BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029435
(193 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2H8G|A Chain A, 5'-Methylthioadenosine Nucleosidase From Arabidopsis
Thaliana
pdb|2H8G|B Chain B, 5'-Methylthioadenosine Nucleosidase From Arabidopsis
Thaliana
pdb|2QSU|A Chain A, Structure Of Arabidopsis Thaliana 5'-Methylthioadenosine
Nucleosidase In Apo Form
pdb|2QSU|B Chain B, Structure Of Arabidopsis Thaliana 5'-Methylthioadenosine
Nucleosidase In Apo Form
pdb|2QTG|A Chain A, Crystal Structure Of Arabidopsis Thaliana 5'-
Methylthioadenosine Nucleosidase In Complex With 5'-
Methylthiotubercidin
pdb|2QTG|B Chain B, Crystal Structure Of Arabidopsis Thaliana 5'-
Methylthioadenosine Nucleosidase In Complex With 5'-
Methylthiotubercidin
pdb|2QTT|A Chain A, Crystal Structure Of Arabidopsis Thaliana 5'-
Methylthioadenosine Nucleosidase In Complex With
Formycin A
pdb|2QTT|B Chain B, Crystal Structure Of Arabidopsis Thaliana 5'-
Methylthioadenosine Nucleosidase In Complex With
Formycin A
pdb|3LGS|A Chain A, A. Thaliana Mta Nucleosidase In Complex With
S-Adenosylhomocysteine
pdb|3LGS|B Chain B, A. Thaliana Mta Nucleosidase In Complex With
S-Adenosylhomocysteine
pdb|3LGS|C Chain C, A. Thaliana Mta Nucleosidase In Complex With
S-Adenosylhomocysteine
pdb|3LGS|D Chain D, A. Thaliana Mta Nucleosidase In Complex With
S-Adenosylhomocysteine
Length = 267
Score = 257 bits (656), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 122/180 (67%), Positives = 145/180 (80%)
Query: 12 ISSVVIIIAMQTEAMPLVNKFELKEDQDSVFPEGVPWVRYHGTYKDLHLNIIWPGKDTSL 71
ISSVV +IAMQ EA+PLVNKF L E DS +G+PWV YHG +KDL +N++ PG+D +L
Sbjct: 26 ISSVVFVIAMQAEALPLVNKFGLSETTDSPLGKGLPWVLYHGVHKDLRINVVCPGRDAAL 85
Query: 72 EVDSVGTISASLVTYASIQALKPDLIINXXXXXXXXXXXXSIGDVFLISDVAFHDRRIPI 131
+DSVGT+ ASL+T+ASIQALKPD+IIN +IGDVFL+SDV FHDRRIPI
Sbjct: 86 GIDSVGTVPASLITFASIQALKPDIIINAGTCGGFKVKGANIGDVFLVSDVVFHDRRIPI 145
Query: 132 PVFDLYGVGQRQAFSTPNLLRELNLKVCKLSTGDSLDMSSQDETSITANDATIKDMEVRA 191
P+FDLYGVG RQAFSTPNLL+ELNLK+ +LSTGDSLDMS+QDET I ANDAT+KDME A
Sbjct: 146 PMFDLYGVGLRQAFSTPNLLKELNLKIGRLSTGDSLDMSTQDETLIIANDATLKDMEGAA 205
>pdb|3BSF|A Chain A, Crystal Structure Of The MtaSAH NUCLEOSIDASE
pdb|3BSF|B Chain B, Crystal Structure Of The MtaSAH NUCLEOSIDASE
Length = 254
Score = 231 bits (588), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 107/184 (58%), Positives = 139/184 (75%)
Query: 5 GEKSQEAISSVVIIIAMQTEAMPLVNKFELKEDQDSVFPEGVPWVRYHGTYKDLHLNIIW 64
G+ + IS++V I+AMQ EA PL+N+ L E+ ++ FP+ V W+ + G YKDL++NI+
Sbjct: 6 GQVEKRPISTIVFIVAMQKEAQPLINRLRLVEEVNTPFPKEVTWIMFKGMYKDLNINIVC 65
Query: 65 PGKDTSLEVDSVGTISASLVTYASIQALKPDLIINXXXXXXXXXXXXSIGDVFLISDVAF 124
PGKD++L V+SVGT+ ASLVTYASI A++PDLIIN I DV+++S VAF
Sbjct: 66 PGKDSTLGVESVGTVPASLVTYASILAIQPDLIINAGTAGGFKAKGACISDVYVVSTVAF 125
Query: 125 HDRRIPIPVFDLYGVGQRQAFSTPNLLRELNLKVCKLSTGDSLDMSSQDETSITANDATI 184
HDRRIP+PV D+YGVG R F TPNL++ELNLKV +LSTGDS+DMS DE SITANDAT+
Sbjct: 126 HDRRIPVPVLDIYGVGMRNTFPTPNLIKELNLKVGRLSTGDSMDMSPHDEESITANDATV 185
Query: 185 KDME 188
KDME
Sbjct: 186 KDME 189
>pdb|4GMH|A Chain A, Crystal Structure Of Staphylococcus Aureus
5'-MethylthioadenosineS- Adenosylhomocysteine
Nucleosidase
Length = 230
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 51/116 (43%), Gaps = 19/116 (16%)
Query: 13 SSVVIIIAMQTEAMPLVNKF-ELKEDQDSVFPEGVPWVR-YHGTYKDLHLNIIWPGKDTS 70
S + II AM+ E L NK +L E V V+ Y G KD + I G
Sbjct: 2 SMIGIIGAMEEEVTILKNKLTQLSEIS-------VAHVKFYTGILKDREVVITQSG---- 50
Query: 71 LEVDSVGTISASLVTYASIQALKPDLIINXXXXXXXXXXXXSIGDVFLISDVAFHD 126
+G ++A++ T I KPD+IIN ++GDV + DV +HD
Sbjct: 51 -----IGKVNAAISTTLLINKFKPDVIIN-TGSAGALDESLNVGDVLISDDVKYHD 100
>pdb|3BL6|A Chain A, Crystal Structure Of Staphylococcus Aureus 5'-
MethylthioadenosineS-Adenosylhomocysteine Nucleosidase
In Complex With Formycin A
Length = 230
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 49/112 (43%), Gaps = 19/112 (16%)
Query: 17 IIIAMQTEAMPLVNKF-ELKEDQDSVFPEGVPWVR-YHGTYKDLHLNIIWPGKDTSLEVD 74
II AM+ E L NK +L E V V+ Y G KD + I G
Sbjct: 6 IIGAMEEEVTILKNKLTQLSEIS-------VAHVKFYTGILKDREVVITQSG-------- 50
Query: 75 SVGTISASLVTYASIQALKPDLIINXXXXXXXXXXXXSIGDVFLISDVAFHD 126
+G ++A++ T I KPD+IIN ++GDV + DV +HD
Sbjct: 51 -IGKVNAAISTTLLINKFKPDVIIN-TGSAGALDESLNVGDVLISDDVKYHD 100
>pdb|3DP9|A Chain A, Crystal Structure Of Vibrio Cholerae
5'-methylthioadenosine/s-adenosyl Homocysteine
Nucleosidase (mtan) Complexed With Butylthio-dadme-
Immucillin A
pdb|3DP9|C Chain C, Crystal Structure Of Vibrio Cholerae
5'-methylthioadenosine/s-adenosyl Homocysteine
Nucleosidase (mtan) Complexed With Butylthio-dadme-
Immucillin A
Length = 231
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 46/110 (41%), Gaps = 15/110 (13%)
Query: 17 IIIAMQTEAMPLVNKFELKEDQDSVFPEGVPWVRYHGTYKDLHLNIIWPGKDTSLEVDSV 76
II AMQ E L + L ED V G + Y G + G D L +
Sbjct: 5 IIGAMQQEVAILKD---LIEDVQEVNQAGCTF--YSGQIQ---------GVDVVLLQSGI 50
Query: 77 GTISASLVTYASIQALKPDLIINXXXXXXXXXXXXSIGDVFLISDVAFHD 126
G +SA+L T I PD++IN ++GDV + S+V HD
Sbjct: 51 GKVSAALGTALLISQYAPDVVIN-TGSAGGFDASLNVGDVVISSEVRHHD 99
>pdb|2WZM|A Chain A, Crystal Structure Of A Mycobacterium Aldo-Keto Reductase
In Its Apo And Liganded Form
pdb|2WZM|B Chain B, Crystal Structure Of A Mycobacterium Aldo-Keto Reductase
In Its Apo And Liganded Form
pdb|2WZT|A Chain A, Crystal Structure Of A Mycobacterium Aldo-keto Reductase
In Its Apo And Liganded Form
pdb|2WZT|B Chain B, Crystal Structure Of A Mycobacterium Aldo-keto Reductase
In Its Apo And Liganded Form
Length = 283
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 55 YKDLHLNIIWPGKDTSLEVDSVGTI 79
Y DL+L I WPG DTS VDS G +
Sbjct: 109 YVDLYL-IHWPGGDTSKYVDSWGGL 132
>pdb|4G89|A Chain A, Crystal Structure Of K. Pneumoniae MtaADOHCY NUCLEOSIDASE
IN COMPLEX With Fragmented S-Adenosyl-L-Homocysteine
pdb|4G89|B Chain B, Crystal Structure Of K. Pneumoniae MtaADOHCY NUCLEOSIDASE
IN COMPLEX With Fragmented S-Adenosyl-L-Homocysteine
Length = 237
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 66 GKDTSLEVDSVGTISASLVTYASIQALKPDLIINXXXXXXXXXXXXSIGDVFLISDVAFH 125
G D +L +G ++A++ ++ +PD+IIN +GD+ + + +H
Sbjct: 45 GVDVALLKSGIGKVAAAMGATLLLERCQPDVIIN-TGSAGGLASTLKVGDIVVSDEARYH 103
Query: 126 D 126
D
Sbjct: 104 D 104
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,892,156
Number of Sequences: 62578
Number of extensions: 174481
Number of successful extensions: 307
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 301
Number of HSP's gapped (non-prelim): 12
length of query: 193
length of database: 14,973,337
effective HSP length: 93
effective length of query: 100
effective length of database: 9,153,583
effective search space: 915358300
effective search space used: 915358300
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)