Query 029437
Match_columns 193
No_of_seqs 126 out of 1817
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 12:54:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029437.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029437hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00879 Sar1 Sar1 subfamily. 100.0 6E-34 1.3E-38 202.2 23.6 189 3-192 2-190 (190)
2 PLN00223 ADP-ribosylation fact 100.0 2.5E-34 5.4E-39 202.4 21.2 164 17-192 14-177 (181)
3 smart00178 SAR Sar1p-like memb 100.0 4.1E-34 8.9E-39 202.0 22.4 183 5-192 2-184 (184)
4 cd04149 Arf6 Arf6 subfamily. 100.0 4.6E-34 1E-38 198.9 20.0 161 18-190 7-167 (168)
5 PF00025 Arf: ADP-ribosylation 100.0 3E-34 6.6E-39 200.9 19.0 174 8-192 2-175 (175)
6 smart00177 ARF ARF-like small 100.0 8E-34 1.7E-38 199.0 20.2 163 18-192 11-173 (175)
7 PTZ00133 ADP-ribosylation fact 100.0 1.5E-33 3.2E-38 198.7 21.5 164 17-192 14-177 (182)
8 cd04150 Arf1_5_like Arf1-Arf5- 100.0 2.8E-33 6E-38 193.4 20.1 158 21-190 1-158 (159)
9 cd04154 Arl2 Arl2 subfamily. 100.0 9.9E-33 2.1E-37 193.2 20.0 164 15-190 9-172 (173)
10 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 2E-32 4.3E-37 191.8 21.0 161 18-190 13-173 (174)
11 cd04158 ARD1 ARD1 subfamily. 100.0 1.8E-32 4E-37 191.1 19.0 160 22-192 1-160 (169)
12 cd04161 Arl2l1_Arl13_like Arl2 100.0 5E-32 1.1E-36 188.6 20.1 161 22-191 1-167 (167)
13 KOG0073 GTP-binding ADP-ribosy 100.0 5.1E-32 1.1E-36 178.9 16.7 171 11-192 7-177 (185)
14 cd04151 Arl1 Arl1 subfamily. 100.0 1.4E-31 3E-36 184.7 19.8 157 22-190 1-157 (158)
15 KOG0084 GTPase Rab1/YPT1, smal 100.0 2.9E-32 6.3E-37 185.7 13.9 157 16-192 5-171 (205)
16 KOG0070 GTP-binding ADP-ribosy 100.0 2.8E-32 6.1E-37 184.5 13.4 165 16-192 13-177 (181)
17 cd04157 Arl6 Arl6 subfamily. 100.0 5.1E-31 1.1E-35 182.5 19.6 158 22-191 1-162 (162)
18 KOG0092 GTPase Rab5/YPT51 and 100.0 8.6E-32 1.9E-36 182.7 14.4 157 18-192 3-166 (200)
19 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 7.8E-31 1.7E-35 185.1 20.0 163 19-192 2-169 (183)
20 cd04156 ARLTS1 ARLTS1 subfamil 100.0 6.7E-31 1.5E-35 181.6 19.1 158 22-190 1-159 (160)
21 cd04121 Rab40 Rab40 subfamily. 100.0 4.8E-31 1E-35 186.4 18.3 157 17-192 3-166 (189)
22 cd04155 Arl3 Arl3 subfamily. 100.0 2.1E-30 4.5E-35 181.4 21.0 164 16-191 10-173 (173)
23 cd00878 Arf_Arl Arf (ADP-ribos 100.0 1.7E-30 3.7E-35 179.2 19.5 157 22-190 1-157 (158)
24 KOG0077 Vesicle coat complex C 100.0 2.1E-31 4.5E-36 176.4 13.7 193 1-193 1-193 (193)
25 cd01875 RhoG RhoG subfamily. 100.0 3.1E-31 6.7E-36 188.3 15.0 170 19-192 2-176 (191)
26 cd04160 Arfrp1 Arfrp1 subfamil 100.0 2.2E-30 4.8E-35 180.2 19.1 160 22-191 1-167 (167)
27 cd04120 Rab12 Rab12 subfamily. 100.0 1.1E-30 2.4E-35 186.2 16.9 154 22-192 2-162 (202)
28 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 4.5E-31 9.7E-36 179.4 13.7 159 17-192 19-184 (221)
29 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 1.3E-30 2.8E-35 182.2 16.4 156 20-192 2-163 (172)
30 cd04126 Rab20 Rab20 subfamily. 100.0 1.9E-30 4E-35 187.0 17.7 165 21-192 1-189 (220)
31 cd04175 Rap1 Rap1 subgroup. T 100.0 3E-30 6.6E-35 179.1 16.9 156 20-192 1-162 (164)
32 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 1E-29 2.2E-34 176.4 18.6 155 23-190 2-163 (164)
33 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 5.8E-30 1.3E-34 183.2 17.8 156 21-192 1-167 (201)
34 PTZ00369 Ras-like protein; Pro 100.0 3.9E-30 8.6E-35 182.4 16.5 158 18-192 3-166 (189)
35 cd04127 Rab27A Rab27a subfamil 100.0 9.6E-30 2.1E-34 179.1 18.4 156 19-191 3-175 (180)
36 cd00877 Ran Ran (Ras-related n 100.0 4E-30 8.6E-35 178.8 16.1 153 21-192 1-158 (166)
37 cd04138 H_N_K_Ras_like H-Ras/N 100.0 4.5E-30 9.7E-35 177.5 16.3 157 20-193 1-162 (162)
38 cd04136 Rap_like Rap-like subf 100.0 3.5E-30 7.6E-35 178.4 15.8 156 20-192 1-162 (163)
39 PLN03071 GTP-binding nuclear p 100.0 5.2E-30 1.1E-34 185.5 16.5 155 18-192 11-171 (219)
40 cd04122 Rab14 Rab14 subfamily. 100.0 1.3E-29 2.8E-34 176.3 17.3 155 20-192 2-163 (166)
41 cd01874 Cdc42 Cdc42 subfamily. 100.0 6.5E-30 1.4E-34 179.1 15.7 165 21-191 2-173 (175)
42 cd04119 RJL RJL (RabJ-Like) su 100.0 1.3E-29 2.7E-34 176.3 17.1 155 21-192 1-166 (168)
43 cd04176 Rap2 Rap2 subgroup. T 100.0 4.6E-30 1E-34 177.9 14.2 156 20-192 1-162 (163)
44 cd04133 Rop_like Rop subfamily 100.0 4.2E-30 9.1E-35 179.7 14.0 153 21-191 2-171 (176)
45 cd04145 M_R_Ras_like M-Ras/R-R 100.0 1.2E-29 2.6E-34 176.0 16.2 157 20-193 2-164 (164)
46 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 7.4E-30 1.6E-34 179.5 15.3 169 18-191 3-178 (182)
47 KOG0071 GTP-binding ADP-ribosy 100.0 1.8E-29 3.8E-34 162.8 15.4 165 17-193 14-178 (180)
48 cd04159 Arl10_like Arl10-like 100.0 9.3E-29 2E-33 170.1 20.2 156 23-190 2-158 (159)
49 smart00173 RAS Ras subfamily o 100.0 1.3E-29 2.8E-34 175.9 15.7 155 21-192 1-161 (164)
50 cd01867 Rab8_Rab10_Rab13_like 100.0 3E-29 6.6E-34 174.6 17.6 156 19-192 2-164 (167)
51 cd04117 Rab15 Rab15 subfamily. 100.0 4.1E-29 9E-34 172.9 17.7 153 21-191 1-160 (161)
52 cd01871 Rac1_like Rac1-like su 100.0 1.2E-29 2.5E-34 177.7 15.1 169 20-192 1-174 (174)
53 cd01864 Rab19 Rab19 subfamily. 100.0 5.4E-29 1.2E-33 173.0 17.9 157 19-192 2-165 (165)
54 KOG0078 GTP-binding protein SE 100.0 2E-29 4.4E-34 174.1 15.4 156 16-192 8-173 (207)
55 KOG0075 GTP-binding ADP-ribosy 100.0 1.1E-29 2.3E-34 165.0 12.8 173 4-193 9-182 (186)
56 cd01860 Rab5_related Rab5-rela 100.0 6.4E-29 1.4E-33 172.2 17.3 155 20-192 1-162 (163)
57 cd04103 Centaurin_gamma Centau 100.0 4E-29 8.7E-34 172.3 15.7 151 21-192 1-158 (158)
58 cd01865 Rab3 Rab3 subfamily. 100.0 9.8E-29 2.1E-33 171.7 17.5 154 21-192 2-162 (165)
59 cd04116 Rab9 Rab9 subfamily. 100.0 6.3E-29 1.4E-33 173.4 16.6 159 18-192 3-170 (170)
60 cd04110 Rab35 Rab35 subfamily. 100.0 8E-29 1.7E-33 177.1 17.4 156 18-192 4-166 (199)
61 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 1.4E-28 3E-33 171.1 17.9 155 20-192 2-163 (166)
62 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 5.4E-29 1.2E-33 180.4 16.3 169 18-191 11-186 (232)
63 cd04131 Rnd Rnd subfamily. Th 100.0 2.4E-29 5.2E-34 176.5 14.0 166 21-191 2-174 (178)
64 KOG0394 Ras-related GTPase [Ge 100.0 1.3E-29 2.9E-34 170.7 11.9 160 17-191 6-176 (210)
65 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 9E-29 2E-33 172.6 16.7 154 22-191 2-163 (170)
66 cd04128 Spg1 Spg1p. Spg1p (se 100.0 8.6E-29 1.9E-33 174.4 16.7 157 21-192 1-165 (182)
67 cd01868 Rab11_like Rab11-like. 100.0 2.8E-28 6.2E-33 169.3 18.9 155 20-192 3-164 (165)
68 cd04111 Rab39 Rab39 subfamily. 100.0 1.1E-28 2.3E-33 177.7 17.2 156 20-192 2-165 (211)
69 cd04109 Rab28 Rab28 subfamily. 100.0 1.5E-28 3.2E-33 177.6 17.9 155 21-192 1-165 (215)
70 cd04106 Rab23_lke Rab23-like s 100.0 1.1E-28 2.4E-33 170.8 16.5 153 21-192 1-162 (162)
71 cd04140 ARHI_like ARHI subfami 100.0 7E-29 1.5E-33 172.4 15.4 154 21-191 2-163 (165)
72 cd04112 Rab26 Rab26 subfamily. 100.0 2.3E-28 5E-33 173.7 18.4 154 21-192 1-162 (191)
73 cd04144 Ras2 Ras2 subfamily. 100.0 7.3E-29 1.6E-33 176.1 15.6 154 22-192 1-162 (190)
74 cd04134 Rho3 Rho3 subfamily. 100.0 4E-29 8.7E-34 177.2 13.8 167 22-192 2-173 (189)
75 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 1E-28 2.2E-33 178.1 16.0 167 21-191 2-174 (222)
76 cd01861 Rab6 Rab6 subfamily. 100.0 4E-28 8.6E-33 167.8 18.2 154 21-192 1-161 (161)
77 cd04113 Rab4 Rab4 subfamily. 100.0 3.5E-28 7.5E-33 168.2 17.8 154 21-192 1-161 (161)
78 KOG0098 GTPase Rab2, small G p 100.0 9.4E-29 2E-33 166.9 14.1 155 17-192 3-167 (216)
79 cd04177 RSR1 RSR1 subgroup. R 100.0 1.2E-28 2.6E-33 171.7 15.2 157 20-192 1-163 (168)
80 cd01866 Rab2 Rab2 subfamily. 100.0 4.1E-28 8.8E-33 169.1 17.7 156 19-192 3-165 (168)
81 cd01863 Rab18 Rab18 subfamily. 100.0 4.1E-28 9E-33 167.8 17.4 155 21-192 1-161 (161)
82 cd04143 Rhes_like Rhes_like su 100.0 5.6E-28 1.2E-32 177.3 19.0 155 21-191 1-169 (247)
83 cd04124 RabL2 RabL2 subfamily. 100.0 1.3E-28 2.9E-33 170.4 14.6 152 21-192 1-157 (161)
84 cd04115 Rab33B_Rab33A Rab33B/R 100.0 6.5E-28 1.4E-32 168.3 17.9 158 20-193 2-169 (170)
85 KOG0080 GTPase Rab18, small G 100.0 6.6E-29 1.4E-33 163.7 11.8 160 16-192 7-173 (209)
86 cd04101 RabL4 RabL4 (Rab-like4 100.0 4.5E-28 9.7E-33 168.1 16.7 153 21-192 1-163 (164)
87 PLN03118 Rab family protein; P 100.0 4.9E-28 1.1E-32 174.5 17.2 159 17-192 11-176 (211)
88 smart00176 RAN Ran (Ras-relate 100.0 2.4E-28 5.2E-33 173.9 15.4 147 26-192 1-153 (200)
89 cd04125 RabA_like RabA-like su 100.0 2.7E-28 5.8E-33 172.9 15.3 154 21-192 1-161 (188)
90 cd01893 Miro1 Miro1 subfamily. 100.0 4.8E-28 1E-32 168.4 16.0 160 21-192 1-163 (166)
91 cd01862 Rab7 Rab7 subfamily. 100.0 9.1E-28 2E-32 167.7 17.1 155 21-191 1-165 (172)
92 cd04139 RalA_RalB RalA/RalB su 100.0 1.3E-27 2.7E-32 165.7 17.5 155 21-192 1-161 (164)
93 cd04132 Rho4_like Rho4-like su 100.0 9.3E-28 2E-32 170.0 16.6 154 21-192 1-166 (187)
94 cd04142 RRP22 RRP22 subfamily. 100.0 6.2E-28 1.3E-32 172.0 15.6 155 21-191 1-172 (198)
95 smart00175 RAB Rab subfamily o 100.0 2E-27 4.4E-32 164.7 17.7 154 21-192 1-161 (164)
96 PLN03110 Rab GTPase; Provision 100.0 1.6E-27 3.4E-32 172.3 17.0 157 18-192 10-173 (216)
97 cd01892 Miro2 Miro2 subfamily. 100.0 3E-27 6.4E-32 164.8 17.2 153 18-192 2-165 (169)
98 cd04118 Rab24 Rab24 subfamily. 100.0 2.2E-27 4.8E-32 168.9 16.5 153 21-192 1-165 (193)
99 PLN03108 Rab family protein; P 100.0 3.4E-27 7.4E-32 169.9 17.6 157 18-192 4-167 (210)
100 KOG0072 GTP-binding ADP-ribosy 100.0 1.3E-28 2.8E-33 159.5 9.0 168 14-193 12-179 (182)
101 cd00154 Rab Rab family. Rab G 100.0 5.1E-27 1.1E-31 161.3 17.6 152 21-190 1-159 (159)
102 cd04148 RGK RGK subfamily. Th 100.0 2.3E-27 4.9E-32 171.9 16.5 153 21-192 1-162 (221)
103 cd04147 Ras_dva Ras-dva subfam 100.0 3.6E-27 7.8E-32 168.4 17.3 155 22-192 1-162 (198)
104 cd04135 Tc10 TC10 subfamily. 100.0 1.2E-27 2.6E-32 167.5 14.5 169 21-192 1-173 (174)
105 cd04123 Rab21 Rab21 subfamily. 100.0 5E-27 1.1E-31 162.2 17.2 154 21-192 1-161 (162)
106 KOG0093 GTPase Rab3, small G p 100.0 1.3E-27 2.9E-32 155.4 13.2 154 18-192 19-182 (193)
107 KOG0074 GTP-binding ADP-ribosy 100.0 1.6E-27 3.4E-32 154.1 13.1 175 6-192 2-178 (185)
108 cd04146 RERG_RasL11_like RERG/ 100.0 1.5E-27 3.2E-32 165.8 14.0 154 22-192 1-163 (165)
109 cd04114 Rab30 Rab30 subfamily. 100.0 5.8E-27 1.3E-31 163.3 16.7 159 17-192 4-168 (169)
110 PF00071 Ras: Ras family; Int 100.0 2.7E-27 5.9E-32 163.8 14.9 153 22-192 1-160 (162)
111 smart00174 RHO Rho (Ras homolo 100.0 1.3E-27 2.7E-32 167.4 13.3 164 23-191 1-170 (174)
112 cd01873 RhoBTB RhoBTB subfamil 100.0 2.9E-27 6.2E-32 168.1 15.1 166 20-191 2-194 (195)
113 cd00157 Rho Rho (Ras homology) 100.0 1.8E-27 3.8E-32 166.1 13.3 154 21-190 1-170 (171)
114 cd00876 Ras Ras family. The R 100.0 1E-26 2.2E-31 160.4 16.8 154 22-192 1-160 (160)
115 KOG0079 GTP-binding protein H- 100.0 9.7E-28 2.1E-32 156.2 10.5 153 17-191 5-167 (198)
116 cd04137 RheB Rheb (Ras Homolog 100.0 1.8E-26 3.9E-31 162.5 17.7 155 21-192 2-162 (180)
117 cd01870 RhoA_like RhoA-like su 100.0 5.4E-27 1.2E-31 164.3 14.8 168 21-192 2-174 (175)
118 KOG0087 GTPase Rab11/YPT3, sma 100.0 2.7E-27 5.8E-32 163.1 12.8 159 16-192 10-175 (222)
119 cd04130 Wrch_1 Wrch-1 subfamil 100.0 8E-27 1.7E-31 163.3 15.2 165 21-190 1-171 (173)
120 KOG0091 GTPase Rab39, small G 99.9 8.2E-27 1.8E-31 154.3 13.8 158 18-192 6-172 (213)
121 KOG0095 GTPase Rab30, small G 99.9 8.4E-28 1.8E-32 156.8 8.2 158 17-191 4-167 (213)
122 KOG0086 GTPase Rab4, small G p 99.9 1.7E-26 3.7E-31 151.3 13.3 156 17-190 6-168 (214)
123 cd01897 NOG NOG1 is a nucleola 99.9 7.9E-26 1.7E-30 157.4 15.8 153 21-192 1-167 (168)
124 PTZ00132 GTP-binding nuclear p 99.9 2.2E-25 4.8E-30 161.1 17.7 157 17-192 6-167 (215)
125 cd01898 Obg Obg subfamily. Th 99.9 8.6E-26 1.9E-30 157.4 14.4 156 22-192 2-170 (170)
126 cd04129 Rho2 Rho2 subfamily. 99.9 6.3E-26 1.4E-30 160.6 13.6 167 21-192 2-172 (187)
127 KOG0076 GTP-binding ADP-ribosy 99.9 2.7E-26 5.8E-31 153.3 9.5 165 17-192 14-186 (197)
128 cd01878 HflX HflX subfamily. 99.9 1E-24 2.3E-29 156.4 16.4 153 18-192 39-204 (204)
129 cd01890 LepA LepA subfamily. 99.9 9.9E-25 2.1E-29 153.4 15.1 149 22-192 2-176 (179)
130 cd04105 SR_beta Signal recogni 99.9 4E-24 8.6E-29 153.0 17.4 169 22-190 2-202 (203)
131 KOG0088 GTPase Rab21, small G 99.9 9.9E-26 2.1E-30 148.5 8.3 157 17-191 10-173 (218)
132 cd04171 SelB SelB subfamily. 99.9 1.3E-24 2.8E-29 150.5 14.1 149 21-190 1-163 (164)
133 KOG0081 GTPase Rab27, small G 99.9 4.8E-26 1E-30 150.1 6.2 155 17-191 6-179 (219)
134 PRK15494 era GTPase Era; Provi 99.9 3.5E-24 7.5E-29 163.9 17.1 153 19-192 51-215 (339)
135 KOG0395 Ras-related GTPase [Ge 99.9 3.1E-24 6.8E-29 151.8 13.8 157 19-192 2-164 (196)
136 PRK12299 obgE GTPase CgtA; Rev 99.9 4E-24 8.6E-29 162.7 14.8 156 21-192 159-327 (335)
137 TIGR02528 EutP ethanolamine ut 99.9 1.1E-24 2.5E-29 147.6 10.3 134 22-189 2-141 (142)
138 cd04102 RabL3 RabL3 (Rab-like3 99.9 1.6E-23 3.4E-28 149.2 16.4 115 21-135 1-143 (202)
139 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 9.2E-24 2E-28 146.9 14.9 157 22-191 2-164 (168)
140 TIGR03156 GTP_HflX GTP-binding 99.9 1.8E-23 3.9E-28 160.3 17.6 151 19-192 188-351 (351)
141 PF02421 FeoB_N: Ferrous iron 99.9 5.4E-24 1.2E-28 144.2 12.6 141 21-188 1-156 (156)
142 cd00881 GTP_translation_factor 99.9 2.4E-23 5.2E-28 147.4 16.1 163 22-192 1-186 (189)
143 TIGR00436 era GTP-binding prot 99.9 1.7E-23 3.7E-28 156.0 15.8 150 22-192 2-163 (270)
144 PRK04213 GTP-binding protein; 99.9 2.6E-24 5.6E-29 154.0 10.6 158 18-192 7-191 (201)
145 cd00882 Ras_like_GTPase Ras-li 99.9 2.9E-23 6.2E-28 141.3 14.8 150 25-190 1-157 (157)
146 TIGR00231 small_GTP small GTP- 99.9 4.8E-23 1E-27 141.3 16.0 153 20-189 1-160 (161)
147 cd04164 trmE TrmE (MnmE, ThdF, 99.9 3.6E-23 7.7E-28 142.2 15.2 144 21-193 2-157 (157)
148 KOG0393 Ras-related small GTPa 99.9 4E-25 8.6E-30 153.4 5.3 169 19-191 3-177 (198)
149 cd01881 Obg_like The Obg-like 99.9 1E-23 2.2E-28 147.7 12.5 153 25-192 1-176 (176)
150 TIGR02729 Obg_CgtA Obg family 99.9 2.5E-23 5.3E-28 158.2 15.5 157 21-193 158-329 (329)
151 KOG0097 GTPase Rab14, small G 99.9 4.1E-23 8.8E-28 133.9 13.9 156 17-190 8-170 (215)
152 cd01879 FeoB Ferrous iron tran 99.9 3.5E-23 7.6E-28 142.5 12.9 146 25-193 1-157 (158)
153 cd01889 SelB_euk SelB subfamil 99.9 7.8E-23 1.7E-27 145.4 15.0 157 21-192 1-185 (192)
154 KOG0083 GTPase Rab26/Rab37, sm 99.9 4.8E-25 1E-29 141.4 3.0 148 24-192 1-159 (192)
155 PRK03003 GTP-binding protein D 99.9 8.4E-23 1.8E-27 162.9 16.5 157 19-192 210-381 (472)
156 PRK03003 GTP-binding protein D 99.9 1.2E-22 2.7E-27 162.0 17.2 150 19-192 37-198 (472)
157 PRK05291 trmE tRNA modificatio 99.9 8.5E-23 1.9E-27 161.5 15.9 146 17-192 212-369 (449)
158 PRK11058 GTPase HflX; Provisio 99.9 2.1E-22 4.6E-27 157.7 17.1 151 21-192 198-361 (426)
159 cd01894 EngA1 EngA1 subfamily. 99.9 1.1E-22 2.4E-27 139.8 13.3 145 24-192 1-157 (157)
160 cd01891 TypA_BipA TypA (tyrosi 99.9 3.9E-22 8.4E-27 142.0 16.2 145 22-182 4-171 (194)
161 PRK15467 ethanolamine utilizat 99.9 1.2E-22 2.6E-27 139.9 12.9 139 22-192 3-146 (158)
162 cd04163 Era Era subfamily. Er 99.9 3E-22 6.4E-27 138.7 15.0 154 19-192 2-168 (168)
163 TIGR03594 GTPase_EngA ribosome 99.9 2E-22 4.3E-27 159.7 14.9 156 19-191 171-342 (429)
164 TIGR00450 mnmE_trmE_thdF tRNA 99.9 4.5E-22 9.8E-27 156.6 16.7 148 17-192 200-359 (442)
165 PF00009 GTP_EFTU: Elongation 99.9 2.5E-22 5.5E-27 142.3 13.8 162 19-192 2-186 (188)
166 cd01895 EngA2 EngA2 subfamily. 99.9 1.1E-21 2.4E-26 136.8 16.8 155 20-191 2-173 (174)
167 COG1100 GTPase SAR1 and relate 99.9 3.3E-22 7.1E-27 145.0 14.4 172 19-192 4-184 (219)
168 PLN00023 GTP-binding protein; 99.9 3.5E-22 7.6E-27 149.2 14.7 119 17-135 18-165 (334)
169 COG1159 Era GTPase [General fu 99.9 5.2E-22 1.1E-26 144.7 14.7 155 19-193 5-172 (298)
170 PRK00089 era GTPase Era; Revie 99.9 6.4E-22 1.4E-26 149.3 15.3 152 21-192 6-170 (292)
171 cd01888 eIF2_gamma eIF2-gamma 99.9 3.5E-22 7.5E-27 143.1 12.7 159 21-192 1-198 (203)
172 PRK12296 obgE GTPase CgtA; Rev 99.9 5.3E-22 1.2E-26 156.6 14.6 155 21-192 160-339 (500)
173 COG2229 Predicted GTPase [Gene 99.9 2.5E-21 5.3E-26 131.3 14.9 158 15-191 5-176 (187)
174 TIGR03594 GTPase_EngA ribosome 99.9 2.2E-21 4.7E-26 153.8 16.4 147 22-192 1-159 (429)
175 TIGR01393 lepA GTP-binding pro 99.9 2.5E-21 5.5E-26 157.4 16.9 149 22-192 5-179 (595)
176 KOG0090 Signal recognition par 99.9 9.3E-22 2E-26 136.2 11.9 171 18-192 36-238 (238)
177 PRK12297 obgE GTPase CgtA; Rev 99.9 2.2E-21 4.9E-26 151.2 15.5 152 22-192 160-326 (424)
178 TIGR00487 IF-2 translation ini 99.9 2.7E-21 5.8E-26 156.6 16.4 159 18-190 85-247 (587)
179 PRK00454 engB GTP-binding prot 99.9 2E-21 4.4E-26 138.5 13.6 159 17-193 21-194 (196)
180 PRK00093 GTP-binding protein D 99.9 3.3E-21 7.1E-26 152.9 16.2 146 21-190 2-159 (435)
181 COG1160 Predicted GTPases [Gen 99.9 3.1E-21 6.7E-26 147.9 14.9 148 21-192 4-164 (444)
182 PRK05306 infB translation init 99.9 1.5E-21 3.2E-26 161.6 14.2 160 17-190 287-449 (787)
183 TIGR03598 GTPase_YsxC ribosome 99.9 3.1E-21 6.6E-26 135.7 13.2 144 18-182 16-179 (179)
184 PF08477 Miro: Miro-like prote 99.9 4.8E-22 1E-26 130.7 8.3 109 22-132 1-119 (119)
185 PRK12298 obgE GTPase CgtA; Rev 99.9 4.7E-21 1E-25 148.6 14.7 157 22-192 161-332 (390)
186 cd00880 Era_like Era (E. coli 99.9 3E-21 6.6E-26 132.5 12.0 151 25-192 1-163 (163)
187 PRK09518 bifunctional cytidyla 99.9 6.5E-21 1.4E-25 158.6 16.0 157 19-192 449-620 (712)
188 PTZ00099 rab6; Provisional 99.9 1.1E-20 2.4E-25 132.2 14.0 127 48-192 9-141 (176)
189 CHL00189 infB translation init 99.9 1.7E-20 3.6E-25 154.2 16.9 160 18-191 242-408 (742)
190 PRK00093 GTP-binding protein D 99.9 7.8E-21 1.7E-25 150.8 14.6 156 19-191 172-342 (435)
191 PF10662 PduV-EutP: Ethanolami 99.9 6.9E-21 1.5E-25 126.4 11.3 134 22-189 3-142 (143)
192 COG0486 ThdF Predicted GTPase 99.9 2.5E-20 5.5E-25 143.3 15.8 150 17-192 214-375 (454)
193 PRK09518 bifunctional cytidyla 99.9 1.5E-20 3.2E-25 156.5 15.7 149 20-192 275-435 (712)
194 PRK05433 GTP-binding protein L 99.9 4.2E-20 9.1E-25 150.4 17.8 150 21-192 8-183 (600)
195 TIGR00475 selB selenocysteine- 99.9 7.7E-21 1.7E-25 154.4 13.3 155 21-192 1-165 (581)
196 KOG4252 GTP-binding protein [S 99.9 2.8E-22 6E-27 134.9 3.2 167 4-192 4-180 (246)
197 PRK09554 feoB ferrous iron tra 99.8 2.1E-20 4.5E-25 155.4 14.1 150 19-191 2-166 (772)
198 TIGR00491 aIF-2 translation in 99.8 5.2E-20 1.1E-24 148.9 14.9 163 20-190 4-213 (590)
199 cd01896 DRG The developmentall 99.8 2.3E-19 4.9E-24 130.9 16.8 149 22-192 2-225 (233)
200 COG0218 Predicted GTPase [Gene 99.8 1.9E-19 4.2E-24 124.7 15.1 155 19-192 23-196 (200)
201 COG1160 Predicted GTPases [Gen 99.8 1.2E-19 2.6E-24 139.2 14.8 156 19-191 177-349 (444)
202 PRK12317 elongation factor 1-a 99.8 7.4E-20 1.6E-24 144.6 13.7 153 17-183 3-195 (425)
203 cd04166 CysN_ATPS CysN_ATPS su 99.8 2.7E-19 5.9E-24 128.6 14.9 148 22-183 1-184 (208)
204 cd04165 GTPBP1_like GTPBP1-lik 99.8 3.2E-19 7E-24 129.1 15.1 164 22-190 1-220 (224)
205 TIGR03680 eif2g_arch translati 99.8 1E-19 2.3E-24 142.6 13.4 162 18-192 2-195 (406)
206 cd01883 EF1_alpha Eukaryotic e 99.8 2.2E-19 4.7E-24 130.1 14.1 150 22-182 1-194 (219)
207 TIGR00483 EF-1_alpha translati 99.8 4.8E-20 1E-24 145.6 11.4 156 17-183 4-197 (426)
208 TIGR00437 feoB ferrous iron tr 99.8 3.8E-20 8.3E-25 150.5 10.9 142 27-191 1-153 (591)
209 cd01884 EF_Tu EF-Tu subfamily. 99.8 9.8E-19 2.1E-23 124.1 15.8 149 20-181 2-171 (195)
210 cd04168 TetM_like Tet(M)-like 99.8 5E-19 1.1E-23 129.3 14.7 166 22-192 1-234 (237)
211 TIGR01394 TypA_BipA GTP-bindin 99.8 4.4E-19 9.6E-24 144.1 15.5 156 22-192 3-190 (594)
212 PRK04000 translation initiatio 99.8 2.5E-19 5.5E-24 140.4 13.3 163 17-192 6-200 (411)
213 cd04169 RF3 RF3 subfamily. Pe 99.8 1.7E-18 3.6E-23 128.5 16.4 122 22-148 4-153 (267)
214 cd01876 YihA_EngB The YihA (En 99.8 9.7E-19 2.1E-23 121.3 14.2 151 23-192 2-170 (170)
215 PF09439 SRPRB: Signal recogni 99.8 5.9E-20 1.3E-24 127.2 7.8 127 20-147 3-138 (181)
216 PRK10218 GTP-binding protein; 99.8 1E-18 2.2E-23 141.9 15.0 157 21-192 6-194 (607)
217 KOG1707 Predicted Ras related/ 99.8 1.7E-19 3.7E-24 141.1 9.4 159 16-192 5-174 (625)
218 COG1084 Predicted GTPase [Gene 99.8 3.7E-18 7.9E-23 125.9 15.8 169 4-191 148-334 (346)
219 KOG1489 Predicted GTP-binding 99.8 9.2E-19 2E-23 128.2 12.1 152 21-191 197-365 (366)
220 KOG3883 Ras family small GTPas 99.8 2.8E-18 6E-23 112.8 13.0 160 18-192 7-174 (198)
221 PRK10512 selenocysteinyl-tRNA- 99.8 1.5E-18 3.3E-23 141.6 13.7 156 21-191 1-164 (614)
222 COG0370 FeoB Fe2+ transport sy 99.8 3E-18 6.5E-23 137.1 14.6 146 19-191 2-162 (653)
223 PRK04004 translation initiatio 99.8 6.9E-18 1.5E-22 137.1 16.3 164 19-190 5-215 (586)
224 COG2262 HflX GTPases [General 99.8 2E-17 4.4E-22 125.4 17.4 154 17-192 189-355 (411)
225 KOG1673 Ras GTPases [General f 99.8 3.9E-19 8.4E-24 117.1 7.0 160 18-192 18-185 (205)
226 PRK12736 elongation factor Tu; 99.8 7.8E-18 1.7E-22 131.6 15.7 164 16-192 8-200 (394)
227 COG0532 InfB Translation initi 99.8 3.9E-18 8.4E-23 133.0 13.4 157 19-189 4-166 (509)
228 KOG1423 Ras-like GTPase ERA [C 99.8 1.6E-17 3.5E-22 121.2 14.9 167 18-192 70-270 (379)
229 PRK00741 prfC peptide chain re 99.8 4.7E-18 1E-22 136.5 13.4 125 19-148 9-161 (526)
230 PRK12735 elongation factor Tu; 99.8 1.9E-17 4.1E-22 129.5 15.3 163 16-191 8-201 (396)
231 PLN03126 Elongation factor Tu; 99.8 6.7E-17 1.4E-21 128.4 16.4 156 11-179 72-248 (478)
232 cd04167 Snu114p Snu114p subfam 99.8 4.4E-17 9.6E-22 117.6 14.1 108 22-134 2-136 (213)
233 cd04170 EF-G_bact Elongation f 99.8 2.8E-17 6E-22 122.6 13.2 110 22-136 1-131 (268)
234 cd01886 EF-G Elongation factor 99.8 7.2E-17 1.6E-21 119.9 15.3 123 22-149 1-147 (270)
235 PTZ00141 elongation factor 1- 99.7 4.5E-17 9.8E-22 128.8 14.2 155 17-183 4-203 (446)
236 PRK05124 cysN sulfate adenylyl 99.7 5.5E-17 1.2E-21 129.2 14.6 155 17-184 24-216 (474)
237 PLN00043 elongation factor 1-a 99.7 5.7E-17 1.2E-21 128.2 14.5 154 17-183 4-203 (447)
238 KOG0096 GTPase Ran/TC4/GSP1 (n 99.7 1.3E-17 2.7E-22 113.5 8.1 155 19-192 9-168 (216)
239 CHL00071 tufA elongation facto 99.7 1.4E-16 3E-21 125.2 15.2 151 17-180 9-180 (409)
240 PRK13351 elongation factor G; 99.7 1.5E-16 3.3E-21 132.5 16.2 114 18-136 6-140 (687)
241 cd04104 p47_IIGP_like p47 (47- 99.7 4.2E-17 9.1E-22 116.3 10.6 160 20-192 1-183 (197)
242 TIGR00485 EF-Tu translation el 99.7 1.5E-16 3.3E-21 124.5 14.6 160 17-189 9-197 (394)
243 PRK00049 elongation factor Tu; 99.7 1.1E-16 2.5E-21 125.2 13.7 163 16-191 8-201 (396)
244 KOG0462 Elongation factor-type 99.7 3.7E-17 8.1E-22 127.4 10.8 152 22-192 62-234 (650)
245 KOG1532 GTPase XAB1, interacts 99.7 1.3E-17 2.8E-22 120.1 7.4 178 12-192 11-263 (366)
246 PRK05506 bifunctional sulfate 99.7 1.4E-16 3.1E-21 131.4 14.7 153 17-183 21-211 (632)
247 TIGR02034 CysN sulfate adenyly 99.7 8.2E-17 1.8E-21 126.3 12.5 149 21-183 1-187 (406)
248 KOG4423 GTP-binding protein-li 99.7 2.6E-19 5.6E-24 121.4 -1.9 161 17-192 22-193 (229)
249 PTZ00327 eukaryotic translatio 99.7 2.2E-16 4.9E-21 124.7 13.3 163 17-192 31-232 (460)
250 PF01926 MMR_HSR1: 50S ribosom 99.7 6.3E-16 1.4E-20 101.1 13.3 103 22-130 1-116 (116)
251 smart00275 G_alpha G protein a 99.7 6.9E-16 1.5E-20 118.2 15.2 134 51-191 171-332 (342)
252 cd01899 Ygr210 Ygr210 subfamil 99.7 7.2E-16 1.6E-20 116.7 15.1 76 23-98 1-110 (318)
253 TIGR00503 prfC peptide chain r 99.7 3.6E-16 7.9E-21 125.7 13.9 125 19-148 10-162 (527)
254 KOG1191 Mitochondrial GTPase [ 99.7 4.6E-16 9.9E-21 120.1 13.7 166 14-192 262-449 (531)
255 cd01885 EF2 EF2 (for archaea a 99.7 5.6E-16 1.2E-20 111.9 13.4 108 22-134 2-138 (222)
256 PLN03127 Elongation factor Tu; 99.7 1.3E-15 2.9E-20 120.4 16.6 163 17-192 58-251 (447)
257 COG3596 Predicted GTPase [Gene 99.7 3.3E-17 7E-22 118.3 6.0 173 17-192 36-221 (296)
258 COG1163 DRG Predicted GTPase [ 99.7 6.4E-16 1.4E-20 113.9 12.4 151 20-192 63-288 (365)
259 PF04670 Gtr1_RagA: Gtr1/RagA 99.7 6.5E-17 1.4E-21 116.8 7.1 162 22-191 1-174 (232)
260 KOG1145 Mitochondrial translat 99.7 1E-15 2.2E-20 119.5 14.0 159 18-190 151-313 (683)
261 cd01852 AIG1 AIG1 (avrRpt2-ind 99.7 1.3E-15 2.8E-20 108.6 12.9 163 21-192 1-183 (196)
262 PRK12739 elongation factor G; 99.7 3.2E-15 7E-20 124.5 16.4 113 19-136 7-140 (691)
263 COG0481 LepA Membrane GTPase L 99.7 3.7E-16 8.1E-21 120.2 9.4 149 22-192 11-185 (603)
264 cd00066 G-alpha G protein alph 99.7 2.2E-15 4.8E-20 114.6 13.0 136 50-192 147-310 (317)
265 COG4917 EutP Ethanolamine util 99.7 6.4E-16 1.4E-20 98.4 8.3 138 21-190 2-143 (148)
266 COG0536 Obg Predicted GTPase [ 99.7 1E-15 2.2E-20 113.6 10.5 154 22-192 161-332 (369)
267 PRK00007 elongation factor G; 99.7 7.4E-15 1.6E-19 122.3 16.8 114 19-137 9-143 (693)
268 COG5256 TEF1 Translation elong 99.7 1E-15 2.3E-20 116.2 10.4 153 16-182 3-200 (428)
269 TIGR00484 EF-G translation elo 99.7 4.3E-15 9.3E-20 123.7 14.6 113 20-137 10-143 (689)
270 PRK09866 hypothetical protein; 99.6 2.9E-14 6.4E-19 114.4 16.1 114 64-190 230-350 (741)
271 PRK12740 elongation factor G; 99.6 2.1E-14 4.4E-19 119.6 15.7 106 26-136 1-127 (668)
272 PRK13768 GTPase; Provisional 99.6 2.1E-14 4.6E-19 106.0 11.2 128 64-192 97-246 (253)
273 PRK09602 translation-associate 99.6 7.7E-14 1.7E-18 108.7 14.7 78 21-98 2-113 (396)
274 KOG0082 G-protein alpha subuni 99.6 7.9E-14 1.7E-18 105.3 13.9 137 49-192 180-343 (354)
275 KOG1490 GTP-binding protein CR 99.6 5.4E-15 1.2E-19 114.5 7.7 174 4-191 148-339 (620)
276 TIGR00490 aEF-2 translation el 99.6 5E-14 1.1E-18 117.7 13.5 125 3-135 5-152 (720)
277 PRK09435 membrane ATPase/prote 99.6 5.5E-14 1.2E-18 106.7 12.4 108 63-192 148-259 (332)
278 PRK14845 translation initiatio 99.6 7.7E-14 1.7E-18 118.7 14.4 152 31-190 472-670 (1049)
279 cd01850 CDC_Septin CDC/Septin. 99.6 4.4E-14 9.6E-19 105.5 11.3 110 20-135 4-157 (276)
280 PF03029 ATP_bind_1: Conserved 99.5 6.6E-15 1.4E-19 107.4 4.1 123 65-192 92-236 (238)
281 COG1703 ArgK Putative periplas 99.5 1.7E-13 3.7E-18 100.4 10.8 159 14-192 45-253 (323)
282 PF03308 ArgK: ArgK protein; 99.5 4.5E-14 9.8E-19 102.0 7.1 107 63-191 121-228 (266)
283 TIGR00101 ureG urease accessor 99.5 4.2E-13 9.2E-18 95.6 11.7 102 64-192 92-195 (199)
284 PRK07560 elongation factor EF- 99.5 6.2E-13 1.3E-17 111.5 14.3 124 3-134 6-152 (731)
285 cd01882 BMS1 Bms1. Bms1 is an 99.5 5.4E-13 1.2E-17 97.0 12.0 146 17-181 36-184 (225)
286 cd01853 Toc34_like Toc34-like 99.5 8.4E-13 1.8E-17 97.0 13.1 118 17-136 28-164 (249)
287 KOG3905 Dynein light intermedi 99.5 2.4E-13 5.2E-18 100.5 9.7 162 18-192 50-289 (473)
288 PLN00116 translation elongatio 99.5 1.3E-12 2.8E-17 110.9 12.9 123 4-134 6-163 (843)
289 TIGR00991 3a0901s02IAP34 GTP-b 99.5 5.1E-12 1.1E-16 94.5 14.4 125 18-144 36-178 (313)
290 PF04548 AIG1: AIG1 family; I 99.4 5.7E-12 1.2E-16 90.8 13.8 119 21-141 1-136 (212)
291 COG1217 TypA Predicted membran 99.4 8.6E-13 1.9E-17 101.7 9.8 160 21-192 6-194 (603)
292 PTZ00416 elongation factor 2; 99.4 1.7E-12 3.8E-17 110.0 12.7 122 5-134 7-157 (836)
293 PTZ00258 GTP-binding protein; 99.4 7.9E-12 1.7E-16 96.7 14.4 86 13-98 14-126 (390)
294 COG2895 CysN GTPases - Sulfate 99.4 1.5E-12 3.1E-17 97.3 9.8 150 17-182 3-192 (431)
295 COG5257 GCD11 Translation init 99.4 7.4E-13 1.6E-17 97.7 8.1 163 17-193 7-202 (415)
296 KOG0458 Elongation factor 1 al 99.4 3.2E-13 6.9E-18 106.4 6.2 154 17-181 174-370 (603)
297 TIGR00750 lao LAO/AO transport 99.4 5.9E-12 1.3E-16 95.3 12.7 109 63-191 126-236 (300)
298 PF00503 G-alpha: G-protein al 99.4 3E-12 6.5E-17 100.4 10.0 133 53-192 224-389 (389)
299 COG4108 PrfC Peptide chain rel 99.4 3E-12 6.4E-17 98.1 9.3 124 22-150 14-165 (528)
300 COG3276 SelB Selenocysteine-sp 99.4 5.6E-12 1.2E-16 96.8 10.8 154 22-192 2-161 (447)
301 TIGR00073 hypB hydrogenase acc 99.4 2.2E-12 4.7E-17 92.7 7.9 58 121-193 148-207 (207)
302 COG0378 HypB Ni2+-binding GTPa 99.4 8.2E-13 1.8E-17 91.3 5.1 79 90-192 120-200 (202)
303 PRK10463 hydrogenase nickel in 99.3 1.2E-12 2.7E-17 97.0 5.3 56 121-191 230-287 (290)
304 PF05049 IIGP: Interferon-indu 99.3 5.7E-12 1.2E-16 96.6 8.9 169 6-191 23-216 (376)
305 PF05783 DLIC: Dynein light in 99.3 8E-12 1.7E-16 98.9 9.5 163 17-192 22-263 (472)
306 KOG1144 Translation initiation 99.3 4.2E-12 9E-17 102.7 7.8 163 19-191 474-685 (1064)
307 PF00735 Septin: Septin; Inte 99.3 2.7E-11 5.8E-16 90.6 10.0 112 20-136 4-157 (281)
308 COG0480 FusA Translation elong 99.3 2.2E-11 4.7E-16 100.5 10.3 125 19-148 9-158 (697)
309 TIGR00157 ribosome small subun 99.3 9.5E-12 2.1E-16 91.4 7.3 96 75-191 24-121 (245)
310 KOG0410 Predicted GTP binding 99.3 2.6E-11 5.7E-16 89.8 9.2 149 17-192 175-340 (410)
311 KOG0461 Selenocysteine-specifi 99.3 1.4E-10 3.1E-15 86.7 11.8 161 17-192 4-192 (522)
312 PF00350 Dynamin_N: Dynamin fa 99.3 7E-11 1.5E-15 82.1 9.7 64 64-131 101-168 (168)
313 KOG3886 GTP-binding protein [S 99.3 2.2E-11 4.8E-16 86.1 7.1 119 21-141 5-136 (295)
314 COG0012 Predicted GTPase, prob 99.2 4.8E-10 1E-14 85.1 13.5 79 20-98 2-108 (372)
315 smart00053 DYNc Dynamin, GTPas 99.2 1.3E-09 2.7E-14 79.6 15.3 115 18-136 24-207 (240)
316 smart00010 small_GTPase Small 99.2 1.6E-11 3.5E-16 80.8 5.1 88 21-134 1-90 (124)
317 TIGR02836 spore_IV_A stage IV 99.2 9.1E-10 2E-14 84.9 14.1 126 2-133 2-192 (492)
318 cd01900 YchF YchF subfamily. 99.2 2.2E-10 4.7E-15 85.1 8.4 76 23-98 1-103 (274)
319 KOG0085 G protein subunit Galp 99.1 5E-11 1.1E-15 84.6 4.7 142 50-191 185-347 (359)
320 COG5258 GTPBP1 GTPase [General 99.1 1.1E-10 2.4E-15 88.4 6.7 168 16-188 113-334 (527)
321 COG0050 TufB GTPases - transla 99.1 8.1E-10 1.8E-14 81.1 10.5 158 15-192 7-200 (394)
322 TIGR00993 3a0901s04IAP86 chlor 99.1 1.8E-09 3.9E-14 87.7 13.4 115 19-135 117-250 (763)
323 PRK09601 GTP-binding protein Y 99.1 8.4E-10 1.8E-14 84.7 10.1 78 21-98 3-107 (364)
324 KOG0468 U5 snRNP-specific prot 99.1 5.3E-10 1.2E-14 89.9 9.1 113 17-134 125-262 (971)
325 KOG0099 G protein subunit Galp 99.1 7.3E-10 1.6E-14 80.0 7.2 82 53-134 191-282 (379)
326 cd01858 NGP_1 NGP-1. Autoanti 99.0 1E-09 2.2E-14 75.5 7.6 69 4-73 87-156 (157)
327 cd01855 YqeH YqeH. YqeH is an 99.0 9.2E-10 2E-14 78.1 7.5 102 74-192 21-124 (190)
328 cd01859 MJ1464 MJ1464. This f 99.0 7.9E-10 1.7E-14 75.9 6.2 93 78-192 3-95 (156)
329 KOG1707 Predicted Ras related/ 99.0 1.1E-08 2.5E-13 81.2 13.2 129 17-150 422-560 (625)
330 COG5019 CDC3 Septin family pro 99.0 7.9E-09 1.7E-13 78.2 11.8 117 18-140 21-181 (373)
331 KOG2486 Predicted GTPase [Gene 99.0 1.4E-09 3.1E-14 79.1 7.3 161 18-189 134-312 (320)
332 KOG0705 GTPase-activating prot 99.0 8.6E-10 1.9E-14 86.9 6.3 156 16-191 26-187 (749)
333 cd04178 Nucleostemin_like Nucl 99.0 2.1E-09 4.5E-14 74.8 7.4 57 17-74 114-172 (172)
334 KOG1486 GTP-binding protein DR 99.0 3.2E-08 6.8E-13 71.4 12.6 86 19-104 61-156 (364)
335 KOG2655 Septin family protein 99.0 6.8E-09 1.5E-13 79.0 9.6 115 18-138 19-175 (366)
336 PRK12289 GTPase RsgA; Reviewed 98.9 3.7E-09 8E-14 81.4 8.0 88 83-191 85-173 (352)
337 cd01858 NGP_1 NGP-1. Autoanti 98.9 3.3E-09 7E-14 73.0 6.7 89 84-191 5-93 (157)
338 KOG0463 GTP-binding protein GP 98.9 4E-09 8.6E-14 80.1 6.5 165 19-188 132-353 (641)
339 KOG1954 Endocytosis/signaling 98.9 3.9E-08 8.5E-13 74.5 10.6 122 19-147 57-234 (532)
340 cd01854 YjeQ_engC YjeQ/EngC. 98.9 8.9E-09 1.9E-13 77.6 7.1 88 82-190 73-161 (287)
341 KOG1143 Predicted translation 98.8 2E-08 4.3E-13 76.2 8.5 165 19-188 166-383 (591)
342 KOG1491 Predicted GTP-binding 98.8 1.9E-08 4.1E-13 75.3 7.9 84 15-98 15-125 (391)
343 KOG3887 Predicted small GTPase 98.8 2.7E-08 5.9E-13 71.3 8.1 115 21-136 28-150 (347)
344 cd01857 HSR1_MMR1 HSR1/MMR1. 98.8 1.6E-08 3.4E-13 68.3 6.6 52 22-74 85-138 (141)
345 PRK00098 GTPase RsgA; Reviewed 98.8 1.3E-08 2.7E-13 77.2 6.1 86 84-190 77-164 (298)
346 PRK09563 rbgA GTPase YlqF; Rev 98.8 2.8E-08 6.1E-13 74.9 7.9 56 18-74 119-176 (287)
347 cd01859 MJ1464 MJ1464. This f 98.8 4.6E-08 1E-12 67.1 8.2 57 18-74 99-156 (156)
348 PRK12288 GTPase RsgA; Reviewed 98.8 3.1E-08 6.8E-13 76.3 7.9 89 85-191 118-206 (347)
349 TIGR03596 GTPase_YlqF ribosome 98.7 3.8E-08 8.2E-13 73.8 7.2 56 18-74 116-173 (276)
350 KOG0465 Mitochondrial elongati 98.7 3.1E-08 6.8E-13 79.2 7.0 115 19-138 38-173 (721)
351 KOG1547 Septin CDC10 and relat 98.7 1.1E-07 2.3E-12 68.2 8.9 119 17-141 43-204 (336)
352 cd01855 YqeH YqeH. YqeH is an 98.7 3.7E-08 8.1E-13 69.8 6.4 54 19-73 126-189 (190)
353 cd01849 YlqF_related_GTPase Yl 98.7 4.2E-08 9.1E-13 67.3 6.3 81 89-190 1-82 (155)
354 TIGR00092 GTP-binding protein 98.7 1.1E-07 2.3E-12 73.3 9.1 78 21-98 3-108 (368)
355 KOG0459 Polypeptide release fa 98.7 1.1E-08 2.4E-13 78.1 3.4 162 17-185 76-278 (501)
356 cd01856 YlqF YlqF. Proteins o 98.7 4.3E-08 9.4E-13 68.3 6.2 97 71-191 2-99 (171)
357 KOG0464 Elongation factor G [T 98.7 3.1E-09 6.7E-14 81.6 0.1 124 21-149 38-185 (753)
358 TIGR03596 GTPase_YlqF ribosome 98.7 4.9E-08 1.1E-12 73.2 6.2 97 71-191 4-101 (276)
359 KOG0447 Dynamin-like GTP bindi 98.7 1.6E-06 3.4E-11 69.2 14.5 84 64-150 412-510 (980)
360 KOG0460 Mitochondrial translat 98.7 1.5E-07 3.2E-12 70.7 8.1 119 16-138 50-187 (449)
361 TIGR03597 GTPase_YqeH ribosome 98.7 4.6E-08 1E-12 76.0 5.7 101 74-191 50-151 (360)
362 cd01856 YlqF YlqF. Proteins o 98.7 7.5E-08 1.6E-12 67.2 6.2 56 18-74 113-170 (171)
363 KOG1487 GTP-binding protein DR 98.7 7.7E-08 1.7E-12 69.7 6.3 84 21-104 60-153 (358)
364 COG5192 BMS1 GTP-binding prote 98.6 4.5E-07 9.7E-12 72.5 10.8 143 18-178 67-211 (1077)
365 TIGR03348 VI_IcmF type VI secr 98.6 2.1E-07 4.5E-12 82.3 9.9 112 21-135 112-257 (1169)
366 COG1161 Predicted GTPases [Gen 98.6 1.1E-07 2.4E-12 72.7 6.9 57 18-74 130-187 (322)
367 COG1618 Predicted nucleotide k 98.6 1.6E-06 3.4E-11 58.6 11.1 109 19-133 4-142 (179)
368 cd03112 CobW_like The function 98.6 2.8E-07 6.1E-12 63.4 7.9 22 22-43 2-23 (158)
369 cd01857 HSR1_MMR1 HSR1/MMR1. 98.6 1.1E-07 2.4E-12 64.1 5.6 51 82-135 6-56 (141)
370 KOG0466 Translation initiation 98.6 3.1E-08 6.7E-13 73.3 2.3 161 16-192 34-240 (466)
371 cd01849 YlqF_related_GTPase Yl 98.6 2.2E-07 4.7E-12 63.7 6.4 54 18-74 98-155 (155)
372 PRK14974 cell division protein 98.6 1.1E-06 2.4E-11 67.4 10.7 66 63-135 222-293 (336)
373 PRK09563 rbgA GTPase YlqF; Rev 98.5 1.6E-07 3.5E-12 70.9 5.4 97 71-191 7-104 (287)
374 cd01851 GBP Guanylate-binding 98.5 5.6E-06 1.2E-10 60.2 13.2 82 19-100 6-104 (224)
375 PF03193 DUF258: Protein of un 98.5 2E-07 4.3E-12 63.7 4.7 57 21-78 36-101 (161)
376 PRK10416 signal recognition pa 98.5 2.3E-06 5E-11 65.3 10.5 23 19-41 113-135 (318)
377 TIGR00064 ftsY signal recognit 98.5 3E-06 6.5E-11 63.4 10.8 67 62-135 153-231 (272)
378 KOG0467 Translation elongation 98.5 7E-07 1.5E-11 73.3 7.4 110 20-134 9-137 (887)
379 KOG0448 Mitofusin 1 GTPase, in 98.4 1E-05 2.2E-10 66.1 12.6 114 17-135 106-275 (749)
380 TIGR03597 GTPase_YqeH ribosome 98.4 6.1E-07 1.3E-11 69.8 5.5 56 21-76 155-216 (360)
381 PRK01889 GTPase RsgA; Reviewed 98.4 2.6E-06 5.6E-11 66.2 8.5 84 85-189 110-193 (356)
382 PRK12289 GTPase RsgA; Reviewed 98.3 9.5E-07 2.1E-11 68.2 5.6 54 22-76 174-236 (352)
383 cd03114 ArgK-like The function 98.3 1.4E-06 3.1E-11 59.2 5.6 58 63-132 91-148 (148)
384 PRK13796 GTPase YqeH; Provisio 98.3 5.3E-06 1.2E-10 64.7 9.2 99 76-191 58-157 (365)
385 PRK12288 GTPase RsgA; Reviewed 98.3 8.7E-07 1.9E-11 68.4 4.8 56 22-78 207-271 (347)
386 PRK13796 GTPase YqeH; Provisio 98.3 1.6E-06 3.5E-11 67.6 6.2 55 20-75 160-221 (365)
387 TIGR01425 SRP54_euk signal rec 98.3 3.3E-06 7.1E-11 66.6 7.9 65 63-134 182-252 (429)
388 COG0523 Putative GTPases (G3E 98.3 2.3E-05 4.9E-10 59.9 11.8 120 22-147 3-171 (323)
389 TIGR00157 ribosome small subun 98.3 1.3E-06 2.8E-11 64.4 4.7 53 21-77 121-184 (245)
390 PRK14722 flhF flagellar biosyn 98.3 6.5E-06 1.4E-10 63.9 8.4 117 19-135 136-295 (374)
391 PRK11537 putative GTP-binding 98.2 1.6E-05 3.5E-10 60.8 10.0 23 21-43 5-27 (318)
392 PF00448 SRP54: SRP54-type pro 98.2 2.4E-05 5.1E-10 55.8 9.9 66 63-136 83-155 (196)
393 COG3523 IcmF Type VI protein s 98.2 5.7E-06 1.2E-10 72.1 7.7 113 22-136 127-271 (1188)
394 PF02492 cobW: CobW/HypB/UreG, 98.2 3.5E-06 7.5E-11 59.2 5.0 68 64-137 85-157 (178)
395 KOG1424 Predicted GTP-binding 98.1 3.5E-06 7.6E-11 66.6 4.9 58 17-74 311-369 (562)
396 cd03115 SRP The signal recogni 98.1 8.6E-05 1.9E-09 51.8 11.5 65 63-134 82-152 (173)
397 cd03222 ABC_RNaseL_inhibitor T 98.1 0.00012 2.6E-09 51.3 12.1 87 18-114 23-118 (177)
398 cd01854 YjeQ_engC YjeQ/EngC. 98.1 7.2E-06 1.6E-10 61.9 5.9 56 21-77 162-226 (287)
399 KOG3859 Septins (P-loop GTPase 98.1 1.7E-05 3.8E-10 58.3 7.4 113 18-135 40-190 (406)
400 PRK14721 flhF flagellar biosyn 98.1 7E-06 1.5E-10 64.7 5.4 24 19-42 190-213 (420)
401 KOG1534 Putative transcription 98.1 1.3E-05 2.9E-10 56.6 6.1 125 64-192 98-250 (273)
402 PRK00098 GTPase RsgA; Reviewed 98.0 1.1E-05 2.5E-10 61.2 5.8 25 21-45 165-189 (298)
403 COG1162 Predicted GTPases [Gen 98.0 9.2E-06 2E-10 60.7 5.0 23 22-44 166-188 (301)
404 PRK11889 flhF flagellar biosyn 98.0 2E-05 4.3E-10 61.4 6.4 123 20-149 241-406 (436)
405 PRK04195 replication factor C 98.0 4.3E-05 9.3E-10 61.9 8.6 38 6-43 25-62 (482)
406 PF13401 AAA_22: AAA domain; P 98.0 2.2E-05 4.8E-10 51.9 5.8 95 22-130 6-125 (131)
407 COG4619 ABC-type uncharacteriz 98.0 2.5E-05 5.4E-10 53.5 5.8 52 19-81 28-79 (223)
408 TIGR02475 CobW cobalamin biosy 97.9 7E-05 1.5E-09 57.9 8.8 22 22-43 6-27 (341)
409 COG1419 FlhF Flagellar GTP-bin 97.9 3.5E-05 7.7E-10 59.8 7.0 109 19-135 202-352 (407)
410 PRK13695 putative NTPase; Prov 97.9 0.00044 9.4E-09 48.3 12.1 21 21-41 1-21 (174)
411 PRK05703 flhF flagellar biosyn 97.9 0.00012 2.6E-09 58.2 10.2 66 63-135 299-371 (424)
412 PRK12727 flagellar biosynthesi 97.9 3.4E-05 7.5E-10 62.2 7.1 110 19-135 349-498 (559)
413 PF09547 Spore_IV_A: Stage IV 97.9 0.00054 1.2E-08 53.7 13.2 36 3-41 3-38 (492)
414 cd01983 Fer4_NifH The Fer4_Nif 97.9 0.00019 4.1E-09 44.6 9.0 97 23-129 2-99 (99)
415 cd00009 AAA The AAA+ (ATPases 97.9 0.00041 8.8E-09 46.3 11.1 26 19-44 18-43 (151)
416 KOG0469 Elongation factor 2 [T 97.9 5.3E-05 1.1E-09 60.2 7.2 121 22-147 21-179 (842)
417 PF05621 TniB: Bacterial TniB 97.9 0.00024 5.1E-09 53.4 10.4 115 3-130 45-189 (302)
418 PHA02774 E1; Provisional 97.9 0.00043 9.4E-09 56.5 12.4 41 2-42 416-456 (613)
419 PF13207 AAA_17: AAA domain; P 97.9 1.3E-05 2.8E-10 52.4 3.1 22 22-43 1-22 (121)
420 KOG2485 Conserved ATP/GTP bind 97.9 4.1E-05 8.8E-10 57.2 5.8 71 4-74 126-206 (335)
421 COG1126 GlnQ ABC-type polar am 97.9 3.2E-05 6.9E-10 55.0 5.0 26 19-44 27-52 (240)
422 PRK06995 flhF flagellar biosyn 97.9 7.3E-05 1.6E-09 60.0 7.6 23 20-42 256-278 (484)
423 PRK10867 signal recognition pa 97.8 0.00018 3.9E-09 57.2 9.4 80 63-149 183-269 (433)
424 TIGR00959 ffh signal recogniti 97.8 0.0004 8.7E-09 55.2 11.2 81 63-150 182-269 (428)
425 smart00763 AAA_PrkA PrkA AAA d 97.8 2.6E-05 5.6E-10 60.1 4.4 39 2-42 62-100 (361)
426 cd03216 ABC_Carb_Monos_I This 97.8 0.00028 6E-09 48.8 9.1 26 19-44 25-50 (163)
427 PRK14723 flhF flagellar biosyn 97.8 7.9E-05 1.7E-09 62.7 7.4 110 20-134 185-336 (767)
428 KOG2484 GTPase [General functi 97.8 2E-05 4.3E-10 60.7 3.6 56 18-74 250-307 (435)
429 PRK08118 topology modulation p 97.8 1.8E-05 3.9E-10 54.9 3.1 22 22-43 3-24 (167)
430 PF13555 AAA_29: P-loop contai 97.8 2.3E-05 4.9E-10 44.7 2.9 21 22-42 25-45 (62)
431 PRK00771 signal recognition pa 97.8 0.00024 5.2E-09 56.6 9.4 63 64-134 176-245 (437)
432 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.8 0.00073 1.6E-08 45.7 10.6 26 19-44 25-50 (144)
433 COG0563 Adk Adenylate kinase a 97.8 2.4E-05 5.1E-10 54.8 3.1 23 21-43 1-23 (178)
434 COG1136 SalX ABC-type antimicr 97.8 4.5E-05 9.8E-10 55.1 4.6 24 21-44 32-55 (226)
435 COG1162 Predicted GTPases [Gen 97.8 0.0002 4.3E-09 53.8 8.1 86 85-191 77-165 (301)
436 cd02038 FleN-like FleN is a me 97.7 0.0005 1.1E-08 46.2 9.4 103 24-134 4-110 (139)
437 PRK10751 molybdopterin-guanine 97.7 0.0001 2.2E-09 51.3 6.0 53 20-78 6-58 (173)
438 PRK07261 topology modulation p 97.7 2.6E-05 5.6E-10 54.4 3.1 22 22-43 2-23 (171)
439 PF05729 NACHT: NACHT domain 97.7 0.00022 4.8E-09 48.9 7.7 21 23-43 3-23 (166)
440 PRK12726 flagellar biosynthesi 97.7 0.00019 4.2E-09 55.8 7.9 23 19-41 205-227 (407)
441 COG3839 MalK ABC-type sugar tr 97.7 4.4E-05 9.6E-10 58.4 4.4 24 22-45 31-54 (338)
442 PF03266 NTPase_1: NTPase; In 97.7 4.6E-05 1E-09 52.9 3.8 21 22-42 1-21 (168)
443 KOG0057 Mitochondrial Fe/S clu 97.7 0.00029 6.2E-09 56.7 8.6 24 18-41 376-399 (591)
444 PRK12724 flagellar biosynthesi 97.7 0.00021 4.5E-09 56.4 7.8 123 20-149 223-388 (432)
445 COG3640 CooC CO dehydrogenase 97.7 0.00068 1.5E-08 49.0 9.6 46 85-134 153-198 (255)
446 PF13671 AAA_33: AAA domain; P 97.7 3.6E-05 7.8E-10 51.8 2.9 20 23-42 2-21 (143)
447 COG1116 TauB ABC-type nitrate/ 97.7 3.7E-05 8E-10 55.9 2.9 25 22-46 31-55 (248)
448 cd01130 VirB11-like_ATPase Typ 97.7 7.7E-05 1.7E-09 52.7 4.6 23 21-43 26-48 (186)
449 cd04178 Nucleostemin_like Nucl 97.7 5.8E-05 1.2E-09 52.6 3.8 99 89-190 1-107 (172)
450 PRK12723 flagellar biosynthesi 97.6 0.0014 3E-08 51.5 11.6 122 20-148 174-340 (388)
451 cd02019 NK Nucleoside/nucleoti 97.6 5E-05 1.1E-09 44.5 2.9 21 23-43 2-22 (69)
452 COG3638 ABC-type phosphate/pho 97.6 6E-05 1.3E-09 54.3 3.6 22 21-42 31-52 (258)
453 cd00267 ABC_ATPase ABC (ATP-bi 97.6 0.00098 2.1E-08 45.7 9.6 26 19-44 24-49 (157)
454 PF06858 NOG1: Nucleolar GTP-b 97.6 6.9E-05 1.5E-09 41.6 3.0 45 86-132 12-58 (58)
455 PRK14530 adenylate kinase; Pro 97.6 5.8E-05 1.3E-09 54.6 3.5 22 20-41 3-24 (215)
456 PF00005 ABC_tran: ABC transpo 97.6 5.7E-05 1.2E-09 50.4 3.1 25 20-44 11-35 (137)
457 PRK09270 nucleoside triphospha 97.6 9.6E-05 2.1E-09 54.0 4.5 28 16-43 29-56 (229)
458 PRK06731 flhF flagellar biosyn 97.6 0.00019 4E-09 53.6 5.9 108 21-135 76-225 (270)
459 KOG0780 Signal recognition par 97.6 0.00042 9.2E-09 53.5 7.8 84 19-102 100-228 (483)
460 PRK13833 conjugal transfer pro 97.6 0.00052 1.1E-08 52.6 8.4 23 21-43 145-167 (323)
461 KOG0734 AAA+-type ATPase conta 97.6 0.002 4.3E-08 52.0 11.7 118 2-128 318-444 (752)
462 cd03111 CpaE_like This protein 97.6 0.00081 1.8E-08 43.0 8.0 98 25-130 5-106 (106)
463 PF13191 AAA_16: AAA ATPase do 97.6 7.8E-05 1.7E-09 52.3 3.6 38 4-42 9-46 (185)
464 cd02042 ParA ParA and ParB of 97.6 0.00057 1.2E-08 43.3 7.3 81 23-111 2-84 (104)
465 KOG2423 Nucleolar GTPase [Gene 97.6 9.1E-05 2E-09 57.2 4.0 93 4-101 292-388 (572)
466 KOG1970 Checkpoint RAD17-RFC c 97.6 0.00085 1.8E-08 54.1 9.4 37 5-42 96-132 (634)
467 PRK05480 uridine/cytidine kina 97.6 8E-05 1.7E-09 53.6 3.5 26 18-43 4-29 (209)
468 PRK08233 hypothetical protein; 97.6 8.2E-05 1.8E-09 52.2 3.4 25 19-43 2-26 (182)
469 COG0552 FtsY Signal recognitio 97.5 0.00053 1.2E-08 52.0 7.7 126 17-150 136-314 (340)
470 COG1120 FepC ABC-type cobalami 97.5 0.00011 2.4E-09 54.2 4.1 24 20-43 28-51 (258)
471 PF13521 AAA_28: AAA domain; P 97.5 4.8E-05 1E-09 52.5 2.1 22 22-43 1-22 (163)
472 PRK00411 cdc6 cell division co 97.5 0.00085 1.8E-08 53.0 9.4 25 19-43 54-78 (394)
473 COG2884 FtsE Predicted ATPase 97.5 0.00014 3.1E-09 50.8 4.3 22 23-44 31-52 (223)
474 cd03116 MobB Molybdenum is an 97.5 0.00011 2.3E-09 50.6 3.6 51 22-78 3-53 (159)
475 cd01129 PulE-GspE PulE/GspE Th 97.5 0.0011 2.3E-08 49.6 9.2 22 22-43 82-103 (264)
476 KOG3347 Predicted nucleotide k 97.5 7E-05 1.5E-09 50.1 2.4 25 18-42 5-29 (176)
477 TIGR00235 udk uridine kinase. 97.5 8.8E-05 1.9E-09 53.3 3.2 26 18-43 4-29 (207)
478 PRK06217 hypothetical protein; 97.5 8.6E-05 1.9E-09 52.3 3.1 23 21-43 2-24 (183)
479 PF00519 PPV_E1_C: Papillomavi 97.5 0.0002 4.2E-09 55.5 5.0 40 2-41 244-283 (432)
480 TIGR00960 3a0501s02 Type II (G 97.5 0.00021 4.6E-09 51.6 5.1 26 19-44 28-53 (216)
481 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.5 0.00021 4.6E-09 51.7 5.0 26 19-44 29-54 (218)
482 PRK03839 putative kinase; Prov 97.5 9.6E-05 2.1E-09 51.9 3.1 22 22-43 2-23 (180)
483 smart00382 AAA ATPases associa 97.5 0.00012 2.6E-09 48.5 3.4 24 21-44 3-26 (148)
484 TIGR03420 DnaA_homol_Hda DnaA 97.5 0.00039 8.5E-09 50.5 6.4 36 4-43 26-61 (226)
485 cd03261 ABC_Org_Solvent_Resist 97.5 0.00024 5.3E-09 52.0 5.3 26 19-44 25-50 (235)
486 COG1135 AbcC ABC-type metal io 97.5 0.00016 3.4E-09 54.3 4.2 51 20-78 32-82 (339)
487 PF00004 AAA: ATPase family as 97.5 9.4E-05 2E-09 48.8 2.8 21 23-43 1-21 (132)
488 PRK10078 ribose 1,5-bisphospho 97.5 0.0001 2.2E-09 52.1 3.2 23 22-44 4-26 (186)
489 TIGR01166 cbiO cobalt transpor 97.5 0.00026 5.7E-09 50.1 5.2 26 19-44 17-42 (190)
490 TIGR02322 phosphon_PhnN phosph 97.5 9.4E-05 2E-09 51.9 2.9 22 22-43 3-24 (179)
491 PRK13900 type IV secretion sys 97.5 0.00016 3.6E-09 55.6 4.3 25 19-43 159-183 (332)
492 cd03225 ABC_cobalt_CbiO_domain 97.5 0.00026 5.6E-09 51.0 5.1 26 19-44 26-51 (211)
493 PLN03025 replication factor C 97.5 0.0027 5.9E-08 48.8 11.0 37 3-43 21-57 (319)
494 COG4559 ABC-type hemin transpo 97.5 0.00013 2.9E-09 51.9 3.3 25 20-44 27-51 (259)
495 cd02023 UMPK Uridine monophosp 97.5 0.0001 2.2E-09 52.6 2.8 21 23-43 2-22 (198)
496 PRK14737 gmk guanylate kinase; 97.4 0.00018 3.8E-09 50.9 4.0 24 21-44 5-28 (186)
497 COG0541 Ffh Signal recognition 97.4 0.00082 1.8E-08 52.8 7.8 23 18-40 98-120 (451)
498 PF13238 AAA_18: AAA domain; P 97.4 0.00011 2.5E-09 48.2 2.9 21 23-43 1-21 (129)
499 PRK13894 conjugal transfer ATP 97.4 0.0011 2.5E-08 50.7 8.6 24 20-43 148-171 (319)
500 cd03259 ABC_Carb_Solutes_like 97.4 0.0003 6.5E-09 50.7 5.2 26 19-44 25-50 (213)
No 1
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=100.00 E-value=6e-34 Score=202.22 Aligned_cols=189 Identities=72% Similarity=1.190 Sum_probs=157.6
Q ss_pred hHHHHHHHHHhhCCCCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHH
Q 029437 3 LLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWK 82 (193)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~ 82 (193)
|-+|+.+++..++...+..+|+++|++|||||||++++.+..+..+.||.++....+.+++..+.+||+||+..++..+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~~~ 81 (190)
T cd00879 2 IFDWFYNVLSSLGLYNKEAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIGNIKFKTFDLGGHEQARRLWK 81 (190)
T ss_pred hHHHHHHHHHHhhcccCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCcceEEEEECCEEEEEEECCCCHHHHHHHH
Confidence 56788999999998889999999999999999999999998887778888888888888889999999999999888888
Q ss_pred hhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCC
Q 029437 83 DYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLAD 162 (193)
Q Consensus 83 ~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (193)
.+++.+|++++|+|+++.+++.....++..++......+.|+++++||+|+......+++.+.++........ -..+..
T Consensus 82 ~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 160 (190)
T cd00879 82 DYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGK-GVSLKV 160 (190)
T ss_pred HHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccc-cccccc
Confidence 8889999999999999999998888899888876555689999999999998777778888777654421111 011111
Q ss_pred CCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 163 SNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 163 ~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
.......+++|||++|.|++++|+||.+.+
T Consensus 161 ~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~~ 190 (190)
T cd00879 161 SGIRPIEVFMCSVVKRQGYGEAFRWLSQYL 190 (190)
T ss_pred cCceeEEEEEeEecCCCChHHHHHHHHhhC
Confidence 122446799999999999999999998754
No 2
>PLN00223 ADP-ribosylation factor; Provisional
Probab=100.00 E-value=2.5e-34 Score=202.41 Aligned_cols=164 Identities=33% Similarity=0.589 Sum_probs=142.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEE
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVD 96 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d 96 (193)
.++.+||+++|++|||||||++++...++....||.+.+...+.+.+..+.+||+||++.++.++..+++++|++++|+|
T Consensus 14 ~~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt~g~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D 93 (181)
T PLN00223 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
T ss_pred CCCccEEEEECCCCCCHHHHHHHHccCCCccccCCcceeEEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEe
Confidence 46678999999999999999999998888877889888887888889999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeee
Q 029437 97 AYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIV 176 (193)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 176 (193)
+++++++.+...++..+++....++.|+++++||+|+......+++.+.+++... ..+.+.+++|||+
T Consensus 94 ~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~------------~~~~~~~~~~Sa~ 161 (181)
T PLN00223 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL------------RQRHWYIQSTCAT 161 (181)
T ss_pred CCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCcccc------------CCCceEEEeccCC
Confidence 9999999999888888876655578999999999999877777788887775431 1133457799999
Q ss_pred cCCChhhHHHhhhhhc
Q 029437 177 RKMGYGDGFKWLSQYI 192 (193)
Q Consensus 177 ~g~gv~el~~~i~~~~ 192 (193)
+|+|++++|+||.+.+
T Consensus 162 ~g~gv~e~~~~l~~~~ 177 (181)
T PLN00223 162 SGEGLYEGLDWLSNNI 177 (181)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999998765
No 3
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=4.1e-34 Score=201.98 Aligned_cols=183 Identities=80% Similarity=1.329 Sum_probs=155.3
Q ss_pred HHHHHHHHhhCCCCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhh
Q 029437 5 DWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDY 84 (193)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~ 84 (193)
+|+++++.+.+...+.++|+++|++|||||||++++.+..+....||.++....+..++..+.+||+||+..++..+..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~ 81 (184)
T smart00178 2 DWFYDILASLGLWNKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSEELAIGNIKFTTFDLGGHQQARRLWKDY 81 (184)
T ss_pred hHHHHHHHHhccccccCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHH
Confidence 68888888776667889999999999999999999999888777788888888888888999999999999999999999
Q ss_pred cccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCC
Q 029437 85 YAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSN 164 (193)
Q Consensus 85 ~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (193)
+..+|++++|+|+++++++.....++..++......+.|+++++||+|+....+.+++.+.+++........ ...
T Consensus 82 ~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~-----~~~ 156 (184)
T smart00178 82 FPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKG-----KVG 156 (184)
T ss_pred hCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCccccccc-----ccC
Confidence 999999999999999999988888888887655556899999999999987778889998887655211100 011
Q ss_pred CcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 165 VRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 165 ~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
.+...+++|||++|.|++++++||.+++
T Consensus 157 ~~~~~i~~~Sa~~~~g~~~~~~wl~~~~ 184 (184)
T smart00178 157 VRPLEVFMCSVVRRMGYGEGFKWLSQYI 184 (184)
T ss_pred CceeEEEEeecccCCChHHHHHHHHhhC
Confidence 2457899999999999999999998763
No 4
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=100.00 E-value=4.6e-34 Score=198.90 Aligned_cols=161 Identities=34% Similarity=0.597 Sum_probs=138.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEEC
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDA 97 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~ 97 (193)
++.++|+++|++|||||||++++....+....||.+.....+...++.+.+|||||+++++..+..+++.+|++++|+|+
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~ 86 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDS 86 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHccCCCccccCCcccceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeC
Confidence 46789999999999999999999988887777888887777778889999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeec
Q 029437 98 YDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVR 177 (193)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 177 (193)
+++.++.+...++..++......++|+++++||+|+......+++.+.++.... ......+++|||++
T Consensus 87 t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~------------~~~~~~~~~~SAk~ 154 (168)
T cd04149 87 ADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRI------------RDRNWYVQPSCATS 154 (168)
T ss_pred CchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCcc------------CCCcEEEEEeeCCC
Confidence 999999999999988877655568999999999999766667777777654431 11235789999999
Q ss_pred CCChhhHHHhhhh
Q 029437 178 KMGYGDGFKWLSQ 190 (193)
Q Consensus 178 g~gv~el~~~i~~ 190 (193)
|.|++++|+||.+
T Consensus 155 g~gv~~~~~~l~~ 167 (168)
T cd04149 155 GDGLYEGLTWLSS 167 (168)
T ss_pred CCChHHHHHHHhc
Confidence 9999999999975
No 5
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=100.00 E-value=3e-34 Score=200.88 Aligned_cols=174 Identities=42% Similarity=0.699 Sum_probs=157.4
Q ss_pred HHHHHhhCCCCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhccc
Q 029437 8 YGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAK 87 (193)
Q Consensus 8 ~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ 87 (193)
..++.......++.+|+++|+.||||||+++++...+.....||.+.+...+.+.+..+.+||++|+..++..++.+++.
T Consensus 2 ~~~~~~~~~~~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~~ 81 (175)
T PF00025_consen 2 SSVLSKLKSKKKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKSYFQN 81 (175)
T ss_dssp HHHHHHCTTTTSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEEEEEEEETTEEEEEEEESSSGGGGGGGGGGHTT
T ss_pred HHHHHHhcccCcEEEEEEECCCccchHHHHHHhhhccccccCcccccccceeeeCcEEEEEEeccccccccccceeeccc
Confidence 45666666678899999999999999999999999888889999999999999999999999999999999999999999
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcc
Q 029437 88 VDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRP 167 (193)
Q Consensus 88 ~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (193)
+|+++||+|+++++.+.+..+.+..+++.....++|+++++||.|+..+...+++.+.+.+..+. ..+.
T Consensus 82 ~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~-----------~~~~ 150 (175)
T PF00025_consen 82 ADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLK-----------NKRP 150 (175)
T ss_dssp ESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTT-----------SSSC
T ss_pred cceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcc-----------cCCc
Confidence 99999999999999999999999999987777899999999999999888889998888866621 1256
Q ss_pred eEEEEeeeecCCChhhHHHhhhhhc
Q 029437 168 LEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 168 ~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
+.++.|||.+|+|+.|.++||.++|
T Consensus 151 ~~v~~~sa~~g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 151 WSVFSCSAKTGEGVDEGLEWLIEQI 175 (175)
T ss_dssp EEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred eEEEeeeccCCcCHHHHHHHHHhcC
Confidence 7899999999999999999999875
No 6
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=100.00 E-value=8e-34 Score=199.02 Aligned_cols=163 Identities=33% Similarity=0.582 Sum_probs=139.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEEC
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDA 97 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~ 97 (193)
++.+||+++|++|||||||++++..+++....||.+.......+....+.+||+||+..++.++..+++++|++++|+|+
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~ 90 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVETVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDS 90 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCCcCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEEC
Confidence 55799999999999999999999888877777888887777778889999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeec
Q 029437 98 YDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVR 177 (193)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 177 (193)
++++++++..+++..++......+.|+++++||+|+......+++.+.++.... ..+.+.++++||++
T Consensus 91 t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~------------~~~~~~~~~~Sa~~ 158 (175)
T smart00177 91 NDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSI------------RDRNWYIQPTCATS 158 (175)
T ss_pred CCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCcccc------------CCCcEEEEEeeCCC
Confidence 999999999999999876655568999999999999866666777776664431 11345688999999
Q ss_pred CCChhhHHHhhhhhc
Q 029437 178 KMGYGDGFKWLSQYI 192 (193)
Q Consensus 178 g~gv~el~~~i~~~~ 192 (193)
|.|++++|+||.+.+
T Consensus 159 g~gv~e~~~~l~~~~ 173 (175)
T smart00177 159 GDGLYEGLTWLSNNL 173 (175)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998764
No 7
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=100.00 E-value=1.5e-33 Score=198.68 Aligned_cols=164 Identities=35% Similarity=0.627 Sum_probs=139.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEE
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVD 96 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d 96 (193)
.+.++||+++|++|||||||++++..+++....||.+.+...+.+.++.+.+|||||++.++..+..++..+|++|+|+|
T Consensus 14 ~~~~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D 93 (182)
T PTZ00133 14 GKKEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVD 93 (182)
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCccccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEe
Confidence 45569999999999999999999988888877788888877788888999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeee
Q 029437 97 AYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIV 176 (193)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 176 (193)
+++++++.....++..++......+.|+++++||.|+......+++...++...+ ....+.++++||+
T Consensus 94 ~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~------------~~~~~~~~~~Sa~ 161 (182)
T PTZ00133 94 SNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSV------------RQRNWYIQGCCAT 161 (182)
T ss_pred CCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcc------------cCCcEEEEeeeCC
Confidence 9999999999888888876544567999999999999766666777776665431 1133567899999
Q ss_pred cCCChhhHHHhhhhhc
Q 029437 177 RKMGYGDGFKWLSQYI 192 (193)
Q Consensus 177 ~g~gv~el~~~i~~~~ 192 (193)
+|.|++++|+||.+.+
T Consensus 162 tg~gv~e~~~~l~~~i 177 (182)
T PTZ00133 162 TAQGLYEGLDWLSANI 177 (182)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999998764
No 8
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=100.00 E-value=2.8e-33 Score=193.40 Aligned_cols=158 Identities=34% Similarity=0.602 Sum_probs=133.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCCh
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDK 100 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~ 100 (193)
+||+++|.+|||||||++++...++....||.+.+...+.+..+.+.+||+||++++...+..+++++|++++|+|++++
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~~~pt~g~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~ 80 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 80 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCH
Confidence 48999999999999999999888888777888887777788889999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCC
Q 029437 101 ERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMG 180 (193)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 180 (193)
.++++..+++..++......+.|+++++||+|+......+++...+..... ..+.+.+++|||++|.|
T Consensus 81 ~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~------------~~~~~~~~~~Sak~g~g 148 (159)
T cd04150 81 ERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSL------------RNRNWYIQATCATSGDG 148 (159)
T ss_pred HHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccc------------CCCCEEEEEeeCCCCCC
Confidence 999999998988876544467999999999999765555566555543321 01335688999999999
Q ss_pred hhhHHHhhhh
Q 029437 181 YGDGFKWLSQ 190 (193)
Q Consensus 181 v~el~~~i~~ 190 (193)
++++|+||.+
T Consensus 149 v~~~~~~l~~ 158 (159)
T cd04150 149 LYEGLDWLSN 158 (159)
T ss_pred HHHHHHHHhc
Confidence 9999999964
No 9
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=100.00 E-value=9.9e-33 Score=193.21 Aligned_cols=164 Identities=38% Similarity=0.612 Sum_probs=138.2
Q ss_pred CCCCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEE
Q 029437 15 GLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYL 94 (193)
Q Consensus 15 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v 94 (193)
+..+..++|+++|++|||||||++++.+..+....+|.+.....+.+++..+.+||+||++.++.++..++..+|++++|
T Consensus 9 ~~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (173)
T cd04154 9 KLKEREMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQIKTLEYEGYKLNIWDVGGQKTLRPYWRNYFESTDALIWV 88 (173)
T ss_pred hcCCCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEE
Confidence 34567789999999999999999999988777777888877777888889999999999999988888899999999999
Q ss_pred EECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEee
Q 029437 95 VDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCS 174 (193)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 174 (193)
+|++++.++.+...++..++......+.|+++++||+|+......+++.+.+.... .....+++++||
T Consensus 89 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~S 156 (173)
T cd04154 89 VDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDK------------ISSHHWRIQPCS 156 (173)
T ss_pred EECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccc------------cCCCceEEEecc
Confidence 99999999999888888887655557899999999999986656666666554332 011346899999
Q ss_pred eecCCChhhHHHhhhh
Q 029437 175 IVRKMGYGDGFKWLSQ 190 (193)
Q Consensus 175 a~~g~gv~el~~~i~~ 190 (193)
|++|.|++++|+||.+
T Consensus 157 a~~g~gi~~l~~~l~~ 172 (173)
T cd04154 157 AVTGEGLLQGIDWLVD 172 (173)
T ss_pred CCCCcCHHHHHHHHhc
Confidence 9999999999999864
No 10
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=100.00 E-value=2e-32 Score=191.82 Aligned_cols=161 Identities=34% Similarity=0.600 Sum_probs=138.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEEC
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDA 97 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~ 97 (193)
++.++|+++|++|+|||||++++....+....||.+.+...+.+.+..+.+||+||+..+...+..+++.+|++++|+|+
T Consensus 13 ~~~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~ 92 (174)
T cd04153 13 RKEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDS 92 (174)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEEC
Confidence 35689999999999999999999998888888888888888888899999999999999998888899999999999999
Q ss_pred CChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeec
Q 029437 98 YDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVR 177 (193)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 177 (193)
++++++....+++..++......+.|+++++||+|+....+.+++.+.++.... ....+++++|||++
T Consensus 93 s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~------------~~~~~~~~~~SA~~ 160 (174)
T cd04153 93 TDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSI------------RDHTWHIQGCCALT 160 (174)
T ss_pred CCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccc------------cCCceEEEecccCC
Confidence 999999888888888876655568999999999999766666777777664431 01235789999999
Q ss_pred CCChhhHHHhhhh
Q 029437 178 KMGYGDGFKWLSQ 190 (193)
Q Consensus 178 g~gv~el~~~i~~ 190 (193)
|.|++++|+||.+
T Consensus 161 g~gi~e~~~~l~~ 173 (174)
T cd04153 161 GEGLPEGLDWIAS 173 (174)
T ss_pred CCCHHHHHHHHhc
Confidence 9999999999975
No 11
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=100.00 E-value=1.8e-32 Score=191.15 Aligned_cols=160 Identities=35% Similarity=0.597 Sum_probs=134.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChh
Q 029437 22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKE 101 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~ 101 (193)
||+++|++|||||||++++.+..+....||.+.....+.+.+..+.+||+||+..++..+..++..+|++++|+|+++++
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~ 80 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRD 80 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCCcCCcCceeEEEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHH
Confidence 58999999999999999999988877778888777778888999999999999999888888999999999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCCh
Q 029437 102 RFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGY 181 (193)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv 181 (193)
++.++..++..++......+.|+++++||+|+.+....+++.+.+..... .......+++|||++|.|+
T Consensus 81 s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~Sa~~g~gv 149 (169)
T cd04158 81 RVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKL-----------CCGRSWYIQGCDARSGMGL 149 (169)
T ss_pred HHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccc-----------cCCCcEEEEeCcCCCCCCH
Confidence 99999999999986655567899999999999866666666655542220 0012357889999999999
Q ss_pred hhHHHhhhhhc
Q 029437 182 GDGFKWLSQYI 192 (193)
Q Consensus 182 ~el~~~i~~~~ 192 (193)
+++|+||.+.+
T Consensus 150 ~~~f~~l~~~~ 160 (169)
T cd04158 150 YEGLDWLSRQL 160 (169)
T ss_pred HHHHHHHHHHH
Confidence 99999998754
No 12
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=100.00 E-value=5e-32 Score=188.58 Aligned_cols=161 Identities=34% Similarity=0.507 Sum_probs=136.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChh
Q 029437 22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKE 101 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~ 101 (193)
+|+++|++|||||||++++.+.......||.+.....+...+..+.+||+||+..++.++..+++.+|++++|+|++++.
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~ 80 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDD 80 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCccccCcccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchh
Confidence 48999999999999999999874445678888888888888999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecC---
Q 029437 102 RFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRK--- 178 (193)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g--- 178 (193)
++++...++..++......++|+++++||+|+.......++.+.+.... +.+.....+.+++|||++|
T Consensus 81 s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~---------~~~~~~~~~~~~~~Sa~~g~~~ 151 (167)
T cd04161 81 RVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEK---------LVNENKSLCHIEPCSAIEGLGK 151 (167)
T ss_pred HHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCccc---------ccCCCCceEEEEEeEceeCCCC
Confidence 9999999999887665556899999999999987777788877776554 1222224568899999998
Q ss_pred ---CChhhHHHhhhhh
Q 029437 179 ---MGYGDGFKWLSQY 191 (193)
Q Consensus 179 ---~gv~el~~~i~~~ 191 (193)
.|+++.|+||..+
T Consensus 152 ~~~~g~~~~~~wl~~~ 167 (167)
T cd04161 152 KIDPSIVEGLRWLLAA 167 (167)
T ss_pred ccccCHHHHHHHHhcC
Confidence 8999999999763
No 13
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=100.00 E-value=5.1e-32 Score=178.88 Aligned_cols=171 Identities=36% Similarity=0.572 Sum_probs=153.4
Q ss_pred HHhhCCCCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCE
Q 029437 11 LASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDA 90 (193)
Q Consensus 11 ~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 90 (193)
+..++..+++++|+++|..||||||+++++.+.......||.+.+...+.++++.+++||.+|+...++.++.|+.+.|+
T Consensus 7 lrk~k~kerE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W~nYfestdg 86 (185)
T KOG0073|consen 7 LRKQKLKEREVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQIKTLEYKGYTLNIWDVGGQKTLRSYWKNYFESTDG 86 (185)
T ss_pred HHHHHhhhheeEEEEEecCCCCchhHHHHhcCCCccccCCccceeeEEEEecceEEEEEEcCCcchhHHHHHHhhhccCe
Confidence 33444556699999999999999999999999998888899999999999999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEE
Q 029437 91 VVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEV 170 (193)
Q Consensus 91 vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (193)
+++|+|++|+.++++....+...+......+.|+++++||.|+.++...+++...+++..+ . ....+++
T Consensus 87 lIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l---------~--ks~~~~l 155 (185)
T KOG0073|consen 87 LIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEEL---------A--KSHHWRL 155 (185)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHh---------c--cccCceE
Confidence 9999999999999999999999988777778999999999999989999999888876652 1 2356899
Q ss_pred EEeeeecCCChhhHHHhhhhhc
Q 029437 171 FMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 171 ~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
+.|||.+|+++.+.++||++.+
T Consensus 156 ~~cs~~tge~l~~gidWL~~~l 177 (185)
T KOG0073|consen 156 VKCSAVTGEDLLEGIDWLCDDL 177 (185)
T ss_pred EEEeccccccHHHHHHHHHHHH
Confidence 9999999999999999998754
No 14
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=100.00 E-value=1.4e-31 Score=184.74 Aligned_cols=157 Identities=40% Similarity=0.691 Sum_probs=130.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChh
Q 029437 22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKE 101 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~ 101 (193)
||+++|++|+|||||++++....+....||.+.+...+.+.+..+.+|||||+..++.++..++..+|++++|+|++++.
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~ 80 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRD 80 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCcCCccCcCeEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHH
Confidence 58999999999999999998888777778888777778888899999999999999998899999999999999999998
Q ss_pred hHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCCh
Q 029437 102 RFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGY 181 (193)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv 181 (193)
++....+++..+++.....+.|+++++||+|+.......++...+..... .....+++++||++|.|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~------------~~~~~~~~~~Sa~~~~gi 148 (158)
T cd04151 81 RLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSEL------------KDRTWSIFKTSAIKGEGL 148 (158)
T ss_pred HHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCcccc------------CCCcEEEEEeeccCCCCH
Confidence 88777777777766545568999999999999765555566555543220 012357999999999999
Q ss_pred hhHHHhhhh
Q 029437 182 GDGFKWLSQ 190 (193)
Q Consensus 182 ~el~~~i~~ 190 (193)
+++|++|.+
T Consensus 149 ~~l~~~l~~ 157 (158)
T cd04151 149 DEGMDWLVN 157 (158)
T ss_pred HHHHHHHhc
Confidence 999999975
No 15
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.9e-32 Score=185.71 Aligned_cols=157 Identities=25% Similarity=0.350 Sum_probs=128.4
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEE--eCCEEEEEEEcCChhhhHhhHHhhcccCCE
Q 029437 16 LWQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPT--SEELS--IGKIKFKAFDLGGHQIARRVWKDYYAKVDA 90 (193)
Q Consensus 16 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 90 (193)
..+..+||+|+|++|+|||.|+.++....|.. +..|++.. ...++ ...+++++|||+|+++++.+..++++++|+
T Consensus 5 ~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahG 84 (205)
T KOG0084|consen 5 EYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 84 (205)
T ss_pred ccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCe
Confidence 46788999999999999999999999999987 44566653 33444 445899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHH---HHhhCCCccccCCCccccCCCCC
Q 029437 91 VVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEEL---RYHLGLSNFTTGKGKVNLADSNV 165 (193)
Q Consensus 91 vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 165 (193)
||+|||+++.+||..+..|+.++-. ....++|.++|+||+|+.. ..+.++. ...++.+
T Consensus 85 ii~vyDiT~~~SF~~v~~Wi~Ei~~-~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~---------------- 147 (205)
T KOG0084|consen 85 IIFVYDITKQESFNNVKRWIQEIDR-YASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIP---------------- 147 (205)
T ss_pred EEEEEEcccHHHhhhHHHHHHHhhh-hccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCc----------------
Confidence 9999999999999999999999954 4556899999999999983 3333332 2222222
Q ss_pred cceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 166 RPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 166 ~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
.++++||+.+.||++.|..|...+
T Consensus 148 ---~f~ETSAK~~~NVe~~F~~la~~l 171 (205)
T KOG0084|consen 148 ---IFLETSAKDSTNVEDAFLTLAKEL 171 (205)
T ss_pred ---ceeecccCCccCHHHHHHHHHHHH
Confidence 279999999999999999887654
No 16
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.8e-32 Score=184.53 Aligned_cols=165 Identities=36% Similarity=0.624 Sum_probs=154.5
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEE
Q 029437 16 LWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLV 95 (193)
Q Consensus 16 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~ 95 (193)
...++.+|+++|-.+|||||+++++...++....||++.+.+.+.++++++++||.+|+.+++..+.+++++.+++|||+
T Consensus 13 ~~~~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVv 92 (181)
T KOG0070|consen 13 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGFNVETVEYKNISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVV 92 (181)
T ss_pred cCcceEEEEEEeccCCCceeeeEeeccCCcccCCCccccceeEEEEcceEEEEEecCCCcccccchhhhccCCcEEEEEE
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeee
Q 029437 96 DAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSI 175 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 175 (193)
|++|++.+.+..+.+..++.+....+.|+++.+||.|++.+.+..++.+.+++..+ .+ +...+..|+|
T Consensus 93 DS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l---------~~---~~w~iq~~~a 160 (181)
T KOG0070|consen 93 DSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSL---------RS---RNWHIQSTCA 160 (181)
T ss_pred eCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhcc---------CC---CCcEEeeccc
Confidence 99999999999999999999888889999999999999999999999999987773 22 5577889999
Q ss_pred ecCCChhhHHHhhhhhc
Q 029437 176 VRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 176 ~~g~gv~el~~~i~~~~ 192 (193)
.+|+|+.|.++||.+.+
T Consensus 161 ~~G~GL~egl~wl~~~~ 177 (181)
T KOG0070|consen 161 ISGEGLYEGLDWLSNNL 177 (181)
T ss_pred cccccHHHHHHHHHHHH
Confidence 99999999999998865
No 17
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=100.00 E-value=5.1e-31 Score=182.46 Aligned_cols=158 Identities=33% Similarity=0.625 Sum_probs=128.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCc-c-ccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCC
Q 029437 22 KILFLGLDNAGKTTLLHMLKDERL-V-QHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYD 99 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~~~~-~-~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~ 99 (193)
+|+++|++|||||||++++.+..+ . ...||.+.....+...+..+.+|||||+.++...+..+++.+|++++|+|+++
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~ 80 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSD 80 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCc
Confidence 589999999999999999998753 2 35678877776677788999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHcCCC--CCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeec
Q 029437 100 KERFAESKKELDALLSDEA--LANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVR 177 (193)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~--~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 177 (193)
+.++.....++..++.... ..++|+++++||+|+......+++...++.... ......++++||++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~------------~~~~~~~~~~Sa~~ 148 (162)
T cd04157 81 RLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENI------------KDKPWHIFASNALT 148 (162)
T ss_pred HHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccc------------cCceEEEEEeeCCC
Confidence 9988888888887765432 258999999999999866555566555543320 11235789999999
Q ss_pred CCChhhHHHhhhhh
Q 029437 178 KMGYGDGFKWLSQY 191 (193)
Q Consensus 178 g~gv~el~~~i~~~ 191 (193)
|.|++++|+||.++
T Consensus 149 g~gv~~~~~~l~~~ 162 (162)
T cd04157 149 GEGLDEGVQWLQAQ 162 (162)
T ss_pred CCchHHHHHHHhcC
Confidence 99999999999763
No 18
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.6e-32 Score=182.75 Aligned_cols=157 Identities=22% Similarity=0.347 Sum_probs=131.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCcc--eeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEEE
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQH-QPTQYPT--SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAVV 92 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~--~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~vl 92 (193)
..++|++++|+.++|||||+.++..+.|... .+|++-. ...+...+ +++.+|||+|+++|..+.++++++++++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 4578999999999999999999999999884 7888754 33444444 88999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceEE
Q 029437 93 YLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEV 170 (193)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (193)
+|||+++.+||..+..|..++-.... +++-+.+++||+|+.. ++..++....-.... ..+
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~-~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~g-----------------ll~ 144 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQAS-PNIVIALVGNKADLLERREVEFEEAQAYAESQG-----------------LLF 144 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCC-CCeEEEEecchhhhhhcccccHHHHHHHHHhcC-----------------CEE
Confidence 99999999999999999999965544 7788889999999984 555555443333222 568
Q ss_pred EEeeeecCCChhhHHHhhhhhc
Q 029437 171 FMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 171 ~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
+++||++|.|++++|..|.+.+
T Consensus 145 ~ETSAKTg~Nv~~if~~Ia~~l 166 (200)
T KOG0092|consen 145 FETSAKTGENVNEIFQAIAEKL 166 (200)
T ss_pred EEEecccccCHHHHHHHHHHhc
Confidence 9999999999999999998765
No 19
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=100.00 E-value=7.8e-31 Score=185.13 Aligned_cols=163 Identities=36% Similarity=0.534 Sum_probs=130.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEe-----CCEEEEEEEcCChhhhHhhHHhhcccCCEEEE
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSI-----GKIKFKAFDLGGHQIARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~-----~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~ 93 (193)
+.++|+++|++|||||||++++...++....||.+........ .+..+.+|||||++++..++..+++.+|++++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence 3589999999999999999999998887777777665554433 45789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEe
Q 029437 94 LVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMC 173 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
|+|+++++++.....++..+.......+.|+++++||+|+......+++....+.... .....+.+++|
T Consensus 82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~ 150 (183)
T cd04152 82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHEL-----------SASTPWHVQPA 150 (183)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCcccc-----------CCCCceEEEEe
Confidence 9999999988888888887765544468999999999999765555655544442220 00023568999
Q ss_pred eeecCCChhhHHHhhhhhc
Q 029437 174 SIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 174 Sa~~g~gv~el~~~i~~~~ 192 (193)
||++|.|+++++++|.+.+
T Consensus 151 SA~~~~gi~~l~~~l~~~l 169 (183)
T cd04152 151 CAIIGEGLQEGLEKLYEMI 169 (183)
T ss_pred ecccCCCHHHHHHHHHHHH
Confidence 9999999999999998764
No 20
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=100.00 E-value=6.7e-31 Score=181.59 Aligned_cols=158 Identities=38% Similarity=0.622 Sum_probs=130.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeC-CEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCCh
Q 029437 22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIG-KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDK 100 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~ 100 (193)
+|+++|++|||||||++++.+.++....||.+.....+... ...+.+||+||+..+...+..++..+|++++|+|++++
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~ 80 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDE 80 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcceEEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcH
Confidence 58999999999999999999999877778877766666553 57899999999999988888889999999999999999
Q ss_pred hhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCC
Q 029437 101 ERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMG 180 (193)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 180 (193)
.++.....++..++......+.|+++++||+|+......+++...++.... . .....++++|||++|.|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~---------~--~~~~~~~~~~Sa~~~~g 149 (160)
T cd04156 81 ARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKY---------C--SDRDWYVQPCSAVTGEG 149 (160)
T ss_pred HHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCccc---------C--CCCcEEEEecccccCCC
Confidence 999999999988876655568999999999999765556666655543221 0 01235789999999999
Q ss_pred hhhHHHhhhh
Q 029437 181 YGDGFKWLSQ 190 (193)
Q Consensus 181 v~el~~~i~~ 190 (193)
++++|++|.+
T Consensus 150 v~~~~~~i~~ 159 (160)
T cd04156 150 LAEAFRKLAS 159 (160)
T ss_pred hHHHHHHHhc
Confidence 9999999965
No 21
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=4.8e-31 Score=186.40 Aligned_cols=157 Identities=15% Similarity=0.280 Sum_probs=124.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCc--ceeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEE
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQH-QPTQYP--TSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~t~~~--~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~v 91 (193)
....+||+++|++|+|||||+.++....+... .++.+. ....+..++ +.+.+|||+|++++..++..+++++|++
T Consensus 3 ~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~i 82 (189)
T cd04121 3 YDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGI 82 (189)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence 34568999999999999999999998877643 344443 233344444 7899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceE
Q 029437 92 VYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLE 169 (193)
Q Consensus 92 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
|+|+|++++.+++++..|+..+... .++.|+++|+||.|+.. ..+.++....... ..+.
T Consensus 83 llVfD~t~~~Sf~~~~~w~~~i~~~--~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~-----------------~~~~ 143 (189)
T cd04121 83 ILVYDITNRWSFDGIDRWIKEIDEH--APGVPKILVGNRLHLAFKRQVATEQAQAYAER-----------------NGMT 143 (189)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECccchhccCCCHHHHHHHHHH-----------------cCCE
Confidence 9999999999999999988888543 36899999999999963 3344433222211 2257
Q ss_pred EEEeeeecCCChhhHHHhhhhhc
Q 029437 170 VFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
+++|||++|.||+++|++|.+.+
T Consensus 144 ~~e~SAk~g~~V~~~F~~l~~~i 166 (189)
T cd04121 144 FFEVSPLCNFNITESFTELARIV 166 (189)
T ss_pred EEEecCCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998754
No 22
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.98 E-value=2.1e-30 Score=181.37 Aligned_cols=164 Identities=36% Similarity=0.627 Sum_probs=137.9
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEE
Q 029437 16 LWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLV 95 (193)
Q Consensus 16 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~ 95 (193)
.....++|+++|++|||||||++++.+..+....+|.+.+...+...+..+.+||+||+..+...+..+++.+|++++|+
T Consensus 10 ~~~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 89 (173)
T cd04155 10 KSSEEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVI 89 (173)
T ss_pred ccCCccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEE
Confidence 44568999999999999999999999988777778888887788888899999999999988888888889999999999
Q ss_pred ECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeee
Q 029437 96 DAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSI 175 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 175 (193)
|+++..++.....++...+......++|+++++||+|+......+++.+.++.... ..+...+++|||
T Consensus 90 D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~------------~~~~~~~~~~Sa 157 (173)
T cd04155 90 DSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDL------------RDRTWHIQACSA 157 (173)
T ss_pred eCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCccc------------CCCeEEEEEeEC
Confidence 99999888888888888876555568999999999999866666677666654431 113356789999
Q ss_pred ecCCChhhHHHhhhhh
Q 029437 176 VRKMGYGDGFKWLSQY 191 (193)
Q Consensus 176 ~~g~gv~el~~~i~~~ 191 (193)
++|+|++++|+||.++
T Consensus 158 ~~~~gi~~~~~~l~~~ 173 (173)
T cd04155 158 KTGEGLQEGMNWVCKN 173 (173)
T ss_pred CCCCCHHHHHHHHhcC
Confidence 9999999999999863
No 23
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.98 E-value=1.7e-30 Score=179.22 Aligned_cols=157 Identities=40% Similarity=0.664 Sum_probs=136.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChh
Q 029437 22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKE 101 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~ 101 (193)
||+++|++|||||||++++.+..+....+|.+.....+.+....+.+||+||+..+...+..+++.+|++++|+|+++++
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~ 80 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRE 80 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHH
Confidence 58999999999999999999998777778888888888888999999999999999989899999999999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCCh
Q 029437 102 RFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGY 181 (193)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv 181 (193)
++.....++..+.......+.|+++++||+|+......+++.+.++... ......+++++||++|.|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~Sa~~~~gv 148 (158)
T cd00878 81 RIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEK------------ILGRRWHIQPCSAVTGDGL 148 (158)
T ss_pred HHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhh------------ccCCcEEEEEeeCCCCCCH
Confidence 9999999998887765567899999999999986666667766665432 1113468999999999999
Q ss_pred hhHHHhhhh
Q 029437 182 GDGFKWLSQ 190 (193)
Q Consensus 182 ~el~~~i~~ 190 (193)
+++|++|..
T Consensus 149 ~~~~~~l~~ 157 (158)
T cd00878 149 DEGLDWLLQ 157 (158)
T ss_pred HHHHHHHhh
Confidence 999999975
No 24
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=2.1e-31 Score=176.40 Aligned_cols=193 Identities=81% Similarity=1.298 Sum_probs=181.4
Q ss_pred CchHHHHHHHHHhhCCCCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhh
Q 029437 1 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRV 80 (193)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~ 80 (193)
|++.+||..+++..+..++.=|+++.|-.|+|||||++.+..+...+..||..++.+.+...+.+++.+|.+|+...+..
T Consensus 1 ~fl~ewF~~VLq~LgL~kK~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPTSE~l~Ig~m~ftt~DLGGH~qArr~ 80 (193)
T KOG0077|consen 1 SFLFEWFSSVLQFLGLYKKFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELSIGGMTFTTFDLGGHLQARRV 80 (193)
T ss_pred CcHHHHHHHHHHHHHHhccCceEEEEeecCCchhhHHHHHccccccccCCCcCCChHHheecCceEEEEccccHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCcccc
Q 029437 81 WKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNL 160 (193)
Q Consensus 81 ~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (193)
+..++..+|++++.+|+.|.+.+.+....+..++......++|+++++||+|.+++.+.+++...+++......+...+.
T Consensus 81 wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~ 160 (193)
T KOG0077|consen 81 WKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNL 160 (193)
T ss_pred HHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccc
Confidence 99999999999999999999999999999999988777789999999999999999999999999998887777777777
Q ss_pred CCCCCcceEEEEeeeecCCChhhHHHhhhhhcC
Q 029437 161 ADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK 193 (193)
Q Consensus 161 ~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~~ 193 (193)
.....+...++.||...+.|..+.|.|+...+.
T Consensus 161 ~~~~~rp~evfmcsi~~~~gy~e~fkwl~qyi~ 193 (193)
T KOG0077|consen 161 TDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYIK 193 (193)
T ss_pred cCCCCCeEEEEEEEEEccCccceeeeehhhhcC
Confidence 777778899999999999999999999988763
No 25
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.98 E-value=3.1e-31 Score=188.32 Aligned_cols=170 Identities=17% Similarity=0.247 Sum_probs=121.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCccee-E--EEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEE
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTSE-E--LSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYL 94 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~-~--~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v 94 (193)
..+||+++|++|+|||||+.++..+.|.. +.||.+.... . +....+.+.+|||+|+++++.++..+++++|++++|
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 56899999999999999999999998854 5567654332 2 223347899999999999999999999999999999
Q ss_pred EECCChhhHHHHHH-HHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEe
Q 029437 95 VDAYDKERFAESKK-ELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMC 173 (193)
Q Consensus 95 ~d~~~~~~~~~~~~-~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
+|++++++|+++.. |...+.. ..++.|+++|+||.|+.......+............. ....+++. .+...+++|
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~--~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~-~~~~~a~~-~~~~~~~e~ 157 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCH--HCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQ-QGGALAKQ-IHAVKYLEC 157 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHh--hCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHH-HHHHHHHH-cCCcEEEEe
Confidence 99999999999975 4444432 2358999999999999643221111111111110000 00111111 123579999
Q ss_pred eeecCCChhhHHHhhhhhc
Q 029437 174 SIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 174 Sa~~g~gv~el~~~i~~~~ 192 (193)
||++|.|++++|++|.+.+
T Consensus 158 SAk~g~~v~e~f~~l~~~~ 176 (191)
T cd01875 158 SALNQDGVKEVFAEAVRAV 176 (191)
T ss_pred CCCCCCCHHHHHHHHHHHH
Confidence 9999999999999998754
No 26
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.98 E-value=2.2e-30 Score=180.18 Aligned_cols=160 Identities=38% Similarity=0.618 Sum_probs=130.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCc-------cccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEE
Q 029437 22 KILFLGLDNAGKTTLLHMLKDERL-------VQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYL 94 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~~~~-------~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v 94 (193)
+|+++|++|||||||++++.+... ....+|.+.+...+.+++..+.+|||||+..+..++..++..+|++++|
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~v 80 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYV 80 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence 589999999999999999975432 2345677777888888899999999999999999888899999999999
Q ss_pred EECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEee
Q 029437 95 VDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCS 174 (193)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 174 (193)
+|+++++++.....++..++......+.|+++++||+|+......+++.+.+...... ......+++++|
T Consensus 81 vd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~S 150 (167)
T cd04160 81 IDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEE----------IGRRDCLVLPVS 150 (167)
T ss_pred EECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhcccccc----------ccCCceEEEEee
Confidence 9999998888888888888766555789999999999998766666665555433210 011346899999
Q ss_pred eecCCChhhHHHhhhhh
Q 029437 175 IVRKMGYGDGFKWLSQY 191 (193)
Q Consensus 175 a~~g~gv~el~~~i~~~ 191 (193)
|++|.|++++++||..+
T Consensus 151 a~~g~gv~e~~~~l~~~ 167 (167)
T cd04160 151 ALEGTGVREGIEWLVER 167 (167)
T ss_pred CCCCcCHHHHHHHHhcC
Confidence 99999999999999753
No 27
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.97 E-value=1.1e-30 Score=186.23 Aligned_cols=154 Identities=18% Similarity=0.304 Sum_probs=120.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCc--ceeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEEEEEEE
Q 029437 22 KILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYP--TSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVD 96 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d 96 (193)
.|+++|++|+|||||++++..+.|.. ..+|.+. ....+.+++ +.+.+|||+|+++++.++..+++++|++++|+|
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfD 81 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYD 81 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEE
Confidence 68999999999999999999998876 3456543 334455554 788999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEee
Q 029437 97 AYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCS 174 (193)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 174 (193)
++++++|+++..|+..+ ......+.|+++|+||+|+.. .....+.. ++.... ....+++||
T Consensus 82 vtd~~Sf~~l~~w~~~i-~~~~~~~~piilVgNK~DL~~~~~v~~~~~~-~~a~~~---------------~~~~~~etS 144 (202)
T cd04120 82 ITKKETFDDLPKWMKMI-DKYASEDAELLLVGNKLDCETDREISRQQGE-KFAQQI---------------TGMRFCEAS 144 (202)
T ss_pred CcCHHHHHHHHHHHHHH-HHhCCCCCcEEEEEECcccccccccCHHHHH-HHHHhc---------------CCCEEEEec
Confidence 99999999998887755 333446899999999999963 22222221 111000 125689999
Q ss_pred eecCCChhhHHHhhhhhc
Q 029437 175 IVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 175 a~~g~gv~el~~~i~~~~ 192 (193)
|++|.||+++|++|.+.+
T Consensus 145 Aktg~gV~e~F~~l~~~~ 162 (202)
T cd04120 145 AKDNFNVDEIFLKLVDDI 162 (202)
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999998754
No 28
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4.5e-31 Score=179.44 Aligned_cols=159 Identities=21% Similarity=0.283 Sum_probs=129.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEEe--CCEEEEEEEcCChhhhHhhHHhhcccCCEE
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPT--SEELSI--GKIKFKAFDLGGHQIARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~d~v 91 (193)
..+.+|++++|+.++|||||+++++.+.|.. +.+|++.. ..++.+ ..+++++|||+|+++|+.+.+.+++++.++
T Consensus 19 ~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~va 98 (221)
T KOG0094|consen 19 PLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 98 (221)
T ss_pred cceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEE
Confidence 4566999999999999999999999999876 56787764 334444 457899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC--CCHHHHHHhhCCCccccCCCccccCCCCCcceE
Q 029437 92 VYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA--ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLE 169 (193)
Q Consensus 92 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
++|+|+++..+|++..+|+.+...+....++-+++|+||.||... ...+|-. .. ++ .-...
T Consensus 99 viVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~-----~k---Ak---------el~a~ 161 (221)
T KOG0094|consen 99 VIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGE-----RK---AK---------ELNAE 161 (221)
T ss_pred EEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHH-----HH---HH---------HhCcE
Confidence 999999999999999999999998877767889999999999843 2222211 11 00 02247
Q ss_pred EEEeeeecCCChhhHHHhhhhhc
Q 029437 170 VFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
++++||+.|.||.++|..|...+
T Consensus 162 f~etsak~g~NVk~lFrrIaa~l 184 (221)
T KOG0094|consen 162 FIETSAKAGENVKQLFRRIAAAL 184 (221)
T ss_pred EEEecccCCCCHHHHHHHHHHhc
Confidence 89999999999999999887654
No 29
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.97 E-value=1.3e-30 Score=182.24 Aligned_cols=156 Identities=20% Similarity=0.273 Sum_probs=121.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEEEEEE
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAVVYLV 95 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~ 95 (193)
.+||+++|.+|+|||||++++....+.. ..||.+... ..+..++ ..+.+|||||+..+..++..++..+|++++|+
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~ 81 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICY 81 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEE
Confidence 4799999999999999999999998864 456665332 2344443 67999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC--CCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEe
Q 029437 96 DAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA--ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMC 173 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
|++++.+++.+..|+..+......+++|+++++||+|+... .+.++...... . ..+++++|
T Consensus 82 d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~--~---------------~~~~~~e~ 144 (172)
T cd04141 82 SVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAR--E---------------FNCPFFET 144 (172)
T ss_pred ECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHH--H---------------hCCEEEEE
Confidence 99999999999887766654334468999999999998632 23222211110 0 23578999
Q ss_pred eeecCCChhhHHHhhhhhc
Q 029437 174 SIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 174 Sa~~g~gv~el~~~i~~~~ 192 (193)
||++|.||+++|++|.+.+
T Consensus 145 Sa~~~~~v~~~f~~l~~~~ 163 (172)
T cd04141 145 SAALRHYIDDAFHGLVREI 163 (172)
T ss_pred ecCCCCCHHHHHHHHHHHH
Confidence 9999999999999998654
No 30
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.97 E-value=1.9e-30 Score=187.04 Aligned_cols=165 Identities=21% Similarity=0.232 Sum_probs=126.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCCh
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDK 100 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~ 100 (193)
+||+++|.+|+|||||++++..+.|....+|.+.......+..+.+.+|||+|++.+..+...+++.+|++|+|+|++++
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~ 80 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNV 80 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCCCccceEEEEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCH
Confidence 58999999999999999999999988777788776665666778899999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC---------------------CCHHHH---HHhhCCCccccCCC
Q 029437 101 ERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA---------------------ASEEEL---RYHLGLSNFTTGKG 156 (193)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~---------------------~~~~~~---~~~~~~~~~~~~~~ 156 (193)
+++..+..|+..+... ...+.|+|+|+||+|+... ...++. .+..+... .-
T Consensus 81 ~Sf~~l~~~~~~l~~~-~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~----~~ 155 (220)
T cd04126 81 QSLEELEDRFLGLTDT-ANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYK----ML 155 (220)
T ss_pred HHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccc----cc
Confidence 9999999998887653 3467999999999998641 111111 11111000 00
Q ss_pred ccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 157 KVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 157 ~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
.+++.- .....+++|||++|.||+++|+.|.+.+
T Consensus 156 ~~~~~~--~~~~~~~E~SA~tg~~V~elf~~i~~~~ 189 (220)
T cd04126 156 DEDLSP--AAEKMCFETSAKTGYNVDELFEYLFNLV 189 (220)
T ss_pred cccccc--cccceEEEeeCCCCCCHHHHHHHHHHHH
Confidence 001110 0125799999999999999999998754
No 31
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.97 E-value=3e-30 Score=179.05 Aligned_cols=156 Identities=19% Similarity=0.265 Sum_probs=122.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc-eeEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEEEEEE
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPT-SEELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLV 95 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~ 95 (193)
++||+++|++|||||||++++..+.+.. ..||.+.. ...+..+ ...+.+|||||++.+..++..+++.+|++++|+
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 4799999999999999999999887754 33555432 2334444 467789999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCC--CHHHHHHhhCCCccccCCCccccCCCCCcceEEEEe
Q 029437 96 DAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAA--SEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMC 173 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
|++++.+++.+.+|+..+.......+.|+++++||+|+.... ..++.. .+... ...++++|
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~-~~~~~----------------~~~~~~~~ 143 (164)
T cd04175 81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQ-NLARQ----------------WGCAFLET 143 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHH-HHHHH----------------hCCEEEEe
Confidence 999999999999999998766556789999999999997432 222211 11111 12478999
Q ss_pred eeecCCChhhHHHhhhhhc
Q 029437 174 SIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 174 Sa~~g~gv~el~~~i~~~~ 192 (193)
||++|.|++++|++|.+++
T Consensus 144 Sa~~~~~v~~~~~~l~~~l 162 (164)
T cd04175 144 SAKAKINVNEIFYDLVRQI 162 (164)
T ss_pred eCCCCCCHHHHHHHHHHHh
Confidence 9999999999999998865
No 32
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.97 E-value=1e-29 Score=176.40 Aligned_cols=155 Identities=34% Similarity=0.488 Sum_probs=128.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChh
Q 029437 23 ILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKE 101 (193)
Q Consensus 23 i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~ 101 (193)
|+++|++|||||||++++.+..+.. ..||.+.....+...+..+.+||+||+..++.++..+++++|++++|+|++++.
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~ 81 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSE 81 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcceEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHH
Confidence 7899999999999999999887654 567877777777888899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeec----
Q 029437 102 RFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVR---- 177 (193)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---- 177 (193)
++.....++..+.... +++|+++++||+|+......+++...++...+ ++ ...+.+++|||++
T Consensus 82 s~~~~~~~l~~~~~~~--~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~---------~~--~~~~~~~~~Sa~~~~s~ 148 (164)
T cd04162 82 RLPLARQELHQLLQHP--PDLPLVVLANKQDLPAARSVQEIHKELELEPI---------AR--GRRWILQGTSLDDDGSP 148 (164)
T ss_pred HHHHHHHHHHHHHhCC--CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhh---------cC--CCceEEEEeeecCCCCh
Confidence 9999988888886432 68999999999999876666666666554431 11 1235677888777
Q ss_pred --CCChhhHHHhhhh
Q 029437 178 --KMGYGDGFKWLSQ 190 (193)
Q Consensus 178 --g~gv~el~~~i~~ 190 (193)
++||+++|+.+..
T Consensus 149 ~~~~~v~~~~~~~~~ 163 (164)
T cd04162 149 SRMEAVKDLLSQLIN 163 (164)
T ss_pred hHHHHHHHHHHHHhc
Confidence 9999999998753
No 33
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=5.8e-30 Score=183.25 Aligned_cols=156 Identities=19% Similarity=0.237 Sum_probs=122.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEEeC---CEEEEEEEcCChhhhHhhHHhhcccCCEEEEE
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPT--SEELSIG---KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYL 94 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~---~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v 94 (193)
+||+++|++|||||||++++.+..+.. ..||.+.. ...+..+ .+.+.+|||||++.+..++..+++++|++++|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 589999999999999999999988765 45666533 2334433 57899999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHcCC---CCCCCcEEEEEeCCCCC--CCCCHHHHHHhhCCCccccCCCccccCCCCCcceE
Q 029437 95 VDAYDKERFAESKKELDALLSDE---ALANVPFLVLGNKIDIP--YAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLE 169 (193)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~---~~~~~pviiv~nK~D~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
+|++++++++.+..|+..+.... ...++|+++|+||+|+. +....+++.+.... . ....
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~-~---------------~~~~ 144 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKE-N---------------GFIG 144 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHH-c---------------CCce
Confidence 99999999999988877664322 23689999999999996 34444444333221 1 1246
Q ss_pred EEEeeeecCCChhhHHHhhhhhc
Q 029437 170 VFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
+++|||++|.|++++|++|.+.+
T Consensus 145 ~~e~Sak~~~~v~e~f~~l~~~l 167 (201)
T cd04107 145 WFETSAKEGINIEEAMRFLVKNI 167 (201)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998754
No 34
>PTZ00369 Ras-like protein; Provisional
Probab=99.97 E-value=3.9e-30 Score=182.44 Aligned_cols=158 Identities=17% Similarity=0.233 Sum_probs=123.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCccee-E--EEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEE
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTSE-E--LSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~-~--~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~ 93 (193)
+..+||+++|++|||||||++++.+..+.. ..||.+.... . +....+.+.+|||||++.+..++..+++.+|++++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 456899999999999999999999988764 4455544332 2 23334678899999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC--CCHHHHHHhhCCCccccCCCccccCCCCCcceEEE
Q 029437 94 LVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA--ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVF 171 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (193)
|+|++++++++.+..|+..+.+.....+.|+++++||+|+... ...++...... . ...+++
T Consensus 83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~-~----------------~~~~~~ 145 (189)
T PTZ00369 83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAK-S----------------FGIPFL 145 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHH-H----------------hCCEEE
Confidence 9999999999999998888876555568999999999998632 22222221111 1 124689
Q ss_pred EeeeecCCChhhHHHhhhhhc
Q 029437 172 MCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 172 ~~Sa~~g~gv~el~~~i~~~~ 192 (193)
++||++|.|++++|++|.+.+
T Consensus 146 e~Sak~~~gi~~~~~~l~~~l 166 (189)
T PTZ00369 146 ETSAKQRVNVDEAFYELVREI 166 (189)
T ss_pred EeeCCCCCCHHHHHHHHHHHH
Confidence 999999999999999998654
No 35
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.97 E-value=9.6e-30 Score=179.10 Aligned_cols=156 Identities=19% Similarity=0.243 Sum_probs=121.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEe------------CCEEEEEEEcCChhhhHhhHHh
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSI------------GKIKFKAFDLGGHQIARRVWKD 83 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~------------~~~~~~~~D~~G~~~~~~~~~~ 83 (193)
+.+||+++|++|||||||++++....+.. ..+|.+... ..+.+ ....+.+||+||++.+......
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 45899999999999999999999888765 345554332 22322 2378999999999999999999
Q ss_pred hcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC--CCHHHHHHhhCCCccccCCCccccC
Q 029437 84 YYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA--ASEEELRYHLGLSNFTTGKGKVNLA 161 (193)
Q Consensus 84 ~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (193)
+++++|++++|+|+++++++..+..|+..+......++.|+++|+||+|+... ...++.. ++....
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~-~~~~~~----------- 150 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAK-ALADKY----------- 150 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHH-HHHHHc-----------
Confidence 99999999999999999999999998888765444568899999999999632 2333321 111111
Q ss_pred CCCCcceEEEEeeeecCCChhhHHHhhhhh
Q 029437 162 DSNVRPLEVFMCSIVRKMGYGDGFKWLSQY 191 (193)
Q Consensus 162 ~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~ 191 (193)
.++++++||++|.|++++|++|.+.
T Consensus 151 -----~~~~~e~Sak~~~~v~~l~~~l~~~ 175 (180)
T cd04127 151 -----GIPYFETSAATGTNVEKAVERLLDL 175 (180)
T ss_pred -----CCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 2468999999999999999999864
No 36
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.97 E-value=4e-30 Score=178.84 Aligned_cols=153 Identities=20% Similarity=0.327 Sum_probs=119.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcceeEEEe----CCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEE
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTSEELSI----GKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLV 95 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~----~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~ 95 (193)
+||+++|++|||||||++++....+.. ..+|.+.......+ ....+.+|||+|++.+..+...++..+|++++|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 589999999999999999999877654 45666655444332 3478999999999998888888889999999999
Q ss_pred ECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeee
Q 029437 96 DAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSI 175 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 175 (193)
|++++++++.+..|+..+.... .++|+++++||+|+.......+...... . ....++++||
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~--~~~piiiv~nK~Dl~~~~~~~~~~~~~~--~---------------~~~~~~e~Sa 141 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVC--GNIPIVLCGNKVDIKDRKVKAKQITFHR--K---------------KNLQYYEISA 141 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhcccccCCHHHHHHHH--H---------------cCCEEEEEeC
Confidence 9999999999988888875543 3899999999999973222111111111 1 2367999999
Q ss_pred ecCCChhhHHHhhhhhc
Q 029437 176 VRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 176 ~~g~gv~el~~~i~~~~ 192 (193)
++|.|++++|++|.+.+
T Consensus 142 ~~~~~v~~~f~~l~~~~ 158 (166)
T cd00877 142 KSNYNFEKPFLWLARKL 158 (166)
T ss_pred CCCCChHHHHHHHHHHH
Confidence 99999999999998754
No 37
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.97 E-value=4.5e-30 Score=177.55 Aligned_cols=157 Identities=17% Similarity=0.257 Sum_probs=121.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc-eeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEEEEEE
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPT-SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAVVYLV 95 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~ 95 (193)
++||+++|++|||||||++++.++.+.. ..||.+.. ...+..++ ..+.+|||+|++.+..++..+++.+|++++|+
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 3689999999999999999999888754 33454432 22233333 56889999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC-CCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEee
Q 029437 96 DAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA-ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCS 174 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 174 (193)
|++++.+++.+..|+..+.......+.|+++++||+|+... ....+....... ...+++++|
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~-----------------~~~~~~~~S 143 (162)
T cd04138 81 AINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAKS-----------------YGIPYIETS 143 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHHH-----------------hCCeEEEec
Confidence 99999999999888888876555568999999999999742 222222222110 124689999
Q ss_pred eecCCChhhHHHhhhhhcC
Q 029437 175 IVRKMGYGDGFKWLSQYIK 193 (193)
Q Consensus 175 a~~g~gv~el~~~i~~~~~ 193 (193)
|++|.|++++|++|.+.++
T Consensus 144 a~~~~gi~~l~~~l~~~~~ 162 (162)
T cd04138 144 AKTRQGVEEAFYTLVREIR 162 (162)
T ss_pred CCCCCCHHHHHHHHHHHhC
Confidence 9999999999999988763
No 38
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.97 E-value=3.5e-30 Score=178.41 Aligned_cols=156 Identities=21% Similarity=0.261 Sum_probs=121.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCc-ceeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEEEEEE
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYP-TSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAVVYLV 95 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~-~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~ 95 (193)
++||+++|++|||||||++++....+.. ..||... ....+..++ ..+.+|||||++++..++..+++.+|++++|+
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 3699999999999999999999888765 3345432 223344444 67889999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC--CCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEe
Q 029437 96 DAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA--ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMC 173 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
|++++++++.+..|+..+.......+.|+++++||+|+... ...++. ..+.... ..+++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~-~~~~~~~----------------~~~~~~~ 143 (163)
T cd04136 81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEG-QALARQW----------------GCPFYET 143 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHH-HHHHHHc----------------CCeEEEe
Confidence 99999999999998888876555568999999999998632 222221 1111111 1578999
Q ss_pred eeecCCChhhHHHhhhhhc
Q 029437 174 SIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 174 Sa~~g~gv~el~~~i~~~~ 192 (193)
||++|.|++++|++|.+.+
T Consensus 144 Sa~~~~~v~~l~~~l~~~~ 162 (163)
T cd04136 144 SAKSKINVDEVFADLVRQI 162 (163)
T ss_pred cCCCCCCHHHHHHHHHHhc
Confidence 9999999999999998764
No 39
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.97 E-value=5.2e-30 Score=185.46 Aligned_cols=155 Identities=19% Similarity=0.323 Sum_probs=124.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcceeEEEe----CCEEEEEEEcCChhhhHhhHHhhcccCCEEE
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTSEELSI----GKIKFKAFDLGGHQIARRVWKDYYAKVDAVV 92 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~----~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl 92 (193)
+..+||+++|++|||||||++++..+.+.. ..+|.+.......+ ..+.+.+|||+|++.+..++..+++.+|++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 677999999999999999999999888765 56777665444332 3479999999999999999889999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC-CCHHHHHHhhCCCccccCCCccccCCCCCcceEEE
Q 029437 93 YLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA-ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVF 171 (193)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (193)
+|+|++++++++.+..|+..+... ..+.|+++|+||+|+... ...+++ .+.. ...+.++
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~~--~~~~piilvgNK~Dl~~~~v~~~~~--~~~~----------------~~~~~~~ 150 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV--TFHR----------------KKNLQYY 150 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEEchhhhhccCCHHHH--HHHH----------------hcCCEEE
Confidence 999999999999999888887543 358999999999999632 222222 1110 0235789
Q ss_pred EeeeecCCChhhHHHhhhhhc
Q 029437 172 MCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 172 ~~Sa~~g~gv~el~~~i~~~~ 192 (193)
+|||++|.|++++|+||.+.+
T Consensus 151 e~SAk~~~~i~~~f~~l~~~~ 171 (219)
T PLN03071 151 EISAKSNYNFEKPFLYLARKL 171 (219)
T ss_pred EcCCCCCCCHHHHHHHHHHHH
Confidence 999999999999999998764
No 40
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.97 E-value=1.3e-29 Score=176.25 Aligned_cols=155 Identities=21% Similarity=0.271 Sum_probs=121.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccccC-CCCCcce--eEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEEEEE
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKDERLVQHQ-PTQYPTS--EELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYL 94 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~-~t~~~~~--~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v 94 (193)
.+||+++|++|+|||||++++..+.+.... +|.+... ..+..+ .+.+.+||+||++.+......+++++|++++|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 379999999999999999999999876643 3554433 223343 46789999999999999989999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC--CCHHHHHHhhCCCccccCCCccccCCCCCcceEEEE
Q 029437 95 VDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA--ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFM 172 (193)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (193)
+|++++++++.+..|+..+... ..++.|+++++||+|+... ...++..+.... ...++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~e 143 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNL-TNPNTVIFLIGNKADLEAQRDVTYEEAKQFADE-----------------NGLLFLE 143 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccCcCHHHHHHHHHH-----------------cCCEEEE
Confidence 9999999999999998877543 3367999999999999743 233333322211 1257899
Q ss_pred eeeecCCChhhHHHhhhhhc
Q 029437 173 CSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 173 ~Sa~~g~gv~el~~~i~~~~ 192 (193)
|||++|.|++++|.++.+.+
T Consensus 144 ~Sa~~~~~i~e~f~~l~~~~ 163 (166)
T cd04122 144 CSAKTGENVEDAFLETAKKI 163 (166)
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 99999999999999998654
No 41
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.97 E-value=6.5e-30 Score=179.13 Aligned_cols=165 Identities=21% Similarity=0.293 Sum_probs=119.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCccee-EEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEEEEEEE
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDERLV-QHQPTQYPTSE-ELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVD 96 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~-~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d 96 (193)
+||+++|++|+|||||++++..+.|. .+.||.+.... .+..++ +.+.+|||+|++.+..++..+++++|++++|+|
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d 81 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 81 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEE
Confidence 68999999999999999999999885 45577654332 344444 788999999999999888889999999999999
Q ss_pred CCChhhHHHHHH-HHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCcc--ccCCCccccCCCCCcceEEEEe
Q 029437 97 AYDKERFAESKK-ELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNF--TTGKGKVNLADSNVRPLEVFMC 173 (193)
Q Consensus 97 ~~~~~~~~~~~~-~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
++++++++.+.. |...+.. . .++.|+++++||+|+..... ..+.+..... ........+++ ..+.+.+++|
T Consensus 82 ~~~~~s~~~~~~~w~~~i~~-~-~~~~piilvgnK~Dl~~~~~---~~~~l~~~~~~~v~~~~~~~~a~-~~~~~~~~e~ 155 (175)
T cd01874 82 VVSPSSFENVKEKWVPEITH-H-CPKTPFLLVGTQIDLRDDPS---TIEKLAKNKQKPITPETGEKLAR-DLKAVKYVEC 155 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHH-h-CCCCCEEEEEECHhhhhChh---hHHHhhhccCCCcCHHHHHHHHH-HhCCcEEEEe
Confidence 999999999975 5444432 2 35799999999999864321 1112211110 00000000110 1123689999
Q ss_pred eeecCCChhhHHHhhhhh
Q 029437 174 SIVRKMGYGDGFKWLSQY 191 (193)
Q Consensus 174 Sa~~g~gv~el~~~i~~~ 191 (193)
||++|.|++++|+.+.+.
T Consensus 156 SA~tg~~v~~~f~~~~~~ 173 (175)
T cd01874 156 SALTQKGLKNVFDEAILA 173 (175)
T ss_pred cCCCCCCHHHHHHHHHHH
Confidence 999999999999998764
No 42
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.97 E-value=1.3e-29 Score=176.29 Aligned_cols=155 Identities=25% Similarity=0.384 Sum_probs=120.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEe--CCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEE
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSI--GKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLV 95 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~ 95 (193)
+||+++|++|||||||++++.+.++.. ..+|.+... ..+.. ....+++|||||++.+..++..+++.+|++++|+
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 589999999999999999999988765 345555432 23333 3578999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHcCCC----CCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceE
Q 029437 96 DAYDKERFAESKKELDALLSDEA----LANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLE 169 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~----~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
|++++++++.+..|+..+..... ..+.|+++++||+|+.. ....++...... . ...+
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-~----------------~~~~ 143 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAE-S----------------KGFK 143 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHH-H----------------cCCe
Confidence 99999999999888888865433 25799999999999963 223333222111 1 1246
Q ss_pred EEEeeeecCCChhhHHHhhhhhc
Q 029437 170 VFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
++++||++|.|++++|++|.+.+
T Consensus 144 ~~~~Sa~~~~gi~~l~~~l~~~l 166 (168)
T cd04119 144 YFETSACTGEGVNEMFQTLFSSI 166 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998754
No 43
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.97 E-value=4.6e-30 Score=177.95 Aligned_cols=156 Identities=18% Similarity=0.259 Sum_probs=121.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCC-cceeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEEEEEE
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKDERLVQH-QPTQY-PTSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAVVYLV 95 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~t~~-~~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~ 95 (193)
+++|+++|++|+|||||++++..+++... .+|.. .....+..++ ..+.+|||||++++..++..+++++|++++|+
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 47999999999999999999999887653 34433 2233344443 56889999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCC--CHHHHHHhhCCCccccCCCccccCCCCCcceEEEEe
Q 029437 96 DAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAA--SEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMC 173 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
|++++++++++..|+..+.......++|+++++||+|+.... ...+ ...+... ...++++|
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~-~~~~~~~----------------~~~~~~~~ 143 (163)
T cd04176 81 SLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAE-GRALAEE----------------WGCPFMET 143 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHH-HHHHHHH----------------hCCEEEEe
Confidence 999999999999988888765555689999999999986321 2211 1111110 12468999
Q ss_pred eeecCCChhhHHHhhhhhc
Q 029437 174 SIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 174 Sa~~g~gv~el~~~i~~~~ 192 (193)
||++|.|++++|++|.+.+
T Consensus 144 Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd04176 144 SAKSKTMVNELFAEIVRQM 162 (163)
T ss_pred cCCCCCCHHHHHHHHHHhc
Confidence 9999999999999998875
No 44
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.97 E-value=4.2e-30 Score=179.75 Aligned_cols=153 Identities=18% Similarity=0.239 Sum_probs=118.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCccee-EEEe--CCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEE
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTSE-ELSI--GKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVD 96 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d 96 (193)
+||+++|++|+|||||+.++..+.|.. ..||.+.... .+.. ..+.+.+|||+|+++++.+...+++++|++|+|+|
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd 81 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 81 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEE
Confidence 589999999999999999999999875 5677754332 2333 34789999999999999999999999999999999
Q ss_pred CCChhhHHHH-HHHHHHHHcCCCCCCCcEEEEEeCCCCCCC------------CCHHHHHHhhCCCccccCCCccccCCC
Q 029437 97 AYDKERFAES-KKELDALLSDEALANVPFLVLGNKIDIPYA------------ASEEELRYHLGLSNFTTGKGKVNLADS 163 (193)
Q Consensus 97 ~~~~~~~~~~-~~~~~~~~~~~~~~~~pviiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (193)
++++++|+++ ..|+..+... .++.|+++|+||+|+.+. ...++... +....
T Consensus 82 ~~~~~Sf~~~~~~w~~~i~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~-~a~~~------------- 145 (176)
T cd04133 82 LISRASYENVLKKWVPELRHY--APNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEE-LRKQI------------- 145 (176)
T ss_pred cCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHH-HHHHc-------------
Confidence 9999999998 5677766433 258999999999999642 11111111 10000
Q ss_pred CCcceEEEEeeeecCCChhhHHHhhhhh
Q 029437 164 NVRPLEVFMCSIVRKMGYGDGFKWLSQY 191 (193)
Q Consensus 164 ~~~~~~~~~~Sa~~g~gv~el~~~i~~~ 191 (193)
+...+++|||++|.||+++|+.+.+.
T Consensus 146 --~~~~~~E~SAk~~~nV~~~F~~~~~~ 171 (176)
T cd04133 146 --GAAAYIECSSKTQQNVKAVFDAAIKV 171 (176)
T ss_pred --CCCEEEECCCCcccCHHHHHHHHHHH
Confidence 22368999999999999999999875
No 45
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.97 E-value=1.2e-29 Score=175.95 Aligned_cols=157 Identities=18% Similarity=0.254 Sum_probs=121.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc-eeEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEEEEEE
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPT-SEELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLV 95 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~ 95 (193)
.+||+++|++|+|||||++++.+..+.. ..++.... ....... ...+.+|||||++.+..++..+++.+|++++|+
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 81 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVF 81 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEE
Confidence 4799999999999999999999887654 33444322 2223333 367899999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCC--CHHHHHHhhCCCccccCCCccccCCCCCcceEEEEe
Q 029437 96 DAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAA--SEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMC 173 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
|++++.+++.+..|+..+.......+.|+++++||+|+.... ..++...... . ...+++++
T Consensus 82 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~-~----------------~~~~~~~~ 144 (164)
T cd04145 82 SVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELAR-K----------------LKIPYIET 144 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHH-H----------------cCCcEEEe
Confidence 999999999999998888765555689999999999996432 2222221111 0 12468999
Q ss_pred eeecCCChhhHHHhhhhhcC
Q 029437 174 SIVRKMGYGDGFKWLSQYIK 193 (193)
Q Consensus 174 Sa~~g~gv~el~~~i~~~~~ 193 (193)
||++|.|++++|++|.+.++
T Consensus 145 Sa~~~~~i~~l~~~l~~~~~ 164 (164)
T cd04145 145 SAKDRLNVDKAFHDLVRVIR 164 (164)
T ss_pred eCCCCCCHHHHHHHHHHhhC
Confidence 99999999999999988764
No 46
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.97 E-value=7.4e-30 Score=179.49 Aligned_cols=169 Identities=22% Similarity=0.284 Sum_probs=119.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEe--CCEEEEEEEcCChhhhHhhHHhhcccCCEEEE
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSI--GKIKFKAFDLGGHQIARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~ 93 (193)
...+||+++|++|+|||||++++..+.|.. ..||.+... ..+.. ..+.+.+|||+|++.+..+...+++++|++++
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~il 82 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 82 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEE
Confidence 456899999999999999999999998865 456665432 22333 34789999999999999999999999999999
Q ss_pred EEECCChhhHHHH-HHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCH-HHHHHhhCCCccccCCCccccCCCCCcceEEE
Q 029437 94 LVDAYDKERFAES-KKELDALLSDEALANVPFLVLGNKIDIPYAASE-EELRYHLGLSNFTTGKGKVNLADSNVRPLEVF 171 (193)
Q Consensus 94 v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (193)
|+|++++++|+++ ..|+..+... .++.|+++|+||+|+...... .++...... ... ......+++. .+...++
T Consensus 83 vyDit~~~Sf~~~~~~w~~~i~~~--~~~~piilVgNK~DL~~~~~~~~~~~~~~~~-~v~-~~~~~~~a~~-~~~~~~~ 157 (182)
T cd04172 83 CFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDLTTLVELSNHRQT-PVS-YDQGANMAKQ-IGAATYI 157 (182)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEeEChhhhcChhhHHHHHhcCCC-CCC-HHHHHHHHHH-cCCCEEE
Confidence 9999999999997 5666666432 368999999999998532110 000000000 000 0000011111 0224789
Q ss_pred EeeeecCCC-hhhHHHhhhhh
Q 029437 172 MCSIVRKMG-YGDGFKWLSQY 191 (193)
Q Consensus 172 ~~Sa~~g~g-v~el~~~i~~~ 191 (193)
+|||++|.| |+++|+.+.+.
T Consensus 158 E~SAk~~~n~v~~~F~~~~~~ 178 (182)
T cd04172 158 ECSALQSENSVRDIFHVATLA 178 (182)
T ss_pred ECCcCCCCCCHHHHHHHHHHH
Confidence 999999998 99999998764
No 47
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.8e-29 Score=162.81 Aligned_cols=165 Identities=33% Similarity=0.578 Sum_probs=152.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEE
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVD 96 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d 96 (193)
..++++|+.+|-.++||||++..+.........||++.+.+.+.+.++++++||.+|+++.+.++.++++...++|+|+|
T Consensus 14 ~~KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvGFnvetVtykN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV~D 93 (180)
T KOG0071|consen 14 GNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVD 93 (180)
T ss_pred CcccceEEEEecccCCceehhhHHhcCCCcccccccceeEEEEEeeeeEEeeeeccCchhhhHHHHhhccCCceEEEEEe
Confidence 45689999999999999999999999988889999999999999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeee
Q 029437 97 AYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIV 176 (193)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 176 (193)
+.+.+.+++.+..+..++++..+.+.|+++.+||.|++.+..+.|+.+.+++..++ .+.+-+.+|||.
T Consensus 94 sa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r------------~~~W~vqp~~a~ 161 (180)
T KOG0071|consen 94 SADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIR------------DRNWYVQPSCAL 161 (180)
T ss_pred ccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhcccccc------------CCccEeeccccc
Confidence 99999999999999999999999999999999999999999999999999987721 134567899999
Q ss_pred cCCChhhHHHhhhhhcC
Q 029437 177 RKMGYGDGFKWLSQYIK 193 (193)
Q Consensus 177 ~g~gv~el~~~i~~~~~ 193 (193)
+|.|+.|.+.||..-++
T Consensus 162 ~gdgL~eglswlsnn~~ 178 (180)
T KOG0071|consen 162 SGDGLKEGLSWLSNNLK 178 (180)
T ss_pred cchhHHHHHHHHHhhcc
Confidence 99999999999987653
No 48
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.97 E-value=9.3e-29 Score=170.12 Aligned_cols=156 Identities=34% Similarity=0.577 Sum_probs=129.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChh
Q 029437 23 ILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKE 101 (193)
Q Consensus 23 i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~ 101 (193)
|+++|++|||||||++++.+.++.. ..||.+.....+..+...+.+||+||+..++..+..++..+|++++|+|++++.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 81 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRT 81 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHH
Confidence 7899999999999999999988765 556777777777778899999999999999999999999999999999999998
Q ss_pred hHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCCh
Q 029437 102 RFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGY 181 (193)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv 181 (193)
++.....++..+.......++|+++++||+|+.......+....+..... ......++++|+++|.|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~Sa~~~~gi 149 (159)
T cd04159 82 ALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSI------------TDREVSCYSISCKEKTNI 149 (159)
T ss_pred HHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccc------------cCCceEEEEEEeccCCCh
Confidence 88888888888876655578999999999999765555555555443321 113467899999999999
Q ss_pred hhHHHhhhh
Q 029437 182 GDGFKWLSQ 190 (193)
Q Consensus 182 ~el~~~i~~ 190 (193)
++++++|.+
T Consensus 150 ~~l~~~l~~ 158 (159)
T cd04159 150 DIVLDWLIK 158 (159)
T ss_pred HHHHHHHhh
Confidence 999999965
No 49
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.97 E-value=1.3e-29 Score=175.86 Aligned_cols=155 Identities=21% Similarity=0.276 Sum_probs=119.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCc-ceeEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEE
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDERLVQH-QPTQYP-TSEELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVD 96 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~t~~~-~~~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d 96 (193)
+||+++|++|||||||++++.+..+... .+|... .......+ ...+.+|||||++++..++..+++.+|++++|+|
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence 4899999999999999999998887653 333332 22233333 4688999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCC--CHHHHHHhhCCCccccCCCccccCCCCCcceEEEEee
Q 029437 97 AYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAA--SEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCS 174 (193)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 174 (193)
+++++++..+..|+..+.......+.|+++++||+|+.... ..++...... .. ..++++||
T Consensus 81 ~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~-~~----------------~~~~~~~S 143 (164)
T smart00173 81 ITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELAR-QW----------------GCPFLETS 143 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHH-Hc----------------CCEEEEee
Confidence 99999999998888887665555689999999999997422 2222211111 11 15789999
Q ss_pred eecCCChhhHHHhhhhhc
Q 029437 175 IVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 175 a~~g~gv~el~~~i~~~~ 192 (193)
|++|.|++++|++|.+.+
T Consensus 144 a~~~~~i~~l~~~l~~~~ 161 (164)
T smart00173 144 AKERVNVDEAFYDLVREI 161 (164)
T ss_pred cCCCCCHHHHHHHHHHHH
Confidence 999999999999998765
No 50
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.97 E-value=3e-29 Score=174.57 Aligned_cols=156 Identities=20% Similarity=0.269 Sum_probs=122.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCcce--eEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEEEE
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQH-QPTQYPTS--EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~~--~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~ 93 (193)
..+||+++|++|+|||||++++.+.+|... .+|.+... ..+.+.+ +.+.+||+||++.+......+++++|++++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 458999999999999999999999887653 45555432 3344443 678999999999999888889999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC--CCHHHHHHhhCCCccccCCCccccCCCCCcceEEE
Q 029437 94 LVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA--ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVF 171 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (193)
|+|++++++++.+..|+..+... ...+.|+++++||+|+... ...++....... ...+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~ 143 (167)
T cd01867 82 VYDITDEKSFENIRNWMRNIEEH-ASEDVERMLVGNKCDMEEKRVVSKEEGEALADE-----------------YGIKFL 143 (167)
T ss_pred EEECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEECcccccccCCCHHHHHHHHHH-----------------cCCEEE
Confidence 99999999999999988877543 3368999999999999732 233332222211 124689
Q ss_pred EeeeecCCChhhHHHhhhhhc
Q 029437 172 MCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 172 ~~Sa~~g~gv~el~~~i~~~~ 192 (193)
++||++|.|++++|++|.+++
T Consensus 144 ~~Sa~~~~~v~~~~~~i~~~~ 164 (167)
T cd01867 144 ETSAKANINVEEAFFTLAKDI 164 (167)
T ss_pred EEeCCCCCCHHHHHHHHHHHH
Confidence 999999999999999998865
No 51
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.97 E-value=4.1e-29 Score=172.90 Aligned_cols=153 Identities=19% Similarity=0.311 Sum_probs=120.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEEEEEE
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAVVYLV 95 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~ 95 (193)
++|+++|++|+|||||++++..+++.+ ..+|.+... ..+...+ ..+.+||++|++.+......++..+|++++|+
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 489999999999999999999998865 356666533 3444444 67899999999999998888999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCC--CHHHHHHhhCCCccccCCCccccCCCCCcceEEEEe
Q 029437 96 DAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAA--SEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMC 173 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
|++++++++.+..|+..+... ...+.|+++++||.|+.... ..++.. .+... ...++++|
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~v~~~~~~-~~~~~----------------~~~~~~e~ 142 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEY-APEGVQKILIGNKADEEQKRQVGDEQGN-KLAKE----------------YGMDFFET 142 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccCCCHHHHH-HHHHH----------------cCCEEEEE
Confidence 999999999999988877543 33579999999999986332 222211 11111 11468999
Q ss_pred eeecCCChhhHHHhhhhh
Q 029437 174 SIVRKMGYGDGFKWLSQY 191 (193)
Q Consensus 174 Sa~~g~gv~el~~~i~~~ 191 (193)
||++|.|++++|++|.+.
T Consensus 143 Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 143 SACTNSNIKESFTRLTEL 160 (161)
T ss_pred eCCCCCCHHHHHHHHHhh
Confidence 999999999999999865
No 52
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.97 E-value=1.2e-29 Score=177.66 Aligned_cols=169 Identities=17% Similarity=0.259 Sum_probs=118.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEEEEEE
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLV 95 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~ 95 (193)
++||+++|++|||||||+.++..+.|.. ..||..... ..+..+ ...+.+|||+|++.+..++..++.++|++|+|+
T Consensus 1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 3689999999999999999999988764 456654322 223333 378899999999999998888999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCC-CHHHHHHhhCCCccccCCCccccCCCCCcceEEEEee
Q 029437 96 DAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAA-SEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCS 174 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 174 (193)
|++++++++.+...|...+... .++.|+++++||+|+.... ..+.+..... ... .......++.. .+.+.+++||
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~-~~~~piilvgnK~Dl~~~~~~~~~~~~~~~-~~v-~~~~~~~~~~~-~~~~~~~e~S 156 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHH-CPNTPIILVGTKLDLRDDKDTIEKLKEKKL-TPI-TYPQGLAMAKE-IGAVKYLECS 156 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEeeChhhccChhhHHHHhhccC-CCC-CHHHHHHHHHH-cCCcEEEEec
Confidence 9999999999975444333332 3589999999999996321 1222211100 000 00000001111 1235789999
Q ss_pred eecCCChhhHHHhhhhhc
Q 029437 175 IVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 175 a~~g~gv~el~~~i~~~~ 192 (193)
|++|.|++++|+.+.+.+
T Consensus 157 a~~~~~i~~~f~~l~~~~ 174 (174)
T cd01871 157 ALTQKGLKTVFDEAIRAV 174 (174)
T ss_pred ccccCCHHHHHHHHHHhC
Confidence 999999999999998653
No 53
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=5.4e-29 Score=172.98 Aligned_cols=157 Identities=22% Similarity=0.284 Sum_probs=121.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCc--ceeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEEEE
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQH-QPTQYP--TSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~t~~~--~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~ 93 (193)
+.+||+++|++|+|||||++++....+... .++.+. ....+.+++ ..+.+||+||++.+.......++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 458999999999999999999998877653 344432 334455555 688999999999999888889999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC--CCHHHHHHhhCCCccccCCCccccCCCCCcceEEE
Q 029437 94 LVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA--ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVF 171 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (193)
|+|++++.+++.+..|+..+... ...++|+++|+||+|+... ...++...... .. ....++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~~---------------~~~~~~ 144 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKY-GASNVVLLLIGNKCDLEEQREVLFEEACTLAE-KN---------------GMLAVL 144 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHHHHH-Hc---------------CCcEEE
Confidence 99999999999998888887543 3468999999999999732 22222222111 11 224689
Q ss_pred EeeeecCCChhhHHHhhhhhc
Q 029437 172 MCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 172 ~~Sa~~g~gv~el~~~i~~~~ 192 (193)
++||++|.|++++|++|.+.+
T Consensus 145 e~Sa~~~~~v~~~~~~l~~~l 165 (165)
T cd01864 145 ETSAKESQNVEEAFLLMATEL 165 (165)
T ss_pred EEECCCCCCHHHHHHHHHHhC
Confidence 999999999999999998764
No 54
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2e-29 Score=174.14 Aligned_cols=156 Identities=22% Similarity=0.342 Sum_probs=127.3
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhcCCccccCC-CCCc--ceeEEEe--CCEEEEEEEcCChhhhHhhHHhhcccCCE
Q 029437 16 LWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQP-TQYP--TSEELSI--GKIKFKAFDLGGHQIARRVWKDYYAKVDA 90 (193)
Q Consensus 16 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~-t~~~--~~~~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 90 (193)
.+...++|+++|++|||||+++.++....|..... |+++ ....+.. ..+.+++|||+|+++++.+...+++++++
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g 87 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG 87 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence 46778999999999999999999999999876443 4443 3444444 45789999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHH---HHHhhCCCccccCCCccccCCCCC
Q 029437 91 VVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEE---LRYHLGLSNFTTGKGKVNLADSNV 165 (193)
Q Consensus 91 vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 165 (193)
+++|+|+++..+|+++..|+..+ ++....++|.++|+||+|+.. .++.++ +...++
T Consensus 88 i~LvyDitne~Sfeni~~W~~~I-~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G------------------ 148 (207)
T KOG0078|consen 88 ILLVYDITNEKSFENIRNWIKNI-DEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYG------------------ 148 (207)
T ss_pred eEEEEEccchHHHHHHHHHHHHH-HhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhC------------------
Confidence 99999999999999999976666 445556999999999999973 333332 444443
Q ss_pred cceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 166 RPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 166 ~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
+.++++||++|.||+|.|-.|.+.+
T Consensus 149 --~~F~EtSAk~~~NI~eaF~~La~~i 173 (207)
T KOG0078|consen 149 --IKFFETSAKTNFNIEEAFLSLARDI 173 (207)
T ss_pred --CeEEEccccCCCCHHHHHHHHHHHH
Confidence 4669999999999999998887654
No 55
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.97 E-value=1.1e-29 Score=165.05 Aligned_cols=173 Identities=35% Similarity=0.610 Sum_probs=156.1
Q ss_pred HHHHHHHHHhhCCCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHH
Q 029437 4 LDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWK 82 (193)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~ 82 (193)
+.|+.+.+ .+.++.+.++|-.+||||||.+.+..+.+.+ ..||++.+...+.-++..+.+||.||+++++.++.
T Consensus 9 L~wi~~~f-----~k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~tkgnvtiklwD~gGq~rfrsmWe 83 (186)
T KOG0075|consen 9 LVWICNSF-----WKEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWE 83 (186)
T ss_pred HHHHHHHH-----HHheeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEEeccCceEEEEEecCCCccHHHHHH
Confidence 45555555 6777899999999999999999999888776 56899999999999999999999999999999999
Q ss_pred hhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCC
Q 029437 83 DYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLAD 162 (193)
Q Consensus 83 ~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (193)
.+.+.+++++||+|+++++..+..++.+..++......++|+++++||.|++++.+..++-+.+++..+ .
T Consensus 84 rycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~si---------t- 153 (186)
T KOG0075|consen 84 RYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSI---------T- 153 (186)
T ss_pred HHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCcccc---------c-
Confidence 999999999999999999999999999999999999999999999999999999999999999987772 2
Q ss_pred CCCcceEEEEeeeecCCChhhHHHhhhhhcC
Q 029437 163 SNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK 193 (193)
Q Consensus 163 ~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~~ 193 (193)
.+.+-.+.+|+++..|++.+.+||.++.+
T Consensus 154 --dREvcC~siScke~~Nid~~~~Wli~hsk 182 (186)
T KOG0075|consen 154 --DREVCCFSISCKEKVNIDITLDWLIEHSK 182 (186)
T ss_pred --cceEEEEEEEEcCCccHHHHHHHHHHHhh
Confidence 25577899999999999999999998753
No 56
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.97 E-value=6.4e-29 Score=172.15 Aligned_cols=155 Identities=21% Similarity=0.335 Sum_probs=122.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEEEEE
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPT--SEELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYL 94 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v 94 (193)
++||+++|++|||||||++++.+.++.. ..++.+.. ...+.++ .+.+.+||+||++++......+++.+|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 4799999999999999999999998776 55665532 2333443 47899999999999988888889999999999
Q ss_pred EECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEE
Q 029437 95 VDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFM 172 (193)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (193)
+|+++++++.....|+..+..... ++.|+++++||+|+.. ....++...... .. ...+++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-~~----------------~~~~~~ 142 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNAS-PNIIIALVGNKADLESKRQVSTEEAQEYAD-EN----------------GLLFFE 142 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECccccccCcCCHHHHHHHHH-Hc----------------CCEEEE
Confidence 999999999999988888865543 6899999999999873 223333222211 11 156899
Q ss_pred eeeecCCChhhHHHhhhhhc
Q 029437 173 CSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 173 ~Sa~~g~gv~el~~~i~~~~ 192 (193)
+||++|.|+++++++|.+.+
T Consensus 143 ~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 143 TSAKTGENVNELFTEIAKKL 162 (163)
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 99999999999999998875
No 57
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.97 E-value=4e-29 Score=172.26 Aligned_cols=151 Identities=19% Similarity=0.230 Sum_probs=114.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccccC-CCCCcceeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEEEEEEEC
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDERLVQHQ-PTQYPTSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDA 97 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~-~t~~~~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~ 97 (193)
+||+++|++|+|||||+.++..+.|.+.. |+.+.....+..++ ..+.+||++|++.. .+++.+|++++|+|+
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~~-----~~~~~~~~~ilv~d~ 75 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPDA-----QFASWVDAVIFVFSL 75 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccceEEEEEECCEEEEEEEEECCCCCch-----hHHhcCCEEEEEEEC
Confidence 48999999999999999999988877643 33333334555555 67999999999752 345789999999999
Q ss_pred CChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC----CCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEe
Q 029437 98 YDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY----AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMC 173 (193)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
+++++|+++..|+..+......++.|+++++||.|+.. ....++. +++.... ..+.+++|
T Consensus 76 ~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~-~~~~~~~---------------~~~~~~e~ 139 (158)
T cd04103 76 ENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARA-RQLCADM---------------KRCSYYET 139 (158)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHH-HHHHHHh---------------CCCcEEEE
Confidence 99999999999988887655556899999999999842 1222211 1111011 23678999
Q ss_pred eeecCCChhhHHHhhhhhc
Q 029437 174 SIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 174 Sa~~g~gv~el~~~i~~~~ 192 (193)
||++|.||+++|+.+.+.+
T Consensus 140 SAk~~~~i~~~f~~~~~~~ 158 (158)
T cd04103 140 CATYGLNVERVFQEAAQKI 158 (158)
T ss_pred ecCCCCCHHHHHHHHHhhC
Confidence 9999999999999998653
No 58
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.97 E-value=9.8e-29 Score=171.68 Aligned_cols=154 Identities=21% Similarity=0.293 Sum_probs=119.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEEEEEE
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLV 95 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~ 95 (193)
+||+++|++|||||||++++.+.++.. ..+|.+... ..+... ...+.+||++|++.+..++..+++.+|++++|+
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 689999999999999999999998865 345555322 233332 368999999999999999899999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCC--CHHHHHHhhCCCccccCCCccccCCCCCcceEEEEe
Q 029437 96 DAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAA--SEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMC 173 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
|++++++++.+..|+..+.. ....+.|+++++||+|+.... ..++..+... . ....++++
T Consensus 82 d~~~~~s~~~~~~~~~~i~~-~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~-~----------------~~~~~~~~ 143 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKT-YSWDNAQVILVGNKCDMEDERVVSSERGRQLAD-Q----------------LGFEFFEA 143 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHH-hCCCCCCEEEEEECcccCcccccCHHHHHHHHH-H----------------cCCEEEEE
Confidence 99999999999988887743 333578999999999996432 2222221111 0 11368999
Q ss_pred eeecCCChhhHHHhhhhhc
Q 029437 174 SIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 174 Sa~~g~gv~el~~~i~~~~ 192 (193)
||++|.|++++|++|.+.+
T Consensus 144 Sa~~~~gv~~l~~~l~~~~ 162 (165)
T cd01865 144 SAKENINVKQVFERLVDII 162 (165)
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 9999999999999998754
No 59
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.97 E-value=6.3e-29 Score=173.41 Aligned_cols=159 Identities=20% Similarity=0.271 Sum_probs=122.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEe--CCEEEEEEEcCChhhhHhhHHhhcccCCEEE
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSI--GKIKFKAFDLGGHQIARRVWKDYYAKVDAVV 92 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl 92 (193)
...+||+++|++|+|||||++++.+..+.. ..++.+... ..+.. ....+.+||+||++++..++..+++.+|+++
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 82 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL 82 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence 345899999999999999999999888765 334554432 23333 3467899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHcCCC---CCCCcEEEEEeCCCCCC-CCCHHHHHHhhCCCccccCCCccccCCCCCcce
Q 029437 93 YLVDAYDKERFAESKKELDALLSDEA---LANVPFLVLGNKIDIPY-AASEEELRYHLGLSNFTTGKGKVNLADSNVRPL 168 (193)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~pviiv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (193)
+|+|++++++++.+..|...+..... ..+.|+++++||+|+.. ....++..+... .. ...
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-~~---------------~~~ 146 (170)
T cd04116 83 LTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCR-EN---------------GDY 146 (170)
T ss_pred EEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHH-HC---------------CCC
Confidence 99999999999999888887765322 35789999999999963 334444333221 11 224
Q ss_pred EEEEeeeecCCChhhHHHhhhhhc
Q 029437 169 EVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 169 ~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
.++++||++|.|++++|+++.+.+
T Consensus 147 ~~~e~Sa~~~~~v~~~~~~~~~~~ 170 (170)
T cd04116 147 PYFETSAKDATNVAAAFEEAVRRV 170 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhC
Confidence 689999999999999999998754
No 60
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.97 E-value=8e-29 Score=177.05 Aligned_cols=156 Identities=21% Similarity=0.329 Sum_probs=122.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEEE
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAVV 92 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl 92 (193)
...++|+++|++|+|||||++++.+.++.. ..+|.+... ..+..+ ...+.+||+||++.+..++..++..+++++
T Consensus 4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii 83 (199)
T cd04110 4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI 83 (199)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence 456899999999999999999999988764 456665432 333333 367899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCC--CHHHHHHhhCCCccccCCCccccCCCCCcceEE
Q 029437 93 YLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAA--SEEELRYHLGLSNFTTGKGKVNLADSNVRPLEV 170 (193)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (193)
+|+|++++++++.+..|+..+... ....|+++++||+|+.... ..++...... . ....+
T Consensus 84 lv~D~~~~~s~~~~~~~~~~i~~~--~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~-~----------------~~~~~ 144 (199)
T cd04110 84 VVYDVTNGESFVNVKRWLQEIEQN--CDDVCKVLVGNKNDDPERKVVETEDAYKFAG-Q----------------MGISL 144 (199)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECcccccccccCHHHHHHHHH-H----------------cCCEE
Confidence 999999999999999888877543 3578999999999997432 2222222111 1 12568
Q ss_pred EEeeeecCCChhhHHHhhhhhc
Q 029437 171 FMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 171 ~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
+++||++|.|++++|++|.+.+
T Consensus 145 ~e~Sa~~~~gi~~lf~~l~~~~ 166 (199)
T cd04110 145 FETSAKENINVEEMFNCITELV 166 (199)
T ss_pred EEEECCCCcCHHHHHHHHHHHH
Confidence 9999999999999999998753
No 61
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.97 E-value=1.4e-28 Score=171.07 Aligned_cols=155 Identities=22% Similarity=0.291 Sum_probs=120.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEEEEE
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPT--SEELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYL 94 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v 94 (193)
.+||+++|++|||||||++++.+..+.. ..+|.+.. ...+... ...+.+||+||++.+..+...+++.+|++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 3799999999999999999999888764 33454432 2334443 36789999999999999888999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC--CCHHHHHHhhCCCccccCCCccccCCCCCcceEEEE
Q 029437 95 VDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA--ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFM 172 (193)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (193)
+|+++++++.++..|+..+... ...+.|+++++||+|+... ...++...... . ..+++++
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~-~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~-~----------------~~~~~~~ 143 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTDKRVVDYSEAQEFAD-E----------------LGIPFLE 143 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEEChhcccccCCCHHHHHHHHH-H----------------cCCeEEE
Confidence 9999999999999988877443 3357999999999998633 22233222111 1 1247899
Q ss_pred eeeecCCChhhHHHhhhhhc
Q 029437 173 CSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 173 ~Sa~~g~gv~el~~~i~~~~ 192 (193)
+||++|.|++++|++|.+.+
T Consensus 144 ~Sa~~~~~v~~~~~~i~~~~ 163 (166)
T cd01869 144 TSAKNATNVEQAFMTMAREI 163 (166)
T ss_pred EECCCCcCHHHHHHHHHHHH
Confidence 99999999999999998765
No 62
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=5.4e-29 Score=180.44 Aligned_cols=169 Identities=20% Similarity=0.238 Sum_probs=117.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEe--CCEEEEEEEcCChhhhHhhHHhhcccCCEEEE
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSI--GKIKFKAFDLGGHQIARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~ 93 (193)
...+||+++|++|+|||||++++....|.. +.||.+... ..+.. ..+.+.+|||+|++.+..+...+++++|++++
T Consensus 11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIl 90 (232)
T cd04174 11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLL 90 (232)
T ss_pred eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEE
Confidence 356899999999999999999999988875 456665432 22333 34789999999999999999999999999999
Q ss_pred EEECCChhhHHHH-HHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCH-HHHHHhhCCCccccCCCccccCCCCCcceEEE
Q 029437 94 LVDAYDKERFAES-KKELDALLSDEALANVPFLVLGNKIDIPYAASE-EELRYHLGLSNFTTGKGKVNLADSNVRPLEVF 171 (193)
Q Consensus 94 v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (193)
|+|++++++|+.+ ..|+..+... .++.|+++|+||+|+...... .++..... .... ......+++.. ....++
T Consensus 91 VyDit~~~Sf~~~~~~w~~~i~~~--~~~~piilVgNK~DL~~~~~~~~~l~~~~~-~~Vs-~~e~~~~a~~~-~~~~~~ 165 (232)
T cd04174 91 CFDISRPETVDSALKKWKAEIMDY--CPSTRILLIGCKTDLRTDLSTLMELSNQKQ-APIS-YEQGCALAKQL-GAEVYL 165 (232)
T ss_pred EEECCChHHHHHHHHHHHHHHHHh--CCCCCEEEEEECcccccccchhhhhccccC-CcCC-HHHHHHHHHHc-CCCEEE
Confidence 9999999999985 5666666432 257899999999998532110 00000000 0000 00000111110 222689
Q ss_pred EeeeecCC-ChhhHHHhhhhh
Q 029437 172 MCSIVRKM-GYGDGFKWLSQY 191 (193)
Q Consensus 172 ~~Sa~~g~-gv~el~~~i~~~ 191 (193)
+|||++|. ||+++|+.+.+.
T Consensus 166 EtSAktg~~~V~e~F~~~~~~ 186 (232)
T cd04174 166 ECSAFTSEKSIHSIFRSASLL 186 (232)
T ss_pred EccCCcCCcCHHHHHHHHHHH
Confidence 99999998 899999998764
No 63
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=2.4e-29 Score=176.52 Aligned_cols=166 Identities=22% Similarity=0.239 Sum_probs=116.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEe--CCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEE
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSI--GKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVD 96 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d 96 (193)
+||+++|++|+|||||++++.+..|.. +.||.+... ..+.. ..+.+.+|||+|++.+..+.+.+++++|++++|+|
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfd 81 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICFD 81 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEEE
Confidence 689999999999999999999998865 446654332 22333 34789999999999999988899999999999999
Q ss_pred CCChhhHHHH-HHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC-HHHHHHhhCCCccccCCCccccCCCCCcceEEEEee
Q 029437 97 AYDKERFAES-KKELDALLSDEALANVPFLVLGNKIDIPYAAS-EEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCS 174 (193)
Q Consensus 97 ~~~~~~~~~~-~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 174 (193)
++++++|+++ ..|+..+... .++.|+++|+||+|+..... ..++..... ..... .....+++. .....+++||
T Consensus 82 it~~~Sf~~~~~~w~~~i~~~--~~~~~iilVgnK~DL~~~~~~~~~~~~~~~-~~v~~-~e~~~~a~~-~~~~~~~E~S 156 (178)
T cd04131 82 ISRPETLDSVLKKWRGEIQEF--CPNTKVLLVGCKTDLRTDLSTLMELSHQRQ-APVSY-EQGCAIAKQ-LGAEIYLECS 156 (178)
T ss_pred CCChhhHHHHHHHHHHHHHHH--CCCCCEEEEEEChhhhcChhHHHHHHhcCC-CCCCH-HHHHHHHHH-hCCCEEEECc
Confidence 9999999996 5666666432 35899999999999953211 000100000 00000 000011111 0223789999
Q ss_pred eecCCC-hhhHHHhhhhh
Q 029437 175 IVRKMG-YGDGFKWLSQY 191 (193)
Q Consensus 175 a~~g~g-v~el~~~i~~~ 191 (193)
|++|+| |+++|+.+.+.
T Consensus 157 A~~~~~~v~~~F~~~~~~ 174 (178)
T cd04131 157 AFTSEKSVRDIFHVATMA 174 (178)
T ss_pred cCcCCcCHHHHHHHHHHH
Confidence 999995 99999988763
No 64
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.97 E-value=1.3e-29 Score=170.66 Aligned_cols=160 Identities=19% Similarity=0.302 Sum_probs=128.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeE--EEeCCEEEEEEEcCChhhhHhhHHhhcccCCEE
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPT--SEE--LSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~--~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~v 91 (193)
...-+||.++|++|+|||||++++...+|.+ ...|++.. ... +...-..+++|||+|+++++++.-.+++++|+.
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcC 85 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCC 85 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceE
Confidence 3566899999999999999999999999876 45566643 223 333347899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHcCCCC---CCCcEEEEEeCCCCCCCC---CHHHHHHhhCCCccccCCCccccCCCCC
Q 029437 92 VYLVDAYDKERFAESKKELDALLSDEAL---ANVPFLVLGNKIDIPYAA---SEEELRYHLGLSNFTTGKGKVNLADSNV 165 (193)
Q Consensus 92 l~v~d~~~~~~~~~~~~~~~~~~~~~~~---~~~pviiv~nK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (193)
++|+|++++.+|+.+..|..+++..... ...|.|+++||+|+.... .-.+....+-...
T Consensus 86 vlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~--------------- 150 (210)
T KOG0394|consen 86 VLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSK--------------- 150 (210)
T ss_pred EEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhc---------------
Confidence 9999999999999999999999876543 368999999999996421 1222333332222
Q ss_pred cceEEEEeeeecCCChhhHHHhhhhh
Q 029437 166 RPLEVFMCSIVRKMGYGDGFKWLSQY 191 (193)
Q Consensus 166 ~~~~~~~~Sa~~g~gv~el~~~i~~~ 191 (193)
+.+++|++|||.+.||.+.|+.+.+.
T Consensus 151 gnipyfEtSAK~~~NV~~AFe~ia~~ 176 (210)
T KOG0394|consen 151 GNIPYFETSAKEATNVDEAFEEIARR 176 (210)
T ss_pred CCceeEEecccccccHHHHHHHHHHH
Confidence 56889999999999999999988764
No 65
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.97 E-value=9e-29 Score=172.59 Aligned_cols=154 Identities=18% Similarity=0.254 Sum_probs=119.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEE
Q 029437 22 KILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVD 96 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d 96 (193)
||+++|++|||||||++++.++.|.. +.||.+... ..+... ...+++|||||++++..+...+++++|++++|+|
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 79999999999999999999998864 456665443 233333 3679999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCH---HHHHHhhCCCccccCCCccccCCCCCcceEEEEe
Q 029437 97 AYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASE---EELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMC 173 (193)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
+++++++..+..|+..+.......+.|+++|+||+|+...... ++....+... ...+++++
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~----------------~~~~~~e~ 145 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAE----------------MQAEYWSV 145 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHH----------------cCCeEEEE
Confidence 9999999999998888866544446789999999998643211 1111111111 12468999
Q ss_pred eeecCCChhhHHHhhhhh
Q 029437 174 SIVRKMGYGDGFKWLSQY 191 (193)
Q Consensus 174 Sa~~g~gv~el~~~i~~~ 191 (193)
||++|.|++++|+.|.+.
T Consensus 146 Sa~~g~~v~~lf~~l~~~ 163 (170)
T cd04108 146 SALSGENVREFFFRVAAL 163 (170)
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 999999999999998764
No 66
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.97 E-value=8.6e-29 Score=174.36 Aligned_cols=157 Identities=20% Similarity=0.235 Sum_probs=119.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEEEEEE
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAVVYLV 95 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~ 95 (193)
+||+++|++|+|||||++++..+.|.. +.||.+... ..+..++ +.+.+||++|++.+..++..+++++|++++|+
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 589999999999999999999998876 567776544 3444444 78999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHH---HHHhhCCCccccCCCccccCCCCCcceEEEE
Q 029437 96 DAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEE---LRYHLGLSNFTTGKGKVNLADSNVRPLEVFM 172 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (193)
|++++++++++..|+..+... .....| ++|+||+|+......++ ..++ ...+ ++. ....+++
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~-~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~-~~~~----------a~~--~~~~~~e 145 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGF-NKTAIP-ILVGTKYDLFADLPPEEQEEITKQ-ARKY----------AKA--MKAPLIF 145 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHh-CCCCCE-EEEEEchhccccccchhhhhhHHH-HHHH----------HHH--cCCEEEE
Confidence 999999999999988887543 223566 68899999964221111 1110 0000 000 1257899
Q ss_pred eeeecCCChhhHHHhhhhhc
Q 029437 173 CSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 173 ~Sa~~g~gv~el~~~i~~~~ 192 (193)
|||++|.|++++|++|.+.+
T Consensus 146 ~SAk~g~~v~~lf~~l~~~l 165 (182)
T cd04128 146 CSTSHSINVQKIFKIVLAKA 165 (182)
T ss_pred EeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999998654
No 67
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.97 E-value=2.8e-28 Score=169.28 Aligned_cols=155 Identities=22% Similarity=0.292 Sum_probs=121.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEEEEE
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPT--SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAVVYL 94 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v 94 (193)
.++|+++|++|||||||++++.+.++.. ..|+.+.. ...+..++ ..+.+||+||+..+..+...+++.++++++|
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 82 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 82 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence 3799999999999999999999888764 44565543 33344444 5789999999999999889899999999999
Q ss_pred EECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC--CCHHHHHHhhCCCccccCCCccccCCCCCcceEEEE
Q 029437 95 VDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA--ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFM 172 (193)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (193)
+|++++.+++.+..|+..+.... ..+.|+++++||.|+... ...++....... ..+.+++
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~ 144 (165)
T cd01868 83 YDITKKQTFENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEK-----------------NGLSFIE 144 (165)
T ss_pred EECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECccccccccCCHHHHHHHHHH-----------------cCCEEEE
Confidence 99999999999998888775432 346899999999998632 222332222211 1257899
Q ss_pred eeeecCCChhhHHHhhhhhc
Q 029437 173 CSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 173 ~Sa~~g~gv~el~~~i~~~~ 192 (193)
+||++|.|++++|++|.+.+
T Consensus 145 ~Sa~~~~~v~~l~~~l~~~i 164 (165)
T cd01868 145 TSALDGTNVEEAFKQLLTEI 164 (165)
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 99999999999999998875
No 68
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=1.1e-28 Score=177.72 Aligned_cols=156 Identities=22% Similarity=0.336 Sum_probs=122.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCcce--eEEEe---CCEEEEEEEcCChhhhHhhHHhhcccCCEEEE
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKDERLVQH-QPTQYPTS--EELSI---GKIKFKAFDLGGHQIARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~~--~~~~~---~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~ 93 (193)
.+||+++|++|+|||||++++.+..+... .+|.+... ..+.. ..+.+.+|||+|++.+..+...+++.+|++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 47999999999999999999999887653 45555432 22332 24689999999999999988899999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC--CCHHHHHHhhCCCccccCCCccccCCCCCcceEEE
Q 029437 94 LVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA--ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVF 171 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (193)
|+|++++++++++..|+..+.........|+++++||.|+... ...++. ..+... ..+.++
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~-~~~~~~----------------~~~~~~ 144 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEA-EKLAKD----------------LGMKYI 144 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHH-HHHHHH----------------hCCEEE
Confidence 9999999999999999998876544456789999999999742 222222 111111 125789
Q ss_pred EeeeecCCChhhHHHhhhhhc
Q 029437 172 MCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 172 ~~Sa~~g~gv~el~~~i~~~~ 192 (193)
+|||++|.|++++|++|.+.+
T Consensus 145 e~Sak~g~~v~e~f~~l~~~~ 165 (211)
T cd04111 145 ETSARTGDNVEEAFELLTQEI 165 (211)
T ss_pred EEeCCCCCCHHHHHHHHHHHH
Confidence 999999999999999998754
No 69
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.97 E-value=1.5e-28 Score=177.63 Aligned_cols=155 Identities=18% Similarity=0.251 Sum_probs=119.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEEeC---CEEEEEEEcCChhhhHhhHHhhcccCCEEEEE
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPT--SEELSIG---KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYL 94 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~---~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v 94 (193)
+||+++|++|||||||++++.+..+.. +.||.+.. ...+..+ ...+.+|||+|++.+..+...+++.+|++++|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 589999999999999999999888765 45666543 3334443 47899999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHcCCC--CCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceEE
Q 029437 95 VDAYDKERFAESKKELDALLSDEA--LANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEV 170 (193)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~--~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (193)
+|++++++++.+..|+..+..... ..+.|+++|+||.|+.. ....++... +... ....+
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~-~~~~----------------~~~~~ 143 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHAR-FAQA----------------NGMES 143 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHH-HHHH----------------cCCEE
Confidence 999999999999888777754332 24578999999999963 222222211 1111 11467
Q ss_pred EEeeeecCCChhhHHHhhhhhc
Q 029437 171 FMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 171 ~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
+++||++|.|++++|++|.+.+
T Consensus 144 ~~iSAktg~gv~~lf~~l~~~l 165 (215)
T cd04109 144 CLVSAKTGDRVNLLFQQLAAEL 165 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999998764
No 70
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.96 E-value=1.1e-28 Score=170.76 Aligned_cols=153 Identities=17% Similarity=0.305 Sum_probs=118.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEe----CCEEEEEEEcCChhhhHhhHHhhcccCCEEEE
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSI----GKIKFKAFDLGGHQIARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~----~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~ 93 (193)
+||+++|++|+|||||++++.+..+.. ..+|.+... ..+.. ....+.+|||||++.+......+++.+|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 489999999999999999999987764 345554433 22333 24789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC--CCHHHHHHhhCCCccccCCCccccCCCCCcceEEE
Q 029437 94 LVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA--ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVF 171 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (193)
|+|++++++++.+..|+..+.. ...+.|+++++||+|+... ...++....... ..++++
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~--~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~~~ 141 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEA--ECGDIPMVLVQTKIDLLDQAVITNEEAEALAKR-----------------LQLPLF 141 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHH--hCCCCCEEEEEEChhcccccCCCHHHHHHHHHH-----------------cCCeEE
Confidence 9999999999999888877643 2358999999999999642 233332221111 114689
Q ss_pred EeeeecCCChhhHHHhhhhhc
Q 029437 172 MCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 172 ~~Sa~~g~gv~el~~~i~~~~ 192 (193)
++||++|.|++++|++|...+
T Consensus 142 ~~Sa~~~~~v~~l~~~l~~~~ 162 (162)
T cd04106 142 RTSVKDDFNVTELFEYLAEKC 162 (162)
T ss_pred EEECCCCCCHHHHHHHHHHhC
Confidence 999999999999999998653
No 71
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.96 E-value=7e-29 Score=172.44 Aligned_cols=154 Identities=16% Similarity=0.162 Sum_probs=116.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCccee-EE--EeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEE
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTSE-EL--SIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVD 96 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~-~~--~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d 96 (193)
+||+++|++|+|||||++++.+..+.. ..||.+.... .+ ......+.+|||+|++++..+...+++.+|++++|+|
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 81 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEE
Confidence 689999999999999999999988764 3344443222 12 2234678999999999999888888899999999999
Q ss_pred CCChhhHHHHHHHHHHHHcCC--CCCCCcEEEEEeCCCCCCC--CCHHHHHHhhCCCccccCCCccccCCCCCcceEEEE
Q 029437 97 AYDKERFAESKKELDALLSDE--ALANVPFLVLGNKIDIPYA--ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFM 172 (193)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~--~~~~~pviiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (193)
++++++++.+..|+..+.... ..++.|+++|+||+|+... ...++... +... ..+.+++
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~-~~~~----------------~~~~~~e 144 (165)
T cd04140 82 VTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAA-CATE----------------WNCAFME 144 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHH-HHHH----------------hCCcEEE
Confidence 999999999888876653322 2368999999999999642 22222111 1100 1246899
Q ss_pred eeeecCCChhhHHHhhhhh
Q 029437 173 CSIVRKMGYGDGFKWLSQY 191 (193)
Q Consensus 173 ~Sa~~g~gv~el~~~i~~~ 191 (193)
|||++|.|++++|++|.+.
T Consensus 145 ~SA~~g~~v~~~f~~l~~~ 163 (165)
T cd04140 145 TSAKTNHNVQELFQELLNL 163 (165)
T ss_pred eecCCCCCHHHHHHHHHhc
Confidence 9999999999999999864
No 72
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.96 E-value=2.3e-28 Score=173.67 Aligned_cols=154 Identities=23% Similarity=0.297 Sum_probs=119.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc--cCCCCCccee--EEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEEEEE
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDERLVQ--HQPTQYPTSE--ELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYL 94 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~~~~--~~~t~~~~~~--~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v 94 (193)
+||+++|++|||||||++++.+..+.. ..+|.+.... .+..+ .+.+.+|||||++++......+++.+|++++|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 489999999999999999999988753 4455554332 23333 46899999999999998888899999999999
Q ss_pred EECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEE
Q 029437 95 VDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFM 172 (193)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (193)
+|++++++++++..|+..+... ...+.|+++++||+|+.. ....++...... . ...++++
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~-~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~-~----------------~~~~~~e 142 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEY-AQEDVVIMLLGNKADMSGERVVKREDGERLAK-E----------------YGVPFME 142 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEEcccchhccccCHHHHHHHHH-H----------------cCCeEEE
Confidence 9999999999998888777543 335789999999999963 223333222211 1 1247899
Q ss_pred eeeecCCChhhHHHhhhhhc
Q 029437 173 CSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 173 ~Sa~~g~gv~el~~~i~~~~ 192 (193)
+||++|.|++++|++|.+.+
T Consensus 143 ~Sa~~~~~v~~l~~~l~~~~ 162 (191)
T cd04112 143 TSAKTGLNVELAFTAVAKEL 162 (191)
T ss_pred EeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999998764
No 73
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.96 E-value=7.3e-29 Score=176.09 Aligned_cols=154 Identities=19% Similarity=0.273 Sum_probs=117.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc-eeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEEEEEEEC
Q 029437 22 KILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPT-SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDA 97 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~ 97 (193)
+|+++|.+|||||||++++..+.|.. ..+|.+.. ...+...+ +.+.+|||||++++..++..+++.+|++++|+|+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI 80 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence 58999999999999999999888765 33454432 22333433 5689999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHcCCC--CCCCcEEEEEeCCCCCCC--CCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEe
Q 029437 98 YDKERFAESKKELDALLSDEA--LANVPFLVLGNKIDIPYA--ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMC 173 (193)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~--~~~~pviiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
+++++++.+..|+..+..... ..+.|+++++||+|+... ....+.. .+... ..+.++++
T Consensus 81 ~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~-~~~~~----------------~~~~~~e~ 143 (190)
T cd04144 81 TSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGA-ALARR----------------LGCEFIEA 143 (190)
T ss_pred CCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHH-HHHHH----------------hCCEEEEe
Confidence 999999999998887754322 357999999999999632 2222211 11111 12468999
Q ss_pred eeecCCChhhHHHhhhhhc
Q 029437 174 SIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 174 Sa~~g~gv~el~~~i~~~~ 192 (193)
||++|.|++++|++|.+++
T Consensus 144 SAk~~~~v~~l~~~l~~~l 162 (190)
T cd04144 144 SAKTNVNVERAFYTLVRAL 162 (190)
T ss_pred cCCCCCCHHHHHHHHHHHH
Confidence 9999999999999998764
No 74
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.96 E-value=4e-29 Score=177.24 Aligned_cols=167 Identities=19% Similarity=0.301 Sum_probs=118.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCccee-EEEe--CCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEEC
Q 029437 22 KILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTSE-ELSI--GKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDA 97 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~ 97 (193)
||+++|++|||||||++++.+..+.. ..||.+.... .+.. ....+.+|||+|++.+..+...++..+|++++|+|+
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv 81 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSV 81 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEEC
Confidence 79999999999999999999998875 3456544322 2223 347899999999999988888889999999999999
Q ss_pred CChhhHHHHHH-HHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeee
Q 029437 98 YDKERFAESKK-ELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIV 176 (193)
Q Consensus 98 ~~~~~~~~~~~-~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 176 (193)
+++++++.+.. |+..+... .++.|+++|+||+|+.......+................ ..+. ..+.+.+++|||+
T Consensus 82 ~~~~sf~~~~~~~~~~i~~~--~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~-~~~~-~~~~~~~~e~SAk 157 (189)
T cd04134 82 DSPDSLENVESKWLGEIREH--CPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGL-AVAK-RINALRYLECSAK 157 (189)
T ss_pred CCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHH-HHHH-HcCCCEEEEccCC
Confidence 99999998874 55555432 358999999999999754332222111111110000000 0000 1123678999999
Q ss_pred cCCChhhHHHhhhhhc
Q 029437 177 RKMGYGDGFKWLSQYI 192 (193)
Q Consensus 177 ~g~gv~el~~~i~~~~ 192 (193)
+|.|++++|++|.+.+
T Consensus 158 ~~~~v~e~f~~l~~~~ 173 (189)
T cd04134 158 LNRGVNEAFTEAARVA 173 (189)
T ss_pred cCCCHHHHHHHHHHHH
Confidence 9999999999998653
No 75
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.96 E-value=1e-28 Score=178.09 Aligned_cols=167 Identities=22% Similarity=0.274 Sum_probs=119.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCccee-EEEe--CCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEE
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTSE-ELSI--GKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVD 96 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d 96 (193)
+||+|+|++|||||||+.++....|.. +.||...... .+.. ..+.+.+|||+|++.+..+.+.+++.+|++++|||
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfd 81 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFD 81 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEE
Confidence 689999999999999999999988875 5577665432 3333 34789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCH-HHHHHhhCCCccccCCCccccCCCCCcceEEEEeee
Q 029437 97 AYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASE-EELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSI 175 (193)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 175 (193)
++++++++.+..+|...+.. ..++.|+++|+||+|+...... .++.+. ...... ......+++. .+.+.+++|||
T Consensus 82 is~~~Sf~~i~~~w~~~~~~-~~~~~piiLVgnK~DL~~~~~~~~~~~~~-~~~pIs-~e~g~~~ak~-~~~~~y~E~SA 157 (222)
T cd04173 82 ISRPETLDSVLKKWQGETQE-FCPNAKVVLVGCKLDMRTDLATLRELSKQ-RLIPVT-HEQGTVLAKQ-VGAVSYVECSS 157 (222)
T ss_pred CCCHHHHHHHHHHHHHHHHh-hCCCCCEEEEEECcccccchhhhhhhhhc-cCCccC-HHHHHHHHHH-cCCCEEEEcCC
Confidence 99999999997666655443 3468999999999999643211 111110 000000 0011111111 12358999999
Q ss_pred ecCCC-hhhHHHhhhhh
Q 029437 176 VRKMG-YGDGFKWLSQY 191 (193)
Q Consensus 176 ~~g~g-v~el~~~i~~~ 191 (193)
+++.| |+++|+....+
T Consensus 158 k~~~~~V~~~F~~~~~~ 174 (222)
T cd04173 158 RSSERSVRDVFHVATVA 174 (222)
T ss_pred CcCCcCHHHHHHHHHHH
Confidence 99885 99999987653
No 76
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.96 E-value=4e-28 Score=167.83 Aligned_cols=154 Identities=19% Similarity=0.278 Sum_probs=119.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCc--ceeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEEEEEE
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYP--TSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAVVYLV 95 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~ 95 (193)
.||+++|++|||||||++++.+..+.. ..++.+. ....+..++ ..+.+||+||+..+..+...+++.+|++++|+
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 489999999999999999999888764 3344433 333444444 57999999999999999899999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC--CCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEe
Q 029437 96 DAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA--ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMC 173 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
|++++++++.+..|+..+..... .+.|+++++||+|+... ...++...... . ..+.++++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilv~nK~D~~~~~~~~~~~~~~~~~-~----------------~~~~~~~~ 142 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERG-NDVIIVLVGNKTDLSDKRQVSTEEGEKKAK-E----------------LNAMFIET 142 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEChhccccCccCHHHHHHHHH-H----------------hCCEEEEE
Confidence 99999999999988888765432 37999999999999522 22222222211 1 12568999
Q ss_pred eeecCCChhhHHHhhhhhc
Q 029437 174 SIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 174 Sa~~g~gv~el~~~i~~~~ 192 (193)
||++|.|+++++++|.+.+
T Consensus 143 Sa~~~~~v~~l~~~i~~~l 161 (161)
T cd01861 143 SAKAGHNVKELFRKIASAL 161 (161)
T ss_pred eCCCCCCHHHHHHHHHHhC
Confidence 9999999999999998754
No 77
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.96 E-value=3.5e-28 Score=168.19 Aligned_cols=154 Identities=21% Similarity=0.296 Sum_probs=119.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEEEEEE
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPT--SEELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLV 95 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~ 95 (193)
+||+++|++|+|||||++++.+.++.. ..++.+.. ...+..+ ...+.+||+||++.+......+++.+|++++|+
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 589999999999999999999888754 33444432 2233333 367899999999999988889999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC--CCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEe
Q 029437 96 DAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA--ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMC 173 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
|+++++++..+..|+..+... ..++.|+++++||.|+... ...++...... . ..+.++++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-~----------------~~~~~~~~ 142 (161)
T cd04113 81 DITNRTSFEALPTWLSDARAL-ASPNIVVILVGNKSDLADQREVTFLEASRFAQ-E----------------NGLLFLET 142 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEEchhcchhccCCHHHHHHHHH-H----------------cCCEEEEE
Confidence 999999999998888876433 3468999999999999632 22333222221 1 12579999
Q ss_pred eeecCCChhhHHHhhhhhc
Q 029437 174 SIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 174 Sa~~g~gv~el~~~i~~~~ 192 (193)
||++|.|++++|+++.+.+
T Consensus 143 Sa~~~~~i~~~~~~~~~~~ 161 (161)
T cd04113 143 SALTGENVEEAFLKCARSI 161 (161)
T ss_pred ECCCCCCHHHHHHHHHHhC
Confidence 9999999999999998764
No 78
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=9.4e-29 Score=166.91 Aligned_cols=155 Identities=22% Similarity=0.279 Sum_probs=128.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccccC-CCCCcc----eeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEE
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQ-PTQYPT----SEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~-~t~~~~----~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~v 91 (193)
+...+|++++|+.|+|||+|+.+++...|.+.. .|.+.. ...++...+++++|||+|++++++....+++.+-++
T Consensus 3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga 82 (216)
T KOG0098|consen 3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA 82 (216)
T ss_pred ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence 446789999999999999999999999998744 455543 344555679999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCC--CCCCHHH---HHHhhCCCccccCCCccccCCCCCc
Q 029437 92 VYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIP--YAASEEE---LRYHLGLSNFTTGKGKVNLADSNVR 166 (193)
Q Consensus 92 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (193)
|+|+|++.+++|..+..|+.++.++. .++..+++++||+|+. +.++.+| ..++.++
T Consensus 83 lLVydit~r~sF~hL~~wL~D~rq~~-~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgL------------------ 143 (216)
T KOG0098|consen 83 LLVYDITRRESFNHLTSWLEDARQHS-NENMVIMLIGNKSDLEARREVSKEEGEAFAREHGL------------------ 143 (216)
T ss_pred EEEEEccchhhHHHHHHHHHHHHHhc-CCCcEEEEEcchhhhhccccccHHHHHHHHHHcCc------------------
Confidence 99999999999999999999996653 5799999999999998 4444444 4444433
Q ss_pred ceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 167 PLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 167 ~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
.++++||++++|++|.|..+.+.+
T Consensus 144 --ifmETSakt~~~VEEaF~nta~~I 167 (216)
T KOG0098|consen 144 --IFMETSAKTAENVEEAFINTAKEI 167 (216)
T ss_pred --eeehhhhhhhhhHHHHHHHHHHHH
Confidence 457999999999999998766543
No 79
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.96 E-value=1.2e-28 Score=171.72 Aligned_cols=157 Identities=18% Similarity=0.256 Sum_probs=121.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc-eeEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEEEEEE
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPT-SEELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLV 95 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~ 95 (193)
++||+++|++|||||||++++.+..+.. ..+|.+.. ...+..+ ...+.+|||||++++..++..+++.++++++|+
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 4789999999999999999999888754 34454432 2233333 368899999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCC--CHHHHHHhhCCCccccCCCccccCCCCCcceEEEEe
Q 029437 96 DAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAA--SEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMC 173 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
|++++++++....|...+.......+.|+++++||.|+.... ..++... +.... +..+++++
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~-~~~~~---------------~~~~~~~~ 144 (168)
T cd04177 81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVS-LSQQW---------------GNVPFYET 144 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHH-HHHHc---------------CCceEEEe
Confidence 999999999998888877654445689999999999996422 2222111 11111 22578999
Q ss_pred eeecCCChhhHHHhhhhhc
Q 029437 174 SIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 174 Sa~~g~gv~el~~~i~~~~ 192 (193)
||++|.|++++|++|.+.+
T Consensus 145 SA~~~~~i~~~f~~i~~~~ 163 (168)
T cd04177 145 SARKRTNVDEVFIDLVRQI 163 (168)
T ss_pred eCCCCCCHHHHHHHHHHHH
Confidence 9999999999999998754
No 80
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.96 E-value=4.1e-28 Score=169.07 Aligned_cols=156 Identities=21% Similarity=0.264 Sum_probs=121.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCcc--eeEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEEEE
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQH-QPTQYPT--SEELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~--~~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~ 93 (193)
..+||+++|++|+|||||++++.+.++... .++.+.. ...+..+ ...+.+||+||++.+..+...+++.+|++++
T Consensus 3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~ 82 (168)
T cd01866 3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL 82 (168)
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 347999999999999999999998887653 3444432 2333333 3689999999999999888889999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceEEE
Q 029437 94 LVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVF 171 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (193)
|+|++++++++.+..|+..+... ..++.|+++++||.|+.. ....++....... ....++
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~ 144 (168)
T cd01866 83 VYDITRRETFNHLTSWLEDARQH-SNSNMTIMLIGNKCDLESRREVSYEEGEAFAKE-----------------HGLIFM 144 (168)
T ss_pred EEECCCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECcccccccCCCHHHHHHHHHH-----------------cCCEEE
Confidence 99999999999999888877543 236899999999999973 2233333222211 124689
Q ss_pred EeeeecCCChhhHHHhhhhhc
Q 029437 172 MCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 172 ~~Sa~~g~gv~el~~~i~~~~ 192 (193)
++||++|.|++++|+++.+.+
T Consensus 145 e~Sa~~~~~i~~~~~~~~~~~ 165 (168)
T cd01866 145 ETSAKTASNVEEAFINTAKEI 165 (168)
T ss_pred EEeCCCCCCHHHHHHHHHHHH
Confidence 999999999999999998764
No 81
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.96 E-value=4.1e-28 Score=167.78 Aligned_cols=155 Identities=23% Similarity=0.306 Sum_probs=122.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEEEEEE
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLV 95 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~ 95 (193)
+||+++|++|||||||++++.+..+.. ..++.+... ..+.+. ...+.+||+||++.+.......++.+|++++|+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 589999999999999999999888754 445555432 223333 368999999999999888888899999999999
Q ss_pred ECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCC-CCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEee
Q 029437 96 DAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIP-YAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCS 174 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 174 (193)
|++++++++.+..|+..+.......+.|+++++||+|+. .....++....... ..+.++++|
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~-----------------~~~~~~~~S 143 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFARK-----------------HNMLFIETS 143 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHHH-----------------cCCEEEEEe
Confidence 999999999988887777665556789999999999997 33333333222211 125689999
Q ss_pred eecCCChhhHHHhhhhhc
Q 029437 175 IVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 175 a~~g~gv~el~~~i~~~~ 192 (193)
|++|.|++++++++.+++
T Consensus 144 a~~~~gi~~~~~~~~~~~ 161 (161)
T cd01863 144 AKTRDGVQQAFEELVEKI 161 (161)
T ss_pred cCCCCCHHHHHHHHHHhC
Confidence 999999999999998764
No 82
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.96 E-value=5.6e-28 Score=177.27 Aligned_cols=155 Identities=18% Similarity=0.271 Sum_probs=122.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCC-cceeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEEEEEEE
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQY-PTSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVD 96 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~-~~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d 96 (193)
+||+++|++|+|||||++++....|.. ..||.. .....+..++ +.+.+|||+|++.+..+...++..+|++++|||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfd 80 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFS 80 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEe
Confidence 489999999999999999999888874 445654 2333344444 778999999999998888888899999999999
Q ss_pred CCChhhHHHHHHHHHHHHcCC--------CCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCc
Q 029437 97 AYDKERFAESKKELDALLSDE--------ALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVR 166 (193)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (193)
++++++|+++..|+..+.... ...++|+++++||+|+.. ....+++.+..... .
T Consensus 81 v~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~----------------~ 144 (247)
T cd04143 81 LDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGD----------------E 144 (247)
T ss_pred CCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhc----------------C
Confidence 999999999998888876431 235799999999999963 44555555444321 1
Q ss_pred ceEEEEeeeecCCChhhHHHhhhhh
Q 029437 167 PLEVFMCSIVRKMGYGDGFKWLSQY 191 (193)
Q Consensus 167 ~~~~~~~Sa~~g~gv~el~~~i~~~ 191 (193)
.+.++++||++|.|++++|++|...
T Consensus 145 ~~~~~evSAktg~gI~elf~~L~~~ 169 (247)
T cd04143 145 NCAYFEVSAKKNSNLDEMFRALFSL 169 (247)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999864
No 83
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.96 E-value=1.3e-28 Score=170.38 Aligned_cols=152 Identities=20% Similarity=0.236 Sum_probs=115.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccccC-CCCCccee--EEE--eCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEE
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDERLVQHQ-PTQYPTSE--ELS--IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLV 95 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~-~t~~~~~~--~~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~ 95 (193)
+||+++|++|||||||++++...++.+.. ++...... ... .....+.+|||+|++.+..++..+++.+|++++|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999988876532 34333221 222 23467899999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeee
Q 029437 96 DAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSI 175 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 175 (193)
|++++.+++.+..|+..+... .++.|+++++||+|+.... ..+.. .+.. . ..++++++||
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~--~~~~p~ivv~nK~Dl~~~~-~~~~~-~~~~-~---------------~~~~~~~~Sa 140 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREY--RPEIPCIVVANKIDLDPSV-TQKKF-NFAE-K---------------HNLPLYYVSA 140 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEECccCchhH-HHHHH-HHHH-H---------------cCCeEEEEeC
Confidence 999999998888888777432 3579999999999985321 11111 1100 0 1247899999
Q ss_pred ecCCChhhHHHhhhhhc
Q 029437 176 VRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 176 ~~g~gv~el~~~i~~~~ 192 (193)
++|.|++++|+.+.+.+
T Consensus 141 ~~~~gv~~l~~~l~~~~ 157 (161)
T cd04124 141 ADGTNVVKLFQDAIKLA 157 (161)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999998653
No 84
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.96 E-value=6.5e-28 Score=168.33 Aligned_cols=158 Identities=23% Similarity=0.295 Sum_probs=120.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEEeCC--EEEEEEEcCChhhhH-hhHHhhcccCCEEEE
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPT--SEELSIGK--IKFKAFDLGGHQIAR-RVWKDYYAKVDAVVY 93 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~G~~~~~-~~~~~~~~~~d~vl~ 93 (193)
.++|+++|++|+|||||++++....+.. ..++.+.. ...+..++ ..+.+||++|++.++ .+...+++.+|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 3799999999999999999999888764 34555432 23344444 789999999999886 467788899999999
Q ss_pred EEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC-HHHHHHhhCCCccccCCCccccCCCCCcceEEEE
Q 029437 94 LVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAAS-EEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFM 172 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (193)
|+|++++.+++.+..|...+.......++|+++++||+|+..... ..+....+... ..+.+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~----------------~~~~~~e 145 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADA----------------HSMPLFE 145 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHH----------------cCCcEEE
Confidence 999999999999999888876655556899999999999863221 11222222111 1256899
Q ss_pred eeeec---CCChhhHHHhhhhhcC
Q 029437 173 CSIVR---KMGYGDGFKWLSQYIK 193 (193)
Q Consensus 173 ~Sa~~---g~gv~el~~~i~~~~~ 193 (193)
|||++ +.|++++|..+.+.++
T Consensus 146 ~Sa~~~~~~~~i~~~f~~l~~~~~ 169 (170)
T cd04115 146 TSAKDPSENDHVEAIFMTLAHKLK 169 (170)
T ss_pred EeccCCcCCCCHHHHHHHHHHHhh
Confidence 99999 8999999999988764
No 85
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.96 E-value=6.6e-29 Score=163.74 Aligned_cols=160 Identities=21% Similarity=0.280 Sum_probs=127.5
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCC-CCc--c--eeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCE
Q 029437 16 LWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPT-QYP--T--SEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDA 90 (193)
Q Consensus 16 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t-~~~--~--~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 90 (193)
.....+||+++|.+|+|||||+.++....|.+..|+ ++. . ...++....++.+|||+|+++++.+.+.+++.+-+
T Consensus 7 ~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqG 86 (209)
T KOG0080|consen 7 GYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQG 86 (209)
T ss_pred CcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCce
Confidence 355679999999999999999999999998886664 543 3 34445566899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCC--CCCCHHHHHHhhCCCccccCCCccccCCCCCcce
Q 029437 91 VVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIP--YAASEEELRYHLGLSNFTTGKGKVNLADSNVRPL 168 (193)
Q Consensus 91 vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (193)
+|+|+|++.+++|..+..|+.++-.-...+++-.++|+||+|.. +.++.+| ++.+++ ...+
T Consensus 87 iIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reE-----G~kfAr------------~h~~ 149 (209)
T KOG0080|consen 87 IILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREE-----GLKFAR------------KHRC 149 (209)
T ss_pred eEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHH-----HHHHHH------------hhCc
Confidence 99999999999999998888888543344577778999999986 4445544 222210 0124
Q ss_pred EEEEeeeecCCChhhHHHhhhhhc
Q 029437 169 EVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 169 ~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
-+++|||++.+|++..|+.+..+|
T Consensus 150 LFiE~SAkt~~~V~~~FeelveKI 173 (209)
T KOG0080|consen 150 LFIECSAKTRENVQCCFEELVEKI 173 (209)
T ss_pred EEEEcchhhhccHHHHHHHHHHHH
Confidence 578999999999999999887654
No 86
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.96 E-value=4.5e-28 Score=168.09 Aligned_cols=153 Identities=18% Similarity=0.337 Sum_probs=116.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC--Cccc-cCCCCCccee--EEE---eCCEEEEEEEcCChhhhHhhHHhhcccCCEEE
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDE--RLVQ-HQPTQYPTSE--ELS---IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVV 92 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~--~~~~-~~~t~~~~~~--~~~---~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl 92 (193)
+||+++|++|||||||++++... .+.. ..+|.+.... .+. .....+.+|||||++.+..+...++..+|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 48999999999999999999864 4443 3455554332 222 23488999999999999998899999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCC--CHHHHHHhhCCCccccCCCccccCCCCCcceEE
Q 029437 93 YLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAA--SEEELRYHLGLSNFTTGKGKVNLADSNVRPLEV 170 (193)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (193)
+|+|+++++++..+..|+..+.... .+.|+++++||+|+.... ...+. ..+... ..+.+
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~-~~~~~~----------------~~~~~ 141 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS--KHMPGVLVGNKMDLADKAEVTDAQA-QAFAQA----------------NQLKF 141 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCCHHHH-HHHHHH----------------cCCeE
Confidence 9999999999998888887765432 579999999999996432 22111 111111 12468
Q ss_pred EEeeeecCCChhhHHHhhhhhc
Q 029437 171 FMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 171 ~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
++|||++|.|++++|++|.+.+
T Consensus 142 ~~~Sa~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 142 FKTSALRGVGYEEPFESLARAF 163 (164)
T ss_pred EEEeCCCCCChHHHHHHHHHHh
Confidence 9999999999999999998865
No 87
>PLN03118 Rab family protein; Provisional
Probab=99.96 E-value=4.9e-28 Score=174.54 Aligned_cols=159 Identities=21% Similarity=0.290 Sum_probs=123.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcce--eEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEEE
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTS--EELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAVV 92 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl 92 (193)
.+..+||+|+|++|+|||||++++.+..+....++.+... ..+..+ .+.+.+|||||++.+..++..+++.+|+++
T Consensus 11 ~~~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~v 90 (211)
T PLN03118 11 YDLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGII 90 (211)
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence 4567899999999999999999999988776666665433 334444 367899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHcCC-CCCCCcEEEEEeCCCCCCCC--CHHHHHHhhCCCccccCCCccccCCCCCcceE
Q 029437 93 YLVDAYDKERFAESKKELDALLSDE-ALANVPFLVLGNKIDIPYAA--SEEELRYHLGLSNFTTGKGKVNLADSNVRPLE 169 (193)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~pviiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
+|+|+++++++..+..+|...+... ...+.|+++|+||+|+.... ..++...... . ..+.
T Consensus 91 lv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~-~----------------~~~~ 153 (211)
T PLN03118 91 LVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAK-E----------------HGCL 153 (211)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHH-H----------------cCCE
Confidence 9999999999999988766654432 23578999999999997432 2222211111 0 1246
Q ss_pred EEEeeeecCCChhhHHHhhhhhc
Q 029437 170 VFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
+++|||++|.|++++|++|.+.+
T Consensus 154 ~~e~SAk~~~~v~~l~~~l~~~~ 176 (211)
T PLN03118 154 FLECSAKTRENVEQCFEELALKI 176 (211)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998754
No 88
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.96 E-value=2.4e-28 Score=173.93 Aligned_cols=147 Identities=18% Similarity=0.335 Sum_probs=116.5
Q ss_pred EcCCCCCHHHHHHHHhcCCccc-cCCCCCcceeEE--Ee--CCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCCh
Q 029437 26 LGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTSEEL--SI--GKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDK 100 (193)
Q Consensus 26 ~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~--~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~ 100 (193)
+|++|||||||++++....+.. ..||.+...... .. ..+.+.+|||+|++++..++..+++.+|++++|+|++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 5999999999999999888765 567776544333 22 357899999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC-CCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCC
Q 029437 101 ERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA-ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKM 179 (193)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 179 (193)
.++..+..|+..+... ..++|+++|+||+|+... ...++. .+. . ...+.+++|||++|.
T Consensus 81 ~S~~~i~~w~~~i~~~--~~~~piilvgNK~Dl~~~~v~~~~~--~~~--~--------------~~~~~~~e~SAk~~~ 140 (200)
T smart00176 81 VTYKNVPNWHRDLVRV--CENIPIVLCGNKVDVKDRKVKAKSI--TFH--R--------------KKNLQYYDISAKSNY 140 (200)
T ss_pred HHHHHHHHHHHHHHHh--CCCCCEEEEEECcccccccCCHHHH--HHH--H--------------HcCCEEEEEeCCCCC
Confidence 9999998888877553 258999999999998632 222221 110 0 023678999999999
Q ss_pred ChhhHHHhhhhhc
Q 029437 180 GYGDGFKWLSQYI 192 (193)
Q Consensus 180 gv~el~~~i~~~~ 192 (193)
||+++|++|.+.+
T Consensus 141 ~v~~~F~~l~~~i 153 (200)
T smart00176 141 NFEKPFLWLARKL 153 (200)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998754
No 89
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.96 E-value=2.7e-28 Score=172.94 Aligned_cols=154 Identities=21% Similarity=0.287 Sum_probs=119.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEEEEEE
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLV 95 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~ 95 (193)
+||+++|++|||||||++++.+..+.. ..+|.+... ..+..+ .+.+.+||++|++.+...+...++.+|++++|+
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 589999999999999999999998875 456655432 333433 467899999999999989999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCC--CHHHHHHhhCCCccccCCCccccCCCCCcceEEEEe
Q 029437 96 DAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAA--SEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMC 173 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
|+++++++..+..|+..+... ...+.|+++++||+|+.... ..++.. .+... ..++++++
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~-~~~~~~~ivv~nK~Dl~~~~~v~~~~~~-~~~~~----------------~~~~~~ev 142 (188)
T cd04125 81 DVTDQESFENLKFWINEINRY-ARENVIKVIVANKSDLVNNKVVDSNIAK-SFCDS----------------LNIPFFET 142 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECCCCcccccCCHHHHH-HHHHH----------------cCCeEEEE
Confidence 999999999999988877543 23468999999999987322 222221 11100 12468999
Q ss_pred eeecCCChhhHHHhhhhhc
Q 029437 174 SIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 174 Sa~~g~gv~el~~~i~~~~ 192 (193)
||++|.|++++|++|.+.+
T Consensus 143 Sa~~~~~i~~~f~~l~~~~ 161 (188)
T cd04125 143 SAKQSINVEEAFILLVKLI 161 (188)
T ss_pred eCCCCCCHHHHHHHHHHHH
Confidence 9999999999999998764
No 90
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.96 E-value=4.8e-28 Score=168.37 Aligned_cols=160 Identities=15% Similarity=0.237 Sum_probs=114.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcc-eeE--EEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEEC
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPT-SEE--LSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDA 97 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~-~~~--~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~ 97 (193)
+||+++|++|||||||++++....+....++.... ... +....+.+.+|||||...+...+...+..+|++++|+|+
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSV 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEEC
Confidence 48999999999999999999998886654432221 222 223457899999999988877777778999999999999
Q ss_pred CChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeec
Q 029437 98 YDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVR 177 (193)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 177 (193)
+++.+++.+...|...+.... .+.|+++++||+|+.+........+...... ........+++|||++
T Consensus 81 ~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~e~Sa~~ 148 (166)
T cd01893 81 DRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIM-----------NEFREIETCVECSAKT 148 (166)
T ss_pred CCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHH-----------HHHhcccEEEEecccc
Confidence 999999988765555444332 4899999999999975433211111100000 0000113689999999
Q ss_pred CCChhhHHHhhhhhc
Q 029437 178 KMGYGDGFKWLSQYI 192 (193)
Q Consensus 178 g~gv~el~~~i~~~~ 192 (193)
|.|++++|+.+.+.+
T Consensus 149 ~~~v~~lf~~~~~~~ 163 (166)
T cd01893 149 LINVSEVFYYAQKAV 163 (166)
T ss_pred ccCHHHHHHHHHHHh
Confidence 999999999988754
No 91
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.96 E-value=9.1e-28 Score=167.70 Aligned_cols=155 Identities=22% Similarity=0.378 Sum_probs=118.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCcc--eeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEEEEEE
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDERLVQH-QPTQYPT--SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAVVYLV 95 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~--~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~ 95 (193)
+||+++|++|||||||++++.+..+... .++.+.. ...+..++ ..+.+||+||++.+..+...+++.+|++++|+
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 5899999999999999999998876543 3444432 23344443 66789999999999988889999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHcCCC---CCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceEE
Q 029437 96 DAYDKERFAESKKELDALLSDEA---LANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEV 170 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~---~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (193)
|+++++++++...|...++.... ..++|+++++||+|+.. ....++...... .. ....+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-~~---------------~~~~~ 144 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQ-SN---------------GNIPY 144 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHH-Hc---------------CCceE
Confidence 99999998888877776654432 34899999999999973 223444333222 11 23678
Q ss_pred EEeeeecCCChhhHHHhhhhh
Q 029437 171 FMCSIVRKMGYGDGFKWLSQY 191 (193)
Q Consensus 171 ~~~Sa~~g~gv~el~~~i~~~ 191 (193)
+++||++|.|+++++++|.+.
T Consensus 145 ~~~Sa~~~~gv~~l~~~i~~~ 165 (172)
T cd01862 145 FETSAKEAINVEQAFETIARK 165 (172)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999999865
No 92
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.96 E-value=1.3e-27 Score=165.66 Aligned_cols=155 Identities=19% Similarity=0.289 Sum_probs=120.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCcce-eEEEe--CCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEE
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDERLVQH-QPTQYPTS-EELSI--GKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVD 96 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~~-~~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d 96 (193)
+||+++|++|||||||++++.+..+... .++..... ..... ....+.+||+||+..+......+++.+|++++|+|
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence 5899999999999999999998887643 33333222 22223 34689999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEee
Q 029437 97 AYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCS 174 (193)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 174 (193)
+.++.++.....++..+.......++|+++++||+|+.. .....+...... . ...+++++|
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~-~----------------~~~~~~~~S 143 (164)
T cd04139 81 ITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLAR-Q----------------WGVPYVETS 143 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHH-H----------------hCCeEEEee
Confidence 999999999999999887765556899999999999975 222222221111 1 124689999
Q ss_pred eecCCChhhHHHhhhhhc
Q 029437 175 IVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 175 a~~g~gv~el~~~i~~~~ 192 (193)
|++|.|++++|++|.+.+
T Consensus 144 a~~~~gi~~l~~~l~~~~ 161 (164)
T cd04139 144 AKTRQNVEKAFYDLVREI 161 (164)
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999998764
No 93
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.96 E-value=9.3e-28 Score=170.01 Aligned_cols=154 Identities=16% Similarity=0.209 Sum_probs=115.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEeC---CEEEEEEEcCChhhhHhhHHhhcccCCEEEEEE
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSIG---KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLV 95 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~---~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~ 95 (193)
+||+++|++|+|||||++++.+..+.. ..+|..... ..+... .+.+.+|||||++.+..+...++..+|++++|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 80 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY 80 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence 489999999999999999999988764 334443332 223332 468999999999999998888999999999999
Q ss_pred ECCChhhHHHHHH-HHHHHHcCCCCCCCcEEEEEeCCCCCCCC------CHHHHHHhhCCCccccCCCccccCCCCCcce
Q 029437 96 DAYDKERFAESKK-ELDALLSDEALANVPFLVLGNKIDIPYAA------SEEELRYHLGLSNFTTGKGKVNLADSNVRPL 168 (193)
Q Consensus 96 d~~~~~~~~~~~~-~~~~~~~~~~~~~~pviiv~nK~D~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (193)
|++++++++++.. |+..+. . ..++.|+++++||.|+.... ..++..+... .. +..
T Consensus 81 d~~~~~s~~~~~~~~~~~~~-~-~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~-~~---------------~~~ 142 (187)
T cd04132 81 AVDNPTSLDNVEDKWFPEVN-H-FCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAK-KQ---------------GAF 142 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHH-H-hCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHH-Hc---------------CCc
Confidence 9999999998875 444443 2 23589999999999986422 1222211111 11 223
Q ss_pred EEEEeeeecCCChhhHHHhhhhhc
Q 029437 169 EVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 169 ~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
.+++|||++|.|++++|+.+.+.+
T Consensus 143 ~~~e~Sa~~~~~v~~~f~~l~~~~ 166 (187)
T cd04132 143 AYLECSAKTMENVEEVFDTAIEEA 166 (187)
T ss_pred EEEEccCCCCCCHHHHHHHHHHHH
Confidence 689999999999999999998654
No 94
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.96 E-value=6.2e-28 Score=172.00 Aligned_cols=155 Identities=17% Similarity=0.158 Sum_probs=113.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEEeCC--EEEEEEEcCChhhhH--------hhHHhhccc
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPT--SEELSIGK--IKFKAFDLGGHQIAR--------RVWKDYYAK 87 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~G~~~~~--------~~~~~~~~~ 87 (193)
+||+|+|++|||||||++++.+.+|.. ..||.... ...+.+++ +.+.+|||||...+. ......+..
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 489999999999999999999988865 45555432 23344444 678899999965431 112344689
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHcCC--CCCCCcEEEEEeCCCCCCC--CCHHHHHHhhCCCccccCCCccccCCC
Q 029437 88 VDAVVYLVDAYDKERFAESKKELDALLSDE--ALANVPFLVLGNKIDIPYA--ASEEELRYHLGLSNFTTGKGKVNLADS 163 (193)
Q Consensus 88 ~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~~pviiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (193)
+|++++|+|++++++++.+..|+..+.... ...++|+++++||+|+... ...++...... ..
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~-~~------------- 146 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVR-KS------------- 146 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHH-Hh-------------
Confidence 999999999999999999998888886543 2468999999999999632 22222211110 00
Q ss_pred CCcceEEEEeeeecCCChhhHHHhhhhh
Q 029437 164 NVRPLEVFMCSIVRKMGYGDGFKWLSQY 191 (193)
Q Consensus 164 ~~~~~~~~~~Sa~~g~gv~el~~~i~~~ 191 (193)
..+++++|||++|.|++++|+.+.+.
T Consensus 147 --~~~~~~e~Sak~g~~v~~lf~~i~~~ 172 (198)
T cd04142 147 --WKCGYLECSAKYNWHILLLFKELLIS 172 (198)
T ss_pred --cCCcEEEecCCCCCCHHHHHHHHHHH
Confidence 23678999999999999999998764
No 95
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.96 E-value=2e-27 Score=164.67 Aligned_cols=154 Identities=23% Similarity=0.345 Sum_probs=119.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCc--ceeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEEEEEE
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYP--TSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAVVYLV 95 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~ 95 (193)
+||+++|++|||||||++++.+..+.. ..++.+. ....+...+ ..+.+||+||+..+......+++.+|++++|+
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 589999999999999999999887654 2344443 233444444 68899999999999988899999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC--CCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEe
Q 029437 96 DAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA--ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMC 173 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
|++++.+++.+..|+..+.... .+++|+++++||+|+... ...++...... . ..+.++++
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~-~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~-~----------------~~~~~~e~ 142 (164)
T smart00175 81 DITNRESFENLKNWLKELREYA-DPNVVIMLVGNKSDLEDQRQVSREEAEAFAE-E----------------HGLPFFET 142 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEEchhcccccCCCHHHHHHHHH-H----------------cCCeEEEE
Confidence 9999999999888777765433 258999999999998742 23333322211 1 12468999
Q ss_pred eeecCCChhhHHHhhhhhc
Q 029437 174 SIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 174 Sa~~g~gv~el~~~i~~~~ 192 (193)
||++|.|+++++++|.+.+
T Consensus 143 Sa~~~~~i~~l~~~i~~~~ 161 (164)
T smart00175 143 SAKTNTNVEEAFEELAREI 161 (164)
T ss_pred eCCCCCCHHHHHHHHHHHH
Confidence 9999999999999998764
No 96
>PLN03110 Rab GTPase; Provisional
Probab=99.96 E-value=1.6e-27 Score=172.26 Aligned_cols=157 Identities=20% Similarity=0.276 Sum_probs=122.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEEE
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPT--SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAVV 92 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~vl 92 (193)
+..+||+++|++|+|||||++++.+..+.. ..+|.+.. ...+..++ +.+.+||++|++++..++..+++.+++++
T Consensus 10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~i 89 (216)
T PLN03110 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 89 (216)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEE
Confidence 456899999999999999999999988764 44565543 33444443 68999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC--CCHHHHHHhhCCCccccCCCccccCCCCCcceEE
Q 029437 93 YLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA--ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEV 170 (193)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (193)
+|+|++++++++.+..|+..+... ...+.|+++++||+|+... ...++. ..+... ..+++
T Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~-~~~~~piiiv~nK~Dl~~~~~~~~~~~-~~l~~~----------------~~~~~ 151 (216)
T PLN03110 90 LVYDITKRQTFDNVQRWLRELRDH-ADSNIVIMMAGNKSDLNHLRSVAEEDG-QALAEK----------------EGLSF 151 (216)
T ss_pred EEEECCChHHHHHHHHHHHHHHHh-CCCCCeEEEEEEChhcccccCCCHHHH-HHHHHH----------------cCCEE
Confidence 999999999999998888776543 3358999999999998632 222222 222111 23579
Q ss_pred EEeeeecCCChhhHHHhhhhhc
Q 029437 171 FMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 171 ~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
+++||++|.|++++|++|.+.+
T Consensus 152 ~e~SA~~g~~v~~lf~~l~~~i 173 (216)
T PLN03110 152 LETSALEATNVEKAFQTILLEI 173 (216)
T ss_pred EEEeCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999997754
No 97
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.96 E-value=3e-27 Score=164.82 Aligned_cols=153 Identities=18% Similarity=0.223 Sum_probs=118.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcc--ccCCCCCcce--eEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEE
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDERLV--QHQPTQYPTS--EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAV 91 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~t~~~~~--~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~v 91 (193)
++.+||+++|++|||||||++++.+..+. .+.||.+... ..+..++ ..+.+||++|++.+..+...++..+|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 34589999999999999999999999886 3556765432 3344444 6789999999998888888888999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCC-----CHHHHHHhhCCCccccCCCccccCCCCCc
Q 029437 92 VYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAA-----SEEELRYHLGLSNFTTGKGKVNLADSNVR 166 (193)
Q Consensus 92 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (193)
++|+|++++.+++.+..|+..+.. ..++|+++|+||+|+.... ..+++.+.++..
T Consensus 82 llv~d~~~~~s~~~~~~~~~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~----------------- 141 (169)
T cd01892 82 CLVYDSSDPKSFSYCAEVYKKYFM---LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLP----------------- 141 (169)
T ss_pred EEEEeCCCHHHHHHHHHHHHHhcc---CCCCeEEEEEEcccccccccccccCHHHHHHHcCCC-----------------
Confidence 999999999999888777765522 2479999999999996322 122333333221
Q ss_pred ceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 167 PLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 167 ~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
.++++||++|.|++++|+.|.+.+
T Consensus 142 --~~~~~Sa~~~~~v~~lf~~l~~~~ 165 (169)
T cd01892 142 --PPLHFSSKLGDSSNELFTKLATAA 165 (169)
T ss_pred --CCEEEEeccCccHHHHHHHHHHHh
Confidence 247999999999999999998753
No 98
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.96 E-value=2.2e-27 Score=168.90 Aligned_cols=153 Identities=18% Similarity=0.231 Sum_probs=117.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc--cCCCCCcce--eEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEEEEE
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDERLVQ--HQPTQYPTS--EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAVVYL 94 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~~~~--~~~t~~~~~--~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v 94 (193)
+||+++|++|+|||||++++.++.+.. +.+|.+... ..+..++ +.+.+||++|++++..+...++..+|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 489999999999999999999988764 555665432 2344443 5678999999999988888889999999999
Q ss_pred EECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCC------CHHHHHHhhCCCccccCCCccccCCCCCcce
Q 029437 95 VDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAA------SEEELRYHLGLSNFTTGKGKVNLADSNVRPL 168 (193)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (193)
+|++++++++.+..|+..+... .++.|+++|+||+|+.... ..++...... . ...
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~-~----------------~~~ 141 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNL--EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFAD-E----------------IKA 141 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhc--CCCCCEEEEEEcccccccccccCccCHHHHHHHHH-H----------------cCC
Confidence 9999999999888887776442 2479999999999986321 1111111110 0 124
Q ss_pred EEEEeeeecCCChhhHHHhhhhhc
Q 029437 169 EVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 169 ~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
.++++||++|.|++++|++|.+.+
T Consensus 142 ~~~~~Sa~~~~gv~~l~~~i~~~~ 165 (193)
T cd04118 142 QHFETSSKTGQNVDELFQKVAEDF 165 (193)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHH
Confidence 689999999999999999998653
No 99
>PLN03108 Rab family protein; Provisional
Probab=99.96 E-value=3.4e-27 Score=169.87 Aligned_cols=157 Identities=24% Similarity=0.292 Sum_probs=121.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEEE
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPT--SEELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAVV 92 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl 92 (193)
...+||+|+|++|+|||||++++....+.. ..+|.+.. ...+... .+.+.+|||+|++.+..+...++..+|+++
T Consensus 4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v 83 (210)
T PLN03108 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 345899999999999999999999887765 34555543 2234443 367899999999999988888999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceEE
Q 029437 93 YLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEV 170 (193)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (193)
+|+|++++++++.+..|+..+... ..++.|+++++||+|+.. ....++....... ..+.+
T Consensus 84 lv~D~~~~~s~~~l~~~~~~~~~~-~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~ 145 (210)
T PLN03108 84 LVYDITRRETFNHLASWLEDARQH-ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE-----------------HGLIF 145 (210)
T ss_pred EEEECCcHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECccCccccCCCHHHHHHHHHH-----------------cCCEE
Confidence 999999999999998888776443 235899999999999963 3333333322211 12468
Q ss_pred EEeeeecCCChhhHHHhhhhhc
Q 029437 171 FMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 171 ~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
+++||++|.|++++|+++.+.+
T Consensus 146 ~e~Sa~~~~~v~e~f~~l~~~~ 167 (210)
T PLN03108 146 MEASAKTAQNVEEAFIKTAAKI 167 (210)
T ss_pred EEEeCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998654
No 100
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.3e-28 Score=159.48 Aligned_cols=168 Identities=36% Similarity=0.573 Sum_probs=152.7
Q ss_pred hCCCCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEE
Q 029437 14 LGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 14 ~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~ 93 (193)
+-....+.+|+++|-.|+|||++..++.-.+...+.||++.+.+.+.+++.++++||.+|+-+.+..+.-++.+.|++||
T Consensus 12 L~g~e~e~rililgldGaGkttIlyrlqvgevvttkPtigfnve~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIy 91 (182)
T KOG0072|consen 12 LQGPEREMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGFNVETVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIY 91 (182)
T ss_pred hcCCccceEEEEeeccCCCeeEEEEEcccCcccccCCCCCcCccccccccccceeeEccCcccccHHHHHHhcccceEEE
Confidence 33556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEe
Q 029437 94 LVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMC 173 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
|+|.+|.+........+..++.+....+..++++.||.|........|....++++.. .+ +.+.++.+
T Consensus 92 VVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~L---------k~---r~~~Iv~t 159 (182)
T KOG0072|consen 92 VVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKL---------KD---RIWQIVKT 159 (182)
T ss_pred EEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHH---------hh---heeEEEee
Confidence 9999999988888888888888888888999999999999988888999888887772 22 45889999
Q ss_pred eeecCCChhhHHHhhhhhcC
Q 029437 174 SIVRKMGYGDGFKWLSQYIK 193 (193)
Q Consensus 174 Sa~~g~gv~el~~~i~~~~~ 193 (193)
||.+|+|+++.++|+.+.++
T Consensus 160 SA~kg~Gld~~~DWL~~~l~ 179 (182)
T KOG0072|consen 160 SAVKGEGLDPAMDWLQRPLK 179 (182)
T ss_pred ccccccCCcHHHHHHHHHHh
Confidence 99999999999999988653
No 101
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.96 E-value=5.1e-27 Score=161.34 Aligned_cols=152 Identities=25% Similarity=0.345 Sum_probs=120.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCcceeEE--Ee--CCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEE
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDERLVQH-QPTQYPTSEEL--SI--GKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLV 95 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~~~~~--~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~ 95 (193)
+||+++|++|||||||++++.+..+... .+|.+...... .. ....+.+||+||+..+.......++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 5899999999999999999999887764 45555544433 32 3478899999999999988888999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCC--CCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEe
Q 029437 96 DAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIP--YAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMC 173 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
|++++++++.+..|+..+.... ..+.|+++++||+|+. .....+++.+.... ...+++++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~ 142 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYA-PENIPIILVGNKIDLEDQRQVSTEEAQQFAKE-----------------NGLLFFET 142 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEcccccccccccHHHHHHHHHH-----------------cCCeEEEE
Confidence 9999999999988777776543 3579999999999995 33344444433321 13579999
Q ss_pred eeecCCChhhHHHhhhh
Q 029437 174 SIVRKMGYGDGFKWLSQ 190 (193)
Q Consensus 174 Sa~~g~gv~el~~~i~~ 190 (193)
||++|.|+++++++|.+
T Consensus 143 sa~~~~~i~~~~~~i~~ 159 (159)
T cd00154 143 SAKTGENVEELFQSLAE 159 (159)
T ss_pred ecCCCCCHHHHHHHHhC
Confidence 99999999999999863
No 102
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.96 E-value=2.3e-27 Score=171.92 Aligned_cols=153 Identities=15% Similarity=0.161 Sum_probs=113.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc--ccCCCCC--cceeEEEe--CCEEEEEEEcCChhhhHhhHHhhcc-cCCEEEE
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDERLV--QHQPTQY--PTSEELSI--GKIKFKAFDLGGHQIARRVWKDYYA-KVDAVVY 93 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~t~~--~~~~~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~-~~d~vl~ 93 (193)
+||+++|++|+|||||++++..+.+. ...++.+ .....+.. ....+.+||++|++ ......++. .+|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence 48999999999999999999888774 3444543 33333444 45789999999998 223344556 8999999
Q ss_pred EEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCC--CHHHHHHhhCCCccccCCCccccCCCCCcceEEE
Q 029437 94 LVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAA--SEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVF 171 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (193)
|+|++++.++..+..|+..+.......+.|+++|+||+|+.... ..++. ..+... ..+.++
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~-~~~a~~----------------~~~~~~ 141 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEG-RACAVV----------------FDCKFI 141 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHH-HHHHHH----------------cCCeEE
Confidence 99999999999998888877654444689999999999986432 22221 111100 124689
Q ss_pred EeeeecCCChhhHHHhhhhhc
Q 029437 172 MCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 172 ~~Sa~~g~gv~el~~~i~~~~ 192 (193)
+|||++|.|++++|++|.+.+
T Consensus 142 e~SA~~~~gv~~l~~~l~~~~ 162 (221)
T cd04148 142 ETSAGLQHNVDELLEGIVRQI 162 (221)
T ss_pred EecCCCCCCHHHHHHHHHHHH
Confidence 999999999999999998765
No 103
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.96 E-value=3.6e-27 Score=168.42 Aligned_cols=155 Identities=20% Similarity=0.227 Sum_probs=120.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCC-cceeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEEEEEEEC
Q 029437 22 KILFLGLDNAGKTTLLHMLKDERLVQH-QPTQY-PTSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDA 97 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~~~~~~~-~~t~~-~~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~ 97 (193)
||+++|++|+|||||++++.+..+... .+|.. .....+.+.+ +.+++||+||+..+..++..++..+|++++|+|+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~ 80 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence 589999999999999999999887653 23432 2333444444 6889999999999988888889999999999999
Q ss_pred CChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCC---CHHHHHHhhCCCccccCCCccccCCCCCcceEEEEee
Q 029437 98 YDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAA---SEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCS 174 (193)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 174 (193)
+++.+++.+..|+..+.......++|+++++||+|+.... ...+..+..... ....++++|
T Consensus 81 ~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~----------------~~~~~~~~S 144 (198)
T cd04147 81 DDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELD----------------WNCGFVETS 144 (198)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhh----------------cCCcEEEec
Confidence 9999999999888888766555689999999999996421 122222111100 124688999
Q ss_pred eecCCChhhHHHhhhhhc
Q 029437 175 IVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 175 a~~g~gv~el~~~i~~~~ 192 (193)
|++|.|++++|++|.+.+
T Consensus 145 a~~g~gv~~l~~~l~~~~ 162 (198)
T cd04147 145 AKDNENVLEVFKELLRQA 162 (198)
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 999999999999998764
No 104
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.96 E-value=1.2e-27 Score=167.54 Aligned_cols=169 Identities=20% Similarity=0.265 Sum_probs=117.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc-eeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEEEEEEE
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPT-SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVD 96 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d 96 (193)
+||+++|++|+|||||++++..+.+.. ..++.... ...+..++ ..+.+|||||+..+.......++.+|++++|+|
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~ 80 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS 80 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence 589999999999999999999988764 33444322 22344443 568899999999998888888999999999999
Q ss_pred CCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeee
Q 029437 97 AYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIV 176 (193)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 176 (193)
++++.+++.+...|...+... .++.|+++++||+|+.+.....+............. ....+++. .+...+++|||+
T Consensus 81 ~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~-~~~~~~~e~Sa~ 157 (174)
T cd04135 81 VVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVE-QGQKLAKE-IGAHCYVECSAL 157 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHH-HHHHHHHH-cCCCEEEEecCC
Confidence 999999998876555554433 578999999999998643221111111111111000 00000000 123468999999
Q ss_pred cCCChhhHHHhhhhhc
Q 029437 177 RKMGYGDGFKWLSQYI 192 (193)
Q Consensus 177 ~g~gv~el~~~i~~~~ 192 (193)
+|.|++++|+.+.+++
T Consensus 158 ~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 158 TQKGLKTVFDEAILAI 173 (174)
T ss_pred cCCCHHHHHHHHHHHh
Confidence 9999999999998764
No 105
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.96 E-value=5e-27 Score=162.24 Aligned_cols=154 Identities=22% Similarity=0.326 Sum_probs=117.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCc--ceeEEEe--CCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEE
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDERLVQH-QPTQYP--TSEELSI--GKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLV 95 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~t~~~--~~~~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~ 95 (193)
+||+++|++|+|||||++++.+..+... .++... ....+.. ....+.+||+||+..+......+++.+|++++|+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 5899999999999999999999887643 233322 2223333 3357999999999999888888899999999999
Q ss_pred ECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC--CCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEe
Q 029437 96 DAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA--ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMC 173 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
|++++++++....|+..+..... .++|+++++||+|+... ...++....... ....++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~ 142 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRG-NNISLVIVGNKIDLERQRVVSKSEAEEYAKS-----------------VGAKHFET 142 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcccccccCCCHHHHHHHHHH-----------------cCCEEEEE
Confidence 99999999888888777754332 38999999999999732 223333222211 12457899
Q ss_pred eeecCCChhhHHHhhhhhc
Q 029437 174 SIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 174 Sa~~g~gv~el~~~i~~~~ 192 (193)
||++|.|+++++++|.+.+
T Consensus 143 s~~~~~gi~~~~~~l~~~~ 161 (162)
T cd04123 143 SAKTGKGIEELFLSLAKRM 161 (162)
T ss_pred eCCCCCCHHHHHHHHHHHh
Confidence 9999999999999998764
No 106
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.3e-27 Score=155.39 Aligned_cols=154 Identities=22% Similarity=0.339 Sum_probs=124.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEE--eCCEEEEEEEcCChhhhHhhHHhhcccCCEEE
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPT--SEELS--IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVV 92 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl 92 (193)
...+|++++|++.+|||||+.++.+..|.+ ...|.+.. ..++. ...+++++|||+|+++++.+...++++++++|
T Consensus 19 DymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfi 98 (193)
T KOG0093|consen 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFI 98 (193)
T ss_pred cceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEE
Confidence 456799999999999999999999999876 34455543 22221 13489999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC--CCHH---HHHHhhCCCccccCCCccccCCCCCcc
Q 029437 93 YLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA--ASEE---ELRYHLGLSNFTTGKGKVNLADSNVRP 167 (193)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (193)
+++|+++.++|..+..|.-.+ ....-.+.|+|+++||+|+..+ .+.+ .+.++++..
T Consensus 99 LmyDitNeeSf~svqdw~tqI-ktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfe------------------ 159 (193)
T KOG0093|consen 99 LMYDITNEESFNSVQDWITQI-KTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFE------------------ 159 (193)
T ss_pred EEEecCCHHHHHHHHHHHHHh-eeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChH------------------
Confidence 999999999999998887776 3344469999999999999732 2222 256666654
Q ss_pred eEEEEeeeecCCChhhHHHhhhhhc
Q 029437 168 LEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 168 ~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
+|++||+.+.|++++|+.+...|
T Consensus 160 --fFEtSaK~NinVk~~Fe~lv~~I 182 (193)
T KOG0093|consen 160 --FFETSAKENINVKQVFERLVDII 182 (193)
T ss_pred --HhhhcccccccHHHHHHHHHHHH
Confidence 48999999999999999987764
No 107
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.95 E-value=1.6e-27 Score=154.07 Aligned_cols=175 Identities=35% Similarity=0.578 Sum_probs=154.9
Q ss_pred HHHHHHHhhCC-CCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCC-EEEEEEEcCChhhhHhhHHh
Q 029437 6 WFYGVLASLGL-WQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGK-IKFKAFDLGGHQIARRVWKD 83 (193)
Q Consensus 6 ~~~~~~~~~~~-~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~D~~G~~~~~~~~~~ 83 (193)
||...+...+. ..+++||++.|-.++||||+++++.+.+.+...||.+.+...+.+.+ ..+++||.+|+...+..+..
T Consensus 2 gl~til~~~ks~t~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsN 81 (185)
T KOG0074|consen 2 GLETILCCCKSRTRREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSN 81 (185)
T ss_pred cHHHHHHHhcCCCcceEEEEEEecCCCcchhHHHHHccCChhhccccCCcceEEEeecCcEEEEEEecCCccccchhhhh
Confidence 34444444443 57899999999999999999999999998889999999999999876 89999999999999999999
Q ss_pred hcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCC
Q 029437 84 YYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADS 163 (193)
Q Consensus 84 ~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (193)
++.+.|.+|||+|++|+..|+++-+.+.++++......+|+.+..||.|+..+...+++...+++..+
T Consensus 82 Yyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~l------------ 149 (185)
T KOG0074|consen 82 YYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGL------------ 149 (185)
T ss_pred hhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhh------------
Confidence 99999999999999999999999999999998888899999999999999988888888888876662
Q ss_pred CCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 164 NVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 164 ~~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
..+.+.+.+|||.+++|+..-.+|+.+..
T Consensus 150 rdRswhIq~csals~eg~~dg~~wv~sn~ 178 (185)
T KOG0074|consen 150 RDRSWHIQECSALSLEGSTDGSDWVQSNP 178 (185)
T ss_pred hhceEEeeeCccccccCccCcchhhhcCC
Confidence 22567899999999999999999988654
No 108
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.95 E-value=1.5e-27 Score=165.75 Aligned_cols=154 Identities=21% Similarity=0.267 Sum_probs=111.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCC-cceeEEEe--CCEEEEEEEcCChhhh-HhhHHhhcccCCEEEEEEE
Q 029437 22 KILFLGLDNAGKTTLLHMLKDERLVQH-QPTQY-PTSEELSI--GKIKFKAFDLGGHQIA-RRVWKDYYAKVDAVVYLVD 96 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~~~~~~~-~~t~~-~~~~~~~~--~~~~~~~~D~~G~~~~-~~~~~~~~~~~d~vl~v~d 96 (193)
+|+++|++|+|||||++++....+... .++.. .....+.. ..+.+.+||+||+... ......+++.+|++++|+|
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d 80 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS 80 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence 589999999999999999998777543 34432 22223333 3467899999999853 3455667889999999999
Q ss_pred CCChhhHHHHHHHHHHHHcCCC-CCCCcEEEEEeCCCCCCC--CCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEe
Q 029437 97 AYDKERFAESKKELDALLSDEA-LANVPFLVLGNKIDIPYA--ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMC 173 (193)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~-~~~~pviiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
++++++++.+..|+..+..... ..+.|+++++||+|+... ...++...... .. ...+++|
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-~~----------------~~~~~e~ 143 (165)
T cd04146 81 ITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLAS-EL----------------GCLFFEV 143 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHH-Hc----------------CCEEEEe
Confidence 9999999999888776654332 458999999999998632 23222211111 11 1468999
Q ss_pred eeecCC-ChhhHHHhhhhhc
Q 029437 174 SIVRKM-GYGDGFKWLSQYI 192 (193)
Q Consensus 174 Sa~~g~-gv~el~~~i~~~~ 192 (193)
||++|. |++++|+.|.+.+
T Consensus 144 Sa~~~~~~v~~~f~~l~~~~ 163 (165)
T cd04146 144 SAAEDYDGVHSVFHELCREV 163 (165)
T ss_pred CCCCCchhHHHHHHHHHHHH
Confidence 999995 9999999998765
No 109
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.95 E-value=5.8e-27 Score=163.25 Aligned_cols=159 Identities=19% Similarity=0.212 Sum_probs=119.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCc--ceeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEE
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYP--TSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~v 91 (193)
.....+|+++|++|||||||++++....+.. ..++.+. ....+.+.+ ..+.+||+||+..+......++..+|++
T Consensus 4 ~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 83 (169)
T cd04114 4 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANAL 83 (169)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence 3456899999999999999999998776654 3344432 233344544 6789999999999998888899999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC-HHHHHHhhCCCccccCCCccccCCCCCcceEE
Q 029437 92 VYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAAS-EEELRYHLGLSNFTTGKGKVNLADSNVRPLEV 170 (193)
Q Consensus 92 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (193)
++|+|++++.+++.+..|+..+.. ....+.|+++++||+|+..... ..+..+.+... ....+
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~l~~-~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~----------------~~~~~ 146 (169)
T cd04114 84 ILTYDITCEESFRCLPEWLREIEQ-YANNKVITILVGNKIDLAERREVSQQRAEEFSDA----------------QDMYY 146 (169)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHH-hCCCCCeEEEEEECcccccccccCHHHHHHHHHH----------------cCCeE
Confidence 999999999999888877765532 2335799999999999864322 12222222211 12568
Q ss_pred EEeeeecCCChhhHHHhhhhhc
Q 029437 171 FMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 171 ~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
++|||++|.|++++|++|.+.+
T Consensus 147 ~~~Sa~~~~gv~~l~~~i~~~~ 168 (169)
T cd04114 147 LETSAKESDNVEKLFLDLACRL 168 (169)
T ss_pred EEeeCCCCCCHHHHHHHHHHHh
Confidence 9999999999999999998753
No 110
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.95 E-value=2.7e-27 Score=163.84 Aligned_cols=153 Identities=26% Similarity=0.364 Sum_probs=121.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEE
Q 029437 22 KILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVD 96 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d 96 (193)
||+++|++|+|||||++++.+..+.. ..+|.+... ..+..+ .+.+.+||++|++.+..+....+..+|++++|+|
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999988776 345654433 333443 4679999999999999888889999999999999
Q ss_pred CCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEee
Q 029437 97 AYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCS 174 (193)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 174 (193)
.+++++++.+..|+..+..... .+.|+++++||.|+.. ..+.++...... .. + ..+++||
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~-~~~~iivvg~K~D~~~~~~v~~~~~~~~~~-~~---------------~-~~~~e~S 142 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKP-EDIPIIVVGNKSDLSDEREVSVEEAQEFAK-EL---------------G-VPYFEVS 142 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHST-TTSEEEEEEETTTGGGGSSSCHHHHHHHHH-HT---------------T-SEEEEEB
T ss_pred cccccccccccccccccccccc-ccccceeeeccccccccccchhhHHHHHHH-Hh---------------C-CEEEEEE
Confidence 9999999999988888754433 5799999999999974 444443222211 11 2 5789999
Q ss_pred eecCCChhhHHHhhhhhc
Q 029437 175 IVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 175 a~~g~gv~el~~~i~~~~ 192 (193)
|+++.|+.++|..+.+.+
T Consensus 143 a~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 143 AKNGENVKEIFQELIRKI 160 (162)
T ss_dssp TTTTTTHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999998865
No 111
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.95 E-value=1.3e-27 Score=167.40 Aligned_cols=164 Identities=18% Similarity=0.271 Sum_probs=113.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCcce-eEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECC
Q 029437 23 ILFLGLDNAGKTTLLHMLKDERLVQH-QPTQYPTS-EELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAY 98 (193)
Q Consensus 23 i~v~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~~-~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~ 98 (193)
|+|+|++|+|||||++++.+..+... .++..... ..+..+ .+.+.+|||||++.+..+....++.+|++++|+|++
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~ 80 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD 80 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence 58999999999999999999887653 34433222 233333 357899999999999888888899999999999999
Q ss_pred ChhhHHHHHH-HHHHHHcCCCCCCCcEEEEEeCCCCCCCCC-HHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeee
Q 029437 99 DKERFAESKK-ELDALLSDEALANVPFLVLGNKIDIPYAAS-EEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIV 176 (193)
Q Consensus 99 ~~~~~~~~~~-~~~~~~~~~~~~~~pviiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 176 (193)
++++++.+.. |+..+.. . .++.|+++++||+|+..... .+++...-. ...... ....+++. .+...+++|||+
T Consensus 81 ~~~s~~~~~~~~~~~i~~-~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-~~v~~~-~~~~~~~~-~~~~~~~e~Sa~ 155 (174)
T smart00174 81 SPASFENVKEKWYPEVKH-F-CPNTPIILVGTKLDLREDKSTLRELSKQKQ-EPVTYE-QGEALAKR-IGAVKYLECSAL 155 (174)
T ss_pred CHHHHHHHHHHHHHHHHh-h-CCCCCEEEEecChhhhhChhhhhhhhcccC-CCccHH-HHHHHHHH-cCCcEEEEecCC
Confidence 9999998875 5554433 2 35899999999999974221 111111000 000000 00001111 122478999999
Q ss_pred cCCChhhHHHhhhhh
Q 029437 177 RKMGYGDGFKWLSQY 191 (193)
Q Consensus 177 ~g~gv~el~~~i~~~ 191 (193)
+|.|++++|+.|.+.
T Consensus 156 ~~~~v~~lf~~l~~~ 170 (174)
T smart00174 156 TQEGVREVFEEAIRA 170 (174)
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999999998865
No 112
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.95 E-value=2.9e-27 Score=168.05 Aligned_cols=166 Identities=18% Similarity=0.233 Sum_probs=107.4
Q ss_pred ccEEEEEcCCCCCHHHHHH-HHhcCCcc------ccCCCCCc-c--ee----------EEEeCCEEEEEEEcCChhhhHh
Q 029437 20 EAKILFLGLDNAGKTTLLH-MLKDERLV------QHQPTQYP-T--SE----------ELSIGKIKFKAFDLGGHQIARR 79 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~-~l~~~~~~------~~~~t~~~-~--~~----------~~~~~~~~~~~~D~~G~~~~~~ 79 (193)
.+||+++|++|+|||||+. ++.+..+. ...||.+. . .. .+....+.+.+|||+|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 4799999999999999995 56554432 23466642 1 11 2233458899999999875 3
Q ss_pred hHHhhcccCCEEEEEEECCChhhHHHHHH-HHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHH------HHhhCCCccc
Q 029437 80 VWKDYYAKVDAVVYLVDAYDKERFAESKK-ELDALLSDEALANVPFLVLGNKIDIPYAASEEEL------RYHLGLSNFT 152 (193)
Q Consensus 80 ~~~~~~~~~d~vl~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~------~~~~~~~~~~ 152 (193)
+...+++++|++++|+|++++.+++++.. |+..+... .++.|+++|+||+|+......+.. ..........
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V 157 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHF--CPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADIL 157 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHh--CCCCCEEEEEEchhccccccchhhhcccccccccccCCcc
Confidence 44567899999999999999999999975 55555322 257899999999998632100000 0000000000
Q ss_pred cCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhh
Q 029437 153 TGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQY 191 (193)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~ 191 (193)
.......+++. ..+.+++|||++|.||+++|+.+.++
T Consensus 158 ~~~e~~~~a~~--~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 158 PPETGRAVAKE--LGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred CHHHHHHHHHH--hCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 00000011111 23579999999999999999999865
No 113
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.95 E-value=1.8e-27 Score=166.09 Aligned_cols=154 Identities=19% Similarity=0.263 Sum_probs=113.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-e--EEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEE
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS-E--ELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVD 96 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~--~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d 96 (193)
+||+++|++|||||||++++.+..+.. ..++..... . ........+.+||+||+..+.......++.+|++++|+|
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS 80 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence 589999999999999999999988743 334332211 2 222335689999999999887777778889999999999
Q ss_pred CCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHH------------HHHhhCCCccccCCCccccCCCC
Q 029437 97 AYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEE------------LRYHLGLSNFTTGKGKVNLADSN 164 (193)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~ 164 (193)
++++.++......|...+.... .+.|+++++||+|+........ ....+....
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-------------- 145 (171)
T cd00157 81 VDSPSSFENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEI-------------- 145 (171)
T ss_pred CCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHh--------------
Confidence 9999998887766555544332 4899999999999975433211 111111011
Q ss_pred CcceEEEEeeeecCCChhhHHHhhhh
Q 029437 165 VRPLEVFMCSIVRKMGYGDGFKWLSQ 190 (193)
Q Consensus 165 ~~~~~~~~~Sa~~g~gv~el~~~i~~ 190 (193)
+...++++||++|.|+++++++|.+
T Consensus 146 -~~~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 146 -GAIGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred -CCeEEEEeecCCCCCHHHHHHHHhh
Confidence 2347999999999999999999875
No 114
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.95 E-value=1e-26 Score=160.40 Aligned_cols=154 Identities=20% Similarity=0.292 Sum_probs=119.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCC-cceeEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEEC
Q 029437 22 KILFLGLDNAGKTTLLHMLKDERLVQH-QPTQY-PTSEELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDA 97 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~~~~~~~-~~t~~-~~~~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~ 97 (193)
||+++|++|||||||++++....+... .++.. ......... ...+.+||+||+..+.......++.+|++++|+|+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 80 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI 80 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence 689999999999999999998776543 33333 223334444 46889999999999988888899999999999999
Q ss_pred CChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC--CCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeee
Q 029437 98 YDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA--ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSI 175 (193)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 175 (193)
++++++.+...++..+.........|+++++||+|+... ...++...... .. ..+++++||
T Consensus 81 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~----------------~~~~~~~S~ 143 (160)
T cd00876 81 TDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAK-EW----------------GCPFIETSA 143 (160)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHH-Hc----------------CCcEEEecc
Confidence 999999999999988877655568999999999999742 22222222211 11 146899999
Q ss_pred ecCCChhhHHHhhhhhc
Q 029437 176 VRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 176 ~~g~gv~el~~~i~~~~ 192 (193)
++|.|+++++++|.+.+
T Consensus 144 ~~~~~i~~l~~~l~~~i 160 (160)
T cd00876 144 KDNINIDEVFKLLVREI 160 (160)
T ss_pred CCCCCHHHHHHHHHhhC
Confidence 99999999999998764
No 115
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.95 E-value=9.7e-28 Score=156.19 Aligned_cols=153 Identities=22% Similarity=0.363 Sum_probs=124.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccccCC-CCC--cceeEEE--eCCEEEEEEEcCChhhhHhhHHhhcccCCEE
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQP-TQY--PTSEELS--IGKIKFKAFDLGGHQIARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~-t~~--~~~~~~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~v 91 (193)
+.+-++.+|+|++|+|||||+.++....|...+. |++ ....+++ ...+++.+||++|+++++.+...++++.+++
T Consensus 5 ~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv 84 (198)
T KOG0079|consen 5 YDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGV 84 (198)
T ss_pred HHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceE
Confidence 4456788999999999999999999998887543 443 3344444 4558999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHH---HHHhhCCCccccCCCccccCCCCCc
Q 029437 92 VYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEE---LRYHLGLSNFTTGKGKVNLADSNVR 166 (193)
Q Consensus 92 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (193)
++|+|+++.+||.+..+|+.++-+ +.+.+|-++|+||.|.+. .+..++ ...+++
T Consensus 85 ~vVYDVTn~ESF~Nv~rWLeei~~--ncdsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mg------------------- 143 (198)
T KOG0079|consen 85 IVVYDVTNGESFNNVKRWLEEIRN--NCDSVPKVLVGNKNDDPERRVVDTEDARAFALQMG------------------- 143 (198)
T ss_pred EEEEECcchhhhHhHHHHHHHHHh--cCccccceecccCCCCccceeeehHHHHHHHHhcC-------------------
Confidence 999999999999999999999943 456899999999999982 223222 333333
Q ss_pred ceEEEEeeeecCCChhhHHHhhhhh
Q 029437 167 PLEVFMCSIVRKMGYGDGFKWLSQY 191 (193)
Q Consensus 167 ~~~~~~~Sa~~g~gv~el~~~i~~~ 191 (193)
+.+|++||++.+|+++-|..|-+.
T Consensus 144 -ie~FETSaKe~~NvE~mF~cit~q 167 (198)
T KOG0079|consen 144 -IELFETSAKENENVEAMFHCITKQ 167 (198)
T ss_pred -chheehhhhhcccchHHHHHHHHH
Confidence 456999999999999999888664
No 116
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.95 E-value=1.8e-26 Score=162.47 Aligned_cols=155 Identities=21% Similarity=0.237 Sum_probs=121.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCc-ceeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEEEEEEE
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYP-TSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVD 96 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~-~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d 96 (193)
.||+++|++|+|||||++++....+.. ..|+... ....+...+ ..+.+||+||+.++......++..++++++|+|
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYS 81 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEE
Confidence 589999999999999999999888754 4444432 233444443 567999999999998888889999999999999
Q ss_pred CCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEee
Q 029437 97 AYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCS 174 (193)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 174 (193)
+++..+++.+..++..+++.....+.|+++++||+|+.. .....+...... . ....++++|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~-~----------------~~~~~~~~S 144 (180)
T cd04137 82 VTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAE-S----------------WGAAFLESS 144 (180)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHH-H----------------cCCeEEEEe
Confidence 999999999999999988765557899999999999863 222222221111 1 124689999
Q ss_pred eecCCChhhHHHhhhhhc
Q 029437 175 IVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 175 a~~g~gv~el~~~i~~~~ 192 (193)
|++|.|+.+++++|.+.+
T Consensus 145 a~~~~gv~~l~~~l~~~~ 162 (180)
T cd04137 145 ARENENVEEAFELLIEEI 162 (180)
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999998764
No 117
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.95 E-value=5.4e-27 Score=164.33 Aligned_cols=168 Identities=17% Similarity=0.310 Sum_probs=116.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEE
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVD 96 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d 96 (193)
.||+++|++|||||||++++....+.. +.||..... ..+..+ ...+.+|||+|++.+.......+.++|++++|+|
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~ 81 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS 81 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEE
Confidence 589999999999999999999988765 445554432 334443 3678999999999988887778899999999999
Q ss_pred CCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHH-HHHHhhCCCccccCCCccccCCCCCcceEEEEeee
Q 029437 97 AYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEE-ELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSI 175 (193)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 175 (193)
++++++++.+...|...+.. ...+.|+++++||+|+....... ++...... .... .....++. ......+++|||
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~-~v~~-~~~~~~~~-~~~~~~~~~~Sa 157 (175)
T cd01870 82 IDSPDSLENIPEKWTPEVKH-FCPNVPIILVGNKKDLRNDEHTRRELAKMKQE-PVKP-EEGRDMAN-KIGAFGYMECSA 157 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHh-hCCCCCEEEEeeChhcccChhhhhhhhhccCC-CccH-HHHHHHHH-HcCCcEEEEecc
Confidence 99999998886544444332 23589999999999986432211 11110000 0000 00000000 012347899999
Q ss_pred ecCCChhhHHHhhhhhc
Q 029437 176 VRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 176 ~~g~gv~el~~~i~~~~ 192 (193)
++|.|++++|++|.++.
T Consensus 158 ~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 158 KTKEGVREVFEMATRAA 174 (175)
T ss_pred ccCcCHHHHHHHHHHHh
Confidence 99999999999998754
No 118
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.7e-27 Score=163.09 Aligned_cols=159 Identities=18% Similarity=0.234 Sum_probs=128.5
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce----eEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCE
Q 029437 16 LWQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS----EELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDA 90 (193)
Q Consensus 16 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~----~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 90 (193)
..++-+||+++|++|+|||-|+.++...+|.. ..+|++... ..++.+.++.++|||+|+++|+.....+++.+.+
T Consensus 10 ~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvG 89 (222)
T KOG0087|consen 10 EYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVG 89 (222)
T ss_pred ccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccce
Confidence 35678999999999999999999999999986 445665432 3344456889999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCC--CCCCHHHHHHhhCCCccccCCCccccCCCCCcce
Q 029437 91 VVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIP--YAASEEELRYHLGLSNFTTGKGKVNLADSNVRPL 168 (193)
Q Consensus 91 vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (193)
.++|+|++...+|+++.+|+.++..+. .+++++++|+||+||. +++..++-..--+. ...
T Consensus 90 AllVYDITr~~Tfenv~rWL~ELRdha-d~nivimLvGNK~DL~~lraV~te~~k~~Ae~-----------------~~l 151 (222)
T KOG0087|consen 90 ALLVYDITRRQTFENVERWLKELRDHA-DSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEK-----------------EGL 151 (222)
T ss_pred eEEEEechhHHHHHHHHHHHHHHHhcC-CCCeEEEEeecchhhhhccccchhhhHhHHHh-----------------cCc
Confidence 999999999999999999999997654 4699999999999997 34443332221111 124
Q ss_pred EEEEeeeecCCChhhHHHhhhhhc
Q 029437 169 EVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 169 ~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
.++++||..+.|+++.|+.+...|
T Consensus 152 ~f~EtSAl~~tNVe~aF~~~l~~I 175 (222)
T KOG0087|consen 152 FFLETSALDATNVEKAFERVLTEI 175 (222)
T ss_pred eEEEecccccccHHHHHHHHHHHH
Confidence 568999999999999998877654
No 119
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.95 E-value=8e-27 Score=163.28 Aligned_cols=165 Identities=15% Similarity=0.214 Sum_probs=112.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCC-cceeEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEE
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDERLVQH-QPTQY-PTSEELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVD 96 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~t~~-~~~~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d 96 (193)
+|++++|++|+|||||++++.+..+... .+|.. .....+..+ ...+.+||+||++.+..++..+++++|++++|+|
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d 80 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS 80 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence 5899999999999999999998887653 33432 122233343 3678999999999998888888899999999999
Q ss_pred CCChhhHHHHHH-HHHHHHcCCCCCCCcEEEEEeCCCCCCCCCH-HHHHHhhCCCccccCCCccccCCCCCcceEEEEee
Q 029437 97 AYDKERFAESKK-ELDALLSDEALANVPFLVLGNKIDIPYAASE-EELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCS 174 (193)
Q Consensus 97 ~~~~~~~~~~~~-~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 174 (193)
++++++++.+.. |+..+.. ..++.|+++++||+|+...... ..+........ .. .....+++ ..+...+++||
T Consensus 81 ~~~~~sf~~~~~~~~~~~~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v-~~-~~~~~~a~-~~~~~~~~e~S 155 (173)
T cd04130 81 VVNPSSFQNISEKWIPEIRK--HNPKAPIILVGTQADLRTDVNVLIQLARYGEKPV-SQ-SRAKALAE-KIGACEYIECS 155 (173)
T ss_pred CCCHHHHHHHHHHHHHHHHh--hCCCCCEEEEeeChhhccChhHHHHHhhcCCCCc-CH-HHHHHHHH-HhCCCeEEEEe
Confidence 999999988864 5544532 2357999999999998632210 00000000000 00 00000000 00224799999
Q ss_pred eecCCChhhHHHhhhh
Q 029437 175 IVRKMGYGDGFKWLSQ 190 (193)
Q Consensus 175 a~~g~gv~el~~~i~~ 190 (193)
|++|.|++++|+.+.-
T Consensus 156 a~~~~~v~~lf~~~~~ 171 (173)
T cd04130 156 ALTQKNLKEVFDTAIL 171 (173)
T ss_pred CCCCCCHHHHHHHHHh
Confidence 9999999999998753
No 120
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.95 E-value=8.2e-27 Score=154.31 Aligned_cols=158 Identities=20% Similarity=0.282 Sum_probs=124.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-----eEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEE
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS-----EELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAV 91 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-----~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~v 91 (193)
...++++++|++-+|||||++.++.++|+. ..||++..- +--....+++++|||+|+++++++...++++.-++
T Consensus 6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgv 85 (213)
T KOG0091|consen 6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGV 85 (213)
T ss_pred EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccce
Confidence 356899999999999999999999999987 457776532 11223458999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHcCCCCCCCcE-EEEEeCCCCC--CCCCHHHHHHhhCCCccccCCCccccCCCCCcce
Q 029437 92 VYLVDAYDKERFAESKKELDALLSDEALANVPF-LVLGNKIDIP--YAASEEELRYHLGLSNFTTGKGKVNLADSNVRPL 168 (193)
Q Consensus 92 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pv-iiv~nK~D~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (193)
++|+|.++.++|+++..|+.+..-....|..++ .+|++|+|+. +.+..+|..+--. ....
T Consensus 86 llvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa-----------------~hgM 148 (213)
T KOG0091|consen 86 LLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAA-----------------SHGM 148 (213)
T ss_pred EEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHH-----------------hcCc
Confidence 999999999999999999998754444455554 6999999998 3444444222111 0235
Q ss_pred EEEEeeeecCCChhhHHHhhhhhc
Q 029437 169 EVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 169 ~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
.++++||++|.||+|.|.-|.+.+
T Consensus 149 ~FVETSak~g~NVeEAF~mlaqeI 172 (213)
T KOG0091|consen 149 AFVETSAKNGCNVEEAFDMLAQEI 172 (213)
T ss_pred eEEEecccCCCcHHHHHHHHHHHH
Confidence 679999999999999998776543
No 121
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=8.4e-28 Score=156.83 Aligned_cols=158 Identities=19% Similarity=0.203 Sum_probs=125.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCc--ceeEE--EeCCEEEEEEEcCChhhhHhhHHhhcccCCEE
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYP--TSEEL--SIGKIKFKAFDLGGHQIARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~--~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~v 91 (193)
++.-+||+++|+.|+|||.|.++++.+-|++ ...|++. -..++ ..+++++++|||+|++++++..+.+++.++++
T Consensus 4 ykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahal 83 (213)
T KOG0095|consen 4 YKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHAL 83 (213)
T ss_pred cceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceE
Confidence 4566899999999999999999999988876 4456554 33444 45568999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC-CCHHHHHHhhCCCccccCCCccccCCCCCcceEE
Q 029437 92 VYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA-ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEV 170 (193)
Q Consensus 92 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (193)
++|+|++...+|+-+-+|+.++-. ....++--|+|+||+|+.+. .-++++-+++.... ..-+
T Consensus 84 ilvydiscqpsfdclpewlreie~-yan~kvlkilvgnk~d~~drrevp~qigeefs~~q----------------dmyf 146 (213)
T KOG0095|consen 84 ILVYDISCQPSFDCLPEWLREIEQ-YANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQ----------------DMYF 146 (213)
T ss_pred EEEEecccCcchhhhHHHHHHHHH-HhhcceEEEeeccccchhhhhhhhHHHHHHHHHhh----------------hhhh
Confidence 999999999999999999999843 44467778999999999733 23333433333211 1236
Q ss_pred EEeeeecCCChhhHHHhhhhh
Q 029437 171 FMCSIVRKMGYGDGFKWLSQY 191 (193)
Q Consensus 171 ~~~Sa~~g~gv~el~~~i~~~ 191 (193)
+++||++..|++.+|..+.-.
T Consensus 147 letsakea~nve~lf~~~a~r 167 (213)
T KOG0095|consen 147 LETSAKEADNVEKLFLDLACR 167 (213)
T ss_pred hhhcccchhhHHHHHHHHHHH
Confidence 799999999999999887543
No 122
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.7e-26 Score=151.27 Aligned_cols=156 Identities=19% Similarity=0.236 Sum_probs=122.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCcc----eeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEE
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQH-QPTQYPT----SEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~----~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~v 91 (193)
++.-+|++++|++|+|||.|++++....+... ..|++.. ...+-.+.+++++|||+|++++++....+++.+.+.
T Consensus 6 YDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGA 85 (214)
T KOG0086|consen 6 YDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA 85 (214)
T ss_pred hhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccce
Confidence 55668999999999999999999998877643 2344432 233344568999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCC--CHHHHHHhhCCCccccCCCccccCCCCCcceE
Q 029437 92 VYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAA--SEEELRYHLGLSNFTTGKGKVNLADSNVRPLE 169 (193)
Q Consensus 92 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
++|+|+++.++|..+..|+.+... ...+++-+++++||.|+.++. ...|...--. . +...
T Consensus 86 lLVYD~TsrdsfnaLtnWL~DaR~-lAs~nIvviL~GnKkDL~~~R~VtflEAs~Faq--E---------------nel~ 147 (214)
T KOG0086|consen 86 LLVYDITSRDSFNALTNWLTDART-LASPNIVVILCGNKKDLDPEREVTFLEASRFAQ--E---------------NELM 147 (214)
T ss_pred EEEEeccchhhHHHHHHHHHHHHh-hCCCcEEEEEeCChhhcChhhhhhHHHHHhhhc--c---------------ccee
Confidence 999999999999999999998843 455789999999999997432 2222221111 0 2356
Q ss_pred EEEeeeecCCChhhHHHhhhh
Q 029437 170 VFMCSIVRKMGYGDGFKWLSQ 190 (193)
Q Consensus 170 ~~~~Sa~~g~gv~el~~~i~~ 190 (193)
++++||++|+|++|.|-...+
T Consensus 148 flETSa~TGeNVEEaFl~c~~ 168 (214)
T KOG0086|consen 148 FLETSALTGENVEEAFLKCAR 168 (214)
T ss_pred eeeecccccccHHHHHHHHHH
Confidence 889999999999998865443
No 123
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.94 E-value=7.9e-26 Score=157.40 Aligned_cols=153 Identities=17% Similarity=0.182 Sum_probs=104.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcccc---CCCCCcceeEEEeCCEEEEEEEcCChhhh---------HhhHHhhcccC
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDERLVQH---QPTQYPTSEELSIGKIKFKAFDLGGHQIA---------RRVWKDYYAKV 88 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~~~~~---~~t~~~~~~~~~~~~~~~~~~D~~G~~~~---------~~~~~~~~~~~ 88 (193)
.+|+++|++|+|||||++++.+..+... .+|.........+++..+.+|||||.... ..........+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLR 80 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhcc
Confidence 3799999999999999999998876421 22445555566667789999999997321 01111112336
Q ss_pred CEEEEEEECCChhhH--HHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCc
Q 029437 89 DAVVYLVDAYDKERF--AESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVR 166 (193)
Q Consensus 89 d~vl~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (193)
|++++|+|++++.++ .....++..+... ..+.|+++++||+|+.......+..+... . .
T Consensus 81 d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~--~---------------~ 141 (168)
T cd01897 81 AAVLFLFDPSETCGYSLEEQLSLFEEIKPL--FKNKPVIVVLNKIDLLTFEDLSEIEEEEE--L---------------E 141 (168)
T ss_pred CcEEEEEeCCcccccchHHHHHHHHHHHhh--cCcCCeEEEEEccccCchhhHHHHHHhhh--h---------------c
Confidence 899999999887543 4444555554322 24899999999999974333222111110 0 2
Q ss_pred ceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 167 PLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 167 ~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
..++++|||++|.|+++++++|.+.+
T Consensus 142 ~~~~~~~Sa~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 142 GEEVLKISTLTEEGVDEVKNKACELL 167 (168)
T ss_pred cCceEEEEecccCCHHHHHHHHHHHh
Confidence 35789999999999999999998865
No 124
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.94 E-value=2.2e-25 Score=161.14 Aligned_cols=157 Identities=19% Similarity=0.317 Sum_probs=121.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcceeEEEe----CCEEEEEEEcCChhhhHhhHHhhcccCCEE
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTSEELSI----GKIKFKAFDLGGHQIARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~----~~~~~~~~D~~G~~~~~~~~~~~~~~~d~v 91 (193)
....+||+++|++|||||||++++..+.+.. ..+|.+.......+ +.+.+.+||++|+..+..++..++..++++
T Consensus 6 ~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~ 85 (215)
T PTZ00132 6 EVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCA 85 (215)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEE
Confidence 4567999999999999999998887777653 55677665544433 458899999999999988888888999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEE
Q 029437 92 VYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVF 171 (193)
Q Consensus 92 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (193)
++|+|+++..++..+..|+..+... ..+.|+++++||+|+.......+...... . ....++
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~i~~~--~~~~~i~lv~nK~Dl~~~~~~~~~~~~~~--~---------------~~~~~~ 146 (215)
T PTZ00132 86 IIMFDVTSRITYKNVPNWHRDIVRV--CENIPIVLVGNKVDVKDRQVKARQITFHR--K---------------KNLQYY 146 (215)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECccCccccCCHHHHHHHH--H---------------cCCEEE
Confidence 9999999999999998888877543 25799999999999863221111111111 0 224689
Q ss_pred EeeeecCCChhhHHHhhhhhc
Q 029437 172 MCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 172 ~~Sa~~g~gv~el~~~i~~~~ 192 (193)
++||++|.|+++.|.+|.+.+
T Consensus 147 e~Sa~~~~~v~~~f~~ia~~l 167 (215)
T PTZ00132 147 DISAKSNYNFEKPFLWLARRL 167 (215)
T ss_pred EEeCCCCCCHHHHHHHHHHHH
Confidence 999999999999999998764
No 125
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.94 E-value=8.6e-26 Score=157.44 Aligned_cols=156 Identities=21% Similarity=0.197 Sum_probs=109.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc---cCCCCCcceeEEEeCCE-EEEEEEcCChhh----hHhhHHh---hcccCCE
Q 029437 22 KILFLGLDNAGKTTLLHMLKDERLVQ---HQPTQYPTSEELSIGKI-KFKAFDLGGHQI----ARRVWKD---YYAKVDA 90 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~-~~~~~D~~G~~~----~~~~~~~---~~~~~d~ 90 (193)
+|+++|.+|||||||++++.+.+... ..+|..+....+.+.+. .+.+|||||... .+.+... .+..+|+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRL 81 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCE
Confidence 68999999999999999998765421 12355566666666665 999999999632 1112222 2456999
Q ss_pred EEEEEECCCh-hhHHHHHHHHHHHHcCC-CCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcce
Q 029437 91 VVYLVDAYDK-ERFAESKKELDALLSDE-ALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPL 168 (193)
Q Consensus 91 vl~v~d~~~~-~~~~~~~~~~~~~~~~~-~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (193)
+++|+|++++ ++++....+...+.... ...+.|+++++||+|+.+.....+....+.... ...
T Consensus 82 vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~---------------~~~ 146 (170)
T cd01898 82 LLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKEL---------------WGK 146 (170)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhhC---------------CCC
Confidence 9999999998 67777777766664332 124789999999999975443333222221110 124
Q ss_pred EEEEeeeecCCChhhHHHhhhhhc
Q 029437 169 EVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 169 ~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
.++++||++|.|+++++++|.+.+
T Consensus 147 ~~~~~Sa~~~~gi~~l~~~i~~~~ 170 (170)
T cd01898 147 PVFPISALTGEGLDELLRKLAELL 170 (170)
T ss_pred CEEEEecCCCCCHHHHHHHHHhhC
Confidence 689999999999999999998753
No 126
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.94 E-value=6.3e-26 Score=160.64 Aligned_cols=167 Identities=17% Similarity=0.248 Sum_probs=111.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc-eeEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEE
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPT-SEELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVD 96 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d 96 (193)
.||+|+|++|+|||||++++....+.+ ..+|.... ...+... ...+.+||++|+..+.......+..+|++++|+|
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~ 81 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFA 81 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEE
Confidence 589999999999999999998777654 23343322 2233333 3568999999998887766667789999999999
Q ss_pred CCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeee
Q 029437 97 AYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIV 176 (193)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 176 (193)
++++++++.+...|...+.. ..++.|+++++||+|+.......+. ........... ...+++ ..+...+++|||+
T Consensus 82 i~~~~s~~~~~~~~~~~i~~-~~~~~piilvgnK~Dl~~~~~~~~~--~~~~~~~~~~~-~~~~~~-~~~~~~~~e~Sa~ 156 (187)
T cd04129 82 VDTPDSLENVRTKWIEEVRR-YCPNVPVILVGLKKDLRQDAVAKEE--YRTQRFVPIQQ-GKRVAK-EIGAKKYMECSAL 156 (187)
T ss_pred CCCHHHHHHHHHHHHHHHHH-hCCCCCEEEEeeChhhhhCcccccc--cccCCcCCHHH-HHHHHH-HhCCcEEEEccCC
Confidence 99999999987544444332 2357999999999998532111000 00000000000 000000 0123478999999
Q ss_pred cCCChhhHHHhhhhhc
Q 029437 177 RKMGYGDGFKWLSQYI 192 (193)
Q Consensus 177 ~g~gv~el~~~i~~~~ 192 (193)
+|.|++++|+++.+.+
T Consensus 157 ~~~~v~~~f~~l~~~~ 172 (187)
T cd04129 157 TGEGVDDVFEAATRAA 172 (187)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999998653
No 127
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=2.7e-26 Score=153.33 Aligned_cols=165 Identities=33% Similarity=0.557 Sum_probs=140.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCC--------ccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccC
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDER--------LVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKV 88 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~--------~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~ 88 (193)
.+..+.++|+|..+||||||+.+....- ...-.+|++.+.+++..++..+.+||.+|++..++++..++..+
T Consensus 14 ~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgGQe~lrSlw~~yY~~~ 93 (197)
T KOG0076|consen 14 KKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGGQESLRSLWKKYYWLA 93 (197)
T ss_pred hhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCChHHHHHHHHHHHHHh
Confidence 6778899999999999999998874322 12345799999999999999999999999999999999999999
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcce
Q 029437 89 DAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPL 168 (193)
Q Consensus 89 d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (193)
|++++++|+++++.++.....++.+.......++|+++.+||.|+.......++...++.... + ..+..
T Consensus 94 H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~--------~---~~rd~ 162 (197)
T KOG0076|consen 94 HGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAEL--------I---PRRDN 162 (197)
T ss_pred ceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhh--------c---CCccC
Confidence 999999999999999888888888876666789999999999999988888887777764110 0 11446
Q ss_pred EEEEeeeecCCChhhHHHhhhhhc
Q 029437 169 EVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 169 ~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
.+.++||.+|+||+|..+|+++.+
T Consensus 163 ~~~pvSal~gegv~egi~w~v~~~ 186 (197)
T KOG0076|consen 163 PFQPVSALTGEGVKEGIEWLVKKL 186 (197)
T ss_pred ccccchhhhcccHHHHHHHHHHHH
Confidence 789999999999999999998865
No 128
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.93 E-value=1e-24 Score=156.44 Aligned_cols=153 Identities=20% Similarity=0.235 Sum_probs=109.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc---cCCCCCcceeEEEeCCE-EEEEEEcCChhh---------hHhhHHhh
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQ---HQPTQYPTSEELSIGKI-KFKAFDLGGHQI---------ARRVWKDY 84 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~-~~~~~D~~G~~~---------~~~~~~~~ 84 (193)
...++|+|+|++|||||||++++.+..+.. ..+|..+....+.+.+. .+.+|||||... +.... ..
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~ 117 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTL-EE 117 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHH-HH
Confidence 445899999999999999999999886432 23455566666666554 899999999722 22222 23
Q ss_pred cccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCC
Q 029437 85 YAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSN 164 (193)
Q Consensus 85 ~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (193)
+..+|++++|+|++++.+......+.. .+......+.|+++|+||+|+.+..... .... .
T Consensus 118 ~~~~d~ii~v~D~~~~~~~~~~~~~~~-~l~~~~~~~~~viiV~NK~Dl~~~~~~~---~~~~--~-------------- 177 (204)
T cd01878 118 VAEADLLLHVVDASDPDYEEQIETVEK-VLKELGAEDIPMILVLNKIDLLDDEELE---ERLE--A-------------- 177 (204)
T ss_pred HhcCCeEEEEEECCCCChhhHHHHHHH-HHHHcCcCCCCEEEEEEccccCChHHHH---HHhh--c--------------
Confidence 568999999999998877665544333 3333344579999999999997432221 1111 0
Q ss_pred CcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 165 VRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 165 ~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
...+++++||++|.|+++++++|.+.+
T Consensus 178 -~~~~~~~~Sa~~~~gi~~l~~~L~~~~ 204 (204)
T cd01878 178 -GRPDAVFISAKTGEGLDELLEAIEELL 204 (204)
T ss_pred -CCCceEEEEcCCCCCHHHHHHHHHhhC
Confidence 235689999999999999999998764
No 129
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.93 E-value=9.9e-25 Score=153.39 Aligned_cols=149 Identities=22% Similarity=0.225 Sum_probs=104.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC-------ccc-cCC----------CCCcceeEEE-----eCCEEEEEEEcCChhhhH
Q 029437 22 KILFLGLDNAGKTTLLHMLKDER-------LVQ-HQP----------TQYPTSEELS-----IGKIKFKAFDLGGHQIAR 78 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~~~-------~~~-~~~----------t~~~~~~~~~-----~~~~~~~~~D~~G~~~~~ 78 (193)
+|+++|++|+|||||++++.+.. +.. ..+ +.......+. ..+..+.+|||||+..+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 68999999999999999998642 111 111 1111122232 246789999999999998
Q ss_pred hhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCH---HHHHHhhCCCccccCC
Q 029437 79 RVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASE---EELRYHLGLSNFTTGK 155 (193)
Q Consensus 79 ~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~ 155 (193)
.....++..+|++++|+|+++..+.+....+. .... .++|+++++||+|+...... .++.+.++..
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~-~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~------ 150 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFY-LALE----NNLEIIPVINKIDLPSADPERVKQQIEDVLGLD------ 150 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHH-HHHH----cCCCEEEEEECCCCCcCCHHHHHHHHHHHhCCC------
Confidence 88888899999999999998875554443333 2222 47899999999998643211 1233333221
Q ss_pred CccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 156 GKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
...++++||++|.|+++++++|.+.+
T Consensus 151 -----------~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 151 -----------PSEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred -----------cccEEEeeccCCCCHHHHHHHHHhhC
Confidence 13589999999999999999998765
No 130
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.93 E-value=4e-24 Score=152.99 Aligned_cols=169 Identities=20% Similarity=0.286 Sum_probs=123.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEe----CCEEEEEEEcCChhhhHhhHHhhcccC-CEEEEEEE
Q 029437 22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSI----GKIKFKAFDLGGHQIARRVWKDYYAKV-DAVVYLVD 96 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~----~~~~~~~~D~~G~~~~~~~~~~~~~~~-d~vl~v~d 96 (193)
+|+++|++|||||||++++....+....++...+...... .+..+.+||+||+.+++..+..+++.+ +++|+|+|
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD 81 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD 81 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence 6899999999999999999998877665554444444333 357899999999999998888888888 99999999
Q ss_pred CCCh-hhHHHHHHHHHHHHcCC--CCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCcc----cc--------CCCc--cc
Q 029437 97 AYDK-ERFAESKKELDALLSDE--ALANVPFLVLGNKIDIPYAASEEELRYHLGLSNF----TT--------GKGK--VN 159 (193)
Q Consensus 97 ~~~~-~~~~~~~~~~~~~~~~~--~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~----~~--------~~~~--~~ 159 (193)
+.+. .++....+++..++... ..+++|+++++||+|+..+...+.+.+.++...- +. +... +.
T Consensus 82 ~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~r~~~l~~~~~~~~~~~~ 161 (203)
T cd04105 82 SATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRESRSKSLSSLDGDEGSKES 161 (203)
T ss_pred CccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccccccc
Confidence 9987 67788888877765432 2258999999999999876665554444431110 00 0000 00
Q ss_pred ---------cCCCCCcceEEEEeeeecCC-ChhhHHHhhhh
Q 029437 160 ---------LADSNVRPLEVFMCSIVRKM-GYGDGFKWLSQ 190 (193)
Q Consensus 160 ---------~~~~~~~~~~~~~~Sa~~g~-gv~el~~~i~~ 190 (193)
--+.....+.+++||++.+. |++++.+||.+
T Consensus 162 ~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~~ 202 (203)
T cd04105 162 LGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWIDE 202 (203)
T ss_pred cccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHhh
Confidence 00111246889999999887 69999999975
No 131
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.93 E-value=9.9e-26 Score=148.51 Aligned_cols=157 Identities=18% Similarity=0.226 Sum_probs=123.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccccC-CCC----CcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEE
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQ-PTQ----YPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~-~t~----~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~v 91 (193)
....||++++|..-+|||||.-+++...|...- .|. ......+......+.+|||+|+++|..+-+-+++..+++
T Consensus 10 ~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGa 89 (218)
T KOG0088|consen 10 KSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGA 89 (218)
T ss_pred CceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCce
Confidence 346799999999999999999999988876422 121 112333444567899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCC--CCCCHHHHHHhhCCCccccCCCccccCCCCCcceE
Q 029437 92 VYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIP--YAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLE 169 (193)
Q Consensus 92 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
++|+|++|+++|+.+..|..++..... ..+-+++|+||+|+. +++...+....-+. -...
T Consensus 90 lLVyDITDrdSFqKVKnWV~Elr~mlG-nei~l~IVGNKiDLEeeR~Vt~qeAe~YAes-----------------vGA~ 151 (218)
T KOG0088|consen 90 LLVYDITDRDSFQKVKNWVLELRTMLG-NEIELLIVGNKIDLEEERQVTRQEAEAYAES-----------------VGAL 151 (218)
T ss_pred EEEEeccchHHHHHHHHHHHHHHHHhC-CeeEEEEecCcccHHHhhhhhHHHHHHHHHh-----------------hchh
Confidence 999999999999999999999865543 578899999999997 34444433222221 1245
Q ss_pred EEEeeeecCCChhhHHHhhhhh
Q 029437 170 VFMCSIVRKMGYGDGFKWLSQY 191 (193)
Q Consensus 170 ~~~~Sa~~g~gv~el~~~i~~~ 191 (193)
++++||+.+.||+|+|+.+.+.
T Consensus 152 y~eTSAk~N~Gi~elFe~Lt~~ 173 (218)
T KOG0088|consen 152 YMETSAKDNVGISELFESLTAK 173 (218)
T ss_pred heecccccccCHHHHHHHHHHH
Confidence 7899999999999999988764
No 132
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.93 E-value=1.3e-24 Score=150.53 Aligned_cols=149 Identities=21% Similarity=0.121 Sum_probs=102.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC---ccc---cCCCCCcceeEEEeC-CEEEEEEEcCChhhhHhhHHhhcccCCEEEE
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDER---LVQ---HQPTQYPTSEELSIG-KIKFKAFDLGGHQIARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~---~~~---~~~t~~~~~~~~~~~-~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~ 93 (193)
+.|+++|++|||||||++++.+.. +.. ...|.......+.+. +..+.+|||||++.+.......+..+|++++
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~ 80 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL 80 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence 368999999999999999998643 221 122444444455555 6789999999999887766677889999999
Q ss_pred EEECCC---hhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCH----HHHHHhhCCCccccCCCccccCCCCCc
Q 029437 94 LVDAYD---KERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASE----EELRYHLGLSNFTTGKGKVNLADSNVR 166 (193)
Q Consensus 94 v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (193)
|+|+++ +++...+ .. +... ...|+++++||+|+...... .++.+.+.... ..
T Consensus 81 V~d~~~~~~~~~~~~~----~~-~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~--------------~~ 139 (164)
T cd04171 81 VVAADEGIMPQTREHL----EI-LELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTF--------------LA 139 (164)
T ss_pred EEECCCCccHhHHHHH----HH-HHHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcC--------------cC
Confidence 999977 3332222 11 1111 12499999999999743211 22223322110 02
Q ss_pred ceEEEEeeeecCCChhhHHHhhhh
Q 029437 167 PLEVFMCSIVRKMGYGDGFKWLSQ 190 (193)
Q Consensus 167 ~~~~~~~Sa~~g~gv~el~~~i~~ 190 (193)
..+++++||++|.|+++++++|.+
T Consensus 140 ~~~~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 140 DAPIFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred CCcEEEEeCCCCcCHHHHHHHHhh
Confidence 357899999999999999999864
No 133
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=4.8e-26 Score=150.10 Aligned_cols=155 Identities=20% Similarity=0.285 Sum_probs=123.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccccC-CCCCc--ceeEEEeC-----------CEEEEEEEcCChhhhHhhHH
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQ-PTQYP--TSEELSIG-----------KIKFKAFDLGGHQIARRVWK 82 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~-~t~~~--~~~~~~~~-----------~~~~~~~D~~G~~~~~~~~~ 82 (193)
++.-++.+.+|++|+||||++.+++...|.... .|+++ ....+.+. .+.+++|||+|+++++++..
T Consensus 6 ydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTT 85 (219)
T KOG0081|consen 6 YDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTT 85 (219)
T ss_pred HHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHH
Confidence 445578889999999999999999999987643 34443 22333221 26789999999999999999
Q ss_pred hhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHH---HHHhhCCCccccCCCc
Q 029437 83 DYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEE---LRYHLGLSNFTTGKGK 157 (193)
Q Consensus 83 ~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~---~~~~~~~~~~~~~~~~ 157 (193)
.+++.+-++++++|.++++||-+++.|+.++-.+.-..+..+++++||+|+.. .++.++ +.+++++
T Consensus 86 AFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kygl--------- 156 (219)
T KOG0081|consen 86 AFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGL--------- 156 (219)
T ss_pred HHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCC---------
Confidence 99999999999999999999999999999997776677888999999999983 233322 4445544
Q ss_pred cccCCCCCcceEEEEeeeecCCChhhHHHhhhhh
Q 029437 158 VNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQY 191 (193)
Q Consensus 158 ~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~ 191 (193)
++|++||.+|.||++..+.+...
T Consensus 157 -----------PYfETSA~tg~Nv~kave~Lldl 179 (219)
T KOG0081|consen 157 -----------PYFETSACTGTNVEKAVELLLDL 179 (219)
T ss_pred -----------CeeeeccccCcCHHHHHHHHHHH
Confidence 55999999999999887776543
No 134
>PRK15494 era GTPase Era; Provisional
Probab=99.93 E-value=3.5e-24 Score=163.94 Aligned_cols=153 Identities=20% Similarity=0.236 Sum_probs=107.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcccc----CCCCCcceeEEEeCCEEEEEEEcCChhh-hH-------hhHHhhcc
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQH----QPTQYPTSEELSIGKIKFKAFDLGGHQI-AR-------RVWKDYYA 86 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~D~~G~~~-~~-------~~~~~~~~ 86 (193)
+..+|+++|.+|||||||++++.+..+... .+|.......+..++..+.+|||||... +. ......+.
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~ 130 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLH 130 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHhh
Confidence 456999999999999999999998887532 2344445556677888999999999742 11 11123467
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCc
Q 029437 87 KVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVR 166 (193)
Q Consensus 87 ~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (193)
.+|++++|+|+.+. +.....++...+.. .+.|+++++||+|+... ...++.+.+.... .
T Consensus 131 ~aDvil~VvD~~~s--~~~~~~~il~~l~~---~~~p~IlViNKiDl~~~-~~~~~~~~l~~~~---------------~ 189 (339)
T PRK15494 131 SADLVLLIIDSLKS--FDDITHNILDKLRS---LNIVPIFLLNKIDIESK-YLNDIKAFLTENH---------------P 189 (339)
T ss_pred hCCEEEEEEECCCC--CCHHHHHHHHHHHh---cCCCEEEEEEhhcCccc-cHHHHHHHHHhcC---------------C
Confidence 99999999998663 33444433333322 25678899999998643 3344444432211 2
Q ss_pred ceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 167 PLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 167 ~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
...++++||++|.|+++++++|.+.+
T Consensus 190 ~~~i~~iSAktg~gv~eL~~~L~~~l 215 (339)
T PRK15494 190 DSLLFPISALSGKNIDGLLEYITSKA 215 (339)
T ss_pred CcEEEEEeccCccCHHHHHHHHHHhC
Confidence 35789999999999999999998765
No 135
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.92 E-value=3.1e-24 Score=151.81 Aligned_cols=157 Identities=22% Similarity=0.262 Sum_probs=128.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCc---ceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEE
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQH-QPTQYP---TSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYL 94 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~t~~~---~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v 94 (193)
...|++++|.+|+|||+|..++....|... .||+.. ....+......+.++||+|++.+..+...++..+|++++|
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV 81 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV 81 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence 357999999999999999999999999874 566643 2333444457899999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEE
Q 029437 95 VDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFM 172 (193)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (193)
++++++.||+.+..++..+.......++|+++|+||+|+.. .+..++-..--. ...+.+++
T Consensus 82 ysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~-----------------~~~~~f~E 144 (196)
T KOG0395|consen 82 YSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALAR-----------------SWGCAFIE 144 (196)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHH-----------------hcCCcEEE
Confidence 99999999999999999997666667899999999999984 555554222210 12356899
Q ss_pred eeeecCCChhhHHHhhhhhc
Q 029437 173 CSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 173 ~Sa~~g~gv~el~~~i~~~~ 192 (193)
+||+.+.+++++|..|.+.+
T Consensus 145 ~Sak~~~~v~~~F~~L~r~~ 164 (196)
T KOG0395|consen 145 TSAKLNYNVDEVFYELVREI 164 (196)
T ss_pred eeccCCcCHHHHHHHHHHHH
Confidence 99999999999999998754
No 136
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.92 E-value=4e-24 Score=162.68 Aligned_cols=156 Identities=22% Similarity=0.216 Sum_probs=111.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc-c--cCCCCCcceeEEEe-CCEEEEEEEcCChhh-------hHhhHHhhcccCC
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDERLV-Q--HQPTQYPTSEELSI-GKIKFKAFDLGGHQI-------ARRVWKDYYAKVD 89 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~~~-~--~~~t~~~~~~~~~~-~~~~~~~~D~~G~~~-------~~~~~~~~~~~~d 89 (193)
..|+++|.||||||||++++++.... . ..+|..++...+.+ +..++.+||+||... ....+...+..++
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~ 238 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTR 238 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcC
Confidence 46899999999999999999976532 1 23477788888887 557899999999632 2223334557899
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHcC-CCCCCCcEEEEEeCCCCCCCCCHHH-HHHhhCCCccccCCCccccCCCCCcc
Q 029437 90 AVVYLVDAYDKERFAESKKELDALLSD-EALANVPFLVLGNKIDIPYAASEEE-LRYHLGLSNFTTGKGKVNLADSNVRP 167 (193)
Q Consensus 90 ~vl~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~pviiv~nK~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (193)
++++|+|+++.++++....|..++... ....+.|+++|+||+|+.......+ ..+.+ ... ..
T Consensus 239 vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~-~~~---------------~~ 302 (335)
T PRK12299 239 LLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALE-LAA---------------LG 302 (335)
T ss_pred EEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHH-HHh---------------cC
Confidence 999999999877777776666666332 1234789999999999974432221 11111 011 12
Q ss_pred eEEEEeeeecCCChhhHHHhhhhhc
Q 029437 168 LEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 168 ~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
.+++++||+++.|+++++++|.+.+
T Consensus 303 ~~i~~iSAktg~GI~eL~~~L~~~l 327 (335)
T PRK12299 303 GPVFLISAVTGEGLDELLRALWELL 327 (335)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998765
No 137
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.92 E-value=1.1e-24 Score=147.58 Aligned_cols=134 Identities=25% Similarity=0.286 Sum_probs=92.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChh-----hhHhhHHhhcccCCEEEEEEE
Q 029437 22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQ-----IARRVWKDYYAKVDAVVYLVD 96 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~-----~~~~~~~~~~~~~d~vl~v~d 96 (193)
||+++|++|+|||||++++.+..+. ..+|. .+.+.. .+|||||.. .++.+.. .++.+|++++|+|
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~-~~~t~-----~~~~~~---~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vilv~d 71 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL-YKKTQ-----AVEYND---GAIDTPGEYVENRRLYSALIV-TAADADVIALVQS 71 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc-cccce-----eEEEcC---eeecCchhhhhhHHHHHHHHH-HhhcCCEEEEEec
Confidence 7999999999999999999987653 22222 233333 789999973 3344433 4789999999999
Q ss_pred CCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC-CCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeee
Q 029437 97 AYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA-ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSI 175 (193)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 175 (193)
++++.++.. ..+ .... ..|+++++||+|+.+. ...++..+.... . ...+++++||
T Consensus 72 ~~~~~s~~~-~~~-~~~~------~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~-~---------------~~~~~~~~Sa 127 (142)
T TIGR02528 72 ATDPESRFP-PGF-ASIF------VKPVIGLVTKIDLAEADVDIERAKELLET-A---------------GAEPIFEISS 127 (142)
T ss_pred CCCCCcCCC-hhH-HHhc------cCCeEEEEEeeccCCcccCHHHHHHHHHH-c---------------CCCcEEEEec
Confidence 999987643 222 2221 2499999999999642 222222221111 1 1136799999
Q ss_pred ecCCChhhHHHhhh
Q 029437 176 VRKMGYGDGFKWLS 189 (193)
Q Consensus 176 ~~g~gv~el~~~i~ 189 (193)
++|.|++++|++|.
T Consensus 128 ~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 128 VDEQGLEALVDYLN 141 (142)
T ss_pred CCCCCHHHHHHHHh
Confidence 99999999999985
No 138
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.92 E-value=1.6e-23 Score=149.21 Aligned_cols=115 Identities=17% Similarity=0.334 Sum_probs=95.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEe-------CCEEEEEEEcCChhhhHhhHHhhcccCCE
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSI-------GKIKFKAFDLGGHQIARRVWKDYYAKVDA 90 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~-------~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 90 (193)
+||+++|++|+|||||++++....|.. ..+|++... ..+.+ ..+.+.+|||+|++.+..+...+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999988765 445666432 22333 34689999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHcCC------------------CCCCCcEEEEEeCCCCCC
Q 029437 91 VVYLVDAYDKERFAESKKELDALLSDE------------------ALANVPFLVLGNKIDIPY 135 (193)
Q Consensus 91 vl~v~d~~~~~~~~~~~~~~~~~~~~~------------------~~~~~pviiv~nK~D~~~ 135 (193)
+|+|+|++++++++++..|+.++.... ...++|+++|+||.|+..
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~ 143 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIP 143 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchh
Confidence 999999999999999999998886531 224799999999999963
No 139
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.92 E-value=9.2e-24 Score=146.88 Aligned_cols=157 Identities=23% Similarity=0.225 Sum_probs=107.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcccc---CCCCCcceeEEEeC---CEEEEEEEcCChhhhHhhHHhhcccCCEEEEEE
Q 029437 22 KILFLGLDNAGKTTLLHMLKDERLVQH---QPTQYPTSEELSIG---KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLV 95 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~~~~~~~---~~t~~~~~~~~~~~---~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~ 95 (193)
.|+++|++|+|||||++++...++... .+|.......+... +..+.+|||||+..+..++...+..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 589999999999999999998876553 22333333444443 678999999999988888888889999999999
Q ss_pred ECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeee
Q 029437 96 DAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSI 175 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 175 (193)
|+++.... .....+..+ .. .++|+++++||+|+.... .+.....+...... . .......++++++||
T Consensus 82 d~~~~~~~-~~~~~~~~~-~~---~~~p~ivv~NK~Dl~~~~-~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~Sa 148 (168)
T cd01887 82 AADDGVMP-QTIEAIKLA-KA---ANVPFIVALNKIDKPNAN-PERVKNELSELGLQ-G------EDEWGGDVQIVPTSA 148 (168)
T ss_pred ECCCCccH-HHHHHHHHH-HH---cCCCEEEEEEceeccccc-HHHHHHHHHHhhcc-c------cccccCcCcEEEeec
Confidence 99874321 112222222 11 478999999999986432 22222222111000 0 000113467999999
Q ss_pred ecCCChhhHHHhhhhh
Q 029437 176 VRKMGYGDGFKWLSQY 191 (193)
Q Consensus 176 ~~g~gv~el~~~i~~~ 191 (193)
++|.|+++++++|.+.
T Consensus 149 ~~~~gi~~l~~~l~~~ 164 (168)
T cd01887 149 KTGEGIDDLLEAILLL 164 (168)
T ss_pred ccCCCHHHHHHHHHHh
Confidence 9999999999999875
No 140
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.92 E-value=1.8e-23 Score=160.30 Aligned_cols=151 Identities=21% Similarity=0.233 Sum_probs=110.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc---cCCCCCcceeEEEe-CCEEEEEEEcCCh---------hhhHhhHHhhc
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQ---HQPTQYPTSEELSI-GKIKFKAFDLGGH---------QIARRVWKDYY 85 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~-~~~~~~~~D~~G~---------~~~~~~~~~~~ 85 (193)
..++|+++|.+|+|||||+|++++.++.. ..+|.++....+.+ ++..+.+|||+|. +.+.... ..+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tl-e~~ 266 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATL-EEV 266 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHH-HHH
Confidence 44899999999999999999999987432 34577787777877 5689999999997 2233322 346
Q ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCC
Q 029437 86 AKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNV 165 (193)
Q Consensus 86 ~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (193)
..+|++++|+|++++.+......+ ..++......+.|+++|+||+|+.+. .++.....
T Consensus 267 ~~ADlil~VvD~s~~~~~~~~~~~-~~~L~~l~~~~~piIlV~NK~Dl~~~---~~v~~~~~------------------ 324 (351)
T TIGR03156 267 READLLLHVVDASDPDREEQIEAV-EKVLEELGAEDIPQLLVYNKIDLLDE---PRIERLEE------------------ 324 (351)
T ss_pred HhCCEEEEEEECCCCchHHHHHHH-HHHHHHhccCCCCEEEEEEeecCCCh---HhHHHHHh------------------
Confidence 789999999999998776555433 33333334457899999999999642 22211110
Q ss_pred cceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 166 RPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 166 ~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
...+++++||++|.|+++++++|.+.+
T Consensus 325 ~~~~~i~iSAktg~GI~eL~~~I~~~~ 351 (351)
T TIGR03156 325 GYPEAVFVSAKTGEGLDLLLEAIAERL 351 (351)
T ss_pred CCCCEEEEEccCCCCHHHHHHHHHhhC
Confidence 012478999999999999999998753
No 141
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.92 E-value=5.4e-24 Score=144.24 Aligned_cols=141 Identities=27% Similarity=0.314 Sum_probs=102.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc---cCCCCCcceeEEEeCCEEEEEEEcCChhhh------HhhHHhhc--ccCC
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDERLVQ---HQPTQYPTSEELSIGKIKFKAFDLGGHQIA------RRVWKDYY--AKVD 89 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~------~~~~~~~~--~~~d 89 (193)
++|+++|.||+|||||+|++++..... ...|.....+.+.+.+..+.++|+||..+. ......++ ...|
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D 80 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPD 80 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCC
Confidence 589999999999999999999988432 334777788888999999999999994332 22223333 5899
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC----CCHHHHHHhhCCCccccCCCccccCCCCC
Q 029437 90 AVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA----ASEEELRYHLGLSNFTTGKGKVNLADSNV 165 (193)
Q Consensus 90 ~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (193)
++++|+|+++.+. ......++.+ .++|+++++||+|+... .+.+.+.+.++
T Consensus 81 ~ii~VvDa~~l~r---~l~l~~ql~e----~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg------------------ 135 (156)
T PF02421_consen 81 LIIVVVDATNLER---NLYLTLQLLE----LGIPVVVVLNKMDEAERKGIEIDAEKLSERLG------------------ 135 (156)
T ss_dssp EEEEEEEGGGHHH---HHHHHHHHHH----TTSSEEEEEETHHHHHHTTEEE-HHHHHHHHT------------------
T ss_pred EEEEECCCCCHHH---HHHHHHHHHH----cCCCEEEEEeCHHHHHHcCCEECHHHHHHHhC------------------
Confidence 9999999987643 3344455544 38999999999999732 24455666665
Q ss_pred cceEEEEeeeecCCChhhHHHhh
Q 029437 166 RPLEVFMCSIVRKMGYGDGFKWL 188 (193)
Q Consensus 166 ~~~~~~~~Sa~~g~gv~el~~~i 188 (193)
++++++||++|+|++++++.|
T Consensus 136 --~pvi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 136 --VPVIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp --S-EEEEBTTTTBTHHHHHHHH
T ss_pred --CCEEEEEeCCCcCHHHHHhhC
Confidence 456999999999999999876
No 142
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.92 E-value=2.4e-23 Score=147.35 Aligned_cols=163 Identities=20% Similarity=0.159 Sum_probs=112.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccccC-------------------CCCCcceeEEEeCCEEEEEEEcCChhhhHhhHH
Q 029437 22 KILFLGLDNAGKTTLLHMLKDERLVQHQ-------------------PTQYPTSEELSIGKIKFKAFDLGGHQIARRVWK 82 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~~~~~~~~-------------------~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~ 82 (193)
+|+|+|.+|||||||++++.+....... .+.........+.+..+.+|||||+..+...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 4899999999999999999877655322 233334455666788999999999998888888
Q ss_pred hhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHH----HHHhhCCCccccCCCcc
Q 029437 83 DYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEE----LRYHLGLSNFTTGKGKV 158 (193)
Q Consensus 83 ~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~~~ 158 (193)
..++.+|++++|+|+.++.+.. ....+..... .+.|+++++||+|+........ +.+.++..........
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~~~----~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 154 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQ-TREHLRIARE----GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEE- 154 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHH-HHHHHHHHHH----CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhh-
Confidence 8889999999999998765432 2233333322 5899999999999985333222 3333322110000000
Q ss_pred ccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 159 NLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 159 ~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
........+++++||++|.|+++++++|.+.+
T Consensus 155 --~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 155 --GTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred --hcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 00011347899999999999999999998875
No 143
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.92 E-value=1.7e-23 Score=156.00 Aligned_cols=150 Identities=17% Similarity=0.175 Sum_probs=100.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccccCC----CCCcceeEEEeCCEEEEEEEcCChhhh--------HhhHHhhcccCC
Q 029437 22 KILFLGLDNAGKTTLLHMLKDERLVQHQP----TQYPTSEELSIGKIKFKAFDLGGHQIA--------RRVWKDYYAKVD 89 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~G~~~~--------~~~~~~~~~~~d 89 (193)
+|+++|.||||||||+|++.+..+....+ |..........++..+.+|||||.... .......+..+|
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aD 81 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVD 81 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCC
Confidence 68999999999999999999987653222 333223333445678999999996432 112234568999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceE
Q 029437 90 AVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLE 169 (193)
Q Consensus 90 ~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
++++|+|+++..+.. ..+...+.. .+.|+++++||+|+.......+....+.... ...+
T Consensus 82 vvl~VvD~~~~~~~~---~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~---------------~~~~ 140 (270)
T TIGR00436 82 LILFVVDSDQWNGDG---EFVLTKLQN---LKRPVVLTRNKLDNKFKDKLLPLIDKYAILE---------------DFKD 140 (270)
T ss_pred EEEEEEECCCCCchH---HHHHHHHHh---cCCCEEEEEECeeCCCHHHHHHHHHHHHhhc---------------CCCc
Confidence 999999998875543 233333322 4789999999999963211111111111001 1236
Q ss_pred EEEeeeecCCChhhHHHhhhhhc
Q 029437 170 VFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
++++||++|.|+++++++|.+.+
T Consensus 141 v~~iSA~~g~gi~~L~~~l~~~l 163 (270)
T TIGR00436 141 IVPISALTGDNTSFLAAFIEVHL 163 (270)
T ss_pred eEEEecCCCCCHHHHHHHHHHhC
Confidence 89999999999999999998765
No 144
>PRK04213 GTP-binding protein; Provisional
Probab=99.91 E-value=2.6e-24 Score=154.04 Aligned_cols=158 Identities=21% Similarity=0.243 Sum_probs=100.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcceeEEEeCCEEEEEEEcCC-----------hhhhHhhHHhhc
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTSEELSIGKIKFKAFDLGG-----------HQIARRVWKDYY 85 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~D~~G-----------~~~~~~~~~~~~ 85 (193)
...++|+++|++|+|||||++++.+..+.. ..|+.......+.+. .+.+||||| ++.++..+..++
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 84 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNHYDWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYI 84 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceEEeec--ceEEEeCCccccccccCHHHHHHHHHHHHHHH
Confidence 356899999999999999999999877542 223322223333333 689999999 456666555554
Q ss_pred c----cCCEEEEEEECCChhhH-H--------HHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCC--CHHHHHHhhCCCc
Q 029437 86 A----KVDAVVYLVDAYDKERF-A--------ESKKELDALLSDEALANVPFLVLGNKIDIPYAA--SEEELRYHLGLSN 150 (193)
Q Consensus 86 ~----~~d~vl~v~d~~~~~~~-~--------~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~--~~~~~~~~~~~~~ 150 (193)
. .++++++|+|.++...+ . .....+...+. ..++|+++++||+|+.... ...++.+.++...
T Consensus 85 ~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~ 161 (201)
T PRK04213 85 EDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR---ELGIPPIVAVNKMDKIKNRDEVLDEIAERLGLYP 161 (201)
T ss_pred HhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH---HcCCCeEEEEECccccCcHHHHHHHHHHHhcCCc
Confidence 3 46788899998653221 0 00111112222 2479999999999996433 2233444444311
Q ss_pred cccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 151 FTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
. .......++++||++| |+++++++|.+.+
T Consensus 162 --------~---~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~ 191 (201)
T PRK04213 162 --------P---WRQWQDIIAPISAKKG-GIEELKEAIRKRL 191 (201)
T ss_pred --------c---ccccCCcEEEEecccC-CHHHHHHHHHHhh
Confidence 0 0001235899999999 9999999998765
No 145
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.91 E-value=2.9e-23 Score=141.25 Aligned_cols=150 Identities=25% Similarity=0.333 Sum_probs=112.4
Q ss_pred EEcCCCCCHHHHHHHHhcCCc-cc-cCCCCCcceeEEEeC----CEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECC
Q 029437 25 FLGLDNAGKTTLLHMLKDERL-VQ-HQPTQYPTSEELSIG----KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAY 98 (193)
Q Consensus 25 v~G~~~~GKssl~~~l~~~~~-~~-~~~t~~~~~~~~~~~----~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~ 98 (193)
++|++|+|||||++++.+... .. ..++. ......... +..+.+||+||...........++.+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999998876 22 33343 444444443 678999999999888877777889999999999999
Q ss_pred ChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHH-HhhCCCccccCCCccccCCCCCcceEEEEeeeec
Q 029437 99 DKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELR-YHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVR 177 (193)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 177 (193)
++.+......++..........+.|+++++||+|+.......... ....... ...+++++|+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~s~~~ 144 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKE---------------LGVPYFETSAKT 144 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhh---------------cCCcEEEEecCC
Confidence 998888877774444444455799999999999997544333321 1111111 346789999999
Q ss_pred CCChhhHHHhhhh
Q 029437 178 KMGYGDGFKWLSQ 190 (193)
Q Consensus 178 g~gv~el~~~i~~ 190 (193)
+.|+++++++|.+
T Consensus 145 ~~~i~~~~~~l~~ 157 (157)
T cd00882 145 GENVEELFEELAE 157 (157)
T ss_pred CCChHHHHHHHhC
Confidence 9999999999863
No 146
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.91 E-value=4.8e-23 Score=141.31 Aligned_cols=153 Identities=23% Similarity=0.334 Sum_probs=111.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEEEEE
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAVVYL 94 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v 94 (193)
.+||+++|++|+|||||++++....+.. ..++..... ..+..++ ..+.+||+||+..+..........++.++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 3699999999999999999999888443 223333333 3355666 7899999999998888888888889999999
Q ss_pred EECCCh-hhHHHHH-HHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEE
Q 029437 95 VDAYDK-ERFAESK-KELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFM 172 (193)
Q Consensus 95 ~d~~~~-~~~~~~~-~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (193)
+|.... .++.... .+...+..... .+.|+++++||+|+.......+....+... ...++++
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~----------------~~~~~~~ 143 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAE-SNVPIILVGNKIDLRDAKLKTHVAFLFAKL----------------NGEPIIP 143 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcc-cCCcEEEEEEcccCCcchhhHHHHHHHhhc----------------cCCceEE
Confidence 998776 5555554 44444433332 288999999999997543233333333221 2245899
Q ss_pred eeeecCCChhhHHHhhh
Q 029437 173 CSIVRKMGYGDGFKWLS 189 (193)
Q Consensus 173 ~Sa~~g~gv~el~~~i~ 189 (193)
+||++|.|+++++++|.
T Consensus 144 ~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 144 LSAETGKNIDSAFKIVE 160 (161)
T ss_pred eecCCCCCHHHHHHHhh
Confidence 99999999999999985
No 147
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.91 E-value=3.6e-23 Score=142.15 Aligned_cols=144 Identities=20% Similarity=0.186 Sum_probs=104.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccccCC----CCCcceeEEEeCCEEEEEEEcCChhhhHh--------hHHhhcccC
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDERLVQHQP----TQYPTSEELSIGKIKFKAFDLGGHQIARR--------VWKDYYAKV 88 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~G~~~~~~--------~~~~~~~~~ 88 (193)
++|+++|++|+|||||++++.+.......+ +.......+...+.++.+|||||...... .....+..+
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 81 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEA 81 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhC
Confidence 589999999999999999999887543222 23333455666778999999999654321 122355789
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcce
Q 029437 89 DAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPL 168 (193)
Q Consensus 89 d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (193)
|++++|+|++++.+......+.. ..+.|+++++||+|+...... . . .....
T Consensus 82 ~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~vi~v~nK~D~~~~~~~-------~-~--------------~~~~~ 132 (157)
T cd04164 82 DLVLFVIDASRGLDEEDLEILEL-------PADKPIIVVLNKSDLLPDSEL-------L-S--------------LLAGK 132 (157)
T ss_pred CEEEEEEECCCCCCHHHHHHHHh-------hcCCCEEEEEEchhcCCcccc-------c-c--------------ccCCC
Confidence 99999999998765544332222 358999999999999743322 0 0 11345
Q ss_pred EEEEeeeecCCChhhHHHhhhhhcC
Q 029437 169 EVFMCSIVRKMGYGDGFKWLSQYIK 193 (193)
Q Consensus 169 ~~~~~Sa~~g~gv~el~~~i~~~~~ 193 (193)
+++++||+++.|+++++++|.+.++
T Consensus 133 ~~~~~Sa~~~~~v~~l~~~l~~~~~ 157 (157)
T cd04164 133 PIIAISAKTGEGLDELKEALLELAG 157 (157)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhC
Confidence 7899999999999999999987653
No 148
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.91 E-value=4e-25 Score=153.43 Aligned_cols=169 Identities=21% Similarity=0.319 Sum_probs=123.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCc-ceeEEE---eCCEEEEEEEcCChhhhHhhHHhhcccCCEEEE
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYP-TSEELS---IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~-~~~~~~---~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~ 93 (193)
..+|++|+|+.++|||+|+-.+..+.|+. +.||+-. ....+. ...+.+.+|||+|++.|..+++..++.+|.+|+
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~ 82 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLL 82 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEEE
Confidence 45799999999999999999999888876 5566542 223333 445889999999999999888888999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCH-HHHHHhhCCCccccCCCccccCCCCCcceEEEE
Q 029437 94 LVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASE-EELRYHLGLSNFTTGKGKVNLADSNVRPLEVFM 172 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (193)
||++.++++++++...|.+-+.+ ..+++|+|+|++|.|+...... +++... +....+.. ....+++ ..+...+++
T Consensus 83 cfsv~~p~S~~nv~~kW~pEi~~-~cp~vpiiLVGtk~DLr~d~~~~~~l~~~-~~~~Vt~~-~g~~lA~-~iga~~y~E 158 (198)
T KOG0393|consen 83 CFSVVSPESFENVKSKWIPEIKH-HCPNVPIILVGTKADLRDDPSTLEKLQRQ-GLEPVTYE-QGLELAK-EIGAVKYLE 158 (198)
T ss_pred EEEcCChhhHHHHHhhhhHHHHh-hCCCCCEEEEeehHHhhhCHHHHHHHHhc-cCCcccHH-HHHHHHH-HhCcceeee
Confidence 99999999999988766665544 3489999999999999833211 122211 11121111 1112222 224578999
Q ss_pred eeeecCCChhhHHHhhhhh
Q 029437 173 CSIVRKMGYGDGFKWLSQY 191 (193)
Q Consensus 173 ~Sa~~g~gv~el~~~i~~~ 191 (193)
|||++..|+.++|+....+
T Consensus 159 cSa~tq~~v~~vF~~a~~~ 177 (198)
T KOG0393|consen 159 CSALTQKGVKEVFDEAIRA 177 (198)
T ss_pred ehhhhhCCcHHHHHHHHHH
Confidence 9999999999999876554
No 149
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.91 E-value=1e-23 Score=147.67 Aligned_cols=153 Identities=22% Similarity=0.225 Sum_probs=106.3
Q ss_pred EEcCCCCCHHHHHHHHhcCCcc-c--cCCCCCcceeEEEeC-CEEEEEEEcCChhhh----Hh---hHHhhcccCCEEEE
Q 029437 25 FLGLDNAGKTTLLHMLKDERLV-Q--HQPTQYPTSEELSIG-KIKFKAFDLGGHQIA----RR---VWKDYYAKVDAVVY 93 (193)
Q Consensus 25 v~G~~~~GKssl~~~l~~~~~~-~--~~~t~~~~~~~~~~~-~~~~~~~D~~G~~~~----~~---~~~~~~~~~d~vl~ 93 (193)
++|++|||||||++++.+.+.. . ..+|..+....+.++ +..+.+|||||.... +. .+...++.+|++++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~ 80 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILH 80 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEE
Confidence 5799999999999999988641 1 223556666667777 889999999996321 11 22334678999999
Q ss_pred EEECCCh------hhHHHHHHHHHHHHcCCC------CCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccC
Q 029437 94 LVDAYDK------ERFAESKKELDALLSDEA------LANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLA 161 (193)
Q Consensus 94 v~d~~~~------~~~~~~~~~~~~~~~~~~------~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (193)
|+|+.++ .++.....+...+..... ..+.|+++++||+|+.......+.........
T Consensus 81 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~----------- 149 (176)
T cd01881 81 VVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALE----------- 149 (176)
T ss_pred EEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcC-----------
Confidence 9999887 456666666665543322 24799999999999974333222210011111
Q ss_pred CCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 162 DSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 162 ~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
....++++||++|.|+++++++|.+.+
T Consensus 150 ----~~~~~~~~Sa~~~~gl~~l~~~l~~~~ 176 (176)
T cd01881 150 ----EGAEVVPISAKTEEGLDELIRAIYELL 176 (176)
T ss_pred ----CCCCEEEEehhhhcCHHHHHHHHHhhC
Confidence 235689999999999999999997653
No 150
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.91 E-value=2.5e-23 Score=158.24 Aligned_cols=157 Identities=21% Similarity=0.206 Sum_probs=111.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc---cCCCCCcceeEEEeCC-EEEEEEEcCChhh-------hHhhHHhhcccCC
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDERLVQ---HQPTQYPTSEELSIGK-IKFKAFDLGGHQI-------ARRVWKDYYAKVD 89 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~-~~~~~~D~~G~~~-------~~~~~~~~~~~~d 89 (193)
..|+++|.||||||||++++++..... ..+|..++...+.+.+ ..+.+||+||... ....+...+..++
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhierad 237 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERTR 237 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhhC
Confidence 579999999999999999999765321 2346777788888776 8999999999742 2222333456799
Q ss_pred EEEEEEECCCh---hhHHHHHHHHHHHHcC-CCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCC
Q 029437 90 AVVYLVDAYDK---ERFAESKKELDALLSD-EALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNV 165 (193)
Q Consensus 90 ~vl~v~d~~~~---~~~~~~~~~~~~~~~~-~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (193)
++++|+|+++. +.++....+..++... ....+.|+++|+||+|+......++..+.+....
T Consensus 238 ~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~~--------------- 302 (329)
T TIGR02729 238 VLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKKAL--------------- 302 (329)
T ss_pred EEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHHHc---------------
Confidence 99999999876 4556665555554322 1235789999999999975433333333322111
Q ss_pred cceEEEEeeeecCCChhhHHHhhhhhcC
Q 029437 166 RPLEVFMCSIVRKMGYGDGFKWLSQYIK 193 (193)
Q Consensus 166 ~~~~~~~~Sa~~g~gv~el~~~i~~~~~ 193 (193)
..+++++||+++.|+++++++|.+.++
T Consensus 303 -~~~vi~iSAktg~GI~eL~~~I~~~l~ 329 (329)
T TIGR02729 303 -GKPVFPISALTGEGLDELLYALAELLE 329 (329)
T ss_pred -CCcEEEEEccCCcCHHHHHHHHHHHhC
Confidence 146899999999999999999988763
No 151
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=4.1e-23 Score=133.90 Aligned_cols=156 Identities=21% Similarity=0.267 Sum_probs=122.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccccCC-CCCc----ceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEE
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQP-TQYP----TSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~-t~~~----~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~v 91 (193)
+..-++-+++|+-|+|||.|++++...+|....| |++. ....+....+++++|||+|+++++.....+++.+.+.
T Consensus 8 ysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaaga 87 (215)
T KOG0097|consen 8 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA 87 (215)
T ss_pred hhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccce
Confidence 3456889999999999999999999998876555 4443 3344455679999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceE
Q 029437 92 VYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLE 169 (193)
Q Consensus 92 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
++|+|++.+.++.++..|+....+. ..++..+++++||.|+.. .+.-++... +... +...
T Consensus 88 lmvyditrrstynhlsswl~dar~l-tnpnt~i~lignkadle~qrdv~yeeak~-faee----------------ngl~ 149 (215)
T KOG0097|consen 88 LMVYDITRRSTYNHLSSWLTDARNL-TNPNTVIFLIGNKADLESQRDVTYEEAKE-FAEE----------------NGLM 149 (215)
T ss_pred eEEEEehhhhhhhhHHHHHhhhhcc-CCCceEEEEecchhhhhhcccCcHHHHHH-HHhh----------------cCeE
Confidence 9999999999999998988877543 447888999999999973 333333222 2111 2367
Q ss_pred EEEeeeecCCChhhHHHhhhh
Q 029437 170 VFMCSIVRKMGYGDGFKWLSQ 190 (193)
Q Consensus 170 ~~~~Sa~~g~gv~el~~~i~~ 190 (193)
++++||++|+++++.|-.-.+
T Consensus 150 fle~saktg~nvedafle~ak 170 (215)
T KOG0097|consen 150 FLEASAKTGQNVEDAFLETAK 170 (215)
T ss_pred EEEecccccCcHHHHHHHHHH
Confidence 899999999999987755443
No 152
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.91 E-value=3.5e-23 Score=142.52 Aligned_cols=146 Identities=24% Similarity=0.196 Sum_probs=101.8
Q ss_pred EEcCCCCCHHHHHHHHhcCCccc-cC--CCCCcceeEEEeCCEEEEEEEcCChhhhHh------hHHhhc--ccCCEEEE
Q 029437 25 FLGLDNAGKTTLLHMLKDERLVQ-HQ--PTQYPTSEELSIGKIKFKAFDLGGHQIARR------VWKDYY--AKVDAVVY 93 (193)
Q Consensus 25 v~G~~~~GKssl~~~l~~~~~~~-~~--~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~------~~~~~~--~~~d~vl~ 93 (193)
|+|.+|+|||||++++.+..+.. .. .|.......+.+++..+.+|||||+..+.. +...++ +.+|++++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 80 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVN 80 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEE
Confidence 57999999999999999876332 22 355556667777788999999999876543 234444 48999999
Q ss_pred EEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEe
Q 029437 94 LVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMC 173 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
|+|+.++++.. .++..+.. .++|+++++||+|+............+... ...+++++
T Consensus 81 v~d~~~~~~~~---~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~----------------~~~~~~~i 137 (158)
T cd01879 81 VVDATNLERNL---YLTLQLLE----LGLPVVVALNMIDEAEKRGIKIDLDKLSEL----------------LGVPVVPT 137 (158)
T ss_pred EeeCCcchhHH---HHHHHHHH----cCCCEEEEEehhhhcccccchhhHHHHHHh----------------hCCCeEEE
Confidence 99998865422 23333322 378999999999997433221111111100 12468999
Q ss_pred eeecCCChhhHHHhhhhhcC
Q 029437 174 SIVRKMGYGDGFKWLSQYIK 193 (193)
Q Consensus 174 Sa~~g~gv~el~~~i~~~~~ 193 (193)
||.+|.|+++++++|.+.++
T Consensus 138 Sa~~~~~~~~l~~~l~~~~~ 157 (158)
T cd01879 138 SARKGEGIDELKDAIAELAE 157 (158)
T ss_pred EccCCCCHHHHHHHHHHHhc
Confidence 99999999999999987653
No 153
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.91 E-value=7.8e-23 Score=145.38 Aligned_cols=157 Identities=18% Similarity=0.130 Sum_probs=102.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC----cc------ccCCCCCcceeEEEeC--------------CEEEEEEEcCChhh
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDER----LV------QHQPTQYPTSEELSIG--------------KIKFKAFDLGGHQI 76 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~----~~------~~~~t~~~~~~~~~~~--------------~~~~~~~D~~G~~~ 76 (193)
++|+++|++|+|||||+++++... +. ....|.+.....+.+. +..+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 589999999999999999998631 11 1123444444444433 67899999999977
Q ss_pred hHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHH----HHHHhhCCCccc
Q 029437 77 ARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEE----ELRYHLGLSNFT 152 (193)
Q Consensus 77 ~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~----~~~~~~~~~~~~ 152 (193)
+........+.+|++++|+|+.+....+.... +. +... .+.|+++++||+|+......+ ++.+.+.....
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~-~~-~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~- 154 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAEC-LV-IGEI---LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLE- 154 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHH-HH-HHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHH-
Confidence 65444445577899999999987533222211 11 1111 267999999999997433222 22222211100
Q ss_pred cCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 153 TGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
.......+++++||++|.|+++++++|...+
T Consensus 155 ---------~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~ 185 (192)
T cd01889 155 ---------KTRFKNSPIIPVSAKPGGGEAELGKDLNNLI 185 (192)
T ss_pred ---------hcCcCCCCEEEEeccCCCCHHHHHHHHHhcc
Confidence 0000236789999999999999999998765
No 154
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.90 E-value=4.8e-25 Score=141.39 Aligned_cols=148 Identities=26% Similarity=0.333 Sum_probs=116.8
Q ss_pred EEEcCCCCCHHHHHHHHhcCCccc--cCCCCCcce----eEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEEC
Q 029437 24 LFLGLDNAGKTTLLHMLKDERLVQ--HQPTQYPTS----EELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDA 97 (193)
Q Consensus 24 ~v~G~~~~GKssl~~~l~~~~~~~--~~~t~~~~~----~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~ 97 (193)
+++|++++|||.|+-++..+.|.. ...|+++.. ..+....+++++|||+|++++++....+++.+|++++++|+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 368999999999998887776653 223444432 23344568999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--C---CCHHHHHHhhCCCccccCCCccccCCCCCcceEEEE
Q 029437 98 YDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--A---ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFM 172 (193)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (193)
.+..||++.+.|+.++-+ .....+.+.+++||+|+.+ . .+-+.+.+.+++++ ++
T Consensus 81 ankasfdn~~~wlsei~e-y~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipf--------------------me 139 (192)
T KOG0083|consen 81 ANKASFDNCQAWLSEIHE-YAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPF--------------------ME 139 (192)
T ss_pred ccchhHHHHHHHHHHHHH-HHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCc--------------------ee
Confidence 999999999999998843 3335777889999999962 2 23344666666555 89
Q ss_pred eeeecCCChhhHHHhhhhhc
Q 029437 173 CSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 173 ~Sa~~g~gv~el~~~i~~~~ 192 (193)
+||++|.|++-.|..|.+.+
T Consensus 140 tsaktg~nvd~af~~ia~~l 159 (192)
T KOG0083|consen 140 TSAKTGFNVDLAFLAIAEEL 159 (192)
T ss_pred ccccccccHhHHHHHHHHHH
Confidence 99999999999998887654
No 155
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.90 E-value=8.4e-23 Score=162.93 Aligned_cols=157 Identities=17% Similarity=0.154 Sum_probs=109.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc--cC--CCCCcceeEEEeCCEEEEEEEcCCh----------hhhHhhH-Hh
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQ--HQ--PTQYPTSEELSIGKIKFKAFDLGGH----------QIARRVW-KD 83 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~--~~--~t~~~~~~~~~~~~~~~~~~D~~G~----------~~~~~~~-~~ 83 (193)
..++|+++|.+|+|||||++++++.+... .. .|.+.....+.+++..+.+|||||. +.+..+. ..
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~ 289 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHA 289 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHH
Confidence 45899999999999999999999887532 22 2444555666778888999999995 2233332 23
Q ss_pred hcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCC
Q 029437 84 YYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADS 163 (193)
Q Consensus 84 ~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (193)
.+..+|++++|+|++++.+.+.. .++..+.. .+.|+|+|+||+|+................. .
T Consensus 290 ~i~~ad~vilV~Da~~~~s~~~~-~~~~~~~~----~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l------------~ 352 (472)
T PRK03003 290 AIEAAEVAVVLIDASEPISEQDQ-RVLSMVIE----AGRALVLAFNKWDLVDEDRRYYLEREIDREL------------A 352 (472)
T ss_pred HHhcCCEEEEEEeCCCCCCHHHH-HHHHHHHH----cCCCEEEEEECcccCChhHHHHHHHHHHHhc------------c
Confidence 56899999999999988776554 33444332 4789999999999974322222222221111 0
Q ss_pred CCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 164 NVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 164 ~~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
.....+++++||++|.|++++|+.|.+.+
T Consensus 353 ~~~~~~~~~~SAk~g~gv~~lf~~i~~~~ 381 (472)
T PRK03003 353 QVPWAPRVNISAKTGRAVDKLVPALETAL 381 (472)
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 00235789999999999999999998754
No 156
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.90 E-value=1.2e-22 Score=161.96 Aligned_cols=150 Identities=19% Similarity=0.207 Sum_probs=104.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccccCCC----CCcceeEEEeCCEEEEEEEcCChhh--------hHhhHHhhcc
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPT----QYPTSEELSIGKIKFKAFDLGGHQI--------ARRVWKDYYA 86 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t----~~~~~~~~~~~~~~~~~~D~~G~~~--------~~~~~~~~~~ 86 (193)
...+|+|+|.+|||||||++++.+.......++ .+.......+.+..+.+|||||... +......++.
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 116 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMR 116 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHH
Confidence 447899999999999999999998765433333 3334455566778899999999652 3344556678
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCc
Q 029437 87 KVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVR 166 (193)
Q Consensus 87 ~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (193)
.+|++|+|+|+++..+.. ...+...+.. .++|+++|+||+|+..... +..+.+....
T Consensus 117 ~aD~il~VvD~~~~~s~~--~~~i~~~l~~---~~~piilV~NK~Dl~~~~~--~~~~~~~~g~---------------- 173 (472)
T PRK03003 117 TADAVLFVVDATVGATAT--DEAVARVLRR---SGKPVILAANKVDDERGEA--DAAALWSLGL---------------- 173 (472)
T ss_pred hCCEEEEEEECCCCCCHH--HHHHHHHHHH---cCCCEEEEEECccCCccch--hhHHHHhcCC----------------
Confidence 999999999999875432 1223333332 4799999999999864221 1111111111
Q ss_pred ceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 167 PLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 167 ~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
-..+++||++|.|+++++++|.+.+
T Consensus 174 -~~~~~iSA~~g~gi~eL~~~i~~~l 198 (472)
T PRK03003 174 -GEPHPVSALHGRGVGDLLDAVLAAL 198 (472)
T ss_pred -CCeEEEEcCCCCCcHHHHHHHHhhc
Confidence 1246999999999999999998765
No 157
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.90 E-value=8.5e-23 Score=161.48 Aligned_cols=146 Identities=20% Similarity=0.244 Sum_probs=108.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcc--ccC--CCCCcceeEEEeCCEEEEEEEcCChhhhHhh--------HHhh
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLV--QHQ--PTQYPTSEELSIGKIKFKAFDLGGHQIARRV--------WKDY 84 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~--~~~--~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~--------~~~~ 84 (193)
....++|+++|.+|+|||||+|++++.+.. ... .|.+.....+.+++..+.+|||||....... ....
T Consensus 212 ~~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~ 291 (449)
T PRK05291 212 LREGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREA 291 (449)
T ss_pred hhcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence 346689999999999999999999987642 222 2555566677788899999999997643321 2235
Q ss_pred cccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCC
Q 029437 85 YAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSN 164 (193)
Q Consensus 85 ~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (193)
+..+|++++|+|++++.++... ..+.. ..+.|+++|+||+|+....... ..
T Consensus 292 ~~~aD~il~VvD~s~~~s~~~~-~~l~~------~~~~piiiV~NK~DL~~~~~~~--------~~-------------- 342 (449)
T PRK05291 292 IEEADLVLLVLDASEPLTEEDD-EILEE------LKDKPVIVVLNKADLTGEIDLE--------EE-------------- 342 (449)
T ss_pred HHhCCEEEEEecCCCCCChhHH-HHHHh------cCCCCcEEEEEhhhccccchhh--------hc--------------
Confidence 6889999999999988765543 22222 3578999999999997432211 11
Q ss_pred CcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 165 VRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 165 ~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
...+++++||++|.|+++++++|.+.+
T Consensus 343 -~~~~~i~iSAktg~GI~~L~~~L~~~l 369 (449)
T PRK05291 343 -NGKPVIRISAKTGEGIDELREAIKELA 369 (449)
T ss_pred -cCCceEEEEeeCCCCHHHHHHHHHHHH
Confidence 224679999999999999999998754
No 158
>PRK11058 GTPase HflX; Provisional
Probab=99.90 E-value=2.1e-22 Score=157.70 Aligned_cols=151 Identities=19% Similarity=0.196 Sum_probs=105.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc---cCCCCCcceeEEEeCCE-EEEEEEcCChhh---------hHhhHHhhccc
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDERLVQ---HQPTQYPTSEELSIGKI-KFKAFDLGGHQI---------ARRVWKDYYAK 87 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~-~~~~~D~~G~~~---------~~~~~~~~~~~ 87 (193)
++|+++|.+|||||||+|++++.+... ...|.++....+.+.+. .+.+|||+|..+ +... ...+..
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~t-l~~~~~ 276 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKAT-LQETRQ 276 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHH-HHHhhc
Confidence 589999999999999999999876432 23567777777776654 889999999733 2221 233578
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcc
Q 029437 88 VDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRP 167 (193)
Q Consensus 88 ~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (193)
+|++++|+|++++.+...... +..++......+.|+++|+||+|+..... ..... .. . ..
T Consensus 277 ADlIL~VvDaS~~~~~e~l~~-v~~iL~el~~~~~pvIiV~NKiDL~~~~~-~~~~~-~~--~---------------~~ 336 (426)
T PRK11058 277 ATLLLHVVDAADVRVQENIEA-VNTVLEEIDAHEIPTLLVMNKIDMLDDFE-PRIDR-DE--E---------------NK 336 (426)
T ss_pred CCEEEEEEeCCCccHHHHHHH-HHHHHHHhccCCCCEEEEEEcccCCCchh-HHHHH-Hh--c---------------CC
Confidence 999999999999876655532 22333333335799999999999964311 11110 00 0 00
Q ss_pred eEEEEeeeecCCChhhHHHhhhhhc
Q 029437 168 LEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 168 ~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
..++.+||++|.|+++++++|.+.+
T Consensus 337 ~~~v~ISAktG~GIdeL~e~I~~~l 361 (426)
T PRK11058 337 PIRVWLSAQTGAGIPLLFQALTERL 361 (426)
T ss_pred CceEEEeCCCCCCHHHHHHHHHHHh
Confidence 1247899999999999999998764
No 159
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.90 E-value=1.1e-22 Score=139.80 Aligned_cols=145 Identities=21% Similarity=0.224 Sum_probs=99.5
Q ss_pred EEEcCCCCCHHHHHHHHhcCCcc--ccC--CCCCcceeEEEeCCEEEEEEEcCChhhhHh--------hHHhhcccCCEE
Q 029437 24 LFLGLDNAGKTTLLHMLKDERLV--QHQ--PTQYPTSEELSIGKIKFKAFDLGGHQIARR--------VWKDYYAKVDAV 91 (193)
Q Consensus 24 ~v~G~~~~GKssl~~~l~~~~~~--~~~--~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~--------~~~~~~~~~d~v 91 (193)
+++|.+|+|||||++++.+.... ... .|...........+..+.+|||||...... .....+..+|++
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~i 80 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVI 80 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEE
Confidence 47899999999999999987532 121 233445556667788999999999876433 334456789999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEE
Q 029437 92 VYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVF 171 (193)
Q Consensus 92 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (193)
++|+|+.+..+... ..+...+.. .+.|+++++||+|+...... ...+.. . ...+++
T Consensus 81 i~v~d~~~~~~~~~--~~~~~~~~~---~~~piiiv~nK~D~~~~~~~---~~~~~~-~---------------~~~~~~ 136 (157)
T cd01894 81 LFVVDGREGLTPAD--EEIAKYLRK---SKKPVILVVNKVDNIKEEDE---AAEFYS-L---------------GFGEPI 136 (157)
T ss_pred EEEEeccccCCccH--HHHHHHHHh---cCCCEEEEEECcccCChHHH---HHHHHh-c---------------CCCCeE
Confidence 99999977543322 222233322 36999999999999743221 111110 0 112578
Q ss_pred EeeeecCCChhhHHHhhhhhc
Q 029437 172 MCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 172 ~~Sa~~g~gv~el~~~i~~~~ 192 (193)
++|+++|.|+++++++|.+.+
T Consensus 137 ~~Sa~~~~gv~~l~~~l~~~~ 157 (157)
T cd01894 137 PISAEHGRGIGDLLDAILELL 157 (157)
T ss_pred EEecccCCCHHHHHHHHHhhC
Confidence 999999999999999998764
No 160
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.90 E-value=3.9e-22 Score=142.03 Aligned_cols=145 Identities=23% Similarity=0.222 Sum_probs=99.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc--CCccccC-----------------CCCCcceeEEEeCCEEEEEEEcCChhhhHhhHH
Q 029437 22 KILFLGLDNAGKTTLLHMLKD--ERLVQHQ-----------------PTQYPTSEELSIGKIKFKAFDLGGHQIARRVWK 82 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~--~~~~~~~-----------------~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~ 82 (193)
+|+++|.+|+|||||++++.. ..+.... .+.......+.+++..+.+|||||+..+.....
T Consensus 4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~ 83 (194)
T cd01891 4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEVE 83 (194)
T ss_pred EEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHHH
Confidence 799999999999999999986 3333221 122333445677889999999999999999888
Q ss_pred hhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCH---HHHHHhhC-CCccccCCCcc
Q 029437 83 DYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASE---EELRYHLG-LSNFTTGKGKV 158 (193)
Q Consensus 83 ~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~---~~~~~~~~-~~~~~~~~~~~ 158 (193)
.+++.+|++++|+|+++.. ......++..... .++|+++++||+|+...... +++.+.+. ...
T Consensus 84 ~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-------- 150 (194)
T cd01891 84 RVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGA-------- 150 (194)
T ss_pred HHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH----cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCC--------
Confidence 9999999999999998742 2222333333322 37899999999999643221 12222221 000
Q ss_pred ccCCCCCcceEEEEeeeecCCChh
Q 029437 159 NLADSNVRPLEVFMCSIVRKMGYG 182 (193)
Q Consensus 159 ~~~~~~~~~~~~~~~Sa~~g~gv~ 182 (193)
......++++++||++|.|+.
T Consensus 151 ---~~~~~~~~iv~~Sa~~g~~~~ 171 (194)
T cd01891 151 ---TEEQLDFPVLYASAKNGWASL 171 (194)
T ss_pred ---ccccCccCEEEeehhcccccc
Confidence 000123578999999997763
No 161
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.90 E-value=1.2e-22 Score=139.87 Aligned_cols=139 Identities=19% Similarity=0.197 Sum_probs=93.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCCh-----hhhHhhHHhhcccCCEEEEEEE
Q 029437 22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGH-----QIARRVWKDYYAKVDAVVYLVD 96 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~-----~~~~~~~~~~~~~~d~vl~v~d 96 (193)
+|+++|.+|+|||||++++.+.. ... .....+.+... .+|||||. ..++.+ ...+..+|++++|+|
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~-~~~-----~~~~~v~~~~~--~~iDtpG~~~~~~~~~~~~-~~~~~~ad~il~v~d 73 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNY-TLA-----RKTQAVEFNDK--GDIDTPGEYFSHPRWYHAL-ITTLQDVDMLIYVHG 73 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC-ccC-----ccceEEEECCC--CcccCCccccCCHHHHHHH-HHHHhcCCEEEEEEe
Confidence 79999999999999999987653 111 12223333322 37999997 222232 334689999999999
Q ss_pred CCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeee
Q 029437 97 AYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIV 176 (193)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 176 (193)
+++..++. ..++..+ ..+.|+++++||+|+.. ...+++.+...... ...+++++||+
T Consensus 74 ~~~~~s~~--~~~~~~~-----~~~~~ii~v~nK~Dl~~-~~~~~~~~~~~~~~---------------~~~p~~~~Sa~ 130 (158)
T PRK15467 74 ANDPESRL--PAGLLDI-----GVSKRQIAVISKTDMPD-ADVAATRKLLLETG---------------FEEPIFELNSH 130 (158)
T ss_pred CCCccccc--CHHHHhc-----cCCCCeEEEEEccccCc-ccHHHHHHHHHHcC---------------CCCCEEEEECC
Confidence 99876542 2232222 13679999999999864 33343333222111 12478999999
Q ss_pred cCCChhhHHHhhhhhc
Q 029437 177 RKMGYGDGFKWLSQYI 192 (193)
Q Consensus 177 ~g~gv~el~~~i~~~~ 192 (193)
+|.|++++|++|.+.+
T Consensus 131 ~g~gi~~l~~~l~~~~ 146 (158)
T PRK15467 131 DPQSVQQLVDYLASLT 146 (158)
T ss_pred CccCHHHHHHHHHHhc
Confidence 9999999999998765
No 162
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.90 E-value=3e-22 Score=138.67 Aligned_cols=154 Identities=21% Similarity=0.252 Sum_probs=103.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccccCC----CCCcceeEEEeCCEEEEEEEcCChhhhH--------hhHHhhcc
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQP----TQYPTSEELSIGKIKFKAFDLGGHQIAR--------RVWKDYYA 86 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~G~~~~~--------~~~~~~~~ 86 (193)
...+|+++|++|+|||||++++.+.+.....+ +...........+..+.+|||||..... ......+.
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 35689999999999999999999887543222 1122223334456789999999964332 22334567
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC-CCCHHHHHHhhCCCccccCCCccccCCCCC
Q 029437 87 KVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY-AASEEELRYHLGLSNFTTGKGKVNLADSNV 165 (193)
Q Consensus 87 ~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (193)
.+|++++|+|++++. .....++...+.. .+.|+++++||+|+.. .....+....+....
T Consensus 82 ~~d~i~~v~d~~~~~--~~~~~~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~--------------- 141 (168)
T cd04163 82 DVDLVLFVVDASEPI--GEGDEFILELLKK---SKTPVILVLNKIDLVKDKEDLLPLLEKLKELG--------------- 141 (168)
T ss_pred hCCEEEEEEECCCcc--CchHHHHHHHHHH---hCCCEEEEEEchhccccHHHHHHHHHHHHhcc---------------
Confidence 899999999998872 1222233232222 2689999999999973 333333333333222
Q ss_pred cceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 166 RPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 166 ~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
...+++++|++++.|+++++++|.+.+
T Consensus 142 ~~~~~~~~s~~~~~~~~~l~~~l~~~~ 168 (168)
T cd04163 142 PFAEIFPISALKGENVDELLEEIVKYL 168 (168)
T ss_pred CCCceEEEEeccCCChHHHHHHHHhhC
Confidence 235789999999999999999998753
No 163
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.89 E-value=2e-22 Score=159.67 Aligned_cols=156 Identities=19% Similarity=0.196 Sum_probs=108.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccccC----CCCCcceeEEEeCCEEEEEEEcCChhhhHh----------h-HHh
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQ----PTQYPTSEELSIGKIKFKAFDLGGHQIARR----------V-WKD 83 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~----------~-~~~ 83 (193)
..++|+++|.+|+|||||++++++.+..... .|.......+..++..+.+|||||..+... . ...
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~ 250 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLK 250 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHH
Confidence 4589999999999999999999987643221 233444455666778999999999643221 1 123
Q ss_pred hcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCC-CCCCHHHHHHhhCCCccccCCCccccCC
Q 029437 84 YYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIP-YAASEEELRYHLGLSNFTTGKGKVNLAD 162 (193)
Q Consensus 84 ~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (193)
.++.+|++++|+|++++.+.+.. ..+..... .+.|+++++||+|+. .....+++.+.+....
T Consensus 251 ~~~~ad~~ilV~D~~~~~~~~~~-~~~~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~------------ 313 (429)
T TIGR03594 251 AIERADVVLLVLDATEGITEQDL-RIAGLILE----AGKALVIVVNKWDLVKDEKTREEFKKELRRKL------------ 313 (429)
T ss_pred HHHhCCEEEEEEECCCCccHHHH-HHHHHHHH----cCCcEEEEEECcccCCCHHHHHHHHHHHHHhc------------
Confidence 56889999999999987654433 33333322 378999999999997 2222333433333222
Q ss_pred CCCcceEEEEeeeecCCChhhHHHhhhhh
Q 029437 163 SNVRPLEVFMCSIVRKMGYGDGFKWLSQY 191 (193)
Q Consensus 163 ~~~~~~~~~~~Sa~~g~gv~el~~~i~~~ 191 (193)
.....++++++||++|.|++++|++|.+.
T Consensus 314 ~~~~~~~vi~~SA~~g~~v~~l~~~i~~~ 342 (429)
T TIGR03594 314 PFLDFAPIVFISALTGQGVDKLLDAIDEV 342 (429)
T ss_pred ccCCCCceEEEeCCCCCCHHHHHHHHHHH
Confidence 01134689999999999999999998764
No 164
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.89 E-value=4.5e-22 Score=156.65 Aligned_cols=148 Identities=22% Similarity=0.215 Sum_probs=105.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcc--ccCC--CCCcceeEEEeCCEEEEEEEcCChhhhHhh--------HHhh
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLV--QHQP--TQYPTSEELSIGKIKFKAFDLGGHQIARRV--------WKDY 84 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~--------~~~~ 84 (193)
....++|+++|+||+|||||+|++++.+.. ...| |.+.....+.+++..+.+|||||....... ...+
T Consensus 200 ~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~ 279 (442)
T TIGR00450 200 LDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKA 279 (442)
T ss_pred hhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence 457799999999999999999999987643 2222 334445667788899999999998543321 2356
Q ss_pred cccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCC
Q 029437 85 YAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSN 164 (193)
Q Consensus 85 ~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (193)
++.+|++++|+|++++.+.... ++.... ..+.|+++|+||+|+... ...++.+.
T Consensus 280 ~~~aD~il~V~D~s~~~s~~~~--~l~~~~----~~~~piIlV~NK~Dl~~~-~~~~~~~~------------------- 333 (442)
T TIGR00450 280 IKQADLVIYVLDASQPLTKDDF--LIIDLN----KSKKPFILVLNKIDLKIN-SLEFFVSS------------------- 333 (442)
T ss_pred HhhCCEEEEEEECCCCCChhHH--HHHHHh----hCCCCEEEEEECccCCCc-chhhhhhh-------------------
Confidence 7899999999999988766543 444432 247899999999999643 22111111
Q ss_pred CcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 165 VRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 165 ~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
...+++.+||++ .|++++++.|.+.+
T Consensus 334 -~~~~~~~vSak~-~gI~~~~~~L~~~i 359 (442)
T TIGR00450 334 -KVLNSSNLSAKQ-LKIKALVDLLTQKI 359 (442)
T ss_pred -cCCceEEEEEec-CCHHHHHHHHHHHH
Confidence 113568999998 58988888887654
No 165
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.89 E-value=2.5e-22 Score=142.26 Aligned_cols=162 Identities=20% Similarity=0.185 Sum_probs=112.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcc---------------------ccCCCCCcceeEEE--eCCEEEEEEEcCChh
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDERLV---------------------QHQPTQYPTSEELS--IGKIKFKAFDLGGHQ 75 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~---------------------~~~~t~~~~~~~~~--~~~~~~~~~D~~G~~ 75 (193)
+..+|+++|+.++|||||+.+|....-. ....|.......+. .....++++|+||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 4578999999999999999999744311 12235556666777 788999999999999
Q ss_pred hhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCC
Q 029437 76 IARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGK 155 (193)
Q Consensus 76 ~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 155 (193)
.+.......+..+|++++|+|+.+.-. ....+.+..... .++|+++++||+|+. .....+..+++...+.+...
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~-~~~~~~l~~~~~----~~~p~ivvlNK~D~~-~~~~~~~~~~~~~~l~~~~~ 155 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQ-PQTEEHLKILRE----LGIPIIVVLNKMDLI-EKELEEIIEEIKEKLLKEYG 155 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBST-HHHHHHHHHHHH----TT-SEEEEEETCTSS-HHHHHHHHHHHHHHHHHHTT
T ss_pred ceeecccceecccccceeeeecccccc-cccccccccccc----cccceEEeeeeccch-hhhHHHHHHHHHHHhccccc
Confidence 998888888899999999999987633 233334444433 488999999999997 21222222222211110000
Q ss_pred CccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 156 GKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
.. ....++++++||.+|.|+++|++.|.+.+
T Consensus 156 ~~------~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 156 EN------GEEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp ST------TTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred cC------ccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 00 00247999999999999999999998875
No 166
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.89 E-value=1.1e-21 Score=136.76 Aligned_cols=155 Identities=16% Similarity=0.195 Sum_probs=103.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc--cCC--CCCcceeEEEeCCEEEEEEEcCChhhh----------Hhh-HHhh
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKDERLVQ--HQP--TQYPTSEELSIGKIKFKAFDLGGHQIA----------RRV-WKDY 84 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~~~~~~--~~~--t~~~~~~~~~~~~~~~~~~D~~G~~~~----------~~~-~~~~ 84 (193)
.++|+++|++|+|||||++++.+..... ..+ +.......+..++..+.+|||||.... ... ....
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~ 81 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKA 81 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHH
Confidence 4789999999999999999998876432 112 223334455667778999999996332 111 1234
Q ss_pred cccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC--CCHHHHHHhhCCCccccCCCccccCC
Q 029437 85 YAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA--ASEEELRYHLGLSNFTTGKGKVNLAD 162 (193)
Q Consensus 85 ~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (193)
+..+|++++|+|+.++.+.... ..+..... .+.|+++++||+|+... ...+++........
T Consensus 82 ~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~----~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~------------ 144 (174)
T cd01895 82 IERADVVLLVIDATEGITEQDL-RIAGLILE----EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKL------------ 144 (174)
T ss_pred HhhcCeEEEEEeCCCCcchhHH-HHHHHHHh----cCCCEEEEEeccccCCccHHHHHHHHHHHHhhc------------
Confidence 5789999999999887654332 23333222 36899999999999754 23333333332221
Q ss_pred CCCcceEEEEeeeecCCChhhHHHhhhhh
Q 029437 163 SNVRPLEVFMCSIVRKMGYGDGFKWLSQY 191 (193)
Q Consensus 163 ~~~~~~~~~~~Sa~~g~gv~el~~~i~~~ 191 (193)
......+++++||++|.|++++++++.+.
T Consensus 145 ~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 145 PFLDYAPIVFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred ccccCCceEEEeccCCCCHHHHHHHHHHh
Confidence 00123579999999999999999998763
No 167
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.89 E-value=3.3e-22 Score=144.96 Aligned_cols=172 Identities=26% Similarity=0.259 Sum_probs=117.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccccC-CCCCcceeEE-Ee-C--CEEEEEEEcCChhhhHhhHHhhcccCCEEEE
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQ-PTQYPTSEEL-SI-G--KIKFKAFDLGGHQIARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~-~t~~~~~~~~-~~-~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~ 93 (193)
..++|+++|++|||||||++++.+..+.... +|........ .. . ..++.+|||+|++.++.++..++..++++++
T Consensus 4 ~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~ 83 (219)
T COG1100 4 KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILI 83 (219)
T ss_pred ceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEE
Confidence 3489999999999999999999999988633 4444322221 11 1 5789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHH-HHHHhhC-CCccccCCCccccCCCCCcceEEE
Q 029437 94 LVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEE-ELRYHLG-LSNFTTGKGKVNLADSNVRPLEVF 171 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 171 (193)
|+|..+..++.+..+.|...+......+.|+++++||+|+....... .+...+. ............ .... ....++
T Consensus 84 ~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~ 161 (219)
T COG1100 84 VYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAV-LPEV-ANPALL 161 (219)
T ss_pred EEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHh-hhhh-ccccee
Confidence 99999965555555555544444333579999999999998543322 2333221 111000000000 0000 122389
Q ss_pred Eeeee--cCCChhhHHHhhhhhc
Q 029437 172 MCSIV--RKMGYGDGFKWLSQYI 192 (193)
Q Consensus 172 ~~Sa~--~g~gv~el~~~i~~~~ 192 (193)
+||++ ++.+++++|..+...+
T Consensus 162 ~~s~~~~~~~~v~~~~~~~~~~~ 184 (219)
T COG1100 162 ETSAKSLTGPNVNELFKELLRKL 184 (219)
T ss_pred EeecccCCCcCHHHHHHHHHHHH
Confidence 99999 9999999998877654
No 168
>PLN00023 GTP-binding protein; Provisional
Probab=99.89 E-value=3.5e-22 Score=149.19 Aligned_cols=119 Identities=19% Similarity=0.345 Sum_probs=98.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEe---------------CCEEEEEEEcCChhhhH
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSI---------------GKIKFKAFDLGGHQIAR 78 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~---------------~~~~~~~~D~~G~~~~~ 78 (193)
....+||+++|+.|||||||++++.+..|.. ..+|++... ..+.+ ..+.+.+|||+|++.++
T Consensus 18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfr 97 (334)
T PLN00023 18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYK 97 (334)
T ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhh
Confidence 4577999999999999999999999988765 456776543 33333 23679999999999999
Q ss_pred hhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCC-----------CCCCcEEEEEeCCCCCC
Q 029437 79 RVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEA-----------LANVPFLVLGNKIDIPY 135 (193)
Q Consensus 79 ~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~-----------~~~~pviiv~nK~D~~~ 135 (193)
.++..++++++++|+|+|++++.+++++..|+..+..... ..++|+++|+||+|+..
T Consensus 98 sL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~ 165 (334)
T PLN00023 98 DCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAP 165 (334)
T ss_pred hhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccc
Confidence 9999999999999999999999999999999988865321 13589999999999963
No 169
>COG1159 Era GTPase [General function prediction only]
Probab=99.89 E-value=5.2e-22 Score=144.67 Aligned_cols=155 Identities=19% Similarity=0.212 Sum_probs=112.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccccCC----CCCcceeEEEeCCEEEEEEEcCChhh--------hHhhHHhhcc
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQP----TQYPTSEELSIGKIKFKAFDLGGHQI--------ARRVWKDYYA 86 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~G~~~--------~~~~~~~~~~ 86 (193)
+.--++++|.||+|||||+|++.+.+.+-..+ |...-.+-+..++..+.++||||... +.......+.
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~ 84 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSALK 84 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhc
Confidence 33469999999999999999999998765433 44444555666788999999999432 2233345568
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC-HHHHHHhhCCCccccCCCccccCCCCC
Q 029437 87 KVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAAS-EEELRYHLGLSNFTTGKGKVNLADSNV 165 (193)
Q Consensus 87 ~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (193)
.+|++++|+|+.++-. .-+++..+.+.. .+.|+++++||+|...... ...+.+.+....
T Consensus 85 dvDlilfvvd~~~~~~--~~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~--------------- 144 (298)
T COG1159 85 DVDLILFVVDADEGWG--PGDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLL--------------- 144 (298)
T ss_pred cCcEEEEEEeccccCC--ccHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhhC---------------
Confidence 9999999999987532 233444444332 4789999999999985544 334444444333
Q ss_pred cceEEEEeeeecCCChhhHHHhhhhhcC
Q 029437 166 RPLEVFMCSIVRKMGYGDGFKWLSQYIK 193 (193)
Q Consensus 166 ~~~~~~~~Sa~~g~gv~el~~~i~~~~~ 193 (193)
....++++||++|.|++.|.+.|..++.
T Consensus 145 ~f~~ivpiSA~~g~n~~~L~~~i~~~Lp 172 (298)
T COG1159 145 PFKEIVPISALKGDNVDTLLEIIKEYLP 172 (298)
T ss_pred CcceEEEeeccccCCHHHHHHHHHHhCC
Confidence 4458999999999999999999988763
No 170
>PRK00089 era GTPase Era; Reviewed
Probab=99.89 E-value=6.4e-22 Score=149.29 Aligned_cols=152 Identities=19% Similarity=0.209 Sum_probs=102.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccccCCCC---Ccce-eEEEeCCEEEEEEEcCChhhh--------HhhHHhhcccC
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDERLVQHQPTQ---YPTS-EELSIGKIKFKAFDLGGHQIA--------RRVWKDYYAKV 88 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~---~~~~-~~~~~~~~~~~~~D~~G~~~~--------~~~~~~~~~~~ 88 (193)
-.|+++|+||||||||+|++++.+.....+.. .... .....++..+.++||||.... .......+..+
T Consensus 6 g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~ 85 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDV 85 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHhcC
Confidence 46999999999999999999988765433222 2222 222335579999999996432 22233456789
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC-CCHHHHHHhhCCCccccCCCccccCCCCCcc
Q 029437 89 DAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA-ASEEELRYHLGLSNFTTGKGKVNLADSNVRP 167 (193)
Q Consensus 89 d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (193)
|++++|+|+++. +.....++...+. ..+.|+++++||+|+... ....+..+.+.... ..
T Consensus 86 D~il~vvd~~~~--~~~~~~~i~~~l~---~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~---------------~~ 145 (292)
T PRK00089 86 DLVLFVVDADEK--IGPGDEFILEKLK---KVKTPVILVLNKIDLVKDKEELLPLLEELSELM---------------DF 145 (292)
T ss_pred CEEEEEEeCCCC--CChhHHHHHHHHh---hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhC---------------CC
Confidence 999999999883 2222233333332 247899999999999732 22222333332211 23
Q ss_pred eEEEEeeeecCCChhhHHHhhhhhc
Q 029437 168 LEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 168 ~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
.+++++||++|.|+++++++|.+.+
T Consensus 146 ~~i~~iSA~~~~gv~~L~~~L~~~l 170 (292)
T PRK00089 146 AEIVPISALKGDNVDELLDVIAKYL 170 (292)
T ss_pred CeEEEecCCCCCCHHHHHHHHHHhC
Confidence 5789999999999999999998765
No 171
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.89 E-value=3.5e-22 Score=143.11 Aligned_cols=159 Identities=18% Similarity=0.094 Sum_probs=99.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCc--cc----cCCCCCcceeEEEe---------------------------------
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDERL--VQ----HQPTQYPTSEELSI--------------------------------- 61 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~~--~~----~~~t~~~~~~~~~~--------------------------------- 61 (193)
++|+++|+.|+|||||+.++.+... .. ...+.......+.+
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 4799999999999999999975521 11 11111111111111
Q ss_pred CCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHH
Q 029437 62 GKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEE 141 (193)
Q Consensus 62 ~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~ 141 (193)
....+.+|||||++.+.......+..+|++++|+|++++.........+..+. .. ...|+++++||+|+.......+
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~-~~--~~~~iiivvNK~Dl~~~~~~~~ 157 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALE-IM--GLKHIIIVQNKIDLVKEEQALE 157 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHH-Hc--CCCcEEEEEEchhccCHHHHHH
Confidence 12679999999999887777777788999999999987421112222222221 11 2357999999999974322222
Q ss_pred HHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 142 LRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
..+.+.... . ......++++++||++|.|+++++++|.+.+
T Consensus 158 ~~~~i~~~~-~---------~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l 198 (203)
T cd01888 158 NYEQIKKFV-K---------GTIAENAPIIPISAQLKYNIDVLLEYIVKKI 198 (203)
T ss_pred HHHHHHHHH-h---------ccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence 111111100 0 0001235789999999999999999998865
No 172
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.89 E-value=5.3e-22 Score=156.58 Aligned_cols=155 Identities=24% Similarity=0.270 Sum_probs=106.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc---cCCCCCcceeEEEeCCEEEEEEEcCChhh----h---HhhHHhhcccCCE
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDERLVQ---HQPTQYPTSEELSIGKIKFKAFDLGGHQI----A---RRVWKDYYAKVDA 90 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~G~~~----~---~~~~~~~~~~~d~ 90 (193)
..|+|+|.||||||||+++|++..... ..+|..++...+.+.+..+.+||+||... . ...+...+..+|+
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhieradv 239 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCAV 239 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcCE
Confidence 579999999999999999999765431 23577888888998889999999999532 1 1122234578999
Q ss_pred EEEEEECCCh----hhHHHHHHHHHHHHcCC----------CCCCCcEEEEEeCCCCCCCCCHHH-HHHhhCCCccccCC
Q 029437 91 VVYLVDAYDK----ERFAESKKELDALLSDE----------ALANVPFLVLGNKIDIPYAASEEE-LRYHLGLSNFTTGK 155 (193)
Q Consensus 91 vl~v~d~~~~----~~~~~~~~~~~~~~~~~----------~~~~~pviiv~nK~D~~~~~~~~~-~~~~~~~~~~~~~~ 155 (193)
+++|+|+++. +.+.....+..++.... ...+.|+++|+||+|++......+ +...+. .
T Consensus 240 Lv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~--~----- 312 (500)
T PRK12296 240 LVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELE--A----- 312 (500)
T ss_pred EEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHH--H-----
Confidence 9999999752 23333333333332111 235789999999999964322221 111111 0
Q ss_pred CccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 156 GKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
..++++++||+++.|+++++++|.+.+
T Consensus 313 ----------~g~~Vf~ISA~tgeGLdEL~~~L~ell 339 (500)
T PRK12296 313 ----------RGWPVFEVSAASREGLRELSFALAELV 339 (500)
T ss_pred ----------cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 124789999999999999999998764
No 173
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.88 E-value=2.5e-21 Score=131.30 Aligned_cols=158 Identities=23% Similarity=0.253 Sum_probs=126.3
Q ss_pred CCCCCccEEEEEcCCCCCHHHHHHHHhcCCcccc-------------CCCCCcceeEEEeCC-EEEEEEEcCChhhhHhh
Q 029437 15 GLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQH-------------QPTQYPTSEELSIGK-IKFKAFDLGGHQIARRV 80 (193)
Q Consensus 15 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-------------~~t~~~~~~~~~~~~-~~~~~~D~~G~~~~~~~ 80 (193)
...+...+|+|+|+.++||||++++++....... ..|+....+.+...+ ..+.+++||||+++..+
T Consensus 5 ~~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm 84 (187)
T COG2229 5 ANKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFM 84 (187)
T ss_pred cccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHH
Confidence 3456788999999999999999999987663211 124444555666554 89999999999999999
Q ss_pred HHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCcccc
Q 029437 81 WKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNL 160 (193)
Q Consensus 81 ~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (193)
+....+.+.+.++++|.+.+..+ +....+..+ .... .+|+++.+||.|+.++.+++++.+.+....
T Consensus 85 ~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~-~~~~--~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~---------- 150 (187)
T COG2229 85 WEILSRGAVGAIVLVDSSRPITF-HAEEIIDFL-TSRN--PIPVVVAINKQDLFDALPPEKIREALKLEL---------- 150 (187)
T ss_pred HHHHhCCcceEEEEEecCCCcch-HHHHHHHHH-hhcc--CCCEEEEeeccccCCCCCHHHHHHHHHhcc----------
Confidence 99999999999999999999877 333443333 3322 299999999999999999999999998774
Q ss_pred CCCCCcceEEEEeeeecCCChhhHHHhhhhh
Q 029437 161 ADSNVRPLEVFMCSIVRKMGYGDGFKWLSQY 191 (193)
Q Consensus 161 ~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~ 191 (193)
...++++.+|.+++|..+.++.+...
T Consensus 151 -----~~~~vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 151 -----LSVPVIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred -----CCCceeeeecccchhHHHHHHHHHhh
Confidence 34789999999999999988877654
No 174
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.88 E-value=2.2e-21 Score=153.75 Aligned_cols=147 Identities=21% Similarity=0.235 Sum_probs=105.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc--c--CCCCCcceeEEEeCCEEEEEEEcCCh--------hhhHhhHHhhcccCC
Q 029437 22 KILFLGLDNAGKTTLLHMLKDERLVQ--H--QPTQYPTSEELSIGKIKFKAFDLGGH--------QIARRVWKDYYAKVD 89 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~~~~~~--~--~~t~~~~~~~~~~~~~~~~~~D~~G~--------~~~~~~~~~~~~~~d 89 (193)
+|+++|.+|+|||||+|++.+..... . ..|.+.....+.+.+..+.+|||||. ..+.......++.+|
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad 80 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEAD 80 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCC
Confidence 48999999999999999999877432 2 22455666777888899999999995 344555566778999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceE
Q 029437 90 AVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLE 169 (193)
Q Consensus 90 ~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
++++|+|+.++.+. ....+..++.. .++|+++++||+|+...... ..+.... ...+
T Consensus 81 ~vl~vvD~~~~~~~--~d~~i~~~l~~---~~~piilVvNK~D~~~~~~~--~~~~~~l-----------------g~~~ 136 (429)
T TIGR03594 81 VILFVVDGREGLTP--EDEEIAKWLRK---SGKPVILVANKIDGKKEDAV--AAEFYSL-----------------GFGE 136 (429)
T ss_pred EEEEEEeCCCCCCH--HHHHHHHHHHH---hCCCEEEEEECccCCccccc--HHHHHhc-----------------CCCC
Confidence 99999999875322 22223333322 37899999999998743221 1111111 1235
Q ss_pred EEEeeeecCCChhhHHHhhhhhc
Q 029437 170 VFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
++++||++|.|++++++++.+.+
T Consensus 137 ~~~vSa~~g~gv~~ll~~i~~~l 159 (429)
T TIGR03594 137 PIPISAEHGRGIGDLLDAILELL 159 (429)
T ss_pred eEEEeCCcCCChHHHHHHHHHhc
Confidence 79999999999999999998765
No 175
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.88 E-value=2.5e-21 Score=157.36 Aligned_cols=149 Identities=20% Similarity=0.212 Sum_probs=106.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC-------cccc-----------CCCCCcceeEEEeC-----CEEEEEEEcCChhhhH
Q 029437 22 KILFLGLDNAGKTTLLHMLKDER-------LVQH-----------QPTQYPTSEELSIG-----KIKFKAFDLGGHQIAR 78 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~~~-------~~~~-----------~~t~~~~~~~~~~~-----~~~~~~~D~~G~~~~~ 78 (193)
+|+++|++++|||||++++.... +... ..|.......+.+. .+.+++|||||+..+.
T Consensus 5 Ni~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF~ 84 (595)
T TIGR01393 5 NFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS 84 (595)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHHH
Confidence 79999999999999999997642 1111 11222222333332 3789999999999999
Q ss_pred hhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCH---HHHHHhhCCCccccCC
Q 029437 79 RVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASE---EELRYHLGLSNFTTGK 155 (193)
Q Consensus 79 ~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~ 155 (193)
.....++..+|++++|+|+++..+.+....++... . .++|+++++||+|+...... +++.+.++...
T Consensus 85 ~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~-~----~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~~~----- 154 (595)
T TIGR01393 85 YEVSRSLAACEGALLLVDAAQGIEAQTLANVYLAL-E----NDLEIIPVINKIDLPSADPERVKKEIEEVIGLDA----- 154 (595)
T ss_pred HHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHH-H----cCCCEEEEEECcCCCccCHHHHHHHHHHHhCCCc-----
Confidence 88888999999999999999875555544443322 2 37899999999998643211 22333333211
Q ss_pred CccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 156 GKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
..++++||++|.|+++++++|.+.+
T Consensus 155 ------------~~vi~vSAktG~GI~~Lle~I~~~l 179 (595)
T TIGR01393 155 ------------SEAILASAKTGIGIEEILEAIVKRV 179 (595)
T ss_pred ------------ceEEEeeccCCCCHHHHHHHHHHhC
Confidence 3579999999999999999998764
No 176
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=9.3e-22 Score=136.17 Aligned_cols=171 Identities=22% Similarity=0.312 Sum_probs=134.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcc---cCCEEEEE
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYA---KVDAVVYL 94 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~---~~d~vl~v 94 (193)
.....++++|+.+||||+|+.+|..+.+....+...++......+.-..+++|.|||.+.+.-..++++ .+-++++|
T Consensus 36 s~~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFV 115 (238)
T KOG0090|consen 36 SKQNAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFV 115 (238)
T ss_pred ccCCcEEEEecCCCCceeeeeehhcCCccCeeeeeccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccceeEEEE
Confidence 334689999999999999999999999888888999999999998888999999999999988887777 78999999
Q ss_pred EECCC-hhhHHHHHHHHHHHHcCC--CCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccc----cC-------------
Q 029437 95 VDAYD-KERFAESKKELDALLSDE--ALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFT----TG------------- 154 (193)
Q Consensus 95 ~d~~~-~~~~~~~~~~~~~~~~~~--~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~----~~------------- 154 (193)
+|+.. ....+...+++..++... .....|+++++||.|+..+.+++-++++++..... ..
T Consensus 116 VDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~~ 195 (238)
T KOG0090|consen 116 VDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIAKD 195 (238)
T ss_pred EeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhcccccccccc
Confidence 99854 334677778887776544 35689999999999999888877776666533221 00
Q ss_pred -------C--CccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 155 -------K--GKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 155 -------~--~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
. ..+.+.+ ..+.+.++|+++| +++++-+||.+++
T Consensus 196 ~tlg~~g~dF~fs~l~~---~~V~F~e~S~~~~-~i~~~~~wi~~~l 238 (238)
T KOG0090|consen 196 FTLGKEGEDFKFSHLED---QKVTFAEASAKTG-EIDQWESWIREAL 238 (238)
T ss_pred ccccccccccchhhccc---ceeEEeecccCcC-ChHHHHHHHHHhC
Confidence 0 0011111 3577899999999 9999999998764
No 177
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.88 E-value=2.2e-21 Score=151.21 Aligned_cols=152 Identities=21% Similarity=0.271 Sum_probs=104.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcc--c-cCCCCCcceeEEEeC-CEEEEEEEcCChhh----h---HhhHHhhcccCCE
Q 029437 22 KILFLGLDNAGKTTLLHMLKDERLV--Q-HQPTQYPTSEELSIG-KIKFKAFDLGGHQI----A---RRVWKDYYAKVDA 90 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~~~~~--~-~~~t~~~~~~~~~~~-~~~~~~~D~~G~~~----~---~~~~~~~~~~~d~ 90 (193)
.|+++|.||||||||++++++.... . ..+|..++...+.+. +..+.+||+||... . ...+...+.++++
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~l 239 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRV 239 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCCE
Confidence 7999999999999999999987632 1 234667777777776 68999999999632 1 1222233567999
Q ss_pred EEEEEECCCh---hhHHHHHHHHHHHHcC-CCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCc
Q 029437 91 VVYLVDAYDK---ERFAESKKELDALLSD-EALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVR 166 (193)
Q Consensus 91 vl~v~d~~~~---~~~~~~~~~~~~~~~~-~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (193)
+++|+|+++. +.++....+..++... ....+.|+++|+||+|+... .+.+ +.+.... .
T Consensus 240 lI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~--~e~l-~~l~~~l---------------~ 301 (424)
T PRK12297 240 IVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA--EENL-EEFKEKL---------------G 301 (424)
T ss_pred EEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC--HHHH-HHHHHHh---------------C
Confidence 9999999764 4455554444444221 12357999999999998422 1111 1111111 1
Q ss_pred ceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 167 PLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 167 ~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
.+++++||+++.|+++++++|.+.+
T Consensus 302 -~~i~~iSA~tgeGI~eL~~~L~~~l 326 (424)
T PRK12297 302 -PKVFPISALTGQGLDELLYAVAELL 326 (424)
T ss_pred -CcEEEEeCCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999998754
No 178
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.88 E-value=2.7e-21 Score=156.58 Aligned_cols=159 Identities=20% Similarity=0.196 Sum_probs=111.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccccC---CCCCcceeEEEeCCE-EEEEEEcCChhhhHhhHHhhcccCCEEEE
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQ---PTQYPTSEELSIGKI-KFKAFDLGGHQIARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~---~t~~~~~~~~~~~~~-~~~~~D~~G~~~~~~~~~~~~~~~d~vl~ 93 (193)
.+..+|+++|++++|||||++++.+..+.... .|.......+.+.+. .+.+|||||+..+..++...+..+|++++
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDiaIL 164 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIVVL 164 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCcEEEEEECCCCcchhhHHHhhhccCCEEEE
Confidence 35579999999999999999999887765432 244444455565444 89999999999999988888899999999
Q ss_pred EEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEe
Q 029437 94 LVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMC 173 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
|+|+++....+ ..+.+... ...++|+++++||+|+... ..+++...+..... ....+....+++++
T Consensus 165 VVda~dgv~~q-T~e~i~~~----~~~~vPiIVviNKiDl~~~-~~e~v~~~L~~~g~--------~~~~~~~~~~~v~i 230 (587)
T TIGR00487 165 VVAADDGVMPQ-TIEAISHA----KAANVPIIVAINKIDKPEA-NPDRVKQELSEYGL--------VPEDWGGDTIFVPV 230 (587)
T ss_pred EEECCCCCCHh-HHHHHHHH----HHcCCCEEEEEECcccccC-CHHHHHHHHHHhhh--------hHHhcCCCceEEEE
Confidence 99998742211 11222222 2247899999999999643 34444444321110 00111123578999
Q ss_pred eeecCCChhhHHHhhhh
Q 029437 174 SIVRKMGYGDGFKWLSQ 190 (193)
Q Consensus 174 Sa~~g~gv~el~~~i~~ 190 (193)
||++|.|+++++++|..
T Consensus 231 SAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 231 SALTGDGIDELLDMILL 247 (587)
T ss_pred ECCCCCChHHHHHhhhh
Confidence 99999999999999854
No 179
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.88 E-value=2e-21 Score=138.47 Aligned_cols=159 Identities=18% Similarity=0.219 Sum_probs=101.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCcceeEE-EeCCEEEEEEEcCCh----------hhhHhhHHhh
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLV-QHQPTQYPTSEEL-SIGKIKFKAFDLGGH----------QIARRVWKDY 84 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~~-~~~~~~~~~~D~~G~----------~~~~~~~~~~ 84 (193)
....++|+++|++|+|||||++++.+.++. ...++.+.+.... ...+..+.+|||||. ..+..+...+
T Consensus 21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 100 (196)
T PRK00454 21 PDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVNDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEY 100 (196)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecCCeEEEeCCCCCCCcCCCchHHHHHHHHHHHH
Confidence 346689999999999999999999987643 3334443222111 111368999999994 3344444444
Q ss_pred cc---cCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccC
Q 029437 85 YA---KVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLA 161 (193)
Q Consensus 85 ~~---~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (193)
+. ..+++++|+|+.++.+... ..+...+.. .+.|+++++||+|+......++..+.+....
T Consensus 101 ~~~~~~~~~~~~v~d~~~~~~~~~--~~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l----------- 164 (196)
T PRK00454 101 LRTRENLKGVVLLIDSRHPLKELD--LQMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVRKAL----------- 164 (196)
T ss_pred HHhCccceEEEEEEecCCCCCHHH--HHHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHHHHH-----------
Confidence 44 3467888999877533221 222222222 3789999999999974433333222221111
Q ss_pred CCCCcceEEEEeeeecCCChhhHHHhhhhhcC
Q 029437 162 DSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK 193 (193)
Q Consensus 162 ~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~~ 193 (193)
.. ....++++||++|.|+++++++|.+.++
T Consensus 165 ~~--~~~~~~~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 165 KF--GDDEVILFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred Hh--cCCceEEEEcCCCCCHHHHHHHHHHHhc
Confidence 00 1256889999999999999999988764
No 180
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.88 E-value=3.3e-21 Score=152.93 Aligned_cols=146 Identities=23% Similarity=0.252 Sum_probs=103.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc--cC--CCCCcceeEEEeCCEEEEEEEcCChhh--------hHhhHHhhcccC
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDERLVQ--HQ--PTQYPTSEELSIGKIKFKAFDLGGHQI--------ARRVWKDYYAKV 88 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~~~~--~~--~t~~~~~~~~~~~~~~~~~~D~~G~~~--------~~~~~~~~~~~~ 88 (193)
++|+++|.+|+|||||++++.+..... .. .|.+.....+.+.+..+.+|||||... +.......+..+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~a 81 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEA 81 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 589999999999999999999877432 22 244556667788889999999999876 233345567899
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcce
Q 029437 89 DAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPL 168 (193)
Q Consensus 89 d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (193)
|++++|+|+.++.+. ....+..++.. .+.|+++++||+|+... .....+...... .
T Consensus 82 d~il~vvd~~~~~~~--~~~~~~~~l~~---~~~piilv~NK~D~~~~--~~~~~~~~~lg~-----------------~ 137 (435)
T PRK00093 82 DVILFVVDGRAGLTP--ADEEIAKILRK---SNKPVILVVNKVDGPDE--EADAYEFYSLGL-----------------G 137 (435)
T ss_pred CEEEEEEECCCCCCH--HHHHHHHHHHH---cCCcEEEEEECccCccc--hhhHHHHHhcCC-----------------C
Confidence 999999999875332 22222233322 27899999999997531 122222222111 2
Q ss_pred EEEEeeeecCCChhhHHHhhhh
Q 029437 169 EVFMCSIVRKMGYGDGFKWLSQ 190 (193)
Q Consensus 169 ~~~~~Sa~~g~gv~el~~~i~~ 190 (193)
.++++||++|.|+++++++|.+
T Consensus 138 ~~~~iSa~~g~gv~~l~~~I~~ 159 (435)
T PRK00093 138 EPYPISAEHGRGIGDLLDAILE 159 (435)
T ss_pred CCEEEEeeCCCCHHHHHHHHHh
Confidence 3689999999999999999976
No 181
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.87 E-value=3.1e-21 Score=147.89 Aligned_cols=148 Identities=22% Similarity=0.236 Sum_probs=112.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc----cCCCCCcceeEEEeCCEEEEEEEcCChhh---------hHhhHHhhccc
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDERLVQ----HQPTQYPTSEELSIGKIKFKAFDLGGHQI---------ARRVWKDYYAK 87 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~D~~G~~~---------~~~~~~~~~~~ 87 (193)
..|+++|.||+|||||+|+|++...+- ...|.+..+...++.+..+.++||+|.+. ........+..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence 679999999999999999999988653 33478888999999999999999999542 22334455679
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcc
Q 029437 88 VDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRP 167 (193)
Q Consensus 88 ~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (193)
+|++|||+|.... .+..++.+..++.. .++|+++|+||+|... ..+...+.+.+.+
T Consensus 84 ADvilfvVD~~~G--it~~D~~ia~~Lr~---~~kpviLvvNK~D~~~--~e~~~~efyslG~----------------- 139 (444)
T COG1160 84 ADVILFVVDGREG--ITPADEEIAKILRR---SKKPVILVVNKIDNLK--AEELAYEFYSLGF----------------- 139 (444)
T ss_pred CCEEEEEEeCCCC--CCHHHHHHHHHHHh---cCCCEEEEEEcccCch--hhhhHHHHHhcCC-----------------
Confidence 9999999999764 23344444444432 4799999999999862 2233444444444
Q ss_pred eEEEEeeeecCCChhhHHHhhhhhc
Q 029437 168 LEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 168 ~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
-+.+.+||.+|.|+.+|++++.+.+
T Consensus 140 g~~~~ISA~Hg~Gi~dLld~v~~~l 164 (444)
T COG1160 140 GEPVPISAEHGRGIGDLLDAVLELL 164 (444)
T ss_pred CCceEeehhhccCHHHHHHHHHhhc
Confidence 3578999999999999999998764
No 182
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.87 E-value=1.5e-21 Score=161.61 Aligned_cols=160 Identities=19% Similarity=0.164 Sum_probs=113.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcccc---CCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEE
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQH---QPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~---~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~ 93 (193)
......|+|+|++++|||||++++....+... ..|.......+.+.+..+++|||||+..|..++...+..+|++++
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaIL 366 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVVL 366 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCEEEE
Confidence 34668999999999999999999987665432 124444455677778899999999999999988888899999999
Q ss_pred EEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEe
Q 029437 94 LVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMC 173 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
|+|+++...- +..+.+... ...++|+|+++||+|+... ..+++..++.... .++..+...++++++
T Consensus 367 VVdAddGv~~-qT~e~i~~a----~~~~vPiIVviNKiDl~~a-~~e~V~~eL~~~~--------~~~e~~g~~vp~vpv 432 (787)
T PRK05306 367 VVAADDGVMP-QTIEAINHA----KAAGVPIIVAINKIDKPGA-NPDRVKQELSEYG--------LVPEEWGGDTIFVPV 432 (787)
T ss_pred EEECCCCCCH-hHHHHHHHH----HhcCCcEEEEEECcccccc-CHHHHHHHHHHhc--------ccHHHhCCCceEEEE
Confidence 9999874221 111222222 2247999999999999643 3444433332110 011111234689999
Q ss_pred eeecCCChhhHHHhhhh
Q 029437 174 SIVRKMGYGDGFKWLSQ 190 (193)
Q Consensus 174 Sa~~g~gv~el~~~i~~ 190 (193)
||++|.|+++++++|..
T Consensus 433 SAktG~GI~eLle~I~~ 449 (787)
T PRK05306 433 SAKTGEGIDELLEAILL 449 (787)
T ss_pred eCCCCCCchHHHHhhhh
Confidence 99999999999999864
No 183
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.87 E-value=3.1e-21 Score=135.72 Aligned_cols=144 Identities=21% Similarity=0.305 Sum_probs=92.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCccee--EEEeCCEEEEEEEcCChh----------hhHhhHHhh
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDERLV-QHQPTQYPTSE--ELSIGKIKFKAFDLGGHQ----------IARRVWKDY 84 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~--~~~~~~~~~~~~D~~G~~----------~~~~~~~~~ 84 (193)
...++|+++|++|+|||||++++.+..+. ...++.+.+.. ....+ ..+.+|||||.. .+..+...+
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 94 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN-DGFRLVDLPGYGYAKVSKEEKEKWQKLIEEY 94 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC-CcEEEEeCCCCccccCChhHHHHHHHHHHHH
Confidence 56789999999999999999999987633 33334433221 22223 378999999942 233333344
Q ss_pred cc---cCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHH----HHHHhhCCCccccCCCc
Q 029437 85 YA---KVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEE----ELRYHLGLSNFTTGKGK 157 (193)
Q Consensus 85 ~~---~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~----~~~~~~~~~~~~~~~~~ 157 (193)
++ .++++++|+|++++-+.... ..+. .+.. .+.|+++++||+|+......+ ++.+.+....
T Consensus 95 l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~-~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~------- 162 (179)
T TIGR03598 95 LEKRENLKGVVLLMDIRHPLKELDL-EMLE-WLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDA------- 162 (179)
T ss_pred HHhChhhcEEEEEecCCCCCCHHHH-HHHH-HHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhcc-------
Confidence 44 46899999999875333222 2222 2222 378999999999997433222 2333332211
Q ss_pred cccCCCCCcceEEEEeeeecCCChh
Q 029437 158 VNLADSNVRPLEVFMCSIVRKMGYG 182 (193)
Q Consensus 158 ~~~~~~~~~~~~~~~~Sa~~g~gv~ 182 (193)
...+++++||++|+|++
T Consensus 163 --------~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 163 --------DDPSVQLFSSLKKTGID 179 (179)
T ss_pred --------CCCceEEEECCCCCCCC
Confidence 23479999999999984
No 184
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.87 E-value=4.8e-22 Score=130.74 Aligned_cols=109 Identities=26% Similarity=0.345 Sum_probs=79.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc---cCCCCCcc----eeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEE
Q 029437 22 KILFLGLDNAGKTTLLHMLKDERLVQ---HQPTQYPT----SEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYL 94 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~----~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v 94 (193)
||+|+|++|||||||++++.+..+.. ..++.... ...+......+.+||++|++.+.......+..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 79999999999999999999988771 11222222 223333445689999999988877666668999999999
Q ss_pred EECCChhhHHHHHHH---HHHHHcCCCCCCCcEEEEEeCCC
Q 029437 95 VDAYDKERFAESKKE---LDALLSDEALANVPFLVLGNKID 132 (193)
Q Consensus 95 ~d~~~~~~~~~~~~~---~~~~~~~~~~~~~pviiv~nK~D 132 (193)
+|++++.+++.+.++ +..+-. ...++|+++++||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~--~~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRK--RDKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHH--HSSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHc--cCCCCCEEEEEeccC
Confidence 999999999887655 333322 234699999999998
No 185
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.87 E-value=4.7e-21 Score=148.58 Aligned_cols=157 Identities=19% Similarity=0.191 Sum_probs=106.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcc-c--cCCCCCcceeEEEeCC-EEEEEEEcCChhhh-------HhhHHhhcccCCE
Q 029437 22 KILFLGLDNAGKTTLLHMLKDERLV-Q--HQPTQYPTSEELSIGK-IKFKAFDLGGHQIA-------RRVWKDYYAKVDA 90 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~~~~~-~--~~~t~~~~~~~~~~~~-~~~~~~D~~G~~~~-------~~~~~~~~~~~d~ 90 (193)
.|+|+|.||||||||+|++++.... . ...|..+....+.+.+ ..+.++||||...- ...+...+..+|+
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radv 240 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRV 240 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCCE
Confidence 6999999999999999999976532 1 2346777777777765 46999999996431 1222235688999
Q ss_pred EEEEEECC---ChhhHHHHHHHHHHHHcC-CCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCc
Q 029437 91 VVYLVDAY---DKERFAESKKELDALLSD-EALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVR 166 (193)
Q Consensus 91 vl~v~d~~---~~~~~~~~~~~~~~~~~~-~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (193)
+++|+|++ +.+.++....+..++... ....+.|+++|+||+|+.......+....+.... ..
T Consensus 241 lL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~--------------~~ 306 (390)
T PRK12298 241 LLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEAL--------------GW 306 (390)
T ss_pred EEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHh--------------CC
Confidence 99999997 344455555555554321 1224789999999999964322222222211111 01
Q ss_pred ceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 167 PLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 167 ~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
...++++||+++.|+++++++|.+.+
T Consensus 307 ~~~Vi~ISA~tg~GIdeLl~~I~~~L 332 (390)
T PRK12298 307 EGPVYLISAASGLGVKELCWDLMTFI 332 (390)
T ss_pred CCCEEEEECCCCcCHHHHHHHHHHHh
Confidence 12578999999999999999998765
No 186
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.87 E-value=3e-21 Score=132.45 Aligned_cols=151 Identities=25% Similarity=0.230 Sum_probs=102.8
Q ss_pred EEcCCCCCHHHHHHHHhcCCccccC----CCCCcceeEEEeC-CEEEEEEEcCChhhhH-------hhHHhhcccCCEEE
Q 029437 25 FLGLDNAGKTTLLHMLKDERLVQHQ----PTQYPTSEELSIG-KIKFKAFDLGGHQIAR-------RVWKDYYAKVDAVV 92 (193)
Q Consensus 25 v~G~~~~GKssl~~~l~~~~~~~~~----~t~~~~~~~~~~~-~~~~~~~D~~G~~~~~-------~~~~~~~~~~d~vl 92 (193)
++|++|+|||||++++.+....... .+........... ...+.+||+||..... ......+..+|+++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il 80 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL 80 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence 5899999999999999987654211 1333333344443 6789999999975543 23345678999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEE
Q 029437 93 YLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFM 172 (193)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (193)
+|+|+.++....... +.... ...+.|+++++||+|+.......+......... ......++++
T Consensus 81 ~v~~~~~~~~~~~~~-~~~~~----~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~ 143 (163)
T cd00880 81 FVVDADLRADEEEEK-LLELL----RERGKPVLLVLNKIDLLPEEEEEELLELRLLIL------------LLLLGLPVIA 143 (163)
T ss_pred EEEeCCCCCCHHHHH-HHHHH----HhcCCeEEEEEEccccCChhhHHHHHHHHHhhc------------ccccCCceEE
Confidence 999999886654443 22222 225899999999999985544443321011000 1114578999
Q ss_pred eeeecCCChhhHHHhhhhhc
Q 029437 173 CSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 173 ~Sa~~g~gv~el~~~i~~~~ 192 (193)
+||+++.|+++++++|.+.+
T Consensus 144 ~sa~~~~~v~~l~~~l~~~~ 163 (163)
T cd00880 144 VSALTGEGIDELREALIEAL 163 (163)
T ss_pred EeeeccCCHHHHHHHHHhhC
Confidence 99999999999999998753
No 187
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.87 E-value=6.5e-21 Score=158.59 Aligned_cols=157 Identities=16% Similarity=0.133 Sum_probs=109.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcc--ccC--CCCCcceeEEEeCCEEEEEEEcCChh----------hhHhhH-Hh
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDERLV--QHQ--PTQYPTSEELSIGKIKFKAFDLGGHQ----------IARRVW-KD 83 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~--~~~--~t~~~~~~~~~~~~~~~~~~D~~G~~----------~~~~~~-~~ 83 (193)
...+|+++|.+|||||||++++++.+.. ... .|.+.....+.+++..+.+|||||.. .+..+. ..
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~ 528 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQA 528 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHH
Confidence 3489999999999999999999988742 222 24555555667788889999999953 122222 23
Q ss_pred hcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCC
Q 029437 84 YYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADS 163 (193)
Q Consensus 84 ~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (193)
.++.+|++++|+|+++..+.+.. .++..+.. .++|+++|+||+|+......+.+...+...+ .
T Consensus 529 ~i~~advvilViDat~~~s~~~~-~i~~~~~~----~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l------------~ 591 (712)
T PRK09518 529 AIERSELALFLFDASQPISEQDL-KVMSMAVD----AGRALVLVFNKWDLMDEFRRQRLERLWKTEF------------D 591 (712)
T ss_pred HhhcCCEEEEEEECCCCCCHHHH-HHHHHHHH----cCCCEEEEEEchhcCChhHHHHHHHHHHHhc------------c
Confidence 46889999999999988665544 34444432 3789999999999975433333333332211 0
Q ss_pred CCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 164 NVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 164 ~~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
.....+++++||++|.|++++++.+.+..
T Consensus 592 ~~~~~~ii~iSAktg~gv~~L~~~i~~~~ 620 (712)
T PRK09518 592 RVTWARRVNLSAKTGWHTNRLAPAMQEAL 620 (712)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 01235678999999999999999987653
No 188
>PTZ00099 rab6; Provisional
Probab=99.86 E-value=1.1e-20 Score=132.17 Aligned_cols=127 Identities=18% Similarity=0.182 Sum_probs=97.7
Q ss_pred cCCCCCccee--EEEe--CCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCc
Q 029437 48 HQPTQYPTSE--ELSI--GKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVP 123 (193)
Q Consensus 48 ~~~t~~~~~~--~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 123 (193)
..||.+.... .+.. ..+.+.+|||+|++++..++..+++++|++|+|+|++++++++.+..|+..+.... ..++|
T Consensus 9 ~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~-~~~~p 87 (176)
T PTZ00099 9 YQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER-GKDVI 87 (176)
T ss_pred CCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCe
Confidence 4567765443 2333 34789999999999999999999999999999999999999999998888886543 35789
Q ss_pred EEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 124 FLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 124 viiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
+++|+||+|+.. ....++....... ....+++|||++|.|++++|++|.+.+
T Consensus 88 iilVgNK~DL~~~~~v~~~e~~~~~~~-----------------~~~~~~e~SAk~g~nV~~lf~~l~~~l 141 (176)
T PTZ00099 88 IALVGNKTDLGDLRKVTYEEGMQKAQE-----------------YNTMFHETSAKAGHNIKVLFKKIAAKL 141 (176)
T ss_pred EEEEEECcccccccCCCHHHHHHHHHH-----------------cCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 999999999963 2333333222110 124679999999999999999998765
No 189
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.86 E-value=1.7e-20 Score=154.23 Aligned_cols=160 Identities=21% Similarity=0.225 Sum_probs=110.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcccc---CCCCCcceeEEEe----CCEEEEEEEcCChhhhHhhHHhhcccCCE
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQH---QPTQYPTSEELSI----GKIKFKAFDLGGHQIARRVWKDYYAKVDA 90 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~---~~t~~~~~~~~~~----~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 90 (193)
.+..+|+|+|++++|||||++++....+... ..|.......+.+ .+..+.+|||||+..|..++...+..+|+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi 321 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI 321 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence 4567999999999999999999987766532 1233333333333 35899999999999999999888999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEE
Q 029437 91 VVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEV 170 (193)
Q Consensus 91 vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (193)
+++|+|+++....+. .+.+..+ ...++|+++++||+|+... ..+++...+..... ++..+...+++
T Consensus 322 aILVVDA~dGv~~QT-~E~I~~~----k~~~iPiIVViNKiDl~~~-~~e~v~~eL~~~~l--------l~e~~g~~vpv 387 (742)
T CHL00189 322 AILIIAADDGVKPQT-IEAINYI----QAANVPIIVAINKIDKANA-NTERIKQQLAKYNL--------IPEKWGGDTPM 387 (742)
T ss_pred EEEEEECcCCCChhh-HHHHHHH----HhcCceEEEEEECCCcccc-CHHHHHHHHHHhcc--------chHhhCCCceE
Confidence 999999987432211 1222222 2247899999999999753 33444443321110 01111134689
Q ss_pred EEeeeecCCChhhHHHhhhhh
Q 029437 171 FMCSIVRKMGYGDGFKWLSQY 191 (193)
Q Consensus 171 ~~~Sa~~g~gv~el~~~i~~~ 191 (193)
+++||++|.|+++++++|...
T Consensus 388 v~VSAktG~GIdeLle~I~~l 408 (742)
T CHL00189 388 IPISASQGTNIDKLLETILLL 408 (742)
T ss_pred EEEECCCCCCHHHHHHhhhhh
Confidence 999999999999999998753
No 190
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.86 E-value=7.8e-21 Score=150.78 Aligned_cols=156 Identities=18% Similarity=0.188 Sum_probs=106.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccccCC----CCCcceeEEEeCCEEEEEEEcCChhh----------hHhh-HHh
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQP----TQYPTSEELSIGKIKFKAFDLGGHQI----------ARRV-WKD 83 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~G~~~----------~~~~-~~~ 83 (193)
..++|+++|.+|+|||||++++++.+.....+ |.......+...+..+.+|||||... +... ...
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~ 251 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLK 251 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHH
Confidence 56999999999999999999999876432222 22233344556778899999999532 1111 123
Q ss_pred hcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCC
Q 029437 84 YYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADS 163 (193)
Q Consensus 84 ~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (193)
.+..+|++++|+|++++.+.+.. ..+..... .+.|+++++||+|+.......++.+.+.... .
T Consensus 252 ~~~~ad~~ilViD~~~~~~~~~~-~i~~~~~~----~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l------------~ 314 (435)
T PRK00093 252 AIERADVVLLVIDATEGITEQDL-RIAGLALE----AGRALVIVVNKWDLVDEKTMEEFKKELRRRL------------P 314 (435)
T ss_pred HHHHCCEEEEEEeCCCCCCHHHH-HHHHHHHH----cCCcEEEEEECccCCCHHHHHHHHHHHHHhc------------c
Confidence 56789999999999987554332 33333322 3789999999999974322333443333222 0
Q ss_pred CCcceEEEEeeeecCCChhhHHHhhhhh
Q 029437 164 NVRPLEVFMCSIVRKMGYGDGFKWLSQY 191 (193)
Q Consensus 164 ~~~~~~~~~~Sa~~g~gv~el~~~i~~~ 191 (193)
.....+++++||++|.|++++++.+.+.
T Consensus 315 ~~~~~~i~~~SA~~~~gv~~l~~~i~~~ 342 (435)
T PRK00093 315 FLDYAPIVFISALTGQGVDKLLEAIDEA 342 (435)
T ss_pred cccCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence 1134689999999999999999988753
No 191
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.86 E-value=6.9e-21 Score=126.37 Aligned_cols=134 Identities=25% Similarity=0.334 Sum_probs=94.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChh----hhHhhHHhhcccCCEEEEEEEC
Q 029437 22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQ----IARRVWKDYYAKVDAVVYLVDA 97 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~----~~~~~~~~~~~~~d~vl~v~d~ 97 (193)
||+++|+.|||||||+++|.+.+. .+.....+.+.+ .++||||.. .+...+......+|.|++|.|+
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~------~~~KTq~i~~~~---~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~da 73 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI------RYKKTQAIEYYD---NTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDA 73 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC------CcCccceeEecc---cEEECChhheeCHHHHHHHHHHHhhCCEEEEEecC
Confidence 899999999999999999998652 222333444443 469999954 3333334445689999999999
Q ss_pred CChhh-HHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCC-CCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeee
Q 029437 98 YDKER-FAESKKELDALLSDEALANVPFLVLGNKIDIP-YAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSI 175 (193)
Q Consensus 98 ~~~~~-~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 175 (193)
+++.+ +.. . + ....+.|+|-|+||+|+. .....+...+.+.... .-.+|++|+
T Consensus 74 t~~~~~~pP--~----f---a~~f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG----------------~~~if~vS~ 128 (143)
T PF10662_consen 74 TEPRSVFPP--G----F---ASMFNKPVIGVITKIDLPSDDANIERAKKWLKNAG----------------VKEIFEVSA 128 (143)
T ss_pred CCCCccCCc--h----h---hcccCCCEEEEEECccCccchhhHHHHHHHHHHcC----------------CCCeEEEEC
Confidence 98743 111 0 1 112368999999999998 3445555555554333 124699999
Q ss_pred ecCCChhhHHHhhh
Q 029437 176 VRKMGYGDGFKWLS 189 (193)
Q Consensus 176 ~~g~gv~el~~~i~ 189 (193)
.+|+|+++|.++|.
T Consensus 129 ~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 129 VTGEGIEELKDYLE 142 (143)
T ss_pred CCCcCHHHHHHHHh
Confidence 99999999999985
No 192
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.86 E-value=2.5e-20 Score=143.29 Aligned_cols=150 Identities=20% Similarity=0.217 Sum_probs=110.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc----cCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhH--------Hhh
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ----HQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVW--------KDY 84 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~--------~~~ 84 (193)
....++++++|.||+|||||+|+|.+.+-.- ...|.+.-.+.+..++++++++||+|...-.... ...
T Consensus 214 lr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~ 293 (454)
T COG0486 214 LREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKA 293 (454)
T ss_pred hhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHH
Confidence 4588999999999999999999999988553 3347888899999999999999999965432211 234
Q ss_pred cccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCC
Q 029437 85 YAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSN 164 (193)
Q Consensus 85 ~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (193)
+..+|.+++|+|++.+.+- .....+. ....++|+++|.||.|+......... ...
T Consensus 294 i~~ADlvL~v~D~~~~~~~-~d~~~~~-----~~~~~~~~i~v~NK~DL~~~~~~~~~--~~~----------------- 348 (454)
T COG0486 294 IEEADLVLFVLDASQPLDK-EDLALIE-----LLPKKKPIIVVLNKADLVSKIELESE--KLA----------------- 348 (454)
T ss_pred HHhCCEEEEEEeCCCCCch-hhHHHHH-----hcccCCCEEEEEechhcccccccchh--hcc-----------------
Confidence 5789999999999886221 1111122 22358999999999999865442222 000
Q ss_pred CcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 165 VRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 165 ~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
...+++.+|+++|+|++++.+.|.+.+
T Consensus 349 -~~~~~i~iSa~t~~Gl~~L~~~i~~~~ 375 (454)
T COG0486 349 -NGDAIISISAKTGEGLDALREAIKQLF 375 (454)
T ss_pred -CCCceEEEEecCccCHHHHHHHHHHHH
Confidence 223678999999999999999987653
No 193
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.86 E-value=1.5e-20 Score=156.52 Aligned_cols=149 Identities=22% Similarity=0.219 Sum_probs=102.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccccCCCC----CcceeEEEeCCEEEEEEEcCChhh--------hHhhHHhhccc
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQ----YPTSEELSIGKIKFKAFDLGGHQI--------ARRVWKDYYAK 87 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~----~~~~~~~~~~~~~~~~~D~~G~~~--------~~~~~~~~~~~ 87 (193)
..+|+++|.+|+|||||+|++++.......++. ........+.+..+.+|||||... +......++..
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ 354 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSL 354 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHh
Confidence 368999999999999999999987654333333 333344556778999999999652 33444556789
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcc
Q 029437 88 VDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRP 167 (193)
Q Consensus 88 ~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (193)
+|++++|+|+.+. +......+...+.. .++|+++|+||+|+.... ....+.+....
T Consensus 355 aD~iL~VvDa~~~--~~~~d~~i~~~Lr~---~~~pvIlV~NK~D~~~~~--~~~~~~~~lg~----------------- 410 (712)
T PRK09518 355 ADAVVFVVDGQVG--LTSTDERIVRMLRR---AGKPVVLAVNKIDDQASE--YDAAEFWKLGL----------------- 410 (712)
T ss_pred CCEEEEEEECCCC--CCHHHHHHHHHHHh---cCCCEEEEEECcccccch--hhHHHHHHcCC-----------------
Confidence 9999999999764 22333333333332 589999999999986321 11222222112
Q ss_pred eEEEEeeeecCCChhhHHHhhhhhc
Q 029437 168 LEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 168 ~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
...+++||++|.|+++++++|.+.+
T Consensus 411 ~~~~~iSA~~g~GI~eLl~~i~~~l 435 (712)
T PRK09518 411 GEPYPISAMHGRGVGDLLDEALDSL 435 (712)
T ss_pred CCeEEEECCCCCCchHHHHHHHHhc
Confidence 1246899999999999999998764
No 194
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.86 E-value=4.2e-20 Score=150.41 Aligned_cols=150 Identities=19% Similarity=0.207 Sum_probs=106.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC--cc----------------ccCCCCCcceeEEEeC-----CEEEEEEEcCChhhh
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDER--LV----------------QHQPTQYPTSEELSIG-----KIKFKAFDLGGHQIA 77 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~--~~----------------~~~~t~~~~~~~~~~~-----~~~~~~~D~~G~~~~ 77 (193)
-+|+++|+.++|||||+.++.... .. ....|.......+.+. ++.+++|||||+..+
T Consensus 8 RNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF 87 (600)
T PRK05433 8 RNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDF 87 (600)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHH
Confidence 389999999999999999997532 10 0112333333444443 588999999999999
Q ss_pred HhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCH---HHHHHhhCCCccccC
Q 029437 78 RRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASE---EELRYHLGLSNFTTG 154 (193)
Q Consensus 78 ~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~---~~~~~~~~~~~~~~~ 154 (193)
...+...+..+|++++|+|+++....+....+. .... .++|+++++||+|+...... +++.+.++..
T Consensus 88 ~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~-~~~~----~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~~----- 157 (600)
T PRK05433 88 SYEVSRSLAACEGALLVVDASQGVEAQTLANVY-LALE----NDLEIIPVLNKIDLPAADPERVKQEIEDVIGID----- 157 (600)
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHH-HHHH----CCCCEEEEEECCCCCcccHHHHHHHHHHHhCCC-----
Confidence 888888899999999999998864444333332 2222 37899999999998643221 2233332221
Q ss_pred CCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 155 KGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
...++++||++|.|+++++++|.+.+
T Consensus 158 ------------~~~vi~iSAktG~GI~~Ll~~I~~~l 183 (600)
T PRK05433 158 ------------ASDAVLVSAKTGIGIEEVLEAIVERI 183 (600)
T ss_pred ------------cceEEEEecCCCCCHHHHHHHHHHhC
Confidence 13589999999999999999998764
No 195
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.86 E-value=7.7e-21 Score=154.40 Aligned_cols=155 Identities=19% Similarity=0.129 Sum_probs=106.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC---ccc---cCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEE
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDER---LVQ---HQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYL 94 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~---~~~---~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v 94 (193)
+.|+++|++++|||||++++++.. +.. ...|.+.....+.+++..+.+||+||++.+...+...+..+|++++|
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILV 80 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLV 80 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEE
Confidence 479999999999999999998643 221 12244444455677778999999999999988888888999999999
Q ss_pred EECCCh---hhHHHHHHHHHHHHcCCCCCCCc-EEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEE
Q 029437 95 VDAYDK---ERFAESKKELDALLSDEALANVP-FLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEV 170 (193)
Q Consensus 95 ~d~~~~---~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (193)
+|+++. ++.+.+ . ++.. .++| +++++||+|+.+....++..++..... .. . .....+++
T Consensus 81 VDa~~G~~~qT~ehl----~-il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l-~~-~-------~~~~~~~i 143 (581)
T TIGR00475 81 VDADEGVMTQTGEHL----A-VLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQIL-NS-Y-------IFLKNAKI 143 (581)
T ss_pred EECCCCCcHHHHHHH----H-HHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHH-HH-h-------CCCCCCcE
Confidence 999873 333222 1 2221 3677 999999999974332222222211100 00 0 00013679
Q ss_pred EEeeeecCCChhhHHHhhhhhc
Q 029437 171 FMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 171 ~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
+++||++|.|+++++++|.+.+
T Consensus 144 i~vSA~tG~GI~eL~~~L~~l~ 165 (581)
T TIGR00475 144 FKTSAKTGQGIGELKKELKNLL 165 (581)
T ss_pred EEEeCCCCCCchhHHHHHHHHH
Confidence 9999999999999999887543
No 196
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.85 E-value=2.8e-22 Score=134.92 Aligned_cols=167 Identities=17% Similarity=0.289 Sum_probs=130.0
Q ss_pred HHHHHHHHHhhCCCCCccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCcc----eeEEEeCCEEEEEEEcCChhhhH
Q 029437 4 LDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQH-QPTQYPT----SEELSIGKIKFKAFDLGGHQIAR 78 (193)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~----~~~~~~~~~~~~~~D~~G~~~~~ 78 (193)
+.||+.-....--++.-++++|+|..++||||++.+++.+-|... ..|++.. ...+...+++..+||++|++.+.
T Consensus 4 ~~~~~~~am~e~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfD 83 (246)
T KOG4252|consen 4 LMFFRGMAMDETDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFD 83 (246)
T ss_pred hhhhccCCCCchhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHH
Confidence 445554444444456789999999999999999999998777653 3344432 23344556788999999999999
Q ss_pred hhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC--CCHHH---HHHhhCCCcccc
Q 029437 79 RVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA--ASEEE---LRYHLGLSNFTT 153 (193)
Q Consensus 79 ~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~--~~~~~---~~~~~~~~~~~~ 153 (193)
.....+++++.+.++||+-+|..||+.+.+|.+.+..+ ..++|.++|-||+|+..+ ....+ +.+.+.
T Consensus 84 aItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e--~~~IPtV~vqNKIDlveds~~~~~evE~lak~l~------ 155 (246)
T KOG4252|consen 84 AITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKE--TERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLH------ 155 (246)
T ss_pred HHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHH--hccCCeEEeeccchhhHhhhcchHHHHHHHHHhh------
Confidence 99999999999999999999999999999999999654 459999999999999832 22222 333333
Q ss_pred CCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 154 GKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
..++.+|+++..|+..+|.+|..++
T Consensus 156 --------------~RlyRtSvked~NV~~vF~YLaeK~ 180 (246)
T KOG4252|consen 156 --------------KRLYRTSVKEDFNVMHVFAYLAEKL 180 (246)
T ss_pred --------------hhhhhhhhhhhhhhHHHHHHHHHHH
Confidence 3457899999999999999987653
No 197
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.85 E-value=2.1e-20 Score=155.42 Aligned_cols=150 Identities=23% Similarity=0.144 Sum_probs=103.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc---cCCCCCcceeEEEeCCEEEEEEEcCChhhhHh----------hHHhh-
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQ---HQPTQYPTSEELSIGKIKFKAFDLGGHQIARR----------VWKDY- 84 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~----------~~~~~- 84 (193)
+.++|+++|+||||||||+|++++..... ...|.......+.+++.++.+|||||..++.. ....+
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l 81 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHH
Confidence 45789999999999999999998875421 22345555666777888999999999876532 11222
Q ss_pred -cccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCC
Q 029437 85 -YAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADS 163 (193)
Q Consensus 85 -~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (193)
...+|++++|+|+++.++. ..++.++.+ .++|+++++||+|+..........+.+....
T Consensus 82 ~~~~aD~vI~VvDat~ler~---l~l~~ql~e----~giPvIvVlNK~Dl~~~~~i~id~~~L~~~L------------- 141 (772)
T PRK09554 82 LSGDADLLINVVDASNLERN---LYLTLQLLE----LGIPCIVALNMLDIAEKQNIRIDIDALSARL------------- 141 (772)
T ss_pred hccCCCEEEEEecCCcchhh---HHHHHHHHH----cCCCEEEEEEchhhhhccCcHHHHHHHHHHh-------------
Confidence 2478999999999886542 223344432 3799999999999863322221112221111
Q ss_pred CCcceEEEEeeeecCCChhhHHHhhhhh
Q 029437 164 NVRPLEVFMCSIVRKMGYGDGFKWLSQY 191 (193)
Q Consensus 164 ~~~~~~~~~~Sa~~g~gv~el~~~i~~~ 191 (193)
.++++++||++|+|++++++.|.+.
T Consensus 142 ---G~pVvpiSA~~g~GIdeL~~~I~~~ 166 (772)
T PRK09554 142 ---GCPVIPLVSTRGRGIEALKLAIDRH 166 (772)
T ss_pred ---CCCEEEEEeecCCCHHHHHHHHHHh
Confidence 2467999999999999999998764
No 198
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.84 E-value=5.2e-20 Score=148.94 Aligned_cols=163 Identities=20% Similarity=0.207 Sum_probs=102.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccccCC---C--CCcceeEEE----------------eCCEEEEEEEcCChhhhH
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKDERLVQHQP---T--QYPTSEELS----------------IGKIKFKAFDLGGHQIAR 78 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~---t--~~~~~~~~~----------------~~~~~~~~~D~~G~~~~~ 78 (193)
...|+++|++++|||||++++.+..+....+ | .+....... +....+.+|||||++.+.
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~ 83 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT 83 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence 3579999999999999999999877653221 1 122111111 111238899999999999
Q ss_pred hhHHhhcccCCEEEEEEECCC---hhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC--------------HHH
Q 029437 79 RVWKDYYAKVDAVVYLVDAYD---KERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAAS--------------EEE 141 (193)
Q Consensus 79 ~~~~~~~~~~d~vl~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~--------------~~~ 141 (193)
.++...+..+|++++|+|+++ ++++..+ ..+ .. .++|+++++||+|+.+... ..+
T Consensus 84 ~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i----~~l-~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~ 155 (590)
T TIGR00491 84 NLRKRGGALADLAILIVDINEGFKPQTQEAL----NIL-RM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQ 155 (590)
T ss_pred HHHHHHHhhCCEEEEEEECCcCCCHhHHHHH----HHH-HH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHH
Confidence 988888899999999999987 3443332 212 11 3789999999999963211 001
Q ss_pred HHHhhCCC-------ccccCCCcccc--CCCCCcceEEEEeeeecCCChhhHHHhhhh
Q 029437 142 LRYHLGLS-------NFTTGKGKVNL--ADSNVRPLEVFMCSIVRKMGYGDGFKWLSQ 190 (193)
Q Consensus 142 ~~~~~~~~-------~~~~~~~~~~~--~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~ 190 (193)
+...+... ........+.. ........+++++||++|+|+++++++|..
T Consensus 156 v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~ 213 (590)
T TIGR00491 156 VQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAG 213 (590)
T ss_pred HHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHH
Confidence 11111000 00000000000 012234578999999999999999998853
No 199
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.84 E-value=2.3e-19 Score=130.89 Aligned_cols=149 Identities=23% Similarity=0.258 Sum_probs=103.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcc-c--cCCCCCcceeEEEeCCEEEEEEEcCChhhhH-------hhHHhhcccCCEE
Q 029437 22 KILFLGLDNAGKTTLLHMLKDERLV-Q--HQPTQYPTSEELSIGKIKFKAFDLGGHQIAR-------RVWKDYYAKVDAV 91 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~~~~~-~--~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~-------~~~~~~~~~~d~v 91 (193)
+++++|++|+|||||++++.+.... . ..+|..+....+.+.+..+++||+||..... ......++.+|++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~i 81 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLI 81 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEE
Confidence 6899999999999999999987532 1 2235566777788889999999999974321 2234567899999
Q ss_pred EEEEECCChh-hHHHHHHHHH----------------------------------------HHHcCC-------------
Q 029437 92 VYLVDAYDKE-RFAESKKELD----------------------------------------ALLSDE------------- 117 (193)
Q Consensus 92 l~v~d~~~~~-~~~~~~~~~~----------------------------------------~~~~~~------------- 117 (193)
++|+|++++. ....+.+.+. .++.+.
T Consensus 82 l~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~ 161 (233)
T cd01896 82 LMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIREDI 161 (233)
T ss_pred EEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccCC
Confidence 9999998764 2333322221 111111
Q ss_pred -----------CCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHH
Q 029437 118 -----------ALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFK 186 (193)
Q Consensus 118 -----------~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~ 186 (193)
+...+|+++++||+|+.. .++... +. ....++++||++|.|++++++
T Consensus 162 ~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~---~~~~~~-~~------------------~~~~~~~~SA~~g~gi~~l~~ 219 (233)
T cd01896 162 TVDDLIDVIEGNRVYIPCLYVYNKIDLIS---IEELDL-LA------------------RQPNSVVISAEKGLNLDELKE 219 (233)
T ss_pred CHHHHHHHHhCCceEeeEEEEEECccCCC---HHHHHH-Hh------------------cCCCEEEEcCCCCCCHHHHHH
Confidence 112479999999999863 333331 11 112478999999999999999
Q ss_pred hhhhhc
Q 029437 187 WLSQYI 192 (193)
Q Consensus 187 ~i~~~~ 192 (193)
.|.+.+
T Consensus 220 ~i~~~L 225 (233)
T cd01896 220 RIWDKL 225 (233)
T ss_pred HHHHHh
Confidence 998765
No 200
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.84 E-value=1.9e-19 Score=124.71 Aligned_cols=155 Identities=20% Similarity=0.277 Sum_probs=110.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC-ccccCCCCCcceeEEEeCCE-EEEEEEcCC----------hhhhHhhHHhhcc
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDER-LVQHQPTQYPTSEELSIGKI-KFKAFDLGG----------HQIARRVWKDYYA 86 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~~~~~~~~~-~~~~~D~~G----------~~~~~~~~~~~~~ 86 (193)
....|+++|.+|+|||||+|++++.. .+....|+|.+..-..+.-. .+.++|.|| .+.+..+..++++
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~ 102 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDELRLVDLPGYGYAKVPKEVKEKWKKLIEEYLE 102 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCcEEEEeCCCcccccCCHHHHHHHHHHHHHHHh
Confidence 45689999999999999999999966 57777777776544443322 388999999 3344555555554
Q ss_pred ---cCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCH----HHHHHhhCCCccccCCCccc
Q 029437 87 ---KVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASE----EELRYHLGLSNFTTGKGKVN 159 (193)
Q Consensus 87 ---~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 159 (193)
+..++++++|+..+- ...+..+.+++.. .++|+++++||+|....... ..+.+.+.....
T Consensus 103 ~R~~L~~vvlliD~r~~~--~~~D~em~~~l~~---~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~-------- 169 (200)
T COG0218 103 KRANLKGVVLLIDARHPP--KDLDREMIEFLLE---LGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPP-------- 169 (200)
T ss_pred hchhheEEEEEEECCCCC--cHHHHHHHHHHHH---cCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCC--------
Confidence 467889999997763 3333444444333 59999999999999865444 335555554440
Q ss_pred cCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 160 LADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 160 ~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
....++..|+.++.|++++.+.|...+
T Consensus 170 ------~~~~~~~~ss~~k~Gi~~l~~~i~~~~ 196 (200)
T COG0218 170 ------DDQWVVLFSSLKKKGIDELKAKILEWL 196 (200)
T ss_pred ------ccceEEEEecccccCHHHHHHHHHHHh
Confidence 112288899999999999999998765
No 201
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.84 E-value=1.2e-19 Score=139.23 Aligned_cols=156 Identities=19% Similarity=0.203 Sum_probs=116.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc----cCCCCCcceeEEEeCCEEEEEEEcCChhhhHh----------hH-Hh
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQ----HQPTQYPTSEELSIGKIKFKAFDLGGHQIARR----------VW-KD 83 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~----------~~-~~ 83 (193)
..++|+|+|.||+|||||+|++++.+-.- ...|.+.....+++++..+.++||+|..+-.. .. ..
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~ 256 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLK 256 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHh
Confidence 46999999999999999999999887443 33477777888889999999999999543211 11 22
Q ss_pred hcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC--CCHHHHHHhhCCCccccCCCccccC
Q 029437 84 YYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA--ASEEELRYHLGLSNFTTGKGKVNLA 161 (193)
Q Consensus 84 ~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (193)
.+..+|.+++|+|++.+-+- +..+....+.+ .+.++++++||-|+... ...++..+++...+
T Consensus 257 aI~~a~vvllviDa~~~~~~-qD~~ia~~i~~----~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l----------- 320 (444)
T COG1160 257 AIERADVVLLVIDATEGISE-QDLRIAGLIEE----AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKL----------- 320 (444)
T ss_pred HHhhcCEEEEEEECCCCchH-HHHHHHHHHHH----cCCCeEEEEEccccCCchhhHHHHHHHHHHHHh-----------
Confidence 35689999999999887542 22233333333 48899999999999854 45555655555444
Q ss_pred CCCCcceEEEEeeeecCCChhhHHHhhhhh
Q 029437 162 DSNVRPLEVFMCSIVRKMGYGDGFKWLSQY 191 (193)
Q Consensus 162 ~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~ 191 (193)
......+++.+||++|.|+.++|+++.+.
T Consensus 321 -~~l~~a~i~~iSA~~~~~i~~l~~~i~~~ 349 (444)
T COG1160 321 -PFLDFAPIVFISALTGQGLDKLFEAIKEI 349 (444)
T ss_pred -ccccCCeEEEEEecCCCChHHHHHHHHHH
Confidence 23356789999999999999999998764
No 202
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.84 E-value=7.4e-20 Score=144.59 Aligned_cols=153 Identities=19% Similarity=0.104 Sum_probs=99.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcc----------------------------------ccCCCCCcceeEEEeC
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLV----------------------------------QHQPTQYPTSEELSIG 62 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~----------------------------------~~~~t~~~~~~~~~~~ 62 (193)
.+.+++|+++|++++|||||+++|+...-. ....|.+.....+..+
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 356799999999999999999999732100 1223556666677788
Q ss_pred CEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC--HH
Q 029437 63 KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAAS--EE 140 (193)
Q Consensus 63 ~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~--~~ 140 (193)
+..+.+|||||++.+.......+..+|++++|+|++++.+.......+..+.... ...|+++++||+|+..... ..
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~--~~~~iivviNK~Dl~~~~~~~~~ 160 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL--GINQLIVAINKMDAVNYDEKRYE 160 (425)
T ss_pred CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc--CCCeEEEEEEccccccccHHHHH
Confidence 8999999999998876655556688999999999987311211111122222221 1346999999999974211 11
Q ss_pred ----HHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhh
Q 029437 141 ----ELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGD 183 (193)
Q Consensus 141 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e 183 (193)
++.+.+.... . .....+++++||++|.|+++
T Consensus 161 ~~~~~i~~~l~~~g----~--------~~~~~~ii~iSA~~g~gi~~ 195 (425)
T PRK12317 161 EVKEEVSKLLKMVG----Y--------KPDDIPFIPVSAFEGDNVVK 195 (425)
T ss_pred HHHHHHHHHHHhhC----C--------CcCcceEEEeecccCCCccc
Confidence 2222221111 0 00236799999999999987
No 203
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.83 E-value=2.7e-19 Score=128.62 Aligned_cols=148 Identities=20% Similarity=0.099 Sum_probs=93.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc----------------------------------cCCCCCcceeEEEeCCEEEE
Q 029437 22 KILFLGLDNAGKTTLLHMLKDERLVQ----------------------------------HQPTQYPTSEELSIGKIKFK 67 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~~~~~~----------------------------------~~~t~~~~~~~~~~~~~~~~ 67 (193)
||+++|++|+|||||+++|+...-.. ...|.+.....+.+.+..+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 58999999999999999996432110 12244445556677788999
Q ss_pred EEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC--HHHHHHh
Q 029437 68 AFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAAS--EEELRYH 145 (193)
Q Consensus 68 ~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~--~~~~~~~ 145 (193)
+|||||+..+.......+..+|++++|+|++++.. ......+ .+.... ...++|+++||+|+..... ..++...
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~-~~~~~~~-~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~i~~~ 156 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVL-EQTRRHS-YILSLL--GIRHVVVAVNKMDLVDYSEEVFEEIVAD 156 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCcc-HhHHHHH-HHHHHc--CCCcEEEEEEchhcccCCHHHHHHHHHH
Confidence 99999998876656667789999999999987532 1111211 222221 1245788999999974321 1122222
Q ss_pred hCCCccccCCCccccCCCCCcceEEEEeeeecCCChhh
Q 029437 146 LGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGD 183 (193)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e 183 (193)
+..... .......+++++||++|.|+.+
T Consensus 157 ~~~~~~----------~~~~~~~~ii~iSA~~g~ni~~ 184 (208)
T cd04166 157 YLAFAA----------KLGIEDITFIPISALDGDNVVS 184 (208)
T ss_pred HHHHHH----------HcCCCCceEEEEeCCCCCCCcc
Confidence 211000 0000225689999999999975
No 204
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.83 E-value=3.2e-19 Score=129.14 Aligned_cols=164 Identities=23% Similarity=0.180 Sum_probs=101.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcccc-----------------CCCC-------Ccc-----------------eeEEE
Q 029437 22 KILFLGLDNAGKTTLLHMLKDERLVQH-----------------QPTQ-------YPT-----------------SEELS 60 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~~~~~~~-----------------~~t~-------~~~-----------------~~~~~ 60 (193)
||+++|+.++|||||++++....+... ..|. +.. .+.++
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 589999999999999999986554320 0010 000 12344
Q ss_pred eCCEEEEEEEcCChhhhHhhHHhhcc--cCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC
Q 029437 61 IGKIKFKAFDLGGHQIARRVWKDYYA--KVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAAS 138 (193)
Q Consensus 61 ~~~~~~~~~D~~G~~~~~~~~~~~~~--~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~ 138 (193)
..+..+.++||||+..+.......+. .+|++++|+|+..+.. ....+.+..+.. .++|+++++||+|+.....
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~----~~ip~ivvvNK~D~~~~~~ 155 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALA----LNIPVFVVVTKIDLAPANI 155 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCEEEEEECccccCHHH
Confidence 55678999999999988665544443 6899999999976532 222233333322 3789999999999874333
Q ss_pred HHH----HHHhhCCCcccc-----CCCccc----cCCCCCcceEEEEeeeecCCChhhHHHhhhh
Q 029437 139 EEE----LRYHLGLSNFTT-----GKGKVN----LADSNVRPLEVFMCSIVRKMGYGDGFKWLSQ 190 (193)
Q Consensus 139 ~~~----~~~~~~~~~~~~-----~~~~~~----~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~ 190 (193)
..+ +.+.+....... ....+. ........+++|.+||.+|.|++++++.|..
T Consensus 156 ~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 156 LQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred HHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 333 333333211110 000000 0011224568999999999999999998853
No 205
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.83 E-value=1e-19 Score=142.65 Aligned_cols=162 Identities=17% Similarity=0.109 Sum_probs=102.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc------cCCCCCcc-------------------eeEE-Ee------CCEE
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQ------HQPTQYPT-------------------SEEL-SI------GKIK 65 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~------~~~t~~~~-------------------~~~~-~~------~~~~ 65 (193)
+.+++|+++|++++|||||+++|.+..... ...|.... .... .. ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 567899999999999999999997542211 00111110 0000 01 2467
Q ss_pred EEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHh
Q 029437 66 FKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYH 145 (193)
Q Consensus 66 ~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~ 145 (193)
+.+||+||++.+...+......+|++++|+|++++....+..+.+..+ ... ...|+++++||+|+.......+..++
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~~--gi~~iIVvvNK~Dl~~~~~~~~~~~~ 158 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMAL-EII--GIKNIVIVQNKIDLVSKEKALENYEE 158 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHH-HHc--CCCeEEEEEEccccCCHHHHHHHHHH
Confidence 999999999999887777778899999999998643111222222222 211 23578999999999743222121122
Q ss_pred hCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 146 LGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
+.... . ......++++++||++|.|+++++++|...+
T Consensus 159 i~~~l-~---------~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l 195 (406)
T TIGR03680 159 IKEFV-K---------GTVAENAPIIPVSALHNANIDALLEAIEKFI 195 (406)
T ss_pred HHhhh-h---------hcccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence 21111 0 0001246799999999999999999998753
No 206
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.83 E-value=2.2e-19 Score=130.10 Aligned_cols=150 Identities=19% Similarity=0.119 Sum_probs=96.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC---------------------------cc-------ccCCCCCcceeEEEeCCEEEE
Q 029437 22 KILFLGLDNAGKTTLLHMLKDER---------------------------LV-------QHQPTQYPTSEELSIGKIKFK 67 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~~~---------------------------~~-------~~~~t~~~~~~~~~~~~~~~~ 67 (193)
+|+++|++++|||||+.+|+... +. ....|.+.....+.+.+.++.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 58999999999999999984211 00 112244556667788899999
Q ss_pred EEEcCChhhhHhhHHhhcccCCEEEEEEECCChhh------HHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCC-C--
Q 029437 68 AFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKER------FAESKKELDALLSDEALANVPFLVLGNKIDIPYAA-S-- 138 (193)
Q Consensus 68 ~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~------~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~-~-- 138 (193)
+|||||+..+.......++.+|++++|+|+++... ..+....+... .. ....|+++++||+|+.... .
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~iiivvNK~Dl~~~~~~~~ 157 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-RT--LGVKQLIVAVNKMDDVTVNWSEE 157 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHH-HH--cCCCeEEEEEEccccccccccHH
Confidence 99999998887666667788999999999987421 11122222221 11 1246899999999997421 1
Q ss_pred -HHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChh
Q 029437 139 -EEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYG 182 (193)
Q Consensus 139 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~ 182 (193)
.+++.+.+........ .....++++++||++|.|++
T Consensus 158 ~~~~i~~~l~~~l~~~~--------~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 158 RYDEIKKELSPFLKKVG--------YNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHHHcC--------CCcCCceEEEeecCcCCCCC
Confidence 2233333221110000 00134789999999999986
No 207
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.83 E-value=4.8e-20 Score=145.62 Aligned_cols=156 Identities=17% Similarity=0.072 Sum_probs=99.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCC--cc--------------------------------ccCCCCCcceeEEEeC
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDER--LV--------------------------------QHQPTQYPTSEELSIG 62 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~--~~--------------------------------~~~~t~~~~~~~~~~~ 62 (193)
.+..++|+++|+.++|||||+.+|+... .. ....|.+.....+..+
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 5677899999999999999999997421 10 0122334445556677
Q ss_pred CEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhHH--HHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC--
Q 029437 63 KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFA--ESKKELDALLSDEALANVPFLVLGNKIDIPYAAS-- 138 (193)
Q Consensus 63 ~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~-- 138 (193)
+..+.+|||||++.+.......+..+|++++|+|+++.++.. .....+ .+.... ...|+++++||+|+.....
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~-~~~~~~--~~~~iIVviNK~Dl~~~~~~~ 160 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHA-FLARTL--GINQLIVAINKMDSVNYDEEE 160 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHH-HHHHHc--CCCeEEEEEEChhccCccHHH
Confidence 889999999999988766666678999999999998874321 111111 122211 2357999999999964211
Q ss_pred HHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhh
Q 029437 139 EEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGD 183 (193)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e 183 (193)
.++..++......... .....++++++||++|.|+.+
T Consensus 161 ~~~~~~ei~~~~~~~g--------~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 161 FEAIKKEVSNLIKKVG--------YNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred HHHHHHHHHHHHHHcC--------CCcccceEEEeeccccccccc
Confidence 1112222111110000 000246899999999999986
No 208
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.83 E-value=3.8e-20 Score=150.54 Aligned_cols=142 Identities=23% Similarity=0.181 Sum_probs=96.7
Q ss_pred cCCCCCHHHHHHHHhcCCcc-ccCC--CCCcceeEEEeCCEEEEEEEcCChhhhHhh------HHhhc--ccCCEEEEEE
Q 029437 27 GLDNAGKTTLLHMLKDERLV-QHQP--TQYPTSEELSIGKIKFKAFDLGGHQIARRV------WKDYY--AKVDAVVYLV 95 (193)
Q Consensus 27 G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~------~~~~~--~~~d~vl~v~ 95 (193)
|++|+|||||+|++++..+. .+.| |.+.....+.+++..+++|||||+.++... ...++ ..+|++++|+
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~Vv 80 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVV 80 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEe
Confidence 89999999999999987652 2222 344445566777888999999998765432 23332 3789999999
Q ss_pred ECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeee
Q 029437 96 DAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSI 175 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 175 (193)
|+++.+. ...+..+..+ .+.|+++++||+|+..........+.+.... .++++++||
T Consensus 81 Dat~ler---~l~l~~ql~~----~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~l----------------g~pvv~tSA 137 (591)
T TIGR00437 81 DASNLER---NLYLTLQLLE----LGIPMILALNLVDEAEKKGIRIDEEKLEERL----------------GVPVVPTSA 137 (591)
T ss_pred cCCcchh---hHHHHHHHHh----cCCCEEEEEehhHHHHhCCChhhHHHHHHHc----------------CCCEEEEEC
Confidence 9987543 2233333322 3789999999999863221111111111111 246899999
Q ss_pred ecCCChhhHHHhhhhh
Q 029437 176 VRKMGYGDGFKWLSQY 191 (193)
Q Consensus 176 ~~g~gv~el~~~i~~~ 191 (193)
++|.|+++++++|.+.
T Consensus 138 ~tg~Gi~eL~~~i~~~ 153 (591)
T TIGR00437 138 TEGRGIERLKDAIRKA 153 (591)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 9999999999999765
No 209
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.82 E-value=9.8e-19 Score=124.11 Aligned_cols=149 Identities=17% Similarity=0.120 Sum_probs=95.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCc----------c---------ccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhh
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKDERL----------V---------QHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRV 80 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~~~~----------~---------~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~ 80 (193)
+++|+++|++++|||||+++|+.... . ....|.......+..++..+.++||||+..+...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 57999999999999999999975310 0 1112333334445566788999999999988777
Q ss_pred HHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCc-EEEEEeCCCCCCCCC-HHHHHHhhCCCccccCCCcc
Q 029437 81 WKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVP-FLVLGNKIDIPYAAS-EEELRYHLGLSNFTTGKGKV 158 (193)
Q Consensus 81 ~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~ 158 (193)
....+..+|++++|+|+...-. ....+.+..+.. .++| +|+++||+|+..... .+++.++..........
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~-~~~~~~~~~~~~----~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~--- 153 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPM-PQTREHLLLARQ----VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGF--- 153 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcc---
Confidence 7777889999999999976422 222333333322 3566 789999999963221 11122222211100000
Q ss_pred ccCCCCCcceEEEEeeeecCCCh
Q 029437 159 NLADSNVRPLEVFMCSIVRKMGY 181 (193)
Q Consensus 159 ~~~~~~~~~~~~~~~Sa~~g~gv 181 (193)
....++++++||.+|.|+
T Consensus 154 -----~~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 154 -----DGDNTPIVRGSALKALEG 171 (195)
T ss_pred -----cccCCeEEEeeCccccCC
Confidence 012478999999999985
No 210
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.82 E-value=5e-19 Score=129.25 Aligned_cols=166 Identities=20% Similarity=0.220 Sum_probs=113.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcc---------------------ccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhh
Q 029437 22 KILFLGLDNAGKTTLLHMLKDERLV---------------------QHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRV 80 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~~~~~---------------------~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~ 80 (193)
+|+++|++|+|||||+++++...-. ....+.......+.+.+.++.+|||||+..+...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 5899999999999999999753210 0111333445667788999999999999988888
Q ss_pred HHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCC---CHHHHHHhhCCCccccCC-C
Q 029437 81 WKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAA---SEEELRYHLGLSNFTTGK-G 156 (193)
Q Consensus 81 ~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~---~~~~~~~~~~~~~~~~~~-~ 156 (193)
....++.+|++++|+|+.+.... ....++..... .++|+++++||+|+..+. ..+++.+.++.....-+. .
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~----~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~ 155 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK----LNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVG 155 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH----cCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCc
Confidence 88888999999999999886432 33344444322 378999999999997532 223355555432221000 0
Q ss_pred ---------------ccccCCC----------------------------CCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 157 ---------------KVNLADS----------------------------NVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 157 ---------------~~~~~~~----------------------------~~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
.+.++.. ....++++..||.++.|+..+++.|.+.+
T Consensus 156 ~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~ 234 (237)
T cd04168 156 LAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEGITKLF 234 (237)
T ss_pred EeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHHHHHhc
Confidence 0000000 01357899999999999999999998765
No 211
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.82 E-value=4.4e-19 Score=144.07 Aligned_cols=156 Identities=20% Similarity=0.185 Sum_probs=110.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC--Cccc-----------------cCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHH
Q 029437 22 KILFLGLDNAGKTTLLHMLKDE--RLVQ-----------------HQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWK 82 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~~--~~~~-----------------~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~ 82 (193)
+|+++|+.++|||||+++++.. .+.. ...|.......+.+.+.++++|||||+..+.....
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 7999999999999999999752 2211 12244444566788999999999999999988888
Q ss_pred hhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC---HHHHHHhhCCCccccCCCccc
Q 029437 83 DYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAAS---EEELRYHLGLSNFTTGKGKVN 159 (193)
Q Consensus 83 ~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 159 (193)
..++.+|++++|+|+.+.. ..+...++..... .++|+++++||+|+..+.. .+++.+.+.... ...
T Consensus 83 ~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~----~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g----~~~-- 151 (594)
T TIGR01394 83 RVLGMVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELG----ADD-- 151 (594)
T ss_pred HHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHH----CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhc----ccc--
Confidence 8899999999999997642 2344455555543 3789999999999864322 122333222110 000
Q ss_pred cCCCCCcceEEEEeeeecCC----------ChhhHHHhhhhhc
Q 029437 160 LADSNVRPLEVFMCSIVRKM----------GYGDGFKWLSQYI 192 (193)
Q Consensus 160 ~~~~~~~~~~~~~~Sa~~g~----------gv~el~~~i~~~~ 192 (193)
....++++++||++|. |++.+|+.|.+.+
T Consensus 152 ----e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~l 190 (594)
T TIGR01394 152 ----EQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHV 190 (594)
T ss_pred ----ccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhC
Confidence 0123578999999996 7999999998765
No 212
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.82 E-value=2.5e-19 Score=140.45 Aligned_cols=163 Identities=18% Similarity=0.125 Sum_probs=100.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcc--c----cCCCCCcceeEEE------------e---------C-----CE
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLV--Q----HQPTQYPTSEELS------------I---------G-----KI 64 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~--~----~~~t~~~~~~~~~------------~---------~-----~~ 64 (193)
.+.+++|+++|+.++|||||+.+|.+.... . ...|......... + + ..
T Consensus 6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (411)
T PRK04000 6 VQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLR 85 (411)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccccc
Confidence 567799999999999999999999653111 1 1112211110000 0 0 25
Q ss_pred EEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHH
Q 029437 65 KFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRY 144 (193)
Q Consensus 65 ~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~ 144 (193)
.+++|||||+..+..........+|++++|+|+.++....+....+..+ ... ...|+++++||+|+.......+..+
T Consensus 86 ~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l-~~~--~i~~iiVVlNK~Dl~~~~~~~~~~~ 162 (411)
T PRK04000 86 RVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMAL-DII--GIKNIVIVQNKIDLVSKERALENYE 162 (411)
T ss_pred EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHH-HHc--CCCcEEEEEEeeccccchhHHHHHH
Confidence 7999999999988776666667889999999998642111112222222 111 1347899999999975322221111
Q ss_pred hhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 145 HLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
.+.... . .......+++++||++|.|+++++++|.+.+
T Consensus 163 ~i~~~l-~---------~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l 200 (411)
T PRK04000 163 QIKEFV-K---------GTVAENAPIIPVSALHKVNIDALIEAIEEEI 200 (411)
T ss_pred HHHHHh-c---------cccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence 111100 0 0001236789999999999999999998754
No 213
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.82 E-value=1.7e-18 Score=128.51 Aligned_cols=122 Identities=20% Similarity=0.220 Sum_probs=86.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcc--c-----------------------cCCCCCcceeEEEeCCEEEEEEEcCChhh
Q 029437 22 KILFLGLDNAGKTTLLHMLKDERLV--Q-----------------------HQPTQYPTSEELSIGKIKFKAFDLGGHQI 76 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~~~~~--~-----------------------~~~t~~~~~~~~~~~~~~~~~~D~~G~~~ 76 (193)
+|+++|++|+|||||+++++...-. . ...+.......+.+.+.++++|||||+..
T Consensus 4 ni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~d 83 (267)
T cd04169 4 TFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHED 83 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCchH
Confidence 7999999999999999999743110 0 01122233456788899999999999998
Q ss_pred hHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC---HHHHHHhhCC
Q 029437 77 ARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAAS---EEELRYHLGL 148 (193)
Q Consensus 77 ~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~---~~~~~~~~~~ 148 (193)
+.......++.+|++++|+|+++... .....++... . ..++|+++++||+|+..+.. .+++.+.++.
T Consensus 84 f~~~~~~~l~~aD~~IlVvda~~g~~-~~~~~i~~~~-~---~~~~P~iivvNK~D~~~a~~~~~~~~l~~~l~~ 153 (267)
T cd04169 84 FSEDTYRTLTAVDSAVMVIDAAKGVE-PQTRKLFEVC-R---LRGIPIITFINKLDREGRDPLELLDEIEEELGI 153 (267)
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCcc-HHHHHHHHHH-H---hcCCCEEEEEECCccCCCCHHHHHHHHHHHHCC
Confidence 87766777889999999999987532 1222333322 2 24789999999999875543 3556665553
No 214
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.81 E-value=9.7e-19 Score=121.27 Aligned_cols=151 Identities=20% Similarity=0.250 Sum_probs=93.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCccee--EEEeCCEEEEEEEcCChh----------hhHhhHHhhcc---
Q 029437 23 ILFLGLDNAGKTTLLHMLKDERLV-QHQPTQYPTSE--ELSIGKIKFKAFDLGGHQ----------IARRVWKDYYA--- 86 (193)
Q Consensus 23 i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~--~~~~~~~~~~~~D~~G~~----------~~~~~~~~~~~--- 86 (193)
|+++|++|||||||++++.+..+. ...++.+.... ..... ..+.+|||||.. .+......++.
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVN-DKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRE 80 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEcc-CeEEEecCCCccccccCHHHHHHHHHHHHHHHHhCh
Confidence 789999999999999999954433 23334333222 22223 389999999942 23333333443
Q ss_pred cCCEEEEEEECCChhh--HHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCC
Q 029437 87 KVDAVVYLVDAYDKER--FAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSN 164 (193)
Q Consensus 87 ~~d~vl~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (193)
..+++++++|..+..+ ...+..++.. .+.|+++++||+|+................. +..
T Consensus 81 ~~~~~~~v~d~~~~~~~~~~~~~~~l~~-------~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l-----------~~~ 142 (170)
T cd01876 81 NLKGVVLLIDSRHGPTEIDLEMLDWLEE-------LGIPFLVVLTKADKLKKSELAKALKEIKKEL-----------KLF 142 (170)
T ss_pred hhhEEEEEEEcCcCCCHhHHHHHHHHHH-------cCCCEEEEEEchhcCChHHHHHHHHHHHHHH-----------Hhc
Confidence 4678999999976532 1222222222 2589999999999964332222222221111 001
Q ss_pred CcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 165 VRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 165 ~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
....+++++||+++.|+++++++|.+.+
T Consensus 143 ~~~~~~~~~Sa~~~~~~~~l~~~l~~~~ 170 (170)
T cd01876 143 EIDPPIILFSSLKGQGIDELRALIEKWL 170 (170)
T ss_pred cCCCceEEEecCCCCCHHHHHHHHHHhC
Confidence 1335788999999999999999998754
No 215
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.81 E-value=5.9e-20 Score=127.16 Aligned_cols=127 Identities=21% Similarity=0.338 Sum_probs=85.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEe---CCEEEEEEEcCChhhhHhhHHhh---cccCCEEEE
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSI---GKIKFKAFDLGGHQIARRVWKDY---YAKVDAVVY 93 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~---~~~~~~~~D~~G~~~~~~~~~~~---~~~~d~vl~ 93 (193)
...|+++||+|||||+|+.+|..+...++.....++.. ... .+..+.++|+|||.+.+...... ...+.+|+|
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~n~~-~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIf 81 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMENNIA-YNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIF 81 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B---SSEEEE-CCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEEE
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccCCce-EEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEEE
Confidence 34799999999999999999999977666655544332 222 34579999999999987655443 778999999
Q ss_pred EEECCC-hhhHHHHHHHHHHHHcCC--CCCCCcEEEEEeCCCCCCCCCHHHHHHhhC
Q 029437 94 LVDAYD-KERFAESKKELDALLSDE--ALANVPFLVLGNKIDIPYAASEEELRYHLG 147 (193)
Q Consensus 94 v~d~~~-~~~~~~~~~~~~~~~~~~--~~~~~pviiv~nK~D~~~~~~~~~~~~~~~ 147 (193)
|+|++. +..+..+.+++..++... ....+|+++++||.|+..+.+...+...++
T Consensus 82 vvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~~~Ik~~LE 138 (181)
T PF09439_consen 82 VVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPPKKIKKLLE 138 (181)
T ss_dssp EEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---HHHHHHHHH
T ss_pred EEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCHHHHHHHHH
Confidence 999974 556777777777776432 246899999999999998777666655555
No 216
>PRK10218 GTP-binding protein; Provisional
Probab=99.81 E-value=1e-18 Score=141.94 Aligned_cols=157 Identities=16% Similarity=0.190 Sum_probs=109.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc--CCcccc-------------CC----CCCcceeEEEeCCEEEEEEEcCChhhhHhhH
Q 029437 21 AKILFLGLDNAGKTTLLHMLKD--ERLVQH-------------QP----TQYPTSEELSIGKIKFKAFDLGGHQIARRVW 81 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~--~~~~~~-------------~~----t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~ 81 (193)
-+|+++|+.++|||||+++++. +.+... .. |.......+.+++..+++|||||+..+...+
T Consensus 6 RnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~v 85 (607)
T PRK10218 6 RNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGEV 85 (607)
T ss_pred eEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHHH
Confidence 4899999999999999999986 223221 11 2222344566788999999999999999888
Q ss_pred HhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCH---HHHHHhhCCCccccCCCcc
Q 029437 82 KDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASE---EELRYHLGLSNFTTGKGKV 158 (193)
Q Consensus 82 ~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~~~ 158 (193)
..+++.+|++++|+|+.+... .+....+..... .++|.++++||+|+..+... +++.+.+.... .
T Consensus 86 ~~~l~~aDg~ILVVDa~~G~~-~qt~~~l~~a~~----~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~----~--- 153 (607)
T PRK10218 86 ERVMSMVDSVLLVVDAFDGPM-PQTRFVTKKAFA----YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLD----A--- 153 (607)
T ss_pred HHHHHhCCEEEEEEecccCcc-HHHHHHHHHHHH----cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccC----c---
Confidence 889999999999999987532 223333444333 37899999999999754332 23333332100 0
Q ss_pred ccCCCCCcceEEEEeeeecCC----------ChhhHHHhhhhhc
Q 029437 159 NLADSNVRPLEVFMCSIVRKM----------GYGDGFKWLSQYI 192 (193)
Q Consensus 159 ~~~~~~~~~~~~~~~Sa~~g~----------gv~el~~~i~~~~ 192 (193)
. .....++++.+||++|. |+..|++.|.+.+
T Consensus 154 -~--~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~i 194 (607)
T PRK10218 154 -T--DEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHV 194 (607)
T ss_pred -c--ccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhC
Confidence 0 01123679999999998 5888998888765
No 217
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.80 E-value=1.7e-19 Score=141.10 Aligned_cols=159 Identities=17% Similarity=0.262 Sum_probs=125.2
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCc---ceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEE
Q 029437 16 LWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYP---TSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVV 92 (193)
Q Consensus 16 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~---~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl 92 (193)
.+++.+||+++|+.|+|||||+-++...++....|..-+ ....+.-..+..++.|++.....+......++++|++.
T Consensus 5 ~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~ 84 (625)
T KOG1707|consen 5 ETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVIC 84 (625)
T ss_pred cCccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEE
Confidence 467889999999999999999999999999876663322 12333445567899999987777777677789999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHcCCC--CCCCcEEEEEeCCCCCCCCCH--HH----HHHhhCCCccccCCCccccCCCC
Q 029437 93 YLVDAYDKERFAESKKELDALLSDEA--LANVPFLVLGNKIDIPYAASE--EE----LRYHLGLSNFTTGKGKVNLADSN 164 (193)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~pviiv~nK~D~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~ 164 (193)
++++++++++++.+...|.+++.... ..++|+|+|+||+|....... +. ++.++.
T Consensus 85 lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~----------------- 147 (625)
T KOG1707|consen 85 LVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFA----------------- 147 (625)
T ss_pred EEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhH-----------------
Confidence 99999999999999999999987654 258999999999999843332 22 333332
Q ss_pred CcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 165 VRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 165 ~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
.....++|||++..++.|+|..-.+++
T Consensus 148 -EiEtciecSA~~~~n~~e~fYyaqKaV 174 (625)
T KOG1707|consen 148 -EIETCIECSALTLANVSELFYYAQKAV 174 (625)
T ss_pred -HHHHHHhhhhhhhhhhHhhhhhhhhee
Confidence 234578999999999999999877764
No 218
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.80 E-value=3.7e-18 Score=125.87 Aligned_cols=169 Identities=18% Similarity=0.178 Sum_probs=117.2
Q ss_pred HHHHHHHHHhhC---CCC-CccEEEEEcCCCCCHHHHHHHHhcCCcc--c-cCCCCCcceeEEEeCCEEEEEEEcCChhh
Q 029437 4 LDWFYGVLASLG---LWQ-KEAKILFLGLDNAGKTTLLHMLKDERLV--Q-HQPTQYPTSEELSIGKIKFKAFDLGGHQI 76 (193)
Q Consensus 4 ~~~~~~~~~~~~---~~~-~~~~i~v~G~~~~GKssl~~~l~~~~~~--~-~~~t~~~~~~~~~~~~~~~~~~D~~G~~~ 76 (193)
|.|+....+.++ .-+ ....|+|.|.||+|||||++++++.+.- + ...|.+.+.+.++.+..+++++||||.-.
T Consensus 148 L~fL~~~r~~l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLD 227 (346)
T COG1084 148 LEFLRKARDHLKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLD 227 (346)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCceEEEecCCcccC
Confidence 445555554444 333 7789999999999999999999987743 2 22478899999999999999999999311
Q ss_pred ---------hHhhHHhhcccCCEEEEEEECCChhh--HHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHh
Q 029437 77 ---------ARRVWKDYYAKVDAVVYLVDAYDKER--FAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYH 145 (193)
Q Consensus 77 ---------~~~~~~~~~~~~d~vl~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~ 145 (193)
..+.....-+-.++|+|++|.+..+. .+.-..++.++-.. .+.|+++|+||+|..+....+++...
T Consensus 228 RPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~---f~~p~v~V~nK~D~~~~e~~~~~~~~ 304 (346)
T COG1084 228 RPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKEL---FKAPIVVVINKIDIADEEKLEEIEAS 304 (346)
T ss_pred CChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHh---cCCCeEEEEecccccchhHHHHHHHH
Confidence 11111222234689999999987643 44555666666433 34899999999999865555555544
Q ss_pred hCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhh
Q 029437 146 LGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQY 191 (193)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~ 191 (193)
..... ......+|+..+.+++++.+.+...
T Consensus 305 ~~~~~----------------~~~~~~~~~~~~~~~d~~~~~v~~~ 334 (346)
T COG1084 305 VLEEG----------------GEEPLKISATKGCGLDKLREEVRKT 334 (346)
T ss_pred HHhhc----------------cccccceeeeehhhHHHHHHHHHHH
Confidence 33222 2335688999999998877666543
No 219
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.80 E-value=9.2e-19 Score=128.21 Aligned_cols=152 Identities=23% Similarity=0.301 Sum_probs=110.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc---cCCCCCcceeEEEeCCEE-EEEEEcCChhhh-------HhhHHhhcccCC
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDERLVQ---HQPTQYPTSEELSIGKIK-FKAFDLGGHQIA-------RRVWKDYYAKVD 89 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~~-~~~~D~~G~~~~-------~~~~~~~~~~~d 89 (193)
..++++|.||||||||++++++.+..- ..+|..+....+.+++.. +++-|.||.-.- .-.+...+..++
T Consensus 197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~ 276 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERCK 276 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHhhc
Confidence 468999999999999999999876421 223667777777777654 999999995432 123334457899
Q ss_pred EEEEEEECCCh---hhHHHHHHHHHHH-HcCCCCCCCcEEEEEeCCCCCCCCC-H-HHHHHhhCCCccccCCCccccCCC
Q 029437 90 AVVYLVDAYDK---ERFAESKKELDAL-LSDEALANVPFLVLGNKIDIPYAAS-E-EELRYHLGLSNFTTGKGKVNLADS 163 (193)
Q Consensus 90 ~vl~v~d~~~~---~~~~~~~~~~~~~-~~~~~~~~~pviiv~nK~D~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~ 163 (193)
.++||+|++.+ +-++++..++.++ +.+....+.|.++|+||+|++.+.. . +++++.+.
T Consensus 277 ~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L~~~lq---------------- 340 (366)
T KOG1489|consen 277 GLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLSSLAKRLQ---------------- 340 (366)
T ss_pred eEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHHHHHHHHHcC----------------
Confidence 99999999887 6667777666665 2344567899999999999962211 1 23333332
Q ss_pred CCcceEEEEeeeecCCChhhHHHhhhhh
Q 029437 164 NVRPLEVFMCSIVRKMGYGDGFKWLSQY 191 (193)
Q Consensus 164 ~~~~~~~~~~Sa~~g~gv~el~~~i~~~ 191 (193)
...++++||++++|+.++++.|...
T Consensus 341 ---~~~V~pvsA~~~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 341 ---NPHVVPVSAKSGEGLEELLNGLREL 365 (366)
T ss_pred ---CCcEEEeeeccccchHHHHHHHhhc
Confidence 2368999999999999999988653
No 220
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.80 E-value=2.8e-18 Score=112.81 Aligned_cols=160 Identities=19% Similarity=0.263 Sum_probs=121.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc---cCCCCC-cceeEEEeC---CEEEEEEEcCChhhh-HhhHHhhcccCC
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQ---HQPTQY-PTSEELSIG---KIKFKAFDLGGHQIA-RRVWKDYYAKVD 89 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~---~~~t~~-~~~~~~~~~---~~~~~~~D~~G~~~~-~~~~~~~~~~~d 89 (193)
-+..+++++|.-++|||+++.++...+... ..||.. .....++.+ .-.+.++||.|.... .++-.++++.+|
T Consensus 7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aD 86 (198)
T KOG3883|consen 7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFAD 86 (198)
T ss_pred CcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCc
Confidence 355799999999999999999998776443 334543 333444433 357999999998887 455578899999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceE
Q 029437 90 AVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLE 169 (193)
Q Consensus 90 ~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
++++|++..|++||+.+...-..+-.......+|+++++||.|+..+...+.-..+..... ..++
T Consensus 87 afVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~r---------------Ekvk 151 (198)
T KOG3883|consen 87 AFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKR---------------EKVK 151 (198)
T ss_pred eEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhh---------------hhee
Confidence 9999999999999998887777776666667899999999999974433333333333333 4578
Q ss_pred EEEeeeecCCChhhHHHhhhhhc
Q 029437 170 VFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
.++++|..+..+-|-|..+..++
T Consensus 152 l~eVta~dR~sL~epf~~l~~rl 174 (198)
T KOG3883|consen 152 LWEVTAMDRPSLYEPFTYLASRL 174 (198)
T ss_pred EEEEEeccchhhhhHHHHHHHhc
Confidence 89999999999988888887654
No 221
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.79 E-value=1.5e-18 Score=141.59 Aligned_cols=156 Identities=19% Similarity=0.111 Sum_probs=100.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc------cCCCCCcceeEEEe-CCEEEEEEEcCChhhhHhhHHhhcccCCEEEE
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDERLVQ------HQPTQYPTSEELSI-GKIKFKAFDLGGHQIARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~~~~------~~~t~~~~~~~~~~-~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~ 93 (193)
+.|+++|++++|||||++++++.+... ...|.+.....+.. ++..+.+|||||++.+...+...+..+|++++
T Consensus 1 ~ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL 80 (614)
T PRK10512 1 MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALL 80 (614)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence 358999999999999999998643211 12333333223332 34678999999999997777777899999999
Q ss_pred EEECCChhhHHHHHHHHHHHHcCCCCCCCc-EEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEE
Q 029437 94 LVDAYDKERFAESKKELDALLSDEALANVP-FLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFM 172 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (193)
|+|+.+.-. .+..+.+. ++.. .++| +++++||+|+......++..+++.... ........++++
T Consensus 81 VVda~eg~~-~qT~ehl~-il~~---lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l----------~~~~~~~~~ii~ 145 (614)
T PRK10512 81 VVACDDGVM-AQTREHLA-ILQL---TGNPMLTVALTKADRVDEARIAEVRRQVKAVL----------REYGFAEAKLFV 145 (614)
T ss_pred EEECCCCCc-HHHHHHHH-HHHH---cCCCeEEEEEECCccCCHHHHHHHHHHHHHHH----------HhcCCCCCcEEE
Confidence 999987421 11122222 2222 2455 579999999974322222222222111 000002357899
Q ss_pred eeeecCCChhhHHHhhhhh
Q 029437 173 CSIVRKMGYGDGFKWLSQY 191 (193)
Q Consensus 173 ~Sa~~g~gv~el~~~i~~~ 191 (193)
+||++|.|+++++++|.+.
T Consensus 146 VSA~tG~gI~~L~~~L~~~ 164 (614)
T PRK10512 146 TAATEGRGIDALREHLLQL 164 (614)
T ss_pred EeCCCCCCCHHHHHHHHHh
Confidence 9999999999999999754
No 222
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.79 E-value=3e-18 Score=137.13 Aligned_cols=146 Identities=25% Similarity=0.262 Sum_probs=111.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcc-c--cCCCCCcceeEEEeCCEEEEEEEcCChhhhH------hhHHhhc--cc
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDERLV-Q--HQPTQYPTSEELSIGKIKFKAFDLGGHQIAR------RVWKDYY--AK 87 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~--~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~------~~~~~~~--~~ 87 (193)
+..+++++|+||+|||||+|++++.... . ...|+...+..+.+.+.+++++|+||-.+.. ....+++ .+
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~ 81 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGK 81 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCC
Confidence 4567999999999999999999988743 2 3347888889999999999999999965432 2223332 36
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC----CCCHHHHHHhhCCCccccCCCccccCCC
Q 029437 88 VDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY----AASEEELRYHLGLSNFTTGKGKVNLADS 163 (193)
Q Consensus 88 ~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (193)
+|+++.|+|+++-+. ......++++ .+.|++++.|++|... ..+.+.+.+.++
T Consensus 82 ~D~ivnVvDAtnLeR---nLyltlQLlE----~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LG---------------- 138 (653)
T COG0370 82 PDLIVNVVDATNLER---NLYLTLQLLE----LGIPMILALNMIDEAKKRGIRIDIEKLSKLLG---------------- 138 (653)
T ss_pred CCEEEEEcccchHHH---HHHHHHHHHH----cCCCeEEEeccHhhHHhcCCcccHHHHHHHhC----------------
Confidence 799999999988754 2223333433 3889999999999873 345666777776
Q ss_pred CCcceEEEEeeeecCCChhhHHHhhhhh
Q 029437 164 NVRPLEVFMCSIVRKMGYGDGFKWLSQY 191 (193)
Q Consensus 164 ~~~~~~~~~~Sa~~g~gv~el~~~i~~~ 191 (193)
++++++||++|.|++++++.|.+.
T Consensus 139 ----vPVv~tvA~~g~G~~~l~~~i~~~ 162 (653)
T COG0370 139 ----VPVVPTVAKRGEGLEELKRAIIEL 162 (653)
T ss_pred ----CCEEEEEeecCCCHHHHHHHHHHh
Confidence 455999999999999999998753
No 223
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.79 E-value=6.9e-18 Score=137.09 Aligned_cols=164 Identities=19% Similarity=0.200 Sum_probs=101.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccccCC-----CCCcceeEEEe---------C-------CEEEEEEEcCChhhh
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQP-----TQYPTSEELSI---------G-------KIKFKAFDLGGHQIA 77 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~-----t~~~~~~~~~~---------~-------~~~~~~~D~~G~~~~ 77 (193)
+...|.++|++|+|||||++++.+.......+ +.+........ . ...+.+|||||+..+
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f 84 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF 84 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence 44679999999999999999998665433222 12211111110 0 012789999999999
Q ss_pred HhhHHhhcccCCEEEEEEECCC---hhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCH--------------H
Q 029437 78 RRVWKDYYAKVDAVVYLVDAYD---KERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASE--------------E 140 (193)
Q Consensus 78 ~~~~~~~~~~~d~vl~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~--------------~ 140 (193)
..++...+..+|++++|+|+++ ++++..+. .+ .. .++|+++++||+|+.+.... .
T Consensus 85 ~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~----~~-~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~ 156 (586)
T PRK04004 85 TNLRKRGGALADIAILVVDINEGFQPQTIEAIN----IL-KR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQ 156 (586)
T ss_pred HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH----HH-HH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhH
Confidence 9888888889999999999987 44443332 11 11 47899999999998521110 0
Q ss_pred HHHHhhC-------CCccccCCCcccc--CCCCCcceEEEEeeeecCCChhhHHHhhhh
Q 029437 141 ELRYHLG-------LSNFTTGKGKVNL--ADSNVRPLEVFMCSIVRKMGYGDGFKWLSQ 190 (193)
Q Consensus 141 ~~~~~~~-------~~~~~~~~~~~~~--~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~ 190 (193)
.+...+. ......+...+.+ ........+++++||++|.|++++++.+..
T Consensus 157 ~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~ 215 (586)
T PRK04004 157 RVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG 215 (586)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence 0111000 0000000000000 012234578999999999999999988753
No 224
>COG2262 HflX GTPases [General function prediction only]
Probab=99.79 E-value=2e-17 Score=125.39 Aligned_cols=154 Identities=19% Similarity=0.237 Sum_probs=112.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc---cCCCCCcceeEEEeC-CEEEEEEEcCCh---------hhhHhhHHh
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ---HQPTQYPTSEELSIG-KIKFKAFDLGGH---------QIARRVWKD 83 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~~D~~G~---------~~~~~~~~~ 83 (193)
...-+.|.++|-.|||||||+|++++..... ...|.+++...+.+. +..+.+-||.|- ..|++...+
T Consensus 189 ~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE 268 (411)
T COG2262 189 RSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEE 268 (411)
T ss_pred ccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHHH
Confidence 3466789999999999999999999776432 345888888888877 578999999993 233443333
Q ss_pred hcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCC
Q 029437 84 YYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADS 163 (193)
Q Consensus 84 ~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (193)
...+|++++|+|+++|...+++ +....++.+....++|+|++.||+|+....... .......
T Consensus 269 -~~~aDlllhVVDaSdp~~~~~~-~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~~~---~~~~~~~------------- 330 (411)
T COG2262 269 -VKEADLLLHVVDASDPEILEKL-EAVEDVLAEIGADEIPIILVLNKIDLLEDEEIL---AELERGS------------- 330 (411)
T ss_pred -hhcCCEEEEEeecCChhHHHHH-HHHHHHHHHcCCCCCCEEEEEecccccCchhhh---hhhhhcC-------------
Confidence 3688999999999999654444 344455555666789999999999987443311 1111000
Q ss_pred CCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 164 NVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 164 ~~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
...+.+||++|.|+++|++.|...+
T Consensus 331 ----~~~v~iSA~~~~gl~~L~~~i~~~l 355 (411)
T COG2262 331 ----PNPVFISAKTGEGLDLLRERIIELL 355 (411)
T ss_pred ----CCeEEEEeccCcCHHHHHHHHHHHh
Confidence 1468999999999999999988764
No 225
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.79 E-value=3.9e-19 Score=117.09 Aligned_cols=160 Identities=19% Similarity=0.218 Sum_probs=120.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEE--eCCEEEEEEEcCChhhhHhhHHhhcccCCEEE
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS--EELS--IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVV 92 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl 92 (193)
.-.++|.++|++..|||||+-.+.+.++.+ ...+.+.+. ..+. .-++.+.+||.+|++++..+.+....++-+++
T Consensus 18 ~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIl 97 (205)
T KOG1673|consen 18 LVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAIL 97 (205)
T ss_pred ceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEE
Confidence 346899999999999999999999888753 334555443 3333 34578999999999999999998889999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCC---CHHHHHHhhCCCccccCCCccccCCCCCcceE
Q 029437 93 YLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAA---SEEELRYHLGLSNFTTGKGKVNLADSNVRPLE 169 (193)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
+++|.+.++++..+.+|+++....+ ..-+| |+++||.|..-.. ..+++..+-.... + .....
T Consensus 98 FmFDLt~r~TLnSi~~WY~QAr~~N-ktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YA----k---------~mnAs 162 (205)
T KOG1673|consen 98 FMFDLTRRSTLNSIKEWYRQARGLN-KTAIP-ILVGTKYDLFIDLPPELQETISRQARKYA----K---------VMNAS 162 (205)
T ss_pred EEEecCchHHHHHHHHHHHHHhccC-Cccce-EEeccchHhhhcCCHHHHHHHHHHHHHHH----H---------HhCCc
Confidence 9999999999999999999985432 23344 6889999987332 2333433332211 0 12356
Q ss_pred EEEeeeecCCChhhHHHhhhhhc
Q 029437 170 VFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
.+.||+....|++.+|+.+..++
T Consensus 163 L~F~Sts~sINv~KIFK~vlAkl 185 (205)
T KOG1673|consen 163 LFFCSTSHSINVQKIFKIVLAKL 185 (205)
T ss_pred EEEeeccccccHHHHHHHHHHHH
Confidence 79999999999999999887653
No 226
>PRK12736 elongation factor Tu; Reviewed
Probab=99.79 E-value=7.8e-18 Score=131.65 Aligned_cols=164 Identities=18% Similarity=0.135 Sum_probs=103.3
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhcCCc----------c---------ccCCCCCcceeEEEeCCEEEEEEEcCChhh
Q 029437 16 LWQKEAKILFLGLDNAGKTTLLHMLKDERL----------V---------QHQPTQYPTSEELSIGKIKFKAFDLGGHQI 76 (193)
Q Consensus 16 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~----------~---------~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~ 76 (193)
..+++++|+++|++++|||||+++|++... . ....|.+.....+..++..+.++||||+..
T Consensus 8 ~~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~ 87 (394)
T PRK12736 8 RSKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHAD 87 (394)
T ss_pred cCCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHH
Confidence 467789999999999999999999975210 0 111233333333444567899999999998
Q ss_pred hHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCc-EEEEEeCCCCCCCCCH-HHHHHhhCCCccccC
Q 029437 77 ARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVP-FLVLGNKIDIPYAASE-EELRYHLGLSNFTTG 154 (193)
Q Consensus 77 ~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~ 154 (193)
+..........+|++++|+|+.+... ....+.+..... .++| +|+++||+|+...... +.+.+++........
T Consensus 88 f~~~~~~~~~~~d~~llVvd~~~g~~-~~t~~~~~~~~~----~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~ 162 (394)
T PRK12736 88 YVKNMITGAAQMDGAILVVAATDGPM-PQTREHILLARQ----VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYD 162 (394)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHHH----cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhC
Confidence 87666666788999999999976422 122233333322 2677 6789999999732221 112222221110000
Q ss_pred CCccccCCCCCcceEEEEeeeecCC--------ChhhHHHhhhhhc
Q 029437 155 KGKVNLADSNVRPLEVFMCSIVRKM--------GYGDGFKWLSQYI 192 (193)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~Sa~~g~--------gv~el~~~i~~~~ 192 (193)
. .....+++++||++|. ++.++++.|.+.+
T Consensus 163 ~--------~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~l 200 (394)
T PRK12736 163 F--------PGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYI 200 (394)
T ss_pred C--------CcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhC
Confidence 0 0023689999999983 5788888877653
No 227
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=3.9e-18 Score=133.03 Aligned_cols=157 Identities=18% Similarity=0.199 Sum_probs=116.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccccCC---CCCcceeEEEeC---CEEEEEEEcCChhhhHhhHHhhcccCCEEE
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQP---TQYPTSEELSIG---KIKFKAFDLGGHQIARRVWKDYYAKVDAVV 92 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~---t~~~~~~~~~~~---~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl 92 (193)
..+-+.++|+...|||||+..+-......... |.....+.+..+ ...+.++|||||..|..++....+-+|+++
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaI 83 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAI 83 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEE
Confidence 34568999999999999999998777665433 555556666664 358999999999999999999889999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEE
Q 029437 93 YLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFM 172 (193)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (193)
+|++++|.-.-+.+.. +++....++|+++.+||+|++.. .+.....++....+ .+..+.+...+++
T Consensus 84 LVVa~dDGv~pQTiEA-----I~hak~a~vP~iVAiNKiDk~~~-np~~v~~el~~~gl--------~~E~~gg~v~~Vp 149 (509)
T COG0532 84 LVVAADDGVMPQTIEA-----INHAKAAGVPIVVAINKIDKPEA-NPDKVKQELQEYGL--------VPEEWGGDVIFVP 149 (509)
T ss_pred EEEEccCCcchhHHHH-----HHHHHHCCCCEEEEEecccCCCC-CHHHHHHHHHHcCC--------CHhhcCCceEEEE
Confidence 9999988532222211 12233469999999999999743 45554444443322 2234446688999
Q ss_pred eeeecCCChhhHHHhhh
Q 029437 173 CSIVRKMGYGDGFKWLS 189 (193)
Q Consensus 173 ~Sa~~g~gv~el~~~i~ 189 (193)
+||++|+|+++|++.|.
T Consensus 150 vSA~tg~Gi~eLL~~il 166 (509)
T COG0532 150 VSAKTGEGIDELLELIL 166 (509)
T ss_pred eeccCCCCHHHHHHHHH
Confidence 99999999999999875
No 228
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.78 E-value=1.6e-17 Score=121.20 Aligned_cols=167 Identities=21% Similarity=0.185 Sum_probs=106.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccccC----CCCCcceeEEEeCCEEEEEEEcCChhhh------------HhhH
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQ----PTQYPTSEELSIGKIKFKAFDLGGHQIA------------RRVW 81 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~D~~G~~~~------------~~~~ 81 (193)
.+..+|+|+|.||+|||||.|.+.+.+..... .|.....+.+.-+.+.+.++||||...- .+-.
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~ 149 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNP 149 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCH
Confidence 46689999999999999999999998866432 2444455566667899999999993211 1111
Q ss_pred HhhcccCCEEEEEEECCChhhHH--HHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC-HHHHHHhhCC----------
Q 029437 82 KDYYAKVDAVVYLVDAYDKERFA--ESKKELDALLSDEALANVPFLVLGNKIDIPYAAS-EEELRYHLGL---------- 148 (193)
Q Consensus 82 ~~~~~~~d~vl~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~-~~~~~~~~~~---------- 148 (193)
...+..+|++++|+|++++-..- .+...+... .++|-+++.||.|....-. .-+..+.+..
T Consensus 150 ~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~y------s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v 223 (379)
T KOG1423|consen 150 RDAAQNADCVVVVVDASATRTPLHPRVLHMLEEY------SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEV 223 (379)
T ss_pred HHHHhhCCEEEEEEeccCCcCccChHHHHHHHHH------hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhH
Confidence 23457899999999998642211 122222333 5889999999999873211 1111111110
Q ss_pred ----Ccccc-CCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 149 ----SNFTT-GKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 149 ----~~~~~-~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
..... .+. .-...+....++|.+||++|+|++++.+||..+.
T Consensus 224 ~~~f~~~p~~~~~--~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa 270 (379)
T KOG1423|consen 224 QEKFTDVPSDEKW--RTICGWSHFERVFMVSALYGEGIKDLKQYLMSQA 270 (379)
T ss_pred HHHhccCCccccc--ccccCcccceeEEEEecccccCHHHHHHHHHhcC
Confidence 01000 111 0011223456899999999999999999998753
No 229
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.78 E-value=4.7e-18 Score=136.47 Aligned_cols=125 Identities=19% Similarity=0.192 Sum_probs=87.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCc--c-------------------c----cCCCCCcceeEEEeCCEEEEEEEcCC
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDERL--V-------------------Q----HQPTQYPTSEELSIGKIKFKAFDLGG 73 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~~--~-------------------~----~~~t~~~~~~~~~~~~~~~~~~D~~G 73 (193)
+.-+|+|+|++|+|||||+++++...- . + ...+.......+.+++..+++|||||
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG 88 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG 88 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence 345899999999999999999963110 0 0 01122233456778889999999999
Q ss_pred hhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC---HHHHHHhhCC
Q 029437 74 HQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAAS---EEELRYHLGL 148 (193)
Q Consensus 74 ~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~---~~~~~~~~~~ 148 (193)
+..+.......+..+|++++|+|+++.... ....++... ...++|+++++||+|+..... .+++.+.++.
T Consensus 89 ~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~----~~~~iPiiv~iNK~D~~~a~~~~~l~~i~~~l~~ 161 (526)
T PRK00741 89 HEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVC----RLRDTPIFTFINKLDRDGREPLELLDEIEEVLGI 161 (526)
T ss_pred chhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHH----HhcCCCEEEEEECCcccccCHHHHHHHHHHHhCC
Confidence 998887777778999999999999875321 233333332 224899999999999875443 2456666654
No 230
>PRK12735 elongation factor Tu; Reviewed
Probab=99.77 E-value=1.9e-17 Score=129.54 Aligned_cols=163 Identities=15% Similarity=0.110 Sum_probs=102.0
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhcC-------Cc---c---------ccCCCCCcceeEEEeCCEEEEEEEcCChhh
Q 029437 16 LWQKEAKILFLGLDNAGKTTLLHMLKDE-------RL---V---------QHQPTQYPTSEELSIGKIKFKAFDLGGHQI 76 (193)
Q Consensus 16 ~~~~~~~i~v~G~~~~GKssl~~~l~~~-------~~---~---------~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~ 76 (193)
..+++++|+++|++++|||||+++|++. .+ . ....|.......+..++..+.++||||+..
T Consensus 8 ~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~ 87 (396)
T PRK12735 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHAD 87 (396)
T ss_pred CCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHH
Confidence 4577899999999999999999999852 10 0 011122223333445567899999999988
Q ss_pred hHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEE-EEEeCCCCCCCCC-HHHHHHhhCCCccccC
Q 029437 77 ARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFL-VLGNKIDIPYAAS-EEELRYHLGLSNFTTG 154 (193)
Q Consensus 77 ~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pvi-iv~nK~D~~~~~~-~~~~~~~~~~~~~~~~ 154 (193)
+.......+..+|++++|+|+.+... .+..+.+..... .++|.+ +++||+|+..... .+.+.+++........
T Consensus 88 f~~~~~~~~~~aD~~llVvda~~g~~-~qt~e~l~~~~~----~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~ 162 (396)
T PRK12735 88 YVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYD 162 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCCc-hhHHHHHHHHHH----cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcC
Confidence 87766677789999999999987422 222233333321 367865 5799999974221 1122222211110000
Q ss_pred CCccccCCCCCcceEEEEeeeecCC----------ChhhHHHhhhhh
Q 029437 155 KGKVNLADSNVRPLEVFMCSIVRKM----------GYGDGFKWLSQY 191 (193)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~Sa~~g~----------gv~el~~~i~~~ 191 (193)
. .....+++++||.+|. ++.++++.|.+.
T Consensus 163 ~--------~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~ 201 (396)
T PRK12735 163 F--------PGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSY 201 (396)
T ss_pred C--------CcCceeEEecchhccccCCCCCcccccHHHHHHHHHhc
Confidence 0 0023688999999984 667777777654
No 231
>PLN03126 Elongation factor Tu; Provisional
Probab=99.76 E-value=6.7e-17 Score=128.41 Aligned_cols=156 Identities=17% Similarity=0.101 Sum_probs=99.0
Q ss_pred HHhhCCCCCccEEEEEcCCCCCHHHHHHHHhcCCcc-------------------ccCCCCCcceeEEEeCCEEEEEEEc
Q 029437 11 LASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLV-------------------QHQPTQYPTSEELSIGKIKFKAFDL 71 (193)
Q Consensus 11 ~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~-------------------~~~~t~~~~~~~~~~~~~~~~~~D~ 71 (193)
.+.++..+..++|+++|++++|||||+++|+...-. ....|.+.....+..++..+.++|+
T Consensus 72 ~~~~~~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDt 151 (478)
T PLN03126 72 RGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDC 151 (478)
T ss_pred HhhhhccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEEC
Confidence 344445678899999999999999999999852110 0111223333445567789999999
Q ss_pred CChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCc-EEEEEeCCCCCCCCC-HHHHHHhhCCC
Q 029437 72 GGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVP-FLVLGNKIDIPYAAS-EEELRYHLGLS 149 (193)
Q Consensus 72 ~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~D~~~~~~-~~~~~~~~~~~ 149 (193)
||+..+.......+..+|++++|+|+.+... .+..+.+..... .++| +++++||+|+.+... .+.+.+++...
T Consensus 152 PGh~~f~~~~~~g~~~aD~ailVVda~~G~~-~qt~e~~~~~~~----~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~ 226 (478)
T PLN03126 152 PGHADYVKNMITGAAQMDGAILVVSGADGPM-PQTKEHILLAKQ----VGVPNMVVFLNKQDQVDDEELLELVELEVREL 226 (478)
T ss_pred CCHHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCeEEEEEecccccCHHHHHHHHHHHHHHH
Confidence 9999987777777789999999999986532 223333333322 3678 788999999974211 12222222211
Q ss_pred ccccCCCccccCCCCCcceEEEEeeeecCC
Q 029437 150 NFTTGKGKVNLADSNVRPLEVFMCSIVRKM 179 (193)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 179 (193)
..... ++ ....+++++||.+|.
T Consensus 227 l~~~g-----~~---~~~~~~vp~Sa~~g~ 248 (478)
T PLN03126 227 LSSYE-----FP---GDDIPIISGSALLAL 248 (478)
T ss_pred HHhcC-----CC---cCcceEEEEEccccc
Confidence 10000 00 024788999998874
No 232
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.75 E-value=4.4e-17 Score=117.61 Aligned_cols=108 Identities=21% Similarity=0.223 Sum_probs=76.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcccc----------------------CCCCCcceeEEEe-----CCEEEEEEEcCCh
Q 029437 22 KILFLGLDNAGKTTLLHMLKDERLVQH----------------------QPTQYPTSEELSI-----GKIKFKAFDLGGH 74 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~~~~~~~----------------------~~t~~~~~~~~~~-----~~~~~~~~D~~G~ 74 (193)
+|+++|++|+|||||++++........ ..+.......+.+ ....+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 689999999999999999976443211 0111222222222 2478999999999
Q ss_pred hhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCC
Q 029437 75 QIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIP 134 (193)
Q Consensus 75 ~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~ 134 (193)
..+.......+..+|++++|+|+.+..+.. ...++..... .+.|+++++||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~-~~~~~~~~~~----~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSN-TERLIRHAIL----EGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHH-HHHHHHHHHH----cCCCEEEEEECcccC
Confidence 988877788889999999999998765442 2333333322 358999999999986
No 233
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.75 E-value=2.8e-17 Score=122.60 Aligned_cols=110 Identities=21% Similarity=0.145 Sum_probs=81.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc---------------------cCCCCCcceeEEEeCCEEEEEEEcCChhhhHhh
Q 029437 22 KILFLGLDNAGKTTLLHMLKDERLVQ---------------------HQPTQYPTSEELSIGKIKFKAFDLGGHQIARRV 80 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~~~~~~---------------------~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~ 80 (193)
+|+++|++|+|||||++++....... ...+.......+.+.+..+.+|||||+..+...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 58999999999999999986432110 122334455667788899999999999888777
Q ss_pred HHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC
Q 029437 81 WKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA 136 (193)
Q Consensus 81 ~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~ 136 (193)
....+..+|++++|+|+++.... .....+.... ..++|+++++||+|+...
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~-~~~~~~~~~~----~~~~p~iivvNK~D~~~~ 131 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEV-GTEKLWEFAD----EAGIPRIIFINKMDRERA 131 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCH-HHHHHHHHHH----HcCCCEEEEEECCccCCC
Confidence 77788999999999999876443 2233333332 247899999999999754
No 234
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.75 E-value=7.2e-17 Score=119.94 Aligned_cols=123 Identities=20% Similarity=0.109 Sum_probs=87.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCc--c-------------------ccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhh
Q 029437 22 KILFLGLDNAGKTTLLHMLKDERL--V-------------------QHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRV 80 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~~~~--~-------------------~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~ 80 (193)
+|+++|++|+|||||++++....- . ....|.......+.+.+..+.++||||+..+...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 589999999999999999963210 0 1122445556778888999999999999888877
Q ss_pred HHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCC---CHHHHHHhhCCC
Q 029437 81 WKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAA---SEEELRYHLGLS 149 (193)
Q Consensus 81 ~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~---~~~~~~~~~~~~ 149 (193)
....++.+|++++|+|+.+...- .....+..... .++|+++++||+|+.... ..+++.+.++..
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~-~t~~~~~~~~~----~~~p~ivviNK~D~~~a~~~~~~~~l~~~l~~~ 147 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEP-QTETVWRQADR----YNVPRIAFVNKMDRTGADFFRVVEQIREKLGAN 147 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCH-HHHHHHHHHHH----cCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCC
Confidence 78888999999999999775321 22333333322 478999999999997532 134455555543
No 235
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.75 E-value=4.5e-17 Score=128.82 Aligned_cols=155 Identities=14% Similarity=0.073 Sum_probs=101.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCC--cc--------------------------------ccCCCCCcceeEEEeC
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDER--LV--------------------------------QHQPTQYPTSEELSIG 62 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~--~~--------------------------------~~~~t~~~~~~~~~~~ 62 (193)
.+.+++|+++|+.++|||||+.+|+... .. ....|.+.....+.++
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~ 83 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence 4677899999999999999999986411 00 0112334445556777
Q ss_pred CEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhh---H---HHHHHHHHHHHcCCCCCCCc-EEEEEeCCCCCC
Q 029437 63 KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKER---F---AESKKELDALLSDEALANVP-FLVLGNKIDIPY 135 (193)
Q Consensus 63 ~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~---~---~~~~~~~~~~~~~~~~~~~p-viiv~nK~D~~~ 135 (193)
+..++++|+||+..|...+...+..+|++++|+|+.+..- + .+..+.+.... ..++| +|+++||+|...
T Consensus 84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~----~~gi~~iiv~vNKmD~~~ 159 (446)
T PTZ00141 84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAF----TLGVKQMIVCINKMDDKT 159 (446)
T ss_pred CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHH----HcCCCeEEEEEEcccccc
Confidence 8899999999999998877778899999999999976420 0 12223333221 13666 679999999542
Q ss_pred ----CCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhh
Q 029437 136 ----AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGD 183 (193)
Q Consensus 136 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e 183 (193)
....+++.+++...+...... ...++++++|+.+|.|+.+
T Consensus 160 ~~~~~~~~~~i~~~i~~~l~~~g~~--------~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 160 VNYSQERYDEIKKEVSAYLKKVGYN--------PEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred chhhHHHHHHHHHHHHHHHHhcCCC--------cccceEEEeecccCCCccc
Confidence 122333333333222100000 0247899999999999864
No 236
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.75 E-value=5.5e-17 Score=129.23 Aligned_cols=155 Identities=17% Similarity=0.060 Sum_probs=97.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcc--c----------------------------------cCCCCCcceeEEE
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLV--Q----------------------------------HQPTQYPTSEELS 60 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~--~----------------------------------~~~t~~~~~~~~~ 60 (193)
.+..++|+++|++++|||||+.+|+...-. . ...|.+.....+.
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 577899999999999999999998643210 0 0012233334455
Q ss_pred eCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC--
Q 029437 61 IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAAS-- 138 (193)
Q Consensus 61 ~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~-- 138 (193)
.++..+.++||||+..+.......+..+|++++|+|+.+...-+ ..+.+. +..... ..|+|+++||+|+.....
T Consensus 104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~q-t~~~~~-l~~~lg--~~~iIvvvNKiD~~~~~~~~ 179 (474)
T PRK05124 104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQ-TRRHSF-IATLLG--IKHLVVAVNKMDLVDYSEEV 179 (474)
T ss_pred cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCcccc-chHHHH-HHHHhC--CCceEEEEEeeccccchhHH
Confidence 66789999999999988665555678999999999997652111 111111 111111 247899999999974221
Q ss_pred HHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhH
Q 029437 139 EEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDG 184 (193)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el 184 (193)
.+++.+++..... .. ......+++++||++|.|++++
T Consensus 180 ~~~i~~~l~~~~~--~~-------~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 180 FERIREDYLTFAE--QL-------PGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHHHHHHH--hc-------CCCCCceEEEEEeecCCCcccc
Confidence 2233333321000 00 0002468999999999999763
No 237
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.74 E-value=5.7e-17 Score=128.19 Aligned_cols=154 Identities=15% Similarity=0.055 Sum_probs=99.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCc--c--------------------------------ccCCCCCcceeEEEeC
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERL--V--------------------------------QHQPTQYPTSEELSIG 62 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~--~--------------------------------~~~~t~~~~~~~~~~~ 62 (193)
.+.+++|+++|+.++|||||+.+|+...- . ....|.......+.++
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~ 83 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence 46789999999999999999988853110 0 0112333344556667
Q ss_pred CEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhH-------HHHHHHHHHHHcCCCCCCCc-EEEEEeCCCCC
Q 029437 63 KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERF-------AESKKELDALLSDEALANVP-FLVLGNKIDIP 134 (193)
Q Consensus 63 ~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~-------~~~~~~~~~~~~~~~~~~~p-viiv~nK~D~~ 134 (193)
+..++++|+||+..|...+...+..+|++++|+|+.+.. + .+..+.+... . ..++| +|+++||+|+.
T Consensus 84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~-~e~g~~~~~qT~eh~~~~-~---~~gi~~iIV~vNKmD~~ 158 (447)
T PLN00043 84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGG-FEAGISKDGQTREHALLA-F---TLGVKQMICCCNKMDAT 158 (447)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCc-eecccCCCchHHHHHHHH-H---HcCCCcEEEEEEcccCC
Confidence 889999999999999888888889999999999998631 2 1222322222 1 13664 68899999986
Q ss_pred CC-CC---HHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhh
Q 029437 135 YA-AS---EEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGD 183 (193)
Q Consensus 135 ~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e 183 (193)
.. .. .+++.+++.....+.... ...++++++||.+|.|+.+
T Consensus 159 ~~~~~~~~~~~i~~ei~~~l~~~g~~--------~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 159 TPKYSKARYDEIVKEVSSYLKKVGYN--------PDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred chhhhHHHHHHHHHHHHHHHHHcCCC--------cccceEEEEeccccccccc
Confidence 21 11 222333332111000000 0236899999999999853
No 238
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=1.3e-17 Score=113.52 Aligned_cols=155 Identities=19% Similarity=0.318 Sum_probs=125.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcceeEEEeC----CEEEEEEEcCChhhhHhhHHhhcccCCEEEE
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTSEELSIG----KIKFKAFDLGGHQIARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~~----~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~ 93 (193)
..++++++|+.|.||||+.+++..++|.. ..+|.+...+...+. .+++..|||.|++.+......++-+..+.++
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAii 88 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAII 88 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEE
Confidence 56899999999999999999999999987 556888877766543 3899999999999998888888888899999
Q ss_pred EEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEe
Q 029437 94 LVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMC 173 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
++|+...-++.++..|.+++.... .++|+++++||.|........ ....+ .....+.+++.
T Consensus 89 mFdVtsr~t~~n~~rwhrd~~rv~--~NiPiv~cGNKvDi~~r~~k~-----k~v~~------------~rkknl~y~~i 149 (216)
T KOG0096|consen 89 MFDVTSRFTYKNVPRWHRDLVRVR--ENIPIVLCGNKVDIKARKVKA-----KPVSF------------HRKKNLQYYEI 149 (216)
T ss_pred EeeeeehhhhhcchHHHHHHHHHh--cCCCeeeeccceecccccccc-----cccee------------eecccceeEEe
Confidence 999999999999999999997643 479999999999986322111 11111 01134678999
Q ss_pred eeecCCChhhHHHhhhhhc
Q 029437 174 SIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 174 Sa~~g~gv~el~~~i~~~~ 192 (193)
||+++.|.+.=|-|+.+++
T Consensus 150 Saksn~NfekPFl~LarKl 168 (216)
T KOG0096|consen 150 SAKSNYNFERPFLWLARKL 168 (216)
T ss_pred ecccccccccchHHHhhhh
Confidence 9999999999999987754
No 239
>CHL00071 tufA elongation factor Tu
Probab=99.73 E-value=1.4e-16 Score=125.19 Aligned_cols=151 Identities=17% Similarity=0.090 Sum_probs=95.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcc-------------------ccCCCCCcceeEEEeCCEEEEEEEcCChhhh
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLV-------------------QHQPTQYPTSEELSIGKIKFKAFDLGGHQIA 77 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~-------------------~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~ 77 (193)
.+..++|+++|++++|||||+++|++..-. ....|.......+..++..+.++||||+..+
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~ 88 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence 467799999999999999999999864110 0111233333344556778999999999888
Q ss_pred HhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCc-EEEEEeCCCCCCCCC-HHHHHHhhCCCccccCC
Q 029437 78 RRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVP-FLVLGNKIDIPYAAS-EEELRYHLGLSNFTTGK 155 (193)
Q Consensus 78 ~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~ 155 (193)
.......+..+|++++|+|+..... .+..+.+..... .++| +|+++||+|+..... .+.+.+++.........
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~~----~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~ 163 (409)
T CHL00071 89 VKNMITGAAQMDGAILVVSAADGPM-PQTKEHILLAKQ----VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDF 163 (409)
T ss_pred HHHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 7766777789999999999976422 223333333322 3678 778999999974222 12222222221100000
Q ss_pred CccccCCCCCcceEEEEeeeecCCC
Q 029437 156 GKVNLADSNVRPLEVFMCSIVRKMG 180 (193)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~Sa~~g~g 180 (193)
. ....+++++||.+|.+
T Consensus 164 -----~---~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 164 -----P---GDDIPIVSGSALLALE 180 (409)
T ss_pred -----C---CCcceEEEcchhhccc
Confidence 0 0236899999999864
No 240
>PRK13351 elongation factor G; Reviewed
Probab=99.73 E-value=1.5e-16 Score=132.48 Aligned_cols=114 Identities=20% Similarity=0.090 Sum_probs=87.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCc-------------c--------ccCCCCCcceeEEEeCCEEEEEEEcCChhh
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDERL-------------V--------QHQPTQYPTSEELSIGKIKFKAFDLGGHQI 76 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~-------------~--------~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~ 76 (193)
+...+|+|+|+.|+|||||++++....- . ....|.......+.+.+..+.+|||||+..
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d 85 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID 85 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH
Confidence 3456999999999999999999974210 0 123355556667888899999999999999
Q ss_pred hHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC
Q 029437 77 ARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA 136 (193)
Q Consensus 77 ~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~ 136 (193)
+.......++.+|++++|+|+++....+. ...+..... .++|+++++||+|+...
T Consensus 86 f~~~~~~~l~~aD~~ilVvd~~~~~~~~~-~~~~~~~~~----~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 86 FTGEVERSLRVLDGAVVVFDAVTGVQPQT-ETVWRQADR----YGIPRLIFINKMDRVGA 140 (687)
T ss_pred HHHHHHHHHHhCCEEEEEEeCCCCCCHHH-HHHHHHHHh----cCCCEEEEEECCCCCCC
Confidence 88888888999999999999988755433 233433322 37899999999999754
No 241
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.73 E-value=4.2e-17 Score=116.32 Aligned_cols=160 Identities=14% Similarity=0.169 Sum_probs=92.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCc---cee--EEEe-CCEEEEEEEcCChhhhH----h-hHHhhccc
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYP---TSE--ELSI-GKIKFKAFDLGGHQIAR----R-VWKDYYAK 87 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~---~~~--~~~~-~~~~~~~~D~~G~~~~~----~-~~~~~~~~ 87 (193)
+++|+++|++|+|||||+|++.+..... ..++.+. ... .+.. ....+.+|||||..... . +....+..
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 3689999999999999999999865432 1111111 111 1111 12368999999964321 1 12223567
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC---------HHHHHHhhCCCccccCCCcc
Q 029437 88 VDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAAS---------EEELRYHLGLSNFTTGKGKV 158 (193)
Q Consensus 88 ~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~---------~~~~~~~~~~~~~~~~~~~~ 158 (193)
+|.++++.+. . +......+...+.. .+.|+++|+||+|+..... .+++.+.+.....+.
T Consensus 81 ~d~~l~v~~~-~---~~~~d~~~~~~l~~---~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~----- 148 (197)
T cd04104 81 YDFFIIISST-R---FSSNDVKLAKAIQC---MGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLEN----- 148 (197)
T ss_pred cCEEEEEeCC-C---CCHHHHHHHHHHHH---hCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHH-----
Confidence 8998888543 2 33344333333333 2689999999999952111 222222222111100
Q ss_pred ccCCCCCcceEEEEeeee--cCCChhhHHHhhhhhc
Q 029437 159 NLADSNVRPLEVFMCSIV--RKMGYGDGFKWLSQYI 192 (193)
Q Consensus 159 ~~~~~~~~~~~~~~~Sa~--~g~gv~el~~~i~~~~ 192 (193)
+........+++.+|+. .+.|+..+.+.|...+
T Consensus 149 -~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l 183 (197)
T cd04104 149 -LQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDL 183 (197)
T ss_pred -HHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHh
Confidence 00111234579999998 6899999999887764
No 242
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.73 E-value=1.5e-16 Score=124.50 Aligned_cols=160 Identities=16% Similarity=0.108 Sum_probs=97.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCC-------cc------------ccCCCCCcceeEEEeCCEEEEEEEcCChhhh
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDER-------LV------------QHQPTQYPTSEELSIGKIKFKAFDLGGHQIA 77 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~-------~~------------~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~ 77 (193)
.+++++|+++|+.++|||||+++|++.. +. ....|.......+..++..+.+|||||++.|
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f 88 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence 4567999999999999999999997320 00 1222444444444456678999999999988
Q ss_pred HhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEE-EEEeCCCCCCCCC-HHHHHHhhCCCccccCC
Q 029437 78 RRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFL-VLGNKIDIPYAAS-EEELRYHLGLSNFTTGK 155 (193)
Q Consensus 78 ~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pvi-iv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~ 155 (193)
..........+|++++|+|+.+... .+..+.+..+.. .++|.+ +++||+|+.+... .+.+.+++.........
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~-~qt~e~l~~~~~----~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~ 163 (394)
T TIGR00485 89 VKNMITGAAQMDGAILVVSATDGPM-PQTREHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDF 163 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCC
Confidence 7666666678999999999987422 122233333322 266755 6899999974221 11122122111100000
Q ss_pred CccccCCCCCcceEEEEeeeecCC-C-------hhhHHHhhh
Q 029437 156 GKVNLADSNVRPLEVFMCSIVRKM-G-------YGDGFKWLS 189 (193)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~Sa~~g~-g-------v~el~~~i~ 189 (193)
....++++++||.+|. | +.++++.|.
T Consensus 164 --------~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~ 197 (394)
T TIGR00485 164 --------PGDDTPIIRGSALKALEGDAEWEAKILELMDAVD 197 (394)
T ss_pred --------CccCccEEECccccccccCCchhHhHHHHHHHHH
Confidence 0022689999999875 3 345555554
No 243
>PRK00049 elongation factor Tu; Reviewed
Probab=99.73 E-value=1.1e-16 Score=125.16 Aligned_cols=163 Identities=16% Similarity=0.107 Sum_probs=102.8
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhcCCcc-------------------ccCCCCCcceeEEEeCCEEEEEEEcCChhh
Q 029437 16 LWQKEAKILFLGLDNAGKTTLLHMLKDERLV-------------------QHQPTQYPTSEELSIGKIKFKAFDLGGHQI 76 (193)
Q Consensus 16 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~-------------------~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~ 76 (193)
..+.+++|+++|++++|||||+++|++.... ....|.......+..++..+.++||||+..
T Consensus 8 ~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~ 87 (396)
T PRK00049 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHAD 87 (396)
T ss_pred CCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHH
Confidence 4577899999999999999999999863110 111233333334444667899999999988
Q ss_pred hHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEE-EEEeCCCCCCCCC-HHHHHHhhCCCccccC
Q 029437 77 ARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFL-VLGNKIDIPYAAS-EEELRYHLGLSNFTTG 154 (193)
Q Consensus 77 ~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pvi-iv~nK~D~~~~~~-~~~~~~~~~~~~~~~~ 154 (193)
+.......+..+|++++|+|+.++.. .+..+.+..... .++|.+ +++||+|+..... .+.+.+++........
T Consensus 88 f~~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~~----~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~ 162 (396)
T PRK00049 88 YVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYD 162 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHHHH----cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcC
Confidence 87766677789999999999976522 222333333322 367876 6899999974211 1122222221110000
Q ss_pred CCccccCCCCCcceEEEEeeeecCC----------ChhhHHHhhhhh
Q 029437 155 KGKVNLADSNVRPLEVFMCSIVRKM----------GYGDGFKWLSQY 191 (193)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~Sa~~g~----------gv~el~~~i~~~ 191 (193)
. .....+++++||.+|. |+..+++.|...
T Consensus 163 ~--------~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~ 201 (396)
T PRK00049 163 F--------PGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSY 201 (396)
T ss_pred C--------CccCCcEEEeecccccCCCCcccccccHHHHHHHHHhc
Confidence 0 0023678999999875 466777777653
No 244
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=3.7e-17 Score=127.35 Aligned_cols=152 Identities=18% Similarity=0.134 Sum_probs=116.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcc------------------ccCCCCCcceeEEEeCC---EEEEEEEcCChhhhHhh
Q 029437 22 KILFLGLDNAGKTTLLHMLKDERLV------------------QHQPTQYPTSEELSIGK---IKFKAFDLGGHQIARRV 80 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~~~~~------------------~~~~t~~~~~~~~~~~~---~~~~~~D~~G~~~~~~~ 80 (193)
++.|+-+-.-|||||..+++...-. +...|+......+.+.+ +.++++|||||..|...
T Consensus 62 NfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs~E 141 (650)
T KOG0462|consen 62 NFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSGE 141 (650)
T ss_pred ceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccccce
Confidence 6889999999999999998643211 12234444555666666 89999999999999988
Q ss_pred HHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCcccc
Q 029437 81 WKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNL 160 (193)
Q Consensus 81 ~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (193)
....+..++++|+|+|++..-.-+....++..+- .+.-+|.|+||+|++.+ ++++...+...-+.
T Consensus 142 VsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe-----~~L~iIpVlNKIDlp~a-dpe~V~~q~~~lF~--------- 206 (650)
T KOG0462|consen 142 VSRSLAACDGALLVVDASQGVQAQTVANFYLAFE-----AGLAIIPVLNKIDLPSA-DPERVENQLFELFD--------- 206 (650)
T ss_pred ehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH-----cCCeEEEeeeccCCCCC-CHHHHHHHHHHHhc---------
Confidence 8888899999999999988766677777777763 37889999999999754 45554444432220
Q ss_pred CCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 161 ADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 161 ~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
....+++.+||++|.|+++++++|.+++
T Consensus 207 ----~~~~~~i~vSAK~G~~v~~lL~AII~rV 234 (650)
T KOG0462|consen 207 ----IPPAEVIYVSAKTGLNVEELLEAIIRRV 234 (650)
T ss_pred ----CCccceEEEEeccCccHHHHHHHHHhhC
Confidence 0235789999999999999999999876
No 245
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.73 E-value=1.3e-17 Score=120.09 Aligned_cols=178 Identities=20% Similarity=0.240 Sum_probs=113.6
Q ss_pred HhhCCCCCccEEEEEcCCCCCHHHHHHHHhcCCcc----ccCCCCCcceeEE----------------------------
Q 029437 12 ASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLV----QHQPTQYPTSEEL---------------------------- 59 (193)
Q Consensus 12 ~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~----~~~~t~~~~~~~~---------------------------- 59 (193)
+..+..++++.|+++|..||||||++.+|...-.. ++....++....+
T Consensus 11 ~a~~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGg 90 (366)
T KOG1532|consen 11 EASGAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGG 90 (366)
T ss_pred cccccccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcc
Confidence 34556778899999999999999999998533211 1111111111110
Q ss_pred ---------------------EeCCEEEEEEEcCChhhh------HhhHHhhc--ccCCEEEEEEECC---ChhhHHHHH
Q 029437 60 ---------------------SIGKIKFKAFDLGGHQIA------RRVWKDYY--AKVDAVVYLVDAY---DKERFAESK 107 (193)
Q Consensus 60 ---------------------~~~~~~~~~~D~~G~~~~------~~~~~~~~--~~~d~vl~v~d~~---~~~~~~~~~ 107 (193)
..+..++.++||||+-.. .....+.+ ....+++||+|.. ++.+|-...
T Consensus 91 I~TsLNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNM 170 (366)
T KOG1532|consen 91 IVTSLNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNM 170 (366)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHH
Confidence 011256899999998542 12222222 2457889999974 455565555
Q ss_pred HHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCcc----------cc-CCCccccCCCCCcceEEEEeeee
Q 029437 108 KELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNF----------TT-GKGKVNLADSNVRPLEVFMCSIV 176 (193)
Q Consensus 108 ~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~----------~~-~~~~~~~~~~~~~~~~~~~~Sa~ 176 (193)
-+...++.. .+.|.|++.||+|+....-..++...++.... .. .+.++.......+..+.+.+||.
T Consensus 171 lYAcSilyk---tklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~ 247 (366)
T KOG1532|consen 171 LYACSILYK---TKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSV 247 (366)
T ss_pred HHHHHHHHh---ccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecc
Confidence 555566554 68999999999999876655565555542211 11 22233333444567899999999
Q ss_pred cCCChhhHHHhhhhhc
Q 029437 177 RKMGYGDGFKWLSQYI 192 (193)
Q Consensus 177 ~g~gv~el~~~i~~~~ 192 (193)
+|.|.+++|.++.+.+
T Consensus 248 tG~G~ddf~~av~~~v 263 (366)
T KOG1532|consen 248 TGEGFDDFFTAVDESV 263 (366)
T ss_pred cCCcHHHHHHHHHHHH
Confidence 9999999999998764
No 246
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.72 E-value=1.4e-16 Score=131.37 Aligned_cols=153 Identities=16% Similarity=0.060 Sum_probs=96.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc------------------------------------cCCCCCcceeEEE
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ------------------------------------HQPTQYPTSEELS 60 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~------------------------------------~~~t~~~~~~~~~ 60 (193)
.+..++|+++|++++|||||+++|+...-.- ...|.+.....+.
T Consensus 21 ~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~ 100 (632)
T PRK05506 21 RKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA 100 (632)
T ss_pred CCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc
Confidence 4567899999999999999999987532110 0112233344556
Q ss_pred eCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCC--C
Q 029437 61 IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAA--S 138 (193)
Q Consensus 61 ~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~--~ 138 (193)
+++..+.++||||+..+...+...+..+|++++|+|+.+...- +..+.+.. +... ...|+++++||+|+.... .
T Consensus 101 ~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~-~t~e~~~~-~~~~--~~~~iivvvNK~D~~~~~~~~ 176 (632)
T PRK05506 101 TPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLT-QTRRHSFI-ASLL--GIRHVVLAVNKMDLVDYDQEV 176 (632)
T ss_pred cCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccc-cCHHHHHH-HHHh--CCCeEEEEEEecccccchhHH
Confidence 6678899999999998866566677899999999999765221 11111111 1111 235789999999997321 1
Q ss_pred HHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhh
Q 029437 139 EEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGD 183 (193)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e 183 (193)
.+++..++.... .. ......+++++||++|.|+++
T Consensus 177 ~~~i~~~i~~~~--~~--------~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 177 FDEIVADYRAFA--AK--------LGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHHHH--HH--------cCCCCccEEEEecccCCCccc
Confidence 222322221000 00 000235689999999999874
No 247
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.72 E-value=8.2e-17 Score=126.34 Aligned_cols=149 Identities=19% Similarity=0.096 Sum_probs=94.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc------------------------------------ccCCCCCcceeEEEeCCE
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDERLV------------------------------------QHQPTQYPTSEELSIGKI 64 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~~~------------------------------------~~~~t~~~~~~~~~~~~~ 64 (193)
++|+++|++++|||||+.+++...-. ....|.+.....+.+++.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 48999999999999999998532200 011133444555666778
Q ss_pred EEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC--HHHH
Q 029437 65 KFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAAS--EEEL 142 (193)
Q Consensus 65 ~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~--~~~~ 142 (193)
.+.++||||+..+...+...+..+|++++|+|+.....- +..+.+... ... ...++++++||+|+..... .+++
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~-qt~~~~~~~-~~~--~~~~iivviNK~D~~~~~~~~~~~i 156 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLE-QTRRHSYIA-SLL--GIRHVVLAVNKMDLVDYDEEVFENI 156 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcc-ccHHHHHHH-HHc--CCCcEEEEEEecccccchHHHHHHH
Confidence 999999999998876666678899999999999765321 111222211 111 1346899999999974221 1122
Q ss_pred HHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhh
Q 029437 143 RYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGD 183 (193)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e 183 (193)
.+.+.... . .. .....+++++||++|.|+++
T Consensus 157 ~~~~~~~~-~-~~--------~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 157 KKDYLAFA-E-QL--------GFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHH-H-Hc--------CCCCccEEEeecccCCCCcc
Confidence 22221100 0 00 00235799999999999975
No 248
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.72 E-value=2.6e-19 Score=121.36 Aligned_cols=161 Identities=18% Similarity=0.155 Sum_probs=125.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCc--ceeEEEeCC---EEEEEEEcCChhhhHhhHHhhcccCCE
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYP--TSEELSIGK---IKFKAFDLGGHQIARRVWKDYYAKVDA 90 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~---~~~~~~D~~G~~~~~~~~~~~~~~~d~ 90 (193)
+.+-++++|+|..|+|||+++.++....|.. +..|++. ....+.+++ +++.+||..|++++..+..-+++.+++
T Consensus 22 r~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~ 101 (229)
T KOG4423|consen 22 REHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHG 101 (229)
T ss_pred hhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcc
Confidence 3567899999999999999999998887765 3344443 333344443 578999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHcC---CCCCCCcEEEEEeCCCCCCCCCHH--HHHHhhCCCccccCCCccccCCCCC
Q 029437 91 VVYLVDAYDKERFAESKKELDALLSD---EALANVPFLVLGNKIDIPYAASEE--ELRYHLGLSNFTTGKGKVNLADSNV 165 (193)
Q Consensus 91 vl~v~d~~~~~~~~~~~~~~~~~~~~---~~~~~~pviiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (193)
..+|||+++..+|+....|..++... ......|++++.||+|+......+ ...+++....
T Consensus 102 ~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~ken--------------- 166 (229)
T KOG4423|consen 102 AFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKEN--------------- 166 (229)
T ss_pred eEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhcc---------------
Confidence 99999999999999999998887543 344578999999999997433222 3444444333
Q ss_pred cceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 166 RPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 166 ~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
....++++|+|.+.+++|.-+.+++++
T Consensus 167 gf~gwtets~Kenkni~Ea~r~lVe~~ 193 (229)
T KOG4423|consen 167 GFEGWTETSAKENKNIPEAQRELVEKI 193 (229)
T ss_pred CccceeeeccccccChhHHHHHHHHHH
Confidence 557799999999999999988887653
No 249
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.71 E-value=2.2e-16 Score=124.67 Aligned_cols=163 Identities=18% Similarity=0.124 Sum_probs=103.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc------cCCCC--Cccee---------------EE----------E---
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ------HQPTQ--YPTSE---------------EL----------S--- 60 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~------~~~t~--~~~~~---------------~~----------~--- 60 (193)
.+.+++|+++|+...|||||+.+|++..... ...|. ++... .. +
T Consensus 31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (460)
T PTZ00327 31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG 110 (460)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence 4678999999999999999999998654221 11111 11100 00 0
Q ss_pred ---eCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCC
Q 029437 61 ---IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAA 137 (193)
Q Consensus 61 ---~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~ 137 (193)
.....+.++|+||++.+...+...+..+|++++|+|+.++....+..+.+. ++... .-.|+|+++||+|+.+..
T Consensus 111 ~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~-i~~~l--gi~~iIVvlNKiDlv~~~ 187 (460)
T PTZ00327 111 HKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLA-AVEIM--KLKHIIILQNKIDLVKEA 187 (460)
T ss_pred ccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHH-HHHHc--CCCcEEEEEecccccCHH
Confidence 002468999999999987776777789999999999986411112222222 22221 134689999999997433
Q ss_pred CHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 138 SEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
..++..+++.... .. ......+++++||++|.|+++|++.|...+
T Consensus 188 ~~~~~~~ei~~~l-~~---------~~~~~~~iipVSA~~G~nI~~Ll~~L~~~l 232 (460)
T PTZ00327 188 QAQDQYEEIRNFV-KG---------TIADNAPIIPISAQLKYNIDVVLEYICTQI 232 (460)
T ss_pred HHHHHHHHHHHHH-Hh---------hccCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence 3223222222111 00 001346899999999999999999998644
No 250
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.71 E-value=6.3e-16 Score=101.08 Aligned_cols=103 Identities=26% Similarity=0.415 Sum_probs=71.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcccc----CCCCCcceeEEEeCCEEEEEEEcCChhhh---------HhhHHhhcccC
Q 029437 22 KILFLGLDNAGKTTLLHMLKDERLVQH----QPTQYPTSEELSIGKIKFKAFDLGGHQIA---------RRVWKDYYAKV 88 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~D~~G~~~~---------~~~~~~~~~~~ 88 (193)
+|+|+|.+|+|||||+|+|++...... ..|.......+.+.+..+.++||||.... .......+..+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 80 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKS 80 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTE
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHC
Confidence 689999999999999999998653322 22444445566788889999999995321 11223334889
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeC
Q 029437 89 DAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNK 130 (193)
Q Consensus 89 d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK 130 (193)
|++++|+|+.++.. ......+..+ + .+.|+++|+||
T Consensus 81 d~ii~vv~~~~~~~-~~~~~~~~~l-~----~~~~~i~v~NK 116 (116)
T PF01926_consen 81 DLIIYVVDASNPIT-EDDKNILREL-K----NKKPIILVLNK 116 (116)
T ss_dssp SEEEEEEETTSHSH-HHHHHHHHHH-H----TTSEEEEEEES
T ss_pred CEEEEEEECCCCCC-HHHHHHHHHH-h----cCCCEEEEEcC
Confidence 99999999877422 2222333333 2 58999999998
No 251
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.71 E-value=6.9e-16 Score=118.24 Aligned_cols=134 Identities=18% Similarity=0.286 Sum_probs=97.2
Q ss_pred CCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCC----------hhhHHHHHHHHHHHHcCCCCC
Q 029437 51 TQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYD----------KERFAESKKELDALLSDEALA 120 (193)
Q Consensus 51 t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~ 120 (193)
|.|.....+.+++..+.+||++|+...+..|.+++.+++++++|+|+++ ...+.+....+..+++.....
T Consensus 171 T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~ 250 (342)
T smart00275 171 TTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFA 250 (342)
T ss_pred ccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCcccc
Confidence 4455666677788899999999999999999999999999999999986 346788888888998887778
Q ss_pred CCcEEEEEeCCCCCC----CCC-------------HHHHHHhhCCCccccCCCccccCCC-CCcceEEEEeeeecCCChh
Q 029437 121 NVPFLVLGNKIDIPY----AAS-------------EEELRYHLGLSNFTTGKGKVNLADS-NVRPLEVFMCSIVRKMGYG 182 (193)
Q Consensus 121 ~~pviiv~nK~D~~~----~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~g~gv~ 182 (193)
++|+++++||.|+.. ... .++..+.+...+.. +... ..+.+-.+.++|..-.++.
T Consensus 251 ~~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~-------~~~~~~~r~~y~h~t~a~Dt~~~~ 323 (342)
T smart00275 251 NTSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLR-------LNRNSSRKSIYHHFTCATDTRNIR 323 (342)
T ss_pred CCcEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHH-------hccCCCCceEEEEEeeecccHHHH
Confidence 999999999999761 111 11111111111110 1110 1144667789999999999
Q ss_pred hHHHhhhhh
Q 029437 183 DGFKWLSQY 191 (193)
Q Consensus 183 el~~~i~~~ 191 (193)
.+|+.+.+.
T Consensus 324 ~v~~~v~~~ 332 (342)
T smart00275 324 VVFDAVKDI 332 (342)
T ss_pred HHHHHHHHH
Confidence 999877654
No 252
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.71 E-value=7.2e-16 Score=116.70 Aligned_cols=76 Identities=22% Similarity=0.233 Sum_probs=53.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCccc-c--CCCCCcceeEEEe------------------------CCEEEEEEEcCCh-
Q 029437 23 ILFLGLDNAGKTTLLHMLKDERLVQ-H--QPTQYPTSEELSI------------------------GKIKFKAFDLGGH- 74 (193)
Q Consensus 23 i~v~G~~~~GKssl~~~l~~~~~~~-~--~~t~~~~~~~~~~------------------------~~~~~~~~D~~G~- 74 (193)
|+++|.||+|||||++++++..+.. . ..|..++.+...+ ..+.+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 5799999999999999999876421 1 1233444332221 2368999999997
Q ss_pred ---hhhHhhH---HhhcccCCEEEEEEECC
Q 029437 75 ---QIARRVW---KDYYAKVDAVVYLVDAY 98 (193)
Q Consensus 75 ---~~~~~~~---~~~~~~~d~vl~v~d~~ 98 (193)
.....+. ...++.+|++++|+|+.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 3333333 33578999999999996
No 253
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.70 E-value=3.6e-16 Score=125.71 Aligned_cols=125 Identities=18% Similarity=0.206 Sum_probs=84.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC-cccc------------------------CCCCCcceeEEEeCCEEEEEEEcCC
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDER-LVQH------------------------QPTQYPTSEELSIGKIKFKAFDLGG 73 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~------------------------~~t~~~~~~~~~~~~~~~~~~D~~G 73 (193)
+..+|+|+|++|+|||||+++++... .... ..+.......+.+.+..+++|||||
T Consensus 10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG 89 (527)
T TIGR00503 10 KRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPG 89 (527)
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCC
Confidence 44599999999999999999985311 1100 0111223355677889999999999
Q ss_pred hhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC---HHHHHHhhCC
Q 029437 74 HQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAAS---EEELRYHLGL 148 (193)
Q Consensus 74 ~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~---~~~~~~~~~~ 148 (193)
+..+.......+..+|++++|+|+++.-. .....++... . ..++|+++++||+|+..... .+++.+.++.
T Consensus 90 ~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~-~---~~~~PiivviNKiD~~~~~~~~ll~~i~~~l~~ 162 (527)
T TIGR00503 90 HEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVT-R---LRDTPIFTFMNKLDRDIRDPLELLDEVENELKI 162 (527)
T ss_pred hhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHH-H---hcCCCEEEEEECccccCCCHHHHHHHHHHHhCC
Confidence 98887766777899999999999987421 1223333322 2 24789999999999864321 2334555543
No 254
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=4.6e-16 Score=120.11 Aligned_cols=166 Identities=18% Similarity=0.159 Sum_probs=109.8
Q ss_pred hCCCCCccEEEEEcCCCCCHHHHHHHHhcCCccccC----CCCCcceeEEEeCCEEEEEEEcCChhhhH---------hh
Q 029437 14 LGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQ----PTQYPTSEELSIGKIKFKAFDLGGHQIAR---------RV 80 (193)
Q Consensus 14 ~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~D~~G~~~~~---------~~ 80 (193)
+...+..+.|+|+|+||+|||||+|+|.+.+-.-.. .|.+.-...+...+.++.+.||+|..+-. .-
T Consensus 262 ~e~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~r 341 (531)
T KOG1191|consen 262 IERLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIER 341 (531)
T ss_pred HHHhhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHH
Confidence 334567799999999999999999999998865433 36666777888999999999999965511 11
Q ss_pred HHhhcccCCEEEEEEEC--CChhhHHHHHHHHHHHH-----cCCCCCCCcEEEEEeCCCCCCCCCHHH--HHHhhCCCcc
Q 029437 81 WKDYYAKVDAVVYLVDA--YDKERFAESKKELDALL-----SDEALANVPFLVLGNKIDIPYAASEEE--LRYHLGLSNF 151 (193)
Q Consensus 81 ~~~~~~~~d~vl~v~d~--~~~~~~~~~~~~~~~~~-----~~~~~~~~pviiv~nK~D~~~~~~~~~--~~~~~~~~~~ 151 (193)
....+..+|++++|+|+ .+.++-..+.+.+...- ..+.....|++++.||.|+....+... .......
T Consensus 342 A~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~--- 418 (531)
T KOG1191|consen 342 ARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSA--- 418 (531)
T ss_pred HHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceecccc---
Confidence 13345789999999999 33333333333333331 112335689999999999985422110 0000000
Q ss_pred ccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 152 TTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
.... ......++|+++++|+++|.+.|.+.+
T Consensus 419 ---~~~~-------~~~i~~~vs~~tkeg~~~L~~all~~~ 449 (531)
T KOG1191|consen 419 ---EGRS-------VFPIVVEVSCTTKEGCERLSTALLNIV 449 (531)
T ss_pred ---ccCc-------ccceEEEeeechhhhHHHHHHHHHHHH
Confidence 0000 112345699999999999999887653
No 255
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.70 E-value=5.6e-16 Score=111.88 Aligned_cols=108 Identities=21% Similarity=0.143 Sum_probs=78.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCc--c-----------------ccCCCCCcceeEEEeC----------CEEEEEEEcC
Q 029437 22 KILFLGLDNAGKTTLLHMLKDERL--V-----------------QHQPTQYPTSEELSIG----------KIKFKAFDLG 72 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~~~~--~-----------------~~~~t~~~~~~~~~~~----------~~~~~~~D~~ 72 (193)
+|+++|+.++|||||+.+|....- . ....|.......+.+. +..+++||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 689999999999999999864321 0 0111222232233333 6789999999
Q ss_pred ChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCC
Q 029437 73 GHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIP 134 (193)
Q Consensus 73 G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~ 134 (193)
|+..+.......+..+|++++|+|+.+....+ ....+..... .++|+++++||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~-t~~~l~~~~~----~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQ-TETVLRQALK----ERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHH-HHHHHHHHHH----cCCCEEEEEECCCcc
Confidence 99999888888899999999999998865433 2334444432 368999999999986
No 256
>PLN03127 Elongation factor Tu; Provisional
Probab=99.70 E-value=1.3e-15 Score=120.40 Aligned_cols=163 Identities=18% Similarity=0.139 Sum_probs=100.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcC------Cc--c-----------ccCCCCCcceeEEEeCCEEEEEEEcCChhhh
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDE------RL--V-----------QHQPTQYPTSEELSIGKIKFKAFDLGGHQIA 77 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~------~~--~-----------~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~ 77 (193)
.+.+++|+++|+.++|||||+++|.+. .. . ....|.+.....+..++..+.++||||+..+
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f 137 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY 137 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch
Confidence 568899999999999999999999622 10 0 0122444444455556778999999999887
Q ss_pred HhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCc-EEEEEeCCCCCCCCCH-HHHHHhhCCCccccCC
Q 029437 78 RRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVP-FLVLGNKIDIPYAASE-EELRYHLGLSNFTTGK 155 (193)
Q Consensus 78 ~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~ 155 (193)
..........+|++++|+|+.+... .+..+.+..... .++| +|+++||+|+...... +.+.+++.... .. .
T Consensus 138 ~~~~~~g~~~aD~allVVda~~g~~-~qt~e~l~~~~~----~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l-~~-~ 210 (447)
T PLN03127 138 VKNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQ----VGVPSLVVFLNKVDVVDDEELLELVEMELRELL-SF-Y 210 (447)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHHH----cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHH-HH-h
Confidence 6655556678999999999976532 122233332221 3688 5789999999742111 11221211110 00 0
Q ss_pred CccccCCCCCcceEEEEeeee---cCCC-------hhhHHHhhhhhc
Q 029437 156 GKVNLADSNVRPLEVFMCSIV---RKMG-------YGDGFKWLSQYI 192 (193)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~Sa~---~g~g-------v~el~~~i~~~~ 192 (193)
.. ....++++++||. +|.| +.+|+++|.+.+
T Consensus 211 ---~~---~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l 251 (447)
T PLN03127 211 ---KF---PGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI 251 (447)
T ss_pred ---CC---CCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhC
Confidence 00 0023677888775 4555 678888876543
No 257
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.69 E-value=3.3e-17 Score=118.31 Aligned_cols=173 Identities=18% Similarity=0.177 Sum_probs=111.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccccC---CCCCc-ceeEEEeCCEEEEEEEcCChhh-------hHhhHHhhc
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQ---PTQYP-TSEELSIGKIKFKAFDLGGHQI-------ARRVWKDYY 85 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~---~t~~~-~~~~~~~~~~~~~~~D~~G~~~-------~~~~~~~~~ 85 (193)
.+.+++|+++|..|+||||++|+++.++..+.. .+..+ ......+....+.+||+||... ++.....++
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l 115 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYRDYL 115 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHHHHHHHh
Confidence 457899999999999999999999976544322 22222 2223345557899999999543 667778888
Q ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCcccc--CCCccccCCC
Q 029437 86 AKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTT--GKGKVNLADS 163 (193)
Q Consensus 86 ~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 163 (193)
+..|.++++.++.|+. +.....+++++.... -+.++++++|.+|.......++.......+.++. +..-..+-+.
T Consensus 116 ~~~DLvL~l~~~~dra-L~~d~~f~~dVi~~~--~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~ 192 (296)
T COG3596 116 PKLDLVLWLIKADDRA-LGTDEDFLRDVIILG--LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRL 192 (296)
T ss_pred hhccEEEEeccCCCcc-ccCCHHHHHHHHHhc--cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999885 445556677765432 2589999999999873321111111111100000 0000000001
Q ss_pred CCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 164 NVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 164 ~~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
...-.+++..|+..+.|++++...+...+
T Consensus 193 ~q~V~pV~~~~~r~~wgl~~l~~ali~~l 221 (296)
T COG3596 193 FQEVKPVVAVSGRLPWGLKELVRALITAL 221 (296)
T ss_pred HhhcCCeEEeccccCccHHHHHHHHHHhC
Confidence 11234677788899999999999988764
No 258
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.69 E-value=6.4e-16 Score=113.87 Aligned_cols=151 Identities=20% Similarity=0.251 Sum_probs=105.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcc--c-cCCCCCcceeEEEeCCEEEEEEEcCChhhhH-------hhHHhhcccCC
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKDERLV--Q-HQPTQYPTSEELSIGKIKFKAFDLGGHQIAR-------RVWKDYYAKVD 89 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~~~~~--~-~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~-------~~~~~~~~~~d 89 (193)
..+++++|+|++|||||++++++.+.. . ...|..+..+.+.+++..+++.|+||.-... ...-...+.||
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~AD 142 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNAD 142 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeeccCC
Confidence 458999999999999999999987632 2 2347777888999999999999999853321 22334568999
Q ss_pred EEEEEEECCChhh-HHHHHHHHHHH----------------------------------------HcCCC----------
Q 029437 90 AVVYLVDAYDKER-FAESKKELDAL----------------------------------------LSDEA---------- 118 (193)
Q Consensus 90 ~vl~v~d~~~~~~-~~~~~~~~~~~----------------------------------------~~~~~---------- 118 (193)
++++|+|+....+ .+.+.+.+... +.++.
T Consensus 143 lIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir~ 222 (365)
T COG1163 143 LIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIRE 222 (365)
T ss_pred EEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEEec
Confidence 9999999985543 33333322221 11100
Q ss_pred --------------CCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhH
Q 029437 119 --------------LANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDG 184 (193)
Q Consensus 119 --------------~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el 184 (193)
..-+|.+.+.||.|+....+.+.+.+. .+++++||.++.|++++
T Consensus 223 dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e~~~~l~~~----------------------~~~v~isa~~~~nld~L 280 (365)
T COG1163 223 DVTLDDLIDALEGNRVYKPALYVVNKIDLPGLEELERLARK----------------------PNSVPISAKKGINLDEL 280 (365)
T ss_pred CCcHHHHHHHHhhcceeeeeEEEEecccccCHHHHHHHHhc----------------------cceEEEecccCCCHHHH
Confidence 112899999999999753222222221 25789999999999999
Q ss_pred HHhhhhhc
Q 029437 185 FKWLSQYI 192 (193)
Q Consensus 185 ~~~i~~~~ 192 (193)
.+.|.+.+
T Consensus 281 ~e~i~~~L 288 (365)
T COG1163 281 KERIWDVL 288 (365)
T ss_pred HHHHHHhh
Confidence 99998765
No 259
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.69 E-value=6.5e-17 Score=116.77 Aligned_cols=162 Identities=17% Similarity=0.267 Sum_probs=95.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc----cCCCCCcceeEEE-eCCEEEEEEEcCChhhhHh-----hHHhhcccCCEE
Q 029437 22 KILFLGLDNAGKTTLLHMLKDERLVQ----HQPTQYPTSEELS-IGKIKFKAFDLGGHQIARR-----VWKDYYAKVDAV 91 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~-~~~~~~~~~D~~G~~~~~~-----~~~~~~~~~d~v 91 (193)
||+++|++||||||+.+.+..+-.+. ..+|.......+. .+...+++||+||+..+.. .....++.++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~L 80 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVL 80 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEE
Confidence 79999999999999999998765432 3467777777776 4568999999999875533 346678999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHcC--CCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceE
Q 029437 92 VYLVDAYDKERFAESKKELDALLSD--EALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLE 169 (193)
Q Consensus 92 l~v~d~~~~~~~~~~~~~~~~~~~~--~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
|||+|+.+.+ +.+....+...+.. ...+++.+-++++|+|+.......+.............. +.....+.
T Consensus 81 IyV~D~qs~~-~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~------~~~~~~~~ 153 (232)
T PF04670_consen 81 IYVFDAQSDD-YDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELE------DLGIEDIT 153 (232)
T ss_dssp EEEEETT-ST-CHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHH------HTT-TSEE
T ss_pred EEEEEccccc-HHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhh------hccccceE
Confidence 9999998443 22333333332221 234799999999999997543333332222211100000 00001467
Q ss_pred EEEeeeecCCChhhHHHhhhhh
Q 029437 170 VFMCSIVRKMGYGDGFKWLSQY 191 (193)
Q Consensus 170 ~~~~Sa~~g~gv~el~~~i~~~ 191 (193)
++.||--. +.+-+.|..|.+.
T Consensus 154 ~~~TSI~D-~Sly~A~S~Ivq~ 174 (232)
T PF04670_consen 154 FFLTSIWD-ESLYEAWSKIVQK 174 (232)
T ss_dssp EEEE-TTS-THHHHHHHHHHHT
T ss_pred EEeccCcC-cHHHHHHHHHHHH
Confidence 88887766 5676767666654
No 260
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.69 E-value=1e-15 Score=119.53 Aligned_cols=159 Identities=21% Similarity=0.162 Sum_probs=115.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccccC---CCCCcceeEEEe-CCEEEEEEEcCChhhhHhhHHhhcccCCEEEE
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQ---PTQYPTSEELSI-GKIKFKAFDLGGHQIARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~---~t~~~~~~~~~~-~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~ 93 (193)
....-+-|+|+..-|||||+.++-........ .|..+....+.. ++.++++.|||||..|..|+.....-+|++++
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVL 230 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSGKSITFLDTPGHAAFSAMRARGANVTDIVVL 230 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCCCEEEEecCCcHHHHHHHHhccCccccEEEE
Confidence 35667999999999999999999776654322 244443333332 56799999999999999999998889999999
Q ss_pred EEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEe
Q 029437 94 LVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMC 173 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
|+.+.|.-.-+. .+.+.+....++|+|+.+||+|.+.+ +++....++-...+.- ..+...+.++++
T Consensus 231 VVAadDGVmpQT-----~EaIkhAk~A~VpiVvAinKiDkp~a-~pekv~~eL~~~gi~~--------E~~GGdVQvipi 296 (683)
T KOG1145|consen 231 VVAADDGVMPQT-----LEAIKHAKSANVPIVVAINKIDKPGA-NPEKVKRELLSQGIVV--------EDLGGDVQVIPI 296 (683)
T ss_pred EEEccCCccHhH-----HHHHHHHHhcCCCEEEEEeccCCCCC-CHHHHHHHHHHcCccH--------HHcCCceeEEEe
Confidence 999988532211 11223344469999999999998644 5666665554333211 223356789999
Q ss_pred eeecCCChhhHHHhhhh
Q 029437 174 SIVRKMGYGDGFKWLSQ 190 (193)
Q Consensus 174 Sa~~g~gv~el~~~i~~ 190 (193)
||++|.|++.|-+.|.-
T Consensus 297 SAl~g~nl~~L~eaill 313 (683)
T KOG1145|consen 297 SALTGENLDLLEEAILL 313 (683)
T ss_pred ecccCCChHHHHHHHHH
Confidence 99999999999988763
No 261
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.68 E-value=1.3e-15 Score=108.64 Aligned_cols=163 Identities=12% Similarity=0.022 Sum_probs=98.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcccc-----CCCCCcceeEEEeCCEEEEEEEcCChhhh-------HhhH----Hhh
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDERLVQH-----QPTQYPTSEELSIGKIKFKAFDLGGHQIA-------RRVW----KDY 84 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~~~~~-----~~t~~~~~~~~~~~~~~~~~~D~~G~~~~-------~~~~----~~~ 84 (193)
.+|+++|.+|+|||||+|++++.+.... ..|.........+.+..+.++||||.... .... ...
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~ 80 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS 80 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence 4799999999999999999998864321 23556666677778899999999995332 1111 122
Q ss_pred cccCCEEEEEEECCCh-hhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCC
Q 029437 85 YAKVDAVVYLVDAYDK-ERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADS 163 (193)
Q Consensus 85 ~~~~d~vl~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (193)
...+|++++|+++.+. .....+.+.+...+.. ..-.++++++|+.|.......++......... +. +.+.
T Consensus 81 ~~g~~~illVi~~~~~t~~d~~~l~~l~~~fg~--~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l-~~------l~~~ 151 (196)
T cd01852 81 APGPHAFLLVVPLGRFTEEEEQAVETLQELFGE--KVLDHTIVLFTRGDDLEGGTLEDYLENSCEAL-KR------LLEK 151 (196)
T ss_pred CCCCEEEEEEEECCCcCHHHHHHHHHHHHHhCh--HhHhcEEEEEECccccCCCcHHHHHHhccHHH-HH------HHHH
Confidence 3578999999998762 1223333444444321 11358899999999875544444322221111 00 0000
Q ss_pred CCcceEEE-Ee--eeecCCChhhHHHhhhhhc
Q 029437 164 NVRPLEVF-MC--SIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 164 ~~~~~~~~-~~--Sa~~g~gv~el~~~i~~~~ 192 (193)
+...+..| .. |+..+.++++|++.|.+.+
T Consensus 152 c~~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~ 183 (196)
T cd01852 152 CGGRYVAFNNKAKGEEQEQQVKELLAKVESMV 183 (196)
T ss_pred hCCeEEEEeCCCCcchhHHHHHHHHHHHHHHH
Confidence 00111111 11 3667889999999988754
No 262
>PRK12739 elongation factor G; Reviewed
Probab=99.67 E-value=3.2e-15 Score=124.45 Aligned_cols=113 Identities=20% Similarity=0.088 Sum_probs=84.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC-----c----------------cccCCCCCcceeEEEeCCEEEEEEEcCChhhh
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDER-----L----------------VQHQPTQYPTSEELSIGKIKFKAFDLGGHQIA 77 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~-----~----------------~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~ 77 (193)
+-.+|+|+|++++|||||+++|.... . .....|.......+.+++..++++||||+..+
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f 86 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVDF 86 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHHH
Confidence 44589999999999999999996421 0 01223555566778889999999999999888
Q ss_pred HhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC
Q 029437 78 RRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA 136 (193)
Q Consensus 78 ~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~ 136 (193)
.......+..+|++++|+|+.+.... +....+..... .++|+++++||+|+...
T Consensus 87 ~~e~~~al~~~D~~ilVvDa~~g~~~-qt~~i~~~~~~----~~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 87 TIEVERSLRVLDGAVAVFDAVSGVEP-QSETVWRQADK----YGVPRIVFVNKMDRIGA 140 (691)
T ss_pred HHHHHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH----cCCCEEEEEECCCCCCC
Confidence 77777888999999999999876332 22233333322 47899999999999854
No 263
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.67 E-value=3.7e-16 Score=120.17 Aligned_cols=149 Identities=19% Similarity=0.183 Sum_probs=111.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcc------------------ccCCCCCcceeEEEe-----CCEEEEEEEcCChhhhH
Q 029437 22 KILFLGLDNAGKTTLLHMLKDERLV------------------QHQPTQYPTSEELSI-----GKIKFKAFDLGGHQIAR 78 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~~~~~------------------~~~~t~~~~~~~~~~-----~~~~~~~~D~~G~~~~~ 78 (193)
+.-++-+-.-|||||..++....-. +...|+..+...+.+ ..+.++++|||||..|.
T Consensus 11 NFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFs 90 (603)
T COG0481 11 NFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS 90 (603)
T ss_pred ceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceE
Confidence 4667788899999999998533210 122344444444444 34889999999999887
Q ss_pred hhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC---HHHHHHhhCCCccccCC
Q 029437 79 RVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAAS---EEELRYHLGLSNFTTGK 155 (193)
Q Consensus 79 ~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~ 155 (193)
-.....+..|.+.++|+|++..-.-+.+.+.+..+- .+.-++.|+||+|++.+.. ..++.+.+++..
T Consensus 91 YEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle-----~~LeIiPViNKIDLP~Adpervk~eIe~~iGid~----- 160 (603)
T COG0481 91 YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPAADPERVKQEIEDIIGIDA----- 160 (603)
T ss_pred EEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH-----cCcEEEEeeecccCCCCCHHHHHHHHHHHhCCCc-----
Confidence 766677788999999999998766667777777663 3788999999999974432 234566666555
Q ss_pred CccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 156 GKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
.+.+.||||+|.|++++++.|.+++
T Consensus 161 ------------~dav~~SAKtG~gI~~iLe~Iv~~i 185 (603)
T COG0481 161 ------------SDAVLVSAKTGIGIEDVLEAIVEKI 185 (603)
T ss_pred ------------chheeEecccCCCHHHHHHHHHhhC
Confidence 5688999999999999999999876
No 264
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.66 E-value=2.2e-15 Score=114.57 Aligned_cols=136 Identities=20% Similarity=0.303 Sum_probs=98.5
Q ss_pred CCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCCh----------hhHHHHHHHHHHHHcCCCC
Q 029437 50 PTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDK----------ERFAESKKELDALLSDEAL 119 (193)
Q Consensus 50 ~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~----------~~~~~~~~~~~~~~~~~~~ 119 (193)
||.+.....+.+++..+.+||++|+...+..|.+++.+++++++|+|+++- ..+.+....+..+++....
T Consensus 147 ~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~ 226 (317)
T cd00066 147 KTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWF 226 (317)
T ss_pred ccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccc
Confidence 344566666777889999999999999999999999999999999999873 5677888888888887777
Q ss_pred CCCcEEEEEeCCCCCCC------------------CCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCCh
Q 029437 120 ANVPFLVLGNKIDIPYA------------------ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGY 181 (193)
Q Consensus 120 ~~~pviiv~nK~D~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv 181 (193)
.++|+++++||.|+... .+.++..+.+...+.. +.+...+.+-...++|..-.++
T Consensus 227 ~~~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~-------~~~~~~~~~~~~~t~a~Dt~~i 299 (317)
T cd00066 227 ANTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLD-------LNRNPNKEIYPHFTCATDTENI 299 (317)
T ss_pred cCCCEEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHH-------hhcCCCCeEEEEeccccchHHH
Confidence 89999999999996511 1111111111111110 1111124566778999999999
Q ss_pred hhHHHhhhhhc
Q 029437 182 GDGFKWLSQYI 192 (193)
Q Consensus 182 ~el~~~i~~~~ 192 (193)
+.+|+.+.+.+
T Consensus 300 ~~vf~~v~~~i 310 (317)
T cd00066 300 RFVFDAVKDII 310 (317)
T ss_pred HHHHHHHHHHH
Confidence 99998877643
No 265
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.66 E-value=6.4e-16 Score=98.45 Aligned_cols=138 Identities=20% Similarity=0.241 Sum_probs=96.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhh----HHhhcccCCEEEEEEE
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRV----WKDYYAKVDAVVYLVD 96 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~----~~~~~~~~d~vl~v~d 96 (193)
.||+++|..|+|||||.+++.+.. +.+.....+++... -.+||||..-.... +......+|.+++|-+
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~------~lykKTQAve~~d~--~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~ 73 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGND------TLYKKTQAVEFNDK--GDIDTPGEYFEHPRWYHALITTLQDADVIIYVHA 73 (148)
T ss_pred ceeEEecccccCchhHHHHhhcch------hhhcccceeeccCc--cccCCchhhhhhhHHHHHHHHHhhccceeeeeec
Confidence 389999999999999999998865 44445555666331 26799996533322 3334568999999999
Q ss_pred CCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeee
Q 029437 97 AYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIV 176 (193)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 176 (193)
++++++.-. ..+ ......|+|-+++|.|++...+.+.....+... ...++|++|+.
T Consensus 74 and~~s~f~--p~f------~~~~~k~vIgvVTK~DLaed~dI~~~~~~L~ea----------------Ga~~IF~~s~~ 129 (148)
T COG4917 74 ANDPESRFP--PGF------LDIGVKKVIGVVTKADLAEDADISLVKRWLREA----------------GAEPIFETSAV 129 (148)
T ss_pred ccCccccCC--ccc------ccccccceEEEEecccccchHhHHHHHHHHHHc----------------CCcceEEEecc
Confidence 999865211 111 112356799999999998544444444443322 23579999999
Q ss_pred cCCChhhHHHhhhh
Q 029437 177 RKMGYGDGFKWLSQ 190 (193)
Q Consensus 177 ~g~gv~el~~~i~~ 190 (193)
...|++++++.|..
T Consensus 130 d~~gv~~l~~~L~~ 143 (148)
T COG4917 130 DNQGVEELVDYLAS 143 (148)
T ss_pred CcccHHHHHHHHHh
Confidence 99999999998864
No 266
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.66 E-value=1e-15 Score=113.61 Aligned_cols=154 Identities=22% Similarity=0.299 Sum_probs=103.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc---cCCCCCcceeEEEe-CCEEEEEEEcCChhhh-------HhhHHhhcccCCE
Q 029437 22 KILFLGLDNAGKTTLLHMLKDERLVQ---HQPTQYPTSEELSI-GKIKFKAFDLGGHQIA-------RRVWKDYYAKVDA 90 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~-~~~~~~~~D~~G~~~~-------~~~~~~~~~~~d~ 90 (193)
-|+++|.|++|||||+++++..+..- ..+|..++...+.. ....+.+-|.||.-.- ..-+...+.++..
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~v 240 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTRV 240 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhhhe
Confidence 47899999999999999998876332 22467777777775 4567999999995432 1223344578899
Q ss_pred EEEEEECCChh------hHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC-CCHHHHHHhhCCCccccCCCccccCCC
Q 029437 91 VVYLVDAYDKE------RFAESKKELDALLSDEALANVPFLVLGNKIDIPYA-ASEEELRYHLGLSNFTTGKGKVNLADS 163 (193)
Q Consensus 91 vl~v~d~~~~~------~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (193)
+++|+|++..+ .++.+...+... .....++|.++++||+|+..+ ...++..+.+....
T Consensus 241 L~hviD~s~~~~~dp~~~~~~i~~EL~~Y--~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~------------- 305 (369)
T COG0536 241 LLHVIDLSPIDGRDPIEDYQTIRNELEKY--SPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEAL------------- 305 (369)
T ss_pred eEEEEecCcccCCCHHHHHHHHHHHHHHh--hHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhc-------------
Confidence 99999997543 233333333333 234468999999999997633 33344444444332
Q ss_pred CCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 164 NVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 164 ~~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
......++||.++.|++++...+.+.+
T Consensus 306 --~~~~~~~ISa~t~~g~~~L~~~~~~~l 332 (369)
T COG0536 306 --GWEVFYLISALTREGLDELLRALAELL 332 (369)
T ss_pred --CCCcceeeehhcccCHHHHHHHHHHHH
Confidence 111222299999999999988876643
No 267
>PRK00007 elongation factor G; Reviewed
Probab=99.66 E-value=7.4e-15 Score=122.28 Aligned_cols=114 Identities=18% Similarity=0.058 Sum_probs=83.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC--c-------------------cccCCCCCcceeEEEeCCEEEEEEEcCChhhh
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDER--L-------------------VQHQPTQYPTSEELSIGKIKFKAFDLGGHQIA 77 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~--~-------------------~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~ 77 (193)
+-.+|+|+|++++|||||+++|.... . .....|.......+.+.+..++++||||+..+
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f 88 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDF 88 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHH
Confidence 34599999999999999999996311 0 01223455556678888999999999999887
Q ss_pred HhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCC
Q 029437 78 RRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAA 137 (193)
Q Consensus 78 ~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~ 137 (193)
.......+..+|++++|+|+...-.. +....+..... .++|+++++||+|+..+.
T Consensus 89 ~~ev~~al~~~D~~vlVvda~~g~~~-qt~~~~~~~~~----~~~p~iv~vNK~D~~~~~ 143 (693)
T PRK00007 89 TIEVERSLRVLDGAVAVFDAVGGVEP-QSETVWRQADK----YKVPRIAFVNKMDRTGAD 143 (693)
T ss_pred HHHHHHHHHHcCEEEEEEECCCCcch-hhHHHHHHHHH----cCCCEEEEEECCCCCCCC
Confidence 66667777899999999999765332 22333443332 378999999999997543
No 268
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=1e-15 Score=116.17 Aligned_cols=153 Identities=21% Similarity=0.208 Sum_probs=101.1
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhcCC--c----------------------c----------ccCCCCCcceeEEEe
Q 029437 16 LWQKEAKILFLGLDNAGKTTLLHMLKDER--L----------------------V----------QHQPTQYPTSEELSI 61 (193)
Q Consensus 16 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~--~----------------------~----------~~~~t~~~~~~~~~~ 61 (193)
..+.+++++++|+.++|||||+-+|+... + . ....|.......++.
T Consensus 3 ~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet 82 (428)
T COG5256 3 SEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET 82 (428)
T ss_pred CCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec
Confidence 35778999999999999999999984221 0 0 112233444555666
Q ss_pred CCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChh---hH-----HHHHHHHHHHHcCCCCCCCcEEEEEeCCCC
Q 029437 62 GKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKE---RF-----AESKKELDALLSDEALANVPFLVLGNKIDI 133 (193)
Q Consensus 62 ~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~---~~-----~~~~~~~~~~~~~~~~~~~pviiv~nK~D~ 133 (193)
+...++++|+||+..|-..+-.....+|+.++|+|+.+.+ ++ ..-+..+...+ .-..+|+++||+|.
T Consensus 83 ~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tl-----Gi~~lIVavNKMD~ 157 (428)
T COG5256 83 DKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTL-----GIKQLIVAVNKMDL 157 (428)
T ss_pred CCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhc-----CCceEEEEEEcccc
Confidence 7788999999999999887778889999999999998763 11 11112222221 24567999999999
Q ss_pred CC--CCCHHHHHHhhCCCcccc-CCCccccCCCCCcceEEEEeeeecCCChh
Q 029437 134 PY--AASEEELRYHLGLSNFTT-GKGKVNLADSNVRPLEVFMCSIVRKMGYG 182 (193)
Q Consensus 134 ~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~ 182 (193)
.. ....+++...... +... +.. ...++++++|+.+|.|+-
T Consensus 158 v~wde~rf~ei~~~v~~-l~k~~G~~--------~~~v~FIPiSg~~G~Nl~ 200 (428)
T COG5256 158 VSWDEERFEEIVSEVSK-LLKMVGYN--------PKDVPFIPISGFKGDNLT 200 (428)
T ss_pred cccCHHHHHHHHHHHHH-HHHHcCCC--------ccCCeEEecccccCCccc
Confidence 84 1222334443332 1100 110 024789999999999984
No 269
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.65 E-value=4.3e-15 Score=123.74 Aligned_cols=113 Identities=19% Similarity=0.039 Sum_probs=84.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcc---------------------ccCCCCCcceeEEEeCCEEEEEEEcCChhhhH
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKDERLV---------------------QHQPTQYPTSEELSIGKIKFKAFDLGGHQIAR 78 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~~~~~---------------------~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~ 78 (193)
--+|+|+|++++|||||+++|....-. ....|.......+.+++..+.+|||||+..+.
T Consensus 10 irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~~ 89 (689)
T TIGR00484 10 FRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDFT 89 (689)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcchh
Confidence 348999999999999999999632110 01234455667788899999999999998887
Q ss_pred hhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCC
Q 029437 79 RVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAA 137 (193)
Q Consensus 79 ~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~ 137 (193)
......++.+|++++|+|+.+....+ ....+..... .++|+++++||+|+..+.
T Consensus 90 ~~~~~~l~~~D~~ilVvda~~g~~~~-~~~~~~~~~~----~~~p~ivviNK~D~~~~~ 143 (689)
T TIGR00484 90 VEVERSLRVLDGAVAVLDAVGGVQPQ-SETVWRQANR----YEVPRIAFVNKMDKTGAN 143 (689)
T ss_pred HHHHHHHHHhCEEEEEEeCCCCCChh-HHHHHHHHHH----cCCCEEEEEECCCCCCCC
Confidence 77778889999999999998754432 2233333322 378999999999997543
No 270
>PRK09866 hypothetical protein; Provisional
Probab=99.62 E-value=2.9e-14 Score=114.44 Aligned_cols=114 Identities=18% Similarity=0.215 Sum_probs=71.4
Q ss_pred EEEEEEEcCChhh-----hHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC
Q 029437 64 IKFKAFDLGGHQI-----ARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAAS 138 (193)
Q Consensus 64 ~~~~~~D~~G~~~-----~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~ 138 (193)
..+.++||||... ....+...+..+|+|++|+|+....+.. ...+...+.... .+.|+++|+||+|+.+...
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~--DeeIlk~Lkk~~-K~~PVILVVNKIDl~dree 306 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSIS--DEEVREAILAVG-QSVPLYVLVNKFDQQDRNS 306 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChh--HHHHHHHHHhcC-CCCCEEEEEEcccCCCccc
Confidence 3478999999643 2334455788999999999997743221 122223322211 1369999999999863222
Q ss_pred --HHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhh
Q 029437 139 --EEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQ 190 (193)
Q Consensus 139 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~ 190 (193)
.+.+......... ........++++||+.|.|++++++.|.+
T Consensus 307 ddkE~Lle~V~~~L~----------q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 307 DDADQVRALISGTLM----------KGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred chHHHHHHHHHHHHH----------hcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 3333333211100 00113467999999999999999999876
No 271
>PRK12740 elongation factor G; Reviewed
Probab=99.62 E-value=2.1e-14 Score=119.62 Aligned_cols=106 Identities=20% Similarity=0.103 Sum_probs=78.7
Q ss_pred EcCCCCCHHHHHHHHhcCCcc---------------------ccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhh
Q 029437 26 LGLDNAGKTTLLHMLKDERLV---------------------QHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDY 84 (193)
Q Consensus 26 ~G~~~~GKssl~~~l~~~~~~---------------------~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~ 84 (193)
+|++|+|||||+++|....-. ....|++.....+.+.+..+.+|||||+..+.......
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 599999999999999432210 12234455566788889999999999998887777778
Q ss_pred cccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC
Q 029437 85 YAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA 136 (193)
Q Consensus 85 ~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~ 136 (193)
+..+|++++|+|+++....+ ....+..... .++|+++++||+|+...
T Consensus 81 l~~aD~vllvvd~~~~~~~~-~~~~~~~~~~----~~~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQ-TETVWRQAEK----YGVPRIIFVNKMDRAGA 127 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHH-HHHHHHHHHH----cCCCEEEEEECCCCCCC
Confidence 88999999999998765433 2233333322 37899999999998754
No 272
>PRK13768 GTPase; Provisional
Probab=99.59 E-value=2.1e-14 Score=105.95 Aligned_cols=128 Identities=17% Similarity=0.130 Sum_probs=72.8
Q ss_pred EEEEEEEcCChhhhH---hhHHhh---ccc--CCEEEEEEECCChhhHHHHH-HHHHHHHcCCCCCCCcEEEEEeCCCCC
Q 029437 64 IKFKAFDLGGHQIAR---RVWKDY---YAK--VDAVVYLVDAYDKERFAESK-KELDALLSDEALANVPFLVLGNKIDIP 134 (193)
Q Consensus 64 ~~~~~~D~~G~~~~~---~~~~~~---~~~--~d~vl~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~pviiv~nK~D~~ 134 (193)
..+.+||+||+.+.. .....+ +.. .+++++|+|+....+..... .++....... ..++|+++++||+|+.
T Consensus 97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-~~~~~~i~v~nK~D~~ 175 (253)
T PRK13768 97 ADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-RLGLPQIPVLNKADLL 175 (253)
T ss_pred CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH-HcCCCEEEEEEhHhhc
Confidence 368999999976532 222222 222 89999999996543222211 1111111111 1479999999999998
Q ss_pred CCCCHHHHHHhhCCC-cc----cc-----CCCccccCC---CCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 135 YAASEEELRYHLGLS-NF----TT-----GKGKVNLAD---SNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 135 ~~~~~~~~~~~~~~~-~~----~~-----~~~~~~~~~---~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
.....++..+.+... .. .. +.-...+.+ ......+++++|++++.|+++++++|.+.+
T Consensus 176 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l 246 (253)
T PRK13768 176 SEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVF 246 (253)
T ss_pred CchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence 665554444433310 00 00 000000000 001224789999999999999999998765
No 273
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.58 E-value=7.7e-14 Score=108.71 Aligned_cols=78 Identities=23% Similarity=0.234 Sum_probs=54.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cC--CCCCcceeEEE------------------------eCCEEEEEEEcCC
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDERLVQ-HQ--PTQYPTSEELS------------------------IGKIKFKAFDLGG 73 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~~~~-~~--~t~~~~~~~~~------------------------~~~~~~~~~D~~G 73 (193)
++|+++|.||+|||||++++++..+.. .. .|..++.+... .....+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 589999999999999999999876542 11 23344443322 1236789999999
Q ss_pred hh----hhHh---hHHhhcccCCEEEEEEECC
Q 029437 74 HQ----IARR---VWKDYYAKVDAVVYLVDAY 98 (193)
Q Consensus 74 ~~----~~~~---~~~~~~~~~d~vl~v~d~~ 98 (193)
.. .... .+...++.+|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 42 2222 2233478999999999996
No 274
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.58 E-value=7.9e-14 Score=105.35 Aligned_cols=137 Identities=23% Similarity=0.325 Sum_probs=98.3
Q ss_pred CCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCC----------hhhHHHHHHHHHHHHcCCC
Q 029437 49 QPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYD----------KERFAESKKELDALLSDEA 118 (193)
Q Consensus 49 ~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~----------~~~~~~~~~~~~~~~~~~~ 118 (193)
.+|.|.....+.+++..+.++|++||...+.=|.+++.++++|++|+++++ ...+.+....+..+.+...
T Consensus 180 ~~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~ 259 (354)
T KOG0082|consen 180 VPTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKW 259 (354)
T ss_pred cCcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcc
Confidence 346677888889999999999999999999989999999999999999974 2446677778888888888
Q ss_pred CCCCcEEEEEeCCCCCC----CCCH-------------HHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCCh
Q 029437 119 LANVPFLVLGNKIDIPY----AASE-------------EELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGY 181 (193)
Q Consensus 119 ~~~~pviiv~nK~D~~~----~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv 181 (193)
..+.++|+++||.|+.. ..+. ++....+...+ ..+.......+=...+.|+.-.+|
T Consensus 260 F~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF-------~~l~~~~~k~iy~h~T~AtDT~nv 332 (354)
T KOG0082|consen 260 FANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKF-------EELNKNKDKKIYVHFTCATDTQNV 332 (354)
T ss_pred cccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHH-------HHHhcccCCcceEEEEeeccHHHH
Confidence 89999999999999861 1111 11111111111 111111112344556789988999
Q ss_pred hhHHHhhhhhc
Q 029437 182 GDGFKWLSQYI 192 (193)
Q Consensus 182 ~el~~~i~~~~ 192 (193)
+.+|....+.+
T Consensus 333 ~~vf~av~d~I 343 (354)
T KOG0082|consen 333 QFVFDAVTDTI 343 (354)
T ss_pred HHHHHHHHHHH
Confidence 99988876543
No 275
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.58 E-value=5.4e-15 Score=114.46 Aligned_cols=174 Identities=18% Similarity=0.154 Sum_probs=115.3
Q ss_pred HHHHHHHHHhhCCC----CCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccC--CCCCcceeEEEeCCEEEEEEEcCChhh
Q 029437 4 LDWFYGVLASLGLW----QKEAKILFLGLDNAGKTTLLHMLKDERLV-QHQ--PTQYPTSEELSIGKIKFKAFDLGGHQI 76 (193)
Q Consensus 4 ~~~~~~~~~~~~~~----~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~--~t~~~~~~~~~~~~~~~~~~D~~G~~~ 76 (193)
++||+...+-+.+. ...-+++|+|-|++|||||++.++..+.. ++. +|.....+.+.+....++++||||.-.
T Consensus 148 l~yLeqVrqhl~rlPsIDp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykYlrwQViDTPGILD 227 (620)
T KOG1490|consen 148 LEYLEQVRQHLSRLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILD 227 (620)
T ss_pred HHHHHHHHHHHhcCCCCCCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhheeeeeecCCccccC
Confidence 56777766655543 36678999999999999999998876633 222 366778888899999999999999321
Q ss_pred h----Hh-----hHHhhcccCCEEEEEEECCChhh--HHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHh
Q 029437 77 A----RR-----VWKDYYAKVDAVVYLVDAYDKER--FAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYH 145 (193)
Q Consensus 77 ~----~~-----~~~~~~~~~d~vl~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~ 145 (193)
. +. ......+--.+|||++|.+..+. ..+-...+..+ ..-..+.|+|+|+||+|..+..+.++-..+
T Consensus 228 ~plEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsI--KpLFaNK~~IlvlNK~D~m~~edL~~~~~~ 305 (620)
T KOG1490|consen 228 RPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSI--KPLFANKVTILVLNKIDAMRPEDLDQKNQE 305 (620)
T ss_pred cchhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHh--HHHhcCCceEEEeecccccCccccCHHHHH
Confidence 1 11 11112233458999999987654 33333444444 222358999999999999865554442222
Q ss_pred hCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhh
Q 029437 146 LGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQY 191 (193)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~ 191 (193)
+-... .....++++.+|..+.+|+-++.+..+.+
T Consensus 306 ll~~~------------~~~~~v~v~~tS~~~eegVm~Vrt~ACe~ 339 (620)
T KOG1490|consen 306 LLQTI------------IDDGNVKVVQTSCVQEEGVMDVRTTACEA 339 (620)
T ss_pred HHHHH------------HhccCceEEEecccchhceeeHHHHHHHH
Confidence 21111 00123789999999999998877665543
No 276
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.57 E-value=5e-14 Score=117.74 Aligned_cols=125 Identities=19% Similarity=0.099 Sum_probs=87.7
Q ss_pred hHHHHHHHHHhhCCCCCccEEEEEcCCCCCHHHHHHHHhcC---------------Cccc----cCCCCCccee----EE
Q 029437 3 LLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDE---------------RLVQ----HQPTQYPTSE----EL 59 (193)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~---------------~~~~----~~~t~~~~~~----~~ 59 (193)
|++++..++... ....+|+++|+.++|||||++++... ++.. ...|...... .+
T Consensus 5 ~~~~~~~~~~~~---~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~ 81 (720)
T TIGR00490 5 MIDKIKELMWKP---KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEY 81 (720)
T ss_pred HHHHHHHHhhCc---ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEee
Confidence 677777777543 34469999999999999999999642 1111 1223333222 24
Q ss_pred EeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC
Q 029437 60 SIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY 135 (193)
Q Consensus 60 ~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~ 135 (193)
.+.+..+.+|||||+..+.......+..+|++++|+|+.+.-.. +....+..... .+.|+++++||+|...
T Consensus 82 ~~~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~-~t~~~~~~~~~----~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 82 EGNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMP-QTETVLRQALK----ENVKPVLFINKVDRLI 152 (720)
T ss_pred cCCceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCc-cHHHHHHHHHH----cCCCEEEEEEChhccc
Confidence 56778999999999998887777888999999999999774221 12233333322 3678899999999873
No 277
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.57 E-value=5.5e-14 Score=106.69 Aligned_cols=108 Identities=17% Similarity=0.093 Sum_probs=68.6
Q ss_pred CEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHH-
Q 029437 63 KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEE- 141 (193)
Q Consensus 63 ~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~- 141 (193)
+.++.++||+|....... ....+|.+++|.+....+.++.......++ .-++|+||.|+........
T Consensus 148 g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~gi~E~---------aDIiVVNKaDl~~~~~a~~~ 215 (332)
T PRK09435 148 GYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKKGIMEL---------ADLIVINKADGDNKTAARRA 215 (332)
T ss_pred CCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHhhhhhh---------hheEEeehhcccchhHHHHH
Confidence 467899999997633322 345699999998755555554443222222 2289999999975443333
Q ss_pred ---HHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 142 ---LRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 142 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
+...+..... ....+..+++.+||++|.|+++++++|.+++
T Consensus 216 ~~el~~~L~l~~~----------~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~ 259 (332)
T PRK09435 216 AAEYRSALRLLRP----------KDPGWQPPVLTCSALEGEGIDEIWQAIEDHR 259 (332)
T ss_pred HHHHHHHHhcccc----------cccCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3333322110 0001235789999999999999999998764
No 278
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.57 E-value=7.7e-14 Score=118.75 Aligned_cols=152 Identities=20% Similarity=0.231 Sum_probs=94.7
Q ss_pred CCHHHHHHHHhcCCccccC---CCCCcceeEEEeCC------------------EEEEEEEcCChhhhHhhHHhhcccCC
Q 029437 31 AGKTTLLHMLKDERLVQHQ---PTQYPTSEELSIGK------------------IKFKAFDLGGHQIARRVWKDYYAKVD 89 (193)
Q Consensus 31 ~GKssl~~~l~~~~~~~~~---~t~~~~~~~~~~~~------------------~~~~~~D~~G~~~~~~~~~~~~~~~d 89 (193)
++||||+.++.+...+... .|.......+..+. -.+.+|||||+..+..+.......+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 5699999999887765432 24443333333221 13899999999999888887888899
Q ss_pred EEEEEEECCC---hhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC--H------------HHHHHhhCC----
Q 029437 90 AVVYLVDAYD---KERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAAS--E------------EELRYHLGL---- 148 (193)
Q Consensus 90 ~vl~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~--~------------~~~~~~~~~---- 148 (193)
++++|+|+++ ++++..+. .+.. .++|+++++||+|+.+... . ++..+++..
T Consensus 552 ivlLVVDa~~Gi~~qT~e~I~-----~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~ 623 (1049)
T PRK14845 552 LAVLVVDINEGFKPQTIEAIN-----ILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYE 623 (1049)
T ss_pred EEEEEEECcccCCHhHHHHHH-----HHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHH
Confidence 9999999987 33333222 2222 3689999999999964221 0 111111110
Q ss_pred ---CccccCCCcc--ccCCCCCcceEEEEeeeecCCChhhHHHhhhh
Q 029437 149 ---SNFTTGKGKV--NLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQ 190 (193)
Q Consensus 149 ---~~~~~~~~~~--~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~ 190 (193)
+....+...+ .........++++++||++|+|+++|+++|..
T Consensus 624 v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~ 670 (1049)
T PRK14845 624 LIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAG 670 (1049)
T ss_pred HhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 0000110000 00112335689999999999999999998853
No 279
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.56 E-value=4.4e-14 Score=105.46 Aligned_cols=110 Identities=19% Similarity=0.263 Sum_probs=69.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccccC-----------CCCCcce--eEEEeCC--EEEEEEEcCChhh--------
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKDERLVQHQ-----------PTQYPTS--EELSIGK--IKFKAFDLGGHQI-------- 76 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~-----------~t~~~~~--~~~~~~~--~~~~~~D~~G~~~-------- 76 (193)
.++|+++|.+|+|||||+|++++..+.... +|..... ..+...+ ..+++|||||...
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~ 83 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCW 83 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhH
Confidence 589999999999999999999988765421 2222222 2233334 5799999999321
Q ss_pred ----------hHhhHH--------hhcc--cCCEEEEEEECCChhhHHHH-HHHHHHHHcCCCCCCCcEEEEEeCCCCCC
Q 029437 77 ----------ARRVWK--------DYYA--KVDAVVYLVDAYDKERFAES-KKELDALLSDEALANVPFLVLGNKIDIPY 135 (193)
Q Consensus 77 ----------~~~~~~--------~~~~--~~d~vl~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~pviiv~nK~D~~~ 135 (193)
+...+. ..+. ++|+++|+++.+... +... .+.+..+ . .++|+++|+||+|+..
T Consensus 84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~-l~~~D~~~lk~l-~----~~v~vi~VinK~D~l~ 157 (276)
T cd01850 84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHG-LKPLDIEFMKRL-S----KRVNIIPVIAKADTLT 157 (276)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCC-CCHHHHHHHHHH-h----ccCCEEEEEECCCcCC
Confidence 111110 1112 578999999886521 2222 3333443 2 2689999999999964
No 280
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.53 E-value=6.6e-15 Score=107.41 Aligned_cols=123 Identities=18% Similarity=0.103 Sum_probs=58.8
Q ss_pred EEEEEEcCChhhhHhhHHhh------c--ccCCEEEEEEECC---ChhhHHHHH-HHHHHHHcCCCCCCCcEEEEEeCCC
Q 029437 65 KFKAFDLGGHQIARRVWKDY------Y--AKVDAVVYLVDAY---DKERFAESK-KELDALLSDEALANVPFLVLGNKID 132 (193)
Q Consensus 65 ~~~~~D~~G~~~~~~~~~~~------~--~~~d~vl~v~d~~---~~~~~~~~~-~~~~~~~~~~~~~~~pviiv~nK~D 132 (193)
.+.++|||||.++...+... + ...-++++++|+. ++..+-... --....++ .+.|.|.++||+|
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~----~~lP~vnvlsK~D 167 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLR----LELPHVNVLSKID 167 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHH----HTSEEEEEE--GG
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhh----CCCCEEEeeeccC
Confidence 78999999998765433222 2 2345789999985 343332211 11111222 3899999999999
Q ss_pred CCCCCCHHHHHHhhC----------CCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 133 IPYAASEEELRYHLG----------LSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 133 ~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
+.... .++..+.+. .....-......+-........+++.|+.+++|+++++..|.+++
T Consensus 168 l~~~~-~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 168 LLSKY-LEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp GS-HH-HHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred cccch-hHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 98522 111111110 000000000011111121233899999999999999999998764
No 281
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.52 E-value=1.7e-13 Score=100.39 Aligned_cols=159 Identities=18% Similarity=0.096 Sum_probs=100.8
Q ss_pred hCCCCCccEEEEEcCCCCCHHHHHHHHhcCCcc--------ccCCCCCcceeE---------------------------
Q 029437 14 LGLWQKEAKILFLGLDNAGKTTLLHMLKDERLV--------QHQPTQYPTSEE--------------------------- 58 (193)
Q Consensus 14 ~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~--------~~~~t~~~~~~~--------------------------- 58 (193)
.+..-...+|+|+|.||+|||||+..|...-.. ...|+...+-+.
T Consensus 45 ~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~ 124 (323)
T COG1703 45 YPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGT 124 (323)
T ss_pred hhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCcc
Confidence 344445579999999999999999998422110 011221111111
Q ss_pred --------------EEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcE
Q 029437 59 --------------LSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPF 124 (193)
Q Consensus 59 --------------~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pv 124 (193)
++-.++++.++.|.|.-+.... ...-+|.+++|.-..-.+..+.+..-+.++-+
T Consensus 125 lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQsev~---I~~~aDt~~~v~~pg~GD~~Q~iK~GimEiaD--------- 192 (323)
T COG1703 125 LGGLSRATREAIKLLDAAGYDVIIVETVGVGQSEVD---IANMADTFLVVMIPGAGDDLQGIKAGIMEIAD--------- 192 (323)
T ss_pred chhhhHHHHHHHHHHHhcCCCEEEEEecCCCcchhH---HhhhcceEEEEecCCCCcHHHHHHhhhhhhhh---------
Confidence 1111467888888875443322 22458999998887777778888877777743
Q ss_pred EEEEeCCCCCCCC-CHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 125 LVLGNKIDIPYAA-SEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 125 iiv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
|+++||.|...+. ...++...+..... ......+..+++.|||.+|+|++++++.|.++.
T Consensus 193 i~vINKaD~~~A~~a~r~l~~al~~~~~--------~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~ 253 (323)
T COG1703 193 IIVINKADRKGAEKAARELRSALDLLRE--------VWRENGWRPPVVTTSALEGEGIDELWDAIEDHR 253 (323)
T ss_pred eeeEeccChhhHHHHHHHHHHHHHhhcc--------cccccCCCCceeEeeeccCCCHHHHHHHHHHHH
Confidence 9999999965332 12234444443320 011223557899999999999999999998764
No 282
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.51 E-value=4.5e-14 Score=102.01 Aligned_cols=107 Identities=16% Similarity=0.099 Sum_probs=66.7
Q ss_pred CEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCC-CHHH
Q 029437 63 KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAA-SEEE 141 (193)
Q Consensus 63 ~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~-~~~~ 141 (193)
++++.++.|.|.-+.... ...-+|.+++|+...-.+..+.+...+.++.+ ++|+||.|+..+. ...+
T Consensus 121 G~D~IiiETVGvGQsE~~---I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEiaD---------i~vVNKaD~~gA~~~~~~ 188 (266)
T PF03308_consen 121 GFDVIIIETVGVGQSEVD---IADMADTVVLVLVPGLGDEIQAIKAGIMEIAD---------IFVVNKADRPGADRTVRD 188 (266)
T ss_dssp T-SEEEEEEESSSTHHHH---HHTTSSEEEEEEESSTCCCCCTB-TTHHHH-S---------EEEEE--SHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCccHHH---HHHhcCeEEEEecCCCccHHHHHhhhhhhhcc---------EEEEeCCChHHHHHHHHH
Confidence 467888888874433322 23558999999998776666666666666633 9999999976322 1223
Q ss_pred HHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhh
Q 029437 142 LRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQY 191 (193)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~ 191 (193)
+...+.+... ....+..+++.|||.+|.|++++++.|.++
T Consensus 189 l~~~l~l~~~----------~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~ 228 (266)
T PF03308_consen 189 LRSMLHLLRE----------REDGWRPPVLKTSALEGEGIDELWEAIDEH 228 (266)
T ss_dssp HHHHHHHCST----------SCTSB--EEEEEBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHhhccc----------cccCCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 3333332220 011245789999999999999999999875
No 283
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.51 E-value=4.2e-13 Score=95.58 Aligned_cols=102 Identities=15% Similarity=0.256 Sum_probs=62.8
Q ss_pred EEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC--CCHHH
Q 029437 64 IKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA--ASEEE 141 (193)
Q Consensus 64 ~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~--~~~~~ 141 (193)
.+..++++.|..-.....+ .-+|.++.|+|+.+.++... .....+ ...-++++||+|+.+. ...+.
T Consensus 92 ~D~iiIEt~G~~l~~~~~~---~l~~~~i~vvD~~~~~~~~~--~~~~qi-------~~ad~~~~~k~d~~~~~~~~~~~ 159 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSP---ELADLTIFVIDVAAGDKIPR--KGGPGI-------TRSDLLVINKIDLAPMVGADLGV 159 (199)
T ss_pred CCEEEEECCCCCcccccch---hhhCcEEEEEEcchhhhhhh--hhHhHh-------hhccEEEEEhhhccccccccHHH
Confidence 4566777777321111111 12578999999987655321 111111 1122899999999853 23333
Q ss_pred HHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 142 LRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
+.+...... ...+++++||++|.|+++++++|.+++
T Consensus 160 ~~~~~~~~~---------------~~~~i~~~Sa~~g~gi~el~~~i~~~~ 195 (199)
T TIGR00101 160 MERDAKKMR---------------GEKPFIFTNLKTKEGLDTVIDWIEHYA 195 (199)
T ss_pred HHHHHHHhC---------------CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 333333222 346789999999999999999998875
No 284
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.50 E-value=6.2e-13 Score=111.52 Aligned_cols=124 Identities=18% Similarity=0.128 Sum_probs=84.5
Q ss_pred hHHHHHHHHHhhCCCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-------------------cCCCCCcceeEEEe--
Q 029437 3 LLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-------------------HQPTQYPTSEELSI-- 61 (193)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-------------------~~~t~~~~~~~~~~-- 61 (193)
+++++..++.... .--+|+++|+.++|||||+.+++...-.. ...|.......+.+
T Consensus 6 ~~~~~~~~~~~~~---~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~ 82 (731)
T PRK07560 6 MVEKILELMKNPE---QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEY 82 (731)
T ss_pred HHHHHHHHhhchh---cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEe
Confidence 4566666665433 33479999999999999999996432110 01122223333333
Q ss_pred --CCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCC
Q 029437 62 --GKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIP 134 (193)
Q Consensus 62 --~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~ 134 (193)
.+..++++||||+..+.......+..+|++++|+|+...-. .+....+...... +.|.|+++||+|+.
T Consensus 83 ~~~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~-~~t~~~~~~~~~~----~~~~iv~iNK~D~~ 152 (731)
T PRK07560 83 EGKEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVM-PQTETVLRQALRE----RVKPVLFINKVDRL 152 (731)
T ss_pred cCCcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCC-ccHHHHHHHHHHc----CCCeEEEEECchhh
Confidence 46789999999999888777788899999999999976532 2233444443332 56889999999986
No 285
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.50 E-value=5.4e-13 Score=96.95 Aligned_cols=146 Identities=16% Similarity=0.114 Sum_probs=86.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEE
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLV 95 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~ 95 (193)
......|+++|++|+|||||++.+....... .....+. .......+.++.++||||.. ..+ ....+.+|.+++|+
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i~i~~~~~~~i~~vDtPg~~--~~~-l~~ak~aDvVllvi 111 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-ITVVTGKKRRLTFIECPNDI--NAM-IDIAKVADLVLLLI 111 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-EEEEecCCceEEEEeCCchH--HHH-HHHHHhcCEEEEEE
Confidence 4566789999999999999999988653221 1111121 11122356789999999864 222 23457899999999
Q ss_pred ECCChhhHHHHHHHHHHHHcCCCCCCCcE-EEEEeCCCCCCCC-CHHHHHHhhCCCccccCCCccccCCCCCcceEEEEe
Q 029437 96 DAYDKERFAESKKELDALLSDEALANVPF-LVLGNKIDIPYAA-SEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMC 173 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pv-iiv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
|++...... ....+..+ .. .+.|. ++++||.|+.... ..+++.+.+...+. +......+++.+
T Consensus 112 Da~~~~~~~-~~~i~~~l-~~---~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~----------~~~~~~~ki~~i 176 (225)
T cd01882 112 DASFGFEME-TFEFLNIL-QV---HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFW----------TEVYQGAKLFYL 176 (225)
T ss_pred ecCcCCCHH-HHHHHHHH-HH---cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHH----------HhhCCCCcEEEE
Confidence 997653221 22222222 22 35675 5599999997432 12233333322110 001133689999
Q ss_pred eeecCCCh
Q 029437 174 SIVRKMGY 181 (193)
Q Consensus 174 Sa~~g~gv 181 (193)
||++...+
T Consensus 177 Sa~~~~~~ 184 (225)
T cd01882 177 SGIVHGRY 184 (225)
T ss_pred eeccCCCC
Confidence 99987544
No 286
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.50 E-value=8.4e-13 Score=96.97 Aligned_cols=118 Identities=15% Similarity=0.131 Sum_probs=75.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccccC----CCCCcceeEEEeCCEEEEEEEcCChhhhH-------h---hHH
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQ----PTQYPTSEELSIGKIKFKAFDLGGHQIAR-------R---VWK 82 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~D~~G~~~~~-------~---~~~ 82 (193)
....++|+|+|.+|+|||||+|++.+....... .|...........+..+.+|||||..... . ...
T Consensus 28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~ 107 (249)
T cd01853 28 LDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIK 107 (249)
T ss_pred ccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHHH
Confidence 457799999999999999999999987654322 23333344445667899999999954331 0 112
Q ss_pred hhcc--cCCEEEEEEECCChh-hH--HHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC
Q 029437 83 DYYA--KVDAVVYLVDAYDKE-RF--AESKKELDALLSDEALANVPFLVLGNKIDIPYA 136 (193)
Q Consensus 83 ~~~~--~~d~vl~v~d~~~~~-~~--~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~ 136 (193)
.++. ..|++++|..++... +. ..+.+.+...+... --.++++|.||+|..+.
T Consensus 108 ~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~--i~~~~ivV~T~~d~~~p 164 (249)
T cd01853 108 RYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPS--IWRNAIVVLTHAASSPP 164 (249)
T ss_pred HHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChh--hHhCEEEEEeCCccCCC
Confidence 2232 578888887665421 11 13333344433211 12469999999999743
No 287
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.49 E-value=2.4e-13 Score=100.50 Aligned_cols=162 Identities=15% Similarity=0.143 Sum_probs=103.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEe----CCEEEEEEEcCChhhhHhhHHhhcccC----C
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSI----GKIKFKAFDLGGHQIARRVWKDYYAKV----D 89 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~----~~~~~~~~D~~G~~~~~~~~~~~~~~~----d 89 (193)
....+|+|+|+.|+|||||+.++.+.+........++-+..+.. +-.++.+|-+.|+.....+++..+... .
T Consensus 50 psgk~VlvlGdn~sGKtsLi~klqg~e~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aet 129 (473)
T KOG3905|consen 50 PSGKNVLVLGDNGSGKTSLISKLQGSETVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAET 129 (473)
T ss_pred CCCCeEEEEccCCCchhHHHHHhhcccccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccce
Confidence 36789999999999999999999998833332222222222222 226789999999887777776665432 4
Q ss_pred EEEEEEECCChhh-HHHHHHHHH---HHHcCCC-----------------------------------------------
Q 029437 90 AVVYLVDAYDKER-FAESKKELD---ALLSDEA----------------------------------------------- 118 (193)
Q Consensus 90 ~vl~v~d~~~~~~-~~~~~~~~~---~~~~~~~----------------------------------------------- 118 (193)
.||++.|+++|-. ++.+..|.. +.++...
T Consensus 130 lviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~l 209 (473)
T KOG3905|consen 130 LVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVL 209 (473)
T ss_pred EEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccccccc
Confidence 7799999998722 233333311 1111000
Q ss_pred ----------CCCCcEEEEEeCCCCCCCCC-----HHH----HHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCC
Q 029437 119 ----------LANVPFLVLGNKIDIPYAAS-----EEE----LRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKM 179 (193)
Q Consensus 119 ----------~~~~pviiv~nK~D~~~~~~-----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 179 (193)
.-++|+++|+||+|...... .++ +..+++... +. -....+.+|+++..
T Consensus 210 lPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFC---------Lr----~GaaLiyTSvKE~K 276 (473)
T KOG3905|consen 210 LPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFC---------LR----YGAALIYTSVKETK 276 (473)
T ss_pred cccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHH---------HH----cCceeEEeeccccc
Confidence 01289999999999852221 122 333332222 11 34578999999999
Q ss_pred ChhhHHHhhhhhc
Q 029437 180 GYGDGFKWLSQYI 192 (193)
Q Consensus 180 gv~el~~~i~~~~ 192 (193)
|++-+.++|.+++
T Consensus 277 NidllyKYivhr~ 289 (473)
T KOG3905|consen 277 NIDLLYKYIVHRS 289 (473)
T ss_pred chHHHHHHHHHHh
Confidence 9999999999875
No 288
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.45 E-value=1.3e-12 Score=110.94 Aligned_cols=123 Identities=15% Similarity=0.108 Sum_probs=86.4
Q ss_pred HHHHHHHHHhhCCCCCccEEEEEcCCCCCHHHHHHHHhcCCcc-------------------ccCCCCCcceeEEEe---
Q 029437 4 LDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLV-------------------QHQPTQYPTSEELSI--- 61 (193)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~-------------------~~~~t~~~~~~~~~~--- 61 (193)
.+|+..+++. .++--+|+|+|+.++|||||+++++...-. ....|.......+.+
T Consensus 6 ~~~~~~~~~~---~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~ 82 (843)
T PLN00116 6 AEELRRIMDK---KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMT 82 (843)
T ss_pred HHHHHHHhhC---ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecc
Confidence 3455555543 344459999999999999999999643311 011122222233333
Q ss_pred -------------CCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEE
Q 029437 62 -------------GKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLG 128 (193)
Q Consensus 62 -------------~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~ 128 (193)
.+..++++||||+..|.......++.+|++++|+|+.+.-.. .....|..... .++|+++++
T Consensus 83 ~~~~~~~~~~~~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~-~t~~~~~~~~~----~~~p~i~~i 157 (843)
T PLN00116 83 DESLKDFKGERDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV-QTETVLRQALG----ERIRPVLTV 157 (843)
T ss_pred cccccccccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcc-cHHHHHHHHHH----CCCCEEEEE
Confidence 257889999999999988888888999999999999876432 23345555544 488999999
Q ss_pred eCCCCC
Q 029437 129 NKIDIP 134 (193)
Q Consensus 129 nK~D~~ 134 (193)
||+|+.
T Consensus 158 NK~D~~ 163 (843)
T PLN00116 158 NKMDRC 163 (843)
T ss_pred ECCccc
Confidence 999997
No 289
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.45 E-value=5.1e-12 Score=94.46 Aligned_cols=125 Identities=12% Similarity=0.144 Sum_probs=76.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccccCC----CCCcceeEEEeCCEEEEEEEcCChhhhHh-------hHHhhc-
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQP----TQYPTSEELSIGKIKFKAFDLGGHQIARR-------VWKDYY- 85 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~G~~~~~~-------~~~~~~- 85 (193)
...++|+++|.+|+||||++|++++.+.....+ +...........+.++.++||||...... ....++
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~ 115 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFLL 115 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHHHHhh
Confidence 467899999999999999999999876432211 12222333445778999999999654321 111111
Q ss_pred -ccCCEEEEEEECCC--hh-hHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHH
Q 029437 86 -AKVDAVVYLVDAYD--KE-RFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRY 144 (193)
Q Consensus 86 -~~~d~vl~v~d~~~--~~-~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~ 144 (193)
...|++|||.+.+. .. .-..+.+.+...+... .-.++|+++|+.|..+ ..+.++...
T Consensus 116 ~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~--iw~~~IVVfTh~d~~~pd~~~~e~fv~ 178 (313)
T TIGR00991 116 GKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKD--IWRKSLVVLTHAQFSPPDGLEYNDFFS 178 (313)
T ss_pred cCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhh--hhccEEEEEECCccCCCCCCCHHHHHH
Confidence 26899999966532 11 1123334444443321 2346899999999763 334444433
No 290
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.44 E-value=5.7e-12 Score=90.83 Aligned_cols=119 Identities=17% Similarity=0.079 Sum_probs=74.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccccC-----CCCCcceeEEEeCCEEEEEEEcCChhh-------hHhhH----Hhh
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDERLVQHQ-----PTQYPTSEELSIGKIKFKAFDLGGHQI-------ARRVW----KDY 84 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~-----~t~~~~~~~~~~~~~~~~~~D~~G~~~-------~~~~~----~~~ 84 (193)
++|+++|..||||||++|.+++.+..... .|...........+..+.++||||... ..... ...
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~ 80 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLC 80 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhc
Confidence 48999999999999999999988754322 255566666688899999999999321 11111 123
Q ss_pred cccCCEEEEEEECCChh-hHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHH
Q 029437 85 YAKVDAVVYLVDAYDKE-RFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEE 141 (193)
Q Consensus 85 ~~~~d~vl~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~ 141 (193)
.++.|++|+|+...... .-....+.+..++.... -..++++.|..|.......++
T Consensus 81 ~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~~--~k~~ivvfT~~d~~~~~~~~~ 136 (212)
T PF04548_consen 81 SPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEEI--WKHTIVVFTHADELEDDSLED 136 (212)
T ss_dssp TT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGGG--GGGEEEEEEEGGGGTTTTHHH
T ss_pred cCCCeEEEEEEecCcchHHHHHHHHHHHHHccHHH--HhHhhHHhhhccccccccHHH
Confidence 45789999999997321 22344455555554321 235888999998876555443
No 291
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.44 E-value=8.6e-13 Score=101.72 Aligned_cols=160 Identities=19% Similarity=0.177 Sum_probs=106.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC--ccccCC-------------CCCc----ceeEEEeCCEEEEEEEcCChhhhHhhH
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDER--LVQHQP-------------TQYP----TSEELSIGKIKFKAFDLGGHQIARRVW 81 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~--~~~~~~-------------t~~~----~~~~~~~~~~~~~~~D~~G~~~~~~~~ 81 (193)
-+|+|+-+..-|||||..+++... |..... ..++ .-..+.|.+++++++|||||-.|....
T Consensus 6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEV 85 (603)
T COG1217 6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEV 85 (603)
T ss_pred ceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchh
Confidence 379999999999999999996432 322110 1122 223467888999999999999998888
Q ss_pred HhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccC
Q 029437 82 KDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLA 161 (193)
Q Consensus 82 ~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (193)
...++-+|.+++++|+.+..--+ .+=.+...+. .+.+.|+|+||+|.+.+...+-+.+.+.+... -....+
T Consensus 86 ERvl~MVDgvlLlVDA~EGpMPQ-TrFVlkKAl~----~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~-L~A~de--- 156 (603)
T COG1217 86 ERVLSMVDGVLLLVDASEGPMPQ-TRFVLKKALA----LGLKPIVVINKIDRPDARPDEVVDEVFDLFVE-LGATDE--- 156 (603)
T ss_pred hhhhhhcceEEEEEEcccCCCCc-hhhhHHHHHH----cCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHH-hCCChh---
Confidence 88889999999999998753221 2112222222 37788999999999765443333333332221 011111
Q ss_pred CCCCcceEEEEeeeecCC----------ChhhHHHhhhhhc
Q 029437 162 DSNVRPLEVFMCSIVRKM----------GYGDGFKWLSQYI 192 (193)
Q Consensus 162 ~~~~~~~~~~~~Sa~~g~----------gv~el~~~i~~~~ 192 (193)
.-..++++.|+..|. ++.-||+.|.+++
T Consensus 157 ---QLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hv 194 (603)
T COG1217 157 ---QLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHV 194 (603)
T ss_pred ---hCCCcEEEeeccCceeccCccccccchhHHHHHHHHhC
Confidence 123678899988774 6788999998875
No 292
>PTZ00416 elongation factor 2; Provisional
Probab=99.44 E-value=1.7e-12 Score=109.98 Aligned_cols=122 Identities=16% Similarity=0.117 Sum_probs=84.9
Q ss_pred HHHHHHHHhhCCCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-------------------cCCCCCcceeEEEeC---
Q 029437 5 DWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-------------------HQPTQYPTSEELSIG--- 62 (193)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-------------------~~~t~~~~~~~~~~~--- 62 (193)
+|+...+.+ .+.--+|+++|+.++|||||+++|....-.. ...|.......+.+.
T Consensus 7 ~~~~~~~~~---~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~ 83 (836)
T PTZ00416 7 DQIREIMDN---PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDL 83 (836)
T ss_pred HHHHHHhhC---ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeeccc
Confidence 455555544 3344599999999999999999997532100 111222222333443
Q ss_pred -------CEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCC
Q 029437 63 -------KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIP 134 (193)
Q Consensus 63 -------~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~ 134 (193)
+..++++||||+..+.......+..+|++++|+|+.+.-.. +....|..... .++|+++++||+|+.
T Consensus 84 ~~~~~~~~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~-~t~~~~~~~~~----~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 84 EDGDDKQPFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCV-QTETVLRQALQ----ERIRPVLFINKVDRA 157 (836)
T ss_pred ccccCCCceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCc-cHHHHHHHHHH----cCCCEEEEEEChhhh
Confidence 56799999999999887778888999999999999875332 23344555543 378999999999997
No 293
>PTZ00258 GTP-binding protein; Provisional
Probab=99.43 E-value=7.9e-12 Score=96.73 Aligned_cols=86 Identities=21% Similarity=0.275 Sum_probs=61.5
Q ss_pred hhCCCCCccEEEEEcCCCCCHHHHHHHHhcCCccc---cCCCCCcceeEEEeCC-----------------EEEEEEEcC
Q 029437 13 SLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQ---HQPTQYPTSEELSIGK-----------------IKFKAFDLG 72 (193)
Q Consensus 13 ~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~-----------------~~~~~~D~~ 72 (193)
..++....++|+++|.||+|||||+|++++..... ...|..++...+.+.+ ..+.++|+|
T Consensus 14 ~~~~~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtp 93 (390)
T PTZ00258 14 LLGRPGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIA 93 (390)
T ss_pred hhccCCCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECC
Confidence 34455677899999999999999999998766321 2235567776666542 348999999
Q ss_pred Chhh-------hHhhHHhhcccCCEEEEEEECC
Q 029437 73 GHQI-------ARRVWKDYYAKVDAVVYLVDAY 98 (193)
Q Consensus 73 G~~~-------~~~~~~~~~~~~d~vl~v~d~~ 98 (193)
|... ....+...++.+|++++|+|+.
T Consensus 94 GLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 94 GLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 9532 2223334567899999999983
No 294
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.42 E-value=1.5e-12 Score=97.33 Aligned_cols=150 Identities=19% Similarity=0.114 Sum_probs=99.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcc------------------------------------ccCCCCCcceeEEE
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLV------------------------------------QHQPTQYPTSEELS 60 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~------------------------------------~~~~t~~~~~~~~~ 60 (193)
.+..+|++-+|...=|||||+-+|+.+.-. +...|++.....+.
T Consensus 3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs 82 (431)
T COG2895 3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS 82 (431)
T ss_pred cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence 456689999999999999999999654321 01123333444445
Q ss_pred eCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHH--HHHHHHHcCCCCCCCcEEEEEeCCCCCCCC-
Q 029437 61 IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESK--KELDALLSDEALANVPFLVLGNKIDIPYAA- 137 (193)
Q Consensus 61 ~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~--~~~~~~~~~~~~~~~pviiv~nK~D~~~~~- 137 (193)
..+.++.+-|||||+.|...+-.....||+.++++|+...- +++.+ .++..++ .-..+++.+||+|+.+..
T Consensus 83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gv-l~QTrRHs~I~sLL-----GIrhvvvAVNKmDLvdy~e 156 (431)
T COG2895 83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGV-LEQTRRHSFIASLL-----GIRHVVVAVNKMDLVDYSE 156 (431)
T ss_pred cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhh-HHHhHHHHHHHHHh-----CCcEEEEEEeeecccccCH
Confidence 56789999999999999888777888999999999995431 12221 2222332 245689999999998432
Q ss_pred -CHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChh
Q 029437 138 -SEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYG 182 (193)
Q Consensus 138 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~ 182 (193)
..+++..++..... +-......+++.||..|.|+-
T Consensus 157 ~~F~~I~~dy~~fa~----------~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 157 EVFEAIVADYLAFAA----------QLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred HHHHHHHHHHHHHHH----------HcCCCcceEEechhccCCccc
Confidence 23344444432110 001133589999999999983
No 295
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=7.4e-13 Score=97.75 Aligned_cols=163 Identities=20% Similarity=0.197 Sum_probs=102.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccccC--------------------------CCCCcceeEEEeC------CE
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQ--------------------------PTQYPTSEELSIG------KI 64 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~--------------------------~t~~~~~~~~~~~------~~ 64 (193)
.+.+++|..+|+..-|||||..++++.....+. |..+.....+... -.
T Consensus 7 ~Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R 86 (415)
T COG5257 7 IQPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVR 86 (415)
T ss_pred CCcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEE
Confidence 367899999999999999999999754322110 0001111111111 15
Q ss_pred EEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHH-HH
Q 029437 65 KFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEE-LR 143 (193)
Q Consensus 65 ~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~-~~ 143 (193)
.+.+.|.|||+-.-..+.....--|+.++|+.++.+.---+..+.+..+-- ..-..+|++-||+|+.......| ..
T Consensus 87 ~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleI---igik~iiIvQNKIDlV~~E~AlE~y~ 163 (415)
T COG5257 87 RVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEI---IGIKNIIIVQNKIDLVSRERALENYE 163 (415)
T ss_pred EEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhh---hccceEEEEecccceecHHHHHHHHH
Confidence 789999999997665555444556999999999875432233333333211 12467899999999984322211 22
Q ss_pred HhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhcC
Q 029437 144 YHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK 193 (193)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~~ 193 (193)
+..+ +.. -..-...+++++||..+.|++.++++|.+++.
T Consensus 164 qIk~---Fvk--------Gt~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ip 202 (415)
T COG5257 164 QIKE---FVK--------GTVAENAPIIPISAQHKANIDALIEAIEKYIP 202 (415)
T ss_pred HHHH---Hhc--------ccccCCCceeeehhhhccCHHHHHHHHHHhCC
Confidence 1111 111 11124478999999999999999999998763
No 296
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=3.2e-13 Score=106.43 Aligned_cols=154 Identities=19% Similarity=0.145 Sum_probs=99.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCC--cc--------------------------------ccCCCCCcceeEEEeC
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDER--LV--------------------------------QHQPTQYPTSEELSIG 62 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~--~~--------------------------------~~~~t~~~~~~~~~~~ 62 (193)
.+.+++++++|+..+|||||+.+++..- .. ....|.......++-.
T Consensus 174 ~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~ 253 (603)
T KOG0458|consen 174 PKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESK 253 (603)
T ss_pred CccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecC
Confidence 3578999999999999999999884321 00 0111222233344445
Q ss_pred CEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCCh---hhHH---HHHHHHHHHHcCCCCCCCcEEEEEeCCCCC--
Q 029437 63 KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDK---ERFA---ESKKELDALLSDEALANVPFLVLGNKIDIP-- 134 (193)
Q Consensus 63 ~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~---~~~~---~~~~~~~~~~~~~~~~~~pviiv~nK~D~~-- 134 (193)
...++++|+||+..|...+......+|+.++|+|++-. .+|. +.++ +..++... .-..+++++||+|+.
T Consensus 254 ~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrE-ha~llr~L--gi~qlivaiNKmD~V~W 330 (603)
T KOG0458|consen 254 SKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTRE-HALLLRSL--GISQLIVAINKMDLVSW 330 (603)
T ss_pred ceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHH-HHHHHHHc--CcceEEEEeecccccCc
Confidence 67899999999999988878888899999999999642 1121 1111 11122221 255689999999998
Q ss_pred CCCCHHHHHHhhCCCcccc-CCCccccCCCCCcceEEEEeeeecCCCh
Q 029437 135 YAASEEELRYHLGLSNFTT-GKGKVNLADSNVRPLEVFMCSIVRKMGY 181 (193)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Sa~~g~gv 181 (193)
.....+++...+.....+. +... ..+.|++||+.+|+|+
T Consensus 331 sq~RF~eIk~~l~~fL~~~~gf~e--------s~v~FIPiSGl~GeNL 370 (603)
T KOG0458|consen 331 SQDRFEEIKNKLSSFLKESCGFKE--------SSVKFIPISGLSGENL 370 (603)
T ss_pred cHHHHHHHHHHHHHHHHHhcCccc--------CCcceEecccccCCcc
Confidence 3344555665555333111 1111 3368999999999997
No 297
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.41 E-value=5.9e-12 Score=95.32 Aligned_cols=109 Identities=15% Similarity=0.062 Sum_probs=64.8
Q ss_pred CEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHH
Q 029437 63 KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEEL 142 (193)
Q Consensus 63 ~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~ 142 (193)
+.++.++||+|..... ......+|.++++......+ ++......+ .++|.++++||+|+.+.......
T Consensus 126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~~---el~~~~~~l------~~~~~ivv~NK~Dl~~~~~~~~~ 193 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTGD---DLQGIKAGL------MEIADIYVVNKADGEGATNVTIA 193 (300)
T ss_pred CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCccH---HHHHHHHHH------hhhccEEEEEcccccchhHHHHH
Confidence 5778999999854222 12456678888885543332 333333333 36678999999999754432222
Q ss_pred HHhh--CCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhh
Q 029437 143 RYHL--GLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQY 191 (193)
Q Consensus 143 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~ 191 (193)
...+ ........ ......+++++||++|.|+++++++|.+.
T Consensus 194 ~~~~~~~l~~l~~~--------~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~ 236 (300)
T TIGR00750 194 RLMLALALEEIRRR--------EDGWRPPVLTTSAVEGRGIDELWDAIEEH 236 (300)
T ss_pred HHHHHHHHhhcccc--------ccCCCCCEEEEEccCCCCHHHHHHHHHHH
Confidence 2111 11110000 00012358999999999999999999875
No 298
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=99.39 E-value=3e-12 Score=100.38 Aligned_cols=133 Identities=20% Similarity=0.334 Sum_probs=94.1
Q ss_pred CcceeEEEe-CCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCC----------hhhHHHHHHHHHHHHcCCCCCC
Q 029437 53 YPTSEELSI-GKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYD----------KERFAESKKELDALLSDEALAN 121 (193)
Q Consensus 53 ~~~~~~~~~-~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~ 121 (193)
|.....+.+ +...+.++|++|+...+.-|.+++.++++||||+++++ ...+.+....+..+.+.....+
T Consensus 224 Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~ 303 (389)
T PF00503_consen 224 GITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKN 303 (389)
T ss_dssp SEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTT
T ss_pred CeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCccccc
Confidence 455666777 88899999999999998888899999999999999863 2457788888999988877789
Q ss_pred CcEEEEEeCCCCC----CCCC-H---------------HHHHHhhCCCccccCCCccccCCCCC--cceEEEEeeeecCC
Q 029437 122 VPFLVLGNKIDIP----YAAS-E---------------EELRYHLGLSNFTTGKGKVNLADSNV--RPLEVFMCSIVRKM 179 (193)
Q Consensus 122 ~pviiv~nK~D~~----~~~~-~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~g~ 179 (193)
.|+|+++||.|+. .... . ++..+.+...+... ..... ..+-+..++|..-.
T Consensus 304 ~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~-------~~~~~~~~~~~~h~t~a~d~~ 376 (389)
T PF00503_consen 304 TPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRL-------NRNNSPSRRIYVHFTCATDTE 376 (389)
T ss_dssp SEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCT-------HSTTTTCS-EEEEEESTTSHH
T ss_pred CceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHh-------ccCCCCCcceEEEEeeecccH
Confidence 9999999999976 1111 1 11111111111100 01111 44667789999999
Q ss_pred ChhhHHHhhhhhc
Q 029437 180 GYGDGFKWLSQYI 192 (193)
Q Consensus 180 gv~el~~~i~~~~ 192 (193)
.+..+|+.+.+.|
T Consensus 377 ~~~~v~~~v~~~i 389 (389)
T PF00503_consen 377 NIRKVFNAVKDII 389 (389)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcC
Confidence 9999999887653
No 299
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=3e-12 Score=98.12 Aligned_cols=124 Identities=20% Similarity=0.188 Sum_probs=85.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC--cc-----------------------ccCCCCCcceeEEEeCCEEEEEEEcCChhh
Q 029437 22 KILFLGLDNAGKTTLLHMLKDER--LV-----------------------QHQPTQYPTSEELSIGKIKFKAFDLGGHQI 76 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~~~--~~-----------------------~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~ 76 (193)
..+|+.+|.+|||||..+++.-. .. +...++-.....+++.+..+++.|||||+.
T Consensus 14 TFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHeD 93 (528)
T COG4108 14 TFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHED 93 (528)
T ss_pred ceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCccc
Confidence 68999999999999999874211 10 011122235667888999999999999999
Q ss_pred hHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC---HHHHHHhhCCCc
Q 029437 77 ARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAAS---EEELRYHLGLSN 150 (193)
Q Consensus 77 ~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~---~~~~~~~~~~~~ 150 (193)
+..=.-..+..+|..+.|+|+...-.- +..+++ +-....++|++-.+||.|.....+ .+|+.+.+++..
T Consensus 94 FSEDTYRtLtAvDsAvMVIDaAKGiE~-qT~KLf----eVcrlR~iPI~TFiNKlDR~~rdP~ELLdEiE~~L~i~~ 165 (528)
T COG4108 94 FSEDTYRTLTAVDSAVMVIDAAKGIEP-QTLKLF----EVCRLRDIPIFTFINKLDREGRDPLELLDEIEEELGIQC 165 (528)
T ss_pred cchhHHHHHHhhheeeEEEecccCccH-HHHHHH----HHHhhcCCceEEEeeccccccCChHHHHHHHHHHhCcce
Confidence 877666667789999999999765221 122222 223446999999999999874332 345666666443
No 300
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=5.6e-12 Score=96.81 Aligned_cols=154 Identities=16% Similarity=-0.007 Sum_probs=109.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcc------ccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEE
Q 029437 22 KILFLGLDNAGKTTLLHMLKDERLV------QHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLV 95 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~~~~~------~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~ 95 (193)
.|+..|+-.-|||||+..+++..-. ....|.+......+.++..+.++|.||++++-..+-..+...|..++|+
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV 81 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV 81 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence 5788999999999999999876533 2345777777778888889999999999998877777778899999999
Q ss_pred ECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeee
Q 029437 96 DAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSI 175 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 175 (193)
++++.-.. +..+. ..+++.. .....++++||+|.......++..++..... .....+++.+|+
T Consensus 82 ~~deGl~~-qtgEh-L~iLdll--gi~~giivltk~D~~d~~r~e~~i~~Il~~l-------------~l~~~~i~~~s~ 144 (447)
T COG3276 82 AADEGLMA-QTGEH-LLILDLL--GIKNGIIVLTKADRVDEARIEQKIKQILADL-------------SLANAKIFKTSA 144 (447)
T ss_pred eCccCcch-hhHHH-HHHHHhc--CCCceEEEEeccccccHHHHHHHHHHHHhhc-------------cccccccccccc
Confidence 99654211 11121 1222221 1334599999999985544444333333222 014467899999
Q ss_pred ecCCChhhHHHhhhhhc
Q 029437 176 VRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 176 ~~g~gv~el~~~i~~~~ 192 (193)
++|.|+++|.+.|.+..
T Consensus 145 ~~g~GI~~Lk~~l~~L~ 161 (447)
T COG3276 145 KTGRGIEELKNELIDLL 161 (447)
T ss_pred ccCCCHHHHHHHHHHhh
Confidence 99999999999987654
No 301
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.38 E-value=2.2e-12 Score=92.74 Aligned_cols=58 Identities=21% Similarity=0.258 Sum_probs=41.4
Q ss_pred CCcEEEEEeCCCCCCCC--CHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhcC
Q 029437 121 NVPFLVLGNKIDIPYAA--SEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK 193 (193)
Q Consensus 121 ~~pviiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~~ 193 (193)
..|.++++||+|+.... ...+..+.+.... ...+++++||++|.|+++++++|.+..+
T Consensus 148 ~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~~---------------~~~~i~~~Sa~~g~gv~~l~~~i~~~~~ 207 (207)
T TIGR00073 148 KEADLIVINKADLAEAVGFDVEKMKADAKKIN---------------PEAEIILMSLKTGEGLDEWLEFLEGQVK 207 (207)
T ss_pred hhCCEEEEEHHHccccchhhHHHHHHHHHHhC---------------CCCCEEEEECCCCCCHHHHHHHHHHhhC
Confidence 56789999999997532 2333333332111 2357999999999999999999988754
No 302
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.37 E-value=8.2e-13 Score=91.29 Aligned_cols=79 Identities=14% Similarity=0.183 Sum_probs=51.4
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCH--HHHHHhhCCCccccCCCccccCCCCCcc
Q 029437 90 AVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASE--EELRYHLGLSNFTTGKGKVNLADSNVRP 167 (193)
Q Consensus 90 ~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (193)
.-++|+|++..+.. .++. ...... .-++|+||.|+.+.... +.+......-. ..
T Consensus 120 ~~v~VidvteGe~~--P~K~------gP~i~~-aDllVInK~DLa~~v~~dlevm~~da~~~n---------------p~ 175 (202)
T COG0378 120 LRVVVIDVTEGEDI--PRKG------GPGIFK-ADLLVINKTDLAPYVGADLEVMARDAKEVN---------------PE 175 (202)
T ss_pred eEEEEEECCCCCCC--cccC------CCceeE-eeEEEEehHHhHHHhCccHHHHHHHHHHhC---------------CC
Confidence 66788887665321 0000 011112 45899999999976544 44444333333 45
Q ss_pred eEEEEeeeecCCChhhHHHhhhhhc
Q 029437 168 LEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 168 ~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
.+++++|+++|+|++++++||....
T Consensus 176 ~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 176 APIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred CCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 6899999999999999999998653
No 303
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.35 E-value=1.2e-12 Score=97.04 Aligned_cols=56 Identities=21% Similarity=0.221 Sum_probs=41.3
Q ss_pred CCcEEEEEeCCCCCCCC--CHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhh
Q 029437 121 NVPFLVLGNKIDIPYAA--SEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQY 191 (193)
Q Consensus 121 ~~pviiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~ 191 (193)
..+-++++||+|+.+.. ..+++.+.+.... ...+++++||++|+|++++.+||..+
T Consensus 230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~ln---------------p~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 230 AAASLMLLNKVDLLPYLNFDVEKCIACAREVN---------------PEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred hcCcEEEEEhHHcCcccHHHHHHHHHHHHhhC---------------CCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 45669999999997532 3444444443222 34689999999999999999999875
No 304
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.34 E-value=5.7e-12 Score=96.58 Aligned_cols=169 Identities=17% Similarity=0.154 Sum_probs=80.2
Q ss_pred HHHHHHHhhCCCCCccEEEEEcCCCCCHHHHHHHHhcCC--cc---cc---CCCCCcceeEEEeCCEEEEEEEcCChhhh
Q 029437 6 WFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDER--LV---QH---QPTQYPTSEELSIGKIKFKAFDLGGHQIA 77 (193)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~--~~---~~---~~t~~~~~~~~~~~~~~~~~~D~~G~~~~ 77 (193)
.++..+..... ..++|+|+|.+|+|||||+|++.+-. .. +. ..|..+..+.- -..-.+.+||+||....
T Consensus 23 ~i~~~l~~~~~--~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~-p~~pnv~lWDlPG~gt~ 99 (376)
T PF05049_consen 23 KIREALKDIDN--APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPH-PKFPNVTLWDLPGIGTP 99 (376)
T ss_dssp HHHHHHHHHHH----EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE--SS-TTEEEEEE--GGGS
T ss_pred HHHHHHHHhhc--CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCC-CCCCCCeEEeCCCCCCC
Confidence 34444444433 45899999999999999999996532 11 11 11222222221 11125899999996432
Q ss_pred HhhH-----HhhcccCCEEEEEEECCChhhHHHHHHH-HHHHHcCCCCCCCcEEEEEeCCCCC---------CCCCHHHH
Q 029437 78 RRVW-----KDYYAKVDAVVYLVDAYDKERFAESKKE-LDALLSDEALANVPFLVLGNKIDIP---------YAASEEEL 142 (193)
Q Consensus 78 ~~~~-----~~~~~~~d~vl~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~~pviiv~nK~D~~---------~~~~~~~~ 142 (193)
.... ...+..-|.+|++.+-. |...+-+ ...+-. .++|+++|-||+|.. .....+++
T Consensus 100 ~f~~~~Yl~~~~~~~yD~fiii~s~r----f~~ndv~La~~i~~----~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~ 171 (376)
T PF05049_consen 100 NFPPEEYLKEVKFYRYDFFIIISSER----FTENDVQLAKEIQR----MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKL 171 (376)
T ss_dssp S--HHHHHHHTTGGG-SEEEEEESSS------HHHHHHHHHHHH----TT-EEEEEE--HHHHHHHHHCC-STT--HHTH
T ss_pred CCCHHHHHHHccccccCEEEEEeCCC----CchhhHHHHHHHHH----cCCcEEEEEecccccHhhhhccCCcccCHHHH
Confidence 2211 22356779888776642 3333333 333322 489999999999962 12233332
Q ss_pred HHhhCCCccccCCCccccCCCCCcceEEEEeeeecC--CChhhHHHhhhhh
Q 029437 143 RYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRK--MGYGDGFKWLSQY 191 (193)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g--~gv~el~~~i~~~ 191 (193)
.++.+.... .++.+......++|.+|+..- .+...|.+.|.+-
T Consensus 172 L~~IR~~c~------~~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~d 216 (376)
T PF05049_consen 172 LQEIRENCL------ENLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKD 216 (376)
T ss_dssp HHHHHHHHH------HHHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHH------HHHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHH
Confidence 222221111 111222234467899998653 4466666666543
No 305
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.33 E-value=8e-12 Score=98.93 Aligned_cols=163 Identities=16% Similarity=0.136 Sum_probs=101.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeC----CEEEEEEEcCChhhhHhhHHhhccc----C
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIG----KIKFKAFDLGGHQIARRVWKDYYAK----V 88 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~----~~~~~~~D~~G~~~~~~~~~~~~~~----~ 88 (193)
...+..|+|+|..++|||||+.+|.+.+........++....+... ..++.+|-+.|...+..+.+-.+.. -
T Consensus 22 ~~~~k~vlvlG~~~~GKttli~~L~~~e~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~ 101 (472)
T PF05783_consen 22 LPSEKSVLVLGDKGSGKTTLIARLQGIEDPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPN 101 (472)
T ss_pred CCCCceEEEEeCCCCchHHHHHHhhccCCCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccc
Confidence 4566899999999999999999998766432222222233322222 2578999999987777776655542 3
Q ss_pred CEEEEEEECCChhhH-HHHHHH----------------------------HHHHHc---CC-------------------
Q 029437 89 DAVVYLVDAYDKERF-AESKKE----------------------------LDALLS---DE------------------- 117 (193)
Q Consensus 89 d~vl~v~d~~~~~~~-~~~~~~----------------------------~~~~~~---~~------------------- 117 (193)
-.|++|.|.+.|..+ +.+..| |....+ ..
T Consensus 102 t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~ 181 (472)
T PF05783_consen 102 TLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDES 181 (472)
T ss_pred eEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccccccc
Confidence 588999999986332 222222 111100 00
Q ss_pred -----------CCCCCcEEEEEeCCCCCCCCCH---------HHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeec
Q 029437 118 -----------ALANVPFLVLGNKIDIPYAASE---------EELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVR 177 (193)
Q Consensus 118 -----------~~~~~pviiv~nK~D~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 177 (193)
...++|++||++|+|....... +.+...++... + ......+.||++.
T Consensus 182 ~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~c---------L----~yGAsL~yts~~~ 248 (472)
T PF05783_consen 182 VLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFC---------L----KYGASLIYTSVKE 248 (472)
T ss_pred ccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHH---------H----hcCCeEEEeeccc
Confidence 0013899999999997621111 12333232222 1 1346788999999
Q ss_pred CCChhhHHHhhhhhc
Q 029437 178 KMGYGDGFKWLSQYI 192 (193)
Q Consensus 178 g~gv~el~~~i~~~~ 192 (193)
..+++-|+.+|.+.+
T Consensus 249 ~~n~~~L~~yi~h~l 263 (472)
T PF05783_consen 249 EKNLDLLYKYILHRL 263 (472)
T ss_pred cccHHHHHHHHHHHh
Confidence 999999999998765
No 306
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=4.2e-12 Score=102.67 Aligned_cols=163 Identities=19% Similarity=0.177 Sum_probs=102.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccccC---CCCCcceeEE------------------EeCCEEEEEEEcCChhhh
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQ---PTQYPTSEEL------------------SIGKIKFKAFDLGGHQIA 77 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~---~t~~~~~~~~------------------~~~~~~~~~~D~~G~~~~ 77 (193)
...-+.|+|+..+|||-|+..+.+.....-. .|..+....+ .+.--.+.++||||+++|
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsF 553 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESF 553 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhh
Confidence 3456889999999999999999776543211 1111111111 122235789999999999
Q ss_pred HhhHHhhcccCCEEEEEEECCCh---hhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC------CCHHH-------
Q 029437 78 RRVWKDYYAKVDAVVYLVDAYDK---ERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA------ASEEE------- 141 (193)
Q Consensus 78 ~~~~~~~~~~~d~vl~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~------~~~~~------- 141 (193)
..++......||..|+|+|+.+. +++..+ +.....+.|+|+.+||+|.... ....+
T Consensus 554 tnlRsrgsslC~~aIlvvdImhGlepqtiESi--------~lLR~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k 625 (1064)
T KOG1144|consen 554 TNLRSRGSSLCDLAILVVDIMHGLEPQTIESI--------NLLRMRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKK 625 (1064)
T ss_pred hhhhhccccccceEEEEeehhccCCcchhHHH--------HHHHhcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhH
Confidence 99999888999999999999764 222221 2223469999999999998721 11111
Q ss_pred -HHHhhC-------CCcccc----CCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhh
Q 029437 142 -LRYHLG-------LSNFTT----GKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQY 191 (193)
Q Consensus 142 -~~~~~~-------~~~~~~----~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~ 191 (193)
+...|. ..+.++ .-...| ......+-++++||.+|+||.+|+.+|...
T Consensus 626 ~v~~EF~~R~~~ii~efaEQgLN~~LyykN--k~~~~~vsiVPTSA~sGeGipdLl~llv~l 685 (1064)
T KOG1144|consen 626 DVQNEFKERLNNIIVEFAEQGLNAELYYKN--KEMGETVSIVPTSAISGEGIPDLLLLLVQL 685 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHHcccchhheeec--ccccceEEeeecccccCCCcHHHHHHHHHH
Confidence 111111 111111 000011 112245788999999999999999998764
No 307
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.30 E-value=2.7e-11 Score=90.57 Aligned_cols=112 Identities=18% Similarity=0.207 Sum_probs=64.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccccC-----------CCCCcceeE--EEeC--CEEEEEEEcCChh---------
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKDERLVQHQ-----------PTQYPTSEE--LSIG--KIKFKAFDLGGHQ--------- 75 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~-----------~t~~~~~~~--~~~~--~~~~~~~D~~G~~--------- 75 (193)
.++|+|+|.+|+|||||+|.|++....... .+....... +... ...++++||||-.
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 589999999999999999999987654321 111112211 2222 2678999999921
Q ss_pred ---------hhHhhHHhh---------cccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC
Q 029437 76 ---------IARRVWKDY---------YAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA 136 (193)
Q Consensus 76 ---------~~~~~~~~~---------~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~ 136 (193)
++...+... =.++|++||+++.+...--....+.++.+ . ..+++|.|+.|+|....
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~L-s----~~vNvIPvIaKaD~lt~ 157 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRL-S----KRVNVIPVIAKADTLTP 157 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHH-T----TTSEEEEEESTGGGS-H
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHh-c----ccccEEeEEecccccCH
Confidence 111111111 02679999999986532112222444555 2 37889999999999753
No 308
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=2.2e-11 Score=100.47 Aligned_cols=125 Identities=22% Similarity=0.144 Sum_probs=91.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcc---------------------ccCCCCCcceeEEEeCC-EEEEEEEcCChhh
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDERLV---------------------QHQPTQYPTSEELSIGK-IKFKAFDLGGHQI 76 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~---------------------~~~~t~~~~~~~~~~~~-~~~~~~D~~G~~~ 76 (193)
.--+|+|+|+.++|||||..+++...-. ....|+......+.+.+ +.++++|||||-.
T Consensus 9 ~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHVD 88 (697)
T COG0480 9 RIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHVD 88 (697)
T ss_pred cceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCccc
Confidence 4458999999999999999998532211 01123344455677885 9999999999999
Q ss_pred hHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCC---CHHHHHHhhCC
Q 029437 77 ARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAA---SEEELRYHLGL 148 (193)
Q Consensus 77 ~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~---~~~~~~~~~~~ 148 (193)
|.......++-+|++++|+|+.+.-.. +....|+.... .++|.++++||+|..... ...++.+.+..
T Consensus 89 Ft~EV~rslrvlDgavvVvdaveGV~~-QTEtv~rqa~~----~~vp~i~fiNKmDR~~a~~~~~~~~l~~~l~~ 158 (697)
T COG0480 89 FTIEVERSLRVLDGAVVVVDAVEGVEP-QTETVWRQADK----YGVPRILFVNKMDRLGADFYLVVEQLKERLGA 158 (697)
T ss_pred cHHHHHHHHHhhcceEEEEECCCCeee-cHHHHHHHHhh----cCCCeEEEEECccccccChhhhHHHHHHHhCC
Confidence 998888888999999999999876332 33345555544 489999999999998432 34456666654
No 309
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.29 E-value=9.5e-12 Score=91.45 Aligned_cols=96 Identities=19% Similarity=0.129 Sum_probs=70.8
Q ss_pred hhhHhhHHhhcccCCEEEEEEECCChh-hHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHH-HHHHhhCCCccc
Q 029437 75 QIARRVWKDYYAKVDAVVYLVDAYDKE-RFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEE-ELRYHLGLSNFT 152 (193)
Q Consensus 75 ~~~~~~~~~~~~~~d~vl~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~-~~~~~~~~~~~~ 152 (193)
+++..+...++.++|.+++|+|+.++. ++..+..|+..... .++|+++|+||+|+....... +..+.+..
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~----~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~---- 95 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA----QNIEPIIVLNKIDLLDDEDMEKEQLDIYRN---- 95 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECcccCCCHHHHHHHHHHHHH----
Confidence 455566667889999999999999887 78888888765532 589999999999996432211 22222211
Q ss_pred cCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhh
Q 029437 153 TGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQY 191 (193)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~ 191 (193)
...+++++||++|.|++++|+.|.+.
T Consensus 96 -------------~g~~v~~~SAktg~gi~eLf~~l~~~ 121 (245)
T TIGR00157 96 -------------IGYQVLMTSSKNQDGLKELIEALQNR 121 (245)
T ss_pred -------------CCCeEEEEecCCchhHHHHHhhhcCC
Confidence 22578999999999999999988653
No 310
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.29 E-value=2.6e-11 Score=89.77 Aligned_cols=149 Identities=21% Similarity=0.151 Sum_probs=98.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc---cCCCCCcceeEEEeC-CEEEEEEEcCChhh---------hHhhHHh
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ---HQPTQYPTSEELSIG-KIKFKAFDLGGHQI---------ARRVWKD 83 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~~D~~G~~~---------~~~~~~~ 83 (193)
......|.++|-.|||||||+++|+.....+ -..|.+++.+..... +..+.+-||.|--+ |+.. .+
T Consensus 175 ~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~AT-Le 253 (410)
T KOG0410|consen 175 GESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQAT-LE 253 (410)
T ss_pred cCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHHH-HH
Confidence 3456789999999999999999999554333 234677766666553 45678889999422 2332 33
Q ss_pred hcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCc----EEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccc
Q 029437 84 YYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVP----FLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVN 159 (193)
Q Consensus 84 ~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p----viiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (193)
.+..+|.++.|.|+++|+--.+.... ...++....+..| ++-|-||.|..+....+|
T Consensus 254 eVaeadlllHvvDiShP~ae~q~e~V-l~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~E------------------ 314 (410)
T KOG0410|consen 254 EVAEADLLLHVVDISHPNAEEQRETV-LHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEEE------------------ 314 (410)
T ss_pred HHhhcceEEEEeecCCccHHHHHHHH-HHHHHhcCCCcHHHHhHHHhhccccccccccCccc------------------
Confidence 44688999999999998653333333 3333433333333 466778888764332221
Q ss_pred cCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 160 LADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 160 ~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
....+.+||.+|.|++++.+.+..++
T Consensus 315 -------~n~~v~isaltgdgl~el~~a~~~kv 340 (410)
T KOG0410|consen 315 -------KNLDVGISALTGDGLEELLKAEETKV 340 (410)
T ss_pred -------cCCccccccccCccHHHHHHHHHHHh
Confidence 01146899999999999999887654
No 311
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=1.4e-10 Score=86.71 Aligned_cols=161 Identities=17% Similarity=0.093 Sum_probs=98.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCC----ccccC------CCCCcceeEE---------EeCCEEEEEEEcCChhhh
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDER----LVQHQ------PTQYPTSEEL---------SIGKIKFKAFDLGGHQIA 77 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~----~~~~~------~t~~~~~~~~---------~~~~~~~~~~D~~G~~~~ 77 (193)
...+++++++|+..||||||.+++..-. |..+. .|.+..-..+ ......+.++|.||+...
T Consensus 4 ~p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasL 83 (522)
T KOG0461|consen 4 PPSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASL 83 (522)
T ss_pred CCceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHH
Confidence 4567999999999999999999996432 21111 1111111111 112356799999999876
Q ss_pred HhhHHhhcccCCEEEEEEECCChhhHHHHHHH-HHHHHcCCCCCCCcEEEEEeCCCCCCCC----CHHHHHHhhCCCccc
Q 029437 78 RRVWKDYYAKVDAVVYLVDAYDKERFAESKKE-LDALLSDEALANVPFLVLGNKIDIPYAA----SEEELRYHLGLSNFT 152 (193)
Q Consensus 78 ~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~~pviiv~nK~D~~~~~----~~~~~~~~~~~~~~~ 152 (193)
-.......+-.|..++|+|+.....-+...-. +-++ .....++|+||.|..+.. ..++...........
T Consensus 84 IRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~------~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~ 157 (522)
T KOG0461|consen 84 IRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGEL------LCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLES 157 (522)
T ss_pred HHHHHhhhheeeeeeEEEehhcccccccchhhhhhhh------hccceEEEEeccccccchhhhhHHHHHHHHHHHHHHh
Confidence 55444444667999999999765322222211 1122 245668899999987542 223333333222210
Q ss_pred cCCCccccCCCCCcceEEEEeeeecC----CChhhHHHhhhhhc
Q 029437 153 TGKGKVNLADSNVRPLEVFMCSIVRK----MGYGDGFKWLSQYI 192 (193)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~Sa~~g----~gv~el~~~i~~~~ 192 (193)
+ ......+++++||..| +++.|+.+.|..++
T Consensus 158 t---------~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~i 192 (522)
T KOG0461|consen 158 T---------GFDGNSPIVEVSAADGYFKEEMIQELKEALESRI 192 (522)
T ss_pred c---------CcCCCCceeEEecCCCccchhHHHHHHHHHHHhh
Confidence 0 1123478999999999 89999999887764
No 312
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.26 E-value=7e-11 Score=82.07 Aligned_cols=64 Identities=20% Similarity=0.285 Sum_probs=42.8
Q ss_pred EEEEEEEcCChhh----hHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCC
Q 029437 64 IKFKAFDLGGHQI----ARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKI 131 (193)
Q Consensus 64 ~~~~~~D~~G~~~----~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~ 131 (193)
..+.++||||... ...+...+++.+|++++|.++....+-... ..+...... ....+++|.||.
T Consensus 101 ~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~-~~l~~~~~~---~~~~~i~V~nk~ 168 (168)
T PF00350_consen 101 RNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDM-EFLKQMLDP---DKSRTIFVLNKA 168 (168)
T ss_dssp CSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHH-HHHHHHHTT---TCSSEEEEEE-G
T ss_pred cceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHH-HHHHHHhcC---CCCeEEEEEcCC
Confidence 3489999999643 235667778999999999999886543333 333333332 234489999984
No 313
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.25 E-value=2.2e-11 Score=86.13 Aligned_cols=119 Identities=20% Similarity=0.337 Sum_probs=83.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC----ccccCCCCCcceeEEEe-CCEEEEEEEcCChhhhHh-----hHHhhcccCCE
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDER----LVQHQPTQYPTSEELSI-GKIKFKAFDLGGHQIARR-----VWKDYYAKVDA 90 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~----~~~~~~t~~~~~~~~~~-~~~~~~~~D~~G~~~~~~-----~~~~~~~~~d~ 90 (193)
-||+++|.+||||||+=..+...- .....+|++..-..+++ ++.-+++||.+|++.+-. .....+...++
T Consensus 5 kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~v 84 (295)
T KOG3886|consen 5 KKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQV 84 (295)
T ss_pred ceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheehee
Confidence 489999999999999877665333 23344566666666665 458899999999985422 33456789999
Q ss_pred EEEEEECCChhh---HHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHH
Q 029437 91 VVYLVDAYDKER---FAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEE 141 (193)
Q Consensus 91 vl~v~d~~~~~~---~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~ 141 (193)
+++|+|++..+- +..-..-++.++ .+.|...+.+..+|+|+......++
T Consensus 85 li~vFDves~e~~~D~~~yqk~Le~ll--~~SP~AkiF~l~hKmDLv~~d~r~~ 136 (295)
T KOG3886|consen 85 LIYVFDVESREMEKDFHYYQKCLEALL--QNSPEAKIFCLLHKMDLVQEDAREL 136 (295)
T ss_pred eeeeeeccchhhhhhHHHHHHHHHHHH--hcCCcceEEEEEeechhcccchHHH
Confidence 999999987642 222223333343 3457888999999999985544443
No 314
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=4.8e-10 Score=85.07 Aligned_cols=79 Identities=25% Similarity=0.348 Sum_probs=59.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCC--CCCcceeEEEeC------------------CEEEEEEEcCChhh--
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKDERLV-QHQP--TQYPTSEELSIG------------------KIKFKAFDLGGHQI-- 76 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~------------------~~~~~~~D~~G~~~-- 76 (193)
.++++|+|-||+|||||+|+++..... .++| |+.++.+.+... ...+.++|.+|.-.
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 478999999999999999999988732 2444 677766554332 25789999998532
Q ss_pred -----hHhhHHhhcccCCEEEEEEECC
Q 029437 77 -----ARRVWKDYYAKVDAVVYLVDAY 98 (193)
Q Consensus 77 -----~~~~~~~~~~~~d~vl~v~d~~ 98 (193)
....+..-++.+|+++.|+++.
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 2345556678999999999996
No 315
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.23 E-value=1.3e-09 Score=79.56 Aligned_cols=115 Identities=15% Similarity=0.177 Sum_probs=70.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcccc-------CCCC-------Cccee--------------------------
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQH-------QPTQ-------YPTSE-------------------------- 57 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-------~~t~-------~~~~~-------------------------- 57 (193)
-.-..++++|+.|+||||+++++.+..+.+. .|+. .....
T Consensus 24 i~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 103 (240)
T smart00053 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRV 103 (240)
T ss_pred CCCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHh
Confidence 4667899999999999999999988753211 0100 00000
Q ss_pred ------------EEEe--C-CEEEEEEEcCChhh-------------hHhhHHhhcc-cCCEEEEEEECCChhhHHHHHH
Q 029437 58 ------------ELSI--G-KIKFKAFDLGGHQI-------------ARRVWKDYYA-KVDAVVYLVDAYDKERFAESKK 108 (193)
Q Consensus 58 ------------~~~~--~-~~~~~~~D~~G~~~-------------~~~~~~~~~~-~~d~vl~v~d~~~~~~~~~~~~ 108 (193)
.++. + -..+.++||||... ...+...+++ ..+.+++|+|+...-.-+...+
T Consensus 104 ~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ 183 (240)
T smart00053 104 TGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALK 183 (240)
T ss_pred cCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHH
Confidence 0111 1 14689999999631 2334556666 4568999999865322122223
Q ss_pred HHHHHHcCCCCCCCcEEEEEeCCCCCCC
Q 029437 109 ELDALLSDEALANVPFLVLGNKIDIPYA 136 (193)
Q Consensus 109 ~~~~~~~~~~~~~~pviiv~nK~D~~~~ 136 (193)
..+.+ ...+.|+++|+||.|....
T Consensus 184 ia~~l----d~~~~rti~ViTK~D~~~~ 207 (240)
T smart00053 184 LAKEV----DPQGERTIGVITKLDLMDE 207 (240)
T ss_pred HHHHH----HHcCCcEEEEEECCCCCCc
Confidence 33333 2247899999999999743
No 316
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.23 E-value=1.6e-11 Score=80.79 Aligned_cols=88 Identities=17% Similarity=0.108 Sum_probs=62.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccccC--CCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECC
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDERLVQHQ--PTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAY 98 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~ 98 (193)
++++++|+.|+|||+|+.++....+.... +|.+ +........+.++.+++|++..
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~-----------------------~~~~~~~~~~s~~~~~~v~~~~ 57 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG-----------------------IDVYDPTSYESFDVVLQCWRVD 57 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh-----------------------hhhccccccCCCCEEEEEEEcc
Confidence 48999999999999999999776664321 2222 2222234456789999999999
Q ss_pred ChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCC
Q 029437 99 DKERFAESKKELDALLSDEALANVPFLVLGNKIDIP 134 (193)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~ 134 (193)
+.+++... |...+.. ....+.|.++++||.|+.
T Consensus 58 ~~~s~~~~--~~~~i~~-~~k~dl~~~~~~nk~dl~ 90 (124)
T smart00010 58 DRDSADNK--NVPEVLV-GNKSDLPILVGGNRDVLE 90 (124)
T ss_pred CHHHHHHH--hHHHHHh-cCCCCCcEEEEeechhhH
Confidence 99887654 4444433 333578999999999984
No 317
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.20 E-value=9.1e-10 Score=84.92 Aligned_cols=126 Identities=20% Similarity=0.233 Sum_probs=76.5
Q ss_pred chHHHHHHHHHhhCCCCCccEEEEEcCCCCCHHHHHHHHhcC----Ccc-------------cc--C---CCCCcce---
Q 029437 2 FLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDE----RLV-------------QH--Q---PTQYPTS--- 56 (193)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~----~~~-------------~~--~---~t~~~~~--- 56 (193)
+=.+-|++..++.+. .+.|+|+|+.++|||||++++.+. +.. +. . .|.++..
T Consensus 2 e~~~iykDIa~RT~G---~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~ 78 (492)
T TIGR02836 2 EKVDIYKDIAERTQG---DIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPN 78 (492)
T ss_pred cchhHHHHHHHHhCC---cEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccC
Confidence 334567777766554 478999999999999999999876 222 11 1 2333332
Q ss_pred eEEEe--C---CEEEEEEEcCChhhh--------H---------------------hhHHhhcc-cCCEEEEEE-ECC--
Q 029437 57 EELSI--G---KIKFKAFDLGGHQIA--------R---------------------RVWKDYYA-KVDAVVYLV-DAY-- 98 (193)
Q Consensus 57 ~~~~~--~---~~~~~~~D~~G~~~~--------~---------------------~~~~~~~~-~~d~vl~v~-d~~-- 98 (193)
..++. . ..+++++||+|-..- . --....+. ++|..++|. |.+
T Consensus 79 kAvEI~~~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~ 158 (492)
T TIGR02836 79 EAVEININEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTIT 158 (492)
T ss_pred cceEEeccCCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCcc
Confidence 22222 1 368999999992110 0 01233445 789998888 764
Q ss_pred --ChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCC
Q 029437 99 --DKERFAESKKELDALLSDEALANVPFLVLGNKIDI 133 (193)
Q Consensus 99 --~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~ 133 (193)
.++.+....+.+-.-++. .++|+++++||.|-
T Consensus 159 dI~Re~y~~aEe~~i~eLk~---~~kPfiivlN~~dp 192 (492)
T TIGR02836 159 DIPREDYVEAEERVIEELKE---LNKPFIILLNSTHP 192 (492)
T ss_pred ccccccchHHHHHHHHHHHh---cCCCEEEEEECcCC
Confidence 122233333322222222 59999999999993
No 318
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.15 E-value=2.2e-10 Score=85.13 Aligned_cols=76 Identities=22% Similarity=0.266 Sum_probs=55.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCccc---cCCCCCcceeEEEeCCE-----------------EEEEEEcCChhh------
Q 029437 23 ILFLGLDNAGKTTLLHMLKDERLVQ---HQPTQYPTSEELSIGKI-----------------KFKAFDLGGHQI------ 76 (193)
Q Consensus 23 i~v~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~-----------------~~~~~D~~G~~~------ 76 (193)
|+++|.||||||||+|++++..... ...|..++.+.+.+.+. .+.++|+||...
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 5799999999999999999887532 23366777666665542 489999999432
Q ss_pred -hHhhHHhhcccCCEEEEEEECC
Q 029437 77 -ARRVWKDYYAKVDAVVYLVDAY 98 (193)
Q Consensus 77 -~~~~~~~~~~~~d~vl~v~d~~ 98 (193)
....+...++.+|++++|+|+.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 1222334457899999999974
No 319
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=99.15 E-value=5e-11 Score=84.55 Aligned_cols=142 Identities=17% Similarity=0.219 Sum_probs=91.3
Q ss_pred CCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECC----------ChhhHHHHHHHHHHHHcCCCC
Q 029437 50 PTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAY----------DKERFAESKKELDALLSDEAL 119 (193)
Q Consensus 50 ~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~----------~~~~~~~~~~~~~~~~~~~~~ 119 (193)
||.+...+.++..++.+++.|.+|+.+.+.-|.+++.++..+++++..+ ++...++.......++.-...
T Consensus 185 PTTGi~eypfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF 264 (359)
T KOG0085|consen 185 PTTGIIEYPFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWF 264 (359)
T ss_pred CcccceecCcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccc
Confidence 4556666677777888999999999988888888888777776665543 355677777888888888888
Q ss_pred CCCcEEEEEeCCCCCCC-CCHHHHHHhhCCCcc-----ccCCC----ccccCCCCC-cceEEEEeeeecCCChhhHHHhh
Q 029437 120 ANVPFLVLGNKIDIPYA-ASEEELRYHLGLSNF-----TTGKG----KVNLADSNV-RPLEVFMCSIVRKMGYGDGFKWL 188 (193)
Q Consensus 120 ~~~pviiv~nK~D~~~~-~~~~~~~~~~~~~~~-----~~~~~----~~~~~~~~~-~~~~~~~~Sa~~g~gv~el~~~i 188 (193)
.+.++|+..||.|+... ..-+.+.+.+-...- +.++. +..--++.. ..+-...+.|+.-+|+.-+|..+
T Consensus 265 ~nssVIlFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaV 344 (359)
T KOG0085|consen 265 QNSSVILFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAV 344 (359)
T ss_pred cCCceEEEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHH
Confidence 89999999999998732 112222222211000 00000 000000111 22345578899999999999887
Q ss_pred hhh
Q 029437 189 SQY 191 (193)
Q Consensus 189 ~~~ 191 (193)
.+.
T Consensus 345 kDt 347 (359)
T KOG0085|consen 345 KDT 347 (359)
T ss_pred HHH
Confidence 654
No 320
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.15 E-value=1.1e-10 Score=88.40 Aligned_cols=168 Identities=19% Similarity=0.113 Sum_probs=100.5
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCC----------------CCCcceeEEEe-----------------
Q 029437 16 LWQKEAKILFLGLDNAGKTTLLHMLKDERLV-QHQP----------------TQYPTSEELSI----------------- 61 (193)
Q Consensus 16 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~----------------t~~~~~~~~~~----------------- 61 (193)
..+.++.+++.|+.++|||||.-.|...... .... +.+....-+-+
T Consensus 113 ~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~ 192 (527)
T COG5258 113 EAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEK 192 (527)
T ss_pred CCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHH
Confidence 3567899999999999999999988655422 1111 11111111111
Q ss_pred ------CCEEEEEEEcCChhhhHhhH--HhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCC
Q 029437 62 ------GKIKFKAFDLGGHQIARRVW--KDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDI 133 (193)
Q Consensus 62 ------~~~~~~~~D~~G~~~~~~~~--~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~ 133 (193)
.+.-+.++||.|++.+-... ...-+..|..++++-+++.-+ .+.+...-+ ......|+++++||+|+
T Consensus 193 ~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~--~~tkEHLgi---~~a~~lPviVvvTK~D~ 267 (527)
T COG5258 193 AAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVT--KMTKEHLGI---ALAMELPVIVVVTKIDM 267 (527)
T ss_pred hHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcc--hhhhHhhhh---hhhhcCCEEEEEEeccc
Confidence 12457999999999875433 334468899999999988743 222222222 22358999999999999
Q ss_pred CCCCCHHHHHH----hhC----CCccccCCCcc---ccC-CCCCcceEEEEeeeecCCChhhHHHhh
Q 029437 134 PYAASEEELRY----HLG----LSNFTTGKGKV---NLA-DSNVRPLEVFMCSIVRKMGYGDGFKWL 188 (193)
Q Consensus 134 ~~~~~~~~~~~----~~~----~~~~~~~~~~~---~~~-~~~~~~~~~~~~Sa~~g~gv~el~~~i 188 (193)
.+......+.+ .+. .++.....+.. ..+ ......+++|.+|+.+|+|++-|.+.+
T Consensus 268 ~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f 334 (527)
T COG5258 268 VPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFF 334 (527)
T ss_pred CcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHH
Confidence 86554433222 222 22221111111 111 111135899999999999987555443
No 321
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=8.1e-10 Score=81.05 Aligned_cols=158 Identities=19% Similarity=0.161 Sum_probs=97.5
Q ss_pred CCCCCccEEEEEcCCCCCHHHHHHHHhcCCc----------cc---------cCCCCCcceeEEEeCCEEEEEEEcCChh
Q 029437 15 GLWQKEAKILFLGLDNAGKTTLLHMLKDERL----------VQ---------HQPTQYPTSEELSIGKIKFKAFDLGGHQ 75 (193)
Q Consensus 15 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~----------~~---------~~~t~~~~~~~~~~~~~~~~~~D~~G~~ 75 (193)
.+.+.+++|+.+|+.+-|||||..+++..-. .+ ...|+...-...+..+..+...|+||+-
T Consensus 7 ~r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHa 86 (394)
T COG0050 7 ERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHA 86 (394)
T ss_pred cCCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChH
Confidence 3578899999999999999999988753211 11 1113233333344567889999999999
Q ss_pred hhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCc-EEEEEeCCCCCCCCCHHH--------HHHhh
Q 029437 76 IARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVP-FLVLGNKIDIPYAASEEE--------LRYHL 146 (193)
Q Consensus 76 ~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~D~~~~~~~~~--------~~~~~ 146 (193)
.|-..+.....+.|+.|+|++++|..--+... .++-... -++| +++++||+|+.+..+.-+ +...+
T Consensus 87 DYvKNMItgAaqmDgAILVVsA~dGpmPqTrE----HiLlarq-vGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y 161 (394)
T COG0050 87 DYVKNMITGAAQMDGAILVVAATDGPMPQTRE----HILLARQ-VGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEY 161 (394)
T ss_pred HHHHHHhhhHHhcCccEEEEEcCCCCCCcchh----hhhhhhh-cCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHc
Confidence 88765555557789999999998853221111 1111111 2554 678899999986433322 23333
Q ss_pred CCCccccCCCccccCCCCCcceEEEEeeeec-CC-------ChhhHHHhhhhhc
Q 029437 147 GLSNFTTGKGKVNLADSNVRPLEVFMCSIVR-KM-------GYGDGFKWLSQYI 192 (193)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~-g~-------gv~el~~~i~~~~ 192 (193)
+++. ...+++..||.. .+ .+.||++++..++
T Consensus 162 ~f~g---------------d~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yi 200 (394)
T COG0050 162 GFPG---------------DDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYI 200 (394)
T ss_pred CCCC---------------CCcceeechhhhhhcCCcchHHHHHHHHHHHHhcC
Confidence 3333 345677777644 22 3466666666554
No 322
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.13 E-value=1.8e-09 Score=87.73 Aligned_cols=115 Identities=17% Similarity=0.149 Sum_probs=71.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccccC----CCCCcceeEEEeCCEEEEEEEcCChhhh-------Hhh---HHhh
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQ----PTQYPTSEELSIGKIKFKAFDLGGHQIA-------RRV---WKDY 84 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~D~~G~~~~-------~~~---~~~~ 84 (193)
..++|+++|.+|+||||++|++++....... .|...........+..+.++||||.... ..+ ...+
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~ 196 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKF 196 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHH
Confidence 3468999999999999999999987643221 1222222223446788999999996532 111 1122
Q ss_pred cc--cCCEEEEEEECCChhhH---HHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC
Q 029437 85 YA--KVDAVVYLVDAYDKERF---AESKKELDALLSDEALANVPFLVLGNKIDIPY 135 (193)
Q Consensus 85 ~~--~~d~vl~v~d~~~~~~~---~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~ 135 (193)
+. .+|++|+|..+...... ..+.+.+..++... --.-+||++|+.|..+
T Consensus 197 Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~--Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 197 IKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPS--IWFNAIVTLTHAASAP 250 (763)
T ss_pred HhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHH--hHcCEEEEEeCCccCC
Confidence 23 57999999887532211 12334444443321 1245799999999885
No 323
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.11 E-value=8.4e-10 Score=84.71 Aligned_cols=78 Identities=23% Similarity=0.273 Sum_probs=56.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc---cCCCCCcceeEEEeCC-----------------EEEEEEEcCChhh----
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDERLVQ---HQPTQYPTSEELSIGK-----------------IKFKAFDLGGHQI---- 76 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~-----------------~~~~~~D~~G~~~---- 76 (193)
++|+++|.||+|||||+|++++..... ...|..++.+.+...+ ..+.++|+||...
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 689999999999999999999877321 2236667666655543 2589999999532
Q ss_pred ---hHhhHHhhcccCCEEEEEEECC
Q 029437 77 ---ARRVWKDYYAKVDAVVYLVDAY 98 (193)
Q Consensus 77 ---~~~~~~~~~~~~d~vl~v~d~~ 98 (193)
....+...++.+|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 1122333467899999999984
No 324
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=5.3e-10 Score=89.86 Aligned_cols=113 Identities=19% Similarity=0.213 Sum_probs=80.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccccCC----------C----------CCcceeEEE-----eCCEEEEEEEc
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQP----------T----------QYPTSEELS-----IGKIKFKAFDL 71 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~----------t----------~~~~~~~~~-----~~~~~~~~~D~ 71 (193)
...-.+++++|+-.+|||+|+..|....-+...+ + +..+..++- ....-+++.||
T Consensus 125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT 204 (971)
T KOG0468|consen 125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT 204 (971)
T ss_pred cceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecC
Confidence 3455689999999999999999997654332111 0 011111111 12356899999
Q ss_pred CChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCC
Q 029437 72 GGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIP 134 (193)
Q Consensus 72 ~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~ 134 (193)
|||..+.......+..+|++++|+|+.+.-.+ +....++...+ .+.|+++++||+|+.
T Consensus 205 PGHVnF~DE~ta~l~~sDgvVlvvDv~EGVml-ntEr~ikhaiq----~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 205 PGHVNFSDETTASLRLSDGVVLVVDVAEGVML-NTERIIKHAIQ----NRLPIVVVINKVDRL 262 (971)
T ss_pred CCcccchHHHHHHhhhcceEEEEEEcccCcee-eHHHHHHHHHh----ccCcEEEEEehhHHH
Confidence 99999998888888999999999999887554 33344444444 489999999999976
No 325
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=99.05 E-value=7.3e-10 Score=80.00 Aligned_cols=82 Identities=22% Similarity=0.485 Sum_probs=68.5
Q ss_pred CcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCC----------hhhHHHHHHHHHHHHcCCCCCCC
Q 029437 53 YPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYD----------KERFAESKKELDALLSDEALANV 122 (193)
Q Consensus 53 ~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 122 (193)
++....+..+..+++.+|.+|+...+.-|-.++..+.++|+|+.+++ ...+++...+.+.+++......+
T Consensus 191 GIfet~FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~ti 270 (379)
T KOG0099|consen 191 GIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTI 270 (379)
T ss_pred ceeeEEEeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhh
Confidence 34444556667889999999999998888889999999999999864 35677888888888888788899
Q ss_pred cEEEEEeCCCCC
Q 029437 123 PFLVLGNKIDIP 134 (193)
Q Consensus 123 pviiv~nK~D~~ 134 (193)
.+|+.+||.|+.
T Consensus 271 svIlFLNKqDll 282 (379)
T KOG0099|consen 271 SVILFLNKQDLL 282 (379)
T ss_pred heeEEecHHHHH
Confidence 999999999976
No 326
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.05 E-value=1e-09 Score=75.52 Aligned_cols=69 Identities=17% Similarity=0.233 Sum_probs=45.7
Q ss_pred HHHHHHHHHhhCCCCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeC-CEEEEEEEcCC
Q 029437 4 LDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIG-KIKFKAFDLGG 73 (193)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~D~~G 73 (193)
+++++.++.-. ......+|+++|.||+|||||+|++.+.......++.+.+.....+. +..+.++||||
T Consensus 87 ~~~l~~~~~~~-~~~~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~liDtPG 156 (157)
T cd01858 87 IQLLRQFSKLH-SDKKQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITLMKRIYLIDCPG 156 (157)
T ss_pred HHHHHHHHhhh-ccccceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEcCCCEEEEECcC
Confidence 45555544321 12346789999999999999999999877665555554433332222 23478999999
No 327
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.04 E-value=9.2e-10 Score=78.09 Aligned_cols=102 Identities=19% Similarity=0.207 Sum_probs=63.9
Q ss_pred hhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC-HHHHHHhh-CCCcc
Q 029437 74 HQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAAS-EEELRYHL-GLSNF 151 (193)
Q Consensus 74 ~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~-~~~~~~~~-~~~~~ 151 (193)
...++.++..++..+|++++|+|+.++..- .. ..+.. ...+.|+++|+||+|+.+... ..+..... ....
T Consensus 21 ~~~~~~~l~~~~~~ad~il~VvD~~~~~~~--~~---~~l~~--~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~- 92 (190)
T cd01855 21 EDFILNLLSSISPKKALVVHVVDIFDFPGS--LI---PRLRL--FGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAA- 92 (190)
T ss_pred HHHHHHHHHhcccCCcEEEEEEECccCCCc--cc---hhHHH--hcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHH-
Confidence 334677888889999999999999876421 11 11111 124789999999999974322 22221111 0000
Q ss_pred ccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 152 TTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
. ........++++||++|.|+++++++|.+.+
T Consensus 93 -~--------~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l 124 (190)
T cd01855 93 -A--------GLGLKPKDVILISAKKGWGVEELINAIKKLA 124 (190)
T ss_pred -h--------hcCCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 0 0000123579999999999999999998754
No 328
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.02 E-value=7.9e-10 Score=75.93 Aligned_cols=93 Identities=17% Similarity=0.161 Sum_probs=59.9
Q ss_pred HhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCc
Q 029437 78 RRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGK 157 (193)
Q Consensus 78 ~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (193)
+.+..+...++|++++|+|+.++..... ..+...+. ..+.|+++++||+|+.+.....+.......
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~--~~l~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~--------- 68 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRS--RKLERYVL---ELGKKLLIVLNKADLVPKEVLEKWKSIKES--------- 68 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCC--HHHHHHHH---hCCCcEEEEEEhHHhCCHHHHHHHHHHHHh---------
Confidence 4566777788999999999987643211 11222222 136899999999998632111111100000
Q ss_pred cccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 158 VNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 158 ~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
...+++.+||++|.|++++++.|.+.+
T Consensus 69 --------~~~~~~~iSa~~~~gi~~L~~~l~~~~ 95 (156)
T cd01859 69 --------EGIPVVYVSAKERLGTKILRRTIKELA 95 (156)
T ss_pred --------CCCcEEEEEccccccHHHHHHHHHHHH
Confidence 124579999999999999999998653
No 329
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.02 E-value=1.1e-08 Score=81.25 Aligned_cols=129 Identities=18% Similarity=0.214 Sum_probs=86.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccccC-CCC--C--cceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEE
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQ-PTQ--Y--PTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~-~t~--~--~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~v 91 (193)
.++-+.+.++|+.++|||.+++++.++.+.... .+. . .+...+......+.+-|.+.. ....+.... ..+|.+
T Consensus 422 ~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~ 499 (625)
T KOG1707|consen 422 DRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVA 499 (625)
T ss_pred cceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeE
Confidence 356689999999999999999999998766521 111 1 122222333344555555543 221111111 678999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC-----CCCHHHHHHhhCCCc
Q 029437 92 VYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY-----AASEEELRYHLGLSN 150 (193)
Q Consensus 92 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~-----~~~~~~~~~~~~~~~ 150 (193)
.++||++++.++......+...... ...|+++|++|+|+.. ...+++...++++..
T Consensus 500 ~~~YDsS~p~sf~~~a~v~~~~~~~---~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~ 560 (625)
T KOG1707|consen 500 CLVYDSSNPRSFEYLAEVYNKYFDL---YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPP 560 (625)
T ss_pred EEecccCCchHHHHHHHHHHHhhhc---cCCceEEEeeccccchhhhccCCChHHHHHhcCCCC
Confidence 9999999999988777766665333 6899999999999973 234566766666555
No 330
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.01 E-value=7.9e-09 Score=78.18 Aligned_cols=117 Identities=18% Similarity=0.248 Sum_probs=71.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcccc-----------CCCCCcceeEEE--eC--CEEEEEEEcCChhhh-----
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQH-----------QPTQYPTSEELS--IG--KIKFKAFDLGGHQIA----- 77 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-----------~~t~~~~~~~~~--~~--~~~~~~~D~~G~~~~----- 77 (193)
--.++|+++|++|+||||++|.|++...... .++......... .+ ...++++||||-..+
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~ 100 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK 100 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence 4669999999999999999999987643221 122222222222 22 267999999992111
Q ss_pred ---------HhhHHhhc--------------ccCCEEEEEEECCChhhHHHHH-HHHHHHHcCCCCCCCcEEEEEeCCCC
Q 029437 78 ---------RRVWKDYY--------------AKVDAVVYLVDAYDKERFAESK-KELDALLSDEALANVPFLVLGNKIDI 133 (193)
Q Consensus 78 ---------~~~~~~~~--------------~~~d~vl~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~pviiv~nK~D~ 133 (193)
..++..++ .++|++||.+..+.- ++..++ +.+..+- ..+-+|-|+.|+|.
T Consensus 101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh-~l~~~DIe~Mk~ls-----~~vNlIPVI~KaD~ 174 (373)
T COG5019 101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH-GLKPLDIEAMKRLS-----KRVNLIPVIAKADT 174 (373)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC-CCCHHHHHHHHHHh-----cccCeeeeeecccc
Confidence 11111111 267999999987543 222232 3444442 36778999999999
Q ss_pred CCCCCHH
Q 029437 134 PYAASEE 140 (193)
Q Consensus 134 ~~~~~~~ 140 (193)
....+..
T Consensus 175 lT~~El~ 181 (373)
T COG5019 175 LTDDELA 181 (373)
T ss_pred CCHHHHH
Confidence 8544433
No 331
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=99.01 E-value=1.4e-09 Score=79.13 Aligned_cols=161 Identities=20% Similarity=0.167 Sum_probs=92.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc--cCCCCCccee-EEEeCCEEEEEEEcCCh----------hhhHhhHHhh
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQ--HQPTQYPTSE-ELSIGKIKFKAFDLGGH----------QIARRVWKDY 84 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~--~~~t~~~~~~-~~~~~~~~~~~~D~~G~----------~~~~~~~~~~ 84 (193)
....+++++|.+|+|||||++.+.+..-.. ..++.+.... ....-+-.+.++|.||- ..+..+.+.+
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y 213 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGKSWYEVDLPGYGRAGYGFELPADWDKFTKSY 213 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccceEEEEecCCcccccCCccCcchHhHhHHHH
Confidence 455899999999999999999998776443 1223333222 22223458899999991 1122333333
Q ss_pred cc---cCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC--HHHHHHhhCCCccccCCCccc
Q 029437 85 YA---KVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAAS--EEELRYHLGLSNFTTGKGKVN 159 (193)
Q Consensus 85 ~~---~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 159 (193)
+. +.-.+++.+|++.+ ++..+....+++.+ .++|..+|+||+|.....- ...........+. +....+
T Consensus 214 ~leR~nLv~~FLLvd~sv~--i~~~D~~~i~~~ge---~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~--~l~~~~ 286 (320)
T KOG2486|consen 214 LLERENLVRVFLLVDASVP--IQPTDNPEIAWLGE---NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQ--GLIRGV 286 (320)
T ss_pred HHhhhhhheeeeeeeccCC--CCCCChHHHHHHhh---cCCCeEEeeehhhhhhhccccccCccccceeehh--hccccc
Confidence 32 34466777888665 33344444444433 5899999999999873321 0000000011010 000001
Q ss_pred cCCCCCcceEEEEeeeecCCChhhHHHhhh
Q 029437 160 LADSNVRPLEVFMCSIVRKMGYGDGFKWLS 189 (193)
Q Consensus 160 ~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~ 189 (193)
.. ...+|+.+|+.++.|+++|+-.|.
T Consensus 287 f~----~~~Pw~~~Ssvt~~Grd~Ll~~i~ 312 (320)
T KOG2486|consen 287 FL----VDLPWIYVSSVTSLGRDLLLLHIA 312 (320)
T ss_pred ee----ccCCceeeecccccCceeeeeehh
Confidence 11 234577899999999998875554
No 332
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=99.00 E-value=8.6e-10 Score=86.90 Aligned_cols=156 Identities=18% Similarity=0.223 Sum_probs=110.1
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCc---ceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEE
Q 029437 16 LWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYP---TSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVV 92 (193)
Q Consensus 16 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~---~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl 92 (193)
+.-.++|++|+|..++|||+|++++....+.+...+.+. ....+.....-+.+.|.+|....+ +-.++|++|
T Consensus 26 rsipelk~givg~~~sgktalvhr~ltgty~~~e~~e~~~~kkE~vv~gqs~lLlirdeg~~~~aQ-----ft~wvdavI 100 (749)
T KOG0705|consen 26 RSIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGGRFKKEVVVDGQSHLLLIRDEGGHPDAQ-----FCQWVDAVV 100 (749)
T ss_pred cccchhheeeeecccCCceeeeeeeccceeccccCCcCccceeeEEeeccceEeeeecccCCchhh-----hhhhccceE
Confidence 456889999999999999999999999998875543332 233344566788888988854333 336789999
Q ss_pred EEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC---CCCHHHHHHhhCCCccccCCCccccCCCCCcceE
Q 029437 93 YLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY---AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLE 169 (193)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
+||...+..+++.+..+...+-.......+|+++++++.-..- ....+.-...+..+. ..+.
T Consensus 101 fvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~---------------krcs 165 (749)
T KOG0705|consen 101 FVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQM---------------KRCS 165 (749)
T ss_pred EEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhc---------------Cccc
Confidence 9999999999998888777775444556788888888643321 111111111121222 3467
Q ss_pred EEEeeeecCCChhhHHHhhhhh
Q 029437 170 VFMCSIVRKMGYGDGFKWLSQY 191 (193)
Q Consensus 170 ~~~~Sa~~g~gv~el~~~i~~~ 191 (193)
++++++.+|.++...|+.+...
T Consensus 166 y~et~atyGlnv~rvf~~~~~k 187 (749)
T KOG0705|consen 166 YYETCATYGLNVERVFQEVAQK 187 (749)
T ss_pred eeecchhhhhhHHHHHHHHHHH
Confidence 8999999999999999887654
No 333
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.99 E-value=2.1e-09 Score=74.85 Aligned_cols=57 Identities=26% Similarity=0.339 Sum_probs=41.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccee--EEEeCCEEEEEEEcCCh
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSE--ELSIGKIKFKAFDLGGH 74 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~D~~G~ 74 (193)
....++++++|.||+|||||+|++.+.......+.++.+.. .+..+ ..+.++||||.
T Consensus 114 ~~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~~-~~~~l~DtPGi 172 (172)
T cd04178 114 IKTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHLD-KKVKLLDSPGI 172 (172)
T ss_pred cccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEeC-CCEEEEECcCC
Confidence 34568999999999999999999998876554444443332 22222 36889999993
No 334
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.96 E-value=3.2e-08 Score=71.37 Aligned_cols=86 Identities=17% Similarity=0.216 Sum_probs=61.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC--ccccC-CCCCcceeEEEeCCEEEEEEEcCChhhhHhhH-------HhhcccC
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDER--LVQHQ-PTQYPTSEELSIGKIKFKAFDLGGHQIARRVW-------KDYYAKV 88 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~--~~~~~-~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~-------~~~~~~~ 88 (193)
-..|++++|.|.+|||||+..++... ...+. .|.-...+.+.+.+..+++.|+||.-...+.- -...+.+
T Consensus 61 GdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavArta 140 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVARTA 140 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEeecc
Confidence 35689999999999999999987543 22332 34455667788999999999999954432211 2234678
Q ss_pred CEEEEEEECCChhhHH
Q 029437 89 DAVVYLVDAYDKERFA 104 (193)
Q Consensus 89 d~vl~v~d~~~~~~~~ 104 (193)
|.+++|.|++..+.-.
T Consensus 141 DlilMvLDatk~e~qr 156 (364)
T KOG1486|consen 141 DLILMVLDATKSEDQR 156 (364)
T ss_pred cEEEEEecCCcchhHH
Confidence 9999999998765433
No 335
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.96 E-value=6.8e-09 Score=78.97 Aligned_cols=115 Identities=17% Similarity=0.244 Sum_probs=71.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccccC----------CCCCcceeEEEe--C--CEEEEEEEcCChhhh------
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQ----------PTQYPTSEELSI--G--KIKFKAFDLGGHQIA------ 77 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~----------~t~~~~~~~~~~--~--~~~~~~~D~~G~~~~------ 77 (193)
--.++++++|++|.|||||+|.|+...+.... .|.......... + ..+++++||||-...
T Consensus 19 G~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~ 98 (366)
T KOG2655|consen 19 GFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNC 98 (366)
T ss_pred CCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCccccccccc
Confidence 35699999999999999999999887554321 122222222222 2 267899999992110
Q ss_pred --------HhhHHhh-----------cc--cCCEEEEEEECCChhhHHHHH-HHHHHHHcCCCCCCCcEEEEEeCCCCCC
Q 029437 78 --------RRVWKDY-----------YA--KVDAVVYLVDAYDKERFAESK-KELDALLSDEALANVPFLVLGNKIDIPY 135 (193)
Q Consensus 78 --------~~~~~~~-----------~~--~~d~vl~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~pviiv~nK~D~~~ 135 (193)
...+..+ +. ++|++||.+..+.. ++..++ +.++.+- ..+.+|-|+.|+|...
T Consensus 99 w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~Di~~Mk~l~-----~~vNiIPVI~KaD~lT 172 (366)
T KOG2655|consen 99 WRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLDIEFMKKLS-----KKVNLIPVIAKADTLT 172 (366)
T ss_pred chhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhhHHHHHHHh-----ccccccceeeccccCC
Confidence 1111111 12 78999999987432 122222 3333331 4788899999999885
Q ss_pred CCC
Q 029437 136 AAS 138 (193)
Q Consensus 136 ~~~ 138 (193)
...
T Consensus 173 ~~E 175 (366)
T KOG2655|consen 173 KDE 175 (366)
T ss_pred HHH
Confidence 443
No 336
>PRK12289 GTPase RsgA; Reviewed
Probab=98.95 E-value=3.7e-09 Score=81.40 Aligned_cols=88 Identities=11% Similarity=0.070 Sum_probs=61.6
Q ss_pred hhcccCCEEEEEEECCChh-hHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccC
Q 029437 83 DYYAKVDAVVYLVDAYDKE-RFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLA 161 (193)
Q Consensus 83 ~~~~~~d~vl~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (193)
..+.++|.+++|+|+.++. ....+..++.... ..++|+++|+||+|+.......++.+.+..
T Consensus 85 ~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~----~~~ip~ILVlNK~DLv~~~~~~~~~~~~~~------------- 147 (352)
T PRK12289 85 PPVANADQILLVFALAEPPLDPWQLSRFLVKAE----STGLEIVLCLNKADLVSPTEQQQWQDRLQQ------------- 147 (352)
T ss_pred hhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHH----HCCCCEEEEEEchhcCChHHHHHHHHHHHh-------------
Confidence 3468899999999998775 3445556655442 258999999999999743222223332211
Q ss_pred CCCCcceEEEEeeeecCCChhhHHHhhhhh
Q 029437 162 DSNVRPLEVFMCSIVRKMGYGDGFKWLSQY 191 (193)
Q Consensus 162 ~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~ 191 (193)
...+++.+||++|.|+++++++|...
T Consensus 148 ----~g~~v~~iSA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 148 ----WGYQPLFISVETGIGLEALLEQLRNK 173 (352)
T ss_pred ----cCCeEEEEEcCCCCCHHHHhhhhccc
Confidence 12468999999999999999988653
No 337
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.94 E-value=3.3e-09 Score=72.97 Aligned_cols=89 Identities=21% Similarity=0.200 Sum_probs=57.3
Q ss_pred hcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCC
Q 029437 84 YYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADS 163 (193)
Q Consensus 84 ~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (193)
.+..+|.+++|+|+.++..- ....+...+... ..+.|+++|+||+|+.+.....+....+....
T Consensus 5 ~l~~aD~il~VvD~~~p~~~--~~~~i~~~l~~~-~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~------------- 68 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGT--RCKHVEEYLKKE-KPHKHLIFVLNKCDLVPTWVTARWVKILSKEY------------- 68 (157)
T ss_pred hhhhCCEEEEEEECCCCccc--cCHHHHHHHHhc-cCCCCEEEEEEchhcCCHHHHHHHHHHHhcCC-------------
Confidence 35789999999999887321 122233333221 24689999999999964322222333332211
Q ss_pred CCcceEEEEeeeecCCChhhHHHhhhhh
Q 029437 164 NVRPLEVFMCSIVRKMGYGDGFKWLSQY 191 (193)
Q Consensus 164 ~~~~~~~~~~Sa~~g~gv~el~~~i~~~ 191 (193)
. ..++.+||+.+.|++++.++|...
T Consensus 69 --~-~~~~~iSa~~~~~~~~L~~~l~~~ 93 (157)
T cd01858 69 --P-TIAFHASINNPFGKGSLIQLLRQF 93 (157)
T ss_pred --c-EEEEEeeccccccHHHHHHHHHHH
Confidence 1 236889999999999999998754
No 338
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=98.90 E-value=4e-09 Score=80.05 Aligned_cols=165 Identities=21% Similarity=0.141 Sum_probs=99.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-------------------cCCCCCccee-----------------EEEe-
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQ-------------------HQPTQYPTSE-----------------ELSI- 61 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-------------------~~~t~~~~~~-----------------~~~~- 61 (193)
-+.+++++|+..+|||||+..+++.+... ....++.... .++|
T Consensus 132 ~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWv 211 (641)
T KOG0463|consen 132 IEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWV 211 (641)
T ss_pred eeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccce
Confidence 46899999999999999998886654320 0001111111 1111
Q ss_pred -----CCEEEEEEEcCChhhhHh--hHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCC
Q 029437 62 -----GKIKFKAFDLGGHQIARR--VWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIP 134 (193)
Q Consensus 62 -----~~~~~~~~D~~G~~~~~~--~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~ 134 (193)
...-++++|++|+++|-. .+.+.-+-.|..++++.++-. +.....+.+...-...+|+.+|+||+|+.
T Consensus 212 kIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaG-----IiGmTKEHLgLALaL~VPVfvVVTKIDMC 286 (641)
T KOG0463|consen 212 KICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAG-----IIGMTKEHLGLALALHVPVFVVVTKIDMC 286 (641)
T ss_pred eeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEeccccc-----ceeccHHhhhhhhhhcCcEEEEEEeeccC
Confidence 123479999999998854 333334567888888887543 22222333332333589999999999999
Q ss_pred CCCCHHHHHHhhC----CCcc------ccCCCcc---ccCCCCCcceEEEEeeeecCCChhhHHHhh
Q 029437 135 YAASEEELRYHLG----LSNF------TTGKGKV---NLADSNVRPLEVFMCSIVRKMGYGDGFKWL 188 (193)
Q Consensus 135 ~~~~~~~~~~~~~----~~~~------~~~~~~~---~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i 188 (193)
++...+|.++.+. .+.. ....+.. ..+=...+-+++|.+|..+|.|++-+..++
T Consensus 287 PANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmFL 353 (641)
T KOG0463|consen 287 PANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMFL 353 (641)
T ss_pred cHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHHH
Confidence 8876666444332 1111 1111111 111112256899999999999998776554
No 339
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.86 E-value=3.9e-08 Score=74.53 Aligned_cols=122 Identities=24% Similarity=0.219 Sum_probs=80.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc----cCCCCCcceeEEEeC-------------------C------------
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQ----HQPTQYPTSEELSIG-------------------K------------ 63 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~-------------------~------------ 63 (193)
...=|+++|.=..||||+++.++..+++. ..||.+.-...+.++ +
T Consensus 57 ~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf 136 (532)
T KOG1954|consen 57 AKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRF 136 (532)
T ss_pred cCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHH
Confidence 34569999999999999999999999875 334443322211111 0
Q ss_pred ----------EEEEEEEcCChh-----------hhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCC
Q 029437 64 ----------IKFKAFDLGGHQ-----------IARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANV 122 (193)
Q Consensus 64 ----------~~~~~~D~~G~~-----------~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (193)
-.++++||||.- .+....+.+..++|.++++||...-+--.+..+.+..+ ....-
T Consensus 137 ~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aL----kG~Ed 212 (532)
T KOG1954|consen 137 MCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDAL----KGHED 212 (532)
T ss_pred HHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHh----hCCcc
Confidence 248999999942 23456677788999999999985433222333333333 33355
Q ss_pred cEEEEEeCCCCCCCCCHHHHHHhhC
Q 029437 123 PFLVLGNKIDIPYAASEEELRYHLG 147 (193)
Q Consensus 123 pviiv~nK~D~~~~~~~~~~~~~~~ 147 (193)
.+-+|.||.|.. ..++++..++
T Consensus 213 kiRVVLNKADqV---dtqqLmRVyG 234 (532)
T KOG1954|consen 213 KIRVVLNKADQV---DTQQLMRVYG 234 (532)
T ss_pred eeEEEecccccc---CHHHHHHHHH
Confidence 677899999986 5556555554
No 340
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.85 E-value=8.9e-09 Score=77.56 Aligned_cols=88 Identities=18% Similarity=0.063 Sum_probs=62.6
Q ss_pred HhhcccCCEEEEEEECCChh-hHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCcccc
Q 029437 82 KDYYAKVDAVVYLVDAYDKE-RFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNL 160 (193)
Q Consensus 82 ~~~~~~~d~vl~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (193)
+..+.++|.+++|+|+.++. ++..+.+|+..... .++|+++|+||+|+.+........... ..
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~~~~~~~~~~~--~~---------- 136 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDDEEEELELVEA--LA---------- 136 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCChHHHHHHHHHH--Hh----------
Confidence 44578999999999999887 77777776665532 478999999999997431111111111 00
Q ss_pred CCCCCcceEEEEeeeecCCChhhHHHhhhh
Q 029437 161 ADSNVRPLEVFMCSIVRKMGYGDGFKWLSQ 190 (193)
Q Consensus 161 ~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~ 190 (193)
...+++.+||+++.|+++++++|..
T Consensus 137 -----~g~~v~~vSA~~g~gi~~L~~~L~~ 161 (287)
T cd01854 137 -----LGYPVLAVSAKTGEGLDELREYLKG 161 (287)
T ss_pred -----CCCeEEEEECCCCccHHHHHhhhcc
Confidence 1257899999999999999988764
No 341
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.84 E-value=2e-08 Score=76.25 Aligned_cols=165 Identities=21% Similarity=0.208 Sum_probs=95.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-----------------cCCCCCcceeEE---------Ee-----------
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQ-----------------HQPTQYPTSEEL---------SI----------- 61 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-----------------~~~t~~~~~~~~---------~~----------- 61 (193)
-++|++++|...+|||||+..++.++... ...|....-+.+ .+
T Consensus 166 ievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e 245 (591)
T KOG1143|consen 166 IEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE 245 (591)
T ss_pred eEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence 46899999999999999998886554321 001111110000 11
Q ss_pred -CCEEEEEEEcCChhhhHhhHHhhcc--cCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC
Q 029437 62 -GKIKFKAFDLGGHQIARRVWKDYYA--KVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAAS 138 (193)
Q Consensus 62 -~~~~~~~~D~~G~~~~~~~~~~~~~--~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~ 138 (193)
...-++++|++|+.+|....-..+. ..|..++|+++...... ..++.+--+ ...++|+.++++|+|+.....
T Consensus 246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~-tTrEHLgl~----~AL~iPfFvlvtK~Dl~~~~~ 320 (591)
T KOG1143|consen 246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITW-TTREHLGLI----AALNIPFFVLVTKMDLVDRQG 320 (591)
T ss_pred hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcc-ccHHHHHHH----HHhCCCeEEEEEeeccccchh
Confidence 1234799999999988754433333 46889999998665321 111111111 124899999999999986544
Q ss_pred HHHHHHhhC-------CCcccc--CCCccccC----CCCCcceEEEEeeeecCCChhhHHHhh
Q 029437 139 EEELRYHLG-------LSNFTT--GKGKVNLA----DSNVRPLEVFMCSIVRKMGYGDGFKWL 188 (193)
Q Consensus 139 ~~~~~~~~~-------~~~~~~--~~~~~~~~----~~~~~~~~~~~~Sa~~g~gv~el~~~i 188 (193)
.+...+++. +..... ....+.+. ....+..++|-+|+.+|+|++-+..++
T Consensus 321 ~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fL 383 (591)
T KOG1143|consen 321 LKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFL 383 (591)
T ss_pred HHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHH
Confidence 444333332 211110 00011110 011245789999999999998766554
No 342
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.83 E-value=1.9e-08 Score=75.33 Aligned_cols=84 Identities=24% Similarity=0.356 Sum_probs=62.4
Q ss_pred CCCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCC--CCCcceeEEEeCC-----------------EEEEEEEcCCh
Q 029437 15 GLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQP--TQYPTSEELSIGK-----------------IKFKAFDLGGH 74 (193)
Q Consensus 15 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~--t~~~~~~~~~~~~-----------------~~~~~~D~~G~ 74 (193)
++.-.+++++|+|.|++|||||+|+++...... +.| |++++...+.... ..++++|++|.
T Consensus 15 gR~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGL 94 (391)
T KOG1491|consen 15 GRDGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGL 94 (391)
T ss_pred cCCCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccc
Confidence 444567899999999999999999999887553 333 7777766655432 56899999985
Q ss_pred hhh-------HhhHHhhcccCCEEEEEEECC
Q 029437 75 QIA-------RRVWKDYYAKVDAVVYLVDAY 98 (193)
Q Consensus 75 ~~~-------~~~~~~~~~~~d~vl~v~d~~ 98 (193)
-.. ..-+...++.+|+++.|+++.
T Consensus 95 vkGAs~G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 95 VKGASAGEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred ccCcccCcCchHHHHHhhhhccceeEEEEec
Confidence 432 334455568899999999985
No 343
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=2.7e-08 Score=71.27 Aligned_cols=115 Identities=20% Similarity=0.288 Sum_probs=76.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc----cCCCCCcceeEEEeCCEEEEEEEcCChhhhHh---hHHhhcccCCEEEE
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDERLVQ----HQPTQYPTSEELSIGKIKFKAFDLGGHQIARR---VWKDYYAKVDAVVY 93 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~---~~~~~~~~~d~vl~ 93 (193)
.+|+++|...|||||+.+.+.+...+. ...|..+....+...-+.+.+||.||+-.+-. -....++++.+.++
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALif 107 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALIF 107 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEEE
Confidence 579999999999999998877654322 12244445555555568899999999865432 12456788999999
Q ss_pred EEECCChhhHHHHHHHHHHHHcC-CCCCCCcEEEEEeCCCCCCC
Q 029437 94 LVDAYDKERFAESKKELDALLSD-EALANVPFLVLGNKIDIPYA 136 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~pviiv~nK~D~~~~ 136 (193)
|+|+.+. -.+.+..+...+-.. .-.+++.+=+.+.|.|....
T Consensus 108 vIDaQdd-y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsd 150 (347)
T KOG3887|consen 108 VIDAQDD-YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSD 150 (347)
T ss_pred EEechHH-HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCch
Confidence 9999654 122333333322221 13368888899999998743
No 344
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.81 E-value=1.6e-08 Score=68.29 Aligned_cols=52 Identities=21% Similarity=0.274 Sum_probs=37.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccccCCCCC--cceeEEEeCCEEEEEEEcCCh
Q 029437 22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQY--PTSEELSIGKIKFKAFDLGGH 74 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~--~~~~~~~~~~~~~~~~D~~G~ 74 (193)
+++++|.+|+|||||+|++.+..........+ .....+..++ .+.+|||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP-TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC-CEEEEECCCc
Confidence 89999999999999999999887654322222 2233344433 6799999995
No 345
>PRK00098 GTPase RsgA; Reviewed
Probab=98.79 E-value=1.3e-08 Score=77.18 Aligned_cols=86 Identities=19% Similarity=0.105 Sum_probs=57.9
Q ss_pred hcccCCEEEEEEECCChhhHHH-HHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCC-CHHHHHHhhCCCccccCCCccccC
Q 029437 84 YYAKVDAVVYLVDAYDKERFAE-SKKELDALLSDEALANVPFLVLGNKIDIPYAA-SEEELRYHLGLSNFTTGKGKVNLA 161 (193)
Q Consensus 84 ~~~~~d~vl~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 161 (193)
...++|.+++|+|+.++..... +..++..... .++|+++|+||+|+.... ...+....+. .
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~----~~ip~iIVlNK~DL~~~~~~~~~~~~~~~--~----------- 139 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA----NGIKPIIVLNKIDLLDDLEEARELLALYR--A----------- 139 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEEhHHcCCCHHHHHHHHHHHH--H-----------
Confidence 3578999999999988754433 3445444322 478999999999996221 1111112111 0
Q ss_pred CCCCcceEEEEeeeecCCChhhHHHhhhh
Q 029437 162 DSNVRPLEVFMCSIVRKMGYGDGFKWLSQ 190 (193)
Q Consensus 162 ~~~~~~~~~~~~Sa~~g~gv~el~~~i~~ 190 (193)
...+++++||++|.|++++++.|..
T Consensus 140 ----~g~~v~~vSA~~g~gi~~L~~~l~g 164 (298)
T PRK00098 140 ----IGYDVLELSAKEGEGLDELKPLLAG 164 (298)
T ss_pred ----CCCeEEEEeCCCCccHHHHHhhccC
Confidence 1246899999999999999998754
No 346
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.79 E-value=2.8e-08 Score=74.92 Aligned_cols=56 Identities=20% Similarity=0.383 Sum_probs=41.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccee--EEEeCCEEEEEEEcCCh
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSE--ELSIGKIKFKAFDLGGH 74 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~D~~G~ 74 (193)
...++++++|.||+|||||+|++.+.......+..+.+.. .+..+ ..+.++||||.
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~-~~~~l~DtPGi 176 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKLG-KGLELLDTPGI 176 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEeC-CcEEEEECCCc
Confidence 4568999999999999999999998876554444443322 22222 35889999995
No 347
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.78 E-value=4.6e-08 Score=67.14 Aligned_cols=57 Identities=26% Similarity=0.292 Sum_probs=40.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEE-eCCEEEEEEEcCCh
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELS-IGKIKFKAFDLGGH 74 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~-~~~~~~~~~D~~G~ 74 (193)
....+++++|.+|+||||+++++.+.......++.+.+..... ..+..+.+|||||.
T Consensus 99 ~~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~DtpGi 156 (156)
T cd01859 99 GKEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKITSKIYLLDTPGV 156 (156)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEcCCCEEEEECcCC
Confidence 3557899999999999999999997765555555554432111 12347899999993
No 348
>PRK12288 GTPase RsgA; Reviewed
Probab=98.78 E-value=3.1e-08 Score=76.28 Aligned_cols=89 Identities=18% Similarity=0.110 Sum_probs=63.1
Q ss_pred cccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCC
Q 029437 85 YAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSN 164 (193)
Q Consensus 85 ~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (193)
..++|.+++|++.....++..+..|+.... ..++|+++|+||+|+.+............... +
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~----~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~-----------~-- 180 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACE----TLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYR-----------N-- 180 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHH----hcCCCEEEEEECccCCCcHHHHHHHHHHHHHH-----------h--
Confidence 457999999999987778888888876442 24789999999999975432222221111100 0
Q ss_pred CcceEEEEeeeecCCChhhHHHhhhhh
Q 029437 165 VRPLEVFMCSIVRKMGYGDGFKWLSQY 191 (193)
Q Consensus 165 ~~~~~~~~~Sa~~g~gv~el~~~i~~~ 191 (193)
...+++++||+++.|+++++++|...
T Consensus 181 -~g~~v~~vSA~tg~GideL~~~L~~k 206 (347)
T PRK12288 181 -IGYRVLMVSSHTGEGLEELEAALTGR 206 (347)
T ss_pred -CCCeEEEEeCCCCcCHHHHHHHHhhC
Confidence 12578999999999999999998754
No 349
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.74 E-value=3.8e-08 Score=73.84 Aligned_cols=56 Identities=18% Similarity=0.327 Sum_probs=39.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcc--eeEEEeCCEEEEEEEcCCh
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPT--SEELSIGKIKFKAFDLGGH 74 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~D~~G~ 74 (193)
...++++++|.||+|||||+|++.+.......+..+.+ ...+... ..+.++||||.
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~-~~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKLS-DGLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEeC-CCEEEEECCCc
Confidence 45689999999999999999999987654433333222 2233333 25789999997
No 350
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.74 E-value=3.1e-08 Score=79.17 Aligned_cols=115 Identities=21% Similarity=0.121 Sum_probs=81.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcc---------------------ccCCCCCcceeEEEeCCEEEEEEEcCChhhh
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDERLV---------------------QHQPTQYPTSEELSIGKIKFKAFDLGGHQIA 77 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~---------------------~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~ 77 (193)
+--+|.+.-.-.+||||+-++++...-. +...|.......+.|.+.+++++|||||..|
T Consensus 38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDF 117 (721)
T KOG0465|consen 38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDF 117 (721)
T ss_pred hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeE
Confidence 3347888889999999999987532211 1223444555667788999999999999988
Q ss_pred HhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC
Q 029437 78 RRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAAS 138 (193)
Q Consensus 78 ~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~ 138 (193)
.-.....++-.|+.++|+++...-. .+....|++.-. -++|.|..+||+|...+..
T Consensus 118 T~EVeRALrVlDGaVlvl~aV~GVq-sQt~tV~rQ~~r----y~vP~i~FiNKmDRmGa~~ 173 (721)
T KOG0465|consen 118 TFEVERALRVLDGAVLVLDAVAGVE-SQTETVWRQMKR----YNVPRICFINKMDRMGASP 173 (721)
T ss_pred EEEehhhhhhccCeEEEEEccccee-hhhHHHHHHHHh----cCCCeEEEEehhhhcCCCh
Confidence 7777777788898888888866532 123334444422 3899999999999875543
No 351
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.74 E-value=1.1e-07 Score=68.24 Aligned_cols=119 Identities=16% Similarity=0.201 Sum_probs=69.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc--cC-----C---CCCc--ceeEEEeCC--EEEEEEEcCCh--------
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ--HQ-----P---TQYP--TSEELSIGK--IKFKAFDLGGH-------- 74 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~--~~-----~---t~~~--~~~~~~~~~--~~~~~~D~~G~-------- 74 (193)
+--+|+|+|+|.+|.|||||+|.++...... .. | |... ..+.++-++ .+++++||||-
T Consensus 43 ~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~n 122 (336)
T KOG1547|consen 43 TGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDN 122 (336)
T ss_pred ccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccc
Confidence 3467999999999999999999987554322 11 1 1111 223334444 57899999992
Q ss_pred ----------hhhHhhH--------Hhhcc--cCCEEEEEEECCChhhHHHHH-HHHHHHHcCCCCCCCcEEEEEeCCCC
Q 029437 75 ----------QIARRVW--------KDYYA--KVDAVVYLVDAYDKERFAESK-KELDALLSDEALANVPFLVLGNKIDI 133 (193)
Q Consensus 75 ----------~~~~~~~--------~~~~~--~~d~vl~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~pviiv~nK~D~ 133 (193)
+.+...+ +..++ ++|+++|.+..+.- ++..++ +.++.+. .-+.++-|+-|+|.
T Consensus 123 cWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGh-sLrplDieflkrLt-----~vvNvvPVIakaDt 196 (336)
T KOG1547|consen 123 CWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGH-SLRPLDIEFLKRLT-----EVVNVVPVIAKADT 196 (336)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCC-ccCcccHHHHHHHh-----hhheeeeeEeeccc
Confidence 1122211 11222 67899998887543 233222 3333332 14567888999998
Q ss_pred CCCCCHHH
Q 029437 134 PYAASEEE 141 (193)
Q Consensus 134 ~~~~~~~~ 141 (193)
..-.+..+
T Consensus 197 lTleEr~~ 204 (336)
T KOG1547|consen 197 LTLEERSA 204 (336)
T ss_pred ccHHHHHH
Confidence 74333333
No 352
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.72 E-value=3.7e-08 Score=69.85 Aligned_cols=54 Identities=26% Similarity=0.402 Sum_probs=35.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc--------cCCCCCcceeE--EEeCCEEEEEEEcCC
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQ--------HQPTQYPTSEE--LSIGKIKFKAFDLGG 73 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~--------~~~t~~~~~~~--~~~~~~~~~~~D~~G 73 (193)
...+++++|.+|+|||||+|++.+..... ..+..+.+... +..+. .+.++||||
T Consensus 126 ~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~-~~~~~DtPG 189 (190)
T cd01855 126 KGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN-GKKLYDTPG 189 (190)
T ss_pred cCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC-CCEEEeCcC
Confidence 34689999999999999999998754321 11112222222 22222 579999999
No 353
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.71 E-value=4.2e-08 Score=67.30 Aligned_cols=81 Identities=17% Similarity=0.148 Sum_probs=52.4
Q ss_pred CEEEEEEECCChhhHHHHHHHHH-HHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcc
Q 029437 89 DAVVYLVDAYDKERFAESKKELD-ALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRP 167 (193)
Q Consensus 89 d~vl~v~d~~~~~~~~~~~~~~~-~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (193)
|.+++|+|+.++.+... .++. ..+. ..++|+++|+||+|+.+.....+....+... ..
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~~~~~---~~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~----------------~~ 59 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIERVLIK---EKGKKLILVLNKADLVPKEVLRKWLAYLRHS----------------YP 59 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHHHHHh---cCCCCEEEEEechhcCCHHHHHHHHHHHHhh----------------CC
Confidence 78999999988754321 2222 2222 2479999999999996432111222122111 12
Q ss_pred eEEEEeeeecCCChhhHHHhhhh
Q 029437 168 LEVFMCSIVRKMGYGDGFKWLSQ 190 (193)
Q Consensus 168 ~~~~~~Sa~~g~gv~el~~~i~~ 190 (193)
..++.+||++|.|++++.+.|.+
T Consensus 60 ~~ii~vSa~~~~gi~~L~~~i~~ 82 (155)
T cd01849 60 TIPFKISATNGQGIEKKESAFTK 82 (155)
T ss_pred ceEEEEeccCCcChhhHHHHHHH
Confidence 46789999999999999998865
No 354
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.71 E-value=1.1e-07 Score=73.29 Aligned_cols=78 Identities=18% Similarity=0.159 Sum_probs=58.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCc-cc-c--CCCCCcceeEEEeCC-----------------EEEEEEEcCChhhh--
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDERL-VQ-H--QPTQYPTSEELSIGK-----------------IKFKAFDLGGHQIA-- 77 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~~-~~-~--~~t~~~~~~~~~~~~-----------------~~~~~~D~~G~~~~-- 77 (193)
++++|+|.|++|||||++++++... .. . ..|..++...+...+ ..+.+.|.||....
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 6899999999999999999998875 22 2 235677776666543 46899999995432
Q ss_pred -----HhhHHhhcccCCEEEEEEECC
Q 029437 78 -----RRVWKDYYAKVDAVVYLVDAY 98 (193)
Q Consensus 78 -----~~~~~~~~~~~d~vl~v~d~~ 98 (193)
...+...++.+|++++|+++.
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 224445668999999999984
No 355
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=98.70 E-value=1.1e-08 Score=78.13 Aligned_cols=162 Identities=17% Similarity=0.088 Sum_probs=100.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCC----------------------------------ccccCCCCCcceeEEEeC
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDER----------------------------------LVQHQPTQYPTSEELSIG 62 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~----------------------------------~~~~~~t~~~~~~~~~~~ 62 (193)
.+.++++.++|...+||||+-.++.... -+....|+......++..
T Consensus 76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte 155 (501)
T KOG0459|consen 76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE 155 (501)
T ss_pred CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec
Confidence 3678999999999999999988763111 011122444455666777
Q ss_pred CEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChh---hHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCH
Q 029437 63 KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKE---RFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASE 139 (193)
Q Consensus 63 ~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~ 139 (193)
..++++.|.||+..|...+-....++|.-++|+++.-.+ .|+.=.+.-...+......-...|+++||+|-+.....
T Consensus 156 ~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnWs 235 (501)
T KOG0459|consen 156 NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWS 235 (501)
T ss_pred ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCcc
Confidence 789999999999999877777778899999999984321 12111111111111111234567999999998743222
Q ss_pred ----HHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHH
Q 029437 140 ----EELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGF 185 (193)
Q Consensus 140 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~ 185 (193)
+|..+.+.... +. ... .......+++||..+|.++.+..
T Consensus 236 ~eRy~E~~~k~~~fL-r~--~g~----n~~~d~~f~p~sg~tG~~~k~~~ 278 (501)
T KOG0459|consen 236 NERYEECKEKLQPFL-RK--LGF----NPKPDKHFVPVSGLTGANVKDRT 278 (501)
T ss_pred hhhHHHHHHHHHHHH-HH--hcc----cCCCCceeeecccccccchhhcc
Confidence 22333332221 10 000 01144689999999999987754
No 356
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.70 E-value=4.3e-08 Score=68.34 Aligned_cols=97 Identities=21% Similarity=0.161 Sum_probs=61.1
Q ss_pred cCChh-hhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCC
Q 029437 71 LGGHQ-IARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLS 149 (193)
Q Consensus 71 ~~G~~-~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~ 149 (193)
.||+. +........+..+|.+++|+|+.++..... ..+...+ .+.|+++++||+|+.+.....+..+.+...
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~--~~i~~~~-----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~ 74 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRN--PLLEKIL-----GNKPRIIVLNKADLADPKKTKKWLKYFESK 74 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCC--hhhHhHh-----cCCCEEEEEehhhcCChHHHHHHHHHHHhc
Confidence 35543 334455667789999999999987643211 1111111 357999999999996321111111111111
Q ss_pred ccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhh
Q 029437 150 NFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQY 191 (193)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~ 191 (193)
...++.+||+++.|++++.+.|...
T Consensus 75 -----------------~~~vi~iSa~~~~gi~~L~~~l~~~ 99 (171)
T cd01856 75 -----------------GEKVLFVNAKSGKGVKKLLKAAKKL 99 (171)
T ss_pred -----------------CCeEEEEECCCcccHHHHHHHHHHH
Confidence 1357899999999999999988764
No 357
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.69 E-value=3.1e-09 Score=81.58 Aligned_cols=124 Identities=18% Similarity=0.090 Sum_probs=89.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC-----------------c----cccCCCCCcceeEEEeCCEEEEEEEcCChhhhHh
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDER-----------------L----VQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARR 79 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~-----------------~----~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~ 79 (193)
-+|+++..-.+||||...++.... | .....|+......++|++++++++||||+..|+-
T Consensus 38 rnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~l 117 (753)
T KOG0464|consen 38 RNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFRL 117 (753)
T ss_pred hcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEEE
Confidence 378999999999999999874221 0 0123355566778899999999999999999998
Q ss_pred hHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC---HHHHHHhhCCC
Q 029437 80 VWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAAS---EEELRYHLGLS 149 (193)
Q Consensus 80 ~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~---~~~~~~~~~~~ 149 (193)
....+++-.|+++.|+|++..-..+.+ ..|++. ...++|-++.+||+|...+.. .+.+.+.++..
T Consensus 118 everclrvldgavav~dasagve~qtl-tvwrqa----dk~~ip~~~finkmdk~~anfe~avdsi~ekl~ak 185 (753)
T KOG0464|consen 118 EVERCLRVLDGAVAVFDASAGVEAQTL-TVWRQA----DKFKIPAHCFINKMDKLAANFENAVDSIEEKLGAK 185 (753)
T ss_pred EHHHHHHHhcCeEEEEeccCCccccee-eeehhc----cccCCchhhhhhhhhhhhhhhhhHHHHHHHHhCCc
Confidence 888899999999999999765332222 223332 335899999999999975432 23355555533
No 358
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.68 E-value=4.9e-08 Score=73.23 Aligned_cols=97 Identities=22% Similarity=0.202 Sum_probs=62.5
Q ss_pred cCChhh-hHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCC
Q 029437 71 LGGHQI-ARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLS 149 (193)
Q Consensus 71 ~~G~~~-~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~ 149 (193)
.|||.. ........+..+|++++|+|+.++.+... ..+...+ .+.|+++|+||+|+.+.....+..+.+...
T Consensus 4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l-----~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~ 76 (276)
T TIGR03596 4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR-----GNKPRLIVLNKADLADPAVTKQWLKYFEEK 76 (276)
T ss_pred ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH-----CCCCEEEEEEccccCCHHHHHHHHHHHHHc
Confidence 466643 34455667789999999999987643211 1222232 267999999999996321112222222110
Q ss_pred ccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhh
Q 029437 150 NFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQY 191 (193)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~ 191 (193)
...++.+||+++.|++++.+.|.+.
T Consensus 77 -----------------~~~vi~iSa~~~~gi~~L~~~i~~~ 101 (276)
T TIGR03596 77 -----------------GIKALAINAKKGKGVKKIIKAAKKL 101 (276)
T ss_pred -----------------CCeEEEEECCCcccHHHHHHHHHHH
Confidence 1357899999999999999888754
No 359
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.67 E-value=1.6e-06 Score=69.23 Aligned_cols=84 Identities=14% Similarity=0.160 Sum_probs=56.0
Q ss_pred EEEEEEEcCCh-------------hhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeC
Q 029437 64 IKFKAFDLGGH-------------QIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNK 130 (193)
Q Consensus 64 ~~~~~~D~~G~-------------~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK 130 (193)
-+..+.|+||. +....+...++.+..++|+|+--.+-+. -+...-.+.......+...|+|+||
T Consensus 412 qRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDA---ERSnVTDLVsq~DP~GrRTIfVLTK 488 (980)
T KOG0447|consen 412 QRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDA---ERSIVTDLVSQMDPHGRRTIFVLTK 488 (980)
T ss_pred ceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcch---hhhhHHHHHHhcCCCCCeeEEEEee
Confidence 36789999994 3345567788899999999986432211 1112222222334457788999999
Q ss_pred CCCCC--CCCHHHHHHhhCCCc
Q 029437 131 IDIPY--AASEEELRYHLGLSN 150 (193)
Q Consensus 131 ~D~~~--~~~~~~~~~~~~~~~ 150 (193)
+|+.. -.+++.+.+.+.-..
T Consensus 489 VDlAEknlA~PdRI~kIleGKL 510 (980)
T KOG0447|consen 489 VDLAEKNVASPSRIQQIIEGKL 510 (980)
T ss_pred cchhhhccCCHHHHHHHHhcCc
Confidence 99983 457888888887555
No 360
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.66 E-value=1.5e-07 Score=70.73 Aligned_cols=119 Identities=17% Similarity=0.142 Sum_probs=77.1
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhcC-------Cc---cc-----cCCCCC--cceeEEEeC--CEEEEEEEcCChhh
Q 029437 16 LWQKEAKILFLGLDNAGKTTLLHMLKDE-------RL---VQ-----HQPTQY--PTSEELSIG--KIKFKAFDLGGHQI 76 (193)
Q Consensus 16 ~~~~~~~i~v~G~~~~GKssl~~~l~~~-------~~---~~-----~~~t~~--~~~~~~~~~--~~~~~~~D~~G~~~ 76 (193)
+.+.+++|+-+|+..-|||||..+++.- ++ .+ .....+ ++...++|. ...+.-.|+||+-.
T Consensus 50 R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHAD 129 (449)
T KOG0460|consen 50 RDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHAD 129 (449)
T ss_pred cCCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHH
Confidence 4578899999999999999999887421 11 11 011222 344455554 45677889999998
Q ss_pred hHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC
Q 029437 77 ARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAAS 138 (193)
Q Consensus 77 ~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~ 138 (193)
|-..+-....+-|+.|+|+.++|..-- +.++.+.-. .+. .-..+++.+||.|+.++.+
T Consensus 130 YIKNMItGaaqMDGaILVVaatDG~MP-QTrEHlLLA-rQV--GV~~ivvfiNKvD~V~d~e 187 (449)
T KOG0460|consen 130 YIKNMITGAAQMDGAILVVAATDGPMP-QTREHLLLA-RQV--GVKHIVVFINKVDLVDDPE 187 (449)
T ss_pred HHHHhhcCccccCceEEEEEcCCCCCc-chHHHHHHH-HHc--CCceEEEEEecccccCCHH
Confidence 876655556778999999999986422 222211111 111 2346789999999985443
No 361
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.66 E-value=4.6e-08 Score=75.99 Aligned_cols=101 Identities=18% Similarity=0.290 Sum_probs=64.9
Q ss_pred hhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC-CCHHHHHHhhCCCccc
Q 029437 74 HQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA-ASEEELRYHLGLSNFT 152 (193)
Q Consensus 74 ~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~-~~~~~~~~~~~~~~~~ 152 (193)
.+.+..+...+...++++++|+|+.+... .....+.... .+.|+++|+||+|+.+. ...+++.+...... .
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~--s~~~~l~~~~-----~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~-k 121 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG--SLIPELKRFV-----GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRA-K 121 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCC--CccHHHHHHh-----CCCCEEEEEEchhhCCCCCCHHHHHHHHHHHH-H
Confidence 55778888888889999999999977642 1222222222 26799999999999743 23333322211000 0
Q ss_pred cCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhh
Q 029437 153 TGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQY 191 (193)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~ 191 (193)
. ......+++.+||++|.|++++++.|.+.
T Consensus 122 ~---------~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 122 E---------LGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred H---------cCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 0 00011358899999999999999998653
No 362
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.66 E-value=7.5e-08 Score=67.16 Aligned_cols=56 Identities=18% Similarity=0.290 Sum_probs=38.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCc--ceeEEEeCCEEEEEEEcCCh
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYP--TSEELSIGKIKFKAFDLGGH 74 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~--~~~~~~~~~~~~~~~D~~G~ 74 (193)
...++++++|.+|+|||||++++.+..+....+..+. ....+..+ ..+.++||||.
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~-~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS-PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec-CCEEEEECCCC
Confidence 4557999999999999999999998776443322221 12222332 46789999994
No 363
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.66 E-value=7.7e-08 Score=69.68 Aligned_cols=84 Identities=18% Similarity=0.184 Sum_probs=55.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCc--cccCC-CCCcceeEEEeCCEEEEEEEcCChhhhH-------hhHHhhcccCCE
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDERL--VQHQP-TQYPTSEELSIGKIKFKAFDLGGHQIAR-------RVWKDYYAKVDA 90 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~~--~~~~~-t~~~~~~~~~~~~~~~~~~D~~G~~~~~-------~~~~~~~~~~d~ 90 (193)
-++.++|.|.+||||++..+.+..- +...- |.-...+...+.+-++.+.|+||.-... .+.-...+-|..
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavartcnl 139 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTCNL 139 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeecccE
Confidence 3899999999999999999886541 11221 2222344556778899999999953321 111223457899
Q ss_pred EEEEEECCChhhHH
Q 029437 91 VVYLVDAYDKERFA 104 (193)
Q Consensus 91 vl~v~d~~~~~~~~ 104 (193)
+++|.|+..|-+..
T Consensus 140 i~~vld~~kp~~hk 153 (358)
T KOG1487|consen 140 IFIVLDVLKPLSHK 153 (358)
T ss_pred EEEEeeccCcccHH
Confidence 99999998764433
No 364
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=4.5e-07 Score=72.49 Aligned_cols=143 Identities=17% Similarity=0.145 Sum_probs=83.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEEC
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDA 97 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~ 97 (193)
...+-++|+||||+|||||++.+..+--.+....+.--...+.....++++..+|.. ..++ ....+-+|.||+++|.
T Consensus 67 PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvvsgK~RRiTflEcp~D--l~~m-iDvaKIaDLVlLlIdg 143 (1077)
T COG5192 67 PPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVSGKTRRITFLECPSD--LHQM-IDVAKIADLVLLLIDG 143 (1077)
T ss_pred CCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEEeecceeEEEEEeChHH--HHHH-HhHHHhhheeEEEecc
Confidence 356778899999999999999987643211111111112234456678999999833 3333 3344668999999999
Q ss_pred CChhhHHHHHHHHHHHHcCCCCCCCc-EEEEEeCCCCCCC-CCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeee
Q 029437 98 YDKERFAESKKELDALLSDEALANVP-FLVLGNKIDIPYA-ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSI 175 (193)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 175 (193)
+-.-.. +..+++.-+. . .+.| ++-|+|..|+... .......+.+.-.+++. .....++|..|.
T Consensus 144 nfGfEM-ETmEFLnil~-~---HGmPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtE----------iyqGaKlFylsg 208 (1077)
T COG5192 144 NFGFEM-ETMEFLNILI-S---HGMPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTE----------IYQGAKLFYLSG 208 (1077)
T ss_pred ccCcee-hHHHHHHHHh-h---cCCCceEEEEeecccccChHHHHHHHHHHhhhHHHH----------HcCCceEEEecc
Confidence 765222 2223333332 2 2444 5689999999843 33344555444333211 113456777776
Q ss_pred ecC
Q 029437 176 VRK 178 (193)
Q Consensus 176 ~~g 178 (193)
..+
T Consensus 209 V~n 211 (1077)
T COG5192 209 VEN 211 (1077)
T ss_pred ccc
Confidence 543
No 365
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.64 E-value=2.1e-07 Score=82.26 Aligned_cols=112 Identities=20% Similarity=0.209 Sum_probs=67.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcccc-----CC--CCCcce-eEEEeCCEEEEEEEcCChh--------hhHhhHHhh
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDERLVQH-----QP--TQYPTS-EELSIGKIKFKAFDLGGHQ--------IARRVWKDY 84 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~~~~~-----~~--t~~~~~-~~~~~~~~~~~~~D~~G~~--------~~~~~~~~~ 84 (193)
.=.+|+|++|+||||++..- +.+++-. .. ..+.+. ....+.+ .-.++||+|.. .....+..+
T Consensus 112 PWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~-~avliDtaG~y~~~~~~~~~~~~~W~~f 189 (1169)
T TIGR03348 112 PWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTD-EAVLIDTAGRYTTQDSDPEEDAAAWLGF 189 (1169)
T ss_pred CCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecC-CEEEEcCCCccccCCCcccccHHHHHHH
Confidence 34789999999999999986 3344321 11 112222 1222333 55699999922 112223222
Q ss_pred c---------ccCCEEEEEEECCC-----hhh----HHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC
Q 029437 85 Y---------AKVDAVVYLVDAYD-----KER----FAESKKELDALLSDEALANVPFLVLGNKIDIPY 135 (193)
Q Consensus 85 ~---------~~~d~vl~v~d~~~-----~~~----~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~ 135 (193)
+ +..++||+++|+.+ ++. ...++..+.++....+ .+.||.+++||+|+.+
T Consensus 190 L~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg-~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 190 LGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLG-ARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhC-CCCCEEEEEecchhhc
Confidence 2 46899999999854 211 1344444555544333 4899999999999884
No 366
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.62 E-value=1.1e-07 Score=72.68 Aligned_cols=57 Identities=19% Similarity=0.238 Sum_probs=43.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeC-CEEEEEEEcCCh
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIG-KIKFKAFDLGGH 74 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~D~~G~ 74 (193)
....+++|+|-||+||||++|+|.+.......+.++.+.....+. ...+.++||||.
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~~~i~LlDtPGi 187 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLDDGIYLLDTPGI 187 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcCCCeEEecCCCc
Confidence 456899999999999999999999998776665555544333321 234899999994
No 367
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.61 E-value=1.6e-06 Score=58.63 Aligned_cols=109 Identities=18% Similarity=0.256 Sum_probs=59.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeC--CEEEEEEEcC-Ch---------------------
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIG--KIKFKAFDLG-GH--------------------- 74 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~D~~-G~--------------------- 74 (193)
..++|+|.|+||+||||++.++...--.....--+.....++-+ .+-|.+.|+. |.
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~v 83 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVNV 83 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEeeH
Confidence 45799999999999999998876322111111112223333322 2446666665 21
Q ss_pred hhh----HhhHHhhcccCCEEEEEEECCChhh--HHHHHHHHHHHHcCCCCCCCcEEEEEeCCCC
Q 029437 75 QIA----RRVWKDYYAKVDAVVYLVDAYDKER--FAESKKELDALLSDEALANVPFLVLGNKIDI 133 (193)
Q Consensus 75 ~~~----~~~~~~~~~~~d~vl~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~ 133 (193)
+.+ .......+..+|++ ++|---+-. -....+.+.+++. .+.|+|..+.+.+.
T Consensus 84 ~~le~i~~~al~rA~~~aDvI--IIDEIGpMElks~~f~~~ve~vl~----~~kpliatlHrrsr 142 (179)
T COG1618 84 EGLEEIAIPALRRALEEADVI--IIDEIGPMELKSKKFREAVEEVLK----SGKPLIATLHRRSR 142 (179)
T ss_pred HHHHHHhHHHHHHHhhcCCEE--EEecccchhhccHHHHHHHHHHhc----CCCcEEEEEecccC
Confidence 111 12223334456655 456543311 1345555556654 48899999998776
No 368
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.61 E-value=2.8e-07 Score=63.38 Aligned_cols=22 Identities=41% Similarity=0.525 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 029437 22 KILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~~ 43 (193)
-++++|+.|+|||||++.+...
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 3689999999999999988754
No 369
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.60 E-value=1.1e-07 Score=64.12 Aligned_cols=51 Identities=24% Similarity=0.251 Sum_probs=34.8
Q ss_pred HhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC
Q 029437 82 KDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY 135 (193)
Q Consensus 82 ~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~ 135 (193)
...+..+|++++|+|+.++.+.. ...+..++.... .++|+++++||+|+.+
T Consensus 6 ~~~i~~aD~vl~ViD~~~p~~~~--~~~l~~~l~~~~-~~k~~iivlNK~DL~~ 56 (141)
T cd01857 6 WRVVERSDIVVQIVDARNPLLFR--PPDLERYVKEVD-PRKKNILLLNKADLLT 56 (141)
T ss_pred HHHHhhCCEEEEEEEccCCcccC--CHHHHHHHHhcc-CCCcEEEEEechhcCC
Confidence 34568899999999998875422 122333332222 5789999999999964
No 370
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.57 E-value=3.1e-08 Score=73.32 Aligned_cols=161 Identities=16% Similarity=0.118 Sum_probs=94.8
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhcCCccccC------CCC--------------------C---------cceeEEE
Q 029437 16 LWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQ------PTQ--------------------Y---------PTSEELS 60 (193)
Q Consensus 16 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~------~t~--------------------~---------~~~~~~~ 60 (193)
.++..++|+-+|+.--||||+.+++.+....... .|+ . ......+
T Consensus 34 sRQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~ 113 (466)
T KOG0466|consen 34 SRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCD 113 (466)
T ss_pred hheeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcc
Confidence 3567899999999999999999998654321100 000 0 0000000
Q ss_pred eCC--------EEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHH--HHHcCCCCCCCcEEEEEeC
Q 029437 61 IGK--------IKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELD--ALLSDEALANVPFLVLGNK 130 (193)
Q Consensus 61 ~~~--------~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~--~~~~~~~~~~~pviiv~nK 130 (193)
..+ ..+.+.|.||++-.-..+.....-.|+.++++..+.+.---+..+.+. +++ .-+.++++-||
T Consensus 114 ~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM-----~LkhiiilQNK 188 (466)
T KOG0466|consen 114 RPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIM-----KLKHIIILQNK 188 (466)
T ss_pred cCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHh-----hhceEEEEech
Confidence 000 357899999998765544333334577777776654211111112222 222 23567999999
Q ss_pred CCCCCCCCHHH-HHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 131 IDIPYAASEEE-LRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 131 ~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
+|+.......+ ..+...+.. .......+++++||.-++|++-+.++|++++
T Consensus 189 iDli~e~~A~eq~e~I~kFi~-----------~t~ae~aPiiPisAQlkyNId~v~eyivkkI 240 (466)
T KOG0466|consen 189 IDLIKESQALEQHEQIQKFIQ-----------GTVAEGAPIIPISAQLKYNIDVVCEYIVKKI 240 (466)
T ss_pred hhhhhHHHHHHHHHHHHHHHh-----------ccccCCCceeeehhhhccChHHHHHHHHhcC
Confidence 99985433322 222221111 1112456899999999999999999999876
No 371
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.56 E-value=2.2e-07 Score=63.74 Aligned_cols=54 Identities=20% Similarity=0.322 Sum_probs=37.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcccc----CCCCCcceeEEEeCCEEEEEEEcCCh
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQH----QPTQYPTSEELSIGKIKFKAFDLGGH 74 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~D~~G~ 74 (193)
....+++++|.||+||||++|++.+...... ..|..... ...+ ..+.++||||.
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~--~~~~-~~~~liDtPG~ 155 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQE--VKLD-NKIKLLDTPGI 155 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEE--EEec-CCEEEEECCCC
Confidence 4568899999999999999999998663221 12333322 2232 46899999993
No 372
>PRK14974 cell division protein FtsY; Provisional
Probab=98.56 E-value=1.1e-06 Score=67.37 Aligned_cols=66 Identities=18% Similarity=0.118 Sum_probs=38.1
Q ss_pred CEEEEEEEcCChhhhH----hhHHhh--cccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC
Q 029437 63 KIKFKAFDLGGHQIAR----RVWKDY--YAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY 135 (193)
Q Consensus 63 ~~~~~~~D~~G~~~~~----~~~~~~--~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~ 135 (193)
+..+.++||+|..... ..+... ....|.+++|+|+..... ..+....+... --+--+++||.|...
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d---~~~~a~~f~~~----~~~~giIlTKlD~~~ 293 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGND---AVEQAREFNEA----VGIDGVILTKVDADA 293 (336)
T ss_pred CCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchh---HHHHHHHHHhc----CCCCEEEEeeecCCC
Confidence 4579999999964321 111222 135789999999965432 22222222211 112478999999974
No 373
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.53 E-value=1.6e-07 Score=70.85 Aligned_cols=97 Identities=21% Similarity=0.215 Sum_probs=62.4
Q ss_pred cCChhh-hHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCC
Q 029437 71 LGGHQI-ARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLS 149 (193)
Q Consensus 71 ~~G~~~-~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~ 149 (193)
.|||.. ........+..+|++++|+|+.++.+... ..+...+ .+.|+++|+||+|+.+.....+..+.+..
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~-----~~kp~iiVlNK~DL~~~~~~~~~~~~~~~- 78 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKII-----GNKPRLLILNKSDLADPEVTKKWIEYFEE- 78 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh-----CCCCEEEEEEchhcCCHHHHHHHHHHHHH-
Confidence 567643 33455667789999999999987643211 2223332 26899999999999632111222222210
Q ss_pred ccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhh
Q 029437 150 NFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQY 191 (193)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~ 191 (193)
....++.+||+++.|++++.+.|.+.
T Consensus 79 ----------------~~~~vi~vSa~~~~gi~~L~~~l~~~ 104 (287)
T PRK09563 79 ----------------QGIKALAINAKKGQGVKKILKAAKKL 104 (287)
T ss_pred ----------------cCCeEEEEECCCcccHHHHHHHHHHH
Confidence 01357889999999999999887654
No 374
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.53 E-value=5.6e-06 Score=60.23 Aligned_cols=82 Identities=16% Similarity=0.021 Sum_probs=53.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcC--Ccccc----CCCCCcceeEEEe---CCEEEEEEEcCChhhhH------hhHHh
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDE--RLVQH----QPTQYPTSEELSI---GKIKFKAFDLGGHQIAR------RVWKD 83 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~--~~~~~----~~t~~~~~~~~~~---~~~~~~~~D~~G~~~~~------~~~~~ 83 (193)
+-..|.|+|++++|||+|+|++.+. .|... ..|.+........ .+..+.++||+|..... .....
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~ 85 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLF 85 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHH
Confidence 4457899999999999999999988 55422 2244443333333 35789999999964321 11122
Q ss_pred hccc--CCEEEEEEECCCh
Q 029437 84 YYAK--VDAVVYLVDAYDK 100 (193)
Q Consensus 84 ~~~~--~d~vl~v~d~~~~ 100 (193)
.+.. ++.+||..+....
T Consensus 86 ~l~~llss~~i~n~~~~~~ 104 (224)
T cd01851 86 ALATLLSSVLIYNSWETIL 104 (224)
T ss_pred HHHHHHhCEEEEeccCccc
Confidence 2223 7888888887543
No 375
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.50 E-value=2e-07 Score=63.72 Aligned_cols=57 Identities=18% Similarity=0.170 Sum_probs=33.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccccCC-----CCCc----ceeEEEeCCEEEEEEEcCChhhhH
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDERLVQHQP-----TQYP----TSEELSIGKIKFKAFDLGGHQIAR 78 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~-----t~~~----~~~~~~~~~~~~~~~D~~G~~~~~ 78 (193)
-.++++|++|||||||+|.|.......... ..+. ...-+..+. ...++||||...+.
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~-g~~iIDTPGf~~~~ 101 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPD-GGYIIDTPGFRSFG 101 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETT-SEEEECSHHHHT--
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCC-CcEEEECCCCCccc
Confidence 479999999999999999999875322111 0111 122223322 34789999976543
No 376
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.47 E-value=2.3e-06 Score=65.31 Aligned_cols=23 Identities=39% Similarity=0.534 Sum_probs=19.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLK 41 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~ 41 (193)
....|+++|++|+||||++..+.
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA 135 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLA 135 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHH
Confidence 34679999999999999998874
No 377
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.47 E-value=3e-06 Score=63.39 Aligned_cols=67 Identities=15% Similarity=0.087 Sum_probs=39.0
Q ss_pred CCEEEEEEEcCChhhhHhh----HHh---hc-----ccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEe
Q 029437 62 GKIKFKAFDLGGHQIARRV----WKD---YY-----AKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGN 129 (193)
Q Consensus 62 ~~~~~~~~D~~G~~~~~~~----~~~---~~-----~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~n 129 (193)
.+..+.++||||....... +.. .. ..+|.+++|+|++... +.. .....+.+.. -+.-+++|
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~-~~~~~f~~~~----~~~g~IlT 225 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NAL-EQAKVFNEAV----GLTGIILT 225 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHH-HHHHHHHhhC----CCCEEEEE
Confidence 3478999999996432211 111 11 2379999999997532 222 2223332211 13479999
Q ss_pred CCCCCC
Q 029437 130 KIDIPY 135 (193)
Q Consensus 130 K~D~~~ 135 (193)
|.|...
T Consensus 226 KlDe~~ 231 (272)
T TIGR00064 226 KLDGTA 231 (272)
T ss_pred ccCCCC
Confidence 999873
No 378
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.45 E-value=7e-07 Score=73.30 Aligned_cols=110 Identities=19% Similarity=0.086 Sum_probs=76.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCc---------------cccCCCCCcc----eeEEEeCCEEEEEEEcCChhhhHhh
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKDERL---------------VQHQPTQYPT----SEELSIGKIKFKAFDLGGHQIARRV 80 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~~~~---------------~~~~~t~~~~----~~~~~~~~~~~~~~D~~G~~~~~~~ 80 (193)
--+|.++-+..-|||||+..+....- .....+.+++ ......+++.++++|+|||..|...
T Consensus 9 irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~se 88 (887)
T KOG0467|consen 9 IRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFSSE 88 (887)
T ss_pred eeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchhhh
Confidence 34688889999999999999864431 1122233332 2223346789999999999999988
Q ss_pred HHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCC
Q 029437 81 WKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIP 134 (193)
Q Consensus 81 ~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~ 134 (193)
......-+|+.++++|+...-.- +....+++.+. .+..+++|+||+|..
T Consensus 89 vssas~l~d~alvlvdvvegv~~-qt~~vlrq~~~----~~~~~~lvinkidrl 137 (887)
T KOG0467|consen 89 VSSASRLSDGALVLVDVVEGVCS-QTYAVLRQAWI----EGLKPILVINKIDRL 137 (887)
T ss_pred hhhhhhhcCCcEEEEeeccccch-hHHHHHHHHHH----ccCceEEEEehhhhH
Confidence 88887889999999999775332 22333443333 266679999999944
No 379
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=1e-05 Score=66.05 Aligned_cols=114 Identities=18% Similarity=0.215 Sum_probs=69.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcccc--CCCC-------------------C----------------------
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQH--QPTQ-------------------Y---------------------- 53 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~--~~t~-------------------~---------------------- 53 (193)
.+...||++.|..++||||++|++...+..+. .++. +
T Consensus 106 ~r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~ 185 (749)
T KOG0448|consen 106 ARRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKD 185 (749)
T ss_pred hhcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccc
Confidence 35667999999999999999999965543221 1100 0
Q ss_pred ---cceeEEEeCC-------EEEEEEEcCChh---hhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCC
Q 029437 54 ---PTSEELSIGK-------IKFKAFDLGGHQ---IARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALA 120 (193)
Q Consensus 54 ---~~~~~~~~~~-------~~~~~~D~~G~~---~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 120 (193)
.....+-+++ -++.++|.||.. ...+....+...+|++++|.++.+.-+..+ .+++...-. .
T Consensus 186 ~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se-k~Ff~~vs~----~ 260 (749)
T KOG0448|consen 186 LGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE-KQFFHKVSE----E 260 (749)
T ss_pred cCcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH-HHHHHHhhc----c
Confidence 0011111211 257899999954 334555666778999999999977643222 233333322 2
Q ss_pred CCcEEEEEeCCCCCC
Q 029437 121 NVPFLVLGNKIDIPY 135 (193)
Q Consensus 121 ~~pviiv~nK~D~~~ 135 (193)
+..+.++.||-|...
T Consensus 261 KpniFIlnnkwDasa 275 (749)
T KOG0448|consen 261 KPNIFILNNKWDASA 275 (749)
T ss_pred CCcEEEEechhhhhc
Confidence 445567777779864
No 380
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.39 E-value=6.1e-07 Score=69.77 Aligned_cols=56 Identities=20% Similarity=0.294 Sum_probs=35.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCc-----cccCCCCCcceeEEEeC-CEEEEEEEcCChhh
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDERL-----VQHQPTQYPTSEELSIG-KIKFKAFDLGGHQI 76 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~~-----~~~~~t~~~~~~~~~~~-~~~~~~~D~~G~~~ 76 (193)
.+++++|.+|+|||||+|++..... ....+.++.+.....+. +..+.++||||...
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~~~~l~DtPG~~~ 216 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDDGHSLYDTPGIIN 216 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCCCCEEEECCCCCC
Confidence 5899999999999999999987542 11112222222222221 12457999999653
No 381
>PRK01889 GTPase RsgA; Reviewed
Probab=98.36 E-value=2.6e-06 Score=66.17 Aligned_cols=84 Identities=18% Similarity=0.137 Sum_probs=56.7
Q ss_pred cccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCC
Q 029437 85 YAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSN 164 (193)
Q Consensus 85 ~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (193)
..++|.+++|+++..+-+...+..++..... .++|.++|+||+|+.+. .++..+.+....
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~----~~i~piIVLNK~DL~~~--~~~~~~~~~~~~-------------- 169 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWE----SGAEPVIVLTKADLCED--AEEKIAEVEALA-------------- 169 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHH----cCCCEEEEEEChhcCCC--HHHHHHHHHHhC--------------
Confidence 5789999999999644333444454444432 47888999999999753 222211111101
Q ss_pred CcceEEEEeeeecCCChhhHHHhhh
Q 029437 165 VRPLEVFMCSIVRKMGYGDGFKWLS 189 (193)
Q Consensus 165 ~~~~~~~~~Sa~~g~gv~el~~~i~ 189 (193)
...+++.+|+++|.|++++.++|.
T Consensus 170 -~g~~Vi~vSa~~g~gl~~L~~~L~ 193 (356)
T PRK01889 170 -PGVPVLAVSALDGEGLDVLAAWLS 193 (356)
T ss_pred -CCCcEEEEECCCCccHHHHHHHhh
Confidence 235789999999999999999885
No 382
>PRK12289 GTPase RsgA; Reviewed
Probab=98.34 E-value=9.5e-07 Score=68.23 Aligned_cols=54 Identities=15% Similarity=0.076 Sum_probs=33.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccccCCCCC---------cceeEEEeCCEEEEEEEcCChhh
Q 029437 22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQY---------PTSEELSIGKIKFKAFDLGGHQI 76 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~---------~~~~~~~~~~~~~~~~D~~G~~~ 76 (193)
.++|+|++|+|||||+|+|............+ ....-+...+. ..++||||...
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g-~~liDTPG~~~ 236 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNG-GLLADTPGFNQ 236 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCC-cEEEeCCCccc
Confidence 48999999999999999998765433222111 11122223221 26899999543
No 383
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.33 E-value=1.4e-06 Score=59.21 Aligned_cols=58 Identities=16% Similarity=0.176 Sum_probs=36.2
Q ss_pred CEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCC
Q 029437 63 KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKID 132 (193)
Q Consensus 63 ~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D 132 (193)
+..+.++||+|..... ...+..+|.+++|....-.+.+.-+.- ..+ ...-++++||.|
T Consensus 91 ~~D~iiIDtaG~~~~~---~~~~~~Ad~~ivv~tpe~~D~y~~~k~---~~~------~~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQSE---VDIASMADTTVVVMAPGAGDDIQAIKA---GIM------EIADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChhh---hhHHHhCCEEEEEECCCchhHHHHhhh---hHh------hhcCEEEEeCCC
Confidence 4678999998854222 236678899999988863333322211 121 222389999998
No 384
>PRK13796 GTPase YqeH; Provisional
Probab=98.31 E-value=5.3e-06 Score=64.69 Aligned_cols=99 Identities=20% Similarity=0.294 Sum_probs=58.1
Q ss_pred hhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCC-CHHHHHHhhCCCccccC
Q 029437 76 IARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAA-SEEELRYHLGLSNFTTG 154 (193)
Q Consensus 76 ~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~-~~~~~~~~~~~~~~~~~ 154 (193)
.+.......-.....|++|+|+.|... .....+..+. .+.|+++|+||+|+.+.. ..+++.+...... . .
T Consensus 58 ~~~~~l~~i~~~~~lIv~VVD~~D~~~--s~~~~L~~~~-----~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~-k-~ 128 (365)
T PRK13796 58 DFLKLLNGIGDSDALVVNVVDIFDFNG--SWIPGLHRFV-----GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEA-K-E 128 (365)
T ss_pred HHHHHHHhhcccCcEEEEEEECccCCC--chhHHHHHHh-----CCCCEEEEEEchhhCCCccCHHHHHHHHHHHH-H-h
Confidence 455554444333449999999987532 2222333332 267999999999997432 2233222111000 0 0
Q ss_pred CCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhh
Q 029437 155 KGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQY 191 (193)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~ 191 (193)
......+++.+||++|.|++++++.|.+.
T Consensus 129 --------~g~~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 129 --------LGLRPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred --------cCCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 00011358899999999999999998654
No 385
>PRK12288 GTPase RsgA; Reviewed
Probab=98.31 E-value=8.7e-07 Score=68.38 Aligned_cols=56 Identities=16% Similarity=0.124 Sum_probs=34.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccccCCC-----CCcc----eeEEEeCCEEEEEEEcCChhhhH
Q 029437 22 KILFLGLDNAGKTTLLHMLKDERLVQHQPT-----QYPT----SEELSIGKIKFKAFDLGGHQIAR 78 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~~~~~~~~~t-----~~~~----~~~~~~~~~~~~~~D~~G~~~~~ 78 (193)
.++++|.||+|||||+|+|.+......... .+.. ..-+.+.. ...++||||...+.
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~-~~~liDTPGir~~~ 271 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPH-GGDLIDSPGVREFG 271 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecC-CCEEEECCCCCccc
Confidence 478999999999999999997764432211 1111 11122221 12499999976543
No 386
>PRK13796 GTPase YqeH; Provisional
Probab=98.31 E-value=1.6e-06 Score=67.56 Aligned_cols=55 Identities=20% Similarity=0.309 Sum_probs=34.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC-----ccccCCCCCccee--EEEeCCEEEEEEEcCChh
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKDER-----LVQHQPTQYPTSE--ELSIGKIKFKAFDLGGHQ 75 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~~~-----~~~~~~t~~~~~~--~~~~~~~~~~~~D~~G~~ 75 (193)
..++.++|.+|+|||||+|++.... .....+.++.+.. .+..++ ...++||||..
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~-~~~l~DTPGi~ 221 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDD-GSFLYDTPGII 221 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCC-CcEEEECCCcc
Confidence 3579999999999999999998543 1111112222222 222222 24799999964
No 387
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.31 E-value=3.3e-06 Score=66.60 Aligned_cols=65 Identities=12% Similarity=0.106 Sum_probs=37.9
Q ss_pred CEEEEEEEcCChhhhHh-h---HHhh--cccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCC
Q 029437 63 KIKFKAFDLGGHQIARR-V---WKDY--YAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIP 134 (193)
Q Consensus 63 ~~~~~~~D~~G~~~~~~-~---~~~~--~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~ 134 (193)
++.+.++||+|...... + +... ...++.+++|+|+.-.... ......+-+. -.+--+++||.|..
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a---~~~a~~F~~~----~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAA---EAQAKAFKDS----VDVGSVIITKLDGH 252 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhH---HHHHHHHHhc----cCCcEEEEECccCC
Confidence 46899999999543221 1 1111 2356889999998654322 2222222111 23557899999986
No 388
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=98.28 E-value=2.3e-05 Score=59.88 Aligned_cols=120 Identities=23% Similarity=0.170 Sum_probs=64.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc--------------cC-C------------CCCcceeEEE-------------e
Q 029437 22 KILFLGLDNAGKTTLLHMLKDERLVQ--------------HQ-P------------TQYPTSEELS-------------I 61 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~~~~~~--------------~~-~------------t~~~~~~~~~-------------~ 61 (193)
..+|.|.-|||||||++.+....... .. . +.|.-..+++ -
T Consensus 3 VtvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~~ 82 (323)
T COG0523 3 VTVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRRR 82 (323)
T ss_pred EEEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhcc
Confidence 46889999999999999997554210 00 0 0011111100 1
Q ss_pred CCEEEEEEEcCChhhhHhhHHh-----hc---ccCCEEEEEEECCChhh-HHHHHHHHHHHHcCCCCCCCcEEEEEeCCC
Q 029437 62 GKIKFKAFDLGGHQIARRVWKD-----YY---AKVDAVVYLVDAYDKER-FAESKKELDALLSDEALANVPFLVLGNKID 132 (193)
Q Consensus 62 ~~~~~~~~D~~G~~~~~~~~~~-----~~---~~~d~vl~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~pviiv~nK~D 132 (193)
++....++.+.|.-.-...... .+ -..|.++-|+|+.+-.. .....+....-+.. .+ ++++||+|
T Consensus 83 ~~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~---AD---~ivlNK~D 156 (323)
T COG0523 83 DRPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAF---AD---VIVLNKTD 156 (323)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHh---Cc---EEEEeccc
Confidence 1244667777774222222211 12 24688999999976533 22223333333222 12 89999999
Q ss_pred CCCCCCHHHHHHhhC
Q 029437 133 IPYAASEEELRYHLG 147 (193)
Q Consensus 133 ~~~~~~~~~~~~~~~ 147 (193)
+.++...+.+...+.
T Consensus 157 lv~~~~l~~l~~~l~ 171 (323)
T COG0523 157 LVDAEELEALEARLR 171 (323)
T ss_pred CCCHHHHHHHHHHHH
Confidence 986554444444443
No 389
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.27 E-value=1.3e-06 Score=64.42 Aligned_cols=53 Identities=19% Similarity=0.086 Sum_probs=34.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccccC-----------CCCCcceeEEEeCCEEEEEEEcCChhhh
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDERLVQHQ-----------PTQYPTSEELSIGKIKFKAFDLGGHQIA 77 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~-----------~t~~~~~~~~~~~~~~~~~~D~~G~~~~ 77 (193)
..++++|++|+|||||+|++.+....... .|...... ...+ -.++||||...+
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~--~l~~--~~liDtPG~~~~ 184 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELF--HFHG--GLIADTPGFNEF 184 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEE--EcCC--cEEEeCCCcccc
Confidence 47899999999999999999876533211 12222222 2222 279999997543
No 390
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.25 E-value=6.5e-06 Score=63.91 Aligned_cols=117 Identities=12% Similarity=0.045 Sum_probs=62.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcccc---------CCCC---------------CcceeE-----------EEeCC
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQH---------QPTQ---------------YPTSEE-----------LSIGK 63 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~---------~~t~---------------~~~~~~-----------~~~~~ 63 (193)
+.-.++++||+|+||||++..|...-.... ..+. +..... ..+.+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~ 215 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRN 215 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcC
Confidence 345899999999999999998864311000 0010 101111 11235
Q ss_pred EEEEEEEcCChhhhH----hhHHhh--cccCCEEEEEEECCCh-hhHHHHHHHHHHHHcCCCCC-CCcEEEEEeCCCCCC
Q 029437 64 IKFKAFDLGGHQIAR----RVWKDY--YAKVDAVVYLVDAYDK-ERFAESKKELDALLSDEALA-NVPFLVLGNKIDIPY 135 (193)
Q Consensus 64 ~~~~~~D~~G~~~~~----~~~~~~--~~~~d~vl~v~d~~~~-~~~~~~~~~~~~~~~~~~~~-~~pviiv~nK~D~~~ 135 (193)
..+.++||+|..... ...... .....-.++|++++.. +.+.++...+.......... .-+-=+++||.|...
T Consensus 216 ~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~ 295 (374)
T PRK14722 216 KHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEAS 295 (374)
T ss_pred CCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCC
Confidence 688999999955322 222221 1234567899998764 33444444344332111100 012357789999863
No 391
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=98.23 E-value=1.6e-05 Score=60.80 Aligned_cols=23 Identities=48% Similarity=0.592 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~ 43 (193)
.-.+|.|.-|||||||++++...
T Consensus 5 pv~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 5 AVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred CEEEEEECCCCCHHHHHHHHHhc
Confidence 35788999999999999999754
No 392
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.21 E-value=2.4e-05 Score=55.75 Aligned_cols=66 Identities=14% Similarity=0.078 Sum_probs=37.2
Q ss_pred CEEEEEEEcCChhhhH----hhHHhhc--ccCCEEEEEEECCChhh-HHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC
Q 029437 63 KIKFKAFDLGGHQIAR----RVWKDYY--AKVDAVVYLVDAYDKER-FAESKKELDALLSDEALANVPFLVLGNKIDIPY 135 (193)
Q Consensus 63 ~~~~~~~D~~G~~~~~----~~~~~~~--~~~d~vl~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~ 135 (193)
+.++.++||+|..... ..+..++ ...+-+++|++++.... +..+......+ + +-=+++||.|...
T Consensus 83 ~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~-------~-~~~lIlTKlDet~ 154 (196)
T PF00448_consen 83 GYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAF-------G-IDGLILTKLDETA 154 (196)
T ss_dssp TSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHS-------S-TCEEEEESTTSSS
T ss_pred CCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcc-------c-CceEEEEeecCCC
Confidence 4679999999943322 1111111 25789999999976532 33332222222 1 2257799999864
Q ss_pred C
Q 029437 136 A 136 (193)
Q Consensus 136 ~ 136 (193)
.
T Consensus 155 ~ 155 (196)
T PF00448_consen 155 R 155 (196)
T ss_dssp T
T ss_pred C
Confidence 3
No 393
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.20 E-value=5.7e-06 Score=72.12 Aligned_cols=113 Identities=18% Similarity=0.202 Sum_probs=65.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcccc-----CCCCCcceeEEE-eCCEEEEEEEcCChh--------hhHhhHHhh---
Q 029437 22 KILFLGLDNAGKTTLLHMLKDERLVQH-----QPTQYPTSEELS-IGKIKFKAFDLGGHQ--------IARRVWKDY--- 84 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~~~~~~~-----~~t~~~~~~~~~-~~~~~~~~~D~~G~~--------~~~~~~~~~--- 84 (193)
=-+|+|++|+||||++..- +..|+-. ....+..+..++ +-.-.-.++||.|-. .....+..+
T Consensus 127 Wy~viG~pgsGKTtal~~s-gl~Fpl~~~~~~~~~~~~gT~~cdwwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~l 205 (1188)
T COG3523 127 WYMVIGPPGSGKTTALLNS-GLQFPLAEQMGALGLAGPGTRNCDWWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGL 205 (1188)
T ss_pred ceEEecCCCCCcchHHhcc-cccCcchhhhccccccCCCCcccCcccccceEEEcCCcceecccCcchhhHHHHHHHHHH
Confidence 3689999999999999753 2222211 011111122222 223356788999821 122333322
Q ss_pred ------cccCCEEEEEEECCCh------hh---HHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC
Q 029437 85 ------YAKVDAVVYLVDAYDK------ER---FAESKKELDALLSDEALANVPFLVLGNKIDIPYA 136 (193)
Q Consensus 85 ------~~~~d~vl~v~d~~~~------~~---~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~ 136 (193)
.+..++|++.+|+++- +. ...++.-+.++-...+ -..||++++||.|+.+.
T Consensus 206 Lkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~-~~~PVYl~lTk~Dll~G 271 (1188)
T COG3523 206 LKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLH-ARLPVYLVLTKADLLPG 271 (1188)
T ss_pred HHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhc-cCCceEEEEeccccccc
Confidence 3478999999998641 11 2233344444433322 48999999999999853
No 394
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=98.17 E-value=3.5e-06 Score=59.16 Aligned_cols=68 Identities=15% Similarity=0.143 Sum_probs=40.6
Q ss_pred EEEEEEEcCChhhhHhh--HHhh---cccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCC
Q 029437 64 IKFKAFDLGGHQIARRV--WKDY---YAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAA 137 (193)
Q Consensus 64 ~~~~~~D~~G~~~~~~~--~~~~---~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~ 137 (193)
....++.+.|...-..+ .... .-..+.++.|+|+.+..........+.+.+.... ++++||+|+.+..
T Consensus 85 ~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~AD------vIvlnK~D~~~~~ 157 (178)
T PF02492_consen 85 PDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFAD------VIVLNKIDLVSDE 157 (178)
T ss_dssp -SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-S------EEEEE-GGGHHHH
T ss_pred cCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhcC------EEEEeccccCChh
Confidence 45677788884333332 1111 1256899999999775444455555555554432 9999999998543
No 395
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.14 E-value=3.5e-06 Score=66.59 Aligned_cols=58 Identities=21% Similarity=0.218 Sum_probs=45.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEe-CCEEEEEEEcCCh
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSI-GKIKFKAFDLGGH 74 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~D~~G~ 74 (193)
++..+.|+++|-||+||||+||+|.+.+-+....|+|-+.+--.+ -.-.+.+.|+||.
T Consensus 311 ~~~~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls~~v~LCDCPGL 369 (562)
T KOG1424|consen 311 YKDVVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLSPSVCLCDCPGL 369 (562)
T ss_pred CCceeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcCCCceecCCCCc
Confidence 344699999999999999999999999988877777765543322 2236789999993
No 396
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.14 E-value=8.6e-05 Score=51.77 Aligned_cols=65 Identities=20% Similarity=0.149 Sum_probs=38.2
Q ss_pred CEEEEEEEcCChhhhH----hhHHhh--cccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCC
Q 029437 63 KIKFKAFDLGGHQIAR----RVWKDY--YAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIP 134 (193)
Q Consensus 63 ~~~~~~~D~~G~~~~~----~~~~~~--~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~ 134 (193)
+..+.++|++|..... ...... ....+.+++|+|...... ..+....+.+.. + ..-++.||.|..
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~---~-~~~viltk~D~~ 152 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEAL---G-ITGVILTKLDGD 152 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhC---C-CCEEEEECCcCC
Confidence 4568999999974321 111111 124899999999965432 223334443221 2 256778999987
No 397
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.13 E-value=0.00012 Score=51.25 Aligned_cols=87 Identities=18% Similarity=0.218 Sum_probs=47.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEE----EcCC-hhhhHhhHHhhcccCCEEE
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAF----DLGG-HQIARRVWKDYYAKVDAVV 92 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~----D~~G-~~~~~~~~~~~~~~~d~vl 92 (193)
...-.++++|++|||||||++.+.+... +..+.+.+.+..+... +..| +.+--........+.+.++
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--------p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lll 94 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLI--------PNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYL 94 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCC--------CCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 3445799999999999999999987542 1223333333222111 1333 3222333344455555444
Q ss_pred EEEEC----CChhhHHHHHHHHHHHH
Q 029437 93 YLVDA----YDKERFAESKKELDALL 114 (193)
Q Consensus 93 ~v~d~----~~~~~~~~~~~~~~~~~ 114 (193)
+|- -|+.+...+.+++..+.
T Consensus 95 --LDEPts~LD~~~~~~l~~~l~~~~ 118 (177)
T cd03222 95 --FDEPSAYLDIEQRLNAARAIRRLS 118 (177)
T ss_pred --EECCcccCCHHHHHHHHHHHHHHH
Confidence 454 34555555556666553
No 398
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.11 E-value=7.2e-06 Score=61.92 Aligned_cols=56 Identities=18% Similarity=0.166 Sum_probs=35.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccccCC---C--CC--cc--eeEEEeCCEEEEEEEcCChhhh
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDERLVQHQP---T--QY--PT--SEELSIGKIKFKAFDLGGHQIA 77 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~---t--~~--~~--~~~~~~~~~~~~~~D~~G~~~~ 77 (193)
..++++|++|+|||||+|.+.+........ + .+ .+ ...+.... ...++||||...+
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~-~~~liDtPG~~~~ 226 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPG-GGLLIDTPGFREF 226 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCC-CCEEEECCCCCcc
Confidence 579999999999999999998765432111 0 11 11 11222221 2268999998654
No 399
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.10 E-value=1.7e-05 Score=58.31 Aligned_cols=113 Identities=15% Similarity=0.185 Sum_probs=70.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcccc-----CCCCCcceeEEE--eCC--EEEEEEEcCCh-------hh-----
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQH-----QPTQYPTSEELS--IGK--IKFKAFDLGGH-------QI----- 76 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-----~~t~~~~~~~~~--~~~--~~~~~~D~~G~-------~~----- 76 (193)
--.++|+-+|..|.|||||+..+.+..|... .|++.....+.+ -++ .++++.||.|- .+
T Consensus 40 GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iV 119 (406)
T KOG3859|consen 40 GFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIV 119 (406)
T ss_pred CceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHH
Confidence 3568999999999999999999998876542 334433333332 233 57899999981 11
Q ss_pred ------hHhhHHhhc-----------ccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC
Q 029437 77 ------ARRVWKDYY-----------AKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY 135 (193)
Q Consensus 77 ------~~~~~~~~~-----------~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~ 135 (193)
+...+++.+ .+.|+++|.+..+.- ++..++-....-+. .++.+|-++-|.|...
T Consensus 120 dyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH-~LKslDLvtmk~Ld----skVNIIPvIAKaDtis 190 (406)
T KOG3859|consen 120 DYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGH-SLKSLDLVTMKKLD----SKVNIIPVIAKADTIS 190 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCc-chhHHHHHHHHHHh----hhhhhHHHHHHhhhhh
Confidence 111111111 367888888877543 34444433333333 3677788888999763
No 400
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.07 E-value=7e-06 Score=64.71 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=20.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~ 42 (193)
..-+++++|++|+||||++..|.+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 445899999999999999997754
No 401
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=98.07 E-value=1.3e-05 Score=56.57 Aligned_cols=125 Identities=18% Similarity=0.244 Sum_probs=64.8
Q ss_pred EEEEEEEcCChhhh-------HhhHHhhcc--cCCEEEEEEECC---Chhh-HHHHHHHHHHHHcCCCCCCCcEEEEEeC
Q 029437 64 IKFKAFDLGGHQIA-------RRVWKDYYA--KVDAVVYLVDAY---DKER-FAESKKELDALLSDEALANVPFLVLGNK 130 (193)
Q Consensus 64 ~~~~~~D~~G~~~~-------~~~~~~~~~--~~d~vl~v~d~~---~~~~-~~~~~~~~~~~~~~~~~~~~pviiv~nK 130 (193)
-.+-++|.|||-.. .....+.-+ ---+++|++|+. +... +.....-+..... ..+|-|=+.+|
T Consensus 98 ddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~----lE~P~INvlsK 173 (273)
T KOG1534|consen 98 DDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMIS----LEVPHINVLSK 173 (273)
T ss_pred CCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHH----hcCcchhhhhH
Confidence 46889999997542 222222211 123667777762 2221 2222233333332 38899999999
Q ss_pred CCCCCCCCHHHHHHhhCCCcccc-CCCccccCC------------C--CCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 131 IDIPYAASEEELRYHLGLSNFTT-GKGKVNLAD------------S--NVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 131 ~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~------------~--~~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
+|+.......++..-++.....- ..+..+... . ...-+++++.-....+.++.++..|..++
T Consensus 174 MDLlk~~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~ai 250 (273)
T KOG1534|consen 174 MDLLKDKNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDAI 250 (273)
T ss_pred HHHhhhhhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHHH
Confidence 99986655555555444322110 000000000 0 00235677777777777777777766543
No 402
>PRK00098 GTPase RsgA; Reviewed
Probab=98.04 E-value=1.1e-05 Score=61.18 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCc
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDERL 45 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~~ 45 (193)
..++++|++|+|||||+|++.+...
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~~ 189 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDLE 189 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcC
Confidence 4689999999999999999987653
No 403
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.03 E-value=9.2e-06 Score=60.73 Aligned_cols=23 Identities=35% Similarity=0.505 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 029437 22 KILFLGLDNAGKTTLLHMLKDER 44 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~~~ 44 (193)
..+++|.+|+|||||+|+|....
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~ 188 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPEL 188 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchh
Confidence 68889999999999999998643
No 404
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.99 E-value=2e-05 Score=61.41 Aligned_cols=123 Identities=13% Similarity=0.033 Sum_probs=64.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcc--------ccCC--------------CCCcceeEE-------------E-eCC
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKDERLV--------QHQP--------------TQYPTSEEL-------------S-IGK 63 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~~~~~--------~~~~--------------t~~~~~~~~-------------~-~~~ 63 (193)
.-.|+++|++||||||++..|...-.. ...+ ..+...... . ..+
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~ 320 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 320 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence 358999999999999999988521100 0000 000000000 0 013
Q ss_pred EEEEEEEcCChhhhH----hhHHhhc--ccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC-
Q 029437 64 IKFKAFDLGGHQIAR----RVWKDYY--AKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA- 136 (193)
Q Consensus 64 ~~~~~~D~~G~~~~~----~~~~~~~--~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~- 136 (193)
.++.++||+|..... ..+...+ ...+.+++|+|++-.. +.+.+....+- . -..-=+++||.|....
T Consensus 321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--~d~~~i~~~F~-~----~~idglI~TKLDET~k~ 393 (436)
T PRK11889 321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFK-D----IHIDGIVFTKFDETASS 393 (436)
T ss_pred CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh--HHHHHHHHHhc-C----CCCCEEEEEcccCCCCc
Confidence 588999999953321 1112222 2457889999985432 22333333331 1 1123688999998742
Q ss_pred CCHHHHHHhhCCC
Q 029437 137 ASEEELRYHLGLS 149 (193)
Q Consensus 137 ~~~~~~~~~~~~~ 149 (193)
...-.+....+.+
T Consensus 394 G~iLni~~~~~lP 406 (436)
T PRK11889 394 GELLKIPAVSSAP 406 (436)
T ss_pred cHHHHHHHHHCcC
Confidence 2333444444433
No 405
>PRK04195 replication factor C large subunit; Provisional
Probab=97.99 E-value=4.3e-05 Score=61.94 Aligned_cols=38 Identities=24% Similarity=0.287 Sum_probs=26.3
Q ss_pred HHHHHHHhhCCCCCccEEEEEcCCCCCHHHHHHHHhcC
Q 029437 6 WFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~ 43 (193)
.++.|+...........+++.||||+||||+++.+...
T Consensus 25 ~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~e 62 (482)
T PRK04195 25 QLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALAND 62 (482)
T ss_pred HHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 34444433223333567999999999999999999764
No 406
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.98 E-value=2.2e-05 Score=51.95 Aligned_cols=95 Identities=19% Similarity=0.232 Sum_probs=52.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCC------------------------hhhh
Q 029437 22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGG------------------------HQIA 77 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G------------------------~~~~ 77 (193)
-++|.|++|+|||++++++............ ...+..++.+. ....
T Consensus 6 ~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l 75 (131)
T PF13401_consen 6 ILVISGPPGSGKTTLIKRLARQLNAEAEIKN----------HPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDEL 75 (131)
T ss_dssp -EEEEE-TTSSHHHHHHHHHHHHHHHHHHCC----------CEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHH
T ss_pred ccEEEcCCCCCHHHHHHHHHHHhHHhhhccC----------CCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHH
Confidence 5889999999999999999764322100000 11111222211 1122
Q ss_pred HhhHHhhcccCCEEEEEEECCChh-hHHHHHHHHHHHHcCCCCCCCcEEEEEeC
Q 029437 78 RRVWKDYYAKVDAVVYLVDAYDKE-RFAESKKELDALLSDEALANVPFLVLGNK 130 (193)
Q Consensus 78 ~~~~~~~~~~~d~vl~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~pviiv~nK 130 (193)
.......+......++++|-.+.- + ....+.+..+.+ ..+++++++++-
T Consensus 76 ~~~~~~~l~~~~~~~lviDe~~~l~~-~~~l~~l~~l~~---~~~~~vvl~G~~ 125 (131)
T PF13401_consen 76 RSLLIDALDRRRVVLLVIDEADHLFS-DEFLEFLRSLLN---ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHHHHCTEEEEEEETTHHHHT-HHHHHHHHHHTC---SCBEEEEEEESS
T ss_pred HHHHHHHHHhcCCeEEEEeChHhcCC-HHHHHHHHHHHh---CCCCeEEEEECh
Confidence 233333344555689999986653 2 334444455544 568889998875
No 407
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.97 E-value=2.5e-05 Score=53.51 Aligned_cols=52 Identities=23% Similarity=0.185 Sum_probs=34.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhH
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVW 81 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~ 81 (193)
..-.|+++||+|||||||++.+..-. .+..+.+.+++-.++- .+.+.++...
T Consensus 28 ~Ge~iaitGPSG~GKStllk~va~Li--------sp~~G~l~f~Ge~vs~---~~pea~Rq~V 79 (223)
T COG4619 28 AGEFIAITGPSGCGKSTLLKIVASLI--------SPTSGTLLFEGEDVST---LKPEAYRQQV 79 (223)
T ss_pred CCceEEEeCCCCccHHHHHHHHHhcc--------CCCCceEEEcCccccc---cChHHHHHHH
Confidence 44579999999999999999988643 4455666666644433 3444454433
No 408
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.95 E-value=7e-05 Score=57.91 Aligned_cols=22 Identities=36% Similarity=0.475 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 029437 22 KILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~~ 43 (193)
-.+|.|.-|||||||++.+...
T Consensus 6 v~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 6 VTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 4788999999999999999753
No 409
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.95 E-value=3.5e-05 Score=59.83 Aligned_cols=109 Identities=17% Similarity=0.206 Sum_probs=61.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCC-----CCCc-----------------------------ceeEEEeCC
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDERLV-QHQP-----TQYP-----------------------------TSEELSIGK 63 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~-----t~~~-----------------------------~~~~~~~~~ 63 (193)
+.-.|+++||.|+||||-+..|...-.. .... |.+. ...--.+.+
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~ 281 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRD 281 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhc
Confidence 3567999999999999988776433220 0001 1110 000012225
Q ss_pred EEEEEEEcCChhhhH----hhHHhhcc--cCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcE-EEEEeCCCCCC
Q 029437 64 IKFKAFDLGGHQIAR----RVWKDYYA--KVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPF-LVLGNKIDIPY 135 (193)
Q Consensus 64 ~~~~~~D~~G~~~~~----~~~~~~~~--~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pv-iiv~nK~D~~~ 135 (193)
.++.++||.|..... ..+..++. ...-+-+|++++.. ...+.+.+..+ ...|+ =+++||.|...
T Consensus 282 ~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f------~~~~i~~~I~TKlDET~ 352 (407)
T COG1419 282 CDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQF------SLFPIDGLIFTKLDETT 352 (407)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHh------ccCCcceeEEEcccccC
Confidence 689999999965443 23333333 23456778888654 23444444444 12333 47899999874
No 410
>PRK13695 putative NTPase; Provisional
Probab=97.95 E-value=0.00044 Score=48.30 Aligned_cols=21 Identities=38% Similarity=0.407 Sum_probs=18.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHh
Q 029437 21 AKILFLGLDNAGKTTLLHMLK 41 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~ 41 (193)
++|+++|++|+|||||+..+.
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~ 21 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIA 21 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999864
No 411
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.95 E-value=0.00012 Score=58.22 Aligned_cols=66 Identities=15% Similarity=0.076 Sum_probs=37.4
Q ss_pred CEEEEEEEcCChhhhH----hhHHhhcc---cCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC
Q 029437 63 KIKFKAFDLGGHQIAR----RVWKDYYA---KVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY 135 (193)
Q Consensus 63 ~~~~~~~D~~G~~~~~----~~~~~~~~---~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~ 135 (193)
+.++.++||+|..... ..+...+. ....+.+|++++-. ...+.+.+..+ .. .+ +--+++||.|...
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f-~~---~~-~~~vI~TKlDet~ 371 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHF-SR---LP-LDGLIFTKLDETS 371 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHh-CC---CC-CCEEEEecccccc
Confidence 4689999999964331 22223333 33577888888544 22333333333 11 11 2268899999863
No 412
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.94 E-value=3.4e-05 Score=62.23 Aligned_cols=110 Identities=19% Similarity=0.188 Sum_probs=59.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcC--------Cc--cccCC--------------CCCcceeEE-----------EeCC
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDE--------RL--VQHQP--------------TQYPTSEEL-----------SIGK 63 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~--------~~--~~~~~--------------t~~~~~~~~-----------~~~~ 63 (193)
..-.|+|+|++|+||||++..|... .. ....+ ..+...... ...+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~ 428 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRD 428 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhcc
Confidence 4568999999999999999887532 10 00000 000000100 1124
Q ss_pred EEEEEEEcCChhhhHhh----HHhhc-ccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC
Q 029437 64 IKFKAFDLGGHQIARRV----WKDYY-AKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY 135 (193)
Q Consensus 64 ~~~~~~D~~G~~~~~~~----~~~~~-~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~ 135 (193)
..+.++||+|....... +.... ......++|++.... ...+.+.+..+-. ..+.-+|+||.|...
T Consensus 429 ~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss--~~Dl~eii~~f~~-----~~~~gvILTKlDEt~ 498 (559)
T PRK12727 429 YKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAH--FSDLDEVVRRFAH-----AKPQGVVLTKLDETG 498 (559)
T ss_pred CCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCC--hhHHHHHHHHHHh-----hCCeEEEEecCcCcc
Confidence 67999999995432211 11110 112356777777543 3334444444321 235679999999863
No 413
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=97.94 E-value=0.00054 Score=53.71 Aligned_cols=36 Identities=19% Similarity=0.303 Sum_probs=28.0
Q ss_pred hHHHHHHHHHhhCCCCCccEEEEEcCCCCCHHHHHHHHh
Q 029437 3 LLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLK 41 (193)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~ 41 (193)
=.+-|++..++.+ -.+=|+|+||..+|||||++++.
T Consensus 3 ~~~iykDIa~RT~---GdIYiGVVGPVRTGKSTFIKRFM 38 (492)
T PF09547_consen 3 NFDIYKDIAERTG---GDIYIGVVGPVRTGKSTFIKRFM 38 (492)
T ss_pred chhHHHHHHHhcC---CceEEEeecCcccCchhHHHHHH
Confidence 3455666665554 44779999999999999999984
No 414
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.92 E-value=0.00019 Score=44.58 Aligned_cols=97 Identities=15% Similarity=0.036 Sum_probs=56.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhh-HHhhcccCCEEEEEEECCChh
Q 029437 23 ILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRV-WKDYYAKVDAVVYLVDAYDKE 101 (193)
Q Consensus 23 i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~-~~~~~~~~d~vl~v~d~~~~~ 101 (193)
+++.|.+|+||||+...+...--. .+.....++ .+.++|+++....... .......+|.++++++....
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~-----~g~~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~~- 71 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK-----RGKRVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPEAL- 71 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-----CCCeEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCCchh-
Confidence 678899999999999887543211 111222222 7899999987543321 13445678999999988544
Q ss_pred hHHHHHHHHHHHHcCCCCCCCcEEEEEe
Q 029437 102 RFAESKKELDALLSDEALANVPFLVLGN 129 (193)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~pviiv~n 129 (193)
+....................+..++.|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~vv~N 99 (99)
T cd01983 72 AVLGARRLTEVVLELAIEGLRPVGVVVN 99 (99)
T ss_pred hHHHHHHHHHHHHHhhccCCceEEEEeC
Confidence 3444444433333333334555555544
No 415
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.91 E-value=0.00041 Score=46.28 Aligned_cols=26 Identities=31% Similarity=0.465 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~ 44 (193)
....+++.|++|+|||++++.+...-
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 34579999999999999999987643
No 416
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=97.89 E-value=5.3e-05 Score=60.20 Aligned_cols=121 Identities=17% Similarity=0.149 Sum_probs=77.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC------------cc-------ccCCCCCcceeE----------------EEeCCEEE
Q 029437 22 KILFLGLDNAGKTTLLHMLKDER------------LV-------QHQPTQYPTSEE----------------LSIGKIKF 66 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~~~------------~~-------~~~~t~~~~~~~----------------~~~~~~~~ 66 (193)
++-++-+..-|||||..+|.... |. +...|+..+... -+..+.-+
T Consensus 21 NmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~FLi 100 (842)
T KOG0469|consen 21 NMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNGFLI 100 (842)
T ss_pred cceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcceeE
Confidence 57788899999999999984321 11 011111111111 11224668
Q ss_pred EEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCC---CCCCHHHHH
Q 029437 67 KAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIP---YAASEEELR 143 (193)
Q Consensus 67 ~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~---~~~~~~~~~ 143 (193)
+++|.||+..+.+.....++-.|+.+.|+|..+.-..+ ....+.+.+.+ ++.-+++.||+|.. -+.+.+++-
T Consensus 101 NLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQ-TETVLrQA~~E----RIkPvlv~NK~DRAlLELq~~~EeLy 175 (842)
T KOG0469|consen 101 NLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQ-TETVLRQAIAE----RIKPVLVMNKMDRALLELQLSQEELY 175 (842)
T ss_pred EeccCCCcccchhhhhheeEeccCcEEEEEccCceEec-hHHHHHHHHHh----hccceEEeehhhHHHHhhcCCHHHHH
Confidence 99999999999998888899999999999998763322 22333333333 44457889999976 345566654
Q ss_pred HhhC
Q 029437 144 YHLG 147 (193)
Q Consensus 144 ~~~~ 147 (193)
+.+.
T Consensus 176 qtf~ 179 (842)
T KOG0469|consen 176 QTFQ 179 (842)
T ss_pred HHHH
Confidence 4443
No 417
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.89 E-value=0.00024 Score=53.41 Aligned_cols=115 Identities=15% Similarity=0.222 Sum_probs=68.3
Q ss_pred hHHHHHHHHHhhCCCCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhh-----
Q 029437 3 LLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIA----- 77 (193)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~----- 77 (193)
+++-++.++...+ .....+++++|++|-|||++++++...-.... +.. .....+....+|.....
T Consensus 45 ~L~~L~~Ll~~P~-~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~----d~~-----~~~~PVv~vq~P~~p~~~~~Y~ 114 (302)
T PF05621_consen 45 ALDRLEELLEYPK-RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQS----DED-----AERIPVVYVQMPPEPDERRFYS 114 (302)
T ss_pred HHHHHHHHHhCCc-ccCCCceEEecCCCCcHHHHHHHHHHHCCCCC----CCC-----CccccEEEEecCCCCChHHHHH
Confidence 4666777777655 33446799999999999999999986442211 111 11346666666652111
Q ss_pred -------------------HhhHHhhcccCCEEEEEEECCCh---hhHH---HHHHHHHHHHcCCCCCCCcEEEEEeC
Q 029437 78 -------------------RRVWKDYYAKVDAVVYLVDAYDK---ERFA---ESKKELDALLSDEALANVPFLVLGNK 130 (193)
Q Consensus 78 -------------------~~~~~~~~~~~d~vl~v~d~~~~---~~~~---~~~~~~~~~~~~~~~~~~pviiv~nK 130 (193)
.......++....=++++|--+. .+.. .....++.+ .+..++|+|.++++
T Consensus 115 ~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L---~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 115 AILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFL---GNELQIPIVGVGTR 189 (302)
T ss_pred HHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHH---hhccCCCeEEeccH
Confidence 12223445667777889986432 1222 233333344 23368999999974
No 418
>PHA02774 E1; Provisional
Probab=97.89 E-value=0.00043 Score=56.46 Aligned_cols=41 Identities=15% Similarity=0.188 Sum_probs=33.5
Q ss_pred chHHHHHHHHHhhCCCCCccEEEEEcCCCCCHHHHHHHHhc
Q 029437 2 FLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~ 42 (193)
.++.|+..+..+.+...+.-.+++.||||+|||.|..++..
T Consensus 416 ~~~~fl~~lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~ 456 (613)
T PHA02774 416 EFISFLTALKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIK 456 (613)
T ss_pred cHHHHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHH
Confidence 35667777777777766667999999999999999999875
No 419
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.87 E-value=1.3e-05 Score=52.41 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 029437 22 KILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~~ 43 (193)
+|+|.|+|||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999763
No 420
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.86 E-value=4.1e-05 Score=57.24 Aligned_cols=71 Identities=23% Similarity=0.285 Sum_probs=42.9
Q ss_pred HHHHHHHHHhhCC-CCCccEEEEEcCCCCCHHHHHHHHhcCCcc-----ccCCCCCcc---eeEEEe-CCEEEEEEEcCC
Q 029437 4 LDWFYGVLASLGL-WQKEAKILFLGLDNAGKTTLLHMLKDERLV-----QHQPTQYPT---SEELSI-GKIKFKAFDLGG 73 (193)
Q Consensus 4 ~~~~~~~~~~~~~-~~~~~~i~v~G~~~~GKssl~~~l~~~~~~-----~~~~t~~~~---~~~~~~-~~~~~~~~D~~G 73 (193)
+.|+..=+.+..+ ...+.+++|+|.||+|||||+|++...... ...+..+.+ .+.+.+ ..-.+-++||||
T Consensus 126 l~~~~~~l~r~irt~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPG 205 (335)
T KOG2485|consen 126 LTILSEELVRFIRTLNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPG 205 (335)
T ss_pred HHHHHHHHHHhhcccCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCC
Confidence 3444333333333 568899999999999999999987544322 222222221 122333 234578899999
Q ss_pred h
Q 029437 74 H 74 (193)
Q Consensus 74 ~ 74 (193)
.
T Consensus 206 i 206 (335)
T KOG2485|consen 206 I 206 (335)
T ss_pred c
Confidence 4
No 421
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.86 E-value=3.2e-05 Score=55.05 Aligned_cols=26 Identities=31% Similarity=0.510 Sum_probs=22.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~ 44 (193)
+.-.++|+||+|||||||++++.+-+
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCc
Confidence 34578999999999999999998876
No 422
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.86 E-value=7.3e-05 Score=60.04 Aligned_cols=23 Identities=26% Similarity=0.302 Sum_probs=19.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~ 42 (193)
.-.++++|++||||||.+..|..
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHH
Confidence 34699999999999999988863
No 423
>PRK10867 signal recognition particle protein; Provisional
Probab=97.84 E-value=0.00018 Score=57.20 Aligned_cols=80 Identities=16% Similarity=0.103 Sum_probs=42.3
Q ss_pred CEEEEEEEcCChhhh----HhhHHhh--cccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCC-C
Q 029437 63 KIKFKAFDLGGHQIA----RRVWKDY--YAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIP-Y 135 (193)
Q Consensus 63 ~~~~~~~D~~G~~~~----~~~~~~~--~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~-~ 135 (193)
++.+.++||+|.... -...... .-..+.+++|+|+...+ ...+....+.... + ..-+++||.|.. .
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq---~av~~a~~F~~~~---~-i~giIlTKlD~~~r 255 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQ---DAVNTAKAFNEAL---G-LTGVILTKLDGDAR 255 (433)
T ss_pred CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHH---HHHHHHHHHHhhC---C-CCEEEEeCccCccc
Confidence 467999999994321 1111111 12567889999986542 3333333332211 1 124677999965 2
Q ss_pred CCCHHHHHHhhCCC
Q 029437 136 AASEEELRYHLGLS 149 (193)
Q Consensus 136 ~~~~~~~~~~~~~~ 149 (193)
....-.+....+.+
T Consensus 256 gG~alsi~~~~~~P 269 (433)
T PRK10867 256 GGAALSIRAVTGKP 269 (433)
T ss_pred ccHHHHHHHHHCcC
Confidence 22344455555544
No 424
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.83 E-value=0.0004 Score=55.22 Aligned_cols=81 Identities=14% Similarity=0.073 Sum_probs=44.2
Q ss_pred CEEEEEEEcCChhhh----HhhHHhh--cccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCC-C
Q 029437 63 KIKFKAFDLGGHQIA----RRVWKDY--YAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIP-Y 135 (193)
Q Consensus 63 ~~~~~~~D~~G~~~~----~~~~~~~--~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~-~ 135 (193)
+..+.++||+|.... -...... .-..+.+++|+|+.... ...+....+.... + ..=++.||.|.. .
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~~a~~f~~~v---~-i~giIlTKlD~~~~ 254 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAVNTAKTFNERL---G-LTGVVLTKLDGDAR 254 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHHHHHHHHHhhC---C-CCEEEEeCccCccc
Confidence 467999999994322 1111111 23568899999986542 3333333332211 1 235779999965 2
Q ss_pred CCCHHHHHHhhCCCc
Q 029437 136 AASEEELRYHLGLSN 150 (193)
Q Consensus 136 ~~~~~~~~~~~~~~~ 150 (193)
......+....+.+.
T Consensus 255 ~G~~lsi~~~~~~PI 269 (428)
T TIGR00959 255 GGAALSVRSVTGKPI 269 (428)
T ss_pred ccHHHHHHHHHCcCE
Confidence 233445555555444
No 425
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.83 E-value=2.6e-05 Score=60.07 Aligned_cols=39 Identities=23% Similarity=0.432 Sum_probs=29.5
Q ss_pred chHHHHHHHHHhhCCCCCccEEEEEcCCCCCHHHHHHHHhc
Q 029437 2 FLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~ 42 (193)
.+++|++.+..-. ...+.-++++||||+|||||.++|..
T Consensus 62 ~lv~~l~~~a~g~--~~~r~il~L~GPPGsGKStla~~La~ 100 (361)
T smart00763 62 RFVNYFKSAAQGL--EERKQILYLLGPVGGGKSSLVECLKR 100 (361)
T ss_pred HHHHHHHHHHhcC--CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3578888888432 23334589999999999999999864
No 426
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.82 E-value=0.00028 Score=48.80 Aligned_cols=26 Identities=31% Similarity=0.448 Sum_probs=22.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~ 44 (193)
+.-.++++|++|+|||||++.+.+..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44579999999999999999998764
No 427
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.81 E-value=7.9e-05 Score=62.74 Aligned_cols=110 Identities=14% Similarity=0.080 Sum_probs=59.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcccc---C------CCC---------------CcceeEE-----------EeCCE
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKDERLVQH---Q------PTQ---------------YPTSEEL-----------SIGKI 64 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~---~------~t~---------------~~~~~~~-----------~~~~~ 64 (193)
.-.|+++|+.|+||||.+..+...-.... . .+. +...... ...+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~ 264 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDK 264 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCC
Confidence 34689999999999999988864321000 0 000 0000000 12245
Q ss_pred EEEEEEcCChh----hhHhhHHhh--cccCCEEEEEEECCCh-hhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCC
Q 029437 65 KFKAFDLGGHQ----IARRVWKDY--YAKVDAVVYLVDAYDK-ERFAESKKELDALLSDEALANVPFLVLGNKIDIP 134 (193)
Q Consensus 65 ~~~~~D~~G~~----~~~~~~~~~--~~~~d~vl~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~ 134 (193)
++.++||+|-. ......... ....+-+++|+|++.. +.+.++...+..... --+-=+|+||.|..
T Consensus 265 D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~~~-----~~i~glIlTKLDEt 336 (767)
T PRK14723 265 HLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRHGAG-----EDVDGCIITKLDEA 336 (767)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhhccc-----CCCCEEEEeccCCC
Confidence 79999999932 222222221 2345778999999753 334433333332210 01235789999976
No 428
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.81 E-value=2e-05 Score=60.66 Aligned_cols=56 Identities=20% Similarity=0.336 Sum_probs=43.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcce--eEEEeCCEEEEEEEcCCh
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTS--EELSIGKIKFKAFDLGGH 74 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~D~~G~ 74 (193)
+..++++|+|-|++||||++|+|..+......++.+.+. ..+..+ -.+.+.|.||.
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~Ld-k~i~llDsPgi 307 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKLD-KKIRLLDSPGI 307 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheecc-CCceeccCCce
Confidence 577999999999999999999999888766555555543 233333 47889999994
No 429
>PRK08118 topology modulation protein; Reviewed
Probab=97.81 E-value=1.8e-05 Score=54.92 Aligned_cols=22 Identities=36% Similarity=0.665 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 029437 22 KILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~~ 43 (193)
+|+|+|++|||||||...+...
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999998754
No 430
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.81 E-value=2.3e-05 Score=44.65 Aligned_cols=21 Identities=33% Similarity=0.559 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029437 22 KILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~ 42 (193)
..+|+|+.|+||||++.++..
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998753
No 431
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.78 E-value=0.00024 Score=56.60 Aligned_cols=63 Identities=21% Similarity=0.203 Sum_probs=36.4
Q ss_pred EEEEEEEcCChhhhHh-hH---Hh--hcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCc-EEEEEeCCCCC
Q 029437 64 IKFKAFDLGGHQIARR-VW---KD--YYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVP-FLVLGNKIDIP 134 (193)
Q Consensus 64 ~~~~~~D~~G~~~~~~-~~---~~--~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~D~~ 134 (193)
..+.++||+|...... ++ .. ....+|.+++|+|++... ...+....+-. ..+ .-+++||.|..
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~-----~l~i~gvIlTKlD~~ 245 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHE-----AVGIGGIIITKLDGT 245 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHh-----cCCCCEEEEecccCC
Confidence 4789999999544321 11 11 123678999999986642 22222333211 122 25778999975
No 432
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.78 E-value=0.00073 Score=45.69 Aligned_cols=26 Identities=35% Similarity=0.551 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~ 44 (193)
..-.++|+|++|+|||||++.+.+..
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 34568999999999999999998754
No 433
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.76 E-value=2.4e-05 Score=54.83 Aligned_cols=23 Identities=43% Similarity=0.616 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~ 43 (193)
.+|+|+|+|||||||+...|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999765
No 434
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.76 E-value=4.5e-05 Score=55.06 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDER 44 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~ 44 (193)
--++|+||+|||||||++.+.+-+
T Consensus 32 e~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 32 EFVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 458999999999999999997755
No 435
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.76 E-value=0.0002 Score=53.76 Aligned_cols=86 Identities=16% Similarity=0.079 Sum_probs=58.5
Q ss_pred cccCCEEEEEEECCChh-hHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHH--HHHhhCCCccccCCCccccC
Q 029437 85 YAKVDAVVYLVDAYDKE-RFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEE--LRYHLGLSNFTTGKGKVNLA 161 (193)
Q Consensus 85 ~~~~d~vl~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 161 (193)
+.+.|-+++|+.+.+|+ +...+.+++-.. ...++..++++||+|+........ ....+..
T Consensus 77 v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~a----e~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~------------- 139 (301)
T COG1162 77 VANNDQAIIVVSLVDPDFNTNLLDRYLVLA----EAGGIEPVIVLNKIDLLDDEEAAVKELLREYED------------- 139 (301)
T ss_pred ccccceEEEEEeccCCCCCHHHHHHHHHHH----HHcCCcEEEEEEccccCcchHHHHHHHHHHHHh-------------
Confidence 34578888888888774 334444444433 235778888899999986554442 2222221
Q ss_pred CCCCcceEEEEeeeecCCChhhHHHhhhhh
Q 029437 162 DSNVRPLEVFMCSIVRKMGYGDGFKWLSQY 191 (193)
Q Consensus 162 ~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~ 191 (193)
..++++.+|++++.|++++.+++...
T Consensus 140 ----~gy~v~~~s~~~~~~~~~l~~~l~~~ 165 (301)
T COG1162 140 ----IGYPVLFVSAKNGDGLEELAELLAGK 165 (301)
T ss_pred ----CCeeEEEecCcCcccHHHHHHHhcCC
Confidence 23688999999999999999988654
No 436
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.75 E-value=0.0005 Score=46.17 Aligned_cols=103 Identities=16% Similarity=0.154 Sum_probs=60.2
Q ss_pred EEEcCCCCCHHHHHHHHhcCCccccC----CCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCC
Q 029437 24 LFLGLDNAGKTTLLHMLKDERLVQHQ----PTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYD 99 (193)
Q Consensus 24 ~v~G~~~~GKssl~~~l~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~ 99 (193)
+.-|.+|+|||++.-.+...--.... ...++....+. +.+.++|+|+... ......+..+|.++++.+.+
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~~~---yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~- 77 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLANLD---YDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPE- 77 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCCCC---CCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCC-
Confidence 45678999999998665322110000 00000000111 6789999998542 22345678899999999985
Q ss_pred hhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCC
Q 029437 100 KERFAESKKELDALLSDEALANVPFLVLGNKIDIP 134 (193)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~ 134 (193)
..++......+..+.... ...++.+++|+.+..
T Consensus 78 ~~s~~~~~~~l~~l~~~~--~~~~~~lVvN~~~~~ 110 (139)
T cd02038 78 PTSITDAYALIKKLAKQL--RVLNFRVVVNRAESP 110 (139)
T ss_pred hhHHHHHHHHHHHHHHhc--CCCCEEEEEeCCCCH
Confidence 434555555554443221 356778999999743
No 437
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.75 E-value=0.0001 Score=51.28 Aligned_cols=53 Identities=17% Similarity=0.103 Sum_probs=34.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhH
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIAR 78 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~ 78 (193)
..-+.|+|++|||||||++++...-. ..+.....+......+.+ |.+|.+.++
T Consensus 6 ~~ii~ivG~sgsGKTTLi~~li~~l~-----~~g~~vg~Ik~~~~~~~~-d~~g~Ds~~ 58 (173)
T PRK10751 6 IPLLAIAAWSGTGKTTLLKKLIPALC-----ARGIRPGLIKHTHHDMDV-DKPGKDSYE 58 (173)
T ss_pred ceEEEEECCCCChHHHHHHHHHHHHh-----hcCCeEEEEEEcCCCccc-CCCCcHHHH
Confidence 34689999999999999999885421 113334555554444443 777755443
No 438
>PRK07261 topology modulation protein; Provisional
Probab=97.74 E-value=2.6e-05 Score=54.38 Aligned_cols=22 Identities=36% Similarity=0.600 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 029437 22 KILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~~ 43 (193)
+|+|+|++|||||||...+...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999998643
No 439
>PF05729 NACHT: NACHT domain
Probab=97.74 E-value=0.00022 Score=48.95 Aligned_cols=21 Identities=33% Similarity=0.521 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 029437 23 ILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 23 i~v~G~~~~GKssl~~~l~~~ 43 (193)
++|.|++|+|||+++..+...
T Consensus 3 l~I~G~~G~GKStll~~~~~~ 23 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQ 23 (166)
T ss_pred EEEECCCCCChHHHHHHHHHH
Confidence 789999999999999988653
No 440
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.73 E-value=0.00019 Score=55.78 Aligned_cols=23 Identities=35% Similarity=0.403 Sum_probs=19.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLK 41 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~ 41 (193)
..-.++++|+.||||||++..+.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA 227 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLG 227 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34568999999999999998875
No 441
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.73 E-value=4.4e-05 Score=58.39 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCc
Q 029437 22 KILFLGLDNAGKTTLLHMLKDERL 45 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~~~~ 45 (193)
-++++||+|||||||++.+.+-+.
T Consensus 31 f~vllGPSGcGKSTlLr~IAGLe~ 54 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGLEE 54 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 488999999999999999987663
No 442
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.71 E-value=4.6e-05 Score=52.90 Aligned_cols=21 Identities=38% Similarity=0.553 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029437 22 KILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~ 42 (193)
||+++|+||+||||+++++..
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~ 21 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIE 21 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 443
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.71 E-value=0.00029 Score=56.66 Aligned_cols=24 Identities=33% Similarity=0.614 Sum_probs=21.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHh
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLK 41 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~ 41 (193)
++.-|++|+|++||||||+++.++
T Consensus 376 ~kGekVaIvG~nGsGKSTilr~Ll 399 (591)
T KOG0057|consen 376 PKGEKVAIVGSNGSGKSTILRLLL 399 (591)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHH
Confidence 456799999999999999999985
No 444
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.70 E-value=0.00021 Score=56.35 Aligned_cols=123 Identities=17% Similarity=0.092 Sum_probs=63.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC-cc-c-------cCC--------------CCCcceeEE----------EeCCEEE
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKDER-LV-Q-------HQP--------------TQYPTSEEL----------SIGKIKF 66 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~~~-~~-~-------~~~--------------t~~~~~~~~----------~~~~~~~ 66 (193)
...++++|++||||||++..+.... .. . ..+ ..+...... .-.+.++
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 3468999999999999998886321 00 0 000 001000000 1125678
Q ss_pred EEEEcCChhhh-H---hhHHhhcc-----cCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCC
Q 029437 67 KAFDLGGHQIA-R---RVWKDYYA-----KVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAA 137 (193)
Q Consensus 67 ~~~D~~G~~~~-~---~~~~~~~~-----~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~ 137 (193)
.++||+|.... . ..+...+. ...-+++|+|++... +.+......+ ... -+-=+++||.|.....
T Consensus 303 VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~~~~~f-~~~----~~~glIlTKLDEt~~~ 375 (432)
T PRK12724 303 ILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLTVLKAY-ESL----NYRRILLTKLDEADFL 375 (432)
T ss_pred EEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHHHHHHh-cCC----CCCEEEEEcccCCCCc
Confidence 99999995321 1 11122221 235788999987653 2233333333 211 1236889999986322
Q ss_pred -CHHHHHHhhCCC
Q 029437 138 -SEEELRYHLGLS 149 (193)
Q Consensus 138 -~~~~~~~~~~~~ 149 (193)
..-.+....+.+
T Consensus 376 G~il~i~~~~~lP 388 (432)
T PRK12724 376 GSFLELADTYSKS 388 (432)
T ss_pred cHHHHHHHHHCCC
Confidence 233344444433
No 445
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.69 E-value=0.00068 Score=48.96 Aligned_cols=46 Identities=24% Similarity=0.289 Sum_probs=30.0
Q ss_pred cccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCC
Q 029437 85 YAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIP 134 (193)
Q Consensus 85 ~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~ 134 (193)
..++|.++.|+|.+-. ++... +-...+..+.. -.++.+|+||.|..
T Consensus 153 ~~~vD~vivVvDpS~~-sl~ta-eri~~L~~elg--~k~i~~V~NKv~e~ 198 (255)
T COG3640 153 IEGVDLVIVVVDPSYK-SLRTA-ERIKELAEELG--IKRIFVVLNKVDEE 198 (255)
T ss_pred ccCCCEEEEEeCCcHH-HHHHH-HHHHHHHHHhC--CceEEEEEeeccch
Confidence 3589999999999655 23322 22333333211 37899999999964
No 446
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.67 E-value=3.6e-05 Score=51.76 Aligned_cols=20 Identities=35% Similarity=0.534 Sum_probs=18.4
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 029437 23 ILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 23 i~v~G~~~~GKssl~~~l~~ 42 (193)
|+++|+|||||||+++.+..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999874
No 447
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.66 E-value=3.7e-05 Score=55.89 Aligned_cols=25 Identities=28% Similarity=0.410 Sum_probs=21.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcc
Q 029437 22 KILFLGLDNAGKTTLLHMLKDERLV 46 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~~~~~ 46 (193)
-+.++|++|||||||++.+.+-..+
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~~p 55 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLEKP 55 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4899999999999999999876533
No 448
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.66 E-value=7.7e-05 Score=52.72 Aligned_cols=23 Identities=43% Similarity=0.465 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~ 43 (193)
-.++|+|++||||||+++.+.+.
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 47999999999999999998764
No 449
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.66 E-value=5.8e-05 Score=52.64 Aligned_cols=99 Identities=20% Similarity=0.162 Sum_probs=50.2
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCc----cccCCC--ccccCC
Q 029437 89 DAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSN----FTTGKG--KVNLAD 162 (193)
Q Consensus 89 d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~----~~~~~~--~~~~~~ 162 (193)
|++++|+|+.++.+-. ...+...+. ....+.|+++|+||+|+.+.....++.+.+.... +..... ...+.+
T Consensus 1 DvVl~VvDar~p~~~~--~~~i~~~~~-l~~~~kp~IlVlNK~DL~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (172)
T cd04178 1 DVILEVLDARDPLGCR--CPQVEEAVL-QAGGNKKLVLVLNKIDLVPKENVEKWLKYLRREFPTVAFKASTQSQKKNLGQ 77 (172)
T ss_pred CEEEEEEECCCCCCCC--CHHHHHHHH-hccCCCCEEEEEehhhcCCHHHHHHHHHHHHhhCCEEEEEecccccccchhh
Confidence 7899999998863211 112222211 1124689999999999974333333334332221 111000 001100
Q ss_pred CCC--cceEEEEeeeecCCChhhHHHhhhh
Q 029437 163 SNV--RPLEVFMCSIVRKMGYGDGFKWLSQ 190 (193)
Q Consensus 163 ~~~--~~~~~~~~Sa~~g~gv~el~~~i~~ 190 (193)
... .......+|+..+.|.+++++.+.+
T Consensus 78 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~ 107 (172)
T cd04178 78 KSVKVEAASADLLRSSVCFGADCLLKLLKN 107 (172)
T ss_pred cccccchhhhhhhhhccccCHHHHHHHHHH
Confidence 000 0122344677888888888777654
No 450
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.65 E-value=0.0014 Score=51.54 Aligned_cols=122 Identities=14% Similarity=0.081 Sum_probs=64.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCc---------c---ccCC-------------C-CCcceeEE-----------EeC
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKDERL---------V---QHQP-------------T-QYPTSEEL-----------SIG 62 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~~~~---------~---~~~~-------------t-~~~~~~~~-----------~~~ 62 (193)
...|+++|++|+||||.+..+...-. . ...+ . .+...... ...
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~ 253 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK 253 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence 45799999999999999987742110 0 0000 0 01100000 123
Q ss_pred CEEEEEEEcCChhhhHh----hHHhhcc---cCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC
Q 029437 63 KIKFKAFDLGGHQIARR----VWKDYYA---KVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY 135 (193)
Q Consensus 63 ~~~~~~~D~~G~~~~~~----~~~~~~~---~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~ 135 (193)
+..+.++||+|...... .....+. ..+-+++|+|++... ..+.+.+..+.. --+-=+++||.|...
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~--~~~~~~~~~~~~-----~~~~~~I~TKlDet~ 326 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT--SDVKEIFHQFSP-----FSYKTVIFTKLDETT 326 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH--HHHHHHHHHhcC-----CCCCEEEEEeccCCC
Confidence 57899999999533211 1122222 233688999997652 233344444311 113368899999863
Q ss_pred C-CCHHHHHHhhCC
Q 029437 136 A-ASEEELRYHLGL 148 (193)
Q Consensus 136 ~-~~~~~~~~~~~~ 148 (193)
. ...-.+....+.
T Consensus 327 ~~G~~l~~~~~~~~ 340 (388)
T PRK12723 327 CVGNLISLIYEMRK 340 (388)
T ss_pred cchHHHHHHHHHCC
Confidence 2 223334444443
No 451
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.64 E-value=5e-05 Score=44.54 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 029437 23 ILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 23 i~v~G~~~~GKssl~~~l~~~ 43 (193)
|++.|++|+||||+.+.+...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998764
No 452
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.64 E-value=6e-05 Score=54.34 Aligned_cols=22 Identities=36% Similarity=0.573 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 029437 21 AKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~ 42 (193)
--|+++|++|||||||++.+.+
T Consensus 31 E~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 31 EMVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred cEEEEECCCCCcHHHHHHHHhc
Confidence 3589999999999999999987
No 453
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.63 E-value=0.00098 Score=45.66 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~ 44 (193)
+.-.++|+|++|+|||||++.+.+..
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~ 49 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLL 49 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 33578999999999999999998754
No 454
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.63 E-value=6.9e-05 Score=41.64 Aligned_cols=45 Identities=24% Similarity=0.405 Sum_probs=26.2
Q ss_pred ccCCEEEEEEECCChhh--HHHHHHHHHHHHcCCCCCCCcEEEEEeCCC
Q 029437 86 AKVDAVVYLVDAYDKER--FAESKKELDALLSDEALANVPFLVLGNKID 132 (193)
Q Consensus 86 ~~~d~vl~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~pviiv~nK~D 132 (193)
+-.++|+|++|.+.... .++-...+.++-.. ..+.|+++|+||+|
T Consensus 12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~--F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKPL--FPNKPVIVVLNKID 58 (58)
T ss_dssp GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHH--TTTS-EEEEE--TT
T ss_pred hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHH--cCCCCEEEEEeccC
Confidence 45689999999987654 33444445554322 24899999999998
No 455
>PRK14530 adenylate kinase; Provisional
Probab=97.62 E-value=5.8e-05 Score=54.60 Aligned_cols=22 Identities=41% Similarity=0.530 Sum_probs=19.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHh
Q 029437 20 EAKILFLGLDNAGKTTLLHMLK 41 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~ 41 (193)
..+|+|+|+|||||||+.+.|.
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La 24 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLA 24 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3589999999999999999985
No 456
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.61 E-value=5.7e-05 Score=50.44 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKDER 44 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~~~ 44 (193)
.-.++|+|++|+|||||++.+.+..
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEEccCCCccccceeeecccc
Confidence 3479999999999999999998754
No 457
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.61 E-value=9.6e-05 Score=54.02 Aligned_cols=28 Identities=29% Similarity=0.265 Sum_probs=23.7
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhcC
Q 029437 16 LWQKEAKILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 16 ~~~~~~~i~v~G~~~~GKssl~~~l~~~ 43 (193)
......-|+|.|++|||||||++.+.+.
T Consensus 29 ~~~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 29 EPQRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3456789999999999999999988753
No 458
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.60 E-value=0.00019 Score=53.62 Aligned_cols=108 Identities=15% Similarity=0.073 Sum_probs=59.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc--------ccCC--------------CCCcceeEE--------------EeCCE
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDERLV--------QHQP--------------TQYPTSEEL--------------SIGKI 64 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~~~--------~~~~--------------t~~~~~~~~--------------~~~~~ 64 (193)
-+++++|++|+||||++..+...-.. ...+ ..+...... ...+.
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~ 155 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARV 155 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCCC
Confidence 68999999999999999877432100 0000 001000000 11246
Q ss_pred EEEEEEcCChhhhH----hhHHhhc--ccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC
Q 029437 65 KFKAFDLGGHQIAR----RVWKDYY--AKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY 135 (193)
Q Consensus 65 ~~~~~D~~G~~~~~----~~~~~~~--~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~ 135 (193)
.+.++||+|..... ..+...+ ...+.+++|+|++... +...+....+ .. -.+-=+++||.|...
T Consensus 156 D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~--~d~~~~~~~f-~~----~~~~~~I~TKlDet~ 225 (270)
T PRK06731 156 DYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNF-KD----IHIDGIVFTKFDETA 225 (270)
T ss_pred CEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH--HHHHHHHHHh-CC----CCCCEEEEEeecCCC
Confidence 89999999965321 1111222 2457789999986431 2233333333 11 123368899999874
No 459
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.59 E-value=0.00042 Score=53.50 Aligned_cols=84 Identities=20% Similarity=0.328 Sum_probs=49.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh--------------cCCccc-------------cCCCCCcc------------eeEE
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLK--------------DERLVQ-------------HQPTQYPT------------SEEL 59 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~--------------~~~~~~-------------~~~t~~~~------------~~~~ 59 (193)
+.--|+++|-.|+||||.+..+. .+.|+. ..|-.+.+ ...+
T Consensus 100 kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~f 179 (483)
T KOG0780|consen 100 KPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRF 179 (483)
T ss_pred CCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHH
Confidence 44569999999999999987762 222221 00100000 1112
Q ss_pred EeCCEEEEEEEcCChhh-hHhhHHhh-----cccCCEEEEEEECCChhh
Q 029437 60 SIGKIKFKAFDLGGHQI-ARRVWKDY-----YAKVDAVVYLVDAYDKER 102 (193)
Q Consensus 60 ~~~~~~~~~~D~~G~~~-~~~~~~~~-----~~~~d~vl~v~d~~~~~~ 102 (193)
.-++..+.+.||.|-.. ..+++.+. .-..|-+|+|+|++=.+.
T Consensus 180 Kke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQa 228 (483)
T KOG0780|consen 180 KKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQA 228 (483)
T ss_pred HhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHh
Confidence 23357899999999322 22333222 236799999999976543
No 460
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=97.59 E-value=0.00052 Score=52.55 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~ 43 (193)
.+|+|.|++||||||+++++...
T Consensus 145 ~nilI~G~tGSGKTTll~aL~~~ 167 (323)
T PRK13833 145 LNIVISGGTGSGKTTLANAVIAE 167 (323)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999998763
No 461
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.002 Score=52.02 Aligned_cols=118 Identities=17% Similarity=0.200 Sum_probs=65.7
Q ss_pred chHHHHHHHHHhhCC-CCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhh
Q 029437 2 FLLDWFYGVLASLGL-WQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRV 80 (193)
Q Consensus 2 ~~~~~~~~~~~~~~~-~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~ 80 (193)
+|++|+++=-...+. .+-..=|+++||||+|||-|.+++.+..-.+..-..+. +++ .++---|-.+.+.+
T Consensus 318 EiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGS-----EFd----Em~VGvGArRVRdL 388 (752)
T KOG0734|consen 318 EIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGS-----EFD----EMFVGVGARRVRDL 388 (752)
T ss_pred HHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEecccc-----chh----hhhhcccHHHHHHH
Confidence 578888876655554 45566799999999999999999987653322111111 111 11122355666777
Q ss_pred HHhhcccCCEEEEEEECC------ChhhHHHHHHHHHHHHcCC--CCCCCcEEEEE
Q 029437 81 WKDYYAKVDAVVYLVDAY------DKERFAESKKELDALLSDE--ALANVPFLVLG 128 (193)
Q Consensus 81 ~~~~~~~~d~vl~v~d~~------~~~~~~~~~~~~~~~~~~~--~~~~~pviiv~ 128 (193)
+...-.++-+|||+=-++ ++.......+.+++++-+. ..++-++|+++
T Consensus 389 F~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvig 444 (752)
T KOG0734|consen 389 FAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIG 444 (752)
T ss_pred HHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEe
Confidence 766655666666543221 1222334455555554332 12345555544
No 462
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.58 E-value=0.00081 Score=42.96 Aligned_cols=98 Identities=14% Similarity=0.017 Sum_probs=55.4
Q ss_pred EEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEe---CCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChh
Q 029437 25 FLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSI---GKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKE 101 (193)
Q Consensus 25 v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~---~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~ 101 (193)
+-+.+|+||||+...+...-.... +....-++. ....+.++|+|+..... ....+..+|.++++.+.+. .
T Consensus 5 ~~~kgg~gkt~~~~~la~~~~~~~----~~~~~l~d~d~~~~~D~IIiDtpp~~~~~--~~~~l~~aD~vlvvv~~~~-~ 77 (106)
T cd03111 5 IGAKGGVGATTLAANLAVALAKEA----GRRVLLVDLDLQFGDDYVVVDLGRSLDEV--SLAALDQADRVFLVTQQDL-P 77 (106)
T ss_pred ECCCCCCcHHHHHHHHHHHHHhcC----CCcEEEEECCCCCCCCEEEEeCCCCcCHH--HHHHHHHcCeEEEEecCCh-H
Confidence 346788999998766632211100 000000000 01178999999865432 2345678899999998744 4
Q ss_pred hHHHHHHHHHHHHcCCCCC-CCcEEEEEeC
Q 029437 102 RFAESKKELDALLSDEALA-NVPFLVLGNK 130 (193)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~-~~pviiv~nK 130 (193)
++......+..+... ..+ ...+.+++|+
T Consensus 78 s~~~~~~~~~~l~~~-~~~~~~~~~lVvNr 106 (106)
T cd03111 78 SIRNAKRLLELLRVL-DYSLPAKIELVLNR 106 (106)
T ss_pred HHHHHHHHHHHHHHc-CCCCcCceEEEecC
Confidence 456666665555332 222 4566777775
No 463
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.58 E-value=7.8e-05 Score=52.28 Aligned_cols=38 Identities=26% Similarity=0.392 Sum_probs=22.9
Q ss_pred HHHHHHHHHhhCCCCCccEEEEEcCCCCCHHHHHHHHhc
Q 029437 4 LDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~ 42 (193)
++.+..++. .......-.++|.|++|+|||+|++++..
T Consensus 9 ~~~l~~~l~-~~~~~~~~~~ll~G~~G~GKT~ll~~~~~ 46 (185)
T PF13191_consen 9 IERLRDLLD-AAQSGSPRNLLLTGESGSGKTSLLRALLD 46 (185)
T ss_dssp HHHHHHTTG-GTSS-----EEE-B-TTSSHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHcCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 344555555 44455567899999999999999998754
No 464
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.57 E-value=0.00057 Score=43.32 Aligned_cols=81 Identities=16% Similarity=0.048 Sum_probs=48.2
Q ss_pred EEEEc-CCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeC-CEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCCh
Q 029437 23 ILFLG-LDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIG-KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDK 100 (193)
Q Consensus 23 i~v~G-~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~ 100 (193)
|.+.| .+|+||||+...+...-... +....-++.+ ...+.++|+|+..... ....+..+|.++++++.+ .
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~-----~~~vl~~d~d~~~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~~~-~ 73 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARR-----GKRVLLIDLDPQYDYIIIDTPPSLGLL--TRNALAAADLVLIPVQPS-P 73 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhC-----CCcEEEEeCCCCCCEEEEeCcCCCCHH--HHHHHHHCCEEEEeccCC-H
Confidence 55666 67999999987664321110 1111111111 1678999999875332 225667789999999884 4
Q ss_pred hhHHHHHHHHH
Q 029437 101 ERFAESKKELD 111 (193)
Q Consensus 101 ~~~~~~~~~~~ 111 (193)
.++....+.+.
T Consensus 74 ~s~~~~~~~~~ 84 (104)
T cd02042 74 LDLDGLEKLLE 84 (104)
T ss_pred HHHHHHHHHHH
Confidence 45555555544
No 465
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.57 E-value=9.1e-05 Score=57.21 Aligned_cols=93 Identities=15% Similarity=0.210 Sum_probs=56.3
Q ss_pred HHHHHHHHHhhCCCCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcce--eEEEeCCEEEEEEEcCChhhh--Hh
Q 029437 4 LDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTS--EELSIGKIKFKAFDLGGHQIA--RR 79 (193)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~D~~G~~~~--~~ 79 (193)
|.-|+++... -..++.+.++++|-||+||||++|.|-..+....-|..+.+. ..+.. ..++=++|+||..-- ..
T Consensus 292 I~llRQf~kL-h~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYItL-mkrIfLIDcPGvVyps~ds 369 (572)
T KOG2423|consen 292 IQLLRQFAKL-HSDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYITL-MKRIFLIDCPGVVYPSSDS 369 (572)
T ss_pred HHHHHHHHhh-ccCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHHH-HhceeEecCCCccCCCCCc
Confidence 3444444422 225788999999999999999999998887666555444321 11111 235678899995321 12
Q ss_pred hHHhhcccCCEEEEEEECCChh
Q 029437 80 VWKDYYAKVDAVVYLVDAYDKE 101 (193)
Q Consensus 80 ~~~~~~~~~d~vl~v~d~~~~~ 101 (193)
.....+ -+|+-|-++.+|+
T Consensus 370 et~ivL---kGvVRVenv~~pe 388 (572)
T KOG2423|consen 370 ETDIVL---KGVVRVENVKNPE 388 (572)
T ss_pred hHHHHh---hceeeeeecCCHH
Confidence 222222 3566666776664
No 466
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.56 E-value=0.00085 Score=54.10 Aligned_cols=37 Identities=22% Similarity=0.356 Sum_probs=25.4
Q ss_pred HHHHHHHHhhCCCCCccEEEEEcCCCCCHHHHHHHHhc
Q 029437 5 DWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~ 42 (193)
.|++.+.+..+..... -++++||+||||||-++-++.
T Consensus 96 ~WL~~~~~~~~~l~~~-iLLltGPsGcGKSTtvkvLsk 132 (634)
T KOG1970|consen 96 QWLKQVAEFTPKLGSR-ILLLTGPSGCGKSTTVKVLSK 132 (634)
T ss_pred HHHHHHHHhccCCCce-EEEEeCCCCCCchhHHHHHHH
Confidence 4555444444433333 378999999999999998864
No 467
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.56 E-value=8e-05 Score=53.61 Aligned_cols=26 Identities=31% Similarity=0.341 Sum_probs=22.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~ 43 (193)
.+...|+|.|++|||||||++.+...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 46678999999999999999998753
No 468
>PRK08233 hypothetical protein; Provisional
Probab=97.55 E-value=8.2e-05 Score=52.16 Aligned_cols=25 Identities=32% Similarity=0.384 Sum_probs=21.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcC
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~ 43 (193)
+..-|+|.|++||||||+.+++...
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhh
Confidence 3467999999999999999999753
No 469
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.55 E-value=0.00053 Score=52.04 Aligned_cols=126 Identities=20% Similarity=0.216 Sum_probs=68.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhc--------------CCccc-----------------cCCCCCcceeEEEe----
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKD--------------ERLVQ-----------------HQPTQYPTSEELSI---- 61 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~--------------~~~~~-----------------~~~t~~~~~~~~~~---- 61 (193)
..+...|+++|-.|+||||-+-.+.. +.|+. .....+.....+-+
T Consensus 136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~ 215 (340)
T COG0552 136 EKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQ 215 (340)
T ss_pred CCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHH
Confidence 34578899999999999999977731 11210 00001111111211
Q ss_pred ----CCEEEEEEEcCChhh-----------hHhhHHhh-cccCCEEEEEEECCCh-hhHHHHHHHHHHHHcCCCCCCCcE
Q 029437 62 ----GKIKFKAFDLGGHQI-----------ARRVWKDY-YAKVDAVVYLVDAYDK-ERFAESKKELDALLSDEALANVPF 124 (193)
Q Consensus 62 ----~~~~~~~~D~~G~~~-----------~~~~~~~~-~~~~d~vl~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~pv 124 (193)
.++.+.++||+|--. ........ ....|-++++.|+.-. +.+++...+.... . --
T Consensus 216 ~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav-~-------l~ 287 (340)
T COG0552 216 AAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAV-G-------LD 287 (340)
T ss_pred HHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhc-C-------Cc
Confidence 257899999999211 11111111 1234568999999765 3455554433332 1 11
Q ss_pred EEEEeCCCCC-CCCCHHHHHHhhCCCc
Q 029437 125 LVLGNKIDIP-YAASEEELRYHLGLSN 150 (193)
Q Consensus 125 iiv~nK~D~~-~~~~~~~~~~~~~~~~ 150 (193)
=+++||.|-. ..-..-.+..+++.+-
T Consensus 288 GiIlTKlDgtAKGG~il~I~~~l~~PI 314 (340)
T COG0552 288 GIILTKLDGTAKGGIILSIAYELGIPI 314 (340)
T ss_pred eEEEEecccCCCcceeeeHHHHhCCCE
Confidence 4788999965 2223334555555444
No 470
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.55 E-value=0.00011 Score=54.18 Aligned_cols=24 Identities=33% Similarity=0.383 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~~ 43 (193)
.--+.|+||.|||||||++++.+-
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 345889999999999999999763
No 471
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.54 E-value=4.8e-05 Score=52.51 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=17.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 029437 22 KILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~~ 43 (193)
||+|+|.+|+|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 6999999999999999999765
No 472
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=97.54 E-value=0.00085 Score=53.00 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=21.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcC
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~ 43 (193)
..-.++|.|++|+|||++++.+...
T Consensus 54 ~~~~~lI~G~~GtGKT~l~~~v~~~ 78 (394)
T PRK00411 54 RPLNVLIYGPPGTGKTTTVKKVFEE 78 (394)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3456899999999999999998753
No 473
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.54 E-value=0.00014 Score=50.79 Aligned_cols=22 Identities=36% Similarity=0.658 Sum_probs=19.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q 029437 23 ILFLGLDNAGKTTLLHMLKDER 44 (193)
Q Consensus 23 i~v~G~~~~GKssl~~~l~~~~ 44 (193)
+.++||+|||||||++-+...+
T Consensus 31 ~fl~GpSGAGKSTllkLi~~~e 52 (223)
T COG2884 31 VFLTGPSGAGKSTLLKLIYGEE 52 (223)
T ss_pred EEEECCCCCCHHHHHHHHHhhh
Confidence 6889999999999999998765
No 474
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=97.53 E-value=0.00011 Score=50.60 Aligned_cols=51 Identities=27% Similarity=0.303 Sum_probs=34.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhH
Q 029437 22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIAR 78 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~ 78 (193)
.|.|+|++|+|||||+.++...- ...+.....+......+.+ |.+|...++
T Consensus 3 vi~i~G~~gsGKTTli~~L~~~l-----~~~g~~V~~iK~~~~~~~~-d~~g~Ds~~ 53 (159)
T cd03116 3 VIGFVGYSGSGKTTLLEKLIPAL-----SARGLRVAVIKHDHHDFDI-DTPGKDSYR 53 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-----HHcCCcEEEEEecCCcccc-cCccchHHH
Confidence 58999999999999999998532 1223445566665555444 777765544
No 475
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.52 E-value=0.0011 Score=49.60 Aligned_cols=22 Identities=41% Similarity=0.383 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 029437 22 KILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~~ 43 (193)
-|+|.|++|+||||+++++...
T Consensus 82 lilisG~tGSGKTT~l~all~~ 103 (264)
T cd01129 82 IILVTGPTGSGKTTTLYSALSE 103 (264)
T ss_pred EEEEECCCCCcHHHHHHHHHhh
Confidence 4999999999999999988654
No 476
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.52 E-value=7e-05 Score=50.13 Aligned_cols=25 Identities=32% Similarity=0.510 Sum_probs=22.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhc
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~ 42 (193)
+...+|+|+|.||+||||+..++..
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHH
Confidence 4457999999999999999999863
No 477
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.51 E-value=8.8e-05 Score=53.33 Aligned_cols=26 Identities=27% Similarity=0.250 Sum_probs=22.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~ 43 (193)
+....|+|+|++|||||||++.+.+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 45578999999999999999999753
No 478
>PRK06217 hypothetical protein; Validated
Probab=97.51 E-value=8.6e-05 Score=52.32 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~ 43 (193)
.+|+|+|.+||||||+..+|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999998644
No 479
>PF00519 PPV_E1_C: Papillomavirus helicase; InterPro: IPR001177 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species. The helicase E1 protein is an ATP-dependent DNA helicase required for initiation of viral DNA replication []. It forms a complex with the viral E2 protein, which is a site-specific DNA-binding transcriptional activator. The E1-E2 complex binds to the replication origin which contains binding sites for both proteins []. The E1 protein is a 70 kDa polypeptide with a central DNA-binding domain and a C-terminal ATPase/helicase domain. It binds specific 18 bp DNA sequences at the origin of replication, melts the DNA duplex and functions as a 3' to 5' helicase []. In addition to E2 it also interacts with DNA polymerase alpha and replication protein A to effect DNA replication. The DNA-binding domain forms a five-stranded antiparallel beta sheet bordered by four loosely packed alpha helices on one side and two tightly packed helices on the other []. Two structural modules within this domain, an extended loop and a helix, contain conserved residues and are critical for DNA binding. In solution E1 is a monomer, but binds DNA as a dimer. Recruitment of more E1 subunits to the complex leads to melting of the origin and ultimately to the formation of an E1 hexamer with helicase activity []. The entry represents the C-terminal region of E1, containing both the DNA-binding and ATPase/helical domains.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1TUE_K 1R9W_A 2V9P_B 2GXA_I 1KSX_J 1KSY_A 1F08_B.
Probab=97.50 E-value=0.0002 Score=55.49 Aligned_cols=40 Identities=15% Similarity=0.199 Sum_probs=34.6
Q ss_pred chHHHHHHHHHhhCCCCCccEEEEEcCCCCCHHHHHHHHh
Q 029437 2 FLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLK 41 (193)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~ 41 (193)
+++.|+..+...+++..+.-.|+|.|||++|||.+...|.
T Consensus 244 ~~i~Fl~~lk~~Lkg~PKKnClvi~GPPdTGKS~F~~SLi 283 (432)
T PF00519_consen 244 EFISFLIALKQFLKGIPKKNCLVIYGPPDTGKSMFCMSLI 283 (432)
T ss_dssp -HHHHHHHHHHHHHTBTTSSEEEEESSCCCSHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhCCCcccEEEEECCCCCchhHHHHHHH
Confidence 5688888888888888888899999999999999998775
No 480
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.50 E-value=0.00021 Score=51.63 Aligned_cols=26 Identities=27% Similarity=0.508 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~ 44 (193)
..-.++++|++|||||||++.+.+..
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44579999999999999999998754
No 481
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.50 E-value=0.00021 Score=51.73 Aligned_cols=26 Identities=31% Similarity=0.456 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~ 44 (193)
..-.++|+|++|||||||++.+.+..
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 34578999999999999999998754
No 482
>PRK03839 putative kinase; Provisional
Probab=97.49 E-value=9.6e-05 Score=51.90 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 029437 22 KILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~~ 43 (193)
+|+|+|+|||||||+.+++...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998654
No 483
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.49 E-value=0.00012 Score=48.50 Aligned_cols=24 Identities=42% Similarity=0.506 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDER 44 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~ 44 (193)
-.++++|++|+|||+++..+...-
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~ 26 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAREL 26 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhcc
Confidence 479999999999999999997654
No 484
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.49 E-value=0.00039 Score=50.51 Aligned_cols=36 Identities=19% Similarity=0.211 Sum_probs=26.7
Q ss_pred HHHHHHHHHhhCCCCCccEEEEEcCCCCCHHHHHHHHhcC
Q 029437 4 LDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~ 43 (193)
+..++.|.. ....-.+++.|++|+|||+++..+...
T Consensus 26 ~~~l~~~~~----~~~~~~lll~G~~G~GKT~la~~~~~~ 61 (226)
T TIGR03420 26 LAALRQLAA----GKGDRFLYLWGESGSGKSHLLQAACAA 61 (226)
T ss_pred HHHHHHHHh----cCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 455555542 234457999999999999999998753
No 485
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.48 E-value=0.00024 Score=52.05 Aligned_cols=26 Identities=23% Similarity=0.423 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~ 44 (193)
..-.++|+|++|||||||++.+.+..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 25 RGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34468999999999999999998754
No 486
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.48 E-value=0.00016 Score=54.29 Aligned_cols=51 Identities=24% Similarity=0.292 Sum_probs=33.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhH
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIAR 78 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~ 78 (193)
.-.++|+|.+|+|||||++.+.+-+ .++.+.+..++..+.-.+-.+....+
T Consensus 32 GeI~GIIG~SGAGKSTLiR~iN~Le--------~PtsG~v~v~G~di~~l~~~~Lr~~R 82 (339)
T COG1135 32 GEIFGIIGYSGAGKSTLLRLINLLE--------RPTSGSVFVDGQDLTALSEAELRQLR 82 (339)
T ss_pred CcEEEEEcCCCCcHHHHHHHHhccC--------CCCCceEEEcCEecccCChHHHHHHH
Confidence 3468999999999999999988765 33445555555444444444443333
No 487
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.48 E-value=9.4e-05 Score=48.84 Aligned_cols=21 Identities=43% Similarity=0.509 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 029437 23 ILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 23 i~v~G~~~~GKssl~~~l~~~ 43 (193)
|++.|+||+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999998864
No 488
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.48 E-value=0.0001 Score=52.05 Aligned_cols=23 Identities=30% Similarity=0.559 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 029437 22 KILFLGLDNAGKTTLLHMLKDER 44 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~~~ 44 (193)
.++|+|++|||||||++.+....
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 68999999999999999997653
No 489
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.48 E-value=0.00026 Score=50.13 Aligned_cols=26 Identities=35% Similarity=0.471 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~ 44 (193)
..-.++|+|++|||||||++.+.+..
T Consensus 17 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 17 RGEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34469999999999999999998754
No 490
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.47 E-value=9.4e-05 Score=51.86 Aligned_cols=22 Identities=36% Similarity=0.508 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 029437 22 KILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~~ 43 (193)
.++|+|++||||||+++.+...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998654
No 491
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=97.47 E-value=0.00016 Score=55.64 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=21.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcC
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~ 43 (193)
...+|+|+|++||||||+++++...
T Consensus 159 ~~~nili~G~tgSGKTTll~aL~~~ 183 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALRE 183 (332)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHhh
Confidence 3468999999999999999998753
No 492
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.46 E-value=0.00026 Score=51.00 Aligned_cols=26 Identities=35% Similarity=0.540 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~ 44 (193)
..-.++|+|++|||||||++.+.+..
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34568999999999999999998754
No 493
>PLN03025 replication factor C subunit; Provisional
Probab=97.46 E-value=0.0027 Score=48.77 Aligned_cols=37 Identities=19% Similarity=0.252 Sum_probs=26.5
Q ss_pred hHHHHHHHHHhhCCCCCccEEEEEcCCCCCHHHHHHHHhcC
Q 029437 3 LLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~ 43 (193)
++..++.+... ....++++.||+|+||||++..+...
T Consensus 21 ~~~~L~~~~~~----~~~~~lll~Gp~G~GKTtla~~la~~ 57 (319)
T PLN03025 21 AVSRLQVIARD----GNMPNLILSGPPGTGKTTSILALAHE 57 (319)
T ss_pred HHHHHHHHHhc----CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 35566666532 22236899999999999999988654
No 494
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.45 E-value=0.00013 Score=51.90 Aligned_cols=25 Identities=40% Similarity=0.543 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKDER 44 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~~~ 44 (193)
.--.+|+||.|+|||||++.+++.-
T Consensus 27 Gev~ailGPNGAGKSTlLk~LsGel 51 (259)
T COG4559 27 GEVLAILGPNGAGKSTLLKALSGEL 51 (259)
T ss_pred CcEEEEECCCCccHHHHHHHhhCcc
Confidence 3458999999999999999998754
No 495
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.45 E-value=0.0001 Score=52.62 Aligned_cols=21 Identities=29% Similarity=0.359 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 029437 23 ILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 23 i~v~G~~~~GKssl~~~l~~~ 43 (193)
|+|+|++|||||||++.+.+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998654
No 496
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.45 E-value=0.00018 Score=50.88 Aligned_cols=24 Identities=21% Similarity=0.441 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDER 44 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~ 44 (193)
.-|+|+||+|||||||++++....
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhcC
Confidence 458999999999999999997653
No 497
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.45 E-value=0.00082 Score=52.75 Aligned_cols=23 Identities=39% Similarity=0.540 Sum_probs=19.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHH
Q 029437 18 QKEAKILFLGLDNAGKTTLLHML 40 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l 40 (193)
+.+..|+++|-.||||||..-.|
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KL 120 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKL 120 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHH
Confidence 34567999999999999998776
No 498
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.45 E-value=0.00011 Score=48.24 Aligned_cols=21 Identities=33% Similarity=0.484 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 029437 23 ILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 23 i~v~G~~~~GKssl~~~l~~~ 43 (193)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998754
No 499
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=97.44 E-value=0.0011 Score=50.74 Aligned_cols=24 Identities=38% Similarity=0.595 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~~ 43 (193)
..+|+|+|++||||||+++++...
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~ 171 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINE 171 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999999999864
No 500
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.44 E-value=0.0003 Score=50.75 Aligned_cols=26 Identities=31% Similarity=0.448 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~ 44 (193)
..-.++|+|++|||||||++.+.+..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 25 PGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34469999999999999999998753
Done!