BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029433
         (193 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2QU7|A Chain A, Crystal Structure Of A Putative Transcription Regulator
           From Staphylococcus Saprophyticus Subsp. Saprophyticus
 pdb|2QU7|B Chain B, Crystal Structure Of A Putative Transcription Regulator
           From Staphylococcus Saprophyticus Subsp. Saprophyticus
          Length = 288

 Score = 29.6 bits (65), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 58  KNFTRDRISIAFGDAYGNQIYAPRL 82
           K   +D I + F D+Y N+IY P+L
Sbjct: 211 KEIKKDVIIVGFDDSYWNEIYTPKL 235


>pdb|3DY5|A Chain A, Allene Oxide Synthase 8r-Lipoxygenase From Plexaura
           Homomalla
 pdb|3DY5|C Chain C, Allene Oxide Synthase 8r-Lipoxygenase From Plexaura
           Homomalla
          Length = 1066

 Score = 27.3 bits (59), Expect = 5.6,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 1/78 (1%)

Query: 44  NCTYLVVIKTSCDSKNFTRDRISIAFGDAYGNQIYAPRLDDPFTKTFQSCSSDGFQIDGP 103
           N  Y V ++T       T   I+I    A G   Y  +LD  F   F++ S + + + G 
Sbjct: 373 NAIYNVEVETGDREHAGTDATITIRITGAKGRTDYL-KLDKWFHNDFEAGSKEQYTVQGF 431

Query: 104 CATDICYVYLHRSGLDGW 121
              DI  + LH  G   W
Sbjct: 432 DVGDIQLIELHSDGGGYW 449


>pdb|2LA7|A Chain A, Nmr Structure Of The Protein Yp_557733.1 From Burkholderia
           Xenovorans
          Length = 145

 Score = 26.9 bits (58), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 13/54 (24%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 89  TFQSCSSDGFQIDGPCATDICYVYLHRSGLDGWEPESVKIISPNSSPVTYDFNT 142
           T  +C + G QI+G     + ++   R+G+    P+ ++++  N   +T+D +T
Sbjct: 93  TRMACMTPGGQIEGAYLNALTHI--DRTGVQMRAPQQMQLVLDNGDTLTFDRST 144


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.136    0.430 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,844,344
Number of Sequences: 62578
Number of extensions: 186009
Number of successful extensions: 307
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 306
Number of HSP's gapped (non-prelim): 3
length of query: 193
length of database: 14,973,337
effective HSP length: 93
effective length of query: 100
effective length of database: 9,153,583
effective search space: 915358300
effective search space used: 915358300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)