Query 029435
Match_columns 193
No_of_seqs 158 out of 1124
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 12:52:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029435.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029435hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02584 5'-methylthioadenosin 100.0 3.7E-40 8E-45 273.2 20.1 187 7-193 3-189 (249)
2 PRK06714 S-adenosylhomocystein 100.0 2.3E-36 5E-41 248.7 18.2 165 12-193 1-178 (236)
3 PRK14697 bifunctional 5'-methy 100.0 3E-36 6.6E-41 247.7 18.0 164 12-193 1-177 (233)
4 TIGR01704 MTA/SAH-Nsdase 5'-me 100.0 5.5E-36 1.2E-40 245.3 18.0 162 14-193 1-178 (228)
5 PRK07164 5'-methylthioadenosin 100.0 3.3E-34 7.1E-39 233.3 17.5 159 12-193 3-167 (218)
6 PRK06698 bifunctional 5'-methy 100.0 6.6E-34 1.4E-38 254.0 18.6 164 12-193 1-177 (459)
7 PRK05584 5'-methylthioadenosin 100.0 6.2E-33 1.3E-37 226.9 18.5 163 13-193 1-179 (230)
8 PRK11178 uridine phosphorylase 100.0 4E-32 8.7E-37 225.5 17.5 161 13-193 17-201 (251)
9 TIGR01718 Uridine-psphlse urid 100.0 8.3E-31 1.8E-35 216.9 16.2 164 10-193 9-195 (245)
10 COG0775 Pfs Nucleoside phospho 100.0 2.1E-30 4.5E-35 213.1 13.9 164 12-193 2-182 (234)
11 TIGR03664 fut_nucase futalosin 100.0 2.8E-30 6E-35 210.9 14.5 154 15-193 1-177 (222)
12 PRK13374 purine nucleoside pho 100.0 1.7E-29 3.7E-34 207.7 17.7 166 10-193 11-187 (233)
13 PRK05819 deoD purine nucleosid 100.0 3.1E-29 6.6E-34 206.4 18.3 170 6-193 6-186 (235)
14 PRK08236 hypothetical protein; 100.0 8.7E-29 1.9E-33 200.7 16.1 148 12-193 1-167 (212)
15 TIGR00107 deoD purine-nucleosi 100.0 1.4E-28 3.1E-33 202.0 17.1 166 10-193 7-183 (232)
16 PF01048 PNP_UDP_1: Phosphoryl 100.0 1.1E-27 2.3E-32 195.4 14.6 166 14-193 1-181 (234)
17 PRK07115 AMP nucleosidase; Pro 99.9 1.3E-26 2.8E-31 192.9 15.2 158 11-193 22-190 (258)
18 COG2820 Udp Uridine phosphoryl 99.9 4.4E-25 9.4E-30 178.4 14.4 161 13-193 17-198 (248)
19 PRK06026 5'-methylthioadenosin 99.9 3.1E-25 6.8E-30 179.1 11.3 134 13-192 11-153 (212)
20 TIGR01719 euk_UDPppase uridine 99.9 2.3E-24 4.9E-29 182.1 14.8 164 14-193 32-233 (287)
21 TIGR01705 MTA/SAH-nuc-hyp 5'-m 99.9 1.4E-24 3.1E-29 175.1 11.8 134 7-192 5-153 (212)
22 TIGR01721 AMN-like AMP nucleos 99.9 4.5E-23 9.7E-28 171.9 15.6 160 10-193 20-191 (266)
23 COG0813 DeoD Purine-nucleoside 99.9 2E-23 4.3E-28 166.7 12.5 173 3-193 4-187 (236)
24 PRK05634 nucleosidase; Provisi 99.9 9.2E-23 2E-27 162.3 11.9 131 12-193 3-138 (185)
25 PRK08292 AMP nucleosidase; Pro 99.9 3.4E-22 7.4E-27 176.9 13.3 132 46-193 263-415 (489)
26 PRK08666 5'-methylthioadenosin 99.9 7E-22 1.5E-26 165.0 13.0 161 12-192 1-188 (261)
27 TIGR01717 AMP-nucleosdse AMP n 99.9 1E-21 2.2E-26 173.4 13.2 132 46-193 251-403 (477)
28 TIGR01697 PNPH-PUNA-XAPA inosi 99.8 1.4E-20 3E-25 156.1 13.4 135 48-193 41-195 (248)
29 TIGR01700 PNPH purine nucleosi 99.8 6.6E-20 1.4E-24 152.1 14.1 134 48-192 41-194 (249)
30 TIGR03468 HpnG hopanoid-associ 99.8 2.9E-20 6.3E-25 150.9 11.0 132 14-193 3-138 (212)
31 TIGR01694 MTAP 5'-deoxy-5'-met 99.8 5E-20 1.1E-24 152.2 11.1 134 48-193 33-187 (241)
32 PRK07077 hypothetical protein; 99.8 3.6E-19 7.9E-24 146.4 13.3 135 10-192 7-148 (238)
33 PRK08202 purine nucleoside pho 99.8 2.2E-18 4.7E-23 144.8 15.7 164 13-192 22-216 (272)
34 TIGR01699 XAPA xanthosine phos 99.7 4.9E-16 1.1E-20 128.7 12.1 163 15-192 2-194 (248)
35 PRK09136 5'-methylthioadenosin 99.6 4.9E-15 1.1E-19 122.7 14.0 131 47-192 32-188 (245)
36 PRK08564 5'-methylthioadenosin 98.4 1.4E-05 3E-10 67.2 13.6 171 6-189 3-192 (267)
37 TIGR01698 PUNP purine nucleoti 98.2 0.00011 2.4E-09 60.7 16.3 133 48-189 41-180 (237)
38 KOG3728 Uridine phosphorylase 98.2 1.7E-05 3.7E-10 64.8 10.4 161 15-190 54-251 (308)
39 PRK07432 5'-methylthioadenosin 98.1 6.4E-05 1.4E-09 63.8 13.0 166 13-189 4-190 (290)
40 PRK07823 5'-methylthioadenosin 98.0 0.00034 7.5E-09 58.7 15.1 166 10-189 3-182 (264)
41 PF06516 NUP: Purine nucleosid 98.0 2.1E-05 4.6E-10 67.2 7.7 103 13-128 3-110 (314)
42 PRK08931 5'-methylthioadenosin 98.0 0.00011 2.4E-09 62.4 11.2 167 13-189 4-187 (289)
43 COG0005 Pnp Purine nucleoside 97.6 0.0023 4.9E-08 53.5 13.7 166 11-189 15-204 (262)
44 KOG3985 Methylthioadenosine ph 97.2 0.0064 1.4E-07 49.7 10.6 106 13-126 10-117 (283)
45 COG5042 NUP Purine nucleoside 96.2 0.0051 1.1E-07 51.8 3.4 101 13-127 38-143 (349)
46 KOG3984 Purine nucleoside phos 96.0 0.27 5.9E-06 40.7 12.7 105 10-121 22-134 (286)
47 COG2039 Pcp Pyrrolidone-carbox 85.1 2.7 5.9E-05 33.7 5.6 51 56-117 32-82 (207)
48 PF01470 Peptidase_C15: Pyrogl 83.3 5.1 0.00011 32.2 6.7 32 76-107 43-74 (202)
49 PRK13195 pyrrolidone-carboxyla 80.7 3.6 7.8E-05 33.8 4.9 34 81-116 49-82 (222)
50 PRK13196 pyrrolidone-carboxyla 79.7 5.1 0.00011 32.5 5.5 29 79-107 47-75 (211)
51 PRK13194 pyrrolidone-carboxyla 75.6 8.3 0.00018 31.2 5.6 32 76-107 43-74 (208)
52 PRK13193 pyrrolidone-carboxyla 75.2 8.7 0.00019 31.2 5.6 32 76-107 43-74 (209)
53 PRK00994 F420-dependent methyl 67.4 20 0.00043 30.0 6.0 43 59-108 33-75 (277)
54 TIGR00504 pyro_pdase pyrogluta 66.3 17 0.00038 29.4 5.6 28 80-107 45-72 (212)
55 PF00142 Fer4_NifH: 4Fe-4S iro 62.0 10 0.00022 32.1 3.5 33 69-102 4-36 (273)
56 PRK13197 pyrrolidone-carboxyla 60.8 24 0.00053 28.6 5.5 28 80-107 48-75 (215)
57 COG0381 WecB UDP-N-acetylgluco 58.4 33 0.00072 30.5 6.2 103 12-121 3-127 (383)
58 cd00501 Peptidase_C15 Pyroglut 58.1 32 0.0007 27.1 5.7 28 80-107 47-74 (194)
59 PRK13236 nitrogenase reductase 55.8 14 0.00031 31.2 3.5 27 73-99 14-40 (296)
60 COG0003 ArsA Predicted ATPase 55.2 15 0.00033 31.7 3.6 34 73-106 10-44 (322)
61 COG1927 Mtd Coenzyme F420-depe 54.7 35 0.00075 28.0 5.3 43 58-107 32-74 (277)
62 PRK06455 riboflavin synthase; 49.5 95 0.0021 24.0 6.8 32 76-107 39-70 (155)
63 CHL00072 chlL photochlorophyll 47.6 23 0.0005 29.9 3.5 28 70-97 5-32 (290)
64 PF02374 ArsA_ATPase: Anion-tr 46.1 26 0.00056 29.9 3.6 38 73-116 9-46 (305)
65 cd02117 NifH_like This family 43.9 30 0.00065 27.4 3.5 29 71-99 6-34 (212)
66 PRK13869 plasmid-partitioning 41.4 87 0.0019 27.8 6.3 34 59-98 122-155 (405)
67 COG1348 NifH Nitrogenase subun 40.7 28 0.0006 29.2 2.8 33 69-102 5-37 (278)
68 TIGR01287 nifH nitrogenase iro 40.6 34 0.00075 28.2 3.5 29 70-98 5-33 (275)
69 PF04989 CmcI: Cephalosporin h 38.9 34 0.00074 27.7 3.0 27 79-105 18-44 (206)
70 TIGR03568 NeuC_NnaA UDP-N-acet 38.5 51 0.0011 28.6 4.4 24 83-106 83-111 (365)
71 COG1731 Archaeal riboflavin sy 38.2 35 0.00075 25.9 2.7 28 80-107 43-70 (154)
72 PRK13235 nifH nitrogenase redu 38.1 40 0.00087 27.8 3.5 27 73-99 9-35 (274)
73 TIGR00853 pts-lac PTS system, 37.8 1.1E+02 0.0023 21.4 5.1 47 76-123 14-60 (95)
74 KOG3022 Predicted ATPase, nucl 37.7 72 0.0016 27.3 4.8 41 58-104 47-88 (300)
75 PF12641 Flavodoxin_3: Flavodo 37.6 38 0.00082 26.2 3.0 44 55-107 37-80 (160)
76 PF03808 Glyco_tran_WecB: Glyc 36.3 47 0.001 25.7 3.4 23 13-35 49-71 (172)
77 TIGR01957 nuoB_fam NADH-quinon 35.9 91 0.002 23.8 4.8 44 54-107 54-101 (145)
78 PHA02519 plasmid partition pro 35.8 1.6E+02 0.0034 26.1 7.0 34 59-98 107-140 (387)
79 COG2894 MinD Septum formation 35.3 70 0.0015 26.7 4.3 49 59-119 3-51 (272)
80 PF14492 EFG_II: Elongation Fa 34.6 1.4E+02 0.0029 19.7 5.8 70 11-98 4-73 (75)
81 PF01993 MTD: methylene-5,6,7, 33.0 1.3E+02 0.0027 25.3 5.4 44 57-107 30-73 (276)
82 PRK15116 sulfur acceptor prote 32.6 72 0.0016 26.8 4.1 44 76-119 129-172 (268)
83 TIGR02016 BchX chlorophyllide 31.6 58 0.0013 27.6 3.5 30 72-102 7-36 (296)
84 PRK13232 nifH nitrogenase redu 31.4 1.1E+02 0.0024 25.1 5.2 27 73-99 9-35 (273)
85 cd02032 Bchl_like This family 31.1 62 0.0013 26.5 3.5 27 72-98 7-33 (267)
86 TIGR01281 DPOR_bchL light-inde 31.1 59 0.0013 26.6 3.4 26 72-97 7-32 (268)
87 PRK13230 nitrogenase reductase 30.9 62 0.0014 26.7 3.5 27 73-99 9-35 (279)
88 CHL00175 minD septum-site dete 30.6 1.3E+02 0.0027 24.9 5.3 34 59-98 16-49 (281)
89 COG0455 flhG Antiactivator of 29.8 1.5E+02 0.0032 24.8 5.6 34 60-99 4-37 (262)
90 PRK10818 cell division inhibit 29.7 1.3E+02 0.0029 24.4 5.3 23 73-95 11-33 (270)
91 cd06533 Glyco_transf_WecG_TagA 29.4 2.6E+02 0.0057 21.4 6.8 23 13-35 47-69 (171)
92 PF02302 PTS_IIB: PTS system, 29.3 79 0.0017 21.0 3.3 49 76-125 10-59 (90)
93 cd00755 YgdL_like Family of ac 29.1 1.2E+02 0.0026 24.8 4.8 43 76-118 110-152 (231)
94 PRK11670 antiporter inner memb 28.2 1.5E+02 0.0031 26.1 5.5 33 58-96 107-139 (369)
95 PRK14818 NADH dehydrogenase su 28.1 97 0.0021 24.5 3.9 42 52-103 65-107 (173)
96 TIGR01968 minD_bact septum sit 28.0 1.6E+02 0.0034 23.6 5.4 26 73-98 10-35 (261)
97 PRK14815 NADH dehydrogenase su 27.2 1.4E+02 0.0031 23.7 4.7 42 56-107 72-117 (183)
98 COG0799 Uncharacterized homolo 26.6 90 0.002 22.9 3.3 51 59-119 35-88 (115)
99 TIGR01969 minD_arch cell divis 25.5 1.7E+02 0.0036 23.3 5.1 23 73-95 9-31 (251)
100 PRK13234 nifH nitrogenase redu 25.4 84 0.0018 26.4 3.4 27 73-99 12-38 (295)
101 cd02037 MRP-like MRP (Multiple 25.3 1.6E+02 0.0034 22.2 4.7 27 73-99 8-34 (169)
102 PRK10310 PTS system galactitol 25.2 1.9E+02 0.0042 19.9 4.7 49 76-125 13-62 (94)
103 PTZ00182 3-methyl-2-oxobutanat 25.0 59 0.0013 28.5 2.4 22 82-103 69-90 (355)
104 PRK14813 NADH dehydrogenase su 24.9 1.5E+02 0.0033 23.7 4.5 45 52-106 62-107 (189)
105 PRK14814 NADH dehydrogenase su 24.8 1.5E+02 0.0033 23.6 4.5 43 55-107 71-117 (186)
106 PF14582 Metallophos_3: Metall 24.2 60 0.0013 27.1 2.2 55 59-121 176-232 (255)
107 PHA02518 ParA-like protein; Pr 24.1 1.9E+02 0.0042 22.2 5.1 25 73-97 9-33 (211)
108 PF11858 DUF3378: Domain of un 24.0 2.4E+02 0.0052 19.2 5.9 45 17-66 4-48 (81)
109 PRK13233 nifH nitrogenase redu 23.8 1.8E+02 0.0039 23.8 5.1 27 73-99 10-37 (275)
110 PRK13705 plasmid-partitioning 23.6 3.3E+02 0.0071 24.0 6.9 27 73-99 115-141 (388)
111 CHL00023 ndhK NADH dehydrogena 23.5 1.3E+02 0.0027 24.8 3.9 46 52-107 66-115 (225)
112 cd02036 MinD Bacterial cell di 22.3 1.9E+02 0.0041 21.4 4.6 27 73-99 8-34 (179)
113 TIGR03029 EpsG chain length de 22.1 2.5E+02 0.0054 23.0 5.6 35 58-98 103-137 (274)
114 PRK13849 putative crown gall t 21.6 2.5E+02 0.0055 22.7 5.4 26 73-98 10-35 (231)
115 COG3260 Ni,Fe-hydrogenase III 21.4 2.1E+02 0.0045 21.9 4.4 31 76-106 58-89 (148)
116 PRK06411 NADH dehydrogenase su 21.1 1.4E+02 0.003 23.8 3.6 44 54-107 71-118 (183)
117 PRK13185 chlL protochlorophyll 21.0 2.5E+02 0.0054 22.8 5.4 26 73-98 10-35 (270)
118 TIGR03371 cellulose_yhjQ cellu 20.9 2.4E+02 0.0052 22.3 5.2 23 73-95 10-32 (246)
119 PF01656 CbiA: CobQ/CobB/MinD/ 20.7 2.6E+02 0.0056 21.0 5.1 27 73-99 7-33 (195)
120 cd05564 PTS_IIB_chitobiose_lic 20.3 2.4E+02 0.0053 19.4 4.4 48 76-124 10-57 (96)
No 1
>PLN02584 5'-methylthioadenosine nucleosidase
Probab=100.00 E-value=3.7e-40 Score=273.19 Aligned_cols=187 Identities=70% Similarity=1.034 Sum_probs=164.5
Q ss_pred cccCCCceEEEEeecHHHHHHHHHhccccccCCCCCCCCCCeEEEEEEECCEeEEEEecCCCCCCCCCCCCHHHHHHHHH
Q 029435 7 KSQEAISSVVIIIAMQTEAMPLVNKFELKEDQDSVFPEGVPWVRYHGTYKDLHLNIIWPGKDTSLEVDSVGTISASLVTY 86 (193)
Q Consensus 7 ~~~~~~~~i~Ii~A~~~E~~~l~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~~~G~~~~~~~~~iG~v~Aa~~~~ 86 (193)
-.++++++|+|++||++|++++++++...+.....|.+..++.+|+|+++|++|+++.+|+|++|.++|||++|||++++
T Consensus 3 ~~~~~~~~I~Ii~Am~~E~~~l~~~l~~~~~~~~~~~~~~~~~~~~G~~~g~~V~v~~sG~~~~~~i~~IGkvnAA~~~~ 82 (249)
T PLN02584 3 EEMRPISTVLIVIAMQAEAMPLVNALGLVEDVDSPFPKGVPWVRYSGTHKGLRVHVVCPGKDKALGVDSVGTVPASLVTY 82 (249)
T ss_pred cccCCCceEEEEEEcHHHHHHHHHHHhhhccccccccccCCeeEEEEEECCEEEEEEecCCccccccCccCHHHHHHHHH
Confidence 45789999999999999999999999888775444545678999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCEEEEEeeeCccCCCCCCcccEEEecceeEecCCCCccCccccCCCCCCCCCChhhhcCCceeEEEEEeccc
Q 029435 87 ASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVGQRQAFSTPNLLRELNLKVCKLSTGDS 166 (193)
Q Consensus 87 ~li~~~~~~~vi~~G~aG~l~~~~~~iGDvvi~~~~~~~d~~~~~~~f~~~~~~~~p~~~~~~L~~~~~~~~G~i~T~d~ 166 (193)
.+|++|+|+.|||+|+|||++++++++||+||++++++||.+...+.|+.|..++.|.++++.+.....++.|++.|+|+
T Consensus 83 ~li~~~~~~~II~~G~aG~l~~~~l~vGDvVia~~~~~~D~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~G~i~SgD~ 162 (249)
T PLN02584 83 AAIQALKPDLIINAGTAGGFKAKGAAIGDVFLATAVANHDRRIPIPVFDKYGVGTRDAFPTPNLIKALGLKEGVLSTGNS 162 (249)
T ss_pred HHHHhcCCCEEEEEecccCcCcCCCCcCCEEEECeeEecccCCCcccccccccCccccCCCHHHHhhCCCeEEEEEEeCE
Confidence 99999999999999999999833799999999999999998755456655777777777776666566789999999999
Q ss_pred eecChHhHHHHHhCCCeEEcccccccC
Q 029435 167 LDMSSQDETSITANDATIKDMEVRAEF 193 (193)
Q Consensus 167 ~i~~~~~~~~l~~~~~~~vDME~aAi~ 193 (193)
|+.+.+..+.+++++++++|||+||++
T Consensus 163 F~~~~~~~~~~~~~~a~~vDME~aAia 189 (249)
T PLN02584 163 LDMTEQDEESIKANDATVKDMEGAAVA 189 (249)
T ss_pred EeCCHHHHHHHHHcCCcEEechHHHHH
Confidence 998877666777789999999999974
No 2
>PRK06714 S-adenosylhomocysteine nucleosidase; Validated
Probab=100.00 E-value=2.3e-36 Score=248.75 Aligned_cols=165 Identities=19% Similarity=0.240 Sum_probs=137.8
Q ss_pred CceEEEEeecHHHHHHHHHhccccccCCCCCCCCCCeEEEEEEECCEeEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 029435 12 ISSVVIIIAMQTEAMPLVNKFELKEDQDSVFPEGVPWVRYHGTYKDLHLNIIWPGKDTSLEVDSVGTISASLVTYASIQA 91 (193)
Q Consensus 12 ~~~i~Ii~A~~~E~~~l~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~~~G~~~~~~~~~iG~v~Aa~~~~~li~~ 91 (193)
|++|+||+||++|+.++++.+...+.. ...+++||.|++++++|+++.|| |||+|||++++.||++
T Consensus 1 m~~IgIi~Am~~E~~~l~~~l~~~~~~-----~~~~~~~~~g~~~~~~vv~~~sG---------iGkvnAA~~~~~li~~ 66 (236)
T PRK06714 1 MKRIAIVAAWEPELTYLHQSYPSERIE-----KRAAWEFHFHTINDLEIISVITG---------VGKVSCASCVQLLISE 66 (236)
T ss_pred CCeEEEEeeCHHHHHHHHHhccccceE-----EEcCeEEEEEEECCEEEEEEeCC---------CCHHHHHHHHHHHHHh
Confidence 468999999999999999999776654 36889999999999999999999 9999999999999999
Q ss_pred hCCCEEEEEeeeCccCCCCCCcccEEEecceeEecCCCCccCccc--cC--CCCCCCCC-Chhhh-------cCCceeEE
Q 029435 92 LKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDL--YG--VGQRQAFS-TPNLL-------RELNLKVC 159 (193)
Q Consensus 92 ~~~~~vi~~G~aG~l~~~~~~iGDvvi~~~~~~~d~~~~~~~f~~--~~--~~~~p~~~-~~~L~-------~~~~~~~G 159 (193)
|+|+.|||+|+|||++ +++++|||||++++++||.+.+ .+.. |. .+..+.++ ++.|. ...+++.|
T Consensus 67 f~~~~IIn~G~aG~l~-~~l~iGDvVi~~~~~~~D~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~G 143 (236)
T PRK06714 67 FQPDELFMTGICGSLS-NKVKNGHIVVALNAIQHDVTAA--GSGEDVFNLYNGRTAPIETTKSLVRRIKKIRSYDPIHFG 143 (236)
T ss_pred CCCCEEEEEEcccCCC-CCCCCCCEEEECeeeeccCccc--cCCcccccccCCccccccCCHHHHHHHHHHhccCCeEEe
Confidence 9999999999999999 8999999999999999997654 2310 11 12222344 33332 23468999
Q ss_pred EEEeccceecChHhHHHHHh-CCCeEEcccccccC
Q 029435 160 KLSTGDSLDMSSQDETSITA-NDATIKDMEVRAEF 193 (193)
Q Consensus 160 ~i~T~d~~i~~~~~~~~l~~-~~~~~vDME~aAi~ 193 (193)
+++|||.|+.+.+.++.+.+ ++++++|||+||++
T Consensus 144 ~i~SgD~Fv~~~~~~~~l~~~~~a~~vdME~aAvA 178 (236)
T PRK06714 144 TFLSGDQRIRSSEMRYLLHTVYGALAVDQEVAAFA 178 (236)
T ss_pred EEEecCeecCCHHHHHHHHHHCCCeEEEehHHHHH
Confidence 99999999998887777765 69999999999973
No 3
>PRK14697 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Provisional
Probab=100.00 E-value=3e-36 Score=247.69 Aligned_cols=164 Identities=23% Similarity=0.306 Sum_probs=137.5
Q ss_pred CceEEEEeecHHHHHHHHHhccccccCCCCCCCCCCeEEEEEEECCEeEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 029435 12 ISSVVIIIAMQTEAMPLVNKFELKEDQDSVFPEGVPWVRYHGTYKDLHLNIIWPGKDTSLEVDSVGTISASLVTYASIQA 91 (193)
Q Consensus 12 ~~~i~Ii~A~~~E~~~l~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~~~G~~~~~~~~~iG~v~Aa~~~~~li~~ 91 (193)
|++|+||+||++|+++++++|...+... .++++||+|+++|++|+++.|| ||++|||++++.||++
T Consensus 1 ~~~i~Ii~Am~~E~~~l~~~l~~~~~~~-----~~~~~~~~G~~~g~~v~v~~sG---------iG~vnAA~~~~~li~~ 66 (233)
T PRK14697 1 MNRIGIIGAMQIEIDLLLEKLVVQEEQI-----IAGMPFYVGEFMGTEVIVTRCG---------VGKVNAAACTQTLIHK 66 (233)
T ss_pred CceEEEEecCHHHHHHHHHHhhccceEE-----ECCeEEEEEEECCEEEEEEECC---------CCHHHHHHHHHHHHHh
Confidence 5789999999999999999998776553 6789999999999999999999 9999999999999999
Q ss_pred hCCCEEEEEeeeCccCCCCCCcccEEEecceeEecCCCCccCccccCCCCCCCCC-Chhhh-----------cCCceeEE
Q 029435 92 LKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVGQRQAFS-TPNLL-----------RELNLKVC 159 (193)
Q Consensus 92 ~~~~~vi~~G~aG~l~~~~~~iGDvvi~~~~~~~d~~~~~~~f~~~~~~~~p~~~-~~~L~-----------~~~~~~~G 159 (193)
|+|+.||++|+|||++ +++++|||||++++++||.+.. .+..+.+. .+.|+ +.+|. .+.+++.|
T Consensus 67 f~~~~II~~G~AG~l~-~~l~iGDvVi~~~~~~~D~~~~--~~~~~~p~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~G 142 (233)
T PRK14697 67 FDVDAIINTGVAGGLH-PDVKVGDIVISTNVTHHDVSKT--QMKNLFPF-QEEFIASKELVELARKACNSSSLHIEIHEG 142 (233)
T ss_pred cCCCEEEEEecccCCC-CCCCcCCEEEECeeEEcCCChh--hhcccCCC-CcccCCCHHHHHHHHHHhhhccCCccEEEe
Confidence 9999999999999999 8999999999999999998754 11111111 11232 33331 14578999
Q ss_pred EEEeccceecChHhHHHHHh-CCCeEEcccccccC
Q 029435 160 KLSTGDSLDMSSQDETSITA-NDATIKDMEVRAEF 193 (193)
Q Consensus 160 ~i~T~d~~i~~~~~~~~l~~-~~~~~vDME~aAi~ 193 (193)
+++|||.|+.+++.++++.+ ++++++|||+||++
T Consensus 143 ~i~SgD~fi~~~~~~~~l~~~~~~~~vdME~aAva 177 (233)
T PRK14697 143 RIVSGECFVEDSKLKAKLIDEYAPHCTEMEGAAIG 177 (233)
T ss_pred EEEEcCeecCCHHHHHHHHHhcCCeEEEehHHHHH
Confidence 99999999999888887875 69999999999973
No 4
>TIGR01704 MTA/SAH-Nsdase 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase. There are homologs of this enzyme in plants, some of which score between trusted and noise cutoffs here, but there is no experimental evidence to validate this function at this time.
Probab=100.00 E-value=5.5e-36 Score=245.29 Aligned_cols=162 Identities=27% Similarity=0.371 Sum_probs=141.4
Q ss_pred eEEEEeecHHHHHHHHHhccccccCCCCCCCCCCeEEEEEEECCEeEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHHhC
Q 029435 14 SVVIIIAMQTEAMPLVNKFELKEDQDSVFPEGVPWVRYHGTYKDLHLNIIWPGKDTSLEVDSVGTISASLVTYASIQALK 93 (193)
Q Consensus 14 ~i~Ii~A~~~E~~~l~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~~~G~~~~~~~~~iG~v~Aa~~~~~li~~~~ 93 (193)
+|+||+||++|++++++.+...+... ..++++|+|+++|++|+++.+| ||++|||+++++||++|+
T Consensus 1 ~i~ii~Am~~E~~~l~~~l~~~~~~~-----~~~~~~~~g~~~g~~v~i~~sG---------iG~vnAA~~~~~li~~~~ 66 (228)
T TIGR01704 1 KIGIIGAMEEEVTLLRDKIENRQTIS-----LGGCEIYTGQLNGTEVALLKSG---------IGKVAAALGATLLLEHCK 66 (228)
T ss_pred CEEEEecCHHHHHHHHHHhhcCceEE-----ECCeEEEEEEECCEEEEEEECC---------CCHHHHHHHHHHHHHhCC
Confidence 39999999999999999998877653 5679999999999999999999 999999999999999999
Q ss_pred CCEEEEEeeeCccCCCCCCcccEEEecceeEecCCCCccCccccCCCCCCCCC-----Chhhh---------cCCceeEE
Q 029435 94 PDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVGQRQAFS-----TPNLL---------RELNLKVC 159 (193)
Q Consensus 94 ~~~vi~~G~aG~l~~~~~~iGDvvi~~~~~~~d~~~~~~~f~~~~~~~~p~~~-----~~~L~---------~~~~~~~G 159 (193)
|+.||++|+|||++ +++++||+||++++++||.+.+ .| .|..|+.|..| +++|. .+.+++.|
T Consensus 67 p~~II~~G~aG~l~-~~l~~GDvvi~~~~~~~d~~~~--~~-~~~~g~~~~~~~~~~~d~~L~~~~~~~~~~~~~~~~~G 142 (228)
T TIGR01704 67 PDVIINTGSAGGLA-PTLKVGDIVVSDEARYHDADVT--AF-GYEYGQLPGCPAGFKADDKLIAAAEACIAELNLNAVRG 142 (228)
T ss_pred CCEEEEEeeccCCC-CCCccCCEEEEEEEEEccCccc--cc-CCcCCcCCCCCceeeCCHHHHHHHHHHHHhcCCCeEEE
Confidence 99999999999999 8999999999999999998765 45 36666666433 33332 25678999
Q ss_pred EEEeccceecChHhHHHHHh-C-CCeEEcccccccC
Q 029435 160 KLSTGDSLDMSSQDETSITA-N-DATIKDMEVRAEF 193 (193)
Q Consensus 160 ~i~T~d~~i~~~~~~~~l~~-~-~~~~vDME~aAi~ 193 (193)
+++|+|.|+.+++++++|++ + +++++|||+||++
T Consensus 143 ~i~T~d~f~~~~~~~~~l~~~~~~~~~vdME~aAva 178 (228)
T TIGR01704 143 LIVSGDAFINGSVGLAKIRHNFPQAIAVEMEATAIA 178 (228)
T ss_pred EEEEcChhcCCHHHHHHHHHHCCcccEecccHHHHH
Confidence 99999999999988888876 5 8999999999974
No 5
>PRK07164 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Provisional
Probab=100.00 E-value=3.3e-34 Score=233.30 Aligned_cols=159 Identities=24% Similarity=0.252 Sum_probs=135.0
Q ss_pred CceEEEEeecHHHHHHHHHh-ccccccCCCCCCCCCCeEEEEEEECCEeEEEEecCCCCCCCCCCCCHHHHHHHHHHHHH
Q 029435 12 ISSVVIIIAMQTEAMPLVNK-FELKEDQDSVFPEGVPWVRYHGTYKDLHLNIIWPGKDTSLEVDSVGTISASLVTYASIQ 90 (193)
Q Consensus 12 ~~~i~Ii~A~~~E~~~l~~~-l~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~~~G~~~~~~~~~iG~v~Aa~~~~~li~ 90 (193)
.++|+||+||++|++++.+. +...+... ..++++|+|+++|++|+++.|| ||++|||++++.||+
T Consensus 3 ~~~I~ii~Am~~E~~~l~~~~~~~~~~~~-----~~~~~~y~~~~~g~~v~~~~sG---------iGkv~aa~~~~~lI~ 68 (218)
T PRK07164 3 EKIIAIIYADNNEFVNLENFEFILLKNIE-----SFQKKIAIFRYKNYNILYINTG---------IGLINAALATQKLIE 68 (218)
T ss_pred ccEEEEEeeCHHHHHHHHHhhhhcceeEE-----ecCceEEEEEECCEEEEEEECC---------CCHHHHHHHHHHHHH
Confidence 35799999999999999987 65544432 5679999999999999999999 999999999999999
Q ss_pred HhCCCEEEEEeeeCccCCCCCCcccEEEecceeEecCCCCccCccccCCCCCCCCC----ChhhhcCCceeEEEEEeccc
Q 029435 91 ALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVGQRQAFS----TPNLLRELNLKVCKLSTGDS 166 (193)
Q Consensus 91 ~~~~~~vi~~G~aG~l~~~~~~iGDvvi~~~~~~~d~~~~~~~f~~~~~~~~p~~~----~~~L~~~~~~~~G~i~T~d~ 166 (193)
+|+|+.|||+|+|||+ +++++||+|+++++++||.+.. + |..++.|..+ +..+ ...++.|.++|||.
T Consensus 69 ~~~~~~iI~~G~aG~l--~~~~~gdvvi~~~~~~~D~~~~---~--~~~g~~p~~~~~~~~~~~--~~~~~~~~i~SgD~ 139 (218)
T PRK07164 69 KYQIEIIINYGAVGSN--INIDLGQVVYPEKFYLLDAITP---W--YPPGQTPGEKEFYENNKI--NKNFNKIHLGSSNS 139 (218)
T ss_pred HcCCCEEEEEEcccCc--CCCCCCCEEEEeeeEEcccCCc---C--CCcccCCCCcccccchhh--hcCCcEEEEEeCCc
Confidence 9999999999999999 4899999999999999998532 3 5667766532 2223 23456889999999
Q ss_pred eecChHhHHHHHhC-CCeEEcccccccC
Q 029435 167 LDMSSQDETSITAN-DATIKDMEVRAEF 193 (193)
Q Consensus 167 ~i~~~~~~~~l~~~-~~~~vDME~aAi~ 193 (193)
|+.+.+++++|+++ +++++|||+||++
T Consensus 140 Fi~~~~~~~~l~~~~~a~~vDME~aAia 167 (218)
T PRK07164 140 FIFDLDKLKIIKDFIFVSFFDMEAFALA 167 (218)
T ss_pred cCCCHHHHHHHHhcCCCcEEEchHHHHH
Confidence 99998888888777 9999999999974
No 6
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=100.00 E-value=6.6e-34 Score=254.04 Aligned_cols=164 Identities=24% Similarity=0.315 Sum_probs=138.8
Q ss_pred CceEEEEeecHHHHHHHHHhccccccCCCCCCCCCCeEEEEEEECCEeEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 029435 12 ISSVVIIIAMQTEAMPLVNKFELKEDQDSVFPEGVPWVRYHGTYKDLHLNIIWPGKDTSLEVDSVGTISASLVTYASIQA 91 (193)
Q Consensus 12 ~~~i~Ii~A~~~E~~~l~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~~~G~~~~~~~~~iG~v~Aa~~~~~li~~ 91 (193)
|++|+||+||++|+.+++++|...+... .+++.||+|+++|++|+++.|| ||++|||++++.||++
T Consensus 1 ~~~i~ii~Am~~E~~~~~~~l~~~~~~~-----~~~~~~~~G~~~g~~v~v~~sG---------iG~v~AA~~~~~li~~ 66 (459)
T PRK06698 1 MNRIGIIGAMQIEIDLLLEKLIMQEEQI-----IAGMPFYVGEFMGTEVIVTRCG---------VGKVNAAACTQTLIHK 66 (459)
T ss_pred CCeEEEEeeCHHHHHHHHHHhhccceEE-----ECCeEEEEEEECCEEEEEEECC---------CCHHHHHHHHHHHHHh
Confidence 5789999999999999999998776543 6889999999999999999999 9999999999999999
Q ss_pred hCCCEEEEEeeeCccCCCCCCcccEEEecceeEecCCCCccCccccCCCCCCCC-CChhhh-----------cCCceeEE
Q 029435 92 LKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVGQRQAF-STPNLL-----------RELNLKVC 159 (193)
Q Consensus 92 ~~~~~vi~~G~aG~l~~~~~~iGDvvi~~~~~~~d~~~~~~~f~~~~~~~~p~~-~~~~L~-----------~~~~~~~G 159 (193)
|+|+.||++|+|||++ +++++|||||++++++||.+.+ .+..+.+.. +.| ++..|. .+.+++.|
T Consensus 67 ~~~~~ii~~G~aG~l~-~~l~~gDvvi~~~~~~~d~~~~--~~~~~~~~~-~~~~~d~~l~~~~~~~~~~~~~~~~~~~G 142 (459)
T PRK06698 67 FDVDAIINTGVAGGLH-PDVKVGDIVISTNVTHHDVSKT--QMKNLFPFQ-EEFIASKELVELARKACNSSSLHMEIHEG 142 (459)
T ss_pred cCCCEEEEEecccCCC-CCCcCCCEEEEceeEEccCCcc--ccCCcCCCC-CCcCCCHHHHHHHHHHHHhccCCccEEEe
Confidence 9999999999999999 8999999999999999998754 232221111 123 343331 13578999
Q ss_pred EEEeccceecChHhHHHHHh-CCCeEEcccccccC
Q 029435 160 KLSTGDSLDMSSQDETSITA-NDATIKDMEVRAEF 193 (193)
Q Consensus 160 ~i~T~d~~i~~~~~~~~l~~-~~~~~vDME~aAi~ 193 (193)
+++|||.|+.+++.+++|.+ ++++++|||+||++
T Consensus 143 ~i~sgd~f~~~~~~~~~l~~~~~a~~veME~aava 177 (459)
T PRK06698 143 RIVSGECFVEDSKLKAKLIDEYAPHCTEMEGAAIG 177 (459)
T ss_pred eEEecCeecCCHHHHHHHHHHcCCcEEehhhHHHH
Confidence 99999999999888888875 69999999999973
No 7
>PRK05584 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Validated
Probab=100.00 E-value=6.2e-33 Score=226.94 Aligned_cols=163 Identities=29% Similarity=0.415 Sum_probs=139.4
Q ss_pred ceEEEEeecHHHHHHHHHhccccccCCCCCCCCCCeEEEEEEECCEeEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHHh
Q 029435 13 SSVVIIIAMQTEAMPLVNKFELKEDQDSVFPEGVPWVRYHGTYKDLHLNIIWPGKDTSLEVDSVGTISASLVTYASIQAL 92 (193)
Q Consensus 13 ~~i~Ii~A~~~E~~~l~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~~~G~~~~~~~~~iG~v~Aa~~~~~li~~~ 92 (193)
++|+|++||++|++++++++...+... ..++.||+|+++|++|+++.+| ||++|||++++.++.+|
T Consensus 1 ~~i~ii~A~~~E~~~l~~~~~~~~~~~-----~~~~~~~~g~~~g~~v~v~~tG---------~G~~~aa~~~~~li~~~ 66 (230)
T PRK05584 1 MKIGIIGAMEEEVTLLLDKLENAQTIT-----LAGREFYTGTLHGHEVVLVLSG---------IGKVAAALTATILIEHF 66 (230)
T ss_pred CeEEEEccCHHHHHHHHHHhhccceEe-----cCCcEEEEEEECCEEEEEEECC---------cCHHHHHHHHHHHHHhc
Confidence 469999999999999999998776543 5689999999999999999999 99999999999999999
Q ss_pred CCCEEEEEeeeCccCCCCCCcccEEEecceeEecCCCCccCccccCCCCCCC----C-CChhhh---------cCCceeE
Q 029435 93 KPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVGQRQA----F-STPNLL---------RELNLKV 158 (193)
Q Consensus 93 ~~~~vi~~G~aG~l~~~~~~iGDvvi~~~~~~~d~~~~~~~f~~~~~~~~p~----~-~~~~L~---------~~~~~~~ 158 (193)
+|+.||++|+||+++ +++++||++++++++++|.+.+ .| ++..+..|. | +++.|. .+++++.
T Consensus 67 ~~~~ii~~G~aG~l~-~~~~~GDvvi~~~~~~~d~~~~--~~-~~~~~~~~~~~~~~~~d~~L~~~~~~~~~~~~~~~~~ 142 (230)
T PRK05584 67 KVDAVINTGVAGGLA-PGLKVGDVVVADELVQHDVDVT--AF-GYPYGQVPGLPAAFKADEKLVALAEKAAKELNLNVHR 142 (230)
T ss_pred CCCEEEEEEecCCCC-CCCccCCEEEECeEEEeccCcc--cc-CCcCCccCCCCcceeCCHHHHHHHHHHHHhcCCcEEE
Confidence 999999999999999 8999999999999999998654 33 233344443 2 244442 2578999
Q ss_pred EEEEeccceecChHhHHHHHh-C-CCeEEcccccccC
Q 029435 159 CKLSTGDSLDMSSQDETSITA-N-DATIKDMEVRAEF 193 (193)
Q Consensus 159 G~i~T~d~~i~~~~~~~~l~~-~-~~~~vDME~aAi~ 193 (193)
|.++|+|+|+.+.++.+.+++ + +++++|||+||++
T Consensus 143 G~~~s~d~f~~~~~~~~~l~~~~~~~~~veME~aa~a 179 (230)
T PRK05584 143 GLIASGDQFIAGAEKVAAIRAEFPDALAVEMEGAAIA 179 (230)
T ss_pred EEEEEcchhcCCHHHHHHHHHhCCCCeEEechHHHHH
Confidence 999999999999988888886 6 9999999999974
No 8
>PRK11178 uridine phosphorylase; Provisional
Probab=100.00 E-value=4e-32 Score=225.45 Aligned_cols=161 Identities=13% Similarity=0.112 Sum_probs=135.6
Q ss_pred ceEEEEeecHHHHHHHHHhccccccCCCCCCCCCCeEEEEEEECCEeEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHHh
Q 029435 13 SSVVIIIAMQTEAMPLVNKFELKEDQDSVFPEGVPWVRYHGTYKDLHLNIIWPGKDTSLEVDSVGTISASLVTYASIQAL 92 (193)
Q Consensus 13 ~~i~Ii~A~~~E~~~l~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~~~G~~~~~~~~~iG~v~Aa~~~~~li~~~ 92 (193)
++|+|+++|++|++.+.+.|...+... +.+.+.+|+|+|+|++|+++.+| ||++|||+++++|+. +
T Consensus 17 ~~i~Ii~g~p~e~~~ia~~l~~~~~~~----~~~~~~~~~G~~~g~~v~v~~~G---------iG~~~Aa~~~~eLi~-~ 82 (251)
T PRK11178 17 ATLAIVPGDPERVEKIAALMDNPVFLA----SHREFTSWRAELDGKPVIVCSTG---------IGGPSTSIAVEELAQ-L 82 (251)
T ss_pred CCEEEECCCHHHHHHHHHHhccchhee----eccCeEEEEEEEcCEEEEEEecC---------CCHHHHHHHHHHHHH-c
Confidence 579999999999999999998776543 36889999999999999999999 999999999999985 7
Q ss_pred CCCEEEEEeeeCccCCCCCCcccEEEecceeEecCCCCccCccccCCCCCCCCCCh----hhh-----cCCceeEEEEEe
Q 029435 93 KPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVGQRQAFSTP----NLL-----RELNLKVCKLST 163 (193)
Q Consensus 93 ~~~~vi~~G~aG~l~~~~~~iGDvvi~~~~~~~d~~~~~~~f~~~~~~~~p~~~~~----~L~-----~~~~~~~G~i~T 163 (193)
+|+.||++|+|||++ +++++||+||+++++++|.... .|.+++.|..++. .|. .+.+++.|+++|
T Consensus 83 g~~~iI~~GtaG~l~-~~l~~GDvVI~~~a~~~Dg~s~-----~y~~~~~p~~~~~~~~~~L~~~~~~~~~~~~~G~i~S 156 (251)
T PRK11178 83 GVRTFLRIGTTGAIQ-PHINVGDVLVTTASVRLDGASL-----HFAPLEFPAVADFECTTALVEAAKSIGATTHVGVTAS 156 (251)
T ss_pred CCCEEEEEeccccCC-CCCCCCCEEEecceecCCCCcc-----ccCCCCcCCCCCHHHHHHHHHHHHHcCCCEEEEEEee
Confidence 999999999999999 8999999999999999997533 3666777765542 221 267899999999
Q ss_pred ccceecChHh---------------HHHHHhCCCeEEcccccccC
Q 029435 164 GDSLDMSSQD---------------ETSITANDATIKDMEVRAEF 193 (193)
Q Consensus 164 ~d~~i~~~~~---------------~~~l~~~~~~~vDME~aAi~ 193 (193)
+|.|+.+.++ .+.+++++++++|||+||++
T Consensus 157 ~D~Fy~~~~~~~~~~~~i~~~~~~~~~~~~~~g~~avEMEsAAla 201 (251)
T PRK11178 157 SDTFYPGQERYDTYSGRVVRRFKGSMEEWQAMGVMNYEMESATLL 201 (251)
T ss_pred cCcccCCCCccccccccchhhHHHHHHHHHHcCCeEEehhHHHHH
Confidence 9999976532 23444569999999999974
No 9
>TIGR01718 Uridine-psphlse uridine phosphorylase. Sequences from Clostridium, Streptomyces, Treponema, Halobacterium and Pyrobaculum were included above trusted on the basis of sequence homology and a PAM-based neighbor-joining tree. A clade including second sequences from Halobacterium and Vibrio was somewhat more distantly related and may represent a slightly different substrate specificity - these were placed below the noise cutoff. More distantly related is a clade of archaeal sequences which as related to the DeoD family of inosine phosphorylases (TIGR00107) as they are to these uridine phosphorylases. This clade includes a characterized protein from Sulfolobus solfataricus which has been mis-named as a methylthioadenosine phosphorylase, but which acts on inosine and guanosine - it is unclear whether uridine has been evaluated as a substrate.
Probab=99.97 E-value=8.3e-31 Score=216.90 Aligned_cols=164 Identities=16% Similarity=0.208 Sum_probs=137.6
Q ss_pred CCCceEEEEeecHHHHHHHHHhccccccCCCCCCCCCCeEEEEEEECCEeEEEEecCCCCCCCCCCCCHHHHHHHHHHHH
Q 029435 10 EAISSVVIIIAMQTEAMPLVNKFELKEDQDSVFPEGVPWVRYHGTYKDLHLNIIWPGKDTSLEVDSVGTISASLVTYASI 89 (193)
Q Consensus 10 ~~~~~i~Ii~A~~~E~~~l~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~~~G~~~~~~~~~iG~v~Aa~~~~~li 89 (193)
..+.+..|++++++|++.+.+.|++.+... ..+.+.+|+|+++|++|+++.+| ||++||++++++|+
T Consensus 9 ~d~~~~vi~~Gdp~r~~~ia~~l~~~~~~~----~~r~~~~~~G~~~g~~v~v~~~G---------iG~~~aai~~~eLi 75 (245)
T TIGR01718 9 NDIQTYVILPGDPDRVEKIAAHMDKPVKVA----SNREFVTYRGELDGKPVIVCSTG---------IGGPSTAIAVEELA 75 (245)
T ss_pred hhcCCeEEecCCHHHHHHHHHhcCCcEEEe----ccCCEEEEEEEECCEEEEEEcCC---------CCHHHHHHHHHHHH
Confidence 356789999999999999999997776433 36789999999999999999999 99999999999999
Q ss_pred HHhCCCEEEEEeeeCccCCCCCCcccEEEecceeEecCCCCccCccccCCCCCCCCCChhhh---------cCCceeEEE
Q 029435 90 QALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVGQRQAFSTPNLL---------RELNLKVCK 160 (193)
Q Consensus 90 ~~~~~~~vi~~G~aG~l~~~~~~iGDvvi~~~~~~~d~~~~~~~f~~~~~~~~p~~~~~~L~---------~~~~~~~G~ 160 (193)
+ ++++.||++|+|||++ +++++||+||+++++++|.. + + .|.++..|..++..+. .+.+++.|+
T Consensus 76 ~-~g~~~iIr~GtaG~l~-~~~~~GDiVI~~~a~~~Dg~-~---~-~y~~~~~p~~~d~~l~~~l~~~~~~~~~~~~~G~ 148 (245)
T TIGR01718 76 Q-LGARTFIRVGTTGAIQ-PHINVGDVLITTAAVRLDGA-S---L-HYAPLEFPAVADFEVTTALVEAAESIGVRHHVGV 148 (245)
T ss_pred H-hCCCEEEEeeccccCC-CCCCCCCEEEeCceecCCCc-c---c-ccCCCCcCCCCCHHHHHHHHHHHHHcCCCeEEEE
Confidence 6 8999999999999999 89999999999999999964 2 2 3666667766654331 267899999
Q ss_pred EEeccceecChHh--------------HHHHHhCCCeEEcccccccC
Q 029435 161 LSTGDSLDMSSQD--------------ETSITANDATIKDMEVRAEF 193 (193)
Q Consensus 161 i~T~d~~i~~~~~--------------~~~l~~~~~~~vDME~aAi~ 193 (193)
++|+|.|+.+.++ .+.+++++++++|||+||++
T Consensus 149 v~T~D~F~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vEME~aal~ 195 (245)
T TIGR01718 149 VASSDTFYPGQERDTYSGRVVRHFKGSMEAWQAMGVLNYEMESATLF 195 (245)
T ss_pred EEECCcCcCCCCccccccccchhHHHHHHHHHHcCceEehhhHHHHH
Confidence 9999999976532 12344569999999999975
No 10
>COG0775 Pfs Nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=99.97 E-value=2.1e-30 Score=213.14 Aligned_cols=164 Identities=27% Similarity=0.377 Sum_probs=142.1
Q ss_pred CceEEEEeecHHHHHHHHHhccccccCCCCCCCCCCeEEEEEEECCEeEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 029435 12 ISSVVIIIAMQTEAMPLVNKFELKEDQDSVFPEGVPWVRYHGTYKDLHLNIIWPGKDTSLEVDSVGTISASLVTYASIQA 91 (193)
Q Consensus 12 ~~~i~Ii~A~~~E~~~l~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~~~G~~~~~~~~~iG~v~Aa~~~~~li~~ 91 (193)
.++++|+.||++|...+.+.+.+.+... ..+..||.|++.+++++++.+| ||+|+||.+++.+|+.
T Consensus 2 ~~~i~Ii~a~~~e~~~l~~~~~~~~~~~-----~~~~~~~~g~~~~~~vvl~~sg---------IG~v~aA~~t~~~i~~ 67 (234)
T COG0775 2 NMKIGIIGAMEEEVELLLELLGDAEEIA-----IAGTKFYTGQMAGKEVVLVLSG---------IGKVNAALTTTLLLAK 67 (234)
T ss_pred CeEeehHHhhHHHHHHHHhhccCceEEE-----ecceEEEEEEEcCeEEEEEEeC---------cCHHHHHHHHHHHHHh
Confidence 3689999999999999999885555442 4558999999999999999999 9999999999999999
Q ss_pred hCCCEEEEEeeeCccCCCCCCcccEEEecceeEecCCCCccCccccCCCCCC-CCC-----Chhhh---------cCCce
Q 029435 92 LKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVGQRQ-AFS-----TPNLL---------RELNL 156 (193)
Q Consensus 92 ~~~~~vi~~G~aG~l~~~~~~iGDvvi~~~~~~~d~~~~~~~f~~~~~~~~p-~~~-----~~~L~---------~~~~~ 156 (193)
|+|+.|||+|+|||++ +++++||+|+++++.+||.+.+ .|. |+.|+.| ..| ++.+. ...++
T Consensus 68 ~~p~~iI~~G~aGgl~-~~~~iGDvvvs~~~~~~D~d~~--~~~-~~~g~~p~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 143 (234)
T COG0775 68 FSPDAVINTGSAGGLV-SSLAIGDVVVSDALSYHDVDLT--AFG-YEIGQIPTGEPALFEADEELLDLAGEVAGEGKLRL 143 (234)
T ss_pred cCCCEEEEeeeccCcC-CCCccccEEEEhhHhhhhcccc--ccc-ccCCCCCCccchhccccHHHHHHHHHHHHhcCcce
Confidence 9999999999999999 8999999999999999999987 675 8888888 322 23331 15689
Q ss_pred eEEEEEeccceecChHhHHHHHh-C-CCeEEcccccccC
Q 029435 157 KVCKLSTGDSLDMSSQDETSITA-N-DATIKDMEVRAEF 193 (193)
Q Consensus 157 ~~G~i~T~d~~i~~~~~~~~l~~-~-~~~~vDME~aAi~ 193 (193)
+.|+++|||+|+.+.+...++++ + ++.++|||+||++
T Consensus 144 ~~Gli~tgd~fv~~~~~~~~~~~~~~~a~aveME~aaia 182 (234)
T COG0775 144 RTGLIVTGDRFVTLGEPVAKLRKAFPDALAVEMEGAAIA 182 (234)
T ss_pred eEEEEEcchhhhhcchhHHHHHHHCCCcEEEEecHHHHH
Confidence 99999999999998887677775 6 9999999999974
No 11
>TIGR03664 fut_nucase futalosine nucleosidase. This enzyme catalyzes the conversion of futalosine to de-hypoxanthine futalosine in a pathway for the biosynthesis of menaquinone distinct from the pathway observed in E. coli.
Probab=99.97 E-value=2.8e-30 Score=210.91 Aligned_cols=154 Identities=24% Similarity=0.339 Sum_probs=125.8
Q ss_pred EEEEeecHHHHHHHHHhccccccCCCCCCCCCCeEEEEEEECCEeEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHHhCC
Q 029435 15 VVIIIAMQTEAMPLVNKFELKEDQDSVFPEGVPWVRYHGTYKDLHLNIIWPGKDTSLEVDSVGTISASLVTYASIQALKP 94 (193)
Q Consensus 15 i~Ii~A~~~E~~~l~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~~~G~~~~~~~~~iG~v~Aa~~~~~li~~~~~ 94 (193)
|+|++||+.|++++++.|+.. |+|+++|++|+++.+| ||++|||++++.+|.+|+|
T Consensus 1 ~~Ii~A~~~E~~~~~~~~~~~---------------~~G~~~g~~v~v~~tG---------iG~v~aA~~~~~~i~~~~~ 56 (222)
T TIGR03664 1 ILIVTAVTAEASALLRGLGGR---------------YAGSVGGAGFDVLVTG---------VGPVNAAAATARLLARAPY 56 (222)
T ss_pred CEEEEeCHHHHHHHHHhcCCC---------------cceeeCCeeEEEEECC---------cCHHHHHHHHHHHHHhCCC
Confidence 689999999999999988633 7889999999999999 9999999999999999999
Q ss_pred CEEEEEeeeCccCCCCCCcccEEEecceeEecCCCCcc-Cccc---cCCCCC--------CCCC-Chhhh---------c
Q 029435 95 DLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIP-VFDL---YGVGQR--------QAFS-TPNLL---------R 152 (193)
Q Consensus 95 ~~vi~~G~aG~l~~~~~~iGDvvi~~~~~~~d~~~~~~-~f~~---~~~~~~--------p~~~-~~~L~---------~ 152 (193)
+.||++|+|||++ +++++||+|+++++++||.+...+ .|.. ...+.. ..++ ++.|. .
T Consensus 57 ~~ii~~G~aG~l~-~~~~~GDvvv~~~~~~~d~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~L~~~~~~~~~~~ 135 (222)
T TIGR03664 57 ELVINAGIAGGFP-GSAAVGDLVVADSEIAADLGAETPEGFLPLEALGFPQLPGGGSSYFNRIPLDPDLVERAVQLLRAL 135 (222)
T ss_pred CEEEEEEEcccCC-CCCCCcCEEEeeeEEEcccCccCCCCccccccCCCCcCCCCCccccccccCCHHHHHHHHHHhhcc
Confidence 9999999999999 899999999999999999764211 1110 111110 0144 44432 2
Q ss_pred CCceeEEEEEeccceecChHhHHHHHh-CCCeEEcccccccC
Q 029435 153 ELNLKVCKLSTGDSLDMSSQDETSITA-NDATIKDMEVRAEF 193 (193)
Q Consensus 153 ~~~~~~G~i~T~d~~i~~~~~~~~l~~-~~~~~vDME~aAi~ 193 (193)
+++++.|+++|+|.|+.+.+.++.+.+ ++++++|||+||++
T Consensus 136 ~~~~~~G~i~T~d~~~~~~~~~~~l~~~~~a~aveMEsaava 177 (222)
T TIGR03664 136 GLPVARGPFLTVSTVSGTAARAEALARRFGAVAENMEGFAVA 177 (222)
T ss_pred CcceeEeeeeeecceeCCHHHHHHHHHhcchHHHHhhHHHHH
Confidence 467999999999999999887777765 59999999999974
No 12
>PRK13374 purine nucleoside phosphorylase; Provisional
Probab=99.97 E-value=1.7e-29 Score=207.66 Aligned_cols=166 Identities=17% Similarity=0.212 Sum_probs=134.6
Q ss_pred CCCceEEEEeecHHHHHHHHH-hccccccCCCCCCCCCCeEEEEEEECCEeEEEEecCCCCCCCCCCCCHHHHHHHHHHH
Q 029435 10 EAISSVVIIIAMQTEAMPLVN-KFELKEDQDSVFPEGVPWVRYHGTYKDLHLNIIWPGKDTSLEVDSVGTISASLVTYAS 88 (193)
Q Consensus 10 ~~~~~i~Ii~A~~~E~~~l~~-~l~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~~~G~~~~~~~~~iG~v~Aa~~~~~l 88 (193)
..+.+++|++..+..++.+.+ .+++.+... +.+++.+|+|+|+|++|+++.+| ||++|||+++++|
T Consensus 11 ~~~~~~vi~~Gdp~R~~~~a~~~~~~~~~~~----~~~~~~~~~G~~~g~~v~v~~~G---------iG~~~Aai~~~eL 77 (233)
T PRK13374 11 GDFAETVLMPGDPLRAKYIAETYLEDVVQVT----DVRNMFGFTGTYKGKKVSVMGHG---------MGIPSMVIYVHEL 77 (233)
T ss_pred hhcCCeEEecCCHHHHHHHHHHHhcCceeee----cccceEEEEEEECCEEEEEEeCC---------CCHhHHHHHHHHH
Confidence 346789999999999999985 677766543 57899999999999999999999 9999999999999
Q ss_pred HHHhCCCEEEEEeeeCccCCCCCCcccEEEecceeEecCCCCccCccccCCCCCCCCCChhhh---------cCCceeEE
Q 029435 89 IQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVGQRQAFSTPNLL---------RELNLKVC 159 (193)
Q Consensus 89 i~~~~~~~vi~~G~aG~l~~~~~~iGDvvi~~~~~~~d~~~~~~~f~~~~~~~~p~~~~~~L~---------~~~~~~~G 159 (193)
|++|+|+.||++|+|||++ +++++||+||++.+. +|.+.. .+ .+.....|..+++.|. .+++++.|
T Consensus 78 i~~~g~~~iI~~GtaG~l~-~~l~~GDvVI~~~a~-~d~~~~--~~-~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~G 152 (233)
T PRK13374 78 IATFGVKNIIRVGSCGATQ-DDVKLMDVIIAQGAS-TDSKTN--RI-RFSGHDFAAIADYQLLEKAVETAREKGVPVKVG 152 (233)
T ss_pred HHHcCCcEEEEEeccccCC-CCCCCCCEEEEeeeE-ecCchh--hh-ccCCCCcCCCCCHHHHHHHHHHHHHcCCCeEEE
Confidence 9999999999999999999 899999999999886 675433 11 1111223333443331 35789999
Q ss_pred EEEeccceecChHhHHH-HHhCCCeEEcccccccC
Q 029435 160 KLSTGDSLDMSSQDETS-ITANDATIKDMEVRAEF 193 (193)
Q Consensus 160 ~i~T~d~~i~~~~~~~~-l~~~~~~~vDME~aAi~ 193 (193)
+++|+|.|+.+.+.+.+ +++++++++|||+||++
T Consensus 153 ~i~T~D~F~~~~~~~~~~~~~~g~~~vEME~aAl~ 187 (233)
T PRK13374 153 NVFSSDLFYDPDEDAIEAMERFGILGVDMEVAGLY 187 (233)
T ss_pred EEEEcCcccCCChHHHHHHHHcCCeEEehhHHHHH
Confidence 99999999998765444 45679999999999975
No 13
>PRK05819 deoD purine nucleoside phosphorylase; Reviewed
Probab=99.97 E-value=3.1e-29 Score=206.38 Aligned_cols=170 Identities=16% Similarity=0.208 Sum_probs=137.9
Q ss_pred ccccCCCceEEEEeecHHHHHHHHH-hccccccCCCCCCCCCCeEEEEEEECCEeEEEEecCCCCCCCCCCCCHHHHHHH
Q 029435 6 EKSQEAISSVVIIIAMQTEAMPLVN-KFELKEDQDSVFPEGVPWVRYHGTYKDLHLNIIWPGKDTSLEVDSVGTISASLV 84 (193)
Q Consensus 6 ~~~~~~~~~i~Ii~A~~~E~~~l~~-~l~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~~~G~~~~~~~~~iG~v~Aa~~ 84 (193)
.-+..++.+..|++.++.+++.+.+ .+++.+... +.+++.+|+|+++|++|.++.+| ||++|||++
T Consensus 6 ~~~~~~~~~~vi~~Gdp~r~~~ia~~~l~~~~~~~----~~r~~~~~~G~~~g~~v~v~~tG---------iG~~~aai~ 72 (235)
T PRK05819 6 NAKKGDIADTVLMPGDPLRAKYIAETFLEDVVCVN----EVRGMLGFTGTYKGKRVSVMGTG---------MGIPSISIY 72 (235)
T ss_pred CCCccccCCeEEecCCHHHHHHHHHHHhcCcEeee----eeccEEEEEEEECCEEEEEEecC---------CChhHHHHH
Confidence 3344567889999999999999987 567666543 46889999999999999999999 999999999
Q ss_pred HHHHHHHhCCCEEEEEeeeCccCCCCCCcccEEEecceeEecCCCCccCccccCCCCCCCCCChhhh---------cCCc
Q 029435 85 TYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVGQRQAFSTPNLL---------RELN 155 (193)
Q Consensus 85 ~~~li~~~~~~~vi~~G~aG~l~~~~~~iGDvvi~~~~~~~d~~~~~~~f~~~~~~~~p~~~~~~L~---------~~~~ 155 (193)
+++|+..++|+.||++|+|||++ +++++||+||++.+++ |.+.+ .+ .|.....|..+++.|. .+++
T Consensus 73 ~~eLi~~~~~~~iI~~GtaG~l~-~~l~iGDvVI~~~a~~-~~~~~--~~-~~~~~~~~~~~d~~l~~~~~~~~~~~~~~ 147 (235)
T PRK05819 73 ANELITDYGVKKLIRVGSCGALQ-EDVKVRDVVIAMGAST-DSNVN--RI-RFKGHDFAPIADFDLLRKAYDAAKEKGIT 147 (235)
T ss_pred HHHHHHhcCCcEEEEEecccCCC-CCCCCCCEEEEceeEe-cCCcc--cc-ccCCCCcCccCCHHHHHHHHHHHHHCCCc
Confidence 99999889999999999999999 8999999999999875 54443 11 2333334444554442 3578
Q ss_pred eeEEEEEeccceecChHh-HHHHHhCCCeEEcccccccC
Q 029435 156 LKVCKLSTGDSLDMSSQD-ETSITANDATIKDMEVRAEF 193 (193)
Q Consensus 156 ~~~G~i~T~d~~i~~~~~-~~~l~~~~~~~vDME~aAi~ 193 (193)
++.|+++|+|.|+.+.+. .+.+++++++++|||+||++
T Consensus 148 ~~~G~v~T~D~f~~~~~~~~~~~~~~g~~~vEME~aAva 186 (235)
T PRK05819 148 VHVGNVFSADLFYNPDPEMFDVLEKYGVLGVEMEAAALY 186 (235)
T ss_pred EEEEEEEecCcccCCCHHHHHHHHHcCCeEEeccHHHHH
Confidence 999999999999997664 44556689999999999975
No 14
>PRK08236 hypothetical protein; Provisional
Probab=99.96 E-value=8.7e-29 Score=200.70 Aligned_cols=148 Identities=21% Similarity=0.315 Sum_probs=119.7
Q ss_pred CceEEEEeecHHHHHHHHHhccccccCCCCCCCCCCeEEEEEEECCEeEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 029435 12 ISSVVIIIAMQTEAMPLVNKFELKEDQDSVFPEGVPWVRYHGTYKDLHLNIIWPGKDTSLEVDSVGTISASLVTYASIQA 91 (193)
Q Consensus 12 ~~~i~Ii~A~~~E~~~l~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~~~G~~~~~~~~~iG~v~Aa~~~~~li~~ 91 (193)
|++|+|++|++.|++++.+.|.. ++++.++.|| |||+|||++++.+|++
T Consensus 1 ~~~i~vv~A~~~E~~~l~~~l~~----------------------~~~~~v~~sG---------iGkv~AA~~~~~li~~ 49 (212)
T PRK08236 1 MKRVLVVTAVPAERDAVLRGLGN----------------------DSRFDVLAAG---------VGPAAAAASTARALAA 49 (212)
T ss_pred CceEEEEEecHHHHHHHHHhccC----------------------CCceEEEEcC---------cCHHHHHHHHHHHHHH
Confidence 46899999999999999876542 1258889999 9999999999999999
Q ss_pred h--CCCEEEEEeeeCccCCCCCCcccEEEecceeEecCCCCccCccccCCCCC-----CCCC-Chhhh---------cCC
Q 029435 92 L--KPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVGQR-----QAFS-TPNLL---------REL 154 (193)
Q Consensus 92 ~--~~~~vi~~G~aG~l~~~~~~iGDvvi~~~~~~~d~~~~~~~f~~~~~~~~-----p~~~-~~~L~---------~~~ 154 (193)
| +|+.|||+|+|||++ +++++||+|+++++++||.+...+. ++..... ..|+ ++.|. ..+
T Consensus 50 ~~~~p~~vI~~GvAGgl~-~~l~vGDvVva~~~~~~D~g~~~~~--g~~~~~~~~~~~~~~~~d~~l~~~~~~~l~~~~~ 126 (212)
T PRK08236 50 AAAPYDLVVSAGIAGGFP-GKAEVGSLVVADEIIAADLGAETPD--GFLPVDELGFGTTTIQVDPALVRQLTEALLAAAL 126 (212)
T ss_pred hccCCCEEEEEecccCCC-CCCCCCCEEEEeeEEeccCCCCCcc--CcCccccccCCcceecCCHHHHHHHHHHHHhcCC
Confidence 9 999999999999999 8999999999999999998764210 1111111 1122 33331 246
Q ss_pred ceeEEEEEeccceecChHhHHHHHh-C-CCeEEcccccccC
Q 029435 155 NLKVCKLSTGDSLDMSSQDETSITA-N-DATIKDMEVRAEF 193 (193)
Q Consensus 155 ~~~~G~i~T~d~~i~~~~~~~~l~~-~-~~~~vDME~aAi~ 193 (193)
+++.|+++|+|+|+.+.+.++.|++ + +++++|||+||+.
T Consensus 127 ~~~~G~i~Tgd~~v~~~~~~~~l~~~~~~a~~vdMEgaAvA 167 (212)
T PRK08236 127 GATAGPVLTVSTVTGTAETAAALAARHPDAVAEAMEGFGVA 167 (212)
T ss_pred CeEEeeEEecCeEeCCHHHHHHHHHHCCCceeehhHHHHHH
Confidence 7999999999999999999999986 6 8999999999973
No 15
>TIGR00107 deoD purine-nucleoside phosphorylase, family 1 (deoD). Purine nucleoside phosphorylase (also called inosine phosphorylase) is a purine salvage enzyme. Purine nucleosides, such as guanosine, inosine, or xanthosine, plus orthophosphate, can be converted to their respective purine bases (guanine, hypoxanthine, or xanthine) plus ribose-1-phosphate. This family of purine nucleoside phosphorylase is restricted to the bacteria.
Probab=99.96 E-value=1.4e-28 Score=202.05 Aligned_cols=166 Identities=19% Similarity=0.254 Sum_probs=134.7
Q ss_pred CCCceEEEEeecHHHHHHHHH-hccccccCCCCCCCCCCeEEEEEEECCEeEEEEecCCCCCCCCCCCCHHHHHHHHHHH
Q 029435 10 EAISSVVIIIAMQTEAMPLVN-KFELKEDQDSVFPEGVPWVRYHGTYKDLHLNIIWPGKDTSLEVDSVGTISASLVTYAS 88 (193)
Q Consensus 10 ~~~~~i~Ii~A~~~E~~~l~~-~l~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~~~G~~~~~~~~~iG~v~Aa~~~~~l 88 (193)
.+..+..|++.++.+++.+.+ .+++.+... +.+++.+|+|+|+|++|.++.+| ||+++|++++++|
T Consensus 7 ~~~~~~vi~~Gdp~r~~~ia~~~~~~~~~~~----~~r~~~~~~G~~~g~~v~v~~~G---------~G~~~aai~~~el 73 (232)
T TIGR00107 7 GDIADVVLMPGDPLRAKYIAETFLEDAKEVN----EVRGMLGFTGTYKGKKISVMGHG---------MGIPSISIYVYEL 73 (232)
T ss_pred cccCCeEEeCCCHHHHHHHHHHHhcCcEeee----eecceEEEEEEECCEEEEEEeCC---------CCHhHHHHHHHHH
Confidence 345789999999999999986 576666543 47899999999999999999999 9999999999999
Q ss_pred HHHhCCCEEEEEeeeCccCCCCCCcccEEEecceeEecCCCCccCccccCCCCCCCCCChhhh---------cCCceeEE
Q 029435 89 IQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVGQRQAFSTPNLL---------RELNLKVC 159 (193)
Q Consensus 89 i~~~~~~~vi~~G~aG~l~~~~~~iGDvvi~~~~~~~d~~~~~~~f~~~~~~~~p~~~~~~L~---------~~~~~~~G 159 (193)
+..++|+.||++|+|||++ +++++||+||++.++++|. .+ .. .|.....|..+++.|. .+++++.|
T Consensus 74 i~~~~~~~iI~~Gt~G~l~-~~~~~GdvvI~~~a~~~~~-~~--~~-~~~~~~~~~~ad~~l~~~l~~~~~~~~~~~~~G 148 (232)
T TIGR00107 74 IKFYEVKTIIRIGSCGAIR-PDVKLRDVIIAMGASTDSK-YN--RV-RFVEVDFAAIADFELVELAYQTAKALGLDFHVG 148 (232)
T ss_pred HHHcCCCEEEEEeccccCC-CCCCCCCEEEECceeccCC-cc--hh-hcCCCCcCccCCHHHHHHHHHHHHHCCCCeEEE
Confidence 9889999999999999999 8999999999999998774 22 11 1222223333454331 35789999
Q ss_pred EEEeccceecChHh-HHHHHhCCCeEEcccccccC
Q 029435 160 KLSTGDSLDMSSQD-ETSITANDATIKDMEVRAEF 193 (193)
Q Consensus 160 ~i~T~d~~i~~~~~-~~~l~~~~~~~vDME~aAi~ 193 (193)
+++|+|.|+.+..+ .+.+++++++++|||+||++
T Consensus 149 ~~~S~D~f~~~~~~~~~~~~~~g~~~vEME~aal~ 183 (232)
T TIGR00107 149 NVFSADAFYQPDKDVFDLMAKYGILAVEMEAAALY 183 (232)
T ss_pred EEeEcCcccCCCHHHHHHHHHcCCeEEehhHHHHH
Confidence 99999999987654 44566789999999999975
No 16
>PF01048 PNP_UDP_1: Phosphorylase superfamily; InterPro: IPR000845 Phosphorylases in this entry include: Purine nucleoside phosphorylase (2.4.2.1 from EC) (PNP) from most bacteria (gene deoD), which catalyses the cleavage of guanosine or inosine to respective bases and sugar-1-phosphate molecules []. Uridine phosphorylase (2.4.2.3 from EC) (UdRPase) from bacteria (gene udp) and mammals, which catalyses the cleavage of uridine into uracil and ribose-1-phosphate, the products of the reaction are used either as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis []. 5'-methylthioadenosine phosphorylase (2.4.2.28 from EC) (MTA phosphorylase) from Sulfolobus solfataricus []. Purine nucleoside phosphorylase (2.4.2.1 from EC) (PNP) from mammals as well as from some bacteria (gene deoD). This enzyme catalyzes the cleavage of guanosine or inosine to respective bases and sugar-1-phosphate molecules []. 5'-methylthioadenosine phosphorylase (2.4.2.28 from EC) (MTA phosphorylase) from eukaryotes []. ; GO: 0003824 catalytic activity, 0009116 nucleoside metabolic process; PDB: 3OZE_A 1K27_A 1CB0_A 1CG6_A 1SD1_A 3LN5_C 3OZD_B 3OZC_A 1SD2_A 1U1G_C ....
Probab=99.95 E-value=1.1e-27 Score=195.39 Aligned_cols=166 Identities=28% Similarity=0.380 Sum_probs=129.0
Q ss_pred eEEEEeecHHHHHHHHHh-ccccccCCCCCCCCCCeEEEEEEECCEeEEEEecCCCCCCCCCCCCHHHHH-HHHHHHHHH
Q 029435 14 SVVIIIAMQTEAMPLVNK-FELKEDQDSVFPEGVPWVRYHGTYKDLHLNIIWPGKDTSLEVDSVGTISAS-LVTYASIQA 91 (193)
Q Consensus 14 ~i~Ii~A~~~E~~~l~~~-l~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~~~G~~~~~~~~~iG~v~Aa-~~~~~li~~ 91 (193)
+|+||||++.|++++.+. +.+.+... ..+.+++|.|++++++++++.+| ||+++|+ .+++.++++
T Consensus 1 ~i~ii~a~~~e~~~~~~~~~~~~~~~~----~~~~~~~~~g~~~~~~v~i~~~g---------~G~~~aa~~~~~~~l~~ 67 (234)
T PF01048_consen 1 RIGIICAMPEEAEALADLPLEETPYFR----ENRGFTYYTGKYGGKNVVIVSTG---------MGPVNAAVIATQRLLEE 67 (234)
T ss_dssp EEEEEESSHHHHHHHHHHEEEEEEEEE----ECTTEEEEEEEETTEEEEEEEES---------SSHHHHHHHHHHHHHHH
T ss_pred CEEEEcCCHHHHHHHHhhcccCCCccc----cCCCcEEEEEEECCEEEEEEECC---------cCCchHHHHHHHHHHHh
Confidence 689999999999999998 33333222 24789999999999999999999 9999999 999999999
Q ss_pred hCCCEEEEEeeeCccCCCCCCcccEEEecceeEecCCCCccCcc---ccCCCCCCCCCChhhh---------cCCceeEE
Q 029435 92 LKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFD---LYGVGQRQAFSTPNLL---------RELNLKVC 159 (193)
Q Consensus 92 ~~~~~vi~~G~aG~l~~~~~~iGDvvi~~~~~~~d~~~~~~~f~---~~~~~~~p~~~~~~L~---------~~~~~~~G 159 (193)
|+|+.||++|+|||++ +++++||+|+++.++++|.......+. .+.....+..+++.|. .+.+++.|
T Consensus 68 ~~~~~vi~~G~~G~~~-~~~~~GDvvi~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G 146 (234)
T PF01048_consen 68 FGPDLVIMIGICGGLD-PDIKLGDVVIPQDAIRYDGDSPSFFFDEEPPYAPVSRPAPADPDLREALKEAAKALGIPVHEG 146 (234)
T ss_dssp CTSSEEEEEEEEEESS-TTS-TTEEEEEEEEEEESSHHGHHSSETTSGTSTSCSTEESHHHHHHHHHHHHHHTTSTEEEE
T ss_pred CCCeEEEEeccccccc-cccccceEEecccEEeccCccccccccccccccccccccccCHHHHHHHHHhhhccccccccc
Confidence 9999999999999999 899999999999999988754311110 1111111111233332 25789999
Q ss_pred EEEeccceecChHhHH-HHHhCCCeEEcccccccC
Q 029435 160 KLSTGDSLDMSSQDET-SITANDATIKDMEVRAEF 193 (193)
Q Consensus 160 ~i~T~d~~i~~~~~~~-~l~~~~~~~vDME~aAi~ 193 (193)
+++|+|.|+.+..... .+++++++++|||+||++
T Consensus 147 ~~~s~~~~~~~~~~~~~~~~~~g~~~vdME~aa~~ 181 (234)
T PF01048_consen 147 PIASGDSFYRETEAEIELLQKFGADAVDMESAAVA 181 (234)
T ss_dssp EEEEESSSSGSHHHHHHHHHHTTEEEEESSHHHHH
T ss_pred eEEEEeeeccchhhHHHHHHhcccccccchHHHHH
Confidence 9999999999885444 455679999999999873
No 17
>PRK07115 AMP nucleosidase; Provisional
Probab=99.95 E-value=1.3e-26 Score=192.86 Aligned_cols=158 Identities=17% Similarity=0.155 Sum_probs=126.7
Q ss_pred CCceEEEEeecHHHHHHHHHhccccccCCCCCCCCCCeEEEEEEECCEeEEEEecCCCCCCCCCCCCHHHHHHHHHHHHH
Q 029435 11 AISSVVIIIAMQTEAMPLVNKFELKEDQDSVFPEGVPWVRYHGTYKDLHLNIIWPGKDTSLEVDSVGTISASLVTYASIQ 90 (193)
Q Consensus 11 ~~~~i~Ii~A~~~E~~~l~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~~~G~~~~~~~~~iG~v~Aa~~~~~li~ 90 (193)
...+.+|++..+..++.+.+.++..+. . ..+.+..|+ |.+|.++.+| ||++|||+++++|+
T Consensus 22 ~~~~~vl~~gdp~r~~~ia~~~~~~~~-~----~~r~~~~~~----g~~vsv~~~G---------IG~psAai~~eeL~- 82 (258)
T PRK07115 22 EFGPYILLTNFSYYVEVFAELFGVPVS-G----SMFSMAHAT----AEGITIINFG---------MGSPNAATIMDLLS- 82 (258)
T ss_pred HcCCEEEECCChHHHHHHHHHcCCcee-c----ccceeeccC----CCEEEEEeCC---------CCHHHHHHHHHHHH-
Confidence 456789999999999999998877643 2 233333333 9999999999 99999999999776
Q ss_pred HhCCCEEEEEeeeCccCCCCCCcccEEEecceeEecCCCCccCccccCCCCCCCCCChhhh---------cCCceeEEEE
Q 029435 91 ALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVGQRQAFSTPNLL---------RELNLKVCKL 161 (193)
Q Consensus 91 ~~~~~~vi~~G~aG~l~~~~~~iGDvvi~~~~~~~d~~~~~~~f~~~~~~~~p~~~~~~L~---------~~~~~~~G~i 161 (193)
.++++.+|++|+||||+ +++++||+||+++++++|.. + + .|.++..|..|+..|. .+++++.|++
T Consensus 83 ~~g~~~iIr~GtaGaL~-~~l~~GDiVI~t~avr~dgt-s---~-~Y~p~~~pa~~d~~l~~~l~~~~~~~~~~~~~G~v 156 (258)
T PRK07115 83 ALNPKAVLFLGKCGGLK-SKYQVGDYFLPIAAIRGEGT-S---D-DYFPPEVPALPNFVLQKAVSSIIRDKGLDYWTGTV 156 (258)
T ss_pred HcCCCEEEEEecccCcC-CCCCCCCEEEEEEEEEcCCc-c---c-cccCCccCcCCCHHHHHHHHHHHHHcCCCeEEEEE
Confidence 56999999999999999 89999999999999988853 2 3 4777777777764331 3678999999
Q ss_pred Eeccceec-C-hHhHHHHHhCCCeEEcccccccC
Q 029435 162 STGDSLDM-S-SQDETSITANDATIKDMEVRAEF 193 (193)
Q Consensus 162 ~T~d~~i~-~-~~~~~~l~~~~~~~vDME~aAi~ 193 (193)
+|+|.|+. + .+..+.|++++++++|||+||+|
T Consensus 157 ~StD~ff~~~~~~~~~~~~~~g~~avEME~AAl~ 190 (258)
T PRK07115 157 YTTNRRFWEHDKEFKEYLYETRAQAIDMETATLF 190 (258)
T ss_pred EecCCCccCCcHHHHHHHHHcCCeEEehhHHHHH
Confidence 99998553 3 33455676789999999999985
No 18
>COG2820 Udp Uridine phosphorylase [Nucleotide transport and metabolism]
Probab=99.93 E-value=4.4e-25 Score=178.43 Aligned_cols=161 Identities=17% Similarity=0.214 Sum_probs=139.0
Q ss_pred ceEEEEeecHHHHHHHHHhccccccCCCCCCCCCCeEEEEEEECCEeEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHHh
Q 029435 13 SSVVIIIAMQTEAMPLVNKFELKEDQDSVFPEGVPWVRYHGTYKDLHLNIIWPGKDTSLEVDSVGTISASLVTYASIQAL 92 (193)
Q Consensus 13 ~~i~Ii~A~~~E~~~l~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~~~G~~~~~~~~~iG~v~Aa~~~~~li~~~ 92 (193)
.+.+|+...|...+.+.+.|++.+... +.+.++.|+|+|++++|.++.|| ||.++||+++++|. +.
T Consensus 17 ~~~vilpGdP~R~~~iA~lld~~~~va----~~Ref~~~~g~~~g~~v~v~StG---------IGgPSaaIAvEEL~-~l 82 (248)
T COG2820 17 ATLVILPGDPERVEKIAKLLDNPVLVA----SNREFRTYTGTYNGKPVTVCSTG---------IGGPSAAIAVEELA-RL 82 (248)
T ss_pred cceEEecCCHHHHHHHHHHhccchhhh----hccceEEEEEEEcCeEEEEEecC---------CCCchHHHHHHHHH-hc
Confidence 368999999999999999999988876 57889999999999999999999 99999999999987 67
Q ss_pred CCCEEEEEeeeCccCCCCCCcccEEEecceeEecCCCCccCccccCCCCCCCCCChhhh---------cCCceeEEEEEe
Q 029435 93 KPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVGQRQAFSTPNLL---------RELNLKVCKLST 163 (193)
Q Consensus 93 ~~~~vi~~G~aG~l~~~~~~iGDvvi~~~~~~~d~~~~~~~f~~~~~~~~p~~~~~~L~---------~~~~~~~G~i~T 163 (193)
+.+.+|.+|++||+. +++++||+||++..+..|.. + ..|....+|..|+..+. .+.+++.|++.|
T Consensus 83 Ga~tfiRVGT~Galq-~~i~~Gdvvi~tgAvr~dG~-s----~~y~~~~~PAv~d~~~t~al~~aa~~~~~~~~vG~v~S 156 (248)
T COG2820 83 GAKTFIRVGTTGALQ-PDINVGDVVVATGAVRLDGA-S----KHYAPEEFPAVADFELTNALVEAAESLGVTVHVGVVAS 156 (248)
T ss_pred CCeEEEEeecccccc-CCCCCCCEEEeccccccccc-c----ccccCCCCCCCCCHHHHHHHHHHHHhcCCceEEEEEee
Confidence 999999999999999 89999999999999998873 3 24666667776664331 357899999999
Q ss_pred cccee-----------cC-hHhHHHHHhCCCeEEcccccccC
Q 029435 164 GDSLD-----------MS-SQDETSITANDATIKDMEVRAEF 193 (193)
Q Consensus 164 ~d~~i-----------~~-~~~~~~l~~~~~~~vDME~aAi~ 193 (193)
+|+|+ .. ++..++|++.|.+++|||+|++|
T Consensus 157 ~D~FYgQ~r~~~~~~~~e~~~~~~~W~~~gv~~~EMEsAtlf 198 (248)
T COG2820 157 SDAFYGQERYYSGFVTPEFKESWEEWQDLGVLNIEMESATLF 198 (248)
T ss_pred cccccccccccccccCcchHHHHHHHHHcCchhhHHHHHHHH
Confidence 99999 33 34566777789999999999986
No 19
>PRK06026 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Validated
Probab=99.92 E-value=3.1e-25 Score=179.14 Aligned_cols=134 Identities=26% Similarity=0.390 Sum_probs=106.4
Q ss_pred ceEEEEeecHHHHHHHHHhccccccCCCCCCCCCCeEEEEEEECCEeEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHHh
Q 029435 13 SSVVIIIAMQTEAMPLVNKFELKEDQDSVFPEGVPWVRYHGTYKDLHLNIIWPGKDTSLEVDSVGTISASLVTYASIQAL 92 (193)
Q Consensus 13 ~~i~Ii~A~~~E~~~l~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~~~G~~~~~~~~~iG~v~Aa~~~~~li~~~ 92 (193)
++++|++|++.|+.++. +.+++++.|| |||||||++++.+|++|
T Consensus 11 ~~~l~~~A~~~E~~~~~---------------------------~~~v~l~~sG---------IGKVnAA~~t~~lI~~f 54 (212)
T PRK06026 11 KRVLFVMAADAEYGPHL---------------------------RARFTPLMTG---------VGPVEAAVNLTAALARL 54 (212)
T ss_pred ccEEEEEecHHHHhhcc---------------------------cCCeEEEEcC---------eeHHHHHHHHHHHHHHh
Confidence 67999999999988754 1238899999 99999999999999999
Q ss_pred C-----CCEEEEEeeeCccCCCCCCcccEEEecceeEecCCCCccCccccCCCCCCCCCChh---hhcC-CceeEEEEEe
Q 029435 93 K-----PDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVGQRQAFSTPN---LLRE-LNLKVCKLST 163 (193)
Q Consensus 93 ~-----~~~vi~~G~aG~l~~~~~~iGDvvi~~~~~~~d~~~~~~~f~~~~~~~~p~~~~~~---L~~~-~~~~~G~i~T 163 (193)
+ |+.|||+|+|||. ++++||||++++++|||.+.+ .| +|+.|+.|..+.+. +... .....|.+.|
T Consensus 55 ~~~~~~pd~IIn~GvAGg~---~l~igDvViat~~~~hD~d~~--~~-g~~~g~~p~~~~~~~~~l~~~~~~~~~~~i~t 128 (212)
T PRK06026 55 KAAGDLPDLVVSLGSAGSA---KLEQTEVYQVSSVSYRDMDAS--PL-GFEKGVTPFLDLPATVELPLRIPGIPEASLST 128 (212)
T ss_pred hccCCCCCEEEEecccCCC---CCccCCEEEEeeEEEcCCCCc--cc-CCcccccCCCCCchhHHHHHHHhhhhccccee
Confidence 9 9999999999993 589999999999999999877 56 47888888543322 2111 1234556677
Q ss_pred ccceecChHhHHHHHhCCCeEEccccccc
Q 029435 164 GDSLDMSSQDETSITANDATIKDMEVRAE 192 (193)
Q Consensus 164 ~d~~i~~~~~~~~l~~~~~~~vDME~aAi 192 (193)
+|.|+++.. .++++++++|||+||+
T Consensus 129 gg~~vsgd~----f~~~~a~~vdMEgaAv 153 (212)
T PRK06026 129 GGNIVSGAA----YDAIDADMVDMETYAV 153 (212)
T ss_pred cCEEeeCch----hhhcCCeEEechHHHH
Confidence 788776542 2456999999999997
No 20
>TIGR01719 euk_UDPppase uridine phosphorylase. This model represents a clade of mainly eucaryotic uridine phosphorylases. Genes from human and mouse have been characterized. This enzyme is a member of the PHP/UDP subfamily (pfam01048) and is closely related to the bacterial uridine (TIGR01718) and inosine (TIGR00107) phosphorylase equivalogs. In addition to the eukaryotes, a gene from Mycobacterium leprae is included in this equivalog and may have resulted from lateral gene transfer.
Probab=99.92 E-value=2.3e-24 Score=182.08 Aligned_cols=164 Identities=16% Similarity=0.094 Sum_probs=122.2
Q ss_pred eEEEEeecHHHHHHHHHhccccccCCCCCCCCCCeEEEE---EEECCEeEEEEecCCCCCCCCCCCCHHHHHHHHHHHHH
Q 029435 14 SVVIIIAMQTEAMPLVNKFELKEDQDSVFPEGVPWVRYH---GTYKDLHLNIIWPGKDTSLEVDSVGTISASLVTYASIQ 90 (193)
Q Consensus 14 ~i~Ii~A~~~E~~~l~~~l~~~~~~~~~~~~~~~~~~~~---g~~~~~~v~~~~~G~~~~~~~~~iG~v~Aa~~~~~li~ 90 (193)
+++|++..|..++.+.+.|...+...... +.+.+..|+ |+|+|.+|+++.+| ||++||++++++|+.
T Consensus 32 ~~vi~~GDP~Ra~~iA~~l~~~~~~~~~~-~~r~~~~~t~r~g~ykg~~V~v~stG---------IG~psaaI~~~ELi~ 101 (287)
T TIGR01719 32 KFVCMGGTPSRMKAFARYVGAELGLSCGR-DYPNISERGDRFAMYKVGPVLCVSHG---------MGIPSISIMLHELIK 101 (287)
T ss_pred CEEEeCCCHHHHHHHHHHHhhhhcccccc-cceeeeeeccccEEEccEEEEEEecC---------CCcchHHHHHHHHHH
Confidence 79999999999999999887755332100 233444444 89999999999999 999999999999997
Q ss_pred H---h--CCCEEEEEeeeCccCCCCCCcccEEEecceeEecCCCCccCccccCCC---CCCCCCChhhh-----------
Q 029435 91 A---L--KPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVG---QRQAFSTPNLL----------- 151 (193)
Q Consensus 91 ~---~--~~~~vi~~G~aG~l~~~~~~iGDvvi~~~~~~~d~~~~~~~f~~~~~~---~~p~~~~~~L~----------- 151 (193)
. | +++.||++|+|||+ ++++||+||++.++++|.+.. +..+..+ ..|..++++|.
T Consensus 102 ~~~~~~~~~~~IIRiGtaG~l---~i~iGDvVIat~a~~~d~~~~---~~~~~~~~~~~~~~~aD~~L~~~l~~aa~~~~ 175 (287)
T TIGR01719 102 LLYYARCKNPTFIRIGTSGGI---GVPPGTVVVSSEAVDACLKPE---YEQIVLGKRVIRPTQLDEALVQELLLCGAEGL 175 (287)
T ss_pred hhhhcCCCCceEEEEeccccC---CCCCCCEEEEchhhhcccCch---HhhcccCCCcccCCCCCHHHHHHHHHHHHhhc
Confidence 5 4 55599999999999 499999999999998886432 1112221 11333454431
Q ss_pred cCCceeEEEEEeccceecCh-------------HhHHHHH---hCCCeEEcccccccC
Q 029435 152 RELNLKVCKLSTGDSLDMSS-------------QDETSIT---ANDATIKDMEVRAEF 193 (193)
Q Consensus 152 ~~~~~~~G~i~T~d~~i~~~-------------~~~~~l~---~~~~~~vDME~aAi~ 193 (193)
.+.+++.|+++|+|.|+.+. +..+.++ +++++++|||+||+|
T Consensus 176 ~~~~~~~G~i~S~D~Fy~~q~r~~~~~~~~~~~~~~~~i~~~~~~gv~~vEMEsaal~ 233 (287)
T TIGR01719 176 DEFTTVSGNTMCTDDFYEGQGRLDGAFCEYTEKDKMAYLRKLYALGVRNIEMESSMFA 233 (287)
T ss_pred CCCCeEEEEEccCCcccCCCCcccccccccchhhhHHHHHHHHHcCCeEEehhHHHHH
Confidence 25789999999999999862 2233444 349999999999985
No 21
>TIGR01705 MTA/SAH-nuc-hyp 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase, putative. This enzyme is involved in the recycling of the components of S-adenosylmethionine after it has donated one of its two non-ribose sulfur ligands to an acceptor. In the case of 5'-methylthioadenosine this represents the first step of the methionine salvage pathway in bacteria. This enzyme is widely distributed in bacteria.
Probab=99.92 E-value=1.4e-24 Score=175.09 Aligned_cols=134 Identities=23% Similarity=0.302 Sum_probs=107.3
Q ss_pred cccCCCceEEEEeecHHHHHHHHHhccccccCCCCCCCCCCeEEEEEEECCEeEEEEecCCCCCCCCCCCCHHHHHHHHH
Q 029435 7 KSQEAISSVVIIIAMQTEAMPLVNKFELKEDQDSVFPEGVPWVRYHGTYKDLHLNIIWPGKDTSLEVDSVGTISASLVTY 86 (193)
Q Consensus 7 ~~~~~~~~i~Ii~A~~~E~~~l~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~~~G~~~~~~~~~iG~v~Aa~~~~ 86 (193)
.|+-.+++++|++|++.|..++.. ..+.++.|| |||||||++++
T Consensus 5 ~~~~~~~~~l~v~a~~~e~~~~~~---------------------------~~~~l~~sG---------IGKVNAA~~~~ 48 (212)
T TIGR01705 5 ISHIADKDVLFVMAAQAEYGPHLQ---------------------------ALFAPLMTG---------VGPVEAAIRVG 48 (212)
T ss_pred cccccCccEEEEEeeHHHhhhccc---------------------------CCeeEEEcC---------ccHHHHHHHHH
Confidence 355567889999999999776431 125678999 99999999999
Q ss_pred HHHHHh-----CCCEEEEEeeeCccCCCCCCcccEEEecceeEecCCCCccCccccCCCCCCCCC---Chhhh-------
Q 029435 87 ASIQAL-----KPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVGQRQAFS---TPNLL------- 151 (193)
Q Consensus 87 ~li~~~-----~~~~vi~~G~aG~l~~~~~~iGDvvi~~~~~~~d~~~~~~~f~~~~~~~~p~~~---~~~L~------- 151 (193)
.||++| +|+.|||+|+|||++ +++||||++++++|||.+.+ .| +|+.|+.|..+ +..|.
T Consensus 49 ~lI~~f~~~~~~pd~VIN~GvAG~~~---~~igDIVi~t~~~~hDvd~t--~~-gy~~GqiP~~~~~~~~~l~~~~~~~~ 122 (212)
T TIGR01705 49 AELAGLDAADALPDLVVSLGSAGSRT---LEQTEIYQAVSVSYRDIDAS--AF-GFEKGATPFLDLPAEAALPFRIPDIA 122 (212)
T ss_pred HHHHhhhhccCCCCEEEEecccCCCC---CccCCEEEEeeEEEcCcCcc--cc-CCccccCCCCCCCchhhHHHHHHHHH
Confidence 999986 899999999999965 67999999999999999877 67 58889988643 22221
Q ss_pred cCCceeEEEEEeccceecChHhHHHHHhCCCeEEccccccc
Q 029435 152 RELNLKVCKLSTGDSLDMSSQDETSITANDATIKDMEVRAE 192 (193)
Q Consensus 152 ~~~~~~~G~i~T~d~~i~~~~~~~~l~~~~~~~vDME~aAi 192 (193)
.....+.|.++|+|.| .+++++++|||++|+
T Consensus 123 ~~~~~~~g~~vSgd~f----------~~~~a~~vdME~aAi 153 (212)
T TIGR01705 123 EARLSTGGAIISGAAY----------DAIAADMVDMETFAC 153 (212)
T ss_pred hccCcceeEEEECcch----------hhCCceEEechHHHH
Confidence 1222568888888886 235999999999997
No 22
>TIGR01721 AMN-like AMP nucleosidase, putative. The sequences in the clade represented by this model are most closely related to the AMP nucleosidase found in TIGR01717. These sequences are found only in Chlamydia and Porphyromonas and differ sufficiently from the characterized AMP nucleosidase to put some doubt on assignment of this name.
Probab=99.90 E-value=4.5e-23 Score=171.85 Aligned_cols=160 Identities=13% Similarity=0.082 Sum_probs=124.3
Q ss_pred CCCceEEEEeecHHHHHHHHHhcccccc-CCCCCCCCCCeEEEEEEECCEeEEEEecCCCCCCCCCCCCHHHHHHHHHHH
Q 029435 10 EAISSVVIIIAMQTEAMPLVNKFELKED-QDSVFPEGVPWVRYHGTYKDLHLNIIWPGKDTSLEVDSVGTISASLVTYAS 88 (193)
Q Consensus 10 ~~~~~i~Ii~A~~~E~~~l~~~l~~~~~-~~~~~~~~~~~~~~~g~~~~~~v~~~~~G~~~~~~~~~iG~v~Aa~~~~~l 88 (193)
+....+...+-....++.+.++++.+.. -.. . ... +. .+.+|.++.+| ||+++||+++++|
T Consensus 20 ~~~~~~~~~tn~~~~i~~f~~~~~~~v~~g~~-~----~~~---~~-~~~~itv~~~G---------vG~psAai~~eeL 81 (266)
T TIGR01721 20 IDFEPYLLLTNFSYYLHVFAEHYGVPVVEGSM-F----SAA---HA-PAEGTSIIDFK---------LGSPGAALIXDLC 81 (266)
T ss_pred ccccceeeeccHHHHHHHHHHHcCCeEeecee-c----ccc---CC-CCCCEEEEECC---------CCHHHHHHHHHHH
Confidence 3445677788888888888887766554 110 0 000 11 18899999999 9999999999988
Q ss_pred HHHhCCCEEEEEeeeCccCCCCCCcccEEEecceeEecCCCCccCccccCCCCCCCCCChhhh---------cCCceeEE
Q 029435 89 IQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVGQRQAFSTPNLL---------RELNLKVC 159 (193)
Q Consensus 89 i~~~~~~~vi~~G~aG~l~~~~~~iGDvvi~~~~~~~d~~~~~~~f~~~~~~~~p~~~~~~L~---------~~~~~~~G 159 (193)
+..++++.+|++|+||||+ +++++||+||+++++++|.. + + .|.++..|..|+..|. .+.+++.|
T Consensus 82 ~~~~G~k~iIriGtcG~L~-~~i~iGDiVI~~aAir~dgt-s---~-~Y~p~~~p~~~d~~l~~~l~~a~~~~g~~~~~G 155 (266)
T TIGR01721 82 SFLPHPKAAIMLGMCGGLR-SHYQVGDYFVPVASIRGEGT-S---D-AYFPPEVPALANFVVQKAITSALENKGKDYHIG 155 (266)
T ss_pred HHhcCCCEEEEEEeccCCC-CCCCCCCEEEEcceEeccCc-h---h-hcCCcccCCCCCHHHHHHHHHHHHHcCCCeEEE
Confidence 7788999999999999999 89999999999999988864 3 2 4767777777765442 36789999
Q ss_pred EEEeccc-eecCh-HhHHHHHhCCCeEEcccccccC
Q 029435 160 KLSTGDS-LDMSS-QDETSITANDATIKDMEVRAEF 193 (193)
Q Consensus 160 ~i~T~d~-~i~~~-~~~~~l~~~~~~~vDME~aAi~ 193 (193)
+++|+|. |.... +.++.|++.+++++|||+||+|
T Consensus 156 ~v~TtD~~F~e~~~~~~~~~~~~ga~aVEMEsAAL~ 191 (266)
T TIGR01721 156 ITHTTNIRFWEFNKKFRDKLYETKAQGVEMECATLF 191 (266)
T ss_pred EEEcCCCcEeCCcHHHHHHHHHcCCEEEehhHHHHH
Confidence 9999997 66533 3455677789999999999985
No 23
>COG0813 DeoD Purine-nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=99.90 E-value=2e-23 Score=166.73 Aligned_cols=173 Identities=19% Similarity=0.230 Sum_probs=138.1
Q ss_pred CCCccccCCCceEEEEeecHHHHHHHHHhc-cccccCCCCCCCCCCeEEEEEEECCEeEEEEecCCCCCCCCCCCCHHHH
Q 029435 3 PCGEKSQEAISSVVIIIAMQTEAMPLVNKF-ELKEDQDSVFPEGVPWVRYHGTYKDLHLNIIWPGKDTSLEVDSVGTISA 81 (193)
Q Consensus 3 ~~~~~~~~~~~~i~Ii~A~~~E~~~l~~~l-~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~~~G~~~~~~~~~iG~v~A 81 (193)
|=-.....++.+..++..+|..++.+.+.| ++.+... +.++..-|+|+|+|++|.+.-+| ||.++.
T Consensus 4 ~Hi~ak~gdia~~VLmPGDPlRAK~iAetfLe~~~~vn----evR~mlgfTGtYKGk~iSvmg~G---------mGipS~ 70 (236)
T COG0813 4 PHINAKKGDIAEVVLMPGDPLRAKYIAETFLENAVCVN----EVRGMLGFTGTYKGKKISVMGHG---------MGIPSI 70 (236)
T ss_pred cccCCCcCccCceeecCCCCchHHHHHHHHHhhhhhhh----hhcchhcccceecCcEEEEEEec---------CCCccH
Confidence 333445566788999999999999988764 4444443 46788889999999999999999 999999
Q ss_pred HHHHHHHHHHhCCCEEEEEeeeCccCCCCCCcccEEEecceeEecCCCCccCccccCCCCCCCCCChhhh---------c
Q 029435 82 SLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVGQRQAFSTPNLL---------R 152 (193)
Q Consensus 82 a~~~~~li~~~~~~~vi~~G~aG~l~~~~~~iGDvvi~~~~~~~d~~~~~~~f~~~~~~~~p~~~~~~L~---------~ 152 (193)
++.+.+|+..|+++.+|++|+||+++ ++++++|+||++..+ .|.....-.|.+ ...+..+|.+|+ .
T Consensus 71 sIY~~ELi~~y~Vk~iIRvGt~Gal~-~~v~l~DvVia~~A~-tds~~~~~~f~~---~df~~~ad~~Ll~~a~~~A~e~ 145 (236)
T COG0813 71 SIYSRELITDYGVKKIIRVGTCGALS-EDVKLRDVVIAQGAS-TDSNVNRIRFKP---HDFAPIADFELLEKAYETAKEL 145 (236)
T ss_pred HHHHHHHHHHhCcceEEEEEcccccc-CCcccceEEEecccc-CcchhhhcccCc---ccccccCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999 899999999999886 454332112322 222334554442 4
Q ss_pred CCceeEEEEEeccceecC-hHhHHHHHhCCCeEEcccccccC
Q 029435 153 ELNLKVCKLSTGDSLDMS-SQDETSITANDATIKDMEVRAEF 193 (193)
Q Consensus 153 ~~~~~~G~i~T~d~~i~~-~~~~~~l~~~~~~~vDME~aAi~ 193 (193)
++++|.|++.|+|.|+.+ ++..+.|++.|+++||||+||+|
T Consensus 146 gi~~hvgnv~ssD~FY~~~~~~~~~~~~~gvlaVeMEaaalY 187 (236)
T COG0813 146 GIDTHVGNVFSSDLFYNPDTEMFDLMAKYGVLAVEMEAAALY 187 (236)
T ss_pred CCceeeeeeeeeecccCCCHHHHHHHHHhCCcEEEeeHHHHH
Confidence 789999999999999976 55666778889999999999975
No 24
>PRK05634 nucleosidase; Provisional
Probab=99.89 E-value=9.2e-23 Score=162.31 Aligned_cols=131 Identities=25% Similarity=0.350 Sum_probs=100.9
Q ss_pred CceEEEEeecHHHHHHHHHhccccccCCCCCCCCCCeEEEEEEECCEeEEEEecCCCCCCCCCCCCHHHHHHHHHHHHH-
Q 029435 12 ISSVVIIIAMQTEAMPLVNKFELKEDQDSVFPEGVPWVRYHGTYKDLHLNIIWPGKDTSLEVDSVGTISASLVTYASIQ- 90 (193)
Q Consensus 12 ~~~i~Ii~A~~~E~~~l~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~~~G~~~~~~~~~iG~v~Aa~~~~~li~- 90 (193)
.++++|++|++.|...+.+ .+.++.|| |||+|||++++++|.
T Consensus 3 ~~~~l~v~a~~~E~~~~~~----------------------------~~~~~~sG---------IGkvnaA~~~~~~L~~ 45 (185)
T PRK05634 3 MTRVLVVSATKEEAVYVPA----------------------------GLPLLITG---------IGKVAAAVALTRALAR 45 (185)
T ss_pred cccEEEEEecHHHHhhccC----------------------------CCEEEEcC---------CCHHHHHHHHHHHHHh
Confidence 4679999999999865310 26677899 999999999888775
Q ss_pred -HhCCCEEEEEeeeCccCCCCCCcccEEEecceeEecCCCCccCcc---ccCCCCCCCCCChhhhcCCceeEEEEEeccc
Q 029435 91 -ALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFD---LYGVGQRQAFSTPNLLRELNLKVCKLSTGDS 166 (193)
Q Consensus 91 -~~~~~~vi~~G~aG~l~~~~~~iGDvvi~~~~~~~d~~~~~~~f~---~~~~~~~p~~~~~~L~~~~~~~~G~i~T~d~ 166 (193)
+|+|+.|||+|+|||++ ++++ |+++++++++||.+.+ .+. ++..++.+.++ ....|.+.|||.
T Consensus 46 ~~~~p~~iIn~G~AG~l~-~~l~--~vv~~~~v~~~D~~~~--~~~~~~~~~~~~~~~~~--------~~~~g~i~sgD~ 112 (185)
T PRK05634 46 RGVLPPRVVNIGTAGALR-DGLS--GVFEPSHVINHDFSSD--LIRALTGHPVANRLELP--------TGDGAVLATGDA 112 (185)
T ss_pred cCCCCCEEEEeecccCCC-cCCC--eEEEEeeEEEcccCcc--ccccccCcccccccccc--------cCCCceEecCCc
Confidence 59999999999999999 7765 8999999999998755 221 11111111111 123589999999
Q ss_pred eecChHhHHHHHhCCCeEEcccccccC
Q 029435 167 LDMSSQDETSITANDATIKDMEVRAEF 193 (193)
Q Consensus 167 ~i~~~~~~~~l~~~~~~~vDME~aAi~ 193 (193)
|+.+++.++++++ +++++|||+||++
T Consensus 113 fvs~~~~~~~l~~-~a~~vDME~aAva 138 (185)
T PRK05634 113 FISDTATRDRLAQ-RADLVDMEGYAVA 138 (185)
T ss_pred eecCHHHHHHHhc-cCeEEecHHHHHH
Confidence 9999887777875 7899999999974
No 25
>PRK08292 AMP nucleosidase; Provisional
Probab=99.88 E-value=3.4e-22 Score=176.88 Aligned_cols=132 Identities=18% Similarity=0.170 Sum_probs=100.2
Q ss_pred CCeEEEEEE-ECCEeEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeeeCccCCCCCCcccEEEecceeE
Q 029435 46 VPWVRYHGT-YKDLHLNIIWPGKDTSLEVDSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAF 124 (193)
Q Consensus 46 ~~~~~~~g~-~~~~~v~~~~~G~~~~~~~~~iG~v~Aa~~~~~li~~~~~~~vi~~G~aG~l~~~~~~iGDvvi~~~~~~ 124 (193)
...++|.+. .+|++|+++.+| |||+||+++++.| ..++|+.+|++|+||||+ +++++||+||++.+++
T Consensus 263 ~~mp~y~l~~~~G~~VtvvssG---------IGpsnAA~ateeL-a~lgpd~iIriGtAGgL~-~~lkiGDvVIA~aavr 331 (489)
T PRK08292 263 PQMPAYHLIRADGQGITLVNIG---------VGPSNAKTITDHL-AVLRPHAWLMIGHCGGLR-NSQRIGDYVLAHAYLR 331 (489)
T ss_pred cCCcceEeeccCCceEEEEEcC---------CCHHHHHHHHHHH-HHcCCCEEEEEEehhcCC-CCCCCCCEEEECceEe
Confidence 446666655 567999999999 9999999999875 568999999999999999 8999999999999999
Q ss_pred ecCCCCccCccccCCCCCCCCCCh----hhh-------------cCCceeEEEEEeccceecCh---HhHHHHHhCCCeE
Q 029435 125 HDRRIPIPVFDLYGVGQRQAFSTP----NLL-------------RELNLKVCKLSTGDSLDMSS---QDETSITANDATI 184 (193)
Q Consensus 125 ~d~~~~~~~f~~~~~~~~p~~~~~----~L~-------------~~~~~~~G~i~T~d~~i~~~---~~~~~l~~~~~~~ 184 (193)
+|.... .|..+..|..++. .|. .+.+++.|+++|+|.|+... +.++.+++.++++
T Consensus 332 ~DGt~d-----~~~p~evPa~a~~el~~aL~~aa~ev~~~~g~elg~~~h~G~V~SgD~F~~e~~~~~l~~~~~~~gAlA 406 (489)
T PRK08292 332 DDHVLD-----AVLPPWIPIPAIAEVQVALEDAVAEVTGLPGEELKRRMRTGTVVTTDDRNWELRYSASALRFNQSRAVA 406 (489)
T ss_pred CCcccc-----cccccccCcCCcHHHHHHHHHHHHHHhhhcccccCCceEEEEEEecCcCCCcCchHHHHHHhhhcCCEE
Confidence 996322 1333444432221 111 14679999999999997543 2234444459999
Q ss_pred EcccccccC
Q 029435 185 KDMEVRAEF 193 (193)
Q Consensus 185 vDME~aAi~ 193 (193)
+|||+|||+
T Consensus 407 VEMESAALa 415 (489)
T PRK08292 407 LDMESATIA 415 (489)
T ss_pred EehhHHHHH
Confidence 999999985
No 26
>PRK08666 5'-methylthioadenosine phosphorylase; Validated
Probab=99.88 E-value=7e-22 Score=165.01 Aligned_cols=161 Identities=15% Similarity=0.185 Sum_probs=121.7
Q ss_pred CceEEEEeecHHHHHHHHHhc-cccccCCCCCCCCCCeEEEEEEECCEeEE-EEecCCCCCCCCCCCC------HHHHHH
Q 029435 12 ISSVVIIIAMQTEAMPLVNKF-ELKEDQDSVFPEGVPWVRYHGTYKDLHLN-IIWPGKDTSLEVDSVG------TISASL 83 (193)
Q Consensus 12 ~~~i~Ii~A~~~E~~~l~~~l-~~~~~~~~~~~~~~~~~~~~g~~~~~~v~-~~~~G~~~~~~~~~iG------~v~Aa~ 83 (193)
|++|+||.++..|...+.+.+ ...... ..+...|+.|+++|++|+ +.++| +| ++|+++
T Consensus 1 ~~~igII~gsgl~~~~l~~~~~~~~~~~-----~~g~~~~~~G~~~g~~Vv~l~~~G---------~gh~~~~~kVn~~a 66 (261)
T PRK08666 1 MVRIAIIGGSGVYDPKILENIREETVET-----PYGEVKVKIGTYAGEEVAFLARHG---------EGHSVPPHKINYRA 66 (261)
T ss_pred CCcEEEEecCCCCccchhhhcccceeEe-----eCCCCEEEEEEECCEEEEEEeCCC---------CCCccChhhcchHH
Confidence 468999999999987787777 333322 245679999999999998 67799 99 999887
Q ss_pred HHHHHHHHhCCCEEEEEeeeCccCCCCCCcccEEEecceeEecCCCCccCccccCCCCCCC------CC-Chhhh-----
Q 029435 84 VTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVGQRQA------FS-TPNLL----- 151 (193)
Q Consensus 84 ~~~~li~~~~~~~vi~~G~aG~l~~~~~~iGDvvi~~~~~~~d~~~~~~~f~~~~~~~~p~------~~-~~~L~----- 151 (193)
+++. +.+++++.||++|+|||++ +++++||+||+++.+++|.+.+. .| |..++.+. ++ |+.|.
T Consensus 67 ~~~~-l~~~Gv~~II~tgsaGsl~-~~l~~GDiVi~~d~i~~~~~~~~-~~--~~~~~~~~~~~~~~~~~d~~L~~~~~~ 141 (261)
T PRK08666 67 NIWA-LKELGVERILATSAVGSLN-PNMKPGDFVILDQFLDFTKNRHY-TF--YDGGESGVVHVDFTDPYCPELRKALIT 141 (261)
T ss_pred HHHH-HHHCCCCEEEEeccccccC-CCCCCCCEEeehhhhhcCCCCCc-cc--cCCCCCCcCCCCCCcccCHHHHHHHHH
Confidence 7777 8899999999999999999 89999999999999999975321 12 22222221 11 34442
Q ss_pred ----cCCceeEEEE---EeccceecChHhHHHHHhCCCeEEccccccc
Q 029435 152 ----RELNLKVCKL---STGDSLDMSSQDETSITANDATIKDMEVRAE 192 (193)
Q Consensus 152 ----~~~~~~~G~i---~T~d~~i~~~~~~~~l~~~~~~~vDME~aAi 192 (193)
.+++++.|.+ .+||+|....+ .+.++++|+++||||++++
T Consensus 142 ~a~~~g~~~~~ggvy~~~~Gp~fet~ae-~~~~~~~gad~V~Me~~~e 188 (261)
T PRK08666 142 AARELGLTYHPGGTYVCTEGPRFETAAE-IRMFRILGGDLVGMTQVPE 188 (261)
T ss_pred HHHHCCCceEeccEEEEeeCCCcCCHHH-HHHHHHcCCCEEccchHHH
Confidence 2567887644 67899965544 4567778999999999875
No 27
>TIGR01717 AMP-nucleosdse AMP nucleosidase. This model represents the AMP nucleosidase from proteobacteria but also including a sequence from Corynebacterium, a gram-positive organism. The species from E. coli has been most well studied.
Probab=99.87 E-value=1e-21 Score=173.41 Aligned_cols=132 Identities=20% Similarity=0.190 Sum_probs=99.9
Q ss_pred CCeEEEE-EEECCEeEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeeeCccCCCCCCcccEEEecceeE
Q 029435 46 VPWVRYH-GTYKDLHLNIIWPGKDTSLEVDSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAF 124 (193)
Q Consensus 46 ~~~~~~~-g~~~~~~v~~~~~G~~~~~~~~~iG~v~Aa~~~~~li~~~~~~~vi~~G~aG~l~~~~~~iGDvvi~~~~~~ 124 (193)
...++|. ...++.+|+++.+| ||++||+.++++| ..++|+.+|++|+||||+ +++++||+||++.+++
T Consensus 251 ~~mp~Y~l~~~~g~~ItvvstG---------IGpsnAaaiteeL-a~lgp~~iI~iGscGgL~-~~ikiGDlVIataAvR 319 (477)
T TIGR01717 251 HQMPAYHLITADGDGITLVNIG---------VGPSNAKTITDHL-AVLRPHAWLMIGHCGGLR-ESQRIGDYVLAHAYLR 319 (477)
T ss_pred CCCceEEEEeeCCceEEEEECC---------CCHHHHHHHHHHH-HHcCCCEEEEEEccccCC-CCCCCCCEEEEeeEEe
Confidence 3455565 66788999999999 9999999988775 579999999999999999 8999999999999999
Q ss_pred ecCCCCccCccccCCCCCCCCCChh----hh-------------cCCceeEEEEEecccee---cChHhHHHHHhCCCeE
Q 029435 125 HDRRIPIPVFDLYGVGQRQAFSTPN----LL-------------RELNLKVCKLSTGDSLD---MSSQDETSITANDATI 184 (193)
Q Consensus 125 ~d~~~~~~~f~~~~~~~~p~~~~~~----L~-------------~~~~~~~G~i~T~d~~i---~~~~~~~~l~~~~~~~ 184 (193)
+|.... .|.....|.-++.. |. .+.+++.|+++|+|.|+ .+.+..+.|+..++++
T Consensus 320 ~DGtsd-----~ylp~~~Papa~~~l~~aL~~Aa~~~~g~~g~el~~~~h~G~V~StD~F~~el~~~~~~~~l~~~gAlA 394 (477)
T TIGR01717 320 EDHVLD-----AVLPPDIPIPAIAEVQRALEDAVAEVTGRPGEELKRRLRTGTVLTTDDRNWELRYSASALRLNLSRAIA 394 (477)
T ss_pred cCcchh-----hhcccccCCCCcHHHHHHHHHHHHHhhcccccccCCceEEEEEEecCcCcccCCCHHHHHHHHhCCCEE
Confidence 996322 12222233222211 11 12469999999999875 3445555665559999
Q ss_pred EcccccccC
Q 029435 185 KDMEVRAEF 193 (193)
Q Consensus 185 vDME~aAi~ 193 (193)
+|||+||++
T Consensus 395 VEMESAALa 403 (477)
T TIGR01717 395 VDMESATIA 403 (477)
T ss_pred EehhHHHHH
Confidence 999999985
No 28
>TIGR01697 PNPH-PUNA-XAPA inosine guanosine and xanthosine phosphorylase family. Sequences from Clostridium and Thermotoga fall between these last two clades and are uncharacterized with respect to substrate range and operon.
Probab=99.85 E-value=1.4e-20 Score=156.14 Aligned_cols=135 Identities=14% Similarity=0.063 Sum_probs=103.9
Q ss_pred eEEEEEEECCEeEEEEecCCCCCCCCCCC----CHHHHHHHHH-HHHHHhCCCEEEEEeeeCccCCCCCCcccEEEecce
Q 029435 48 WVRYHGTYKDLHLNIIWPGKDTSLEVDSV----GTISASLVTY-ASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDV 122 (193)
Q Consensus 48 ~~~~~g~~~~~~v~~~~~G~~~~~~~~~i----G~v~Aa~~~~-~li~~~~~~~vi~~G~aG~l~~~~~~iGDvvi~~~~ 122 (193)
-.||.|+++|++|+++.+| + ||+++++++. +++.+|+++.||++|+|||++ +++++||+||++++
T Consensus 41 ~~~~~G~~~g~~Vv~~~~g---------ih~~~Gk~~~a~~~~~~~l~~~Gv~~II~~GsaGsl~-~~l~~GDiVI~~~~ 110 (248)
T TIGR01697 41 GELVFGRLGGKPVVCMQGR---------FHYYEGYDMATVTFPVRVMKLLGVEILVVTNAAGGLN-PDFKPGDLMIIKDH 110 (248)
T ss_pred ccEEEEEECCEEEEEEcCC---------CcccCCCCHHHHHHHHHHHHHcCCCEEEEecccccCC-CCCCCCCEEEEhhh
Confidence 4699999999999999999 9 9999998884 599999999999999999999 89999999999999
Q ss_pred eEecCCCCccCccc-cCCCCCCC---CCChhhh---------cCCceeEEE--EEeccceecChHhHHHHHhCCCeEEcc
Q 029435 123 AFHDRRIPIPVFDL-YGVGQRQA---FSTPNLL---------RELNLKVCK--LSTGDSLDMSSQDETSITANDATIKDM 187 (193)
Q Consensus 123 ~~~d~~~~~~~f~~-~~~~~~p~---~~~~~L~---------~~~~~~~G~--i~T~d~~i~~~~~~~~l~~~~~~~vDM 187 (193)
+++|.+.....+.. +.....|. ..|+.|. .+++++.|+ +.|||+|....+ .+.+++++++++||
T Consensus 111 i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~L~~~l~~~a~~~~~~~~~G~~~~~~G~~f~t~~e-~~~~~~~g~~~VeM 189 (248)
T TIGR01697 111 INLPGLNPLVGPNDDRFGTRFPDLSNAYDRELRKLAQDVAKELGFPLTEGVYVMVSGPSYETPAE-IRMLRILGADAVGM 189 (248)
T ss_pred hhcCCCCCccCCCcccCCceeCCCCcccCHHHHHHHHHHHHHcCCceeeEEEEEEECCCcCCHHH-HHHHHHcCCeEEcc
Confidence 99997532100000 00011222 1244442 256789999 788999995544 46677789999999
Q ss_pred cccccC
Q 029435 188 EVRAEF 193 (193)
Q Consensus 188 E~aAi~ 193 (193)
|+++++
T Consensus 190 E~aa~a 195 (248)
T TIGR01697 190 STVPEV 195 (248)
T ss_pred ChHHHH
Confidence 999864
No 29
>TIGR01700 PNPH purine nucleoside phosphorylase I, inosine and guanosine-specific. Several metazoan enzymes (PNPH) are well characterized including the human and bovine enzymes which have been crystallized.
Probab=99.83 E-value=6.6e-20 Score=152.15 Aligned_cols=134 Identities=15% Similarity=0.087 Sum_probs=103.8
Q ss_pred eEEEEEEECCEeEEEEecCCCCCCCCCCC----CHHHHHHHH-HHHHHHhCCCEEEEEeeeCccCCCCCCcccEEEecce
Q 029435 48 WVRYHGTYKDLHLNIIWPGKDTSLEVDSV----GTISASLVT-YASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDV 122 (193)
Q Consensus 48 ~~~~~g~~~~~~v~~~~~G~~~~~~~~~i----G~v~Aa~~~-~~li~~~~~~~vi~~G~aG~l~~~~~~iGDvvi~~~~ 122 (193)
-.++.|+++|++|+++.+| + |+++++++. ..|+++|+++.||++|+|||++ +++++||+||+++.
T Consensus 41 ~~~~~G~i~g~~Vv~~~~~---------iH~~~Gk~~a~i~~~~~ll~~~gv~~II~~gsaGsl~-~~l~~GDiVi~~d~ 110 (249)
T TIGR01700 41 GNLVFGILGGKPVVAMQGR---------FHMYEGYDMAKVTFPVRVMKLLGVETLVVTNAAGGIN-PEFKVGDLMLIRDH 110 (249)
T ss_pred ccEEEEEECCEEEEEEcCC---------ccccCCcCHHHccHHHHHHHHcCCCEEEEecccccCC-CCCCCCCEEEEhhH
Confidence 4699999999999999999 8 999999995 9999999999999999999999 89999999999999
Q ss_pred eEecCCCCccCccccCC-CCCCC---CCChhhh---------cCCceeEEE--EEeccceecChHhHHHHHhCCCeEEcc
Q 029435 123 AFHDRRIPIPVFDLYGV-GQRQA---FSTPNLL---------RELNLKVCK--LSTGDSLDMSSQDETSITANDATIKDM 187 (193)
Q Consensus 123 ~~~d~~~~~~~f~~~~~-~~~p~---~~~~~L~---------~~~~~~~G~--i~T~d~~i~~~~~~~~l~~~~~~~vDM 187 (193)
+++|.+.+...++.-.. .+.|. ..|+.|. .+++++.|+ +.|||+|....+ .+.++++|++++||
T Consensus 111 i~~~~~~~l~g~~~~~~~~~~~~~~~~~d~~L~~~~~~~a~~~~~~~~~G~y~~~sGp~F~t~aE-~~~~~~~gad~V~M 189 (249)
T TIGR01700 111 INLPGFNPLRGPNEERFGVRFPDMSDAYDRDLRQKAHSIAKQLNIPLQEGVYVMLGGPSYETPAE-VRLLRTLGADAVGM 189 (249)
T ss_pred hhCCCCCCccCCCCcCCCCeeCCCCcccCHHHHHHHHHHHHHcCCccceEEEEEeeCCCcCCHHH-HHHHHHcCCCEEec
Confidence 99996322100100000 11121 1244442 256789999 899999995554 45666689999999
Q ss_pred ccccc
Q 029435 188 EVRAE 192 (193)
Q Consensus 188 E~aAi 192 (193)
|++++
T Consensus 190 e~aae 194 (249)
T TIGR01700 190 STVPE 194 (249)
T ss_pred chHHH
Confidence 99986
No 30
>TIGR03468 HpnG hopanoid-associated phosphorylase. The sequences in this family are members of the pfam01048 family of phosphorylases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. This gene is adjacent to the genes PhnA-E and squalene-hopene cyclase (which would be HpnF) in Zymomonas mobilis and their association with hopene biosynthesis has been noted in the literature. Extending the gene symbol sequence, we suggest the symbol HpnG for the product of this gene. Hopanoids are known to be components of the plasma membrane and to have polar sugar head groups in Z. mobilis and other species.
Probab=99.83 E-value=2.9e-20 Score=150.86 Aligned_cols=132 Identities=19% Similarity=0.214 Sum_probs=102.6
Q ss_pred eEEEEeecHHHHHHHHHhccccccCCCCCCCCCCeEEEEEEECCEeEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHHhC
Q 029435 14 SVVIIIAMQTEAMPLVNKFELKEDQDSVFPEGVPWVRYHGTYKDLHLNIIWPGKDTSLEVDSVGTISASLVTYASIQALK 93 (193)
Q Consensus 14 ~i~Ii~A~~~E~~~l~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~~~G~~~~~~~~~iG~v~Aa~~~~~li~~~~ 93 (193)
.++++++++.|.... .+++|.++.+| ||++||+.+++.|+ +++
T Consensus 3 ~~~~~~~~~~e~~~~---------------------------~~~~v~~~~sG---------iG~~~aa~~~~~l~-~~~ 45 (212)
T TIGR03468 3 PILAVTGLAFEARIA---------------------------AGPGLLVCLSG---------GGPERARAAAARLM-AAG 45 (212)
T ss_pred cEEEEecchhhhhhc---------------------------CCCCEEEEEcC---------CCHHHHHHHHHHHH-HcC
Confidence 488999998886621 02348899999 99999999999985 899
Q ss_pred CCEEEEEeeeCccCCCCCCcccEEEecceeEecCCCCccCccccCCCCCCCCCC---hhhhcCCceeEEEEEeccceecC
Q 029435 94 PDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVGQRQAFST---PNLLRELNLKVCKLSTGDSLDMS 170 (193)
Q Consensus 94 ~~~vi~~G~aG~l~~~~~~iGDvvi~~~~~~~d~~~~~~~f~~~~~~~~p~~~~---~~L~~~~~~~~G~i~T~d~~i~~ 170 (193)
|+.||++|+|||++ +++++||+|+++++.+++. . |. +. +.+.. +.+..+++++.|+++|+|.|+.+
T Consensus 46 ~~~vI~~G~aG~l~-~~l~~Gdvvi~~~~~~~g~--~---~~-~d----~~l~~~l~~~l~~~~~~~~G~~~t~d~~~~~ 114 (212)
T TIGR03468 46 AAGLVSFGTAGALD-PALQPGDLVVPEEVRADGD--R---FP-TD----PAWRRRLLEALPAGLRVHRGVLAASDTVVST 114 (212)
T ss_pred CCEEEEEEecccCC-CCCCCCCEEeehhheeCCC--e---ec-CC----HHHHHHHHHHHHhCCCeEEEEEEEeCeEecC
Confidence 99999999999999 8999999999999876432 1 20 10 10100 11223567899999999999998
Q ss_pred hHhHHHHHh-CCCeEEcccccccC
Q 029435 171 SQDETSITA-NDATIKDMEVRAEF 193 (193)
Q Consensus 171 ~~~~~~l~~-~~~~~vDME~aAi~ 193 (193)
.+++..+.+ ++++++|||++|++
T Consensus 115 ~~~~~~l~~~~ga~aVdMEsaava 138 (212)
T TIGR03468 115 AAAKAALARATGAAAVDMESGAVA 138 (212)
T ss_pred HHHHHHHHHhcCCcEEeChHHHHH
Confidence 887777865 69999999999863
No 31
>TIGR01694 MTAP 5'-deoxy-5'-methylthioadenosine phosphorylase. In between the trusted and noise cutoffs are: 1) several archaeal sequences which appear to contain several residues characteristic of phosphorylases which act on guanosine or inosine (according to the crystal structure of MTAP and alignments). In any case, these residues are not conserved. 2) sequences from Mycobacterium tuberculosis and Streptomyces coelicolor which have better, although not perfect retention of the active site residues, but considering the general observation that bacteria utilize the MTA/SAH nucleotidase enzyme and a kinase to do this reaction, these have been excluded pending stronger evidence of their function, and 3) a sequence from Drosophila which appears to be a recent divergence (long branch in neighbor-joining trees) and lacks some of the conserved active site residues.
Probab=99.82 E-value=5e-20 Score=152.18 Aligned_cols=134 Identities=15% Similarity=0.118 Sum_probs=101.3
Q ss_pred eEEEEEEECCEeEEE-EecCCCCCCCCCCCCH------HHHHHHHHHHHHHhCCCEEEEEeeeCccCCCCCCcccEEEec
Q 029435 48 WVRYHGTYKDLHLNI-IWPGKDTSLEVDSVGT------ISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLIS 120 (193)
Q Consensus 48 ~~~~~g~~~~~~v~~-~~~G~~~~~~~~~iG~------v~Aa~~~~~li~~~~~~~vi~~G~aG~l~~~~~~iGDvvi~~ 120 (193)
.++|.|+++|++|++ ..+| +|+ +|+++.++.| .+++++.||++|+|||++ +++++||+||++
T Consensus 33 ~~~~~G~~~g~~vv~~~~~G---------~g~~~~~~~vn~~a~~~~L-~~~Gv~~iI~~GsaG~l~-~~l~~GDlVI~~ 101 (241)
T TIGR01694 33 APIVVGRVAGVDVAFLPRHG---------RGHDIPPHEVNYRANIWAL-KSLGVKYVISVNAVGSLR-EEYPPGDLVVPD 101 (241)
T ss_pred CCEEEEEECCEEEEEEeCCC---------CCCccChHHCCcHHHHHHH-HHcCCCEEEEeccccccC-CCCCCCCEEEEh
Confidence 579999999999997 7789 999 9998888887 789999999999999999 899999999999
Q ss_pred ceeEecCCCCccCccccCCCCC--CCCCChhhh---------cCCcee-EEEEE--eccceecChHhHHHHHhCCCeEEc
Q 029435 121 DVAFHDRRIPIPVFDLYGVGQR--QAFSTPNLL---------RELNLK-VCKLS--TGDSLDMSSQDETSITANDATIKD 186 (193)
Q Consensus 121 ~~~~~d~~~~~~~f~~~~~~~~--p~~~~~~L~---------~~~~~~-~G~i~--T~d~~i~~~~~~~~l~~~~~~~vD 186 (193)
+.+++|.+.+...|+....+.. +..+|+.|. .+++++ .|.++ +||.|.. ++..+.|+++|++++|
T Consensus 102 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~L~~~l~~~a~~~~~~~~~~G~~~~~~G~~f~t-~~e~~~~~~~Ga~aVe 180 (241)
T TIGR01694 102 QFIDRTSGRPSTFFDGGKVVHVDFGDPYCEDLRQRLIESLRRLGLTVHDGGTYVCTEGPRFST-RAESRMFKSWGADIVG 180 (241)
T ss_pred hHhhccCCCCCccCCCCccCCCCCCCCCCHHHHHHHHHHHHHcCCcEEeceEEEeCcCCCcCC-HHHHHHHHHcCCeEEe
Confidence 9988886422111211000111 112344442 256788 79999 6668865 4455677778999999
Q ss_pred ccccccC
Q 029435 187 MEVRAEF 193 (193)
Q Consensus 187 ME~aAi~ 193 (193)
||+++++
T Consensus 181 ME~aa~~ 187 (241)
T TIGR01694 181 MTGVPEA 187 (241)
T ss_pred ccHHHHH
Confidence 9999874
No 32
>PRK07077 hypothetical protein; Provisional
Probab=99.81 E-value=3.6e-19 Score=146.41 Aligned_cols=135 Identities=15% Similarity=0.144 Sum_probs=100.4
Q ss_pred CCCceEEEEeecHHHHHHHHHhccccccCCCCCCCCCCeEEEEEEECCEeEEEEecCCCCCCCCCCCCHHHHHHHHHHHH
Q 029435 10 EAISSVVIIIAMQTEAMPLVNKFELKEDQDSVFPEGVPWVRYHGTYKDLHLNIIWPGKDTSLEVDSVGTISASLVTYASI 89 (193)
Q Consensus 10 ~~~~~i~Ii~A~~~E~~~l~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~~~G~~~~~~~~~iG~v~Aa~~~~~li 89 (193)
..++.|+|+++++.|.+ +... .+ +-++..| .|+..++..++ ++
T Consensus 7 ~~~~~vl~vt~~~~ea~-i~~g------------------------~~--~~~~~~g---------~~~~~~~a~~~-~~ 49 (238)
T PRK07077 7 RDPRPVLAVTGMAFEAR-IAAG------------------------PG--VEVVCAA---------RADRLERALLA-AF 49 (238)
T ss_pred CCCccEEEEEecHHHHH-HhcC------------------------CC--ceEEecC---------CCHHHHHHHHH-HH
Confidence 34567999999999988 3221 11 3345667 88877777666 66
Q ss_pred HHhCCCEEEEEeeeCccCCCCCCcccEEEecceeEecCCCCccCccccCCCCCCCCCC---hhhh---cCCceeEEEEEe
Q 029435 90 QALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVGQRQAFST---PNLL---RELNLKVCKLST 163 (193)
Q Consensus 90 ~~~~~~~vi~~G~aG~l~~~~~~iGDvvi~~~~~~~d~~~~~~~f~~~~~~~~p~~~~---~~L~---~~~~~~~G~i~T 163 (193)
...+|+.||++|+||||+ +++++||+||++++.+++. . | ... +.+.+ ..+. ...+++.|+++|
T Consensus 50 ~~~~~~~vIs~G~AGgL~-p~l~vGDvVva~~v~~~~g--~---~---~~d--~~l~~~l~~~l~~~~~~~~v~~G~i~T 118 (238)
T PRK07077 50 DARGCAGIVSFGVAGGLD-PDLAPGDLVVATAVDAPFG--R---V---DTD--ARWSARLAAALELTPVARRVVRGGLAG 118 (238)
T ss_pred HhcCCCEEEEEEeccccC-CCCCCCcEEEEeeeecCCC--c---C---cCC--HHHHHHHHHHHHhccCCCceEEEEEEe
Confidence 678999999999999999 8999999999999876553 1 1 110 11110 1111 134789999999
Q ss_pred ccceecChHhHHHHHh-CCCeEEccccccc
Q 029435 164 GDSLDMSSQDETSITA-NDATIKDMEVRAE 192 (193)
Q Consensus 164 ~d~~i~~~~~~~~l~~-~~~~~vDME~aAi 192 (193)
+|.|+.+.+.++.|++ +++++||||++|+
T Consensus 119 ~D~~v~~~~~k~~L~~~~gA~aVDMEsaAv 148 (238)
T PRK07077 119 VEAPVVGAAAKAALHRATGALAVDMESHIA 148 (238)
T ss_pred cCeeecCHHHHHHHHHhCCCEEEehhHHHH
Confidence 9999999998888886 5999999999986
No 33
>PRK08202 purine nucleoside phosphorylase; Provisional
Probab=99.80 E-value=2.2e-18 Score=144.78 Aligned_cols=164 Identities=19% Similarity=0.169 Sum_probs=118.7
Q ss_pred ceEEEEeecHHHHHHHHHhccccccCC----CCCC----CCCCeEEEEEEECCEeEEEEecCCCCCCCCCCC----CHHH
Q 029435 13 SSVVIIIAMQTEAMPLVNKFELKEDQD----SVFP----EGVPWVRYHGTYKDLHLNIIWPGKDTSLEVDSV----GTIS 80 (193)
Q Consensus 13 ~~i~Ii~A~~~E~~~l~~~l~~~~~~~----~~~~----~~~~~~~~~g~~~~~~v~~~~~G~~~~~~~~~i----G~v~ 80 (193)
++|+||+..-.- .+.+.+....... +-|| ++-.-+|+.|+++|++|+++++| + |+++
T Consensus 22 ~~i~iI~GsGl~--~~~~~~~~~~~~~y~~ip~f~~~~v~gh~~~~~~G~l~g~~Vv~~~g~---------~H~yeG~~~ 90 (272)
T PRK08202 22 PEIGLILGSGLG--ALADEIENAVVIPYADIPGFPVSTVEGHAGELVLGRLGGKPVLAMQGR---------FHYYEGYSM 90 (272)
T ss_pred CCEEEEeCCchh--HHHHHhcCcEEEecccCCCCCCCCCcCCCceEEEEEECCEEEEEEccC---------CcccCCCCH
Confidence 589999987542 3233333221111 1121 11245689999999999999999 9 9999
Q ss_pred HHHHHH-HHHHHhCCCEEEEEeeeCccCCCCCCcccEEEecceeEecCCCCccCccccCC-CCCCC---C---CChhhh-
Q 029435 81 ASLVTY-ASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGV-GQRQA---F---STPNLL- 151 (193)
Q Consensus 81 Aa~~~~-~li~~~~~~~vi~~G~aG~l~~~~~~iGDvvi~~~~~~~d~~~~~~~f~~~~~-~~~p~---~---~~~~L~- 151 (193)
+++++. +++.+++++.||++|+||||+ +++++||+||+++.++++...+ .+ .|.. +..|. + .|+.|.
T Consensus 91 ~~~~a~i~~l~~lGv~~II~tgaaGsL~-~~l~~GDiVi~~d~i~~~~~~~--~~-g~~~~~~~~~~~~~~~~~d~~L~~ 166 (272)
T PRK08202 91 EAVTFPVRVMKALGVETLIVTNAAGGLN-PDFGPGDLMLISDHINLTGRNP--LI-GPNDDEFGPRFPDMSDAYDPELRA 166 (272)
T ss_pred HHHHHHHHHHHHcCCCEEEEecccccCC-CCCCCCCEEEEchhhhhCCCCc--cc-CCCcccCCCccCCCCcccCHHHHH
Confidence 999987 499999999999999999999 8999999999999999886533 11 1111 11121 1 234442
Q ss_pred --------cCCceeEEEE--EeccceecChHhHHHHHhCCCeEEccccccc
Q 029435 152 --------RELNLKVCKL--STGDSLDMSSQDETSITANDATIKDMEVRAE 192 (193)
Q Consensus 152 --------~~~~~~~G~i--~T~d~~i~~~~~~~~l~~~~~~~vDME~aAi 192 (193)
.+++++.|++ .+||+|....+. +.++++|+++||||++++
T Consensus 167 ~l~~~a~~~~~~~~~G~y~~~~Gp~feT~aE~-~~~~~~Gad~VgMe~~~e 216 (272)
T PRK08202 167 LAKKVAKELGIPLQEGVYVGVSGPSYETPAEI-RMLRTLGADAVGMSTVPE 216 (272)
T ss_pred HHHHHHHHcCCceeeEEEEEeeCCCcCCHHHH-HHHHHcCCcEEecChHHH
Confidence 2577899998 999999987774 466678999999999875
No 34
>TIGR01699 XAPA xanthosine phosphorylase. (TIGR01698, TIGR01700).
Probab=99.68 E-value=4.9e-16 Score=128.74 Aligned_cols=163 Identities=15% Similarity=0.166 Sum_probs=114.4
Q ss_pred EEEEeecHHHHHHHHHhccccccCC----CCCC----CCCCeEEEEEEECCEeEEEEecCCCCCCCCCCCCHHHHHHHHH
Q 029435 15 VVIIIAMQTEAMPLVNKFELKEDQD----SVFP----EGVPWVRYHGTYKDLHLNIIWPGKDTSLEVDSVGTISASLVTY 86 (193)
Q Consensus 15 i~Ii~A~~~E~~~l~~~l~~~~~~~----~~~~----~~~~~~~~~g~~~~~~v~~~~~G~~~~~~~~~iG~v~Aa~~~~ 86 (193)
++||+.. -+..+.+.+....... +-|| ++-.-.++.|+++|++|++ .+| .|+++++..++
T Consensus 2 ~~ii~Gs--gl~~~~~~~~~~~~i~y~~ip~~p~~~v~gh~g~l~~G~l~g~~Vv~-~~G---------r~h~y~g~~~~ 69 (248)
T TIGR01699 2 VAFILGS--GLGALADQIENAVAISYEKLPGFPVSTVHGHAGELVLGHLQGVPVVC-MKG---------RGHFYEGRGMT 69 (248)
T ss_pred EEEEeeC--cHHHHHHhccCCEEEECCCCCCCCCCcccCCcceEEEEEECCEEEEE-EeC---------CCcccCCcchh
Confidence 6777766 3445555554443211 1111 1113469999999999999 679 99999999999
Q ss_pred HHH------HHhCCCEEEEEeeeCccCCCCCCcccEEEecceeEecCCCCc-----cCccccCCCCCCCCCChhhh----
Q 029435 87 ASI------QALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPI-----PVFDLYGVGQRQAFSTPNLL---- 151 (193)
Q Consensus 87 ~li------~~~~~~~vi~~G~aG~l~~~~~~iGDvvi~~~~~~~d~~~~~-----~~f~~~~~~~~p~~~~~~L~---- 151 (193)
.++ .+++++.||++|.+||++ +++++||+|++++.+++-.+.+. ..|+.......+.| |+.|.
T Consensus 70 ~~~~~i~~l~~lGv~~iI~t~aaG~l~-~~l~~Gdlvi~~d~i~~t~~~p~~~~~~~~~g~~~~~~~~~y-d~~Lr~~~~ 147 (248)
T TIGR01699 70 IMTDAIRTFKLLGCELLFCTNAAGSLR-PEVGAGSLVALKDHINTMPGTPMVGLNDDRFGERFFSLANAY-DAEYRALLQ 147 (248)
T ss_pred hhcchHHHHHHcCCCEEEEecceeccC-CCCCCCCEECHHHHhhcCCCCCccCCCcccCCCCCCCCCCcc-CHHHHHHHH
Confidence 888 899999999999999999 89999999999999988432110 01110001111111 33331
Q ss_pred -----cCCceeEEEEEe--ccceecChHhHHHHHhCCCeEEccccccc
Q 029435 152 -----RELNLKVCKLST--GDSLDMSSQDETSITANDATIKDMEVRAE 192 (193)
Q Consensus 152 -----~~~~~~~G~i~T--~d~~i~~~~~~~~l~~~~~~~vDME~aAi 192 (193)
.+++++.|+.++ ||+|...++. +.++++|+++|+||+++.
T Consensus 148 ~~a~~~~~~~~~Gvy~~~~GP~FeT~AE~-r~~~~~Gad~VgMs~vpE 194 (248)
T TIGR01699 148 KVAKEEGFPLTEGVFVSYPGPNFETAAEI-RMMQIIGGDVVGMSVVPE 194 (248)
T ss_pred HHHHHcCCceeeEEEEEeeCCCcCCHHHH-HHHHHcCCcEEccchhHH
Confidence 256789999999 9999987774 566778999999999863
No 35
>PRK09136 5'-methylthioadenosine phosphorylase; Validated
Probab=99.64 E-value=4.9e-15 Score=122.65 Aligned_cols=131 Identities=13% Similarity=0.156 Sum_probs=98.8
Q ss_pred CeEEEEEEECCEeEE-EEecCCCCCCCCCCCC------HHH--HHHHHHHHHHHhCCCEEEEEeeeCccCCCCCCcccEE
Q 029435 47 PWVRYHGTYKDLHLN-IIWPGKDTSLEVDSVG------TIS--ASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVF 117 (193)
Q Consensus 47 ~~~~~~g~~~~~~v~-~~~~G~~~~~~~~~iG------~v~--Aa~~~~~li~~~~~~~vi~~G~aG~l~~~~~~iGDvv 117 (193)
...++.|+++|++|+ +.++| .| ++| |.+.+ +.+++++.||++|.|||++ +++++||+|
T Consensus 32 ~~~l~~G~l~g~~Vv~l~RhG---------~~h~~~~~~V~~~A~i~a---l~~lGv~~ii~t~aaG~l~-~~l~~Gdlv 98 (245)
T PRK09136 32 SGPLTFGTLAGREVVFLARHG---------HGHTIPPHKVNYRANIWA---LKQAGATRVLAVNTVGGIH-ADMGPGTLV 98 (245)
T ss_pred cccEEEEEECCEEEEEEecCC---------CCCCCChHHcCcHHHHHH---HHHcCCCEEEEecccccCC-CCCCCCCEE
Confidence 467899999999998 55678 78 887 45554 6789999999999999999 899999999
Q ss_pred EecceeEecCCCCccCccccCCCCCCC----CC-Chhhh---------cCCcee-EEEEE--eccceecChHhHHHHHhC
Q 029435 118 LISDVAFHDRRIPIPVFDLYGVGQRQA----FS-TPNLL---------RELNLK-VCKLS--TGDSLDMSSQDETSITAN 180 (193)
Q Consensus 118 i~~~~~~~d~~~~~~~f~~~~~~~~p~----~~-~~~L~---------~~~~~~-~G~i~--T~d~~i~~~~~~~~l~~~ 180 (193)
|+++.++++.+.+...|+ ++....+- .+ |++|. .+++++ .|..+ +|++| .++.+...++++
T Consensus 99 i~~d~i~~~~~~p~t~~~-~~~~~~~~~~~~~~~d~~L~~~~~~~a~~~~~~~~~~Gvy~~~~GP~f-eT~AE~r~lr~~ 176 (245)
T PRK09136 99 VPDQIIDYTWGRKSTFFE-GDGEEVTHIDFTHPYSPMLRQRLLAAARAAGVSLVDGGVYAATQGPRL-ETAAEIARLERD 176 (245)
T ss_pred EEHHHhhccCCCCCCCCC-CCCCCCCCCCCcccCCHHHHHHHHHHHHHcCCcEEeccEEEEeeCCCc-CCHHHHHHHHHc
Confidence 999999888753221232 22222221 12 34442 256666 58887 99999 888888889989
Q ss_pred CCeEEccccccc
Q 029435 181 DATIKDMEVRAE 192 (193)
Q Consensus 181 ~~~~vDME~aAi 192 (193)
|+++|+||+++.
T Consensus 177 Gad~VgMs~~pE 188 (245)
T PRK09136 177 GCDLVGMTGMPE 188 (245)
T ss_pred CCCEEcCcHHHH
Confidence 999999999863
No 36
>PRK08564 5'-methylthioadenosine phosphorylase II; Reviewed
Probab=98.36 E-value=1.4e-05 Score=67.16 Aligned_cols=171 Identities=13% Similarity=0.134 Sum_probs=101.8
Q ss_pred ccccCCCceEEEEeecHH-HHHHHHHhccccccCCCCCCCCCCeEEEEEEECCEeEEEEe-cCCCCCCCCCCCCHHHHHH
Q 029435 6 EKSQEAISSVVIIIAMQT-EAMPLVNKFELKEDQDSVFPEGVPWVRYHGTYKDLHLNIIW-PGKDTSLEVDSVGTISASL 83 (193)
Q Consensus 6 ~~~~~~~~~i~Ii~A~~~-E~~~l~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~~-~G~~~~~~~~~iG~v~Aa~ 83 (193)
+||.+ ++|+||..... ++..+.+...... ..++.+ -.-.+..|++.|++|+++. .|..-.|.-- .+|-.
T Consensus 3 ~~~~~--~~igiIgGSGl~~~~~l~~~~~~~~--~tpyg~-p~~~l~~g~l~g~~v~~l~RhGr~H~y~~~---~i~~~- 73 (267)
T PRK08564 3 EPNEK--ASIGIIGGSGLYDPGIFENSKEVKV--YTPYGE-PSDNIIIGEIEGVEVAFLPRHGRGHRIPPH---KINYR- 73 (267)
T ss_pred CCCCC--ceEEEEecCCCCCCcccccceeeeE--EcCCCC-CccCEEEEEECCEEEEEEeCCCCCcccCCc---cCcch-
Confidence 35555 48999998865 2233433333222 122211 1234667999999998883 5544444322 23322
Q ss_pred HHHHHHHHhCCCEEEEEeeeCccCCCCCCcccEEEecceeEecCCCCccCccccCCCCCC--CCC---Chhhh-------
Q 029435 84 VTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVGQRQ--AFS---TPNLL------- 151 (193)
Q Consensus 84 ~~~~li~~~~~~~vi~~G~aG~l~~~~~~iGDvvi~~~~~~~d~~~~~~~f~~~~~~~~p--~~~---~~~L~------- 151 (193)
+--+.+...+++.||.+|.+||++ +++++||+||++..+......+. .| +.....+ .+. |+.|.
T Consensus 74 a~i~aLk~LGvk~iI~tnavGsl~-~~~~pGDlVv~~D~I~~tg~~p~-t~--~~g~~~~~~~~~~~y~~~Lr~~l~~aA 149 (267)
T PRK08564 74 ANIWALKELGVEWVIAVSAVGSLR-EDYKPGDFVIPDQFIDMTKKREY-TF--YDGPVVAHVSMADPFCPELRKIIIETA 149 (267)
T ss_pred HHHHHHHHCCCcEEEEeccccccC-CCCCCCCEEeehhhhccCCCCCc-cc--CCCCccccCCCCcccCHHHHHHHHHHH
Confidence 223446788999999999999999 89999999999998866543221 11 1101110 111 23331
Q ss_pred --cCCcee-EEEEEeccc-eecChHhHHHHHhC-CCeEEcccc
Q 029435 152 --RELNLK-VCKLSTGDS-LDMSSQDETSITAN-DATIKDMEV 189 (193)
Q Consensus 152 --~~~~~~-~G~i~T~d~-~i~~~~~~~~l~~~-~~~~vDME~ 189 (193)
.+++++ .|+.+..+- =+.++.+.+.++.. |+++|-|=+
T Consensus 150 ~~~g~~~~~~GvY~~~~GP~fET~AEir~~r~~~GaD~VGMS~ 192 (267)
T PRK08564 150 KELGIRTHEKGTYICIEGPRFSTRAESRMWREVFKADIIGMTL 192 (267)
T ss_pred HHcCCceecceEEEEeeCCCcCCHHHHHHHHHccCCCEeccCc
Confidence 256777 487554433 23455667788886 999999954
No 37
>TIGR01698 PUNP purine nucleotide phosphorylase. methylthioadenosine.
Probab=98.25 E-value=0.00011 Score=60.68 Aligned_cols=133 Identities=18% Similarity=0.145 Sum_probs=85.6
Q ss_pred eEEEEEEECCEeEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeeeCccCCCCCCcccEEEecceeEecC
Q 029435 48 WVRYHGTYKDLHLNIIWPGKDTSLEVDSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDR 127 (193)
Q Consensus 48 ~~~~~g~~~~~~v~~~~~G~~~~~~~~~iG~v~Aa~~~~~li~~~~~~~vi~~G~aG~l~~~~~~iGDvvi~~~~~~~d~ 127 (193)
-++..|+++|++|++.+ |..=.|.-- .+|...+--+++...+++.+|.+..+||++ +++++||+++.++.++...
T Consensus 41 g~l~~G~l~g~~V~~l~-Gr~H~yeg~---~~~~v~~~i~al~~lGv~~ii~tna~Gsl~-~~~~pGdlv~~~D~I~~t~ 115 (237)
T TIGR01698 41 GELIRVRIGDGPVLVLG-GRTHAYEGG---DARAVVHPVRTARATGAETLILTNAAGGLR-QDWGPGTPVLISDHINLTA 115 (237)
T ss_pred ceEEEEEECCEEEEEEc-CCCcccCCC---cHHHhHHHHHHHHHcCCCEEEEEcccccCC-CCCCCCCEEeechhcccCC
Confidence 36778999999999888 633334322 234323334556778999999999999999 8999999999999886544
Q ss_pred CCCccCccccCCCCCCCCCChhhh-----cCCceeEEEEEe--ccceecChHhHHHHHhCCCeEEcccc
Q 029435 128 RIPIPVFDLYGVGQRQAFSTPNLL-----RELNLKVCKLST--GDSLDMSSQDETSITANDATIKDMEV 189 (193)
Q Consensus 128 ~~~~~~f~~~~~~~~p~~~~~~L~-----~~~~~~~G~i~T--~d~~i~~~~~~~~l~~~~~~~vDME~ 189 (193)
+.+ -++.........| |+.|. .+++++.|.-+. |.+| .++.+.+.++..|+++|=|=+
T Consensus 116 ~~p--l~g~~~~d~~~~y-d~~Lr~~a~~~~~~~~~GvY~~~~GP~f-ET~AEir~~r~~GaD~VGMS~ 180 (237)
T TIGR01698 116 RSP--LIGPRFVDLTDAY-SPRLRELAERVDPPLAEGVYAWFPGPHY-ETPAEIRMAGILGADLVGMST 180 (237)
T ss_pred CCC--CCCCccCCCCccc-CHHHHHHHHHcCCCccCEEEEEecCCCc-CCHHHHHHHHHcCCCEeccCc
Confidence 322 1210001111111 23332 255677887444 3343 445567778888999999954
No 38
>KOG3728 consensus Uridine phosphorylase [Nucleotide transport and metabolism]
Probab=98.21 E-value=1.7e-05 Score=64.80 Aligned_cols=161 Identities=16% Similarity=0.075 Sum_probs=101.9
Q ss_pred EEEEeecHHHHHHHHHhccccccCCCCC--CCCCCeEEEEEEECCEeEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHHh
Q 029435 15 VVIIIAMQTEAMPLVNKFELKEDQDSVF--PEGVPWVRYHGTYKDLHLNIIWPGKDTSLEVDSVGTISASLVTYASIQAL 92 (193)
Q Consensus 15 i~Ii~A~~~E~~~l~~~l~~~~~~~~~~--~~~~~~~~~~g~~~~~~v~~~~~G~~~~~~~~~iG~v~Aa~~~~~li~~~ 92 (193)
+.-+..++..++.+...+...-....+- ++.-........|+--+|..+..| ||.++-++.+.++|.-.
T Consensus 54 fVC~GGtp~Rmk~~a~~~~~el~~~~~~~~~di~a~sdRyamYKvGPVl~vsHG---------mGtpS~SImlhEliKLl 124 (308)
T KOG3728|consen 54 FVCMGGTPSRMKQFALYLRDELGVSCSGDPVDICARSDRYAMYKVGPVLCVSHG---------MGTPSFSIMLHELIKLL 124 (308)
T ss_pred EEEeCCCHHHHHHHHHHHHHHhCCCCCCCCcchhcccceeEEEeecceEEEecC---------CCCccHHHHHHHHHHHH
Confidence 4445567788888877654433221100 011122222345666689999999 99999999999998643
Q ss_pred ---C--CCEEEEEeeeCccCCCCCCcccEEEecceeEecCCCCccCccccCCCC---CCCCCChhh----h-------cC
Q 029435 93 ---K--PDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVGQ---RQAFSTPNL----L-------RE 153 (193)
Q Consensus 93 ---~--~~~vi~~G~aG~l~~~~~~iGDvvi~~~~~~~d~~~~~~~f~~~~~~~---~p~~~~~~L----~-------~~ 153 (193)
+ --.+|.+|+|||+. +.+|.+|++++.+..-.+.+ |+..-.|+ .|.--++.| . .+
T Consensus 125 ~~Arckdp~~iRiGT~GGiG---v~pGTvV~s~~A~n~~l~~e---~eqiilGkrv~Rpaqld~~l~~eL~~~~~e~~d~ 198 (308)
T KOG3728|consen 125 YYARCKDPVFIRIGTCGGIG---VPPGTVVASKNAFNGLLRNE---HEQIILGKRVVRPAQLDKKLIRELLAFGVEANDG 198 (308)
T ss_pred HHccCCCceEEEEeccCccC---CCCccEEEehhhhhhhhhhh---HHhhhccceeechhhhhHHHHHHHHHhCCccCCC
Confidence 2 23789999999997 78999999999876554332 21111222 121112222 1 25
Q ss_pred CceeEEEEEeccceecChH-------------hHHHHHh---CCCeEEccccc
Q 029435 154 LNLKVCKLSTGDSLDMSSQ-------------DETSITA---NDATIKDMEVR 190 (193)
Q Consensus 154 ~~~~~G~i~T~d~~i~~~~-------------~~~~l~~---~~~~~vDME~a 190 (193)
+....|++.++|-|+..+. +...|++ .|.--+|||+.
T Consensus 199 ~~ti~gnTmctddFYEGQgRlDGa~CdysEkdK~afLek~~a~GVrNIEMEss 251 (308)
T KOG3728|consen 199 FQTISGNTMCTDDFYEGQGRLDGAFCDYSEKDKMAFLEKLHALGVRNIEMESS 251 (308)
T ss_pred CceeeccceecchhhcccccccccccCcchhhHHHHHHHHHHcCceeeehhHH
Confidence 7889999999999986542 2233443 49999999985
No 39
>PRK07432 5'-methylthioadenosine phosphorylase; Provisional
Probab=98.14 E-value=6.4e-05 Score=63.83 Aligned_cols=166 Identities=15% Similarity=0.142 Sum_probs=93.7
Q ss_pred ceEEEEeecHHHHHHHHHhccccccC--CCCCCCCCCeEEEEEEECCEeEEEE-ecCCCCCCCCCCCCHHHHHHHHHHHH
Q 029435 13 SSVVIIIAMQTEAMPLVNKFELKEDQ--DSVFPEGVPWVRYHGTYKDLHLNII-WPGKDTSLEVDSVGTISASLVTYASI 89 (193)
Q Consensus 13 ~~i~Ii~A~~~E~~~l~~~l~~~~~~--~~~~~~~~~~~~~~g~~~~~~v~~~-~~G~~~~~~~~~iG~v~Aa~~~~~li 89 (193)
++|+||.....-- +. .|...+.. +.++. .-.-.+..|+++|++|++. ..|..-.|. .-.+|-.. .-+++
T Consensus 4 ~~igIIgGSGl~~--l~-~l~~~~~~~~~tp~G-~ps~~l~~G~l~g~~v~~l~RhGr~H~y~---p~~i~~rA-ni~al 75 (290)
T PRK07432 4 AKIGIIGGSGLYK--ME-ALKDVEEVQLETPFG-SPSDALIVGTLDGTRVAFLARHGRNHTLL---PTELPFRA-NIYAM 75 (290)
T ss_pred CcEEEEecCccCC--hh-hcCcceEEEeeCCCC-CCCCCEEEEEECCEEEEEEECCCCCCccC---hhhcCcHH-HHHHH
Confidence 3799999886432 11 22222221 11221 1123567799999998877 244233331 11222221 12456
Q ss_pred HHhCCCEEEEEeeeCccCCCCCCcccEEEecceeEecCCCCccCccccCCCCCCCCC---Chhhh---------cCC---
Q 029435 90 QALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVGQRQAFS---TPNLL---------REL--- 154 (193)
Q Consensus 90 ~~~~~~~vi~~G~aG~l~~~~~~iGDvvi~~~~~~~d~~~~~~~f~~~~~~~~p~~~---~~~L~---------~~~--- 154 (193)
...+++.||.+..+||++ +++++||+++.+..+..-.......|+....+.. .+. ++.|. .++
T Consensus 76 k~lGv~~ii~tna~Gsln-~~~~pGdlvv~~D~Id~t~~rp~t~~~~~~~~~~-~~~~~y~~~Lr~~l~~~a~~~~~~~~ 153 (290)
T PRK07432 76 KQLGVEYLISASAVGSLK-EEAKPLDMVVPDQFIDRTKNRISTFFGEGIVAHI-GFGDPICPALAGVLADAIASLNLPDV 153 (290)
T ss_pred HHcCCCEEEEEecccccc-CCCCCCCEEeecceecCCCCCCCcccCCCcccCC-cCCCCcCHHHHHHHHHHHHHcCCCcc
Confidence 778999999999999999 8999999999999886433211101221111111 121 23331 122
Q ss_pred cee-EEEEEecc--ceecChHhHHHHHhCCCeEEcccc
Q 029435 155 NLK-VCKLSTGD--SLDMSSQDETSITANDATIKDMEV 189 (193)
Q Consensus 155 ~~~-~G~i~T~d--~~i~~~~~~~~l~~~~~~~vDME~ 189 (193)
+++ .|+.+..+ +| .++.+...++..|+++|-|=+
T Consensus 154 ~~~~~GvYv~~~GPrf-ET~AEir~~r~~GaDvVGMS~ 190 (290)
T PRK07432 154 TLHRGGTYVCMEGPAF-STKAESNLYRSWGATVIGMTN 190 (290)
T ss_pred ceeCCeEEEEeeCCCC-CcHHHHHHHHHcCCCEeccCc
Confidence 566 58755444 43 345556677778999999954
No 40
>PRK07823 5'-methylthioadenosine phosphorylase; Validated
Probab=98.03 E-value=0.00034 Score=58.69 Aligned_cols=166 Identities=11% Similarity=0.138 Sum_probs=95.8
Q ss_pred CCCceEEEEeecHHHHHHHHH-hccccccCCCCCCCCCCeEEEEEEECCEeEEEE-ecCCCCCCCCCCCCHHHHHHHHHH
Q 029435 10 EAISSVVIIIAMQTEAMPLVN-KFELKEDQDSVFPEGVPWVRYHGTYKDLHLNII-WPGKDTSLEVDSVGTISASLVTYA 87 (193)
Q Consensus 10 ~~~~~i~Ii~A~~~E~~~l~~-~l~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~-~~G~~~~~~~~~iG~v~Aa~~~~~ 87 (193)
+..++|+||+..... .+.+ .... .....++.+ -.-.+..|+++|++|+++ ..|-.-.|.-..+- +.|-+ +
T Consensus 3 ~~~p~igII~GSGl~--~l~~~~~~~-~~~~tpyg~-~sg~l~~G~l~g~~v~~l~RhGr~H~ye~~~i~-~rani---~ 74 (264)
T PRK07823 3 NNGAMLGVIGGSGFY--SFFGSDARE-VNVDTPYGP-PSAPITIGEVGGRRVAFLPRHGRDHEFSPHTVP-YRANM---W 74 (264)
T ss_pred CCCceEEEEeccccc--hhhccccee-eEEeccCCC-CCCCEEEEEECCEEEEEEeCCCCCCCcCCCCcc-chHHH---H
Confidence 445789999988553 2333 1211 112222311 113477799999998887 24434444332222 22222 3
Q ss_pred HHHHhCCCEEEEEeeeCccCCCCCCcccEEEecceeEecCCCCccCccccCCCC-CCCCC---Chhhh------cCCcee
Q 029435 88 SIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVGQ-RQAFS---TPNLL------RELNLK 157 (193)
Q Consensus 88 li~~~~~~~vi~~G~aG~l~~~~~~iGDvvi~~~~~~~d~~~~~~~f~~~~~~~-~p~~~---~~~L~------~~~~~~ 157 (193)
++...+++.||.+..+||++ +++++||+++.+.++..-..... .| +..|. .+.+. |+.|. .. .++
T Consensus 75 alk~lGv~~ii~tnA~Gsln-~~~~pGdlvi~dd~id~t~~~p~-t~--~~~g~~f~~m~~~y~~~Lr~~l~~~a~-~~~ 149 (264)
T PRK07823 75 ALRALGVRRVFAPCAVGSLR-PELGPGTVVVPDQLVDRTSGRAQ-TY--FDSGGVHVSFADPYCPTLRAAALGLPG-VVD 149 (264)
T ss_pred HHHHcCCCEEEEecccccCC-CCCCCCCEEEcchhhhccCCCCC-Cc--cCCCccCCCCCcccCHHHHHHHHHHHh-hcC
Confidence 45677999999999999999 89999999998887643321111 22 12221 11111 23332 12 466
Q ss_pred EEEEEe--ccceecChHhHHHHHhCCCeEEcccc
Q 029435 158 VCKLST--GDSLDMSSQDETSITANDATIKDMEV 189 (193)
Q Consensus 158 ~G~i~T--~d~~i~~~~~~~~l~~~~~~~vDME~ 189 (193)
.|+.+. |.+| .++.+.+.++..|+++|-|=+
T Consensus 150 ~GvY~~~~GP~f-ET~AEir~~r~~GaDvVGMS~ 182 (264)
T PRK07823 150 GGTMVVVQGPRF-STRAESRWFAAQGWSLVNMTG 182 (264)
T ss_pred CeEEEEeeCCCC-CCHHHHHHHHHcCCCEeccCc
Confidence 776444 3333 345566777778999999944
No 41
>PF06516 NUP: Purine nucleoside permease (NUP); InterPro: IPR009486 This family consists of several purine nucleoside permease from both bacteria and fungi [].; GO: 0055085 transmembrane transport
Probab=98.01 E-value=2.1e-05 Score=67.15 Aligned_cols=103 Identities=23% Similarity=0.228 Sum_probs=78.0
Q ss_pred ceEEEEeecHHHHHHHHHhccccccCCCCCCCCCCeEEEEEEEC-CEeEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 029435 13 SSVVIIIAMQTEAMPLVNKFELKEDQDSVFPEGVPWVRYHGTYK-DLHLNIIWPGKDTSLEVDSVGTISASLVTYASIQA 91 (193)
Q Consensus 13 ~~i~Ii~A~~~E~~~l~~~l~~~~~~~~~~~~~~~~~~~~g~~~-~~~v~~~~~G~~~~~~~~~iG~v~Aa~~~~~li~~ 91 (193)
.|+.||+..+.|.++-.++++..+... +| +....+..-..+ ++.|..+.|| +|+.|||..+..|...
T Consensus 3 ~KV~VvtmFe~E~q~W~e~~~l~~~i~--vp-G~s~~~~~v~cn~~~~Vc~~~tG---------~G~~nAAasi~AL~ld 70 (314)
T PF06516_consen 3 PKVVVVTMFEGEFQPWLERLDLDHNIT--VP-GLSPLYPPVHCNADGGVCGITTG---------EGEINAAASIMALGLD 70 (314)
T ss_pred ceEEEEeCCCHHHhhhhhccCCCeEEe--eC-CCCCCCCceEEcCCCCEEEEEec---------ccccchHHHHHHHhhC
Confidence 579999999999999999987755433 22 221112222234 4489999999 9999999999999854
Q ss_pred hCCC----EEEEEeeeCccCCCCCCcccEEEecceeEecCC
Q 029435 92 LKPD----LIINAGTAGGFKAKGASIGDVFLISDVAFHDRR 128 (193)
Q Consensus 92 ~~~~----~vi~~G~aG~l~~~~~~iGDvvi~~~~~~~d~~ 128 (193)
-+.| .+|..||||.-. ....+|++.++..+++.|..
T Consensus 71 p~FDls~tYfliaGIAGv~P-~~~tlGSvawA~~~Vd~dl~ 110 (314)
T PF06516_consen 71 PRFDLSKTYFLIAGIAGVDP-KQGTLGSVAWARYVVDGDLQ 110 (314)
T ss_pred CccCCcceEEEEeecccCCc-CcCceeeeeeeeeeechhhc
Confidence 3443 799999999544 89999999999999988854
No 42
>PRK08931 5'-methylthioadenosine phosphorylase; Provisional
Probab=97.97 E-value=0.00011 Score=62.40 Aligned_cols=167 Identities=12% Similarity=0.084 Sum_probs=95.6
Q ss_pred ceEEEEeecHHH-HHHHHHhccccccCCCCCCCCCCeEEEEEEECCEeEEEEe-cCCCCCCCCCCCCHHHHHHHHHHHHH
Q 029435 13 SSVVIIIAMQTE-AMPLVNKFELKEDQDSVFPEGVPWVRYHGTYKDLHLNIIW-PGKDTSLEVDSVGTISASLVTYASIQ 90 (193)
Q Consensus 13 ~~i~Ii~A~~~E-~~~l~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~~-~G~~~~~~~~~iG~v~Aa~~~~~li~ 90 (193)
++|+||.....- +..+.+..... ...++.+ -.-.+..|+++|++|+++. .|..-.| ..-.+|-.. --+++.
T Consensus 4 p~igIIgGSGl~~~~~l~~~~~~~--~~tpyg~-psg~l~~G~l~G~~V~~l~RhGr~H~y---~p~~i~~rA-ni~alk 76 (289)
T PRK08931 4 AVLGIIGGSGVYDIDGLEDARWER--VESPWGE-PSDALLFGRLGGVPMVFLPRHGRGHRL---SPSDINYRA-NIDALK 76 (289)
T ss_pred ceEEEEecCCcCCccccccceeee--eEcCCCC-CcCcEEEEEECCEEEEEEeCCCCCCcc---ChHHcccHH-HHHHHH
Confidence 479999887542 11222222221 1222211 1235778999999999986 6633333 122222221 224566
Q ss_pred HhCCCEEEEEeeeCccCCCCCCcccEEEecceeEecCCCCccCcccc---CCCCCCCCCChhhh---------cCCcee-
Q 029435 91 ALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLY---GVGQRQAFSTPNLL---------RELNLK- 157 (193)
Q Consensus 91 ~~~~~~vi~~G~aG~l~~~~~~iGDvvi~~~~~~~d~~~~~~~f~~~---~~~~~p~~~~~~L~---------~~~~~~- 157 (193)
..+++.||.+..|||++ +++++||+++++..+..-.....+.|+.. .....+.| ++.|. .+++++
T Consensus 77 ~lGv~~ii~tnA~Gsln-~~~~pGd~vi~~D~In~t~~~~~~~~g~~~~~f~~m~~~y-~~~Lr~~l~~~a~~~~~~~~~ 154 (289)
T PRK08931 77 RAGVTDIVSLSACGSFR-EELPPGTFVIVDQFIDRTFAREKSFFGTGCVAHVSMAHPV-CPRLGDRLAAAARAEGITVHR 154 (289)
T ss_pred HcCCCEEEEecccccCC-CCCCCCCEEeehhhhccCCCCCCCccCCCcccCCCCCccc-CHHHHHHHHHHHHHcCCeEec
Confidence 78999999999999999 89999999999998755322111123210 00111111 23331 255666
Q ss_pred EEE--EEeccceecChHhHHHHHhCCCeEEcccc
Q 029435 158 VCK--LSTGDSLDMSSQDETSITANDATIKDMEV 189 (193)
Q Consensus 158 ~G~--i~T~d~~i~~~~~~~~l~~~~~~~vDME~ 189 (193)
.|+ ...|.+| .++.+.+.++..|+++|-|=+
T Consensus 155 ~GvYv~~~GPrf-ET~AEir~~r~~GaDvVGMSt 187 (289)
T PRK08931 155 GGTYLCMEGPQF-STLAESKLYRSWGCDVIGMTN 187 (289)
T ss_pred ceEEEEeeCCCC-CCHHHHHHHHHcCCCEeccCc
Confidence 345 3444554 345556677778999999954
No 43
>COG0005 Pnp Purine nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=97.64 E-value=0.0023 Score=53.52 Aligned_cols=166 Identities=16% Similarity=0.172 Sum_probs=98.8
Q ss_pred CCceEEEEeecHH-HHHHHHHhccccccCCCCCCCCCCeEEEEEEEC--CEe-EEEEecCCCCCCCCCCCCHHHHHHHHH
Q 029435 11 AISSVVIIIAMQT-EAMPLVNKFELKEDQDSVFPEGVPWVRYHGTYK--DLH-LNIIWPGKDTSLEVDSVGTISASLVTY 86 (193)
Q Consensus 11 ~~~~i~Ii~A~~~-E~~~l~~~l~~~~~~~~~~~~~~~~~~~~g~~~--~~~-v~~~~~G~~~~~~~~~iG~v~Aa~~~~ 86 (193)
.+++|+||...-. ++....+ .........+|+ ......+.|++. +.+ .++...|.-=.|.--. ++...- -
T Consensus 15 ~~~~igiIgGSGl~~l~~~~~-~~~~~~~~tpfg-~~s~~~~~g~~~~~g~~v~~l~rhGr~H~y~ph~---~~~ran-i 88 (262)
T COG0005 15 EMPMIGIIGGSGLYDLADLLE-VREPYSDITPFG-VPSVPGHAGELVTLGGKVAFLARHGRGHSYPPHS---VNYRAN-I 88 (262)
T ss_pred CCccEEEEecccccccccccc-cceecccCCCCC-CCCCceEEEEEeecCceEEEEecCCCCCCCCCCC---chHHHH-H
Confidence 5688999998753 2222222 111111122332 124556778876 666 6677777443343322 333333 4
Q ss_pred HHHHHhCCCEEEEEeeeCccCCCCCCcccEEEecceeEec-CCCCccCccccCCCCCCCCC------Chhhh-------c
Q 029435 87 ASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHD-RRIPIPVFDLYGVGQRQAFS------TPNLL-------R 152 (193)
Q Consensus 87 ~li~~~~~~~vi~~G~aG~l~~~~~~iGDvvi~~~~~~~d-~~~~~~~f~~~~~~~~p~~~------~~~L~-------~ 152 (193)
+.+...+++.||.+-.+|||+ +++++||++++++.+++. ...+ | |..+..+.|+ |++|. +
T Consensus 89 ~alk~lGV~~vi~tnAvGsl~-~~~~pGd~vv~~d~Id~t~r~~~---~--~~~~~~~~~~d~s~~y~~~lr~~l~~~a~ 162 (262)
T COG0005 89 RALKALGVERVILTNAVGSLR-EEYKPGDLVVPDDHIDFTKRQNP---F--YGGNDGVRFVDMSDPYDPELREALAEAAK 162 (262)
T ss_pred HHHHHcCCeEEEEeccccccc-ccCCCCCEEeehhheeccCCCCc---c--cCCCCceeeCCCCCcCCHHHHHHHHHHHh
Confidence 667788999999999999999 899999999999999888 3333 2 2222112222 23331 1
Q ss_pred ----CCceeEEEE--EeccceecChHhHHHHHhCCCeEEcccc
Q 029435 153 ----ELNLKVCKL--STGDSLDMSSQDETSITANDATIKDMEV 189 (193)
Q Consensus 153 ----~~~~~~G~i--~T~d~~i~~~~~~~~l~~~~~~~vDME~ 189 (193)
....+.|.- .+|.+| .++.+.+-++.+|++++-|=+
T Consensus 163 ~~~~~~~~~~GvYv~~eGP~f-eT~AEirm~r~~GaDvVGMS~ 204 (262)
T COG0005 163 ELRLGHPLQEGVYVCVEGPRF-ETPAEIRMFRSLGADVVGMST 204 (262)
T ss_pred hcccCcccCceEEEEecCCCc-CCHHHHHHHHHhCCCcccCcC
Confidence 234445754 445554 345556777778999999954
No 44
>KOG3985 consensus Methylthioadenosine phosphorylase MTAP [Nucleotide transport and metabolism]
Probab=97.18 E-value=0.0064 Score=49.74 Aligned_cols=106 Identities=14% Similarity=0.134 Sum_probs=67.7
Q ss_pred ceEEEEeecHHHHHHHHH-hccccccCCCCCCCCCCeEEEEEEECCEeEE-EEecCCCCCCCCCCCCHHHHHHHHHHHHH
Q 029435 13 SSVVIIIAMQTEAMPLVN-KFELKEDQDSVFPEGVPWVRYHGTYKDLHLN-IIWPGKDTSLEVDSVGTISASLVTYASIQ 90 (193)
Q Consensus 13 ~~i~Ii~A~~~E~~~l~~-~l~~~~~~~~~~~~~~~~~~~~g~~~~~~v~-~~~~G~~~~~~~~~iG~v~Aa~~~~~li~ 90 (193)
-+++||.....+=-..++ ....... .++ ..-.-..-.|+++|..++ ++..|.---|- -++||-.+-.-. +.
T Consensus 10 VklGIIGGsGl~dp~ile~~ve~~v~--TP~-G~pSd~v~~g~i~gv~cvllARHGr~H~im---Pt~Vn~rANiwA-Lk 82 (283)
T KOG3985|consen 10 VKLGIIGGSGLYDPDILEDPVELVVP--TPW-GKPSDPVIIGQISGVHCVLLARHGRKHDIM---PTKVNFRANIWA-LK 82 (283)
T ss_pred EEEEEeccCCCCCchhhhcchhhcCC--CCC-CCcCCceeeeecCCeEEEEEeccccCCccC---CCcCchhHhHHH-HH
Confidence 468999887655333333 2111111 112 112345667889998754 45677222221 246666655544 45
Q ss_pred HhCCCEEEEEeeeCccCCCCCCcccEEEecceeEec
Q 029435 91 ALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHD 126 (193)
Q Consensus 91 ~~~~~~vi~~G~aG~l~~~~~~iGDvvi~~~~~~~d 126 (193)
..+++.||++--||+|+ +++++||+|+++++++..
T Consensus 83 ~~gc~~ii~~tAcGSLr-e~I~Pgd~v~p~q~IDrT 117 (283)
T KOG3985|consen 83 SLGCTAIISFTACGSLR-EEIKPGDFVLPDQIIDRT 117 (283)
T ss_pred hCCCcEEEEeecccccc-ccCCCccEecchhhhhhh
Confidence 77999999999999999 899999999999987433
No 45
>COG5042 NUP Purine nucleoside permease [Nucleotide transport and metabolism]
Probab=96.15 E-value=0.0051 Score=51.76 Aligned_cols=101 Identities=22% Similarity=0.249 Sum_probs=72.9
Q ss_pred ceEEEEeecHHHHHHHHHhccccccCCCCCCCCCCeEEEEEEECC-EeEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 029435 13 SSVVIIIAMQTEAMPLVNKFELKEDQDSVFPEGVPWVRYHGTYKD-LHLNIIWPGKDTSLEVDSVGTISASLVTYASIQA 91 (193)
Q Consensus 13 ~~i~Ii~A~~~E~~~l~~~l~~~~~~~~~~~~~~~~~~~~g~~~~-~~v~~~~~G~~~~~~~~~iG~v~Aa~~~~~li~~ 91 (193)
.++.||+-.+.|+++.++.++..++...+ +- .+-|-..+-+ ..|.-+.|| ||+.|||.++..|+..
T Consensus 38 ~KVmvItmF~~Eaqpwl~~l~lt~~I~vp---GL-s~~yP~v~cn~~gvcq~tTg---------mG~AnAassvsAL~ls 104 (349)
T COG5042 38 PKVMVITMFEIEAQPWLDGLDLTEKIAVP---GL-SPDYPAVHCNADGVCQMTTG---------MGKANAASSVSALLLS 104 (349)
T ss_pred ceEEEEEecccccchhhhcCCccceeecc---cc-CCCCcccccCccchhhhhcc---------cchhhHHHHHHHHHhc
Confidence 37999999999999999999977765321 11 1112222222 237778899 9999999999998865
Q ss_pred hCCC----EEEEEeeeCccCCCCCCcccEEEecceeEecC
Q 029435 92 LKPD----LIINAGTAGGFKAKGASIGDVFLISDVAFHDR 127 (193)
Q Consensus 92 ~~~~----~vi~~G~aG~l~~~~~~iGDvvi~~~~~~~d~ 127 (193)
-+.| ..+..||||= +|+.-.+|..-++.-++..|.
T Consensus 105 ~kfdlt~tyfLiAGIAGi-dP~~gtlGSaawARyaVD~dl 143 (349)
T COG5042 105 KKFDLTKTYFLIAGIAGI-DPKAGTLGSAAWARYAVDADL 143 (349)
T ss_pred cccCcceeeeeeeecccc-CccccccchhHHhhhhccccc
Confidence 4544 6888999985 547788998888877776664
No 46
>KOG3984 consensus Purine nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=96.02 E-value=0.27 Score=40.66 Aligned_cols=105 Identities=19% Similarity=0.194 Sum_probs=69.4
Q ss_pred CCCceEEEEeecHHHHHHHHHhccccccCC----CCCC----CCCCeEEEEEEECCEeEEEEecCCCCCCCCCCCCHHHH
Q 029435 10 EAISSVVIIIAMQTEAMPLVNKFELKEDQD----SVFP----EGVPWVRYHGTYKDLHLNIIWPGKDTSLEVDSVGTISA 81 (193)
Q Consensus 10 ~~~~~i~Ii~A~~~E~~~l~~~l~~~~~~~----~~~~----~~~~~~~~~g~~~~~~v~~~~~G~~~~~~~~~iG~v~A 81 (193)
...++++|||..- +-.+.+.+.+..... +-|| .+-.-+++.|+++|+++++.+.. .|.-+|.-.-+.
T Consensus 22 ~~rpk~gIICGSg--Lg~l~~~l~~p~i~pYedIP~Fp~s~vpghag~lvfG~l~G~pvv~mqgr---fh~yegy~L~~~ 96 (286)
T KOG3984|consen 22 HIRPKVGIICGSG--LGGLADKLSQPVIVPYEDIPNFPVSTVPGHAGRLVFGTLGGAPVVAMQGR---FHSYEGYPLAKC 96 (286)
T ss_pred ccCCceEEEecCC--cchhhhhccCCEEecHhhCCCCCcccCCCCcccEEEEecCCceEEEEccc---ccccCCccHHHh
Confidence 3457899999874 335555544433211 1111 12223578899999999988765 344444443333
Q ss_pred HHHHHHHHHHhCCCEEEEEeeeCccCCCCCCcccEEEecc
Q 029435 82 SLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISD 121 (193)
Q Consensus 82 a~~~~~li~~~~~~~vi~~G~aG~l~~~~~~iGDvvi~~~ 121 (193)
+.-. +.++..+++.++.+--|||++ ++.++||+-+...
T Consensus 97 tfpv-rVm~l~Gv~~lvvTnaAggin-~~f~vgdiMli~D 134 (286)
T KOG3984|consen 97 TFPV-RVMQLLGVRILVVTNAAGGIN-PKFAVGDIMLIKD 134 (286)
T ss_pred hhhH-HHHHHcCceEEEEeccccCcC-cccccccEEEEec
Confidence 3332 556778999999999999999 8999999987644
No 47
>COG2039 Pcp Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) [Posttranslational modification, protein turnover, chaperones]
Probab=85.10 E-value=2.7 Score=33.74 Aligned_cols=51 Identities=20% Similarity=0.148 Sum_probs=36.5
Q ss_pred CCEeEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeeeCccCCCCCCcccEE
Q 029435 56 KDLHLNIIWPGKDTSLEVDSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVF 117 (193)
Q Consensus 56 ~~~~v~~~~~G~~~~~~~~~iG~v~Aa~~~~~li~~~~~~~vi~~G~aG~l~~~~~~iGDvv 117 (193)
.+.+|.-.+.. .---.+..++++.|++++|+++|++|-|||-. ++.+--|-
T Consensus 32 ~g~~V~~~~lP---------~~f~~s~~~l~~~i~~~qPd~vl~iG~A~GR~--~iT~ERVA 82 (207)
T COG2039 32 GGAEVKGRILP---------VVFKKSIDALVQAIAEVQPDLVLAIGQAGGRT--KITPERVA 82 (207)
T ss_pred cCceEEEEEcC---------ccHHHHHHHHHHHHHhhCCCeEEEecccCCCC--cCChhhee
Confidence 44455555544 33345777888899999999999999999975 55555443
No 48
>PF01470 Peptidase_C15: Pyroglutamyl peptidase This is family C15 in the peptidase classification. ; InterPro: IPR000816 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C15 (pyroglutamyl peptidase I, clan CF). The type example being pyroglutamyl peptidase I of Bacillus amyloliquefaciens. Pyroglutamyl/pyrrolidone carboxyl peptidase (Pcp or PYRase) is an exopeptidase that hydrolytically removes the pGlu from pGlu-peptides or pGlu-proteins [, ]. PYRase has been found in prokaryotes and eukaryotes where at least two different classes have been characterised: the first containing bacterial and animal type I PYRases, and the second containing animal type II and serum PYRases. Type I and bacterial PYRases are soluble enzymes, while type II PYRases are membrane-bound. The primary application of PYRase has been its utilisation for protein or peptide sequencing, and bacterial diagnosis []. The conserved residues Cys-144 and His-168 have been identified by inhibition and mutagenesis studies [, ].; GO: 0006508 proteolysis; PDB: 1A2Z_A 1IU8_A 3RNZ_A 3RO0_D 1AUG_D 2EBJ_A 3LAC_A 1X12_B 1Z8X_B 1X10_C ....
Probab=83.33 E-value=5.1 Score=32.17 Aligned_cols=32 Identities=34% Similarity=0.416 Sum_probs=22.5
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEEEeeeCccC
Q 029435 76 VGTISASLVTYASIQALKPDLIINAGTAGGFK 107 (193)
Q Consensus 76 iG~v~Aa~~~~~li~~~~~~~vi~~G~aG~l~ 107 (193)
+---.+...+..++++++||+||.+|.+|+-+
T Consensus 43 V~~~~~~~~l~~~l~~~~PdlVIhlGva~~~~ 74 (202)
T PF01470_consen 43 VSYEKAFEALEELLEEHQPDLVIHLGVAGGRK 74 (202)
T ss_dssp SSHHHHHHHHHHHHHHH--SEEEEEEE-TT-S
T ss_pred CchHhHHHHHHHHHHhcCCcEEEEEeecCCcc
Confidence 44445666778889999999999999999876
No 49
>PRK13195 pyrrolidone-carboxylate peptidase; Provisional
Probab=80.69 E-value=3.6 Score=33.75 Aligned_cols=34 Identities=18% Similarity=0.276 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhCCCEEEEEeeeCccCCCCCCcccE
Q 029435 81 ASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDV 116 (193)
Q Consensus 81 Aa~~~~~li~~~~~~~vi~~G~aG~l~~~~~~iGDv 116 (193)
+...+..++++++||.||.+|.+||-+ .+.+--+
T Consensus 49 ~~~~l~~~i~~~~Pd~Vi~~G~a~gr~--~itlErv 82 (222)
T PRK13195 49 SIAAAQQAIAEIEPALVIMLGEYPGRS--MITVERL 82 (222)
T ss_pred HHHHHHHHHHHHCCCEEEEeCccCCcC--ceEeEEE
Confidence 555778889999999999999999986 4555443
No 50
>PRK13196 pyrrolidone-carboxylate peptidase; Provisional
Probab=79.66 E-value=5.1 Score=32.50 Aligned_cols=29 Identities=21% Similarity=0.269 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEeeeCccC
Q 029435 79 ISASLVTYASIQALKPDLIINAGTAGGFK 107 (193)
Q Consensus 79 v~Aa~~~~~li~~~~~~~vi~~G~aG~l~ 107 (193)
-.+...+..++++++||.||++|.+||-+
T Consensus 47 ~~~~~~l~~~~~~~~Pd~vi~~G~a~gr~ 75 (211)
T PRK13196 47 RAAMAALSRLLDELQPSAVLLTGLAAGRP 75 (211)
T ss_pred hHHHHHHHHHHHHhCCCEEEEecccCCcC
Confidence 34556788889999999999999999976
No 51
>PRK13194 pyrrolidone-carboxylate peptidase; Provisional
Probab=75.63 E-value=8.3 Score=31.25 Aligned_cols=32 Identities=31% Similarity=0.333 Sum_probs=25.4
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEEEeeeCccC
Q 029435 76 VGTISASLVTYASIQALKPDLIINAGTAGGFK 107 (193)
Q Consensus 76 iG~v~Aa~~~~~li~~~~~~~vi~~G~aG~l~ 107 (193)
+---.+.-.+..++++++|+.||.+|.+|+-+
T Consensus 43 V~~~~~~~~l~~~l~~~~Pd~vlhlG~a~~r~ 74 (208)
T PRK13194 43 VSFKRAREELEKVLDEIKPDITINLGLAPGRT 74 (208)
T ss_pred CchHhHHHHHHHHHHHhCCCEEEEeeccCCcc
Confidence 33334566677888889999999999999976
No 52
>PRK13193 pyrrolidone-carboxylate peptidase; Provisional
Probab=75.17 E-value=8.7 Score=31.15 Aligned_cols=32 Identities=25% Similarity=0.270 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEEEeeeCccC
Q 029435 76 VGTISASLVTYASIQALKPDLIINAGTAGGFK 107 (193)
Q Consensus 76 iG~v~Aa~~~~~li~~~~~~~vi~~G~aG~l~ 107 (193)
+=--.+...+..++++++||.||.+|.+|+-+
T Consensus 43 v~~~~~~~~l~~~~~~~~Pd~vl~~G~a~~r~ 74 (209)
T PRK13193 43 VEYEKIEDLIVTKIREMKPILTLGIGVAPGRA 74 (209)
T ss_pred CcHHHHHHHHHHHHHHHCCCEEEEecccCCcC
Confidence 33334666777888999999999999999976
No 53
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=67.36 E-value=20 Score=29.95 Aligned_cols=43 Identities=16% Similarity=0.284 Sum_probs=37.2
Q ss_pred eEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeeeCccCC
Q 029435 59 HLNIIWPGKDTSLEVDSVGTISASLVTYASIQALKPDLIINAGTAGGFKA 108 (193)
Q Consensus 59 ~v~~~~~G~~~~~~~~~iG~v~Aa~~~~~li~~~~~~~vi~~G~aG~l~~ 108 (193)
.+-++.|| ..||+-.+...+..+++.|+||.+|.++--+++..
T Consensus 33 ~vrv~gsG-------aKm~pe~~~~~~~~~~~~~~pDf~i~isPN~a~PG 75 (277)
T PRK00994 33 DVRVVGSG-------AKMGPEEVEEVVKKMLEEWKPDFVIVISPNPAAPG 75 (277)
T ss_pred eEEEeccC-------CCCCHHHHHHHHHHHHHhhCCCEEEEECCCCCCCC
Confidence 36667788 66999999999999999999999999999888863
No 54
>TIGR00504 pyro_pdase pyroglutamyl-peptidase I. Alternate names include pyroglutamate aminopeptidase, pyrrolidone-carboxylate peptidase, and 5-oxoprolyl-peptidase. It removes pyroglutamate (pyrrolidone-carboxylate, a modified glutamine) that can otherwise block hydrolysis of a polypeptide at the amino end, and so can be extremely useful in the biochemical studies of proteins. The biological role in the various species in which it is found is not fully understood. The enzyme appears to be a homodimer. It does not closely resemble any other peptidases.
Probab=66.27 E-value=17 Score=29.41 Aligned_cols=28 Identities=29% Similarity=0.398 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeeeCccC
Q 029435 80 SASLVTYASIQALKPDLIINAGTAGGFK 107 (193)
Q Consensus 80 ~Aa~~~~~li~~~~~~~vi~~G~aG~l~ 107 (193)
.+.-.+..++++++||.||.+|.+|+-+
T Consensus 45 ~~~~~l~~~l~~~~Pd~vi~~G~a~g~~ 72 (212)
T TIGR00504 45 EAIEALQQAIDEIEPDIVIMLGLAPGRS 72 (212)
T ss_pred HHHHHHHHHHHHHCCCEEEEeccCCCcC
Confidence 4455677888889999999999999875
No 55
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=62.02 E-value=10 Score=32.13 Aligned_cols=33 Identities=9% Similarity=0.190 Sum_probs=26.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEee
Q 029435 69 TSLEVDSVGTISASLVTYASIQALKPDLIINAGT 102 (193)
Q Consensus 69 ~~~~~~~iG~v~Aa~~~~~li~~~~~~~vi~~G~ 102 (193)
+.|+++||||--.+.-+..++.+.+ +.|+.+|.
T Consensus 4 AiYGKGGIGKST~~~Nlsaala~~G-~kVl~iGC 36 (273)
T PF00142_consen 4 AIYGKGGIGKSTTASNLSAALAEMG-KKVLQIGC 36 (273)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHTT---EEEEEE
T ss_pred EEEcCCCcccChhhhHHHHHHHhcc-ceeeEecc
Confidence 3588999999988888888888767 78888886
No 56
>PRK13197 pyrrolidone-carboxylate peptidase; Provisional
Probab=60.81 E-value=24 Score=28.61 Aligned_cols=28 Identities=32% Similarity=0.528 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeeeCccC
Q 029435 80 SASLVTYASIQALKPDLIINAGTAGGFK 107 (193)
Q Consensus 80 ~Aa~~~~~li~~~~~~~vi~~G~aG~l~ 107 (193)
.+.-.+..++.+++||+||.+|.+|+-+
T Consensus 48 ~~~~~l~~~l~~~~Pd~vih~G~a~~~~ 75 (215)
T PRK13197 48 KSAEVLKEAIEEVQPDAVICIGQAGGRT 75 (215)
T ss_pred HHHHHHHHHHHHhCCCEEEEeccCCCCC
Confidence 3455556778888999999999999876
No 57
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=58.44 E-value=33 Score=30.48 Aligned_cols=103 Identities=24% Similarity=0.272 Sum_probs=57.0
Q ss_pred CceEEEEeecHHHH---HHHHHhccccccCCCCCCCCCCeEEEEEEECCEe---EEEEecCCC-CCC--CC----CCCCH
Q 029435 12 ISSVVIIIAMQTEA---MPLVNKFELKEDQDSVFPEGVPWVRYHGTYKDLH---LNIIWPGKD-TSL--EV----DSVGT 78 (193)
Q Consensus 12 ~~~i~Ii~A~~~E~---~~l~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~---v~~~~~G~~-~~~--~~----~~iG~ 78 (193)
+++|++|++++.|+ .++++.+..... .....+.+|...+++ .++-..++. |-| +. +..|.
T Consensus 3 ~~Kv~~I~GTRPE~iKmapli~~~~~~~~-------~~~~vi~TGQH~d~em~~~~le~~~i~~pdy~L~i~~~~~tl~~ 75 (383)
T COG0381 3 MLKVLTIFGTRPEAIKMAPLVKALEKDPD-------FELIVIHTGQHRDYEMLDQVLELFGIRKPDYDLNIMKPGQTLGE 75 (383)
T ss_pred ceEEEEEEecCHHHHHHhHHHHHHHhCCC-------CceEEEEecccccHHHHHHHHHHhCCCCCCcchhccccCCCHHH
Confidence 57899999999996 455666555432 223555555544211 111112222 333 11 22333
Q ss_pred H--HHHHHHHHHHHHhCCCEEEEEe-----eeCccCC--CCCCcccEEEecc
Q 029435 79 I--SASLVTYASIQALKPDLIINAG-----TAGGFKA--KGASIGDVFLISD 121 (193)
Q Consensus 79 v--~Aa~~~~~li~~~~~~~vi~~G-----~aG~l~~--~~~~iGDvvi~~~ 121 (193)
+ ++-..+..++++.+||.|+.-| .||++-. ..+.+|.+=-+..
T Consensus 76 ~t~~~i~~~~~vl~~~kPD~VlVhGDT~t~lA~alaa~~~~IpV~HvEAGlR 127 (383)
T COG0381 76 ITGNIIEGLSKVLEEEKPDLVLVHGDTNTTLAGALAAFYLKIPVGHVEAGLR 127 (383)
T ss_pred HHHHHHHHHHHHHHhhCCCEEEEeCCcchHHHHHHHHHHhCCceEEEecccc
Confidence 3 3344566788899999999988 4444421 4566666554444
No 58
>cd00501 Peptidase_C15 Pyroglutamyl peptidase (PGP) type I, also known as pyrrolidone carboxyl peptidase (pcp) type I: Enzymes responsible for cleaving pyroglutamate (pGlu) from the N-terminal end of specialized proteins. The N-terminal pGlu protects these proteins from proteolysis by other proteases until the pGlu is removed by a PGP. PGPs are cysteine proteases with a Cys-His-Glu/Asp catalytic triad. Type I PGPs are found in a wide variety of prokaryotes and eukaryotes. It is not clear whether the functional form is a monomer, a homodimer, or a homotetramer.
Probab=58.14 E-value=32 Score=27.14 Aligned_cols=28 Identities=43% Similarity=0.538 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeeeCccC
Q 029435 80 SASLVTYASIQALKPDLIINAGTAGGFK 107 (193)
Q Consensus 80 ~Aa~~~~~li~~~~~~~vi~~G~aG~l~ 107 (193)
.+...+.+++++++|+++|.+|.+|+-+
T Consensus 47 ~~~~~~~~~~~~~~pd~vlhlG~~~~~~ 74 (194)
T cd00501 47 KAVEVLPELIEEHKPDLVIHVGLAGGRS 74 (194)
T ss_pred HHHHHHHHHHHHhCCCEEEEecccCCCC
Confidence 3445577888899999999999999875
No 59
>PRK13236 nitrogenase reductase; Reviewed
Probab=55.80 E-value=14 Score=31.16 Aligned_cols=27 Identities=19% Similarity=0.300 Sum_probs=22.8
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEEE
Q 029435 73 VDSVGTISASLVTYASIQALKPDLIIN 99 (193)
Q Consensus 73 ~~~iG~v~Aa~~~~~li~~~~~~~vi~ 99 (193)
|+|+||...+..+...+.+.+-+.++.
T Consensus 14 KGGVGKTt~a~NLA~~La~~G~rVLli 40 (296)
T PRK13236 14 KGGIGKSTTSQNTLAAMAEMGQRILIV 40 (296)
T ss_pred CCcCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 889999999999998898877776554
No 60
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=55.16 E-value=15 Score=31.73 Aligned_cols=34 Identities=15% Similarity=0.202 Sum_probs=19.3
Q ss_pred CCCCCHHHHHHHHHHHHHHhCC-CEEEEEeeeCcc
Q 029435 73 VDSVGTISASLVTYASIQALKP-DLIINAGTAGGF 106 (193)
Q Consensus 73 ~~~iG~v~Aa~~~~~li~~~~~-~~vi~~G~aG~l 106 (193)
++|+||...|+|+...+++.+= -+++++--|.+|
T Consensus 10 KGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhsL 44 (322)
T COG0003 10 KGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHSL 44 (322)
T ss_pred CCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCch
Confidence 8889996666665555555552 233444334433
No 61
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=54.70 E-value=35 Score=28.03 Aligned_cols=43 Identities=9% Similarity=0.251 Sum_probs=34.0
Q ss_pred EeEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeeeCccC
Q 029435 58 LHLNIIWPGKDTSLEVDSVGTISASLVTYASIQALKPDLIINAGTAGGFK 107 (193)
Q Consensus 58 ~~v~~~~~G~~~~~~~~~iG~v~Aa~~~~~li~~~~~~~vi~~G~aG~l~ 107 (193)
-.|-++.|| ..|++-..-.++...++.|+||.||.+|---+..
T Consensus 32 i~vrVvgsg-------aKM~Pe~veaav~~~~e~~~pDfvi~isPNpaaP 74 (277)
T COG1927 32 IEVRVVGSG-------AKMDPECVEAAVTEMLEEFNPDFVIYISPNPAAP 74 (277)
T ss_pred ceEEEeccc-------cccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Confidence 346677777 5588887777888999999999999998766654
No 62
>PRK06455 riboflavin synthase; Provisional
Probab=49.47 E-value=95 Score=24.05 Aligned_cols=32 Identities=16% Similarity=0.213 Sum_probs=26.5
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEEEeeeCccC
Q 029435 76 VGTISASLVTYASIQALKPDLIINAGTAGGFK 107 (193)
Q Consensus 76 iG~v~Aa~~~~~li~~~~~~~vi~~G~aG~l~ 107 (193)
-|.-.--.++.+|++.-++|.||-+|.-|.-.
T Consensus 39 PGa~ELP~aakkL~~~~~yDaVIaLG~VG~t~ 70 (155)
T PRK06455 39 PGIKDLPVAAKKLIEEEGCDIVMALGMPGPTE 70 (155)
T ss_pred CCHHHHHHHHHHHHhcCCCCEEEEecceeccC
Confidence 46677888888999877899999999986654
No 63
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=47.57 E-value=23 Score=29.91 Aligned_cols=28 Identities=7% Similarity=0.081 Sum_probs=22.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCEE
Q 029435 70 SLEVDSVGTISASLVTYASIQALKPDLI 97 (193)
Q Consensus 70 ~~~~~~iG~v~Aa~~~~~li~~~~~~~v 97 (193)
+|+|+|+||...+..+...+.+.+-+.+
T Consensus 5 ~~gKGGVGKTTta~nLA~~La~~G~rVL 32 (290)
T CHL00072 5 VYGKGGIGKSTTSCNISIALARRGKKVL 32 (290)
T ss_pred EECCCCCcHHHHHHHHHHHHHHCCCeEE
Confidence 4668899999999999988988777643
No 64
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=46.06 E-value=26 Score=29.93 Aligned_cols=38 Identities=13% Similarity=0.156 Sum_probs=25.5
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEEEEeeeCccCCCCCCcccE
Q 029435 73 VDSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDV 116 (193)
Q Consensus 73 ~~~iG~v~Aa~~~~~li~~~~~~~vi~~G~aG~l~~~~~~iGDv 116 (193)
++|+||...|+++...+.+-+-+.++. +.+ |.-+++|+
T Consensus 9 KGGVGKTT~aaA~A~~~A~~G~rtLlv-----S~D-pa~~L~d~ 46 (305)
T PF02374_consen 9 KGGVGKTTVAAALALALARRGKRTLLV-----STD-PAHSLSDV 46 (305)
T ss_dssp STTSSHHHHHHHHHHHHHHTTS-EEEE-----ESS-TTTHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhhCCCCeeEe-----ecC-CCccHHHH
Confidence 678999998888887777766554443 455 55555553
No 65
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=43.90 E-value=30 Score=27.38 Aligned_cols=29 Identities=10% Similarity=0.134 Sum_probs=22.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCEEEE
Q 029435 71 LEVDSVGTISASLVTYASIQALKPDLIIN 99 (193)
Q Consensus 71 ~~~~~iG~v~Aa~~~~~li~~~~~~~vi~ 99 (193)
++|+|+||...+.-+...+.+.+-+.++.
T Consensus 6 ~gKGGvGKTt~~~nLA~~la~~G~rvLli 34 (212)
T cd02117 6 YGKGGIGKSTTSQNLSAALAEMGKKVLQV 34 (212)
T ss_pred ECCCcCcHHHHHHHHHHHHHHCCCcEEEE
Confidence 34889999998888888888877665443
No 66
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=41.42 E-value=87 Score=27.84 Aligned_cols=34 Identities=6% Similarity=-0.081 Sum_probs=24.8
Q ss_pred eEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCEEE
Q 029435 59 HLNIIWPGKDTSLEVDSVGTISASLVTYASIQALKPDLII 98 (193)
Q Consensus 59 ~v~~~~~G~~~~~~~~~iG~v~Aa~~~~~li~~~~~~~vi 98 (193)
+++.+... ++|+||...+..+...+...+-+.++
T Consensus 122 ~vIav~n~------KGGvGKTTta~nLA~~LA~~G~rVLl 155 (405)
T PRK13869 122 QVIAVTNF------KGGSGKTTTSAHLAQYLALQGYRVLA 155 (405)
T ss_pred eEEEEEcC------CCCCCHHHHHHHHHHHHHhcCCceEE
Confidence 45555554 67899999888888888777766443
No 67
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=40.75 E-value=28 Score=29.21 Aligned_cols=33 Identities=15% Similarity=0.184 Sum_probs=26.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEee
Q 029435 69 TSLEVDSVGTISASLVTYASIQALKPDLIINAGT 102 (193)
Q Consensus 69 ~~~~~~~iG~v~Aa~~~~~li~~~~~~~vi~~G~ 102 (193)
+.|+++||||-..+.-+..++... =+.|+.+|.
T Consensus 5 AiYGKGGIGKSTts~N~aAAla~~-GkkVl~vGC 37 (278)
T COG1348 5 AIYGKGGIGKSTTSQNLAAALAEL-GKKVLIVGC 37 (278)
T ss_pred EEecCCCcCcchhHHHHHHHHHHc-CCeEEEEcC
Confidence 468899999998888888888776 456666775
No 68
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=40.60 E-value=34 Score=28.15 Aligned_cols=29 Identities=10% Similarity=0.200 Sum_probs=22.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCEEE
Q 029435 70 SLEVDSVGTISASLVTYASIQALKPDLII 98 (193)
Q Consensus 70 ~~~~~~iG~v~Aa~~~~~li~~~~~~~vi 98 (193)
+|+++|+||...+.-+...+.+.+-+.++
T Consensus 5 ~~gKGGVGKTT~a~nLA~~La~~G~~Vll 33 (275)
T TIGR01287 5 IYGKGGIGKSTTTQNIAAALAEMGKKVMI 33 (275)
T ss_pred EeCCCcCcHHHHHHHHHHHHHHCCCeEEE
Confidence 35688999999888888888877754433
No 69
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=38.89 E-value=34 Score=27.75 Aligned_cols=27 Identities=41% Similarity=0.495 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEeeeCc
Q 029435 79 ISASLVTYASIQALKPDLIINAGTAGG 105 (193)
Q Consensus 79 v~Aa~~~~~li~~~~~~~vi~~G~aG~ 105 (193)
+.=-.+.|+||-+.+|+.||=+|++-|
T Consensus 18 P~Dm~~~qeli~~~kPd~IIE~Gi~~G 44 (206)
T PF04989_consen 18 PQDMVAYQELIWELKPDLIIETGIAHG 44 (206)
T ss_dssp HHHHHHHHHHHHHH--SEEEEE--TTS
T ss_pred HHHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 355678899999999999999999865
No 70
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=38.49 E-value=51 Score=28.65 Aligned_cols=24 Identities=29% Similarity=0.492 Sum_probs=18.4
Q ss_pred HHHHHHHHHhCCCEEEEEe-e----eCcc
Q 029435 83 LVTYASIQALKPDLIINAG-T----AGGF 106 (193)
Q Consensus 83 ~~~~~li~~~~~~~vi~~G-~----aG~l 106 (193)
..+..++.+++||.|+..| . +|++
T Consensus 83 ~~~~~~~~~~~Pd~vlv~GD~~~~la~al 111 (365)
T TIGR03568 83 IGFSDAFERLKPDLVVVLGDRFEMLAAAI 111 (365)
T ss_pred HHHHHHHHHhCCCEEEEeCCchHHHHHHH
Confidence 4455677889999999999 5 5555
No 71
>COG1731 Archaeal riboflavin synthase [Coenzyme metabolism]
Probab=38.25 E-value=35 Score=25.85 Aligned_cols=28 Identities=18% Similarity=0.197 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeeeCccC
Q 029435 80 SASLVTYASIQALKPDLIINAGTAGGFK 107 (193)
Q Consensus 80 ~Aa~~~~~li~~~~~~~vi~~G~aG~l~ 107 (193)
.--.++-+||++-++|.||.+|.-|.-.
T Consensus 43 dlpvaakrLieeeGCd~Vi~lG~~G~t~ 70 (154)
T COG1731 43 DLPVAAKRLIEEEGCDIVIALGWVGPTE 70 (154)
T ss_pred cChHHHHHHHHhcCCcEEEEccCcCcch
Confidence 4556678999989999999999999876
No 72
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=38.08 E-value=40 Score=27.81 Aligned_cols=27 Identities=11% Similarity=0.251 Sum_probs=21.9
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEEE
Q 029435 73 VDSVGTISASLVTYASIQALKPDLIIN 99 (193)
Q Consensus 73 ~~~iG~v~Aa~~~~~li~~~~~~~vi~ 99 (193)
|+|+||...+.-+...+.+.+-+.++.
T Consensus 9 KGGVGKTT~~~nLA~~La~~G~rVLlI 35 (274)
T PRK13235 9 KGGIGKSTTTQNTVAGLAEMGKKVMVV 35 (274)
T ss_pred CCCccHHHHHHHHHHHHHHCCCcEEEE
Confidence 778999999999999888877664443
No 73
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=37.84 E-value=1.1e+02 Score=21.40 Aligned_cols=47 Identities=17% Similarity=0.110 Sum_probs=29.3
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEEEeeeCccCCCCCCcccEEEeccee
Q 029435 76 VGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVA 123 (193)
Q Consensus 76 iG~v~Aa~~~~~li~~~~~~~vi~~G~aG~l~~~~~~iGDvvi~~~~~ 123 (193)
++.--.+..+++.+++.+.+.=+.....+.+. ....--|+|+...=+
T Consensus 14 ~sSS~l~~k~~~~~~~~gi~~~v~a~~~~~~~-~~~~~~Dvill~pqi 60 (95)
T TIGR00853 14 MSTSLLVNKMNKAAEEYGVPVKIAAGSYGAAG-EKLDDADVVLLAPQV 60 (95)
T ss_pred hhHHHHHHHHHHHHHHCCCcEEEEEecHHHHH-hhcCCCCEEEECchH
Confidence 66544455555667777888766666655565 344455888776533
No 74
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=37.65 E-value=72 Score=27.33 Aligned_cols=41 Identities=15% Similarity=0.276 Sum_probs=31.2
Q ss_pred EeEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHHhCCC-EEEEEeeeC
Q 029435 58 LHLNIIWPGKDTSLEVDSVGTISASLVTYASIQALKPD-LIINAGTAG 104 (193)
Q Consensus 58 ~~v~~~~~G~~~~~~~~~iG~v~Aa~~~~~li~~~~~~-~vi~~G~aG 104 (193)
++++++.+| ++|+||-..+.-+...+.+.+.+ .++=+-+||
T Consensus 47 k~iI~VlSG------KGGVGKSTvt~nla~~La~~g~~vglLD~Dl~G 88 (300)
T KOG3022|consen 47 KHIILVLSG------KGGVGKSTVTVNLALALASEGKKVGLLDADLCG 88 (300)
T ss_pred ceEEEEEeC------CCCCchhHHHHHHHHHHhcCCCcEEEEeecccC
Confidence 578999999 99999988888777777765554 455566666
No 75
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=37.56 E-value=38 Score=26.17 Aligned_cols=44 Identities=18% Similarity=0.061 Sum_probs=34.5
Q ss_pred ECCEeEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeeeCccC
Q 029435 55 YKDLHLNIIWPGKDTSLEVDSVGTISASLVTYASIQALKPDLIINAGTAGGFK 107 (193)
Q Consensus 55 ~~~~~v~~~~~G~~~~~~~~~iG~v~Aa~~~~~li~~~~~~~vi~~G~aG~l~ 107 (193)
+.+.+++++-.+ +=+-.+.--+.++|.+.+.+.|..+|++|+..
T Consensus 37 ~~~yD~i~lG~w---------~d~G~~d~~~~~fl~~l~~KkV~lF~T~G~~~ 80 (160)
T PF12641_consen 37 LEDYDLIFLGFW---------IDKGTPDKDMKEFLKKLKGKKVALFGTAGAGP 80 (160)
T ss_pred CCCCCEEEEEcC---------ccCCCCCHHHHHHHHHccCCeEEEEEecCCCC
Confidence 456788888887 43334556677889999999999999999974
No 76
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=36.29 E-value=47 Score=25.66 Aligned_cols=23 Identities=0% Similarity=0.024 Sum_probs=19.0
Q ss_pred ceEEEEeecHHHHHHHHHhcccc
Q 029435 13 SSVVIIIAMQTEAMPLVNKFELK 35 (193)
Q Consensus 13 ~~i~Ii~A~~~E~~~l~~~l~~~ 35 (193)
.+|.++.+.++.++.+.+.|...
T Consensus 49 ~~ifllG~~~~~~~~~~~~l~~~ 71 (172)
T PF03808_consen 49 KRIFLLGGSEEVLEKAAANLRRR 71 (172)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHH
Confidence 57999999999999888877654
No 77
>TIGR01957 nuoB_fam NADH-quinone oxidoreductase, B subunit. This model describes the B chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. The quinone is plastoquinone in Synechocystis (where the chain is designated K) and in chloroplast, where NADH may be replaced by NADPH. In the methanogenic archaeal genus Methanosarcina, NADH is replaced by F420H2.
Probab=35.91 E-value=91 Score=23.83 Aligned_cols=44 Identities=16% Similarity=0.262 Sum_probs=29.3
Q ss_pred EECCEeEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeee---CccC
Q 029435 54 TYKDLHLNIIWPGKDTSLEVDSVGTISASLVTYASIQAL-KPDLIINAGTA---GGFK 107 (193)
Q Consensus 54 ~~~~~~v~~~~~G~~~~~~~~~iG~v~Aa~~~~~li~~~-~~~~vi~~G~a---G~l~ 107 (193)
.-++-++.++... +-. +.+-.+.++.++. +|+.||.+|.| ||+-
T Consensus 54 sPr~aDvllVtG~---------vt~-~~~~~l~~~~e~~p~pk~VIA~GsCA~~GGi~ 101 (145)
T TIGR01957 54 SPRQADVMIVAGT---------VTK-KMAPALRRLYDQMPEPKWVISMGACANSGGMF 101 (145)
T ss_pred CCCcceEEEEecC---------CcH-HHHHHHHHHHHhccCCceEEEecceeecCCCc
Confidence 3344567777655 554 4566666666543 79999999999 5553
No 78
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=35.76 E-value=1.6e+02 Score=26.05 Aligned_cols=34 Identities=9% Similarity=0.007 Sum_probs=24.5
Q ss_pred eEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCEEE
Q 029435 59 HLNIIWPGKDTSLEVDSVGTISASLVTYASIQALKPDLII 98 (193)
Q Consensus 59 ~v~~~~~G~~~~~~~~~iG~v~Aa~~~~~li~~~~~~~vi 98 (193)
.++.+... |+|+||...+..+...+...+.+.++
T Consensus 107 ~vIav~n~------KGGVGKTTta~nLA~~LA~~G~rVLl 140 (387)
T PHA02519 107 VVLAVMSH------KGGVYKTSSAVHTAQWLALQGHRVLL 140 (387)
T ss_pred eEEEEecC------CCCCcHHHHHHHHHHHHHhCCCcEEE
Confidence 45555554 78899999888888888777765443
No 79
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=35.33 E-value=70 Score=26.70 Aligned_cols=49 Identities=12% Similarity=0.165 Sum_probs=33.2
Q ss_pred eEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeeeCccCCCCCCcccEEEe
Q 029435 59 HLNIIWPGKDTSLEVDSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLI 119 (193)
Q Consensus 59 ~v~~~~~G~~~~~~~~~iG~v~Aa~~~~~li~~~~~~~vi~~G~aG~l~~~~~~iGDvvi~ 119 (193)
+++++.+| ++|+||.-.++.....+.+.+- .++.+-+==||+ --|++..
T Consensus 3 ~iIVvTSG------KGGVGKTTttAnig~aLA~~Gk-Kv~liD~DiGLR-----NLDlimG 51 (272)
T COG2894 3 RIIVVTSG------KGGVGKTTTTANIGTALAQLGK-KVVLIDFDIGLR-----NLDLIMG 51 (272)
T ss_pred eEEEEecC------CCCcCccchhHHHHHHHHHcCC-eEEEEecCcCch-----hhhhhhc
Confidence 47788888 9999999888777777766554 444555544554 3355555
No 80
>PF14492 EFG_II: Elongation Factor G, domain II; PDB: 1WDT_A 2DY1_A 2XEX_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y 2XUY_Y 3J0E_H ....
Probab=34.65 E-value=1.4e+02 Score=19.73 Aligned_cols=70 Identities=11% Similarity=0.124 Sum_probs=47.9
Q ss_pred CCceEEEEeecHHHHHHHHHhccccccCCCCCCCCCCeEEEEEEECCEeEEEEecCCCCCCCCCCCCHHHHHHHHHHHHH
Q 029435 11 AISSVVIIIAMQTEAMPLVNKFELKEDQDSVFPEGVPWVRYHGTYKDLHLNIIWPGKDTSLEVDSVGTISASLVTYASIQ 90 (193)
Q Consensus 11 ~~~~i~Ii~A~~~E~~~l~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~~~G~~~~~~~~~iG~v~Aa~~~~~li~ 90 (193)
++..+.|....+.+...+.+.|......++ ...++.- -...+ ++.+| +|.+.-.++.+.|-+
T Consensus 4 Pv~~~~i~p~~~~d~~kl~~aL~~l~~eDP------~l~~~~d-~et~e--~~l~g---------~Gelhlev~~~~L~~ 65 (75)
T PF14492_consen 4 PVLSVAIEPKNKEDEPKLSEALQKLSEEDP------SLRVERD-EETGE--LILSG---------MGELHLEVLLERLKR 65 (75)
T ss_dssp -SEEEEEEESSHHHHHHHHHHHHHHHHH-T------TSEEEEE-TTTSE--EEEEE---------SSHHHHHHHHHHHHH
T ss_pred CeEEEEEEECCHhHHHHHHHHHHHHHhcCC------eEEEEEc-chhce--EEEEE---------CCHHHHHHHHHHHHH
Confidence 456788888889898888888876655442 2333321 12233 33556 999999999999999
Q ss_pred HhCCCEEE
Q 029435 91 ALKPDLII 98 (193)
Q Consensus 91 ~~~~~~vi 98 (193)
+|+++.-+
T Consensus 66 ~~~v~v~~ 73 (75)
T PF14492_consen 66 RFGVEVEF 73 (75)
T ss_dssp TTCEBEEE
T ss_pred HHCCeeEe
Confidence 99887543
No 81
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=33.02 E-value=1.3e+02 Score=25.33 Aligned_cols=44 Identities=16% Similarity=0.328 Sum_probs=30.0
Q ss_pred CEeEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeeeCccC
Q 029435 57 DLHLNIIWPGKDTSLEVDSVGTISASLVTYASIQALKPDLIINAGTAGGFK 107 (193)
Q Consensus 57 ~~~v~~~~~G~~~~~~~~~iG~v~Aa~~~~~li~~~~~~~vi~~G~aG~l~ 107 (193)
+-++-++.|| ..|++-..-.++...+..|+||++|.++--+++.
T Consensus 30 dI~vrv~gsG-------aKm~pe~~e~~~~~~~~~~~pdf~I~isPN~~~P 73 (276)
T PF01993_consen 30 DIDVRVVGSG-------AKMGPEDVEEVVTKMLKEWDPDFVIVISPNAAAP 73 (276)
T ss_dssp SEEEEEEEEE-------T--SHHHHHHHHHHHHHHH--SEEEEE-S-TTSH
T ss_pred CceEEEeccC-------CCCCHHHHHHHHHHHHHhhCCCEEEEECCCCCCC
Confidence 3445666777 5699988877888888899999999999888875
No 82
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=32.56 E-value=72 Score=26.84 Aligned_cols=44 Identities=14% Similarity=0.188 Sum_probs=35.4
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEEEeeeCccCCCCCCcccEEEe
Q 029435 76 VGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLI 119 (193)
Q Consensus 76 iG~v~Aa~~~~~li~~~~~~~vi~~G~aG~l~~~~~~iGDvvi~ 119 (193)
++.+.+-..+.+.+.+.++..|..-|.+|-++|..++++|+.=.
T Consensus 129 iD~~~~k~~L~~~c~~~~ip~I~~gGag~k~dp~~~~~~di~~t 172 (268)
T PRK15116 129 IDSVRPKAALIAYCRRNKIPLVTTGGAGGQIDPTQIQVVDLAKT 172 (268)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCcccCCCCCeEEEEeeecc
Confidence 66777888888888888999988888888888656889997644
No 83
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=31.57 E-value=58 Score=27.57 Aligned_cols=30 Identities=7% Similarity=0.079 Sum_probs=22.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCEEEEEee
Q 029435 72 EVDSVGTISASLVTYASIQALKPDLIINAGT 102 (193)
Q Consensus 72 ~~~~iG~v~Aa~~~~~li~~~~~~~vi~~G~ 102 (193)
+|+|+||...|..+...+.+.+-+ |+.++.
T Consensus 7 gKGGvGKTT~a~nLA~~La~~g~r-VLlID~ 36 (296)
T TIGR02016 7 GKGGSGKSFTTTNLSHMMAEMGKR-VLQLGC 36 (296)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCe-EEEEEe
Confidence 378899999999999888876654 444443
No 84
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=31.42 E-value=1.1e+02 Score=25.08 Aligned_cols=27 Identities=7% Similarity=0.224 Sum_probs=22.5
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEEE
Q 029435 73 VDSVGTISASLVTYASIQALKPDLIIN 99 (193)
Q Consensus 73 ~~~iG~v~Aa~~~~~li~~~~~~~vi~ 99 (193)
|+|+||...+.-+...+.+.+-+.++.
T Consensus 9 KGGVGKTT~a~nLA~~La~~G~rVllv 35 (273)
T PRK13232 9 KGGIGKSTTTQNLTAALSTMGNKILLV 35 (273)
T ss_pred CCCCcHHHHHHHHHHHHHhhCCCeEEE
Confidence 788999999999888888877776555
No 85
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=31.14 E-value=62 Score=26.48 Aligned_cols=27 Identities=7% Similarity=0.070 Sum_probs=20.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCEEE
Q 029435 72 EVDSVGTISASLVTYASIQALKPDLII 98 (193)
Q Consensus 72 ~~~~iG~v~Aa~~~~~li~~~~~~~vi 98 (193)
+|+|+||...+..+...+.+.+-+.++
T Consensus 7 gKGGvGKTT~a~nLA~~la~~G~rvll 33 (267)
T cd02032 7 GKGGIGKSTTSSNLSVALAKRGKKVLQ 33 (267)
T ss_pred cCCCCCHHHHHHHHHHHHHHCCCcEEE
Confidence 388899999888888888876665443
No 86
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=31.12 E-value=59 Score=26.57 Aligned_cols=26 Identities=12% Similarity=0.143 Sum_probs=19.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCEE
Q 029435 72 EVDSVGTISASLVTYASIQALKPDLI 97 (193)
Q Consensus 72 ~~~~iG~v~Aa~~~~~li~~~~~~~v 97 (193)
+|+|+||...+.-+...+.+.+-+.+
T Consensus 7 gKGGVGKTT~~~nLA~~La~~g~rVL 32 (268)
T TIGR01281 7 GKGGIGKSTTSSNLSVAFAKLGKRVL 32 (268)
T ss_pred cCCcCcHHHHHHHHHHHHHhCCCeEE
Confidence 47889999988888877777666544
No 87
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=30.93 E-value=62 Score=26.73 Aligned_cols=27 Identities=7% Similarity=0.122 Sum_probs=21.5
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEEE
Q 029435 73 VDSVGTISASLVTYASIQALKPDLIIN 99 (193)
Q Consensus 73 ~~~iG~v~Aa~~~~~li~~~~~~~vi~ 99 (193)
++|+||...+..+...+.+.+-+.++.
T Consensus 9 KGGVGKTT~a~nLA~~La~~G~rVLli 35 (279)
T PRK13230 9 KGGIGKSTTVCNIAAALAESGKKVLVV 35 (279)
T ss_pred CCCCcHHHHHHHHHHHHHhCCCEEEEE
Confidence 788999999998888888877664443
No 88
>CHL00175 minD septum-site determining protein; Validated
Probab=30.59 E-value=1.3e+02 Score=24.85 Aligned_cols=34 Identities=21% Similarity=0.221 Sum_probs=24.9
Q ss_pred eEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCEEE
Q 029435 59 HLNIIWPGKDTSLEVDSVGTISASLVTYASIQALKPDLII 98 (193)
Q Consensus 59 ~v~~~~~G~~~~~~~~~iG~v~Aa~~~~~li~~~~~~~vi 98 (193)
+++.+.++ ++|+||...|..+..++.+.+-+.++
T Consensus 16 ~vi~v~s~------KGGvGKTt~a~nLA~~La~~g~~vll 49 (281)
T CHL00175 16 RIIVITSG------KGGVGKTTTTANLGMSIARLGYRVAL 49 (281)
T ss_pred eEEEEEcC------CCCCcHHHHHHHHHHHHHhCCCeEEE
Confidence 35666665 78899999888888888877755433
No 89
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=29.84 E-value=1.5e+02 Score=24.84 Aligned_cols=34 Identities=18% Similarity=0.222 Sum_probs=24.9
Q ss_pred EEEEecCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEE
Q 029435 60 LNIIWPGKDTSLEVDSVGTISASLVTYASIQALKPDLIIN 99 (193)
Q Consensus 60 v~~~~~G~~~~~~~~~iG~v~Aa~~~~~li~~~~~~~vi~ 99 (193)
++.+.+| ++|+||.+-+..+..++.+.+-+.|+.
T Consensus 4 ~Iav~Sg------KGGvGKTtitanlga~~~~~~~k~V~~ 37 (262)
T COG0455 4 VIAVVSG------KGGVGKTTITANLGAALAALGGKVVLL 37 (262)
T ss_pred EEEEEec------CCCccHHHHHHhHHHHHHhhCCCeEEE
Confidence 5556666 889999999999965555667766443
No 90
>PRK10818 cell division inhibitor MinD; Provisional
Probab=29.66 E-value=1.3e+02 Score=24.42 Aligned_cols=23 Identities=13% Similarity=0.137 Sum_probs=19.1
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCC
Q 029435 73 VDSVGTISASLVTYASIQALKPD 95 (193)
Q Consensus 73 ~~~iG~v~Aa~~~~~li~~~~~~ 95 (193)
++|+||...+..+...+.+.+.+
T Consensus 11 KGGvGKTt~a~nlA~~la~~g~~ 33 (270)
T PRK10818 11 KGGVGKTTSSAAIATGLAQKGKK 33 (270)
T ss_pred CCCCcHHHHHHHHHHHHHHCCCe
Confidence 67899999999999888777744
No 91
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=29.42 E-value=2.6e+02 Score=21.43 Aligned_cols=23 Identities=9% Similarity=0.056 Sum_probs=18.9
Q ss_pred ceEEEEeecHHHHHHHHHhcccc
Q 029435 13 SSVVIIIAMQTEAMPLVNKFELK 35 (193)
Q Consensus 13 ~~i~Ii~A~~~E~~~l~~~l~~~ 35 (193)
.+|.++.+.+++++.+.+++...
T Consensus 47 ~~v~llG~~~~~~~~~~~~l~~~ 69 (171)
T cd06533 47 LRVFLLGAKPEVLEKAAERLRAR 69 (171)
T ss_pred CeEEEECCCHHHHHHHHHHHHHH
Confidence 67999999999999887776543
No 92
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=29.28 E-value=79 Score=21.05 Aligned_cols=49 Identities=16% Similarity=0.143 Sum_probs=30.2
Q ss_pred CCHHHHH-HHHHHHHHHhCCCEEEEEeeeCccCCCCCCcccEEEecceeEe
Q 029435 76 VGTISAS-LVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFH 125 (193)
Q Consensus 76 iG~v~Aa-~~~~~li~~~~~~~vi~~G~aG~l~~~~~~iGDvvi~~~~~~~ 125 (193)
+|.-..+ ..+++.+.+.+.+.....+.-.... ....--|+++.+.-+.|
T Consensus 10 i~TS~~~~~~i~~~~~~~gi~~~~~~~~~~~~~-~~~~~~D~il~~~~i~~ 59 (90)
T PF02302_consen 10 IGTSLMVANKIKKALKELGIEVEVSAGSILEVE-EIADDADLILLTPQIAY 59 (90)
T ss_dssp SHHHHHHHHHHHHHHHHTTECEEEEEEETTTHH-HHHTT-SEEEEEESSGG
T ss_pred HHHHHHHHHHHHHHHHhccCceEEEEecccccc-cccCCCcEEEEcCccch
Confidence 8765555 6677888888988888777722222 22334688887665443
No 93
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=29.11 E-value=1.2e+02 Score=24.85 Aligned_cols=43 Identities=19% Similarity=0.264 Sum_probs=32.8
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEEEeeeCccCCCCCCcccEEE
Q 029435 76 VGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFL 118 (193)
Q Consensus 76 iG~v~Aa~~~~~li~~~~~~~vi~~G~aG~l~~~~~~iGDvvi 118 (193)
+....+-..+...+.++++..|-..|.+|-++|..+++.|+-=
T Consensus 110 iD~~~~k~~L~~~c~~~~ip~I~s~g~g~~~dp~~i~i~di~~ 152 (231)
T cd00755 110 IDSIRAKVALIAYCRKRKIPVISSMGAGGKLDPTRIRVADISK 152 (231)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEeCCcCCCCCCeEEEccEec
Confidence 5666777777788888888888887777778856678888753
No 94
>PRK11670 antiporter inner membrane protein; Provisional
Probab=28.22 E-value=1.5e+02 Score=26.10 Aligned_cols=33 Identities=15% Similarity=0.162 Sum_probs=26.3
Q ss_pred EeEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCE
Q 029435 58 LHLNIIWPGKDTSLEVDSVGTISASLVTYASIQALKPDL 96 (193)
Q Consensus 58 ~~v~~~~~G~~~~~~~~~iG~v~Aa~~~~~li~~~~~~~ 96 (193)
.+++.+.+| ++|+||...|.-+...+.+.+-+.
T Consensus 107 ~~vIaV~S~------KGGVGKTT~avNLA~aLA~~G~rV 139 (369)
T PRK11670 107 KNIIAVSSG------KGGVGKSSTAVNLALALAAEGAKV 139 (369)
T ss_pred CEEEEEeCC------CCCCCHHHHHHHHHHHHHHCCCcE
Confidence 467777777 999999999988888887766553
No 95
>PRK14818 NADH dehydrogenase subunit B; Provisional
Probab=28.11 E-value=97 Score=24.46 Aligned_cols=42 Identities=14% Similarity=0.261 Sum_probs=29.2
Q ss_pred EEEECCEeEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeee
Q 029435 52 HGTYKDLHLNIIWPGKDTSLEVDSVGTISASLVTYASIQAL-KPDLIINAGTA 103 (193)
Q Consensus 52 ~g~~~~~~v~~~~~G~~~~~~~~~iG~v~Aa~~~~~li~~~-~~~~vi~~G~a 103 (193)
++.-+.-++.++ +| --..+.+-.+.++.++- .|+.||.+|.|
T Consensus 65 ~aSPRhADvLlV-tG---------~vT~km~~~l~~~yeqmPePK~VIA~G~C 107 (173)
T PRK14818 65 RASPRQADFMIV-AG---------TLTYKMAERARLLYDQMPEPKYVISMGSC 107 (173)
T ss_pred cCCcccccEEEE-eC---------cCccccHHHHHHHHHhCCCCCEEEEeccc
Confidence 444445556555 44 45567777778877665 79999999988
No 96
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=27.97 E-value=1.6e+02 Score=23.57 Aligned_cols=26 Identities=12% Similarity=0.225 Sum_probs=19.5
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEE
Q 029435 73 VDSVGTISASLVTYASIQALKPDLII 98 (193)
Q Consensus 73 ~~~iG~v~Aa~~~~~li~~~~~~~vi 98 (193)
++|+||...+..+...+.+.+-+.++
T Consensus 10 kGGvGKTt~a~~lA~~la~~g~~vll 35 (261)
T TIGR01968 10 KGGVGKTTTTANLGTALARLGKKVVL 35 (261)
T ss_pred CCCccHHHHHHHHHHHHHHcCCeEEE
Confidence 67899998888888877776655443
No 97
>PRK14815 NADH dehydrogenase subunit B; Provisional
Probab=27.18 E-value=1.4e+02 Score=23.71 Aligned_cols=42 Identities=19% Similarity=0.343 Sum_probs=27.3
Q ss_pred CCEeEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeee---CccC
Q 029435 56 KDLHLNIIWPGKDTSLEVDSVGTISASLVTYASIQAL-KPDLIINAGTA---GGFK 107 (193)
Q Consensus 56 ~~~~v~~~~~G~~~~~~~~~iG~v~Aa~~~~~li~~~-~~~~vi~~G~a---G~l~ 107 (193)
+..++.++... +- .+.+-.+.++.+.- +|+.||.+|.| ||+.
T Consensus 72 R~ADillVtG~---------VT-~~m~~~l~r~ye~~p~pK~VIAvGsCA~~GGi~ 117 (183)
T PRK14815 72 RQADVMIVAGT---------VT-YKMALAVRRIYDQMPEPKWVIAMGACASSGGMY 117 (183)
T ss_pred ccccEEEEeCc---------Cc-hhhHHHHHHHHHhCCCCCEEEEeccccccCCCc
Confidence 34456665543 43 45556666666543 79999999999 6664
No 98
>COG0799 Uncharacterized homolog of plant Iojap protein [Function unknown]
Probab=26.55 E-value=90 Score=22.93 Aligned_cols=51 Identities=14% Similarity=0.112 Sum_probs=38.9
Q ss_pred eEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeeeCccCCCC---CCcccEEEe
Q 029435 59 HLNIIWPGKDTSLEVDSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKG---ASIGDVFLI 119 (193)
Q Consensus 59 ~v~~~~~G~~~~~~~~~iG~v~Aa~~~~~li~~~~~~~vi~~G~aG~l~~~~---~~iGDvvi~ 119 (193)
+..++.|| .+.....+.+..+..+.+.......++=|.-. .+ +..||+||=
T Consensus 35 DyfVIatg---------~s~rhv~Aiad~i~~~~k~~g~~~~~~EG~~~-~~WvliD~GdivVH 88 (115)
T COG0799 35 DYFVIATG---------NSSRHVKAIADNVKEELKEAGEVPLRIEGLSE-GEWVLIDLGDIVVH 88 (115)
T ss_pred cEEEEEEe---------CchHHHHHHHHHHHHHHHHcCCCcccccCCCc-CCEEEEecCcEEEE
Confidence 46778888 88888888888988888777777777777554 23 677888764
No 99
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=25.52 E-value=1.7e+02 Score=23.25 Aligned_cols=23 Identities=9% Similarity=0.069 Sum_probs=18.1
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCC
Q 029435 73 VDSVGTISASLVTYASIQALKPD 95 (193)
Q Consensus 73 ~~~iG~v~Aa~~~~~li~~~~~~ 95 (193)
++|+||...|..+...+.+.+-+
T Consensus 9 KGGvGKTt~a~~LA~~la~~g~~ 31 (251)
T TIGR01969 9 KGGTGKTTITANLGVALAKLGKK 31 (251)
T ss_pred CCCCcHHHHHHHHHHHHHHCCCe
Confidence 77899998888888877776644
No 100
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=25.43 E-value=84 Score=26.44 Aligned_cols=27 Identities=19% Similarity=0.298 Sum_probs=21.5
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEEE
Q 029435 73 VDSVGTISASLVTYASIQALKPDLIIN 99 (193)
Q Consensus 73 ~~~iG~v~Aa~~~~~li~~~~~~~vi~ 99 (193)
++|+||...+.-+...+.+.+-+.++.
T Consensus 12 KGGvGKTt~~~nLa~~la~~g~kVLli 38 (295)
T PRK13234 12 KGGIGKSTTSQNTLAALVEMGQKILIV 38 (295)
T ss_pred CCCccHHHHHHHHHHHHHHCCCeEEEE
Confidence 778999998888888888877765554
No 101
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=25.33 E-value=1.6e+02 Score=22.16 Aligned_cols=27 Identities=11% Similarity=0.069 Sum_probs=21.2
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEEE
Q 029435 73 VDSVGTISASLVTYASIQALKPDLIIN 99 (193)
Q Consensus 73 ~~~iG~v~Aa~~~~~li~~~~~~~vi~ 99 (193)
++|+||...|..+...+.+.+-+.++.
T Consensus 8 kgG~GKTt~a~~LA~~la~~g~~vllv 34 (169)
T cd02037 8 KGGVGKSTVAVNLALALAKLGYKVGLL 34 (169)
T ss_pred CCcCChhHHHHHHHHHHHHcCCcEEEE
Confidence 678999998888888887777665553
No 102
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=25.23 E-value=1.9e+02 Score=19.92 Aligned_cols=49 Identities=6% Similarity=-0.143 Sum_probs=26.4
Q ss_pred CCHHHH-HHHHHHHHHHhCCCEEEEEeeeCccCCCCCCcccEEEecceeEe
Q 029435 76 VGTISA-SLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFH 125 (193)
Q Consensus 76 iG~v~A-a~~~~~li~~~~~~~vi~~G~aG~l~~~~~~iGDvvi~~~~~~~ 125 (193)
+|.-.. +..++.++.+.+.+.=+....-..+. ..++--|+++.+.-+.+
T Consensus 13 ~~TS~m~~~ki~~~l~~~gi~~~v~~~~~~e~~-~~~~~~D~iv~t~~~~~ 62 (94)
T PRK10310 13 VATSTMAAEEIKELCQSHNIPVELIQCRVNEIE-TYMDGVHLICTTARVDR 62 (94)
T ss_pred hhHHHHHHHHHHHHHHHCCCeEEEEEecHHHHh-hhcCCCCEEEECCcccc
Confidence 665444 34555677766776444443333444 33344588888764433
No 103
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=25.00 E-value=59 Score=28.47 Aligned_cols=22 Identities=14% Similarity=0.190 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhCCCEEEEEeee
Q 029435 82 SLVTYASIQALKPDLIINAGTA 103 (193)
Q Consensus 82 a~~~~~li~~~~~~~vi~~G~a 103 (193)
...+..+.++|+|+.++++||+
T Consensus 69 ~~~~~~f~~~fgP~R~id~GIa 90 (355)
T PTZ00182 69 YKCTKGLLDKYGPDRVFDTPIT 90 (355)
T ss_pred hhhhHHHHHHhCCCceeecCcc
Confidence 3446788899999999999875
No 104
>PRK14813 NADH dehydrogenase subunit B; Provisional
Probab=24.95 E-value=1.5e+02 Score=23.74 Aligned_cols=45 Identities=11% Similarity=0.205 Sum_probs=29.9
Q ss_pred EEEECCEeEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeeeCcc
Q 029435 52 HGTYKDLHLNIIWPGKDTSLEVDSVGTISASLVTYASIQAL-KPDLIINAGTAGGF 106 (193)
Q Consensus 52 ~g~~~~~~v~~~~~G~~~~~~~~~iG~v~Aa~~~~~li~~~-~~~~vi~~G~aG~l 106 (193)
++.-++-++.++... +- .+.+-.+.++.++- +|+.||.+|.|..-
T Consensus 62 ~asPR~ADvllVtG~---------Vt-~km~~~l~~~y~qmPePK~VIA~GaCA~s 107 (189)
T PRK14813 62 RSSPRQSDLMIVAGT---------VT-MKMAERVVRLYEQMPEPRYVLSMGSCSNC 107 (189)
T ss_pred cCCcccceEEEEecc---------Cc-hhhHHHHHHHHHhCCCCCEEEEecccccC
Confidence 444445566666554 44 46666677777553 79999999998643
No 105
>PRK14814 NADH dehydrogenase subunit B; Provisional
Probab=24.82 E-value=1.5e+02 Score=23.60 Aligned_cols=43 Identities=14% Similarity=0.313 Sum_probs=28.8
Q ss_pred ECCEeEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeee---CccC
Q 029435 55 YKDLHLNIIWPGKDTSLEVDSVGTISASLVTYASIQAL-KPDLIINAGTA---GGFK 107 (193)
Q Consensus 55 ~~~~~v~~~~~G~~~~~~~~~iG~v~Aa~~~~~li~~~-~~~~vi~~G~a---G~l~ 107 (193)
-+..++.++... +-. +.+-.+..+.++- +|+.||.+|.| ||+.
T Consensus 71 PR~ADvllVtG~---------VT~-~m~~~l~~~yeqmp~pk~VIAvGsCA~~GGi~ 117 (186)
T PRK14814 71 PRQADMILVLGT---------ITY-KMAPVLRQIYDQMAEPKFVISVGACASSGGMF 117 (186)
T ss_pred cccceEEEEecc---------Cch-hhHHHHHHHHHhcCCCCeEEEeccccccCCcc
Confidence 344567666654 554 4666666766553 69999999999 5554
No 106
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=24.25 E-value=60 Score=27.06 Aligned_cols=55 Identities=15% Similarity=0.239 Sum_probs=30.4
Q ss_pred eEEEEecCCCC-CCCC-CCCCHHHHHHHHHHHHHHhCCCEEEEEeeeCccCCCCCCcccEEEecc
Q 029435 59 HLNIIWPGKDT-SLEV-DSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISD 121 (193)
Q Consensus 59 ~v~~~~~G~~~-~~~~-~~iG~v~Aa~~~~~li~~~~~~~vi~~G~aG~l~~~~~~iGDvvi~~~ 121 (193)
.|.++.++ | .++- .-.| +.++..||.+++|+.++.-|+..+-. .-.+|+.+|...
T Consensus 176 ~IlLfhtp--Pd~~kg~~h~G----S~~V~dlIk~~~P~ivl~Ghihe~~~--~e~lG~TlVVNP 232 (255)
T PF14582_consen 176 KILLFHTP--PDLHKGLIHVG----SAAVRDLIKTYNPDIVLCGHIHESHG--KESLGKTLVVNP 232 (255)
T ss_dssp EEEEESS---BTBCTCTBTTS----BHHHHHHHHHH--SEEEE-SSS-EE----EEETTEEEEE-
T ss_pred EEEEEecC--CccCCCccccc----HHHHHHHHHhcCCcEEEecccccchh--hHHhCCEEEecC
Confidence 36666666 3 2221 2333 45677899999999999855544443 347888877653
No 107
>PHA02518 ParA-like protein; Provisional
Probab=24.10 E-value=1.9e+02 Score=22.19 Aligned_cols=25 Identities=8% Similarity=0.053 Sum_probs=18.9
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCEE
Q 029435 73 VDSVGTISASLVTYASIQALKPDLI 97 (193)
Q Consensus 73 ~~~iG~v~Aa~~~~~li~~~~~~~v 97 (193)
++|+||...+..+...+.+.+.+.+
T Consensus 9 KGGvGKTT~a~~la~~la~~g~~vl 33 (211)
T PHA02518 9 KGGAGKTTVATNLASWLHADGHKVL 33 (211)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCeEE
Confidence 6789999888888777777665543
No 108
>PF11858 DUF3378: Domain of unknown function (DUF3378); InterPro: IPR024568 Ribonuclease HIII 3.1.26 from EC cleaves RNA from DNA-RNA hybrids. It catalyses endonucleolytic cleavage to 5'-phospho-monoesters. Two types of ribonuclease H in Bacillus subtilis, RNase HII (rnhB) and RNase HIII (rnhC), are both known experimentally and are quite similar to each other []. The only RNase H homologue in the Mycoplasmas resembles rnhC. Archaeal forms resemble HII more closely than HIII. This entry represents the uncharacterised N-terminal domain of bacterial RNase HIII.; PDB: 3ASM_A 2D0C_A 2D0B_A 2D0A_A.
Probab=24.01 E-value=2.4e+02 Score=19.17 Aligned_cols=45 Identities=9% Similarity=0.228 Sum_probs=30.8
Q ss_pred EEeecHHHHHHHHHhccccccCCCCCCCCCCeEEEEEEECCEeEEEEecC
Q 029435 17 IIIAMQTEAMPLVNKFELKEDQDSVFPEGVPWVRYHGTYKDLHLNIIWPG 66 (193)
Q Consensus 17 Ii~A~~~E~~~l~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~~~G 66 (193)
++.....+++.+.+.+....... ..+...|..+.++-.|.+-.+|
T Consensus 4 vlkl~~~~i~~l~~~y~~~~~~~-----~~p~~~f~aK~~~~tIt~Y~SG 48 (81)
T PF11858_consen 4 VLKLTSEQIEKLKKYYKPYLTSS-----KPPYAVFQAKYNGVTITAYKSG 48 (81)
T ss_dssp EEE--HHHHHHHHHHSTT-B-SS-------TTEEEEEEETTEEEEEETTS
T ss_pred EEECCHHHHHHHHHHHHHhcccC-----CCCCEEEEEeCCCeEEEEEeCC
Confidence 34667788999999986555432 3457778899999999988887
No 109
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=23.82 E-value=1.8e+02 Score=23.78 Aligned_cols=27 Identities=15% Similarity=0.212 Sum_probs=20.8
Q ss_pred CCCCCHHHHHHHHHHHHHH-hCCCEEEE
Q 029435 73 VDSVGTISASLVTYASIQA-LKPDLIIN 99 (193)
Q Consensus 73 ~~~iG~v~Aa~~~~~li~~-~~~~~vi~ 99 (193)
++|+||...+.-+...+.+ .+-+.++.
T Consensus 10 KGGVGKTT~a~nLA~~La~~~G~rvLli 37 (275)
T PRK13233 10 KGGIGKSTTTQNTAAAMAYFHDKKVFIH 37 (275)
T ss_pred CCCCcHHHHHHHHHHHHHHhcCCeEEEe
Confidence 6789999999988888886 47664443
No 110
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=23.59 E-value=3.3e+02 Score=24.03 Aligned_cols=27 Identities=11% Similarity=-0.002 Sum_probs=20.7
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEEE
Q 029435 73 VDSVGTISASLVTYASIQALKPDLIIN 99 (193)
Q Consensus 73 ~~~iG~v~Aa~~~~~li~~~~~~~vi~ 99 (193)
++|+||...+..+...+...+.+.++.
T Consensus 115 KGGVGKTT~a~nLA~~LA~~G~rVLlI 141 (388)
T PRK13705 115 KGGVYKTSVSVHLAQDLALKGLRVLLV 141 (388)
T ss_pred CCCchHHHHHHHHHHHHHhcCCCeEEE
Confidence 678999998888888887777654443
No 111
>CHL00023 ndhK NADH dehydrogenase subunit K
Probab=23.48 E-value=1.3e+02 Score=24.83 Aligned_cols=46 Identities=15% Similarity=0.251 Sum_probs=29.8
Q ss_pred EEEECCEeEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeee---CccC
Q 029435 52 HGTYKDLHLNIIWPGKDTSLEVDSVGTISASLVTYASIQAL-KPDLIINAGTA---GGFK 107 (193)
Q Consensus 52 ~g~~~~~~v~~~~~G~~~~~~~~~iG~v~Aa~~~~~li~~~-~~~~vi~~G~a---G~l~ 107 (193)
.+.-+.-++.++... +- -+.+-++.++.+.- .|+.||..|.| ||+-
T Consensus 66 ~aSPRhADvliVtG~---------VT-~km~~~L~rlyeqmPePK~VIA~GaCA~sGGif 115 (225)
T CHL00023 66 RSSPRQADLILTAGT---------VT-MKMAPSLVRLYEQMPEPKYVIAMGACTITGGMF 115 (225)
T ss_pred cCCcccceEEEEecC---------Cc-cccHHHHHHHHHhcCCCCeEEEEccccccCCcc
Confidence 334445566666544 33 35566666766544 79999999998 6664
No 112
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=22.35 E-value=1.9e+02 Score=21.45 Aligned_cols=27 Identities=11% Similarity=0.156 Sum_probs=20.5
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEEE
Q 029435 73 VDSVGTISASLVTYASIQALKPDLIIN 99 (193)
Q Consensus 73 ~~~iG~v~Aa~~~~~li~~~~~~~vi~ 99 (193)
++|+||...+..+...+.+.+-+.++.
T Consensus 8 kgG~GKtt~a~~la~~l~~~g~~vllv 34 (179)
T cd02036 8 KGGVGKTTTTANLGTALAQLGYKVVLI 34 (179)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 567999998888888887767664444
No 113
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=22.06 E-value=2.5e+02 Score=22.95 Aligned_cols=35 Identities=6% Similarity=-0.052 Sum_probs=25.3
Q ss_pred EeEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCEEE
Q 029435 58 LHLNIIWPGKDTSLEVDSVGTISASLVTYASIQALKPDLII 98 (193)
Q Consensus 58 ~~v~~~~~G~~~~~~~~~iG~v~Aa~~~~~li~~~~~~~vi 98 (193)
.+++.+.++ ++|.||...|..+...+.+.+-+.++
T Consensus 103 ~~vi~vts~------~~g~Gktt~a~nLA~~la~~g~~Vll 137 (274)
T TIGR03029 103 RKALAVVSA------KSGEGCSYIAANLAIVFSQLGEKTLL 137 (274)
T ss_pred CeEEEEECC------CCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 346666665 68899998888888888877755443
No 114
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=21.64 E-value=2.5e+02 Score=22.72 Aligned_cols=26 Identities=12% Similarity=0.124 Sum_probs=20.7
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEE
Q 029435 73 VDSVGTISASLVTYASIQALKPDLII 98 (193)
Q Consensus 73 ~~~iG~v~Aa~~~~~li~~~~~~~vi 98 (193)
|+|+||.-.+..+...+.+.+.+.++
T Consensus 10 KGGvGKTT~a~nLA~~la~~G~~Vll 35 (231)
T PRK13849 10 KGGAGKTTALMGLCAALASDGKRVAL 35 (231)
T ss_pred CCCccHHHHHHHHHHHHHhCCCcEEE
Confidence 77899999999888888877766433
No 115
>COG3260 Ni,Fe-hydrogenase III small subunit [Energy production and conversion]
Probab=21.37 E-value=2.1e+02 Score=21.86 Aligned_cols=31 Identities=16% Similarity=0.164 Sum_probs=22.1
Q ss_pred CCHHHHHHHHHHHHHHh-CCCEEEEEeeeCcc
Q 029435 76 VGTISASLVTYASIQAL-KPDLIINAGTAGGF 106 (193)
Q Consensus 76 iG~v~Aa~~~~~li~~~-~~~~vi~~G~aG~l 106 (193)
.=.-+.+..+.++.++. .|+.+|.+|.|+--
T Consensus 58 ~vT~~~~e~lkk~Yea~PePKiViA~GaCa~~ 89 (148)
T COG3260 58 AVTRQMREPLKKAYEAMPEPKIVIAVGACALS 89 (148)
T ss_pred cccHHHHHHHHHHHHhCCCCcEEEEEcccccC
Confidence 44446667777777655 69999999988543
No 116
>PRK06411 NADH dehydrogenase subunit B; Validated
Probab=21.14 E-value=1.4e+02 Score=23.78 Aligned_cols=44 Identities=16% Similarity=0.286 Sum_probs=29.2
Q ss_pred EECCEeEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeee---CccC
Q 029435 54 TYKDLHLNIIWPGKDTSLEVDSVGTISASLVTYASIQAL-KPDLIINAGTA---GGFK 107 (193)
Q Consensus 54 ~~~~~~v~~~~~G~~~~~~~~~iG~v~Aa~~~~~li~~~-~~~~vi~~G~a---G~l~ 107 (193)
.-+..++.++... +-. +.+-.+.++.++- +|+.||.+|.| ||+-
T Consensus 71 sPr~aDvllV~G~---------vt~-~~~~~l~~~~e~mp~pk~VIA~GaCA~~GGif 118 (183)
T PRK06411 71 SPRQADLMIVAGT---------LTN-KMAPALRRLYDQMPEPKWVISMGSCANSGGMY 118 (183)
T ss_pred CCCceeEEEEEeC---------CCc-cchHHHHHHHHHcCcCCeEEEEecccccCCcc
Confidence 3345567777766 543 3566666666443 79999999999 6654
No 117
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=20.97 E-value=2.5e+02 Score=22.84 Aligned_cols=26 Identities=15% Similarity=0.169 Sum_probs=20.2
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEE
Q 029435 73 VDSVGTISASLVTYASIQALKPDLII 98 (193)
Q Consensus 73 ~~~iG~v~Aa~~~~~li~~~~~~~vi 98 (193)
++|+||...+.-+...+.+.+-+.++
T Consensus 10 KGGVGKTT~~~nLA~~la~~G~kVLl 35 (270)
T PRK13185 10 KGGIGKSTTSSNLSAAFAKLGKKVLQ 35 (270)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 67899999888888888877765443
No 118
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=20.88 E-value=2.4e+02 Score=22.31 Aligned_cols=23 Identities=13% Similarity=0.150 Sum_probs=18.2
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCC
Q 029435 73 VDSVGTISASLVTYASIQALKPD 95 (193)
Q Consensus 73 ~~~iG~v~Aa~~~~~li~~~~~~ 95 (193)
++|+||...|..+...+.+.+-+
T Consensus 10 KGGvGKTt~a~nla~~la~~g~~ 32 (246)
T TIGR03371 10 KGGVGKTTLTANLASALKLLGEP 32 (246)
T ss_pred CCCccHHHHHHHHHHHHHhCCCc
Confidence 67799999888888888765544
No 119
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=20.74 E-value=2.6e+02 Score=21.01 Aligned_cols=27 Identities=7% Similarity=0.094 Sum_probs=19.8
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEEE
Q 029435 73 VDSVGTISASLVTYASIQALKPDLIIN 99 (193)
Q Consensus 73 ~~~iG~v~Aa~~~~~li~~~~~~~vi~ 99 (193)
++|+||...|..+...+.+.+-+.++.
T Consensus 7 kGG~GKTt~a~~la~~la~~g~~Vlli 33 (195)
T PF01656_consen 7 KGGVGKTTIAANLAQALARKGKKVLLI 33 (195)
T ss_dssp STTSSHHHHHHHHHHHHHHTTS-EEEE
T ss_pred CCCccHHHHHHHHHhcccccccccccc
Confidence 578999999998888887755554443
No 120
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=20.29 E-value=2.4e+02 Score=19.42 Aligned_cols=48 Identities=15% Similarity=-0.005 Sum_probs=30.2
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEEEeeeCccCCCCCCcccEEEecceeE
Q 029435 76 VGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAF 124 (193)
Q Consensus 76 iG~v~Aa~~~~~li~~~~~~~vi~~G~aG~l~~~~~~iGDvvi~~~~~~ 124 (193)
++.--.+-.+++++++.+.+.=+.....+.+. ....--|+|+...-+.
T Consensus 10 ~sTS~~~~ki~~~~~~~~~~~~v~~~~~~~~~-~~~~~~Diil~~Pqv~ 57 (96)
T cd05564 10 MSTSILVKKMKKAAEKRGIDAEIEAVPESELE-EYIDDADVVLLGPQVR 57 (96)
T ss_pred chHHHHHHHHHHHHHHCCCceEEEEecHHHHH-HhcCCCCEEEEChhHH
Confidence 76655555566777778888666655555554 3445568888775443
Done!