Query 029433
Match_columns 193
No_of_seqs 89 out of 91
Neff 3.5
Searched_HMMs 46136
Date Fri Mar 29 12:50:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029433.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029433hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06232 ATS3: Embryo-specific 100.0 5.8E-59 1.3E-63 370.0 13.1 114 42-155 11-125 (125)
2 cd00113 PLAT PLAT (Polycystin- 99.9 4.5E-21 9.8E-26 143.6 12.2 109 45-155 1-114 (116)
3 cd01754 PLAT_plant_stress PLAT 99.8 2.1E-19 4.6E-24 142.9 12.0 109 45-153 1-128 (129)
4 cd01753 PLAT_LOX PLAT domain o 99.7 6.2E-16 1.3E-20 119.1 11.3 103 46-150 2-108 (113)
5 cd01756 PLAT_repeat PLAT/LH2 d 99.6 4.8E-15 1E-19 113.9 12.0 100 46-146 2-106 (120)
6 cd01752 PLAT_polycystin PLAT/L 99.6 1.7E-14 3.7E-19 111.0 11.0 99 46-145 2-105 (120)
7 cd02899 PLAT_SR Scavenger rece 99.5 1.5E-13 3.3E-18 106.8 10.2 97 46-147 2-101 (109)
8 smart00308 LH2 Lipoxygenase ho 99.5 9.1E-13 2E-17 97.4 11.0 98 46-144 2-102 (105)
9 PF01477 PLAT: PLAT/LH2 domain 99.4 1.6E-12 3.5E-17 95.5 6.2 99 47-148 1-104 (113)
10 cd01757 PLAT_RAB6IP1 PLAT/LH2 98.9 2.6E-08 5.7E-13 78.2 10.0 90 46-145 2-96 (114)
11 cd01755 PLAT_lipase PLAT/ LH2 97.8 0.00033 7.2E-09 54.5 11.0 91 45-139 1-103 (120)
12 cd01758 PLAT_LPL PLAT/ LH2 dom 96.8 0.017 3.8E-07 46.6 9.8 78 45-125 1-80 (137)
13 KOG4063 Major epididymal secre 81.8 2 4.3E-05 36.4 3.8 65 1-71 1-66 (158)
14 COG3354 FlaG Putative archaeal 52.9 35 0.00077 28.9 5.2 74 3-79 3-102 (154)
15 PF07172 GRP: Glycine rich pro 43.1 25 0.00054 27.0 2.7 18 1-18 1-18 (95)
16 PF10731 Anophelin: Thrombin i 38.9 30 0.00065 25.5 2.4 21 1-21 1-21 (65)
17 PRK02710 plastocyanin; Provisi 36.2 94 0.002 23.9 5.0 39 46-88 30-68 (119)
18 KOG1693 emp24/gp25L/p24 family 30.6 89 0.0019 27.7 4.4 54 45-112 47-100 (209)
19 COG3543 Uncharacterized conser 29.9 16 0.00035 30.3 -0.2 13 1-13 1-13 (135)
20 smart00606 CBD_IV Cellulose Bi 28.8 2.5E+02 0.0054 20.9 7.5 75 45-127 53-128 (129)
21 PF11912 DUF3430: Protein of u 25.2 2.4E+02 0.0053 22.9 5.9 36 47-83 45-81 (212)
22 PF10295 DUF2406: Uncharacteri 24.0 45 0.00097 24.8 1.3 23 70-92 33-55 (69)
23 PF01108 Tissue_fac: Tissue fa 21.3 28 0.00061 25.8 -0.3 11 42-52 48-58 (107)
24 PF03690 UPF0160: Uncharacteri 20.3 82 0.0018 29.0 2.4 39 108-152 239-277 (318)
No 1
>PF06232 ATS3: Embryo-specific protein 3, (ATS3); InterPro: IPR010417 This is a family of plant seed-specific proteins identified in Arabidopsis thaliana (Mouse-ear cress). ATS3 is expressed in a pattern similar to the Arabidopsis seed storage protein genes [].
Probab=100.00 E-value=5.8e-59 Score=370.01 Aligned_cols=114 Identities=61% Similarity=1.130 Sum_probs=112.7
Q ss_pred cCCceEEEEEEecCCCCccCCceeEEEEecCCCCeEEeeCCCCCCC-CCccCCcccceeeecCCCccccEEEEEEcCCCC
Q 029433 42 FGNCTYLVVIKTSCDSKNFTRDRISIAFGDAYGNQIYAPRLDDPFT-KTFQSCSSDGFQIDGPCATDICYVYLHRSGLDG 120 (193)
Q Consensus 42 ~~~C~YtV~IkTsC~s~agT~d~ISl~FgDa~Gn~V~~~~Ld~p~~-~~FErCs~DtF~v~GpCl~~IC~lyL~r~G~dG 120 (193)
+++|+|||+|||||+|+|+|+|+|||+||||+||+||++|||+|++ ++||||++|+|+|+|+|+++||||||+|+|+||
T Consensus 11 ~~~CsYtv~IkTsC~s~a~T~d~Isi~FgDa~Gn~v~~~~Ld~p~~~~~FErCs~DtF~v~G~C~~~IC~lyL~r~G~dG 90 (125)
T PF06232_consen 11 AGSCSYTVTIKTSCSSPAGTDDQISIAFGDAYGNQVYVPRLDDPGSGDTFERCSTDTFQVTGPCLYQICYLYLYRSGSDG 90 (125)
T ss_pred CCCCcEEEEEEeCcCCCcCCcceEEEEEecCCCCEEEEccCCCCCccCchhcCCcceeEeecccCCcccEEEEEEccCCC
Confidence 6789999999999999999999999999999999999999999998 999999999999999999999999999999999
Q ss_pred ceecEEEEecCCCCceeEEecccCCCCCceeeecC
Q 029433 121 WEPESVKIISPNSSPVTYDFNTSAPNEDWYGVNLC 155 (193)
Q Consensus 121 W~pe~V~V~~~~~~~vtF~~n~~LP~~vwyG~N~C 155 (193)
|+||||+||+++++|++||||+|||+++|||||+|
T Consensus 91 W~Pe~V~Iy~~~~~~~~F~~~~~lp~~vwyG~n~C 125 (125)
T PF06232_consen 91 WKPEWVQIYGSGSKPVTFYFNTFLPNGVWYGFNYC 125 (125)
T ss_pred CEeCeEEEEEcCCCCeEEECCCcCCCCCcccccCC
Confidence 99999999999999999999999999999999999
No 2
>cd00113 PLAT PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and polycystin, but also as a single domain or as repeats.The putative function of this domain is to facilitate access to sequestered membrane or micelle bound substrates.
Probab=99.86 E-value=4.5e-21 Score=143.57 Aligned_cols=109 Identities=35% Similarity=0.472 Sum_probs=99.2
Q ss_pred ceEEEEEEecCCCCccCCceeEEEEecCCCCeEEeeCCCCCCCCCccCCcccceeeecC-CCccccEEEEEEcCCC---C
Q 029433 45 CTYLVVIKTSCDSKNFTRDRISIAFGDAYGNQIYAPRLDDPFTKTFQSCSSDGFQIDGP-CATDICYVYLHRSGLD---G 120 (193)
Q Consensus 45 C~YtV~IkTsC~s~agT~d~ISl~FgDa~Gn~V~~~~Ld~p~~~~FErCs~DtF~v~Gp-Cl~~IC~lyL~r~G~d---G 120 (193)
|.|+|+|+||+...|||+++|.|.+.+++|++..+..+++++. |||+++|+|.+..+ .++.+++|.|.+++.. +
T Consensus 1 ~~Y~v~V~Tg~~~~agT~~~v~i~l~g~~g~s~~~~l~~~~~~--f~~g~~~~f~v~~~~~lG~i~~v~l~~d~~g~~~~ 78 (116)
T cd00113 1 CRYTVTIKTGDKKGAGTDSNISLALYGENGNSSDIPILDGPGS--FERGSTDTFQIDLKLDIGDITKVYLRRDGSGLSDG 78 (116)
T ss_pred CEEEEEEEECCCCCCCccCEEEEEEEeCCCCcccEEccCCCCc--ccCCCceEEEEeccCCCcCeEEEEEEECCCCCCCC
Confidence 7899999999999999999999999999999999887766553 99999999999999 6699999999999884 9
Q ss_pred ceecEEEEecCCC-CceeEEecccCCCCCceeeecC
Q 029433 121 WEPESVKIISPNS-SPVTYDFNTSAPNEDWYGVNLC 155 (193)
Q Consensus 121 W~pe~V~V~~~~~-~~vtF~~n~~LP~~vwyG~N~C 155 (193)
|++++|+|..... ....|.++.||..+.++..++|
T Consensus 79 W~l~~V~V~~~~~~~~~~F~~~~Wl~~~~~~~~~r~ 114 (116)
T cd00113 79 WYCESITVQALGTKKVYTFPVNRWVLGGKWYTSVRS 114 (116)
T ss_pred EEEeEEEEEeCCCCCEEEEEeCCCcccCCCCCceee
Confidence 9999999997654 7899999999999998887765
No 3
>cd01754 PLAT_plant_stress PLAT/LH2 domain of plant-specific single domain protein family with unknown function. Many of its members are stress induced. In general, PLAT/LH2 consists of an eight stranded beta-barrel and it's proposed function is to mediate interaction with lipids or membrane bound proteins.
Probab=99.81 E-value=2.1e-19 Score=142.86 Aligned_cols=109 Identities=24% Similarity=0.346 Sum_probs=94.0
Q ss_pred ceEEEEEEecCCCCccCCceeEEEEecCCCCeEEeeCCC------CCCCCCccCCcccceeeecCCC-ccccEEEEEEcC
Q 029433 45 CTYLVVIKTSCDSKNFTRDRISIAFGDAYGNQIYAPRLD------DPFTKTFQSCSSDGFQIDGPCA-TDICYVYLHRSG 117 (193)
Q Consensus 45 C~YtV~IkTsC~s~agT~d~ISl~FgDa~Gn~V~~~~Ld------~p~~~~FErCs~DtF~v~GpCl-~~IC~lyL~r~G 117 (193)
|.|+|+|+||....|||+++|+|.+.+..|+.-.+..++ +++.+.|||+++|+|.|..++. ++||++.|.+|+
T Consensus 1 ~~Y~I~V~TG~~~gAGTdanV~i~l~G~~G~s~~~~l~~~~~~l~~~~~~~FerG~~d~F~v~~~~~lG~l~~irI~HDn 80 (129)
T cd01754 1 CVYTIYVQTGSIWKAGTDSRISLQIYDADGPGLRIANLEAWGGLMGAGHDYFERGNLDRFSGRGPCLPSPPCWMNLTSDG 80 (129)
T ss_pred CEEEEEEEECCCcccCCcceEEEEEEeCCCCcccEEcccccccccccccccccCCCccEEEEEeccCCCCeEEEEEEECC
Confidence 899999999999999999999999999999998887654 3557899999999999999986 899999999997
Q ss_pred C---CCceecEEEEecCC----CCceeEEecccC-----CCCCceeee
Q 029433 118 L---DGWEPESVKIISPN----SSPVTYDFNTSA-----PNEDWYGVN 153 (193)
Q Consensus 118 ~---dGW~pe~V~V~~~~----~~~vtF~~n~~L-----P~~vwyG~N 153 (193)
+ ++|++++|+|.... .....|-.|+|| |.-+...+|
T Consensus 81 ~G~~p~W~l~~V~V~d~~~~~~~~~~~F~c~rWLa~d~~~~~~~~~~~ 128 (129)
T cd01754 81 TGNHPGWYVNYVEVTQAGQHAPCMQHLFAVEQWLATDESPYMLTAVRN 128 (129)
T ss_pred CCCCCCcccCEEEEEeCCCCCcCcEEEEEecEeccCCCCcceeEEEec
Confidence 6 69999999998643 236779999999 444544444
No 4
>cd01753 PLAT_LOX PLAT domain of 12/15-lipoxygenase. As a unique subfamily of the mammalian lipoxygenases, they catalyze enzymatic lipid peroxidation in complex biological structures via direct dioxygenation of phospholipids and cholesterol esters of biomembranes and plasma lipoproteins. Both types of enzymes are cytosolic but need this domain to access their sequestered membrane or micelle bound substrates.
Probab=99.67 E-value=6.2e-16 Score=119.12 Aligned_cols=103 Identities=17% Similarity=0.224 Sum_probs=90.7
Q ss_pred eEEEEEEecCCCCccCCceeEEEEecCCCCeEEeeCCCCCCCCCccCCcccceeeecC-CCccccEEEEEEcCC---CCc
Q 029433 46 TYLVVIKTSCDSKNFTRDRISIAFGDAYGNQIYAPRLDDPFTKTFQSCSSDGFQIDGP-CATDICYVYLHRSGL---DGW 121 (193)
Q Consensus 46 ~YtV~IkTsC~s~agT~d~ISl~FgDa~Gn~V~~~~Ld~p~~~~FErCs~DtF~v~Gp-Cl~~IC~lyL~r~G~---dGW 121 (193)
.|+|+|+||-...|||+++|.|.+.+..|+.-.+ .|+++.. .|||+++|+|.+..+ .+++|++|.|.+|++ ++|
T Consensus 2 ~Y~V~V~Tg~~~~AGT~a~V~i~l~G~~g~S~~~-~L~~~~~-~FerG~~d~F~v~~~~~lG~l~~i~i~~d~~g~~~~W 79 (113)
T cd01753 2 EYKVTVATGSSLFAGTDDYIYLTLVGTAGESEKQ-LLDRPGY-DFERGAVDEYKVKVPEDLGELLLVRLRKRKYLLFDAW 79 (113)
T ss_pred EEEEEEEECCCcCCccccEEEEEEEECCCcccCE-EcCCCCC-ccCCCCeeEEEEecccCCCCcEEEEEEECCCCCCCCe
Confidence 5999999999999999999999999999998776 4777765 499999999999987 569999999999965 799
Q ss_pred eecEEEEecCCCCceeEEecccCCCCCce
Q 029433 122 EPESVKIISPNSSPVTYDFNTSAPNEDWY 150 (193)
Q Consensus 122 ~pe~V~V~~~~~~~vtF~~n~~LP~~vwy 150 (193)
++++|+|.+.......|..++||..+..+
T Consensus 80 ~l~~V~V~~~~~~~~~F~c~rWl~~~~~~ 108 (113)
T cd01753 80 FCNYITVTGPGGDEYHFPCYRWIEGYGTL 108 (113)
T ss_pred eecEEEEEcCCCCEEEEEhHHeECCCCEE
Confidence 99999999888667889999999765443
No 5
>cd01756 PLAT_repeat PLAT/LH2 domain repeats of family of proteins with unknown function. In general, PLAT/LH2 consists of an eight stranded beta-barrel and it's proposed function is to mediate interaction with lipids or membrane bound proteins.
Probab=99.63 E-value=4.8e-15 Score=113.90 Aligned_cols=100 Identities=19% Similarity=0.246 Sum_probs=90.3
Q ss_pred eEEEEEEecCCCCccCCceeEEEEecCCCCeEEeeCCCCC-CCCCccCCcccceeeecCCCccccEEEEEEcCC---CCc
Q 029433 46 TYLVVIKTSCDSKNFTRDRISIAFGDAYGNQIYAPRLDDP-FTKTFQSCSSDGFQIDGPCATDICYVYLHRSGL---DGW 121 (193)
Q Consensus 46 ~YtV~IkTsC~s~agT~d~ISl~FgDa~Gn~V~~~~Ld~p-~~~~FErCs~DtF~v~GpCl~~IC~lyL~r~G~---dGW 121 (193)
.|+|+|+||-...|||+++|.|.+....|+.-.+ .|+++ ..+.|||+++|+|.+...-++.+.+|.|.++++ ++|
T Consensus 2 ~Y~v~v~TG~~~~AGT~a~V~i~L~G~~g~s~~~-~L~~~~~~~~FerGs~d~F~i~~~~lG~l~~i~i~~d~~g~~~~W 80 (120)
T cd01756 2 TYEVTVKTGDVKGAGTDANVFITLYGENGDTGKR-KLKKSNNKNKFERGQTDKFTVEAVDLGKLKKIRIGHDNSGLGAGW 80 (120)
T ss_pred EEEEEEEECCCcCCCCCcEEEEEEEeCCCccccE-EccCCCcCCcccCCCeEEEEEEecCCCCeEEEEEEECCCCCCCCc
Confidence 5999999999999999999999999999987765 48876 667999999999999999899999999999976 699
Q ss_pred eecEEEEecCC-CCceeEEecccCCC
Q 029433 122 EPESVKIISPN-SSPVTYDFNTSAPN 146 (193)
Q Consensus 122 ~pe~V~V~~~~-~~~vtF~~n~~LP~ 146 (193)
++++|+|.... .+...|.+++||-.
T Consensus 81 ~~~~V~V~~~~~~~~~~F~~~~Wl~~ 106 (120)
T cd01756 81 FLDKVEIREPGTGDEYTFPCNRWLDK 106 (120)
T ss_pred EEeEEEEEECCCceEEEEEeCCccCC
Confidence 99999999765 56688999999953
No 6
>cd01752 PLAT_polycystin PLAT/LH2 domain of polycystin-1 like proteins. Polycystins are a large family of membrane proteins composed of multiple domains, present in fish, invertebrates, mammals, and humans that are widely expressed in various cell types and whose biological functions remain poorly defined. In human, mutations in polycystin-1 (PKD1) and polycystin-2 (PKD2) have been shown to be the cause for autosomal dominant polycystic kidney disease (ADPKD). The generally proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.
Probab=99.58 E-value=1.7e-14 Score=111.04 Aligned_cols=99 Identities=20% Similarity=0.228 Sum_probs=89.2
Q ss_pred eEEEEEEecCCCCccCCceeEEEEecCCCCeEEeeCCCCCCCCCccCCcccceeeecCC-CccccEEEEEEcCC---CCc
Q 029433 46 TYLVVIKTSCDSKNFTRDRISIAFGDAYGNQIYAPRLDDPFTKTFQSCSSDGFQIDGPC-ATDICYVYLHRSGL---DGW 121 (193)
Q Consensus 46 ~YtV~IkTsC~s~agT~d~ISl~FgDa~Gn~V~~~~Ld~p~~~~FErCs~DtF~v~GpC-l~~IC~lyL~r~G~---dGW 121 (193)
.|+|+|+||-...|||+++|.|.+....|+.-.+ .|+++....|||+++|+|.+..+. ++++++|.|.++++ ++|
T Consensus 2 ~Y~v~v~Tg~~~gAGT~a~V~i~L~G~~g~s~~~-~L~~~~~~~F~rG~~~~f~i~~~~dlG~l~~i~l~hd~~g~~~~W 80 (120)
T cd01752 2 LYLVTVFTGWRRGAGTTAKVTITLYGAEGESEPH-HLRDPEKPIFERGSVDSFLLTTPFPLGELQSIRLWHDNSGLSPSW 80 (120)
T ss_pred EEEEEEEECCCCCCCcccEEEEEEEeCCCCcccE-EcCCCCccceeCCCeeEEEecCccCCCCccEEEEEECCCCCCCCe
Confidence 5999999999999999999999999999998775 688887789999999999999875 59999999999975 699
Q ss_pred eecEEEEecCC-CCceeEEecccCC
Q 029433 122 EPESVKIISPN-SSPVTYDFNTSAP 145 (193)
Q Consensus 122 ~pe~V~V~~~~-~~~vtF~~n~~LP 145 (193)
++++|+|.... .....|..++||-
T Consensus 81 ~l~~V~V~~~~t~~~~~F~~~rWl~ 105 (120)
T cd01752 81 YLSRVIVRDLQTGKKWFFLCNDWLS 105 (120)
T ss_pred EEEEEEEEECCCCcEEEEEeCcEEC
Confidence 99999999764 5667899999995
No 7
>cd02899 PLAT_SR Scavenger receptor protein. A subfamily of PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and polycystin, but also as a single domain or as repeats.The putative function of this domain is to facilitate access to sequestered membrane or micelle bound substrates. This subfamily contains Toxoplasma gondii Scavenger protein TgSR1.
Probab=99.50 E-value=1.5e-13 Score=106.78 Aligned_cols=97 Identities=23% Similarity=0.291 Sum_probs=85.6
Q ss_pred eEEEEEEecCCCCccCCceeEEEEecCCCCeEEeeCCCCCCCCCccCCcccceeeecCCCccccEEEEEEcCC-CCceec
Q 029433 46 TYLVVIKTSCDSKNFTRDRISIAFGDAYGNQIYAPRLDDPFTKTFQSCSSDGFQIDGPCATDICYVYLHRSGL-DGWEPE 124 (193)
Q Consensus 46 ~YtV~IkTsC~s~agT~d~ISl~FgDa~Gn~V~~~~Ld~p~~~~FErCs~DtF~v~GpCl~~IC~lyL~r~G~-dGW~pe 124 (193)
.|+|+|+||-...|||+++|.|.+.+..|..=.. .|++ .|||++.|+|.|++..++++=.+.|.++|. |+|+++
T Consensus 2 ~Y~I~V~TG~~~~AGT~~~V~i~L~G~~g~S~~~-~L~~----~F~~G~~d~F~v~~~dLG~l~~i~l~n~g~~~~Wf~~ 76 (109)
T cd02899 2 TYTASVQTGKDKEAGTNGTIEITLLGSSGRSNPK-TLSQ----GFYPGSLKRIRFRAADVGDINAIILSNTALNDPWYCD 76 (109)
T ss_pred eEEEEEEECCCCCCCccceEEEEEEECCCCcCCE-EccC----ccCCCceEEEEECccccCceEEEEEECCCCCCCceee
Confidence 5999999999999999999999999999966553 3443 599999999999999999999999988887 799999
Q ss_pred EEEEecCCCCceeEEecccC--CCC
Q 029433 125 SVKIISPNSSPVTYDFNTSA--PNE 147 (193)
Q Consensus 125 ~V~V~~~~~~~vtF~~n~~L--P~~ 147 (193)
+|+|..+..+...|-.++|| |++
T Consensus 77 ~V~V~~~~g~~~~Fpc~rWla~~~~ 101 (109)
T cd02899 77 YVRIKSEDGKVFAFNVKRWIGYPYE 101 (109)
T ss_pred EEEEECCCCCEEEEEcceeeCCchh
Confidence 99999876777789999999 654
No 8
>smart00308 LH2 Lipoxygenase homology 2 (beta barrel) domain.
Probab=99.46 E-value=9.1e-13 Score=97.37 Aligned_cols=98 Identities=18% Similarity=0.185 Sum_probs=81.9
Q ss_pred eEEEEEEecCCCCccCCceeEEEEecCCCCeEEeeCCCCCCCCCccCCcccceeeecCC-CccccEEEEEEcC-CCCcee
Q 029433 46 TYLVVIKTSCDSKNFTRDRISIAFGDAYGNQIYAPRLDDPFTKTFQSCSSDGFQIDGPC-ATDICYVYLHRSG-LDGWEP 123 (193)
Q Consensus 46 ~YtV~IkTsC~s~agT~d~ISl~FgDa~Gn~V~~~~Ld~p~~~~FErCs~DtF~v~GpC-l~~IC~lyL~r~G-~dGW~p 123 (193)
.|+|+|+||-...|||+++|.|.+....|+.-.. .+.......|||+++|+|.+..+. ++++.++.+.+++ .++|++
T Consensus 2 ~Y~v~V~Tg~~~~aGT~~~V~l~L~g~~~~s~~~-~~~~~~~~~f~~g~~~~f~v~~~~~lG~l~~v~v~~d~~~~~w~l 80 (105)
T smart00308 2 KYKVTVTTGGLDFAGTTASVSLSLVGAEGDGKES-KLDYLFKGIFARGSTYEFTFDVDEDFGELGAVKIKNEHRHPEWFL 80 (105)
T ss_pred EEEEEEEECCccCCCccceEEEEEEeCCCCCcce-eccccCCccccCCceEEEEEecccCCCCcEEEEEEeCCCCCCeEE
Confidence 5999999999999999999999999999642211 112112235999999999999986 7999999999999 699999
Q ss_pred cEEEEecC-CCCceeEEecccC
Q 029433 124 ESVKIISP-NSSPVTYDFNTSA 144 (193)
Q Consensus 124 e~V~V~~~-~~~~vtF~~n~~L 144 (193)
++|+|.+. ......|-.++||
T Consensus 81 ~~V~V~~~~~~~~~~F~c~~Wl 102 (105)
T smart00308 81 KSITVKDLPTGGKYHFPCNSWV 102 (105)
T ss_pred EEEEEEECCCCCEEEEEcCcee
Confidence 99999864 5678999999998
No 9
>PF01477 PLAT: PLAT/LH2 domain; InterPro: IPR001024 Lipoxygenases (1.13.11.- from EC) are a class of iron-containing dioxygenases which catalyses the hydroperoxidation of lipids, containing a cis,cis-1,4-pentadiene structure. They are common in plants where they may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. In mammals a number of lipoxygenases isozymes are involved in the metabolism of prostaglandins and leukotrienes []. Sequence data is available for the following lipoxygenases: Plant lipoxygenases (1.13.11.12 from EC, IPR001246 from INTERPRO). Plants express a variety of cytosolic isozymes as well as what seems to be a chloroplast isozyme []. Mammalian arachidonate 5-lipoxygenase (1.13.11.34 from EC, IPR001885 from INTERPRO). Mammalian arachidonate 12-lipoxygenase (1.13.11.31 from EC, IPR001885 from INTERPRO). Mammalian erythroid cell-specific 15-lipoxygenase (1.13.11.33 from EC, IPR001885 from INTERPRO). The iron atom in lipoxygenases is bound by four ligands, three of which are histidine residues []. Six histidines are conserved in all lipoxygenase sequences, five of them are found clustered in a stretch of 40 amino acids. This region contains two of the three iron-ligands; the other histidines have been shown [] to be important for the activity of lipoxygenases. This entry represents a domain found in lipoxygenases and other enzymes. It is known as the PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology) domain, is found in a variety of membrane or lipid associated proteins. Structurally, this domain forms a beta-sandwich composed of two sheets of four strands each [, , ]. The most highly conserved regions coincide with the beta-strands, with most of the highly conserved residues being buried within the protein. An exception to this is a surface lysine or arginine that occurs on the surface of the fifth beta-strand of the eukaryotic domains. In pancreatic lipase, the lysine in this position forms a salt bridge with the procolipase protein. The conservation of a charged surface residue may indicate the location of a conserved ligand-binding site. It is thought that this domain may mediate membrane attachment via other protein binding partners.; GO: 0005515 protein binding; PDB: 3FG3_D 3FG1_C 3FG4_D 3DY5_A 2FNQ_B 3O8Y_B 3V99_B 3V92_A 3V98_B 1HPL_A ....
Probab=99.35 E-value=1.6e-12 Score=95.52 Aligned_cols=99 Identities=22% Similarity=0.254 Sum_probs=84.3
Q ss_pred EEEEEEecCCCCccCCceeEEEEecCCCCeEEeeCCCCCCCCCccCCcccceeeecC-CCccccEEEEEEcCC---CCce
Q 029433 47 YLVVIKTSCDSKNFTRDRISIAFGDAYGNQIYAPRLDDPFTKTFQSCSSDGFQIDGP-CATDICYVYLHRSGL---DGWE 122 (193)
Q Consensus 47 YtV~IkTsC~s~agT~d~ISl~FgDa~Gn~V~~~~Ld~p~~~~FErCs~DtF~v~Gp-Cl~~IC~lyL~r~G~---dGW~ 122 (193)
|+|.|+||-...|||+++|.|.+....|+.-...-++.+. ..+ .++|+|.+..+ -+++|.++.|.++|. ++|+
T Consensus 1 Y~v~v~Tg~~~~aGT~~~V~i~l~G~~g~s~~~~l~~~~~-~~~--g~~d~F~i~~~~~lG~i~~i~i~~~~~~~~~~W~ 77 (113)
T PF01477_consen 1 YRVTVKTGDERGAGTDANVYITLYGSKGKSGEIELLDPSG-FNF--GSTDTFTIETPEDLGEIQKIRIWHDGSGPSPSWY 77 (113)
T ss_dssp EEEEEEEESSTEEEESSEEEEEEEETTEEEEEEEEEEEEE-TST--TEEEEEEEEESSCGCSEEEEEEEEESSSSSSEEE
T ss_pred CEEEEEECCCCCCCcCCeEEEEEEECCCCcceEEEeeeee-ccc--CceEEeeeeecccCCCCcEEEEEEccCCCccceE
Confidence 9999999999999999999999999999987765444332 223 99999999995 679999999999955 7999
Q ss_pred ecEEEEecC-CCCceeEEecccCCCCC
Q 029433 123 PESVKIISP-NSSPVTYDFNTSAPNED 148 (193)
Q Consensus 123 pe~V~V~~~-~~~~vtF~~n~~LP~~v 148 (193)
+++|+|... .....+|.++.||-.+.
T Consensus 78 l~~V~V~~~~~~~~~~F~~~~Wl~~~~ 104 (113)
T PF01477_consen 78 LDSVVVTDGETGRTYTFPCNRWLDPDK 104 (113)
T ss_dssp EEEEEEEETTTSEEEEEEEEEEESTTE
T ss_pred EEEEEEEeCCCCcEEEEEcCCEECCCC
Confidence 999999874 56789999999996543
No 10
>cd01757 PLAT_RAB6IP1 PLAT/LH2 domain present in RAB6 interacting protein 1 (Rab6IP1)_like family. PLAT/LH2 domains consists of an eight stranded beta-barrel. In RabIP1 this domain may participate in lipid-mediated modulation of Rab6IP1's function via it's generally proposed function of mediating interaction with lipids or membrane bound proteins.
Probab=98.85 E-value=2.6e-08 Score=78.22 Aligned_cols=90 Identities=13% Similarity=0.141 Sum_probs=74.7
Q ss_pred eEEEEEEecCC-CCccCCceeEEEEecCCCCeEEeeCCCCCCCCCccCCcccceeeecCCCccccEEEEEEcCC---CCc
Q 029433 46 TYLVVIKTSCD-SKNFTRDRISIAFGDAYGNQIYAPRLDDPFTKTFQSCSSDGFQIDGPCATDICYVYLHRSGL---DGW 121 (193)
Q Consensus 46 ~YtV~IkTsC~-s~agT~d~ISl~FgDa~Gn~V~~~~Ld~p~~~~FErCs~DtF~v~GpCl~~IC~lyL~r~G~---dGW 121 (193)
.|.|+|.||-. ..|||+++|.|.+....|+.= ...|+++ .| .|.+....++++-++.+.||.+ ++|
T Consensus 2 ~Y~VtV~TG~~~~gAGT~anV~i~L~G~~g~s~-~~~L~~~---~f------~~~v~~~~LG~L~~irIwHDnsG~~~~W 71 (114)
T cd01757 2 PYHVVIVPSKKLGGSMFTANPWICVSGELGETP-PLQIPKN---SL------EMTFDCQNLGKLTTVQIGHDNSGLLAKW 71 (114)
T ss_pred eEEEEEEeCCCCCCCCCcceEEEEEEEcCCCcC-CEEecCC---ce------EEEEecCCcCCcEEEEEEECCCCCCCCe
Confidence 59999999999 699999999999999998643 3345532 34 5888778889999999999955 799
Q ss_pred eecEEEEecC-CCCceeEEecccCC
Q 029433 122 EPESVKIISP-NSSPVTYDFNTSAP 145 (193)
Q Consensus 122 ~pe~V~V~~~-~~~~vtF~~n~~LP 145 (193)
++++|+|... ......|-.|+||-
T Consensus 72 fl~~V~V~d~~t~~~~~FpC~rWLa 96 (114)
T cd01757 72 LVEYVMVRNEITGHTYKFPCGRWLG 96 (114)
T ss_pred eeeEEEEEeCCCCCEEEEecCceec
Confidence 9999999984 55667799999994
No 11
>cd01755 PLAT_lipase PLAT/ LH2 domain present in connection with a lipase domain. This family contains two major subgroups, the lipoprotein lipase (LPL) and the pancreatic triglyceride lipase. LPL is a key enzyme in catabolism of plasma lipoprotein triglycerides (TGs). The central role of triglyceride lipases is in energy production. In general, PLAT/LH2 domain's proposed function is to mediate interaction with lipids or membrane bound proteins.
Probab=97.84 E-value=0.00033 Score=54.53 Aligned_cols=91 Identities=10% Similarity=0.066 Sum_probs=72.8
Q ss_pred ceEEEEEEecCCCCccCCceeEEEEecCCCCeEEeeCCCCCCCCCccCCcccceee-ecCCCccccEEEEEEcCC-----
Q 029433 45 CTYLVVIKTSCDSKNFTRDRISIAFGDAYGNQIYAPRLDDPFTKTFQSCSSDGFQI-DGPCATDICYVYLHRSGL----- 118 (193)
Q Consensus 45 C~YtV~IkTsC~s~agT~d~ISl~FgDa~Gn~V~~~~Ld~p~~~~FErCs~DtF~v-~GpCl~~IC~lyL~r~G~----- 118 (193)
+.|.|.|.||-...++|+++|.|.+.-..|+.=.+ .|.++ .||++++|+|-+ .-..++++-.|.+.++.+
T Consensus 1 ~hY~vtV~~~~~~~agt~~~v~v~L~G~~g~s~~~-~l~~~---~~~~g~~~sfli~t~~~lG~l~~v~~~~dn~~~~~~ 76 (120)
T cd01755 1 WHYQVKVHLSGKKNLEVDGTFTVSLYGTKGETEQL-PIVLG---ELKPNKTYSFLIDTEVDIGDLLKVKFKWENNVINSN 76 (120)
T ss_pred CEEEEEEEEeCccccCcCccEEEEEEcCCCCcccE-EEeCC---cccCCCEEEEEEEcCCCccceEEEEEEEcCCCcccc
Confidence 36999999999999999999999999888876544 23333 489999999999 667889999999999844
Q ss_pred -----CCceecEEEEe-cCCCCceeEE
Q 029433 119 -----DGWEPESVKII-SPNSSPVTYD 139 (193)
Q Consensus 119 -----dGW~pe~V~V~-~~~~~~vtF~ 139 (193)
+.|+.+.|.|. +...+..+|=
T Consensus 77 ~~~~~p~~~~~~I~Vq~get~~~~~FC 103 (120)
T cd01755 77 SGETLPKLGARKIRVKSGETQKKFTFC 103 (120)
T ss_pred cccCCCcEEEEEEEEEECCCCCEEEEE
Confidence 48889999996 4454444443
No 12
>cd01758 PLAT_LPL PLAT/ LH2 domain present in lipoprotein lipase (LPL). LPL is a key enzyme in catabolism of plasma lipoprotein triglycerides (TGs) and has therefeore has a profound influence on triglyceride and high-density lipoprotein (HDL) cholesterol levels in the blood. In general, PLAT/LH2 domain's proposed function is to mediate interaction with lipids or membrane bound proteins.
Probab=96.76 E-value=0.017 Score=46.62 Aligned_cols=78 Identities=17% Similarity=0.218 Sum_probs=62.2
Q ss_pred ceEEEEEEecCCCCcc-CCceeEEEEecCCCCeEEeeCCCCCCCCCccCCcccceee-ecCCCccccEEEEEEcCCCCce
Q 029433 45 CTYLVVIKTSCDSKNF-TRDRISIAFGDAYGNQIYAPRLDDPFTKTFQSCSSDGFQI-DGPCATDICYVYLHRSGLDGWE 122 (193)
Q Consensus 45 C~YtV~IkTsC~s~ag-T~d~ISl~FgDa~Gn~V~~~~Ld~p~~~~FErCs~DtF~v-~GpCl~~IC~lyL~r~G~dGW~ 122 (193)
+.|.|.|.||-...++ |+++|.|++.-..|+.=.+ .|.+| +.+|++++|+|-+ .-..++++-.|.+...+..||.
T Consensus 1 yhYqVtV~~~~~~~~~~t~~~v~i~L~G~~g~S~~~-~l~~~--~~~~~G~t~sfLi~t~~dlG~L~~vk~~W~~n~~~~ 77 (137)
T cd01758 1 FHYQLKIHFFNQTNRIETDPTFTISLYGTLGESENL-PLTLP--EGITGNKTNSFLITTEKDIGDLLMLKLKWEGSSLWS 77 (137)
T ss_pred CeEEEEEEEecccCCCcccceEEEEEEcCCCcccCE-EEecC--cccCCCCeEEEEEECCCCcCCEEEEEEEEeCCCCCC
Confidence 4699999999988888 9999999999888876544 23334 3579999999999 6788899999999666665555
Q ss_pred ecE
Q 029433 123 PES 125 (193)
Q Consensus 123 pe~ 125 (193)
|-|
T Consensus 78 ~sW 80 (137)
T cd01758 78 NSW 80 (137)
T ss_pred hhh
Confidence 444
No 13
>KOG4063 consensus Major epididymal secretory protein HE1 [Function unknown]
Probab=81.75 E-value=2 Score=36.37 Aligned_cols=65 Identities=20% Similarity=0.220 Sum_probs=39.0
Q ss_pred CchhhhhHHHHHHHHHHHhhhcccccCcccccc-cccccccccCCceEEEEEEecCCCCccCCceeEEEEec
Q 029433 1 MKIKLAAHFLLLLAFSAFMLSEAETQLKPHAIE-SFTVNYIQFGNCTYLVVIKTSCDSKNFTRDRISIAFGD 71 (193)
Q Consensus 1 ~~~~~~~h~ll~~a~~~~~~s~a~~~~~P~~~~-s~~~~~~q~~~C~YtV~IkTsC~s~agT~d~ISl~FgD 71 (193)
|+|+ ..-++.|+|++.++.+++.++.--|=.. .-.+...+-.+|.-+ =|.-+.||+..|+|.|--
T Consensus 1 m~ms-~~~~v~l~alls~a~aq~~~t~~k~C~ss~g~~~~V~i~~C~t~-----pC~lkKgt~~si~I~F~~ 66 (158)
T KOG4063|consen 1 MMMS-FLKTVILLALLSLAAAQAISTGVKQCGSSDGTPLEVKIDGCPTT-----PCQLKKGTEASIQIDFAP 66 (158)
T ss_pred CchH-HHHHHHHHHHHHHhhhcccCcccccccCCCCcceEEEecCCCCC-----ceEEecCCeEEEEEEEee
Confidence 7787 3445556666666666655431111111 111222235688754 899999999999999964
No 14
>COG3354 FlaG Putative archaeal flagellar protein G [Cell motility and secretion]
Probab=52.92 E-value=35 Score=28.89 Aligned_cols=74 Identities=23% Similarity=0.276 Sum_probs=45.7
Q ss_pred hhhhhHHHHHHHHHHHhhhccccc------------Ccc-----cccccccc----cccc----cCCceEEEEEE-ecCC
Q 029433 3 IKLAAHFLLLLAFSAFMLSEAETQ------------LKP-----HAIESFTV----NYIQ----FGNCTYLVVIK-TSCD 56 (193)
Q Consensus 3 ~~~~~h~ll~~a~~~~~~s~a~~~------------~~P-----~~~~s~~~----~~~q----~~~C~YtV~Ik-TsC~ 56 (193)
.--+.|..++.|.++++.|.|..- .+- +..+.|.+ +.+. ++.=+||++|| ||..
T Consensus 3 s~a~SeLV~FIaalLiaasvag~Lt~~t~~l~~sm~d~~~~~a~~i~~dFaIIndPg~i~~~~~~g~~t~t~yiKNtG~~ 82 (154)
T COG3354 3 SVASSELVMFIAALLIAASVAGALTDSTTHLSDSMNDRSDMLADMIQTDFAIINDPGQIPYVGTDGPYTYTFYIKNTGSD 82 (154)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHhhhhHhhhhhhhchhhHHHHHHhhccEEEecCCCCCccccCCCceEEEEEEecCCCc
Confidence 334678888888887766655421 111 11223322 2121 35678999999 8999
Q ss_pred CCccCCceeEEEEecCCCCeEEe
Q 029433 57 SKNFTRDRISIAFGDAYGNQIYA 79 (193)
Q Consensus 57 s~agT~d~ISl~FgDa~Gn~V~~ 79 (193)
+.+.+.+.|.+.. +||.++-
T Consensus 83 ~~~fd~~sitVli---DG~iv~~ 102 (154)
T COG3354 83 SIAFDNTSITVLI---DGNIVTP 102 (154)
T ss_pred ccccCCCeEEEEE---cCcEecc
Confidence 9999999988764 4555543
No 15
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=43.13 E-value=25 Score=27.02 Aligned_cols=18 Identities=33% Similarity=0.133 Sum_probs=9.3
Q ss_pred CchhhhhHHHHHHHHHHH
Q 029433 1 MKIKLAAHFLLLLAFSAF 18 (193)
Q Consensus 1 ~~~~~~~h~ll~~a~~~~ 18 (193)
|-+|...=+.|+||.+++
T Consensus 1 MaSK~~llL~l~LA~lLl 18 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLL 18 (95)
T ss_pred CchhHHHHHHHHHHHHHH
Confidence 778853333344444443
No 16
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=38.90 E-value=30 Score=25.51 Aligned_cols=21 Identities=38% Similarity=0.341 Sum_probs=16.4
Q ss_pred CchhhhhHHHHHHHHHHHhhh
Q 029433 1 MKIKLAAHFLLLLAFSAFMLS 21 (193)
Q Consensus 1 ~~~~~~~h~ll~~a~~~~~~s 21 (193)
|-.|+.+--|||.|++.+..+
T Consensus 1 MA~Kl~vialLC~aLva~vQ~ 21 (65)
T PF10731_consen 1 MASKLIVIALLCVALVAIVQS 21 (65)
T ss_pred CcchhhHHHHHHHHHHHHHhc
Confidence 778888888899988885444
No 17
>PRK02710 plastocyanin; Provisional
Probab=36.23 E-value=94 Score=23.85 Aligned_cols=39 Identities=15% Similarity=0.094 Sum_probs=25.3
Q ss_pred eEEEEEEecCCCCccCCceeEEEEecCCCCeEEeeCCCCCCCC
Q 029433 46 TYLVVIKTSCDSKNFTRDRISIAFGDAYGNQIYAPRLDDPFTK 88 (193)
Q Consensus 46 ~YtV~IkTsC~s~agT~d~ISl~FgDa~Gn~V~~~~Ld~p~~~ 88 (193)
+++|.|.+.-..-++.-+.|.|.=||. |.+.|-++..|+
T Consensus 30 ~~~V~~~~~~~~~~F~P~~i~v~~Gd~----V~~~N~~~~~H~ 68 (119)
T PRK02710 30 TVEVKMGSDAGMLAFEPSTLTIKAGDT----VKWVNNKLAPHN 68 (119)
T ss_pred eEEEEEccCCCeeEEeCCEEEEcCCCE----EEEEECCCCCce
Confidence 566777654344577888888888774 666655544443
No 18
>KOG1693 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.61 E-value=89 Score=27.71 Aligned_cols=54 Identities=15% Similarity=0.310 Sum_probs=33.7
Q ss_pred ceEEEEEEecCCCCccCCceeEEEEecCCCCeEEeeCCCCCCCCCccCCcccceeeecCCCccccEEE
Q 029433 45 CTYLVVIKTSCDSKNFTRDRISIAFGDAYGNQIYAPRLDDPFTKTFQSCSSDGFQIDGPCATDICYVY 112 (193)
Q Consensus 45 C~YtV~IkTsC~s~agT~d~ISl~FgDa~Gn~V~~~~Ld~p~~~~FErCs~DtF~v~GpCl~~IC~ly 112 (193)
++|.-.|.|| -.=.|+...-|++|+.||-. ....++.| .|...+.=.|.+|.-+
T Consensus 47 ~~~~fqV~tG------G~fDVD~~I~aPdgkvI~~~--~kk~~~~~------~f~ae~~G~Y~fCFsN 100 (209)
T KOG1693|consen 47 TSFEFQVQTG------GHFDVDYDIEAPDGKVIYSE--KKKRYDSF------LFKAEGKGEYTFCFSN 100 (209)
T ss_pred EEEEEEEEeC------CceeeEEEEECCCCCEEeec--cccccccE------EEEEecceEEEEEecC
Confidence 5666666665 45579999999999999853 22333333 3444444446777644
No 19
>COG3543 Uncharacterized conserved protein [Function unknown]
Probab=29.92 E-value=16 Score=30.29 Aligned_cols=13 Identities=46% Similarity=0.792 Sum_probs=11.9
Q ss_pred CchhhhhHHHHHH
Q 029433 1 MKIKLAAHFLLLL 13 (193)
Q Consensus 1 ~~~~~~~h~ll~~ 13 (193)
|.+|+-+|+|||+
T Consensus 1 ~~l~LR~HHLlCm 13 (135)
T COG3543 1 MTLRLRAHHLLCM 13 (135)
T ss_pred Ccceecchhhhee
Confidence 7789999999998
No 20
>smart00606 CBD_IV Cellulose Binding Domain Type IV.
Probab=28.78 E-value=2.5e+02 Score=20.92 Aligned_cols=75 Identities=15% Similarity=0.202 Sum_probs=40.5
Q ss_pred ceEEEEEEecCCCCccCCceeEEEEecCCCCeEEeeCCCCCC-CCCccCCcccceeeecCCCccccEEEEEEcCCCCcee
Q 029433 45 CTYLVVIKTSCDSKNFTRDRISIAFGDAYGNQIYAPRLDDPF-TKTFQSCSSDGFQIDGPCATDICYVYLHRSGLDGWEP 123 (193)
Q Consensus 45 C~YtV~IkTsC~s~agT~d~ISl~FgDa~Gn~V~~~~Ld~p~-~~~FErCs~DtF~v~GpCl~~IC~lyL~r~G~dGW~p 123 (193)
=.|+|.++-+-... ...|.|++.+..|..+---.++..+ .+.|+.-+ .++..+ ...=.|++.-.|.++|..
T Consensus 53 g~~~i~~~~as~~~---~~~i~v~~d~~~G~~~~~~~~p~tg~~~~~~~~~---~~v~~~--~G~~~l~~~~~~~~~~~l 124 (129)
T smart00606 53 GAYTFTARVASGNA---GGSIELRLDSPTGTLVGTVDVPSTGGWQTYQTVS---ATVTLP--AGVHDVYLVFKGGNYFNI 124 (129)
T ss_pred CceEEEEEEeCCCC---CceEEEEECCCCCcEEEEEEeCCCCCCccCEEEE---EEEccC--CceEEEEEEEECCCcEEE
Confidence 45777776533222 2388898888778776655554432 23443222 223222 233345665566555777
Q ss_pred cEEE
Q 029433 124 ESVK 127 (193)
Q Consensus 124 e~V~ 127 (193)
+|++
T Consensus 125 d~~~ 128 (129)
T smart00606 125 DWFR 128 (129)
T ss_pred EEEE
Confidence 7765
No 21
>PF11912 DUF3430: Protein of unknown function (DUF3430); InterPro: IPR021837 This family of proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 209 to 265 amino acids in length.
Probab=25.19 E-value=2.4e+02 Score=22.86 Aligned_cols=36 Identities=19% Similarity=0.181 Sum_probs=22.8
Q ss_pred EEEEEEecCCCCc-cCCceeEEEEecCCCCeEEeeCCC
Q 029433 47 YLVVIKTSCDSKN-FTRDRISIAFGDAYGNQIYAPRLD 83 (193)
Q Consensus 47 YtV~IkTsC~s~a-gT~d~ISl~FgDa~Gn~V~~~~Ld 83 (193)
|.+.+.| |.... .......+..-+..|+.+.+...+
T Consensus 45 ys~~~~~-Ci~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (212)
T PF11912_consen 45 YSIPVGT-CITFDNQNNYYFSVFSCSNNGNIIQYNYYN 81 (212)
T ss_pred EEeeCCe-eECCccccceEEEEEEECCCCeEEEEEecC
Confidence 5555667 88877 455555666666667777665444
No 22
>PF10295 DUF2406: Uncharacterised protein (DUF2406); InterPro: IPR018809 This entry represents a family of small proteins conserved in fungi. The function is not known.
Probab=23.99 E-value=45 Score=24.77 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=21.4
Q ss_pred ecCCCCeEEeeCCCCCCCCCccC
Q 029433 70 GDAYGNQIYAPRLDDPFTKTFQS 92 (193)
Q Consensus 70 gDa~Gn~V~~~~Ld~p~~~~FEr 92 (193)
-|.+||.|-.|++-+|-...|||
T Consensus 33 kD~fG~~I~~PD~SNPTR~R~ER 55 (69)
T PF10295_consen 33 KDIFGNPITDPDRSNPTRSRDER 55 (69)
T ss_pred cccCCCccCCCCCCCCCcccccC
Confidence 89999999999999998778988
No 23
>PF01108 Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R ....
Probab=21.25 E-value=28 Score=25.82 Aligned_cols=11 Identities=45% Similarity=0.359 Sum_probs=9.8
Q ss_pred cCCceEEEEEE
Q 029433 42 FGNCTYLVVIK 52 (193)
Q Consensus 42 ~~~C~YtV~Ik 52 (193)
..+-+|+|..+
T Consensus 48 ~~~~~ytVq~~ 58 (107)
T PF01108_consen 48 PPNVTYTVQYK 58 (107)
T ss_dssp SSTEEEEEEEE
T ss_pred CCCeEEEEEEE
Confidence 56899999999
No 24
>PF03690 UPF0160: Uncharacterised protein family (UPF0160); InterPro: IPR003226 The function of this domain is not known, but it is found in several uncharacterised proteins and a probable metal dependent protein hydrolase.
Probab=20.26 E-value=82 Score=29.05 Aligned_cols=39 Identities=21% Similarity=0.578 Sum_probs=30.9
Q ss_pred ccEEEEEEcCCCCceecEEEEecCCCCceeEEecccCCCCCceee
Q 029433 108 ICYVYLHRSGLDGWEPESVKIISPNSSPVTYDFNTSAPNEDWYGV 152 (193)
Q Consensus 108 IC~lyL~r~G~dGW~pe~V~V~~~~~~~vtF~~n~~LP~~vwyG~ 152 (193)
-....+|.+++++|+...|-+. +.+|.-+..||+ -|.|-
T Consensus 239 ~i~fvi~p~~~~~wriq~Vp~~-----~~sF~~R~~LP~-~WrGl 277 (318)
T PF03690_consen 239 EILFVIYPDGSGGWRIQAVPVS-----PGSFENRKPLPE-EWRGL 277 (318)
T ss_pred ceEEEEEECCCCCEEEEEecCC-----CCCcccccCCCh-hhCCC
Confidence 3577889999999999999873 346888899997 56664
Done!