 122 (193)
..+++.||++.+...+. .|.+. +| ....+ ..+.+.....+.. .|+.+.+|.+.|-|-...|-
T Consensus 369 ~l~v~~Ge~vr~rliN~g~~~~~H~fHlhGh~f~Vv~~dg~----~~Dtv~l~Pg~~~~v~~~ad~pG~w~~hcH~~~H~ 444 (770)
T 2r7e_B 369 GLVMAQDQRIRWYLLSMGSNENIHSIHFSGHVFTVRKKEEY----KMALYNLYPGVFETVEMLPSKAGIWRVECLIGEHL 444 (770)
T ss_dssp CCCCCSSSCEEEECCCCCSSSCCCEEEBSSCCEECCSSSCC----EESEEECCTTCCCEEEECCSSCBCCCBCCCSHHHH
T ss_pred CeEEeCCCEEEEEEEeCCCCcceEEEEEcCCEEEEEecCCc----eeeEEEECCCeEEEEEEEeCCCCceEEEecccccc
Confidence 35789999999998642 34433 22 11111 1111222223333 34557899999999999999
Q ss_pred cCCCeEEEEee
Q 029432 123 QKKQKLHITVG 133 (193)
Q Consensus 123 ~~GmKl~I~V~ 133 (193)
..||+..+.|.
T Consensus 445 ~~GM~~~~~V~ 455 (770)
T 2r7e_B 445 HAGMSTLFLVY 455 (770)
T ss_dssp TTBCCCCCCBC
T ss_pred ccccccccccc
Confidence 99999988884
No 94
>3kw8_A Laccase, putative copper oxidase; two-domain laccase, oxidoreductase, multicopper blue protein; HET: PG4 PGE; 2.29A {Streptomyces coelicolor} PDB: 4gxf_A* 4gy4_A*
Probab=24.68 E-value=1.1e+02 Score=24.95 Aligned_cols=28 Identities=11% Similarity=0.083 Sum_probs=21.4
Q ss_pred cccEEEEcCCCC------cccCCCeEEEEeeCCC
Q 029432 109 EGNFYFTSGEPG------HCQKKQKLHITVGNVS 136 (193)
Q Consensus 109 ~G~~YFicg~~g------HC~~GmKl~I~V~~~~ 136 (193)
.|++||-|-..+ |=..||--.+.|....
T Consensus 109 ~gt~~YH~h~~~~~~~~~~~~~Gl~G~liV~~~~ 142 (276)
T 3kw8_A 109 AGYWHYHDHVVGTEHGTGGIRNGLYGPVIVRRKG 142 (276)
T ss_dssp CEEEEEECSSSSSTTCHHHHHHTCEEEEEEECTT
T ss_pred CEEEEEecCccccccchhhhhCccEEEEEEecCC
Confidence 478889998754 4567999998888654
No 95
>1v10_A Laccase; multicopper blue oxidase, oxidase; 1.7A {Rigidoporus lignosus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3
Probab=24.05 E-value=71 Score=28.80 Aligned_cols=34 Identities=12% Similarity=0.178 Sum_probs=28.4
Q ss_pred EEEe-cccccEEEEcCCCCcccCCCeEEEEeeCCC
Q 029432 103 LFNI-TKEGNFYFTSGEPGHCQKKQKLHITVGNVS 136 (193)
Q Consensus 103 ~v~L-~~~G~~YFicg~~gHC~~GmKl~I~V~~~~ 136 (193)
.|++ +.+|+|||=|-...|=..||--.+.|....
T Consensus 117 ~f~~~~~~GT~wYH~H~~~q~~~Gl~G~liV~~~~ 151 (521)
T 1v10_A 117 DFVVPGQAGTYWYHSHLSTQYCDGLRGAFVVYDPN 151 (521)
T ss_dssp EEECTTCCEEEEEEECSTTGGGGTCEEEEEEECTT
T ss_pred EEecCCCCccEEEEeccCCchhcCceEEEEEcCCc
Confidence 5664 579999999999888889999999997643
No 96
>3t9w_A Small laccase, multi-copper oxidase; two-domain copper oxidase, Cu-binding, oxidoreducta; 1.50A {Amycolatopsis SP}
Probab=24.04 E-value=40 Score=28.19 Aligned_cols=31 Identities=13% Similarity=0.135 Sum_probs=27.4
Q ss_pred cccccEEEEcCCCCcccCCCeEEEEeeCCCC
Q 029432 107 TKEGNFYFTSGEPGHCQKKQKLHITVGNVSA 137 (193)
Q Consensus 107 ~~~G~~YFicg~~gHC~~GmKl~I~V~~~~~ 137 (193)
+.||.+.|-|-+..|=++||...+.|.....
T Consensus 260 dnPG~w~~HCHi~~H~~~GM~~~f~V~~~~~ 290 (299)
T 3t9w_A 260 VGPGMWMYHCHVQNHSDMGMAGMFLVRNADG 290 (299)
T ss_dssp TCSEEEEEEECSHHHHHTTCEEEEEEECTTS
T ss_pred CCCeeEEEEcCCHHHHhcCCeEEEEEECCCC
Confidence 3589999999999999999999999987654
No 97
>2l55_A SILB,silver efflux protein, MFP component of the components proton antiporter metal...; APO form, AG(I)-binding site; NMR {Cupriavidus metallidurans}
Probab=23.36 E-value=31 Score=23.86 Aligned_cols=21 Identities=14% Similarity=0.175 Sum_probs=16.1
Q ss_pred ccccCCeeeeCCEEEEEeCCC
Q 029432 53 KWSKYHTFAIGDSLLFLYPPS 73 (193)
Q Consensus 53 ~WA~~~~F~vGD~LvF~y~~~ 73 (193)
+.+.-..+++||.|.|.+...
T Consensus 41 ~~~~l~~lk~Gd~V~F~~~~~ 61 (82)
T 2l55_A 41 PAGLPQGLKAGDRVAFSFRLD 61 (82)
T ss_dssp TTCCCSSCSTTCEEEEEEEEE
T ss_pred ChhHhhcCCCCCEEEEEEEEC
Confidence 344456899999999999753
No 98
>2j5w_A Ceruloplasmin, ferroxidase; oxidoreductase, plasma protein, copper transport, copper, transport, polymorphism, glycoprotein, multi-copper oxidase; HET: NAG; 2.80A {Homo sapiens} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1kcw_A*
Probab=22.67 E-value=61 Score=32.17 Aligned_cols=76 Identities=7% Similarity=0.078 Sum_probs=49.5
Q ss_pred CCeeeeCCEEEEEeCC-C----CCeEEEEcccCCCCCCCCCCce----eccCCce---EEEecccccEEEEcCCCCcccC
Q 029432 57 YHTFAIGDSLLFLYPP-S----QDSVIQVTAQSYDSCKLKDPIL----YMNNGNS---LFNITKEGNFYFTSGEPGHCQK 124 (193)
Q Consensus 57 ~~~F~vGD~LvF~y~~-~----~hsV~~V~~~~Y~~C~~s~pi~----~~~~G~~---~v~L~~~G~~YFicg~~gHC~~ 124 (193)
..+++.|+++.|+.-+ + .|++. +..-.+. .+|.. ....|.. .|+.+++|.|+|.|-...|=+.
T Consensus 272 ~l~v~~Ge~vRlRliNag~~~~~~~~~-i~Gh~f~----v~p~~~dtv~I~pGer~dVlv~~~~pG~y~i~~h~~~h~~~ 346 (1065)
T 2j5w_A 272 GLSMCAEDRVKWYLFGMGNEVDVHAAF-FHGQALT----NKNYRIDTINLFPATLFDAYMVAQNPGEWMLSCQNLNHLKA 346 (1065)
T ss_dssp CCEEETTCEEEEEEEECSSTTCCEEEE-ETTCCEE----ETTEEESEEEECBTCEEEEEEECCSCEEEEEEECSHHHHHT
T ss_pred ceEECCCCEEEEEEEcCCcccceeEEE-EcCCEEE----ECCeeecEEEECCCcEEEEEEEeCCCeeEEEEecCcchhhC
Confidence 4588999999999864 2 23332 2222222 12211 1223332 5667789999999999999999
Q ss_pred CCeEEEEeeCCCC
Q 029432 125 KQKLHITVGNVSA 137 (193)
Q Consensus 125 GmKl~I~V~~~~~ 137 (193)
||...+.|.....
T Consensus 347 Gm~~~~~V~~~~~ 359 (1065)
T 2j5w_A 347 GLQAFFQVQECNK 359 (1065)
T ss_dssp TCEEEEEEECSCC
T ss_pred CCEEEEEEecCCC
Confidence 9999999986544
No 99
>1xne_A Hypothetical protein PF0469; GFT structural genomics, protein structure initiative, NESG, PFR14, alpha and beta protein; NMR {Pyrococcus furiosus} SCOP: b.122.1.6
Probab=22.34 E-value=29 Score=25.66 Aligned_cols=12 Identities=25% Similarity=0.551 Sum_probs=10.1
Q ss_pred CeeeeCCEEEEE
Q 029432 58 HTFAIGDSLLFL 69 (193)
Q Consensus 58 ~~F~vGD~LvF~ 69 (193)
+.+++||.|+|+
T Consensus 33 ~~i~vGD~I~f~ 44 (113)
T 1xne_A 33 KDIKRGDKIIFN 44 (113)
T ss_dssp TTCCTTCEEEET
T ss_pred hccCCCCEEEEc
Confidence 468999999993
No 100
>1sdd_A Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3
Probab=22.03 E-value=1.2e+02 Score=25.05 Aligned_cols=26 Identities=4% Similarity=-0.236 Sum_probs=20.6
Q ss_pred ccEEEEcCCCC--cccCCCeEEEEeeCC
Q 029432 110 GNFYFTSGEPG--HCQKKQKLHITVGNV 135 (193)
Q Consensus 110 G~~YFicg~~g--HC~~GmKl~I~V~~~ 135 (193)
|++||-|-... |-..|+.-.+.|...
T Consensus 140 GT~wYHsH~~~~~q~~~GL~G~liV~~~ 167 (306)
T 1sdd_A 140 LTHIYYSYVNLVEDFNSGLIGPLLICKK 167 (306)
T ss_dssp EEEEEECCSSSHHHHHTTCCEEEEEECT
T ss_pred eEEEEeccCCchhhhccCceEEEEEccC
Confidence 79999997654 557899888888754
No 101
>2r7e_B Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, ACU blood coagulation, disease mutation, glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_B*
Probab=21.57 E-value=60 Score=31.17 Aligned_cols=29 Identities=7% Similarity=-0.046 Sum_probs=24.1
Q ss_pred ccccEEEEcCCCC--cccCCCeEEEEeeCCC
Q 029432 108 KEGNFYFTSGEPG--HCQKKQKLHITVGNVS 136 (193)
Q Consensus 108 ~~G~~YFicg~~g--HC~~GmKl~I~V~~~~ 136 (193)
.+|++||-|.+.. |...||.-.+.|....
T Consensus 269 ~~Gt~wYHsh~~~~~q~~~GL~G~liV~~~~ 299 (770)
T 2r7e_B 269 DCKAWAYSSDVDLEKDVHSGLIGPLLVCHTN 299 (770)
T ss_dssp SEEEEEECCCSSSSHHHHTSCCEEEEEECST
T ss_pred CCeeEEeeccCCcHHHHhCCceeeEEECCCc
Confidence 6799999998876 7889999888887654
No 102
>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans}
Probab=20.99 E-value=83 Score=27.31 Aligned_cols=33 Identities=12% Similarity=0.193 Sum_probs=28.2
Q ss_pred EEEecccccEEEEcCCCCcccCCCeEEEEeeCC
Q 029432 103 LFNITKEGNFYFTSGEPGHCQKKQKLHITVGNV 135 (193)
Q Consensus 103 ~v~L~~~G~~YFicg~~gHC~~GmKl~I~V~~~ 135 (193)
.|..+.+|.++|-|-...|=..||...+.|...
T Consensus 402 ~~~~~~pG~~~~hch~~~h~~~Gm~~~~~v~~~ 434 (447)
T 2dv6_A 402 DFKIDRAGRYILVDHALSRLEHGLVGFLNVDGP 434 (447)
T ss_dssp EEECCSCEEEEEEESSGGGGGGTCCEEEEECSC
T ss_pred EEECCCCEEEEEEecCcCccccCCEEEEEEeCC
Confidence 456678999999999999988999999998754
No 103
>2z0b_A GDE5, KIAA1434, putative glycerophosphodiester phosphodiesterase; CBM20 domain, starch-binding, hydrolase, STR genomics, NPPSFA; 2.00A {Homo sapiens}
Probab=20.32 E-value=40 Score=25.04 Aligned_cols=43 Identities=19% Similarity=0.239 Sum_probs=30.8
Q ss_pred eeEEEecC---CCCCCCCCC--CCcc----cccccccCCeeeeCCEEEEEeC
Q 029432 29 CHQYKVGD---LDGWGIPTS--ANPL----VYAKWSKYHTFAIGDSLLFLYP 71 (193)
Q Consensus 29 A~~~~VG~---~~GW~~~~~--~~~~----~Y~~WA~~~~F~vGD~LvF~y~ 71 (193)
...|+||+ -..|+..-. -... .|..|.....+..|..+.|||-
T Consensus 23 e~v~vvGs~~~LG~W~p~~av~L~~~~~~~~~~~W~~~v~lp~~~~~eYKyv 74 (131)
T 2z0b_A 23 EVFAICGSCDALGNWNPQNAVALLPENDTGESMLWKATIVLSRGVSVQYRYF 74 (131)
T ss_dssp CEEEEEESSGGGTTTCGGGCEECEECCTTCCSSEEEEEEEECTTCCEEEEEE
T ss_pred CEEEEEeCCCcCCCCCccccccccccccCCCCCeEEEEEEcCCCCcEEEEEE
Confidence 46789998 346985210 0112 5889999889988999999994
Done!