BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029437
(193 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex
pdb|1F6B|B Chain B, Crystal Structure Of Sar1-Gdp Complex
Length = 198
Score = 204 bits (520), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 104/195 (53%), Positives = 125/195 (64%), Gaps = 4/195 (2%)
Query: 2 FLLDWFYG----VLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSE 57
F+ DW Y VL LGL++K K++FLGLDNAGKTTLLHMLKD+RL QH PT +PTSE
Sbjct: 3 FIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSE 62
Query: 58 ELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXX 117
EL+I + F FDLGGH ARRVW ER ESK+
Sbjct: 63 ELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDE 122
Query: 118 XXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVR 177
NVP L+LGNKID P A SEE LR GL TTGKG V+L + N RPLEVFMCS+++
Sbjct: 123 TIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLK 182
Query: 178 KMGYGDGFKWLSQYI 192
+ GYG+GF+W++QYI
Sbjct: 183 RQGYGEGFRWMAQYI 197
>pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
pdb|2FMX|B Chain B, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
Length = 195
Score = 201 bits (510), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 101/186 (54%), Positives = 121/186 (65%)
Query: 7 FYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKF 66
F VL LGL++K K++FLGLDNAGKTTLLHMLKD+RL QH PT +PTSEEL+I + F
Sbjct: 9 FSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTF 68
Query: 67 KAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLV 126
FDLGGH ARRVW ER ESK+ NVP L+
Sbjct: 69 TTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILI 128
Query: 127 LGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFK 186
LGNKID P A SEE LR GL TTGKG V+L + N RPLEVFMCS++++ GYG+GF+
Sbjct: 129 LGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFR 188
Query: 187 WLSQYI 192
W++QYI
Sbjct: 189 WMAQYI 194
>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp
pdb|2GAO|B Chain B, Crystal Structure Of Human Sar1a In Complex With Gdp
Length = 208
Score = 197 bits (501), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 100/188 (53%), Positives = 120/188 (63%)
Query: 5 DWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKI 64
+ F VL LGL++K K++FLGLDNAGKTTLLHMLKD+RL QH PT +PTSEEL+I +
Sbjct: 20 NGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGM 79
Query: 65 KFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPF 124
F FDLGGH+ ARRVW R ESK NVP
Sbjct: 80 TFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALMTDETISNVPI 139
Query: 125 LVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDG 184
L+LGNKID A SEE+LR GL TTGKG V L + N RP+EVFMCS++++ GYG+G
Sbjct: 140 LILGNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCSVLKRQGYGEG 199
Query: 185 FKWLSQYI 192
F+WLSQYI
Sbjct: 200 FRWLSQYI 207
>pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
pdb|2FA9|B Chain B, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
Length = 189
Score = 197 bits (500), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 100/186 (53%), Positives = 120/186 (64%)
Query: 7 FYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKF 66
F VL LGL++K K++FLGLDNAGKTTLLHMLKD+RL QH PT +PTSEEL+I + F
Sbjct: 3 FSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTF 62
Query: 67 KAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLV 126
FDLGG ARRVW ER ESK+ NVP L+
Sbjct: 63 TTFDLGGGIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILI 122
Query: 127 LGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFK 186
LGNKID P A SEE LR GL TTGKG V+L + N RPLEVFMCS++++ GYG+GF+
Sbjct: 123 LGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFR 182
Query: 187 WLSQYI 192
W++QYI
Sbjct: 183 WMAQYI 188
>pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2O|D Chain D, Crystal Structure Of The Sec23-Sar1 Complex
Length = 190
Score = 191 bits (484), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 101/187 (54%), Positives = 119/187 (63%), Gaps = 5/187 (2%)
Query: 6 WFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIK 65
WF VLASLGLW K K+LFLGLDNAGKTTLLHMLK++RL QPT +PTSEEL+IG IK
Sbjct: 9 WFRDVLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIK 68
Query: 66 FKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFL 125
F FDLGGH ARR+W ERF E++ +VPF+
Sbjct: 69 FTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFV 128
Query: 126 VLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGF 185
+LGNKID P A SE ELR LGL N TTG ++ RP+EVFMCS+V + GY + F
Sbjct: 129 ILGNKIDAPNAVSEAELRSALGLLN-TTGSQRI----EGQRPVEVFMCSVVMRNGYLEAF 183
Query: 186 KWLSQYI 192
+WLSQYI
Sbjct: 184 QWLSQYI 190
>pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment
Of Sec31
Length = 167
Score = 167 bits (423), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 89/170 (52%), Positives = 107/170 (62%), Gaps = 5/170 (2%)
Query: 22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVW 81
K+LFLGLDNAGKTTLLHMLK++RL QPT +PTSEEL+IG IKF FDLGGH ARR+W
Sbjct: 3 KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLW 62
Query: 82 XXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEE 141
ERF E++ +VPF++LGNKID P A SE E
Sbjct: 63 KDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAE 122
Query: 142 LRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQY 191
LR LGL N TTG ++ RP+EVFMCS+V + GY + F+WLSQY
Sbjct: 123 LRSALGLLN-TTGSQRI----EGQRPVEVFMCSVVMRNGYLEAFQWLSQY 167
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 71/180 (39%), Gaps = 14/180 (7%)
Query: 16 LW--QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGG 73
LW KE +IL LGLD AGKTT+L+ L+ +V +PT E LS +K +DLGG
Sbjct: 12 LWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGG 71
Query: 74 HQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDI 133
R W +R + + K + LV NK D
Sbjct: 72 QTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQ 131
Query: 134 PYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK 193
P A S E+ L L V L D R + S ++ G +G WL IK
Sbjct: 132 PGALSASEVSKELNL---------VELKD---RSWSIVASSAIKGEGITEGLDWLIDVIK 179
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 69/176 (39%), Gaps = 12/176 (6%)
Query: 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIA 77
KE +IL +GLD AGKTT+L+ LK ++ PT E + I F +D+GG
Sbjct: 15 NKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVECVQYCNISFTVWDVGGQDRI 74
Query: 78 RRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAA 137
R +W R E+++ N +LV NK D+P A
Sbjct: 75 RSLWRHYYCNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELCNAAWLVFANKQDLPEAM 134
Query: 138 SEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK 193
S E+ LGL + RP + G +G +WLS +K
Sbjct: 135 SAAEITEKLGLHSIRN------------RPWFIQATCATSGEGLYEGLEWLSNCLK 178
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 69/176 (39%), Gaps = 12/176 (6%)
Query: 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIA 77
KE +IL +GLD AGKTT+L+ LK ++ PT E + I F +D+GG
Sbjct: 15 NKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRI 74
Query: 78 RRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAA 137
R +W R E+++ N +LV NK D+P A
Sbjct: 75 RSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPEAM 134
Query: 138 SEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK 193
S E+ LGL + RP + G +G +WLS +K
Sbjct: 135 SAAEITEKLGLHSIRN------------RPWFIQATCATSGEGLYEGLEWLSNSLK 178
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 67/174 (38%), Gaps = 12/174 (6%)
Query: 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIAR 78
+E +IL LGLDNAGKTTLL L E + PTQ + + K +D+GG + R
Sbjct: 16 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIR 75
Query: 79 RVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAAS 138
W +RF E+ + VP L+ NK D+ AA
Sbjct: 76 PYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP 135
Query: 139 EEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192
E+ L L R ++ CS + G DG W+ + +
Sbjct: 136 ASEIAEGLNLHTIRD------------RVWQIQSCSALTGEGVQDGMNWVCKNV 177
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 67/174 (38%), Gaps = 12/174 (6%)
Query: 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIAR 78
+E +IL LGLDNAGKTTLL L E + PTQ + + K +D+GG + R
Sbjct: 15 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIR 74
Query: 79 RVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAAS 138
W +RF E+ + VP L+ NK D+ AA
Sbjct: 75 PYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP 134
Query: 139 EEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192
E+ L L R ++ CS + G DG W+ + +
Sbjct: 135 ASEIAEGLNLHTIRD------------RVWQIQSCSALTGEGVQDGMNWVCKNV 176
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 67.0 bits (162), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 67/173 (38%), Gaps = 12/173 (6%)
Query: 20 EAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARR 79
E +IL LGLDNAGKTTLL L E + PTQ + + K +D+GG + R
Sbjct: 4 EVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRP 63
Query: 80 VWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASE 139
W +RF E+ + VP L+ NK D+ AA
Sbjct: 64 YWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPA 123
Query: 140 EELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192
E+ L NL R ++ CS + G DG W+ + +
Sbjct: 124 SEIAEGL------------NLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 164
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 67.0 bits (162), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 69/176 (39%), Gaps = 12/176 (6%)
Query: 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIA 77
KE +IL +GLD AGKTT+L+ LK ++ PT E + I F +D+GG
Sbjct: 15 NKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRI 74
Query: 78 RRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAA 137
R +W R E+++ N +LV NK D+P A
Sbjct: 75 RSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAVWLVFANKQDLPEAM 134
Query: 138 SEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK 193
S E+ LGL + RP + G +G +WLS +K
Sbjct: 135 SAAEITEKLGLHSIRN------------RPWFIQSTCATSGEGLYEGLEWLSNNLK 178
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
Length = 164
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 67/173 (38%), Gaps = 12/173 (6%)
Query: 20 EAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARR 79
E +IL LGLDNAGKTTLL L E + PTQ + + K +D+GG + R
Sbjct: 4 EVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGLRKIRP 63
Query: 80 VWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASE 139
W +RF E+ + VP L+ NK D+ AA
Sbjct: 64 YWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPA 123
Query: 140 EELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192
E+ L NL R ++ CS + G DG W+ + +
Sbjct: 124 SEIAEGL------------NLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 164
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 67/172 (38%), Gaps = 12/172 (6%)
Query: 22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVW 81
+IL +GLD AGKTT+L+ LK ++ PT E + I F +D+GG R +W
Sbjct: 2 RILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRIRSLW 61
Query: 82 XXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEE 141
R E+++ N +LV NK D+P A S E
Sbjct: 62 RHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPEAMSAAE 121
Query: 142 LRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK 193
+ LGL + RP + G +G +WLS +K
Sbjct: 122 ITEKLGLHSIRN------------RPWFIQATCATSGEGLYEGLEWLSNSLK 161
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 62/150 (41%), Gaps = 6/150 (4%)
Query: 12 ASLGLW------QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIK 65
S+G W +KE +IL +GLD AGKT++L+ LK +V PT E + I
Sbjct: 3 GSMGSWLSKLLGKKEMRILMVGLDAAGKTSILYKLKLGEIVTTIPTIGFNVETVEYKNIS 62
Query: 66 FKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFL 125
F +D+GG R +W +R E+++ N L
Sbjct: 63 FTVWDVGGQDKIRPLWRHYYQNTQAIIFVVDSNDRDRIGEAREELMKMLNEDEMRNAILL 122
Query: 126 VLGNKIDIPYAASEEELRYHLGLSNFTTGK 155
V NK D+P A S E+ LGL K
Sbjct: 123 VFANKHDLPQAMSISEVTEKLGLQTIKNRK 152
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 63.5 bits (153), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 61/137 (44%)
Query: 15 GLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGH 74
GL KE +IL LGLD AGKTT+L+ LK + V PT E ++ +KF +D+GG
Sbjct: 317 GLSNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQ 376
Query: 75 QIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIP 134
R +W +R E+++ + L+ NK D+P
Sbjct: 377 DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP 436
Query: 135 YAASEEELRYHLGLSNF 151
A E++ LGL+
Sbjct: 437 DAMKPHEIQEKLGLTRI 453
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 66/175 (37%), Gaps = 12/175 (6%)
Query: 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIA 77
+E K++ +GLDNAGKTT+L+ +V PT EE+ + F +D+GG +
Sbjct: 14 NQEHKVIIVGLDNAGKTTILYQFLMNEVVHTSPTIGSNVEEIVVKNTHFLMWDIGGQESL 73
Query: 78 RRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAA 137
R W ER A +K+ L+ NK D+
Sbjct: 74 RSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAAVLIFANKQDMKGCM 133
Query: 138 SEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192
+ E+ +L LS+ P + C + G G +W++ I
Sbjct: 134 TAAEISKYLTLSSIKD------------HPWHIQSCCALTGEGLCQGLEWMTSRI 176
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 59/134 (44%)
Query: 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIA 77
KE +IL LGLD AGKTT+L+ LK + V PT E ++ +KF +D+GG
Sbjct: 10 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKI 69
Query: 78 RRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAA 137
R +W +R E+++ + L+ NK D+P A
Sbjct: 70 RPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM 129
Query: 138 SEEELRYHLGLSNF 151
E++ LGL+
Sbjct: 130 KPHEIQEKLGLTRI 143
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 59/134 (44%)
Query: 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIA 77
KE +IL LGLD AGKTT+L+ LK + V PT E ++ +KF +D+GG
Sbjct: 11 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKI 70
Query: 78 RRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAA 137
R +W +R E+++ + L+ NK D+P A
Sbjct: 71 RPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM 130
Query: 138 SEEELRYHLGLSNF 151
E++ LGL+
Sbjct: 131 KPHEIQEKLGLTRI 144
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 68/182 (37%), Gaps = 12/182 (6%)
Query: 9 GVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKA 68
G L S +K+ +IL +GLD AGKTT+L+ LK +V PT E + I F
Sbjct: 18 GSLFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTV 77
Query: 69 FDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLG 128
+D+GG R +W ER ES + LV
Sbjct: 78 WDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFA 137
Query: 129 NKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWL 188
NK D+P A EL LGL + + R V + G DG WL
Sbjct: 138 NKQDMPNAMPVSELTDKLGLQHLRS------------RTWYVQATCATQGTGLYDGLDWL 185
Query: 189 SQ 190
S
Sbjct: 186 SH 187
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 70/175 (40%), Gaps = 12/175 (6%)
Query: 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIAR 78
+E +IL LGLD AGKTT+L+ L+ +V PT E ++ +KF+ +DLGG R
Sbjct: 1 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIR 60
Query: 79 RVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAAS 138
W +R SK +V NK D+ A +
Sbjct: 61 PYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT 120
Query: 139 EEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK 193
E+ LGL L D R ++F S + G + +WL + +K
Sbjct: 121 PSEMANALGLP---------ALKD---RKWQIFKTSATKGTGLDEAMEWLVETLK 163
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 74/187 (39%), Gaps = 16/187 (8%)
Query: 8 YGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFK 67
+G L S +KE +IL +GLD AGKTT+L+ LK +V PT E + I F
Sbjct: 8 FGKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFT 67
Query: 68 AFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVL 127
+D+GG R +W +R E++ + LV
Sbjct: 68 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVF 127
Query: 128 GNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYG--DGF 185
NK D+P A + E+ LGL ++R ++ S G G +G
Sbjct: 128 ANKQDLPNAMNAAEITDKLGL--------------HSLRQRHWYIQSTCATSGEGLYEGL 173
Query: 186 KWLSQYI 192
WLS I
Sbjct: 174 DWLSNNI 180
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
Length = 166
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 70/175 (40%), Gaps = 12/175 (6%)
Query: 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIAR 78
+E +IL LGLD AGKTT+L+ L+ +V PT E ++ +KF+ +DLGG R
Sbjct: 3 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIR 62
Query: 79 RVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAAS 138
W +R SK +V NK D+ A +
Sbjct: 63 PYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT 122
Query: 139 EEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK 193
E+ LGL L D R ++F S + G + +WL + +K
Sbjct: 123 SSEMANSLGLP---------ALKD---RKWQIFKTSATKGTGLDEAMEWLVETLK 165
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 57/131 (43%)
Query: 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIA 77
+KE +IL +GLD AGKTT+L+ LK +V PT E + I F +D+GG
Sbjct: 14 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 73
Query: 78 RRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAA 137
R +W ER E+++ + LV NK D+P A
Sbjct: 74 RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM 133
Query: 138 SEEELRYHLGL 148
+ E+ LGL
Sbjct: 134 NAAEITDKLGL 144
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 57/131 (43%)
Query: 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIA 77
+KE +IL +GLD AGKTT+L+ LK +V PT E + I F +D+GG
Sbjct: 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74
Query: 78 RRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAA 137
R +W ER E+++ + LV NK D+P A
Sbjct: 75 RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM 134
Query: 138 SEEELRYHLGL 148
+ E+ LGL
Sbjct: 135 NAAEITDKLGL 145
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 59/134 (44%)
Query: 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIA 77
KE +IL LGLD AGKTT+L+ LK + V PT E ++ +KF +D+GG
Sbjct: 11 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGLDKI 70
Query: 78 RRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAA 137
R +W +R E+++ + L+ NK D+P A
Sbjct: 71 RPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM 130
Query: 138 SEEELRYHLGLSNF 151
E++ LGL+
Sbjct: 131 KPHEIQEKLGLTRI 144
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 57/131 (43%)
Query: 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIA 77
+KE +IL +GLD AGKTT+L+ LK +V PT E + I F +D+GG
Sbjct: 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 222
Query: 78 RRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAA 137
R +W ER E+++ + LV NK D+P A
Sbjct: 223 RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM 282
Query: 138 SEEELRYHLGL 148
+ E+ LGL
Sbjct: 283 NAAEITDKLGL 293
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 72/178 (40%), Gaps = 16/178 (8%)
Query: 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIA 77
+K+ +IL +GLD AGKTT+L+ +K +V PT E + I F +D+GG
Sbjct: 15 KKDVRILMVGLDAAGKTTILYKVKLGEVVTTIPTIGFNVETVEFRNISFTVWDVGGQDKI 74
Query: 78 RRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAA 137
R +W ER ++++ + LV NK D+P A
Sbjct: 75 RPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKDAIILVFANKQDLPNAM 134
Query: 138 SEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYG--DGFKWLSQYIK 193
S E+ L L + +R F+ S G G +GF WL+ ++
Sbjct: 135 SAAEVTEKLHL--------------NTIRERNWFIQSTCATRGDGLYEGFDWLTTHLN 178
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 59.7 bits (143), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 66/176 (37%), Gaps = 12/176 (6%)
Query: 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIA 77
+E K++ +GLDNAGKTT+L+ +V PT EE+ I +F +D+GG +
Sbjct: 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESL 73
Query: 78 RRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAA 137
R W ER + +++ L+ NK D+
Sbjct: 74 RSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECM 133
Query: 138 SEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK 193
+ E+ L L++ + + C + G G +W+ +K
Sbjct: 134 TVAEISQFLKLTSIKDHQWHIQ------------ACCALTGEGLCQGLEWMMSRLK 177
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 59.7 bits (143), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 58/132 (43%)
Query: 20 EAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARR 79
E +IL LGLD AGKTT+L+ LK + V PT E ++ +KF +D+GG R
Sbjct: 3 EMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGLDKIRP 62
Query: 80 VWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASE 139
+W +R E+++ + L+ NK D+P A
Sbjct: 63 LWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP 122
Query: 140 EELRYHLGLSNF 151
E++ LGL+
Sbjct: 123 HEIQEKLGLTRI 134
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 58/132 (43%)
Query: 20 EAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARR 79
E +IL LGLD AGKTT+L+ LK + V PT E ++ +KF +D+GG R
Sbjct: 2 EMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGLDKIRP 61
Query: 80 VWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASE 139
+W +R E+++ + L+ NK D+P A
Sbjct: 62 LWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP 121
Query: 140 EELRYHLGLSNF 151
E++ LGL+
Sbjct: 122 HEIQEKLGLTRI 133
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 66/176 (37%), Gaps = 12/176 (6%)
Query: 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIA 77
+E K++ +GLDNAGKTT+L+ +V PT EE+ I +F +D+GG +
Sbjct: 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESL 73
Query: 78 RRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAA 137
R W ER + +++ L+ NK D+
Sbjct: 74 RSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECM 133
Query: 138 SEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK 193
+ E+ L L++ + + C + G G +W+ +K
Sbjct: 134 TVAEISQFLKLTSIKDHQWHIQ------------ACCALTGEGLCQGLEWMMSRLK 177
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 57/130 (43%)
Query: 22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVW 81
+IL LGLD AGKTT+L+ LK + V PT E ++ +KF +D+GG R +W
Sbjct: 2 RILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLW 61
Query: 82 XXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEE 141
+R E+++ + L+ NK D+P A E
Sbjct: 62 RHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHE 121
Query: 142 LRYHLGLSNF 151
++ LGL+
Sbjct: 122 IQEKLGLTRI 131
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 57/130 (43%)
Query: 22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVW 81
+IL LGLD AGKTT+L+ LK + V PT E ++ +KF +D+GG R +W
Sbjct: 2 RILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLW 61
Query: 82 XXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEE 141
+R E+++ + L+ NK D+P A E
Sbjct: 62 RHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHE 121
Query: 142 LRYHLGLSNF 151
++ LGL+
Sbjct: 122 IQEKLGLTRI 131
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 77/191 (40%), Gaps = 18/191 (9%)
Query: 4 LDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQ-PTQYPTSEELSIG 62
LDWF + W++E ++ +GL +GKTT ++++ + + PT +++ G
Sbjct: 20 LDWFKALF-----WKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKG 74
Query: 63 KIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNV 122
+ K +D+GG R +W E+ SK +
Sbjct: 75 NVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGI 134
Query: 123 PFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYG 182
P LVLGNK D+P A E+EL K+NL+ R + + S K
Sbjct: 135 PVLVLGNKRDLPGALDEKELIE------------KMNLSAIQDREICCYSISCKEKDNID 182
Query: 183 DGFKWLSQYIK 193
+WL Q+ K
Sbjct: 183 ITLQWLIQHSK 193
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 66/176 (37%), Gaps = 12/176 (6%)
Query: 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIA 77
+E K++ +GLDNAGKTT+L+ +V PT EE+ I +F +D+GG +
Sbjct: 20 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESL 79
Query: 78 RRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAA 137
R W ER + +++ L+ NK D+
Sbjct: 80 RSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECM 139
Query: 138 SEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK 193
+ E+ L L++ + + C + G G +W+ +K
Sbjct: 140 TVAEISQFLKLTSIKDHQWHIQ------------ACCALTGEGLCQGLEWMMSRLK 183
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
Length = 171
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 69/175 (39%), Gaps = 12/175 (6%)
Query: 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIAR 78
+E +IL LGLD AGKTT+L+ L+ +V PT E ++ +KF+ +DLGG R
Sbjct: 6 REXRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIR 65
Query: 79 RVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAAS 138
W +R SK +V NK D A +
Sbjct: 66 PYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAXLEEEELRKAILVVFANKQDXEQAXT 125
Query: 139 EEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK 193
E LGL L D R ++F S + G + +WL + +K
Sbjct: 126 SSEXANSLGLP---------ALKD---RKWQIFKTSATKGTGLDEAXEWLVETLK 168
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 55/133 (41%)
Query: 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIAR 78
+E K++ +GLDNAGKTT+L+ +V PT EE+ I +F +D+GG + R
Sbjct: 20 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLR 79
Query: 79 RVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAAS 138
W ER + +++ L+ NK D+ +
Sbjct: 80 SSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMT 139
Query: 139 EEELRYHLGLSNF 151
E+ L L++
Sbjct: 140 VAEISQFLKLTSI 152
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 58/130 (44%)
Query: 22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVW 81
+IL LGLD AGKTT+L+ LK + V PT E ++ +KF +D+GG R +W
Sbjct: 2 RILXLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLW 61
Query: 82 XXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEE 141
+R E+++ + L+ NK D+P A E
Sbjct: 62 RHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREXRDAIILIFANKQDLPDAXKPHE 121
Query: 142 LRYHLGLSNF 151
++ LGL+
Sbjct: 122 IQEKLGLTRI 131
>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1.
pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1
Length = 189
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 76/184 (41%), Gaps = 8/184 (4%)
Query: 6 WFYGVLASLGLWQKEAKI--LFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGK 63
W + +LGL + KI L LGLDNAGKT++L+ L +V PT E L
Sbjct: 6 WLASLKQTLGLLPADRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQYKN 65
Query: 64 IKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVP 123
I F+ +DLGG R W +R +K
Sbjct: 66 ISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSL 125
Query: 124 FLVLGNKIDIPYAASEEELRYHLGLSN-----FTTGKGKVNLADSNVRPLEVFMCSIVRK 178
L+ NK D+P AASE E+ LG+S+ +T K D V ++ ++ +R+
Sbjct: 126 LLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMD-WLVERLRE 184
Query: 179 MGYG 182
G G
Sbjct: 185 QGLG 188
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 55/130 (42%)
Query: 22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVW 81
+IL +GLD AGKTT+L+ LK +V PT E + I F +D+GG R +W
Sbjct: 2 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLW 61
Query: 82 XXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEE 141
ER E+++ + LV NK D+P A + E
Sbjct: 62 RHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAE 121
Query: 142 LRYHLGLSNF 151
+ LGL +
Sbjct: 122 ITDKLGLHSL 131
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 56.6 bits (135), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 55/130 (42%)
Query: 22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVW 81
+IL +GLD AGKTT+L+ LK +V PT E + I F +D+GG R +W
Sbjct: 4 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGLDKIRPLW 63
Query: 82 XXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEE 141
ER E+++ + LV NK D+P A + E
Sbjct: 64 RHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAE 123
Query: 142 LRYHLGLSNF 151
+ LGL +
Sbjct: 124 ITDKLGLHSL 133
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 56.6 bits (135), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 55/134 (41%)
Query: 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIA 77
+K+ +IL +GLD AGKTT+L+ LK +V PT E + I F +D+GG
Sbjct: 15 KKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDRI 74
Query: 78 RRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAA 137
R +W ER E + L+ NK D+P A
Sbjct: 75 RPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAVLLLFANKQDLPNAM 134
Query: 138 SEEELRYHLGLSNF 151
+ E+ LGL +
Sbjct: 135 AISEMTDKLGLQSL 148
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 58/133 (43%), Gaps = 1/133 (0%)
Query: 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQ-PTQYPTSEELSIGKIKFKAFDLGGHQI 76
++E ++ +GL +GKTT ++++ + + PT +++ G + K +D+GG
Sbjct: 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPR 79
Query: 77 ARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYA 136
R +W E+ SK +P LVLGNK D+P A
Sbjct: 80 FRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA 139
Query: 137 ASEEELRYHLGLS 149
E+EL + LS
Sbjct: 140 LDEKELIEKMNLS 152
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 53/136 (38%)
Query: 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIA 77
++E ++L LGLDNAGKTT+L E + PT + L K +D+GG +
Sbjct: 14 ERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSL 73
Query: 78 RRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAA 137
R W +R + ++ L+ NK D+P A
Sbjct: 74 RSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL 133
Query: 138 SEEELRYHLGLSNFTT 153
S +R L L + +
Sbjct: 134 SSNAIREVLELDSIRS 149
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 1/133 (0%)
Query: 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQ-PTQYPTSEELSIGKIKFKAFDLGGHQI 76
++E ++ +GL +GKTT ++++ + + PT +++ G + K +D+GG
Sbjct: 20 KEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQPR 79
Query: 77 ARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYA 136
R +W E+ S+ +P LVLGNK D+P A
Sbjct: 80 FRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNA 139
Query: 137 ASEEELRYHLGLS 149
E++L + LS
Sbjct: 140 LDEKQLIEKMNLS 152
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 53/136 (38%)
Query: 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIA 77
++E ++L LGLDNAGKTT+L E + PT + L K +D+GG +
Sbjct: 16 ERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSL 75
Query: 78 RRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAA 137
R W +R + ++ L+ NK D+P A
Sbjct: 76 RSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL 135
Query: 138 SEEELRYHLGLSNFTT 153
S ++ L L + +
Sbjct: 136 SXNAIQEALELDSIRS 151
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 53/136 (38%)
Query: 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIA 77
++E ++L LGLDNAGKTT+L E + PT + L K +D+GG +
Sbjct: 16 ERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSL 75
Query: 78 RRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAA 137
R W +R + ++ L+ NK D+P A
Sbjct: 76 RSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL 135
Query: 138 SEEELRYHLGLSNFTT 153
S ++ L L + +
Sbjct: 136 SCNAIQEALELDSIRS 151
>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma
Brucei With Bound Nucleotide Analogue Gppnp
Length = 199
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 70/186 (37%), Gaps = 20/186 (10%)
Query: 14 LGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYP--TSEELSIGKIKFKAFDL 71
+G + + +++ GLDN+GKTT+++ +K + T E G++ F FD+
Sbjct: 11 MGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFEKGRVAFTVFDM 70
Query: 72 GGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESK-------KXXXXXXXXXXXXNVPF 124
GG + R +W R K K VPF
Sbjct: 71 GGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPF 130
Query: 125 LVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDG 184
L NK+D A + EL L L+ + D P +F + ++ G +G
Sbjct: 131 LFFANKMDAAGAKTAAELVEILDLTTL--------MGD---HPFVIFASNGLKGTGVHEG 179
Query: 185 FKWLSQ 190
F WL +
Sbjct: 180 FSWLQE 185
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 67/180 (37%), Gaps = 18/180 (10%)
Query: 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQ---PTQYPTSEELSIGKIKFKAFDLGGHQ 75
KE +L LGLDN+GKTT+++ LK Q Q PT + E+ + F FD+ G
Sbjct: 20 KEVHVLCLGLDNSGKTTIINKLKPSN-AQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQG 78
Query: 76 IARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXN--VPFLVLGNKIDI 133
R +W R +K+ + +P L NK+D+
Sbjct: 79 RYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDL 138
Query: 134 PYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK 193
A + ++ L L N +P + ++ G +G WL I+
Sbjct: 139 RDAVTSVKVSQLLCLENIKD------------KPWHICASDAIKGEGLQEGVDWLQDQIQ 186
>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
pdb|4GOK|A Chain A, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
Length = 169
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 50/132 (37%)
Query: 22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVW 81
++L LGLDNAGKTT+L E + PT + L K +D+GG + R W
Sbjct: 3 RLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGLKSLRSYW 62
Query: 82 XXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEE 141
+R + ++ L+ NK D+P A S
Sbjct: 63 RNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNA 122
Query: 142 LRYHLGLSNFTT 153
++ L L + +
Sbjct: 123 IQEALELDSIRS 134
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 44/125 (35%)
Query: 29 DNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXX 88
DNAGKTT+L E + PT + L K +D+GG + R W
Sbjct: 27 DNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFEST 86
Query: 89 XXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGL 148
+R + ++ L+ NK D+P A S ++ L L
Sbjct: 87 DGLIWVVDSADRQRXQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSXNAIQEALEL 146
Query: 149 SNFTT 153
+ +
Sbjct: 147 DSIRS 151
>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 482
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 61/148 (41%), Gaps = 17/148 (11%)
Query: 9 GVLASLGLWQKEAKILFLGLDNAGKTTLLHML--KDERLVQHQP--TQYPTSEELSIGKI 64
G+L + GL +++ +G N GK+TLL+ L +D +V P T+ SEE+ I I
Sbjct: 237 GILLNRGL-----RMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGI 291
Query: 65 KFKAFDLGG-----HQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXX 119
F+ D G + + R+ A S
Sbjct: 292 LFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLD---ASSPLDEEDRKILERI 348
Query: 120 XNVPFLVLGNKIDIPYAASEEELRYHLG 147
N +LV+ NK+D+ +EEE++ LG
Sbjct: 349 KNKRYLVVINKVDVVEKINEEEIKNKLG 376
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 30.4 bits (67), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 44/116 (37%), Gaps = 4/116 (3%)
Query: 22 KILFLGLDNAGKTTL-LHMLKDERLVQHQPTQ---YPTSEELSIGKIKFKAFDLGGHQIA 77
K++ +G GK+ L L + DE + ++PT+ Y L +++ D G +
Sbjct: 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 65
Query: 78 RRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDI 133
+ E FA + NVPFL++GNK D+
Sbjct: 66 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL 121
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 30.0 bits (66), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 9/74 (12%)
Query: 9 GVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIG-KIKFK 67
G L G + KI+ +G N GKT L + R +P E +IG + +
Sbjct: 9 GSLVPRGSRSRIFKIIVIGDSNVGKTCLTYRFCAGR--------FPDRTEATIGVDFRER 60
Query: 68 AFDLGGHQIARRVW 81
A D+ G +I ++W
Sbjct: 61 AVDIDGERIKIQLW 74
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 30.0 bits (66), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 44/116 (37%), Gaps = 4/116 (3%)
Query: 22 KILFLGLDNAGKTTL-LHMLKDERLVQHQPTQ---YPTSEELSIGKIKFKAFDLGGHQIA 77
K++ +G GK+ L L + DE + ++PT+ Y L +++ D G +
Sbjct: 20 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 79
Query: 78 RRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDI 133
+ E FA + NVPFL++GNK D+
Sbjct: 80 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL 135
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 30.0 bits (66), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 44/116 (37%), Gaps = 4/116 (3%)
Query: 22 KILFLGLDNAGKTTL-LHMLKDERLVQHQPTQ---YPTSEELSIGKIKFKAFDLGGHQIA 77
K++ +G GK+ L L + DE + ++PT+ Y L +++ D G +
Sbjct: 8 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 67
Query: 78 RRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDI 133
+ E FA + NVPFL++GNK D+
Sbjct: 68 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL 123
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 29.6 bits (65), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 44/116 (37%), Gaps = 4/116 (3%)
Query: 22 KILFLGLDNAGKTTL-LHMLKDERLVQHQPTQ---YPTSEELSIGKIKFKAFDLGGHQIA 77
K++ +G GK+ L L + DE + ++PT+ Y L +++ D G +
Sbjct: 16 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 75
Query: 78 RRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDI 133
+ E FA + NVPFL++GNK D+
Sbjct: 76 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL 131
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 20 EAKILFLGLDNAGKTTLLHML-KDERLVQHQPT---QYPTSEELSIGKIKFKAFDLGG 73
+ KI+ +G GKT LLH+ KD + PT Y S E+ +I+ +D G
Sbjct: 7 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSG 64
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A
Rock-i:rhoe Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A
Rock-i:rhoe Complex Structure
Length = 200
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 20 EAKILFLGLDNAGKTTLLHML-KDERLVQHQPT---QYPTSEELSIGKIKFKAFDLGG 73
+ KI+ +G GKT LLH+ KD + PT Y S E+ +I+ +D G
Sbjct: 23 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSG 80
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 20 EAKILFLGLDNAGKTTLLHML-KDERLVQHQPT---QYPTSEELSIGKIKFKAFDLGG 73
+ KI+ +G GKT LLH+ KD + PT Y S E+ +I+ +D G
Sbjct: 28 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSG 85
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 44/116 (37%), Gaps = 4/116 (3%)
Query: 22 KILFLGLDNAGKTTL-LHMLKDERLVQHQPTQ---YPTSEELSIGKIKFKAFDLGGHQIA 77
K++ +G GK+ L L + DE + ++PT+ Y L +++ D G +
Sbjct: 8 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDY 67
Query: 78 RRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDI 133
+ E FA + NVPFL++GNK D+
Sbjct: 68 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL 123
>pdb|3CNL|A Chain A, Crystal Structure Of Gnp-Bound Ylqf From T. Maritima
pdb|3CNN|A Chain A, Gtp-Bound Structure Of Tm Ylqf
pdb|3CNO|A Chain A, Gdp-Bound Structue Of Tm Ylqf
Length = 262
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
Query: 21 AKILFLGLDNAGKTTLLHMLKDERL--VQHQP 50
A++L +G+ N GK+T+++ LK +R V QP
Sbjct: 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQP 131
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 9 GVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPT---SEELSI--GK 63
G +A+ G AK++ LG AGK++L+ ++ V+ Q + S+ L++
Sbjct: 1 GSMAAAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDAT 60
Query: 64 IKFKAFDLGGHQ 75
+KF+ +D G +
Sbjct: 61 VKFEIWDTAGQE 72
>pdb|1SHZ|A Chain A, Crystal Structure Of The P115rhogef Rgrgs Domain In A
Complex With Galpha(13):galpha(i1) Chimera
pdb|1SHZ|D Chain D, Crystal Structure Of The P115rhogef Rgrgs Domain In A
Complex With Galpha(13):galpha(i1) Chimera
Length = 340
Score = 27.3 bits (59), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 28 LDNAGKTTLLHMLKDER--LVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVW 81
LDN K + + ++ L+ +PT+ + + FK FD+GG + R+ W
Sbjct: 142 LDNLDKLGVPDYIPSQQDILLARRPTKGIHETHFTFKDLHFKMFDVGGQRSERKKW 197
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.140 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,978,688
Number of Sequences: 62578
Number of extensions: 172741
Number of successful extensions: 665
Number of sequences better than 100.0: 69
Number of HSP's better than 100.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 559
Number of HSP's gapped (non-prelim): 74
length of query: 193
length of database: 14,973,337
effective HSP length: 93
effective length of query: 100
effective length of database: 9,153,583
effective search space: 915358300
effective search space used: 915358300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)