Query 029437
Match_columns 193
No_of_seqs 126 out of 1817
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 21:14:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029437.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029437hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1f6b_A SAR1; gtpases, N-termin 100.0 8.1E-37 2.8E-41 217.3 20.3 192 2-193 3-198 (198)
2 1m2o_B GTP-binding protein SAR 100.0 2.8E-35 9.5E-40 208.1 19.6 186 2-192 5-190 (190)
3 1r8s_A ADP-ribosylation factor 100.0 9.9E-34 3.4E-38 195.1 19.5 160 21-192 1-160 (164)
4 1fzq_A ADP-ribosylation factor 100.0 1.3E-33 4.4E-38 198.0 19.9 163 18-192 14-176 (181)
5 1ksh_A ARF-like protein 2; sma 100.0 2.1E-33 7.1E-38 197.5 19.5 163 18-192 16-178 (186)
6 1zj6_A ADP-ribosylation factor 100.0 2.4E-33 8.4E-38 197.4 19.8 173 6-192 4-176 (187)
7 1upt_A ARL1, ADP-ribosylation 100.0 2.6E-33 8.9E-38 194.2 19.4 164 17-192 4-167 (171)
8 1moz_A ARL1, ADP-ribosylation 100.0 2.1E-33 7.1E-38 196.9 18.7 176 5-192 3-178 (183)
9 2b6h_A ADP-ribosylation factor 100.0 1.9E-33 6.6E-38 198.9 17.6 165 17-193 26-190 (192)
10 2h17_A ADP-ribosylation factor 100.0 3.4E-33 1.2E-37 195.8 17.9 167 14-192 15-181 (181)
11 2x77_A ADP-ribosylation factor 100.0 6.8E-34 2.3E-38 200.5 14.3 163 18-192 20-182 (189)
12 1zd9_A ADP-ribosylation factor 100.0 1.2E-32 4.3E-37 194.0 20.1 165 17-193 19-184 (188)
13 4dkx_A RAS-related protein RAB 100.0 3.9E-33 1.3E-37 200.3 14.1 158 17-192 10-174 (216)
14 2h57_A ADP-ribosylation factor 100.0 5.2E-32 1.8E-36 191.0 18.5 166 16-193 17-186 (190)
15 4bas_A ADP-ribosylation factor 100.0 3E-32 1E-36 193.3 16.7 165 17-192 14-187 (199)
16 3o47_A ADP-ribosylation factor 100.0 1.5E-31 5E-36 203.5 16.1 163 18-192 163-325 (329)
17 3lvq_E ARF-GAP with SH3 domain 100.0 8.3E-31 2.8E-35 209.7 19.2 165 17-193 319-483 (497)
18 3q72_A GTP-binding protein RAD 100.0 1.1E-30 3.8E-35 180.1 14.9 156 20-192 2-162 (166)
19 2fh5_B SR-beta, signal recogni 100.0 5.7E-30 2E-34 183.8 18.8 177 16-192 3-214 (214)
20 2nzj_A GTP-binding protein REM 100.0 7.4E-30 2.5E-34 177.4 17.1 158 18-192 2-167 (175)
21 1c1y_A RAS-related protein RAP 100.0 2.4E-30 8.2E-35 178.4 12.8 158 19-192 2-165 (167)
22 3ihw_A Centg3; RAS, centaurin, 100.0 1.8E-29 6.1E-34 177.4 16.8 156 16-192 16-178 (184)
23 1r2q_A RAS-related protein RAB 100.0 1.4E-29 4.8E-34 175.0 15.8 158 17-192 3-167 (170)
24 1u8z_A RAS-related protein RAL 100.0 1.5E-29 5E-34 174.5 14.8 158 18-192 2-165 (168)
25 3t1o_A Gliding protein MGLA; G 100.0 6.8E-30 2.3E-34 180.8 13.4 158 17-192 11-190 (198)
26 2hup_A RAS-related protein RAB 100.0 2E-29 6.9E-34 179.4 15.7 158 17-192 26-191 (201)
27 3bc1_A RAS-related protein RAB 100.0 1.8E-29 6.2E-34 178.1 15.3 160 16-192 7-183 (195)
28 2fg5_A RAB-22B, RAS-related pr 100.0 3.7E-29 1.3E-33 176.8 16.6 158 17-192 20-184 (192)
29 2efe_B Small GTP-binding prote 100.0 5.7E-29 1.9E-33 173.8 17.3 160 15-192 7-173 (181)
30 1kao_A RAP2A; GTP-binding prot 100.0 1E-29 3.6E-34 175.0 13.3 157 19-192 2-164 (167)
31 1wms_A RAB-9, RAB9, RAS-relate 100.0 2.1E-29 7.3E-34 175.4 15.0 160 17-192 4-172 (177)
32 3kkq_A RAS-related protein M-R 100.0 9.2E-30 3.1E-34 178.3 13.2 159 17-192 15-180 (183)
33 4dsu_A GTPase KRAS, isoform 2B 100.0 1.8E-29 6.1E-34 177.5 13.9 159 18-192 2-164 (189)
34 1ek0_A Protein (GTP-binding pr 100.0 2.5E-29 8.4E-34 173.7 14.3 156 19-192 2-167 (170)
35 3q85_A GTP-binding protein REM 100.0 2.7E-29 9.3E-34 173.6 14.4 156 20-192 2-165 (169)
36 2bme_A RAB4A, RAS-related prot 100.0 6E-29 2.1E-33 174.5 16.1 158 17-192 7-171 (186)
37 1z06_A RAS-related protein RAB 100.0 7.5E-29 2.6E-33 174.7 16.6 159 17-192 17-186 (189)
38 2hxs_A RAB-26, RAS-related pro 100.0 2.4E-29 8.1E-34 175.3 13.9 159 17-192 3-171 (178)
39 1z0j_A RAB-22, RAS-related pro 100.0 4.4E-29 1.5E-33 172.6 15.1 158 17-192 3-167 (170)
40 2a9k_A RAS-related protein RAL 100.0 4E-29 1.4E-33 175.3 15.1 160 16-192 14-179 (187)
41 3t5g_A GTP-binding protein RHE 100.0 1.7E-29 5.6E-34 176.7 12.9 158 18-192 4-167 (181)
42 3oes_A GTPase rhebl1; small GT 100.0 9.3E-30 3.2E-34 181.1 11.8 158 18-192 22-185 (201)
43 1x3s_A RAS-related protein RAB 100.0 5.8E-29 2E-33 175.8 15.6 158 18-192 13-176 (195)
44 2fn4_A P23, RAS-related protei 100.0 4E-29 1.4E-33 174.5 14.5 159 17-192 6-170 (181)
45 2g6b_A RAS-related protein RAB 100.0 2.8E-29 9.7E-34 175.2 13.5 159 16-192 6-172 (180)
46 2iwr_A Centaurin gamma 1; ANK 100.0 8.2E-29 2.8E-33 172.7 15.7 155 17-192 4-167 (178)
47 3reg_A RHO-like small GTPase; 100.0 1.9E-29 6.6E-34 178.4 12.4 162 14-192 17-186 (194)
48 2ew1_A RAS-related protein RAB 100.0 6.6E-29 2.2E-33 176.8 15.2 158 17-192 23-187 (201)
49 2bov_A RAla, RAS-related prote 100.0 1E-28 3.6E-33 175.9 16.2 159 17-192 11-175 (206)
50 3tw8_B RAS-related protein RAB 100.0 3.4E-29 1.1E-33 174.8 13.3 157 17-192 6-169 (181)
51 1z2a_A RAS-related protein RAB 100.0 3E-29 1E-33 173.1 12.7 156 18-192 3-165 (168)
52 1z08_A RAS-related protein RAB 100.0 4.1E-29 1.4E-33 172.8 13.3 158 17-192 3-167 (170)
53 3cbq_A GTP-binding protein REM 100.0 1.1E-28 3.8E-33 174.9 15.7 159 17-192 20-186 (195)
54 2f7s_A C25KG, RAS-related prot 100.0 3.9E-29 1.3E-33 179.8 13.5 159 17-192 22-197 (217)
55 2y8e_A RAB-protein 6, GH09086P 100.0 7.2E-29 2.4E-33 172.9 14.4 158 17-192 11-175 (179)
56 2o52_A RAS-related protein RAB 100.0 5.4E-29 1.8E-33 177.1 13.9 158 17-192 22-186 (200)
57 3tkl_A RAS-related protein RAB 100.0 1.3E-28 4.3E-33 174.2 15.6 158 17-192 13-177 (196)
58 3dz8_A RAS-related protein RAB 100.0 1.9E-29 6.5E-34 178.1 11.3 158 17-192 20-184 (191)
59 3clv_A RAB5 protein, putative; 100.0 2.3E-28 7.9E-33 173.7 17.0 155 18-192 5-202 (208)
60 1z0f_A RAB14, member RAS oncog 100.0 9.8E-29 3.4E-33 172.2 14.6 158 17-192 12-176 (179)
61 1zbd_A Rabphilin-3A; G protein 100.0 2.5E-28 8.4E-33 173.8 16.8 158 17-192 5-169 (203)
62 2fu5_C RAS-related protein RAB 100.0 2E-29 6.9E-34 176.6 11.0 158 17-192 5-169 (183)
63 1ky3_A GTP-binding protein YPT 100.0 1.5E-28 5.1E-33 171.7 15.1 160 17-192 5-176 (182)
64 2oil_A CATX-8, RAS-related pro 100.0 1.9E-28 6.4E-33 173.1 15.5 158 17-192 22-186 (193)
65 2a5j_A RAS-related protein RAB 100.0 1.3E-28 4.4E-33 173.8 14.6 158 17-192 18-182 (191)
66 2yc2_C IFT27, small RAB-relate 100.0 4.4E-29 1.5E-33 178.1 12.3 158 18-192 18-190 (208)
67 2il1_A RAB12; G-protein, GDP, 100.0 9.6E-29 3.3E-33 174.7 13.2 159 17-192 23-188 (192)
68 2ce2_X GTPase HRAS; signaling 100.0 1.4E-28 4.7E-33 169.1 13.6 157 19-192 2-163 (166)
69 2atv_A RERG, RAS-like estrogen 100.0 1.3E-28 4.3E-33 174.5 13.7 158 17-192 25-189 (196)
70 3q3j_B RHO-related GTP-binding 100.0 5.3E-29 1.8E-33 178.9 11.7 157 17-192 24-201 (214)
71 4djt_A GTP-binding nuclear pro 100.0 1E-28 3.5E-33 177.7 13.3 162 13-192 4-173 (218)
72 2gf0_A GTP-binding protein DI- 100.0 1.7E-28 6E-33 173.9 14.2 162 14-192 2-169 (199)
73 2gf9_A RAS-related protein RAB 100.0 1.8E-28 6.3E-33 172.7 14.0 158 17-192 19-183 (189)
74 1g16_A RAS-related protein SEC 100.0 9.2E-29 3.2E-33 170.9 12.2 156 19-192 2-163 (170)
75 2erx_A GTP-binding protein DI- 100.0 8E-29 2.7E-33 171.5 11.7 158 19-193 2-166 (172)
76 1vg8_A RAS-related protein RAB 100.0 8.3E-29 2.9E-33 176.6 12.2 160 17-192 5-173 (207)
77 2bcg_Y Protein YP2, GTP-bindin 100.0 3.3E-28 1.1E-32 173.6 15.1 158 17-192 5-169 (206)
78 3c5c_A RAS-like protein 12; GD 100.0 5.4E-29 1.9E-33 175.3 10.6 159 16-192 17-184 (187)
79 2p5s_A RAS and EF-hand domain 100.0 2.3E-28 7.8E-33 173.6 13.9 158 17-192 25-195 (199)
80 2g3y_A GTP-binding protein GEM 100.0 5.3E-28 1.8E-32 173.1 15.3 158 18-192 35-201 (211)
81 3cpj_B GTP-binding protein YPT 100.0 2.9E-28 9.9E-33 176.1 14.0 158 17-192 10-174 (223)
82 3con_A GTPase NRAS; structural 100.0 5.1E-28 1.8E-32 170.4 14.7 159 17-192 18-181 (190)
83 2gco_A H9, RHO-related GTP-bin 100.0 6.4E-28 2.2E-32 171.6 15.2 172 18-192 23-198 (201)
84 4gzl_A RAS-related C3 botulinu 100.0 6.7E-29 2.3E-33 177.1 9.8 173 16-192 26-203 (204)
85 3gj0_A GTP-binding nuclear pro 100.0 5.3E-29 1.8E-33 179.6 9.0 158 16-192 11-173 (221)
86 3cph_A RAS-related protein SEC 100.0 6E-28 2.1E-32 172.9 14.3 158 17-192 17-180 (213)
87 2atx_A Small GTP binding prote 100.0 6.1E-28 2.1E-32 170.6 14.0 171 18-192 16-191 (194)
88 1mh1_A RAC1; GTP-binding, GTPa 100.0 2.4E-28 8E-33 171.3 11.5 171 18-192 3-178 (186)
89 2fv8_A H6, RHO-related GTP-bin 100.0 9.6E-28 3.3E-32 171.4 13.6 171 18-192 23-198 (207)
90 3bwd_D RAC-like GTP-binding pr 100.0 4.9E-29 1.7E-33 174.3 6.7 157 18-192 6-179 (182)
91 2q3h_A RAS homolog gene family 100.0 5.6E-28 1.9E-32 171.7 12.3 172 17-192 17-193 (201)
92 2j1l_A RHO-related GTP-binding 100.0 8.8E-28 3E-32 172.5 13.3 171 18-192 32-207 (214)
93 2lkc_A Translation initiation 100.0 1.3E-27 4.3E-32 166.6 13.7 163 16-192 4-169 (178)
94 1m7b_A RND3/RHOE small GTP-bin 100.0 2.3E-28 8E-33 171.5 10.0 171 17-192 4-181 (184)
95 2j0v_A RAC-like GTP-binding pr 100.0 1.1E-28 3.6E-33 176.9 7.8 157 18-192 7-178 (212)
96 2cjw_A GTP-binding protein GEM 99.9 6.9E-27 2.4E-31 165.2 15.1 158 18-192 4-170 (192)
97 1gwn_A RHO-related GTP-binding 99.9 7.2E-28 2.5E-32 171.9 9.7 171 17-192 25-202 (205)
98 3l0i_B RAS-related protein RAB 99.9 1.3E-28 4.6E-33 174.8 5.5 155 18-193 31-195 (199)
99 2wji_A Ferrous iron transport 99.9 2.1E-26 7E-31 158.9 15.6 148 19-193 2-164 (165)
100 3llu_A RAS-related GTP-binding 99.9 3.2E-27 1.1E-31 167.4 11.1 166 16-192 16-195 (196)
101 2zej_A Dardarin, leucine-rich 99.9 8.5E-27 2.9E-31 163.6 10.8 159 20-192 2-176 (184)
102 2dyk_A GTP-binding protein; GT 99.9 1.3E-26 4.4E-31 158.8 10.8 149 21-193 2-161 (161)
103 3th5_A RAS-related C3 botulinu 99.9 1.6E-28 5.4E-33 175.0 0.0 173 17-192 27-203 (204)
104 1svi_A GTP-binding protein YSX 99.9 3.3E-26 1.1E-30 161.7 11.5 154 18-193 21-194 (195)
105 3pqc_A Probable GTP-binding pr 99.9 4.4E-26 1.5E-30 160.9 11.5 157 18-193 21-193 (195)
106 2qu8_A Putative nucleolar GTP- 99.9 1.4E-25 4.9E-30 162.5 14.0 158 18-192 27-203 (228)
107 2gj8_A MNME, tRNA modification 99.9 3.3E-26 1.1E-30 159.0 9.9 150 19-192 3-164 (172)
108 3r7w_A Gtpase1, GTP-binding pr 99.9 1.1E-25 3.7E-30 169.8 12.8 158 19-191 2-178 (307)
109 2cxx_A Probable GTP-binding pr 99.9 2.6E-26 8.7E-31 161.5 8.5 157 21-192 2-182 (190)
110 2wjg_A FEOB, ferrous iron tran 99.9 8.4E-25 2.9E-29 153.6 14.3 149 17-192 4-167 (188)
111 3i8s_A Ferrous iron transport 99.9 1.9E-25 6.5E-30 165.9 11.3 147 19-192 2-167 (274)
112 3iby_A Ferrous iron transport 99.9 2.3E-25 7.7E-30 163.9 11.5 144 21-191 2-164 (256)
113 1wf3_A GTP-binding protein; GT 99.9 6.1E-25 2.1E-29 165.0 13.9 153 19-192 6-171 (301)
114 3a1s_A Iron(II) transport prot 99.9 5.5E-25 1.9E-29 162.0 13.0 147 18-191 3-164 (258)
115 2wkq_A NPH1-1, RAS-related C3 99.9 7.1E-25 2.4E-29 166.8 14.0 172 17-192 152-328 (332)
116 3iev_A GTP-binding protein ERA 99.9 1.1E-24 3.9E-29 164.2 14.4 157 18-192 8-180 (308)
117 3dpu_A RAB family protein; roc 99.9 6.2E-25 2.1E-29 177.1 13.4 168 3-192 19-206 (535)
118 2f9l_A RAB11B, member RAS onco 99.9 2.6E-24 9.1E-29 152.6 14.7 157 18-192 3-166 (199)
119 3r7w_B Gtpase2, GTP-binding pr 99.9 1.4E-25 4.9E-30 168.3 8.3 159 22-192 1-172 (331)
120 4dhe_A Probable GTP-binding pr 99.9 5.8E-25 2E-29 158.5 9.9 160 18-192 27-209 (223)
121 3b1v_A Ferrous iron uptake tra 99.9 9.4E-25 3.2E-29 161.7 11.1 145 20-192 3-162 (272)
122 3c5h_A Glucocorticoid receptor 99.9 1.3E-25 4.3E-30 165.3 6.1 160 17-192 16-253 (255)
123 3k53_A Ferrous iron transport 99.9 4.9E-24 1.7E-28 158.2 13.6 148 19-192 2-164 (271)
124 2hjg_A GTP-binding protein ENG 99.9 2.9E-24 1E-28 169.2 11.6 157 19-192 174-347 (436)
125 3gee_A MNME, tRNA modification 99.9 4.3E-24 1.5E-28 169.1 12.0 153 17-192 230-396 (476)
126 1xzp_A Probable tRNA modificat 99.9 9E-24 3.1E-28 167.3 12.6 149 19-192 242-403 (482)
127 1cip_A Protein (guanine nucleo 99.9 8.1E-24 2.8E-28 161.6 11.4 135 51-192 180-342 (353)
128 1oix_A RAS-related protein RAB 99.9 5.9E-23 2E-27 144.8 14.1 157 18-192 27-190 (191)
129 2e87_A Hypothetical protein PH 99.9 5.5E-23 1.9E-27 158.1 14.4 156 18-192 165-334 (357)
130 1nrj_B SR-beta, signal recogni 99.9 1.1E-23 3.8E-28 151.3 9.8 123 17-140 9-139 (218)
131 1lnz_A SPO0B-associated GTP-bi 99.9 1.2E-23 4.2E-28 160.1 9.7 154 21-192 159-328 (342)
132 3sjy_A Translation initiation 99.9 3.7E-23 1.3E-27 161.4 12.6 164 16-192 4-190 (403)
133 1wb1_A Translation elongation 99.9 3.5E-23 1.2E-27 164.5 12.6 162 14-192 13-187 (482)
134 3ohm_A Guanine nucleotide-bind 99.9 5.6E-23 1.9E-27 155.0 12.2 136 50-192 153-316 (327)
135 2hjg_A GTP-binding protein ENG 99.9 9.5E-24 3.3E-28 166.2 8.1 149 20-192 3-163 (436)
136 1mky_A Probable GTP-binding pr 99.9 3.3E-23 1.1E-27 163.3 10.5 149 21-192 2-164 (439)
137 1zcb_A G alpha I/13; GTP-bindi 99.9 5.7E-23 2E-27 157.4 11.4 133 53-192 190-351 (362)
138 4dcu_A GTP-binding protein ENG 99.9 2.5E-23 8.7E-28 164.7 9.5 158 18-192 193-367 (456)
139 3qq5_A Small GTP-binding prote 99.9 1.6E-23 5.5E-28 163.3 8.1 150 19-192 33-194 (423)
140 3geh_A MNME, tRNA modification 99.9 4E-23 1.4E-27 163.0 10.3 149 18-192 222-382 (462)
141 2qtf_A Protein HFLX, GTP-bindi 99.9 7E-22 2.4E-26 151.8 15.7 154 19-192 177-352 (364)
142 2ged_A SR-beta, signal recogni 99.9 4.3E-23 1.5E-27 145.5 7.8 129 18-147 46-182 (193)
143 4dcu_A GTP-binding protein ENG 99.9 6.3E-23 2.2E-27 162.4 9.2 152 17-192 20-183 (456)
144 1ega_A Protein (GTP-binding pr 99.9 2.4E-22 8.3E-27 151.0 11.9 152 20-192 8-173 (301)
145 1s0u_A EIF-2-gamma, translatio 99.9 2.5E-21 8.5E-26 151.3 18.0 159 17-192 5-196 (408)
146 3tr5_A RF-3, peptide chain rel 99.9 1.2E-21 4.3E-26 156.8 16.5 125 19-148 12-164 (528)
147 2xtp_A GTPase IMAP family memb 99.9 3.9E-22 1.3E-26 147.1 12.1 158 17-192 19-206 (260)
148 3izy_P Translation initiation 99.9 6.4E-24 2.2E-28 169.6 1.9 157 19-192 3-166 (537)
149 3p26_A Elongation factor 1 alp 99.9 2.8E-22 9.4E-27 159.7 10.2 157 17-184 30-228 (483)
150 3cb4_D GTP-binding protein LEP 99.9 9.4E-22 3.2E-26 159.2 13.2 150 20-192 4-180 (599)
151 2ywe_A GTP-binding protein LEP 99.9 2E-21 6.8E-26 157.1 14.7 155 19-192 5-182 (600)
152 1mky_A Probable GTP-binding pr 99.9 9.8E-22 3.3E-26 154.9 12.6 156 19-191 179-352 (439)
153 1kk1_A EIF2gamma; initiation o 99.9 2.3E-21 8E-26 151.6 14.6 155 17-192 7-198 (410)
154 1zo1_I IF2, translation initia 99.9 6E-23 2E-27 162.8 5.0 156 19-191 3-164 (501)
155 2aka_B Dynamin-1; fusion prote 99.9 1.8E-21 6.2E-26 146.2 12.5 169 5-190 9-249 (299)
156 3j2k_7 ERF3, eukaryotic polype 99.9 4.6E-21 1.6E-25 150.8 14.8 159 17-186 14-217 (439)
157 4fid_A G protein alpha subunit 99.9 3.8E-21 1.3E-25 145.5 13.8 143 50-192 147-326 (340)
158 3izq_1 HBS1P, elongation facto 99.9 5.8E-22 2E-26 161.3 9.7 161 13-184 160-362 (611)
159 2c78_A Elongation factor TU-A; 99.9 2.2E-21 7.6E-26 151.5 12.4 163 17-192 8-210 (405)
160 2elf_A Protein translation elo 99.9 6E-22 2.1E-26 152.5 8.8 149 22-192 23-178 (370)
161 1jny_A EF-1-alpha, elongation 99.9 1.8E-21 6.3E-26 153.1 11.3 155 18-185 4-204 (435)
162 2xtz_A Guanine nucleotide-bind 99.9 8.7E-22 3E-26 150.4 9.1 130 62-192 181-343 (354)
163 1d2e_A Elongation factor TU (E 99.9 3.4E-21 1.1E-25 150.0 12.0 161 19-192 2-193 (397)
164 1g7s_A Translation initiation 99.9 1.6E-21 5.6E-26 157.9 9.3 163 19-191 4-215 (594)
165 1zun_B Sulfate adenylate trans 99.8 9.5E-21 3.3E-25 149.1 12.9 157 17-185 21-215 (434)
166 1f60_A Elongation factor EEF1A 99.8 1E-20 3.5E-25 149.6 13.2 157 16-184 3-202 (458)
167 3lxw_A GTPase IMAP family memb 99.8 8.4E-21 2.9E-25 138.9 11.2 168 17-192 18-206 (247)
168 1azs_C GS-alpha; complex (lyas 99.8 9.7E-21 3.3E-25 146.3 10.6 77 58-134 211-297 (402)
169 3lxx_A GTPase IMAP family memb 99.8 1.4E-20 4.9E-25 137.1 10.4 118 17-136 26-160 (239)
170 3t5d_A Septin-7; GTP-binding p 99.8 3.6E-21 1.2E-25 143.0 7.1 156 19-192 7-202 (274)
171 1r5b_A Eukaryotic peptide chai 99.8 2.4E-20 8.3E-25 147.8 10.5 157 18-185 41-243 (467)
172 3avx_A Elongation factor TS, e 99.8 9.7E-20 3.3E-24 154.5 13.0 163 17-192 293-484 (1289)
173 2h5e_A Peptide chain release f 99.8 5.3E-20 1.8E-24 147.5 10.8 151 18-188 11-189 (529)
174 1dar_A EF-G, elongation factor 99.8 4.9E-19 1.7E-23 146.1 15.4 114 18-136 10-144 (691)
175 3mca_A HBS1, elongation factor 99.8 5.7E-21 1.9E-25 155.1 3.6 159 17-191 174-394 (592)
176 1pui_A ENGB, probable GTP-bind 99.8 2E-19 6.8E-24 128.3 10.8 154 18-192 24-197 (210)
177 1jwy_B Dynamin A GTPase domain 99.8 2.7E-19 9.4E-24 135.2 12.2 174 3-192 6-260 (315)
178 2dy1_A Elongation factor G; tr 99.8 9.3E-19 3.2E-23 144.0 15.4 112 18-134 7-139 (665)
179 3def_A T7I23.11 protein; chlor 99.8 4.1E-19 1.4E-23 131.0 11.2 125 17-142 33-174 (262)
180 2j69_A Bacterial dynamin-like 99.8 6.6E-19 2.3E-23 145.4 11.6 167 18-192 67-323 (695)
181 2xex_A Elongation factor G; GT 99.8 7.6E-18 2.6E-22 139.1 15.5 114 18-136 8-142 (693)
182 2rdo_7 EF-G, elongation factor 99.8 1.1E-17 3.6E-22 138.4 16.2 115 17-136 7-149 (704)
183 2x2e_A Dynamin-1; nitration, h 99.8 3.2E-18 1.1E-22 131.4 10.9 156 18-190 29-254 (353)
184 1udx_A The GTP-binding protein 99.8 2.1E-18 7.2E-23 134.2 9.7 154 21-192 158-323 (416)
185 2qag_A Septin-2, protein NEDD5 99.8 6.8E-20 2.3E-24 140.8 1.2 155 18-191 35-230 (361)
186 3vqt_A RF-3, peptide chain rel 99.8 4E-17 1.4E-21 131.4 16.8 122 21-147 32-181 (548)
187 1wxq_A GTP-binding protein; st 99.7 5.5E-19 1.9E-23 137.1 4.1 80 21-100 1-114 (397)
188 1h65_A Chloroplast outer envel 99.7 1.7E-17 5.7E-22 122.9 11.8 118 17-135 36-168 (270)
189 3t34_A Dynamin-related protein 99.7 7.7E-18 2.6E-22 129.6 8.6 149 19-187 33-254 (360)
190 3p32_A Probable GTPase RV1496/ 99.7 5.2E-18 1.8E-22 130.3 6.3 158 17-192 76-282 (355)
191 3l82_B F-box only protein 4; T 99.7 7.2E-17 2.5E-21 112.9 8.3 110 70-193 108-222 (227)
192 2www_A Methylmalonic aciduria 99.7 1.5E-16 5E-21 121.8 9.5 152 19-192 73-277 (349)
193 2qpt_A EH domain-containing pr 99.7 1.6E-16 5.6E-21 128.0 8.4 114 19-136 64-233 (550)
194 1n0u_A EF-2, elongation factor 99.7 3.3E-16 1.1E-20 131.8 10.4 123 4-134 6-163 (842)
195 2qnr_A Septin-2, protein NEDD5 99.6 5.8E-17 2E-21 121.7 4.1 151 18-192 16-212 (301)
196 2wsm_A Hydrogenase expression/ 99.6 5.6E-17 1.9E-21 116.5 3.8 147 19-192 29-212 (221)
197 1jal_A YCHF protein; nucleotid 99.6 5.5E-15 1.9E-19 112.8 14.7 80 20-99 2-108 (363)
198 3j25_A Tetracycline resistance 99.6 1.7E-16 5.9E-21 130.0 5.9 166 22-192 4-237 (638)
199 4a9a_A Ribosome-interacting GT 99.6 1E-14 3.5E-19 111.9 15.0 112 21-134 73-195 (376)
200 2p67_A LAO/AO transport system 99.6 2E-16 6.9E-21 120.8 5.3 153 17-191 53-258 (341)
201 3zvr_A Dynamin-1; hydrolase, D 99.6 1E-14 3.5E-19 120.4 15.4 156 18-190 49-274 (772)
202 1yrb_A ATP(GTP)binding protein 99.6 1.2E-16 3.9E-21 117.7 3.3 128 64-192 109-255 (262)
203 4fn5_A EF-G 1, elongation fact 99.6 1.5E-14 5E-19 120.0 14.0 121 22-147 15-166 (709)
204 1u0l_A Probable GTPase ENGC; p 99.6 2E-16 6.9E-21 118.8 2.0 131 35-190 32-169 (301)
205 3l2o_B F-box only protein 4; s 99.6 1.2E-15 4E-20 111.8 5.1 109 71-193 194-307 (312)
206 2qag_C Septin-7; cell cycle, c 99.6 9.5E-16 3.2E-20 119.4 3.5 155 18-191 29-224 (418)
207 2dby_A GTP-binding protein; GD 99.5 2.3E-14 7.7E-19 110.0 8.8 79 21-99 2-111 (368)
208 2qm8_A GTPase/ATPase; G protei 99.5 3E-14 1E-18 108.5 7.6 153 17-191 52-258 (337)
209 2hf9_A Probable hydrogenase ni 99.5 1.2E-16 4E-21 115.2 -6.4 57 121-192 164-222 (226)
210 2ohf_A Protein OLA1, GTP-bindi 99.4 5.7E-13 2E-17 102.7 7.1 88 14-101 16-130 (396)
211 2yv5_A YJEQ protein; hydrolase 99.2 6.1E-12 2.1E-16 94.4 3.8 97 74-191 66-166 (302)
212 1ni3_A YCHF GTPase, YCHF GTP-b 99.2 2E-10 6.9E-15 88.7 10.0 85 15-99 15-127 (392)
213 2j37_W Signal recognition part 99.1 1.1E-09 3.9E-14 87.1 14.0 161 19-191 100-310 (504)
214 3sop_A Neuronal-specific septi 99.0 2.8E-09 9.6E-14 78.6 9.7 111 20-136 2-155 (270)
215 3ec1_A YQEH GTPase; atnos1, at 99.0 3.4E-11 1.2E-15 92.7 -1.3 124 20-149 162-306 (369)
216 1tq4_A IIGP1, interferon-induc 98.9 1.3E-08 4.5E-13 79.1 11.4 160 20-192 69-251 (413)
217 2qag_B Septin-6, protein NEDD5 98.9 3.4E-09 1.1E-13 82.5 7.9 110 21-136 43-191 (427)
218 1puj_A YLQF, conserved hypothe 98.9 1.5E-09 5.3E-14 80.5 5.3 100 68-191 3-103 (282)
219 3h2y_A GTPase family protein; 98.9 5E-09 1.7E-13 80.6 7.9 102 73-191 55-157 (368)
220 3h2y_A GTPase family protein; 98.8 3.6E-10 1.2E-14 87.0 0.5 111 20-136 160-288 (368)
221 2v3c_C SRP54, signal recogniti 98.8 3.2E-09 1.1E-13 83.2 4.0 162 21-192 100-309 (432)
222 3ec1_A YQEH GTPase; atnos1, at 98.8 5E-09 1.7E-13 80.7 4.4 102 73-191 57-159 (369)
223 1puj_A YLQF, conserved hypothe 98.7 1.4E-08 4.7E-13 75.4 6.1 58 17-75 117-176 (282)
224 3cnl_A YLQF, putative uncharac 98.7 7.6E-09 2.6E-13 76.0 3.8 54 21-75 100-155 (262)
225 3dm5_A SRP54, signal recogniti 98.6 1.8E-07 6.2E-12 73.2 7.7 110 19-135 99-253 (443)
226 3szr_A Interferon-induced GTP- 98.5 2.2E-07 7.4E-12 76.0 7.5 24 21-44 46-69 (608)
227 1f5n_A Interferon-induced guan 98.5 4.5E-07 1.5E-11 73.5 8.2 59 17-75 35-102 (592)
228 3cnl_A YLQF, putative uncharac 98.4 2.3E-08 7.9E-13 73.4 0.2 94 71-191 4-98 (262)
229 1t9h_A YLOQ, probable GTPase E 98.2 5.8E-07 2E-11 67.3 3.5 86 83-189 82-172 (307)
230 3kl4_A SRP54, signal recogniti 98.2 2.8E-06 9.5E-11 66.5 7.4 108 20-134 97-251 (433)
231 1j8m_F SRP54, signal recogniti 98.0 5.9E-05 2E-09 56.2 9.9 65 62-134 179-252 (297)
232 1bif_A 6-phosphofructo-2-kinas 98.0 1.1E-06 3.7E-11 69.8 0.5 84 18-101 37-134 (469)
233 1tue_A Replication protein E1; 97.9 8.7E-06 3E-10 57.1 4.3 41 2-42 40-80 (212)
234 2rcn_A Probable GTPase ENGC; Y 97.9 1.7E-05 5.9E-10 60.5 5.5 83 84-188 127-213 (358)
235 1ye8_A Protein THEP1, hypothet 97.9 8.6E-06 2.9E-10 56.2 3.2 22 22-43 2-23 (178)
236 1np6_A Molybdopterin-guanine d 97.8 5E-05 1.7E-09 52.1 6.4 108 21-134 7-126 (174)
237 2xxa_A Signal recognition part 97.8 7.2E-05 2.4E-09 58.7 7.8 80 62-149 182-269 (433)
238 3c8u_A Fructokinase; YP_612366 97.8 3.2E-05 1.1E-09 54.5 5.3 26 18-43 20-45 (208)
239 3ec2_A DNA replication protein 97.7 2.4E-05 8.3E-10 53.7 4.1 39 4-43 23-61 (180)
240 3q5d_A Atlastin-1; G protein, 97.7 4.3E-05 1.5E-09 60.0 5.7 26 18-43 65-90 (447)
241 1lvg_A Guanylate kinase, GMP k 97.7 1.4E-05 4.9E-10 55.9 2.8 22 21-42 5-26 (198)
242 3tif_A Uncharacterized ABC tra 97.7 4.2E-05 1.4E-09 55.1 5.1 25 20-44 31-55 (235)
243 1kgd_A CASK, peripheral plasma 97.7 1.7E-05 5.7E-10 54.7 2.9 23 21-43 6-28 (180)
244 2bbw_A Adenylate kinase 4, AK4 97.7 2.2E-05 7.6E-10 56.8 3.6 34 6-41 15-48 (246)
245 1zp6_A Hypothetical protein AT 97.7 2.7E-05 9.3E-10 53.9 3.6 26 18-43 7-32 (191)
246 2pcj_A ABC transporter, lipopr 97.7 6.7E-05 2.3E-09 53.6 5.3 24 21-44 31-54 (224)
247 3end_A Light-independent proto 97.7 0.00054 1.8E-08 51.1 10.5 84 63-150 156-240 (307)
248 4eun_A Thermoresistant glucoki 97.6 3E-05 1E-09 54.3 3.3 24 19-42 28-51 (200)
249 3tr0_A Guanylate kinase, GMP k 97.6 3.2E-05 1.1E-09 54.1 3.4 24 20-43 7-30 (205)
250 2onk_A Molybdate/tungstate ABC 97.6 7.8E-05 2.7E-09 53.8 5.5 24 21-44 25-48 (240)
251 3a00_A Guanylate kinase, GMP k 97.6 2.6E-05 9E-10 54.0 2.8 22 22-43 3-24 (186)
252 1s96_A Guanylate kinase, GMP k 97.6 3.3E-05 1.1E-09 55.0 3.3 27 18-44 14-40 (219)
253 3gfo_A Cobalt import ATP-bindi 97.6 7E-05 2.4E-09 55.2 5.2 25 20-44 34-58 (275)
254 1b0u_A Histidine permease; ABC 97.6 7.3E-05 2.5E-09 54.7 5.2 25 20-44 32-56 (262)
255 1znw_A Guanylate kinase, GMP k 97.6 2.9E-05 1E-09 54.7 2.8 26 19-44 19-44 (207)
256 1g6h_A High-affinity branched- 97.6 9.5E-05 3.3E-09 53.9 5.3 25 20-44 33-57 (257)
257 1kag_A SKI, shikimate kinase I 97.6 3.7E-05 1.3E-09 52.3 2.9 23 21-43 5-27 (173)
258 1odf_A YGR205W, hypothetical 3 97.6 9.7E-05 3.3E-09 54.9 5.3 26 17-42 28-53 (290)
259 1ji0_A ABC transporter; ATP bi 97.6 0.0001 3.5E-09 53.2 5.3 25 20-44 32-56 (240)
260 2ff7_A Alpha-hemolysin translo 97.6 0.00012 4.1E-09 53.1 5.7 25 20-44 35-59 (247)
261 4gp7_A Metallophosphoesterase; 97.6 3.4E-05 1.2E-09 52.7 2.6 21 21-41 10-30 (171)
262 1sgw_A Putative ABC transporte 97.6 0.00012 4.1E-09 51.9 5.5 24 21-44 36-59 (214)
263 1z6g_A Guanylate kinase; struc 97.6 3.6E-05 1.2E-09 54.7 2.8 25 20-44 23-47 (218)
264 2olj_A Amino acid ABC transpor 97.6 9.7E-05 3.3E-09 54.1 5.2 25 20-44 50-74 (263)
265 3asz_A Uridine kinase; cytidin 97.5 4.8E-05 1.6E-09 53.6 3.2 25 19-43 5-29 (211)
266 4g1u_C Hemin import ATP-bindin 97.5 0.00011 3.9E-09 53.8 5.3 25 20-44 37-61 (266)
267 2j41_A Guanylate kinase; GMP, 97.5 5.5E-05 1.9E-09 53.0 3.4 25 20-44 6-30 (207)
268 1vpl_A ABC transporter, ATP-bi 97.5 0.00016 5.4E-09 52.7 5.7 25 20-44 41-65 (256)
269 4dzz_A Plasmid partitioning pr 97.5 0.00059 2E-08 47.6 8.5 68 63-134 75-143 (206)
270 2ixe_A Antigen peptide transpo 97.5 0.00016 5.4E-09 53.2 5.7 26 19-44 44-69 (271)
271 3ney_A 55 kDa erythrocyte memb 97.5 7E-05 2.4E-09 52.4 3.5 25 19-43 18-42 (197)
272 2pze_A Cystic fibrosis transme 97.5 0.00015 5E-09 52.0 5.3 25 20-44 34-58 (229)
273 2yz2_A Putative ABC transporte 97.5 0.00014 4.9E-09 53.3 5.3 25 20-44 33-57 (266)
274 3tau_A Guanylate kinase, GMP k 97.5 7.4E-05 2.5E-09 52.7 3.7 26 19-44 7-32 (208)
275 1qhx_A CPT, protein (chloramph 97.5 7.4E-05 2.5E-09 51.1 3.5 22 21-42 4-25 (178)
276 3fvq_A Fe(3+) IONS import ATP- 97.5 0.00017 5.8E-09 55.1 5.7 24 21-44 31-54 (359)
277 1kht_A Adenylate kinase; phosp 97.5 6.7E-05 2.3E-09 51.8 3.3 23 20-42 3-25 (192)
278 3lw7_A Adenylate kinase relate 97.5 6.7E-05 2.3E-09 50.9 3.2 20 21-40 2-21 (179)
279 1cke_A CK, MSSA, protein (cyti 97.5 7.3E-05 2.5E-09 53.2 3.5 23 20-42 5-27 (227)
280 2p5t_B PEZT; postsegregational 97.5 8.3E-05 2.8E-09 54.1 3.8 34 9-42 21-54 (253)
281 1ex7_A Guanylate kinase; subst 97.5 6.5E-05 2.2E-09 52.1 3.0 21 23-43 4-24 (186)
282 2ihy_A ABC transporter, ATP-bi 97.5 0.00016 5.4E-09 53.4 5.3 25 20-44 47-71 (279)
283 2qor_A Guanylate kinase; phosp 97.5 7.1E-05 2.4E-09 52.5 3.3 24 19-42 11-34 (204)
284 1u0j_A DNA replication protein 97.5 0.00019 6.7E-09 52.4 5.6 36 4-42 90-126 (267)
285 1knq_A Gluconate kinase; ALFA/ 97.5 7.5E-05 2.6E-09 51.0 3.3 24 19-42 7-30 (175)
286 1htw_A HI0065; nucleotide-bind 97.5 8E-05 2.8E-09 50.2 3.4 26 19-44 32-57 (158)
287 3cm0_A Adenylate kinase; ATP-b 97.5 7.3E-05 2.5E-09 51.5 3.2 24 19-42 3-26 (186)
288 2bdt_A BH3686; alpha-beta prot 97.5 6.2E-05 2.1E-09 52.1 2.8 21 22-42 4-24 (189)
289 2cbz_A Multidrug resistance-as 97.5 7E-05 2.4E-09 54.0 3.2 25 20-44 31-55 (237)
290 1gvn_B Zeta; postsegregational 97.4 0.00013 4.6E-09 54.0 4.7 26 17-42 30-55 (287)
291 3kb2_A SPBC2 prophage-derived 97.4 7.9E-05 2.7E-09 50.5 3.1 21 22-42 3-23 (173)
292 1mv5_A LMRA, multidrug resista 97.4 8E-05 2.7E-09 53.9 3.2 26 19-44 27-52 (243)
293 3nh6_A ATP-binding cassette SU 97.4 9.5E-05 3.3E-09 55.3 3.6 26 19-44 79-104 (306)
294 3tui_C Methionine import ATP-b 97.4 0.00019 6.4E-09 54.9 5.3 25 20-44 54-78 (366)
295 2rhm_A Putative kinase; P-loop 97.4 0.0001 3.5E-09 50.9 3.6 24 19-42 4-27 (193)
296 2ffh_A Protein (FFH); SRP54, s 97.4 0.00034 1.1E-08 54.7 6.7 65 62-134 179-250 (425)
297 2w58_A DNAI, primosome compone 97.4 0.00024 8.2E-09 49.6 5.4 39 4-42 38-76 (202)
298 3b85_A Phosphate starvation-in 97.4 6.9E-05 2.4E-09 52.9 2.6 23 21-43 23-45 (208)
299 1g29_1 MALK, maltose transport 97.4 0.00027 9.3E-09 54.3 6.0 24 21-44 30-53 (372)
300 2qi9_C Vitamin B12 import ATP- 97.4 9.2E-05 3.1E-09 53.8 3.2 24 21-44 27-50 (249)
301 1rz3_A Hypothetical protein rb 97.4 0.00022 7.6E-09 49.9 5.1 26 17-42 19-44 (201)
302 2i3b_A HCR-ntpase, human cance 97.4 7.7E-05 2.6E-09 51.9 2.7 22 22-43 3-24 (189)
303 2if2_A Dephospho-COA kinase; a 97.4 9.5E-05 3.2E-09 51.7 3.2 22 21-42 2-23 (204)
304 3uie_A Adenylyl-sulfate kinase 97.4 0.00011 3.6E-09 51.5 3.3 26 18-43 23-48 (200)
305 2plr_A DTMP kinase, probable t 97.4 0.00011 3.7E-09 51.6 3.4 24 19-42 3-26 (213)
306 3fb4_A Adenylate kinase; psych 97.4 9.6E-05 3.3E-09 52.2 3.2 20 22-41 2-21 (216)
307 2ghi_A Transport protein; mult 97.4 9.3E-05 3.2E-09 54.1 3.2 26 19-44 45-70 (260)
308 1y63_A LMAJ004144AAA protein; 97.4 0.00012 4E-09 50.6 3.5 25 19-43 9-33 (184)
309 2d2e_A SUFC protein; ABC-ATPas 97.4 0.0001 3.4E-09 53.6 3.3 23 21-43 30-52 (250)
310 1tev_A UMP-CMP kinase; ploop, 97.4 0.0001 3.5E-09 51.0 3.2 23 20-42 3-25 (196)
311 1ly1_A Polynucleotide kinase; 97.4 0.00011 3.6E-09 50.3 3.2 22 21-42 3-24 (181)
312 2rcn_A Probable GTPase ENGC; Y 97.4 0.0001 3.5E-09 56.3 3.3 25 21-45 216-240 (358)
313 3aez_A Pantothenate kinase; tr 97.4 0.00011 3.6E-09 55.3 3.4 26 17-42 87-112 (312)
314 2v1u_A Cell division control p 97.4 0.0014 4.9E-08 50.0 9.8 25 18-42 42-66 (387)
315 2zu0_C Probable ATP-dependent 97.4 0.00011 3.7E-09 54.0 3.3 24 20-43 46-69 (267)
316 3dl0_A Adenylate kinase; phosp 97.4 0.00011 3.6E-09 52.0 3.2 21 21-41 1-21 (216)
317 1zd8_A GTP:AMP phosphotransfer 97.4 0.00011 3.7E-09 52.4 3.3 22 20-41 7-28 (227)
318 1z47_A CYSA, putative ABC-tran 97.4 0.00024 8.1E-09 54.2 5.2 24 21-44 42-65 (355)
319 2yyz_A Sugar ABC transporter, 97.4 0.00024 8.2E-09 54.3 5.2 24 21-44 30-53 (359)
320 1jjv_A Dephospho-COA kinase; P 97.4 0.00011 3.9E-09 51.5 3.2 22 21-42 3-24 (206)
321 3vaa_A Shikimate kinase, SK; s 97.4 0.00013 4.4E-09 51.0 3.5 23 20-42 25-47 (199)
322 3rlf_A Maltose/maltodextrin im 97.4 0.00024 8.3E-09 54.6 5.2 24 21-44 30-53 (381)
323 2v54_A DTMP kinase, thymidylat 97.4 0.00014 4.8E-09 50.8 3.6 25 19-43 3-27 (204)
324 2it1_A 362AA long hypothetical 97.4 0.00025 8.7E-09 54.2 5.3 24 21-44 30-53 (362)
325 2nq2_C Hypothetical ABC transp 97.4 0.00011 3.8E-09 53.5 3.1 24 21-44 32-55 (253)
326 2jeo_A Uridine-cytidine kinase 97.3 0.00012 4.1E-09 52.9 3.3 24 19-42 24-47 (245)
327 3tqc_A Pantothenate kinase; bi 97.3 0.00026 9E-09 53.3 5.2 26 17-42 89-114 (321)
328 2cdn_A Adenylate kinase; phosp 97.3 0.00015 5.3E-09 50.6 3.8 26 17-42 17-42 (201)
329 2v9p_A Replication protein E1; 97.3 0.00012 4.2E-09 54.6 3.4 25 18-42 124-148 (305)
330 2yvu_A Probable adenylyl-sulfa 97.3 0.00016 5.5E-09 49.8 3.8 27 16-42 9-35 (186)
331 2eyu_A Twitching motility prot 97.3 0.00012 4.1E-09 53.5 3.1 26 18-43 23-48 (261)
332 3trf_A Shikimate kinase, SK; a 97.3 0.00013 4.6E-09 50.1 3.2 23 20-42 5-27 (185)
333 1v43_A Sugar-binding transport 97.3 0.00029 9.9E-09 54.1 5.3 25 20-44 37-61 (372)
334 2pjz_A Hypothetical protein ST 97.3 0.00013 4.6E-09 53.3 3.2 24 21-44 31-54 (263)
335 2wwf_A Thymidilate kinase, put 97.3 0.00017 5.8E-09 50.6 3.7 25 18-42 8-32 (212)
336 3t61_A Gluconokinase; PSI-biol 97.3 0.00012 4E-09 51.2 2.8 22 21-42 19-40 (202)
337 2qt1_A Nicotinamide riboside k 97.3 0.00016 5.5E-09 50.7 3.5 26 18-43 19-44 (207)
338 3tlx_A Adenylate kinase 2; str 97.3 0.00021 7E-09 51.7 4.1 25 18-42 27-51 (243)
339 3iij_A Coilin-interacting nucl 97.3 0.00016 5.5E-09 49.6 3.3 25 18-42 9-33 (180)
340 1aky_A Adenylate kinase; ATP:A 97.3 0.00016 5.5E-09 51.3 3.4 23 20-42 4-26 (220)
341 2ehv_A Hypothetical protein PH 97.3 0.00014 4.7E-09 52.4 3.0 24 18-41 28-51 (251)
342 2jaq_A Deoxyguanosine kinase; 97.3 0.00016 5.5E-09 50.4 3.2 21 22-42 2-22 (205)
343 3sr0_A Adenylate kinase; phosp 97.3 0.00017 5.8E-09 50.8 3.3 21 21-41 1-21 (206)
344 4a74_A DNA repair and recombin 97.3 0.00014 4.6E-09 51.8 2.8 25 18-42 23-47 (231)
345 2c95_A Adenylate kinase 1; tra 97.3 0.00016 5.5E-09 50.1 3.1 24 19-42 8-31 (196)
346 1oxx_K GLCV, glucose, ABC tran 97.3 0.00022 7.4E-09 54.4 4.1 25 20-44 31-55 (353)
347 1nks_A Adenylate kinase; therm 97.3 0.00016 5.6E-09 49.8 3.1 21 22-42 3-23 (194)
348 3lnc_A Guanylate kinase, GMP k 97.3 9.5E-05 3.3E-09 52.9 1.9 24 20-43 27-51 (231)
349 3bos_A Putative DNA replicatio 97.3 0.00035 1.2E-08 49.8 4.9 35 4-42 40-74 (242)
350 1nn5_A Similar to deoxythymidy 97.3 0.00019 6.4E-09 50.5 3.4 24 19-42 8-31 (215)
351 3d31_A Sulfate/molybdate ABC t 97.2 0.00023 8E-09 54.1 4.0 24 21-44 27-50 (348)
352 4e22_A Cytidylate kinase; P-lo 97.2 0.0002 6.9E-09 52.0 3.5 24 18-41 25-48 (252)
353 2bbs_A Cystic fibrosis transme 97.2 0.00017 5.9E-09 53.5 3.1 26 19-44 63-88 (290)
354 1jbk_A CLPB protein; beta barr 97.2 0.00041 1.4E-08 47.4 4.8 24 20-43 43-66 (195)
355 1e4v_A Adenylate kinase; trans 97.2 0.00019 6.5E-09 50.7 3.1 21 22-42 2-22 (214)
356 1t9h_A YLOQ, probable GTPase E 97.2 5.4E-05 1.9E-09 56.6 0.3 26 19-44 172-197 (307)
357 1u0l_A Probable GTPase ENGC; p 97.2 0.00018 6E-09 53.8 3.0 24 21-44 170-193 (301)
358 2pt5_A Shikimate kinase, SK; a 97.2 0.00021 7.3E-09 48.2 3.2 21 22-42 2-22 (168)
359 1via_A Shikimate kinase; struc 97.2 0.00018 6E-09 49.1 2.7 21 22-42 6-26 (175)
360 2x8a_A Nuclear valosin-contain 97.2 0.00017 5.9E-09 53.1 2.8 21 23-43 47-67 (274)
361 1sq5_A Pantothenate kinase; P- 97.2 0.00022 7.4E-09 53.5 3.3 25 18-42 78-102 (308)
362 2kjq_A DNAA-related protein; s 97.2 0.00016 5.5E-09 48.2 2.3 25 19-43 35-59 (149)
363 2f1r_A Molybdopterin-guanine d 97.2 9.4E-05 3.2E-09 50.6 1.1 70 22-96 4-76 (171)
364 2yv5_A YJEQ protein; hydrolase 97.2 0.00023 7.8E-09 53.2 3.2 24 20-44 165-188 (302)
365 1vht_A Dephospho-COA kinase; s 97.2 0.00026 8.9E-09 50.1 3.4 23 20-42 4-26 (218)
366 1lw7_A Transcriptional regulat 97.2 0.00017 5.8E-09 55.3 2.5 24 20-43 170-193 (365)
367 1uf9_A TT1252 protein; P-loop, 97.2 0.00027 9.4E-09 49.2 3.4 25 19-43 7-31 (203)
368 2vli_A Antibiotic resistance p 97.2 0.00017 5.9E-09 49.4 2.3 23 20-42 5-27 (183)
369 3r20_A Cytidylate kinase; stru 97.1 0.00027 9.3E-09 50.7 3.3 25 18-42 7-31 (233)
370 2pez_A Bifunctional 3'-phospho 97.1 0.0003 1E-08 48.1 3.3 24 19-42 4-27 (179)
371 1ixz_A ATP-dependent metallopr 97.1 0.00024 8.2E-09 51.5 2.9 22 22-43 51-72 (254)
372 3jvv_A Twitching mobility prot 97.1 0.00025 8.5E-09 54.2 3.0 22 22-43 125-146 (356)
373 1zak_A Adenylate kinase; ATP:A 97.1 0.00026 8.9E-09 50.2 2.9 21 21-41 6-26 (222)
374 2bwj_A Adenylate kinase 5; pho 97.1 0.00032 1.1E-08 48.7 3.3 22 21-42 13-34 (199)
375 3a4m_A L-seryl-tRNA(SEC) kinas 97.1 0.00032 1.1E-08 51.1 3.3 22 21-42 5-26 (260)
376 2pbr_A DTMP kinase, thymidylat 97.1 0.00032 1.1E-08 48.4 3.1 21 22-42 2-22 (195)
377 2grj_A Dephospho-COA kinase; T 97.1 0.00034 1.1E-08 48.7 3.2 26 17-42 9-34 (192)
378 2xb4_A Adenylate kinase; ATP-b 97.1 0.00032 1.1E-08 49.9 3.2 21 22-42 2-22 (223)
379 2p65_A Hypothetical protein PF 97.1 0.00048 1.6E-08 47.0 4.0 24 20-43 43-66 (187)
380 1ak2_A Adenylate kinase isoenz 97.1 0.00038 1.3E-08 49.9 3.5 24 19-42 15-38 (233)
381 3be4_A Adenylate kinase; malar 97.1 0.00036 1.2E-08 49.4 3.2 22 21-42 6-27 (217)
382 2iyv_A Shikimate kinase, SK; t 97.1 0.00028 9.6E-09 48.4 2.7 21 22-42 4-24 (184)
383 1ukz_A Uridylate kinase; trans 97.1 0.0004 1.4E-08 48.5 3.5 22 20-41 15-36 (203)
384 2pt7_A CAG-ALFA; ATPase, prote 97.1 0.00031 1.1E-08 53.1 3.0 24 21-44 172-195 (330)
385 1rj9_A FTSY, signal recognitio 97.1 0.00044 1.5E-08 51.7 3.8 22 20-41 102-123 (304)
386 2z0h_A DTMP kinase, thymidylat 97.1 0.00037 1.3E-08 48.3 3.2 21 22-42 2-22 (197)
387 1zuh_A Shikimate kinase; alpha 97.0 0.00038 1.3E-08 47.1 3.2 22 21-42 8-29 (168)
388 3gd7_A Fusion complex of cysti 97.0 0.00033 1.1E-08 54.2 3.0 25 20-44 47-71 (390)
389 3cwq_A Para family chromosome 97.0 0.0067 2.3E-07 42.6 9.6 67 63-135 67-134 (209)
390 2gza_A Type IV secretion syste 97.0 0.00032 1.1E-08 53.7 2.9 25 20-44 175-199 (361)
391 2ze6_A Isopentenyl transferase 97.0 0.00034 1.2E-08 50.8 2.9 21 22-42 3-23 (253)
392 1e6c_A Shikimate kinase; phosp 97.0 0.00037 1.3E-08 47.2 2.9 21 22-42 4-24 (173)
393 3b60_A Lipid A export ATP-bind 97.0 0.001 3.5E-08 54.1 6.0 26 19-44 368-393 (582)
394 1qf9_A UMP/CMP kinase, protein 97.0 0.00045 1.5E-08 47.6 3.3 22 21-42 7-28 (194)
395 1in4_A RUVB, holliday junction 97.0 0.00033 1.1E-08 53.0 2.8 23 21-43 52-74 (334)
396 2ewv_A Twitching motility prot 97.0 0.00035 1.2E-08 53.7 3.0 24 19-42 135-158 (372)
397 1xjc_A MOBB protein homolog; s 97.0 0.00048 1.6E-08 46.9 3.2 22 21-42 5-26 (169)
398 1iy2_A ATP-dependent metallopr 97.0 0.00037 1.3E-08 51.3 2.9 22 22-43 75-96 (278)
399 2vp4_A Deoxynucleoside kinase; 97.0 0.00039 1.3E-08 49.7 2.9 26 18-43 18-43 (230)
400 3t15_A Ribulose bisphosphate c 97.0 0.00041 1.4E-08 51.5 3.0 25 18-42 34-58 (293)
401 1uj2_A Uridine-cytidine kinase 97.0 0.00046 1.6E-08 50.0 3.2 24 19-42 21-44 (252)
402 3e70_C DPA, signal recognition 97.0 0.00048 1.6E-08 52.0 3.4 24 19-42 128-151 (328)
403 3b9q_A Chloroplast SRP recepto 97.0 0.00048 1.6E-08 51.4 3.4 24 19-42 99-122 (302)
404 3kta_A Chromosome segregation 97.0 0.00045 1.5E-08 47.3 3.0 21 22-42 28-48 (182)
405 3b5x_A Lipid A export ATP-bind 97.0 0.00089 3.1E-08 54.5 5.2 26 19-44 368-393 (582)
406 3umf_A Adenylate kinase; rossm 97.0 0.00066 2.3E-08 48.2 3.9 21 21-41 30-50 (217)
407 2w0m_A SSO2452; RECA, SSPF, un 97.0 0.00041 1.4E-08 49.2 2.8 24 19-42 22-45 (235)
408 3nwj_A ATSK2; P loop, shikimat 97.0 0.00034 1.2E-08 50.8 2.4 23 20-42 48-70 (250)
409 3n70_A Transport activator; si 97.0 0.001 3.5E-08 43.9 4.6 26 19-44 23-48 (145)
410 1fnn_A CDC6P, cell division co 96.9 0.00079 2.7E-08 51.6 4.5 22 22-43 46-67 (389)
411 4b4t_L 26S protease subunit RP 96.9 0.022 7.4E-07 44.7 12.5 26 18-43 213-238 (437)
412 2yl4_A ATP-binding cassette SU 96.9 0.0011 3.6E-08 54.2 5.4 26 19-44 369-394 (595)
413 1p9r_A General secretion pathw 96.9 0.00041 1.4E-08 54.1 2.8 23 21-43 168-190 (418)
414 2oap_1 GSPE-2, type II secreti 96.9 0.00047 1.6E-08 55.2 3.1 24 21-44 261-284 (511)
415 2chg_A Replication factor C sm 96.9 0.001 3.4E-08 46.6 4.5 21 22-42 40-60 (226)
416 1lv7_A FTSH; alpha/beta domain 96.9 0.00062 2.1E-08 49.4 3.4 24 20-43 45-68 (257)
417 1njg_A DNA polymerase III subu 96.9 0.00091 3.1E-08 47.4 4.2 21 22-42 47-67 (250)
418 2f6r_A COA synthase, bifunctio 96.9 0.00068 2.3E-08 50.1 3.6 23 19-41 74-96 (281)
419 3qf4_B Uncharacterized ABC tra 96.9 0.0013 4.5E-08 53.7 5.5 26 19-44 380-405 (598)
420 3gmt_A Adenylate kinase; ssgci 96.9 0.00066 2.3E-08 48.5 3.3 25 17-41 5-29 (230)
421 2qby_A CDC6 homolog 1, cell di 96.9 0.00061 2.1E-08 52.0 3.4 25 18-42 43-67 (386)
422 4a82_A Cystic fibrosis transme 96.9 0.00099 3.4E-08 54.2 4.7 26 19-44 366-391 (578)
423 1m7g_A Adenylylsulfate kinase; 96.9 0.00069 2.4E-08 47.7 3.4 25 18-42 23-47 (211)
424 1gtv_A TMK, thymidylate kinase 96.9 0.0002 6.8E-09 50.4 0.6 21 22-42 2-22 (214)
425 2qgz_A Helicase loader, putati 96.9 0.0015 5.2E-08 48.8 5.3 37 5-42 138-174 (308)
426 2qz4_A Paraplegin; AAA+, SPG7, 96.9 0.0013 4.5E-08 47.6 4.9 24 19-42 38-61 (262)
427 4eaq_A DTMP kinase, thymidylat 96.9 0.00078 2.7E-08 48.2 3.6 25 18-42 24-48 (229)
428 3b9p_A CG5977-PA, isoform A; A 96.9 0.001 3.4E-08 49.3 4.3 25 19-43 53-77 (297)
429 1cr0_A DNA primase/helicase; R 96.9 0.00054 1.8E-08 50.8 2.8 25 18-42 33-57 (296)
430 2npi_A Protein CLP1; CLP1-PCF1 96.9 0.00056 1.9E-08 54.1 3.0 25 19-43 137-161 (460)
431 2obl_A ESCN; ATPase, hydrolase 96.9 0.0006 2.1E-08 51.9 3.1 26 19-44 70-95 (347)
432 2qby_B CDC6 homolog 3, cell di 96.8 0.0013 4.3E-08 50.4 4.9 23 20-42 45-67 (384)
433 1l8q_A Chromosomal replication 96.8 0.0011 3.9E-08 49.7 4.5 35 6-42 25-59 (324)
434 1svm_A Large T antigen; AAA+ f 96.8 0.0012 4E-08 50.9 4.6 25 18-42 167-191 (377)
435 3vfd_A Spastin; ATPase, microt 96.8 0.0047 1.6E-07 47.7 7.9 24 20-43 148-171 (389)
436 1yqt_A RNAse L inhibitor; ATP- 96.8 0.0007 2.4E-08 54.6 3.3 26 19-44 46-71 (538)
437 1sxj_E Activator 1 40 kDa subu 96.8 0.00094 3.2E-08 50.7 3.8 20 23-42 39-58 (354)
438 2og2_A Putative signal recogni 96.8 0.00081 2.8E-08 51.4 3.4 24 19-42 156-179 (359)
439 1n0w_A DNA repair protein RAD5 96.8 0.00069 2.4E-08 48.5 2.9 25 18-42 22-46 (243)
440 1f2t_A RAD50 ABC-ATPase; DNA d 96.8 0.00082 2.8E-08 44.7 3.0 19 23-41 26-44 (149)
441 3syl_A Protein CBBX; photosynt 96.8 0.0014 4.7E-08 48.8 4.6 25 18-42 65-89 (309)
442 1nij_A Hypothetical protein YJ 96.8 0.00065 2.2E-08 51.1 2.8 23 21-43 5-27 (318)
443 3ake_A Cytidylate kinase; CMP 96.8 0.00093 3.2E-08 46.6 3.4 21 22-42 4-24 (208)
444 4fcw_A Chaperone protein CLPB; 96.8 0.002 6.7E-08 47.9 5.4 23 21-43 48-70 (311)
445 4b4t_I 26S protease regulatory 96.8 0.015 5E-07 45.4 10.2 26 18-43 214-239 (437)
446 1q3t_A Cytidylate kinase; nucl 96.8 0.00099 3.4E-08 47.7 3.5 24 19-42 15-38 (236)
447 2yhs_A FTSY, cell division pro 96.7 0.00089 3E-08 53.2 3.4 24 19-42 292-315 (503)
448 3euj_A Chromosome partition pr 96.7 0.00075 2.6E-08 53.5 2.9 23 21-43 30-52 (483)
449 2cvh_A DNA repair and recombin 96.7 0.0012 4.2E-08 46.4 3.7 26 17-42 17-42 (220)
450 4b4t_M 26S protease regulatory 96.7 0.0015 5.1E-08 51.1 4.4 26 18-43 213-238 (434)
451 3ozx_A RNAse L inhibitor; ATP 96.7 0.001 3.6E-08 53.6 3.6 27 18-44 23-49 (538)
452 3h4m_A Proteasome-activating n 96.7 0.001 3.5E-08 48.9 3.4 26 18-43 49-74 (285)
453 1ltq_A Polynucleotide kinase; 96.7 0.00091 3.1E-08 49.6 2.9 22 21-42 3-24 (301)
454 2dpy_A FLII, flagellum-specifi 96.7 0.00093 3.2E-08 52.5 3.1 26 19-44 156-181 (438)
455 1a7j_A Phosphoribulokinase; tr 96.7 0.00059 2E-08 50.7 1.8 24 19-42 4-27 (290)
456 2ga8_A Hypothetical 39.9 kDa p 96.7 0.0027 9.4E-08 48.3 5.4 23 20-42 24-46 (359)
457 1d2n_A N-ethylmaleimide-sensit 96.7 0.0023 7.9E-08 46.7 5.0 26 18-43 62-87 (272)
458 3te6_A Regulatory protein SIR3 96.7 0.0011 3.7E-08 49.8 3.2 27 17-43 42-68 (318)
459 4b4t_K 26S protease regulatory 96.7 0.0018 6.1E-08 50.7 4.5 25 19-43 205-229 (428)
460 3j16_B RLI1P; ribosome recycli 96.7 0.0011 3.6E-08 54.3 3.3 26 19-44 102-127 (608)
461 3k9g_A PF-32 protein; ssgcid, 96.7 0.026 8.7E-07 41.0 10.5 66 63-133 144-209 (267)
462 3cf0_A Transitional endoplasmi 96.7 0.0012 4.1E-08 49.2 3.4 25 19-43 48-72 (301)
463 3qf4_A ABC transporter, ATP-bi 96.6 0.0019 6.7E-08 52.6 4.8 26 19-44 368-393 (587)
464 3qf7_A RAD50; ABC-ATPase, ATPa 96.6 0.0011 3.7E-08 50.9 3.0 19 23-41 26-44 (365)
465 2h92_A Cytidylate kinase; ross 96.6 0.0011 3.6E-08 46.8 2.8 23 20-42 3-25 (219)
466 1sxj_C Activator 1 40 kDa subu 96.6 0.0017 5.8E-08 49.1 4.1 22 22-43 48-69 (340)
467 3bk7_A ABC transporter ATP-bin 96.6 0.0011 3.8E-08 54.2 3.2 26 19-44 116-141 (607)
468 1sxj_D Activator 1 41 kDa subu 96.6 0.0022 7.7E-08 48.4 4.7 22 22-43 60-81 (353)
469 3co5_A Putative two-component 96.6 0.00074 2.5E-08 44.5 1.7 24 20-43 27-50 (143)
470 1yqt_A RNAse L inhibitor; ATP- 96.6 0.0013 4.4E-08 53.1 3.3 25 20-44 312-336 (538)
471 1nlf_A Regulatory protein REPA 96.6 0.0012 3.9E-08 48.6 2.8 24 19-42 29-52 (279)
472 1sxj_A Activator 1 95 kDa subu 96.6 0.0026 8.9E-08 51.0 5.0 22 21-42 78-99 (516)
473 3ozx_A RNAse L inhibitor; ATP 96.6 0.0013 4.5E-08 53.0 3.2 24 21-44 295-318 (538)
474 2ce7_A Cell division protein F 96.5 0.002 6.7E-08 51.2 4.1 23 21-43 50-72 (476)
475 4f4c_A Multidrug resistance pr 96.5 0.0015 5E-08 58.2 3.5 25 19-43 1104-1128(1321)
476 3bk7_A ABC transporter ATP-bin 96.5 0.0015 5.1E-08 53.4 3.3 25 20-44 382-406 (607)
477 4b4t_J 26S protease regulatory 96.5 0.0013 4.6E-08 50.8 2.8 26 18-43 180-205 (405)
478 3eie_A Vacuolar protein sortin 96.5 0.002 6.8E-08 48.4 3.6 24 19-42 50-73 (322)
479 2qmh_A HPR kinase/phosphorylas 96.5 0.0021 7.1E-08 44.9 3.4 25 20-44 34-58 (205)
480 1xwi_A SKD1 protein; VPS4B, AA 96.5 0.0021 7.3E-08 48.3 3.6 24 19-42 44-67 (322)
481 2dr3_A UPF0273 protein PH0284; 96.4 0.0017 5.9E-08 46.4 3.0 23 19-41 22-44 (247)
482 2z4s_A Chromosomal replication 96.4 0.0029 9.8E-08 49.8 4.4 23 20-42 130-152 (440)
483 3uk6_A RUVB-like 2; hexameric 96.4 0.0038 1.3E-07 47.6 4.9 23 20-42 70-92 (368)
484 1ofh_A ATP-dependent HSL prote 96.4 0.0018 6.3E-08 48.0 3.0 23 20-42 50-72 (310)
485 2px0_A Flagellar biosynthesis 96.4 0.0019 6.4E-08 48.1 3.0 23 19-41 104-126 (296)
486 3pfi_A Holliday junction ATP-d 96.4 0.0031 1.1E-07 47.5 4.4 25 19-43 54-78 (338)
487 4f4c_A Multidrug resistance pr 96.4 0.0037 1.3E-07 55.6 5.2 25 19-43 443-467 (1321)
488 1c9k_A COBU, adenosylcobinamid 96.4 0.0024 8E-08 43.9 3.2 21 23-43 2-22 (180)
489 3pxg_A Negative regulator of g 96.4 0.0029 1E-07 50.1 4.2 24 20-43 201-224 (468)
490 3j16_B RLI1P; ribosome recycli 96.4 0.002 6.9E-08 52.6 3.3 23 22-44 380-402 (608)
491 3exa_A TRNA delta(2)-isopenten 96.4 0.0023 7.8E-08 47.9 3.3 24 20-43 3-26 (322)
492 2c9o_A RUVB-like 1; hexameric 96.4 0.004 1.4E-07 49.1 4.9 24 19-42 62-85 (456)
493 1pzn_A RAD51, DNA repair and r 96.4 0.0018 6.3E-08 49.3 2.8 26 18-43 129-154 (349)
494 3zvl_A Bifunctional polynucleo 96.4 0.0025 8.7E-08 49.7 3.7 24 19-42 257-280 (416)
495 3cr8_A Sulfate adenylyltranfer 96.3 0.0012 4.2E-08 53.3 1.8 26 18-43 367-392 (552)
496 3tqf_A HPR(Ser) kinase; transf 96.3 0.0024 8.1E-08 43.5 2.9 23 21-43 17-39 (181)
497 3qks_A DNA double-strand break 96.3 0.0024 8.2E-08 44.7 3.0 20 22-41 25-44 (203)
498 1p5z_B DCK, deoxycytidine kina 96.3 0.0015 5.1E-08 47.6 2.0 26 18-43 22-47 (263)
499 4edh_A DTMP kinase, thymidylat 96.3 0.0028 9.4E-08 44.8 3.2 24 18-41 4-27 (213)
500 3d3q_A TRNA delta(2)-isopenten 96.3 0.0026 9E-08 48.1 3.2 22 21-42 8-29 (340)
No 1
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=100.00 E-value=8.1e-37 Score=217.27 Aligned_cols=192 Identities=61% Similarity=1.063 Sum_probs=149.6
Q ss_pred chHHH----HHHHHHhhCCCCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhh
Q 029437 2 FLLDW----FYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIA 77 (193)
Q Consensus 2 ~~~~~----~~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~ 77 (193)
+|+.| +...+.+.....+.++|+++|++|||||||++++.+..+....||.+.....+.+++..+.+|||||++.+
T Consensus 3 ~~~~~~~~~~~~~l~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~ 82 (198)
T 1f6b_A 3 FIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQA 82 (198)
T ss_dssp ----------CHHHHHHTCTTCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEEEEEEECC----
T ss_pred HHHHHHHHHHHHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEEEEEEECCCcHhh
Confidence 46777 76777777777788999999999999999999999988887778888888888899999999999999999
Q ss_pred HhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCc
Q 029437 78 RRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGK 157 (193)
Q Consensus 78 ~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (193)
+..+..+++.+|++++|+|+++++++.....++..++......+.|+++++||+|+......+++.+.++......+...
T Consensus 83 ~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 162 (198)
T 1f6b_A 83 RRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGS 162 (198)
T ss_dssp CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSC
T ss_pred HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccc
Confidence 88888899999999999999999999999999999876655578999999999999877778888877765543334333
Q ss_pred cccCCCCCcceEEEEeeeecCCChhhHHHhhhhhcC
Q 029437 158 VNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK 193 (193)
Q Consensus 158 ~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~~ 193 (193)
.++.+.......+++|||++|.|++++|++|.+.++
T Consensus 163 ~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~l~ 198 (198)
T 1f6b_A 163 VSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYID 198 (198)
T ss_dssp CCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTTCC
T ss_pred cccccccCceEEEEEEECCCCCCHHHHHHHHHHhcC
Confidence 334333335678999999999999999999998764
No 2
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=100.00 E-value=2.8e-35 Score=208.05 Aligned_cols=186 Identities=63% Similarity=1.057 Sum_probs=142.3
Q ss_pred chHHHHHHHHHhhCCCCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhH
Q 029437 2 FLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVW 81 (193)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~ 81 (193)
+|+.++...+.......+.++|+++|++|||||||++++.+..+....+|.+.....+.+++..+.+|||||++.++..+
T Consensus 5 ~~~~~~~~~l~~~~~~~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 84 (190)
T 1m2o_B 5 DIFGWFRDVLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLW 84 (190)
T ss_dssp -------------------CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEEEEEEECCCSGGGTTSG
T ss_pred HHHHHHHHHHHHhhccCCccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEEEEEEECCCCHHHHHHH
Confidence 56788888887777777889999999999999999999999998888889888888889999999999999999999888
Q ss_pred HhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccC
Q 029437 82 KDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLA 161 (193)
Q Consensus 82 ~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (193)
..+++.+|++++|+|++++++++....++..++......+.|+++++||+|+......+++.+.++... ....+. +
T Consensus 85 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~-~~~~~~--~- 160 (190)
T 1m2o_B 85 KDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLN-TTGSQR--I- 160 (190)
T ss_dssp GGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSS-CCC-----C-
T ss_pred HHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCcc-cccccc--c-
Confidence 889999999999999999999999999999987665557899999999999987777778777766543 111111 1
Q ss_pred CCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 162 DSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 162 ~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
.....+.+++|||++|.|++++|++|.+.+
T Consensus 161 -~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~l 190 (190)
T 1m2o_B 161 -EGQRPVEVFMCSVVMRNGYLEAFQWLSQYI 190 (190)
T ss_dssp -CSSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred -cccceEEEEEeECCcCCCHHHHHHHHHhhC
Confidence 112457899999999999999999998764
No 3
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=100.00 E-value=9.9e-34 Score=195.12 Aligned_cols=160 Identities=33% Similarity=0.585 Sum_probs=139.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCCh
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDK 100 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~ 100 (193)
+||+++|++|+|||||++++.+..+....||.+.....+.+.+..+.+|||||++.++..+..+++.+|++++|+|++++
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 80 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 80 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCG
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCcccCcCceeEEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCH
Confidence 58999999999999999999988888888888888888888889999999999999999989999999999999999999
Q ss_pred hhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCC
Q 029437 101 ERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMG 180 (193)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 180 (193)
+++.....++..++......+.|+++++||+|+.......++.+.++.... ....+++++|||++|.|
T Consensus 81 ~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~Sa~~~~g 148 (164)
T 1r8s_A 81 ERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL------------RHRNWYIQATCATSGDG 148 (164)
T ss_dssp GGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGC------------SSCCEEEEECBTTTTBT
T ss_pred HHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccc------------cCccEEEEEcccCCCcC
Confidence 999999999998877655678999999999999876666777776664431 01246799999999999
Q ss_pred hhhHHHhhhhhc
Q 029437 181 YGDGFKWLSQYI 192 (193)
Q Consensus 181 v~el~~~i~~~~ 192 (193)
++++|++|.+.+
T Consensus 149 i~~l~~~l~~~i 160 (164)
T 1r8s_A 149 LYEGLDWLSNQL 160 (164)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 999999998875
No 4
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=100.00 E-value=1.3e-33 Score=197.99 Aligned_cols=163 Identities=36% Similarity=0.643 Sum_probs=140.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEEC
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDA 97 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~ 97 (193)
...++|+++|++|||||||++++.+..+....||.+.....+.+++..+.+|||||++.++..+..++..+|++++|+|+
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~ 93 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDS 93 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEET
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEEC
Confidence 67799999999999999999999998877777888877778888899999999999999999989999999999999999
Q ss_pred CChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeec
Q 029437 98 YDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVR 177 (193)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 177 (193)
++++++.....++..++......+.|+++++||+|+......+++.+.++.... ....+.+++|||++
T Consensus 94 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~Sa~~ 161 (181)
T 1fzq_A 94 ADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTI------------RDRVWQIQSCSALT 161 (181)
T ss_dssp TCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGC------------CSSCEEEEECCTTT
T ss_pred cCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhc------------cCCceEEEEccCCC
Confidence 999999999999988876555578999999999999876666777766654321 11346899999999
Q ss_pred CCChhhHHHhhhhhc
Q 029437 178 KMGYGDGFKWLSQYI 192 (193)
Q Consensus 178 g~gv~el~~~i~~~~ 192 (193)
|.|++++|++|.+.+
T Consensus 162 g~gi~~l~~~l~~~~ 176 (181)
T 1fzq_A 162 GEGVQDGMNWVCKNV 176 (181)
T ss_dssp CTTHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999998765
No 5
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=100.00 E-value=2.1e-33 Score=197.49 Aligned_cols=163 Identities=32% Similarity=0.565 Sum_probs=140.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEEC
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDA 97 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~ 97 (193)
++.++|+++|++|||||||++++.+.......||.+.....+.+++..+.+|||||++.+...+..+++.+|++++|+|+
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~ 95 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDS 95 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEET
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEEC
Confidence 56799999999999999999999988866677888888888888899999999999999999888999999999999999
Q ss_pred CChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeec
Q 029437 98 YDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVR 177 (193)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 177 (193)
+++++++.+..++..++......+.|+++++||+|+......+++.+.+..... ....+++++|||++
T Consensus 96 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~Sa~~ 163 (186)
T 1ksh_A 96 ADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSI------------RSHHWRIQGCSAVT 163 (186)
T ss_dssp TCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGC------------CSSCEEEEECCTTT
T ss_pred cCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhc------------cCCceEEEEeeCCC
Confidence 999999999999999877655578999999999999877677777776654321 01346899999999
Q ss_pred CCChhhHHHhhhhhc
Q 029437 178 KMGYGDGFKWLSQYI 192 (193)
Q Consensus 178 g~gv~el~~~i~~~~ 192 (193)
|.|+++++++|.+.+
T Consensus 164 ~~gi~~l~~~l~~~i 178 (186)
T 1ksh_A 164 GEDLLPGIDWLLDDI 178 (186)
T ss_dssp CTTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999998764
No 6
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.4e-33 Score=197.40 Aligned_cols=173 Identities=28% Similarity=0.539 Sum_probs=142.0
Q ss_pred HHHHHHHhhCCCCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhc
Q 029437 6 WFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYY 85 (193)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~ 85 (193)
++..++.+. .++.++|+++|++|||||||++++.+..+....||.+.....+.+++..+.+|||||++.+...+..++
T Consensus 4 ~~~~~~~~~--~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~ 81 (187)
T 1zj6_A 4 LFTRIWRLF--NHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYY 81 (187)
T ss_dssp HHHHHHHHH--TTSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEEETTEEEEEEECCC----CGGGHHHH
T ss_pred HHHHHHHhc--CCCccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccceEEEEECCEEEEEEECCCCHhHHHHHHHHh
Confidence 444444432 356799999999999999999999988888777888888888888999999999999999988888899
Q ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCC
Q 029437 86 AKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNV 165 (193)
Q Consensus 86 ~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (193)
+.+|++++|+|++++++++....++..+.......+.|+++|+||+|+......+++.+.+..... ..
T Consensus 82 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~------------~~ 149 (187)
T 1zj6_A 82 TNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSI------------KD 149 (187)
T ss_dssp TTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGC------------CS
T ss_pred cCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhh------------cC
Confidence 999999999999999999999999999876544568999999999999876677777776654321 01
Q ss_pred cceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 166 RPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 166 ~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
..+.+++|||++|.|+++++++|.+.+
T Consensus 150 ~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (187)
T 1zj6_A 150 HQWHIQACCALTGEGLCQGLEWMMSRL 176 (187)
T ss_dssp SCEEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred CCcEEEEccCCCCcCHHHHHHHHHHHH
Confidence 346899999999999999999998765
No 7
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=100.00 E-value=2.6e-33 Score=194.18 Aligned_cols=164 Identities=36% Similarity=0.610 Sum_probs=142.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEE
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVD 96 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d 96 (193)
..+.++|+++|++|+|||||++++.+..+....||.+.....+.+++..+.+|||||++.+...+..+++.+|++++|+|
T Consensus 4 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d 83 (171)
T 1upt_A 4 MTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVD 83 (171)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccceEEEEECCEEEEEEECCCChhhhHHHHHHhccCCEEEEEEE
Confidence 45678999999999999999999999998888888888888888899999999999999999988899999999999999
Q ss_pred CCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeee
Q 029437 97 AYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIV 176 (193)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 176 (193)
+++++++.....++..++......+.|+++++||+|+.......++.+.+..... ....+.+++|||+
T Consensus 84 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~Sa~ 151 (171)
T 1upt_A 84 SCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPAL------------KDRKWQIFKTSAT 151 (171)
T ss_dssp TTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGC------------TTSCEEEEECCTT
T ss_pred CCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhc------------cCCceEEEECcCC
Confidence 9999999999999998877655578999999999999877667777777664431 0134689999999
Q ss_pred cCCChhhHHHhhhhhc
Q 029437 177 RKMGYGDGFKWLSQYI 192 (193)
Q Consensus 177 ~g~gv~el~~~i~~~~ 192 (193)
+|.|+++++++|.+.+
T Consensus 152 ~~~gi~~l~~~l~~~i 167 (171)
T 1upt_A 152 KGTGLDEAMEWLVETL 167 (171)
T ss_dssp TCTTHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHH
Confidence 9999999999998765
No 8
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=2.1e-33 Score=196.86 Aligned_cols=176 Identities=36% Similarity=0.573 Sum_probs=144.7
Q ss_pred HHHHHHHHhhCCCCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhh
Q 029437 5 DWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDY 84 (193)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~ 84 (193)
.++...+...-..++.++|+++|++|||||||++++.+.++....+|.+.....+.+++..+.+|||||+..+...+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~ 82 (183)
T 1moz_A 3 NIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCY 82 (183)
T ss_dssp HHHHHHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEEEEEETTEEEEEEEEC----CCTTGGGT
T ss_pred hHHHHHHHHhcCCCCccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccceEEEEECCEEEEEEECCCCHhHHHHHHHH
Confidence 45556655443226789999999999999999999999888778889888888888889999999999999988888888
Q ss_pred cccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCC
Q 029437 85 YAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSN 164 (193)
Q Consensus 85 ~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (193)
+..+|++++|+|++++++++....++..++......+.|+++++||+|+......+++.+.++.... .
T Consensus 83 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~------------~ 150 (183)
T 1moz_A 83 YADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVEL------------K 150 (183)
T ss_dssp TTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTC------------C
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccc------------c
Confidence 9999999999999999999999999999876555578999999999999877677777777664431 1
Q ss_pred CcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 165 VRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 165 ~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
...+++++|||++|.|+++++++|.+.+
T Consensus 151 ~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 178 (183)
T 1moz_A 151 DRSWSIVASSAIKGEGITEGLDWLIDVI 178 (183)
T ss_dssp SSCEEEEEEBGGGTBTHHHHHHHHHHHH
T ss_pred CCceEEEEccCCCCcCHHHHHHHHHHHH
Confidence 1346899999999999999999998765
No 9
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=100.00 E-value=1.9e-33 Score=198.88 Aligned_cols=165 Identities=35% Similarity=0.583 Sum_probs=138.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEE
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVD 96 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d 96 (193)
.++.++|+++|++|||||||++++.+..+....||.+.....+.+.+..+.+|||||++.+...+..+++.+|++++|+|
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D 105 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 105 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CTTHHHHHHTCCEEEEEEE
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCccccCCcCceeEEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 45679999999999999999999999888877788888778888899999999999999998888889999999999999
Q ss_pred CCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeee
Q 029437 97 AYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIV 176 (193)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 176 (193)
+++++++.....++..++......+.|+++|+||+|+......+++.+.++.... ....+.+++|||+
T Consensus 106 ~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~------------~~~~~~~~~~SA~ 173 (192)
T 2b6h_A 106 SNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHL------------RSRTWYVQATCAT 173 (192)
T ss_dssp TTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGC------------SSCCEEEEECBTT
T ss_pred CCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccc------------cCCceEEEECcCC
Confidence 9999999999999999877655678999999999999876667777777665431 1134679999999
Q ss_pred cCCChhhHHHhhhhhcC
Q 029437 177 RKMGYGDGFKWLSQYIK 193 (193)
Q Consensus 177 ~g~gv~el~~~i~~~~~ 193 (193)
+|.|++++|++|.+.+.
T Consensus 174 ~g~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 174 QGTGLYDGLDWLSHELS 190 (192)
T ss_dssp TTBTHHHHHHHHHHHTT
T ss_pred CcCCHHHHHHHHHHHHh
Confidence 99999999999988763
No 10
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=100.00 E-value=3.4e-33 Score=195.76 Aligned_cols=167 Identities=29% Similarity=0.541 Sum_probs=140.1
Q ss_pred hCCCCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEE
Q 029437 14 LGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 14 ~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~ 93 (193)
.....+.++|+++|++|+|||||++++.+.++....+|.+.....+.+++..+.+|||||++.+...+..+++.+|++++
T Consensus 15 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 94 (181)
T 2h17_A 15 VPRGSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIV 94 (181)
T ss_dssp ------CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCEEEEETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEE
T ss_pred cCCCCceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 33456789999999999999999999999998777788888888888899999999999999999888899999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEe
Q 029437 94 LVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMC 173 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
|+|++++++++.+..++..++......+.|+++++||+|+......+++.+.+..... ....+.+++|
T Consensus 95 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~------------~~~~~~~~~~ 162 (181)
T 2h17_A 95 VVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSI------------KDHQWHIQAC 162 (181)
T ss_dssp EEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGC------------CSSCEEEEEC
T ss_pred EEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccc------------cCCceEEEEc
Confidence 9999999999999999999876544578999999999999876677777776654331 1134689999
Q ss_pred eeecCCChhhHHHhhhhhc
Q 029437 174 SIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 174 Sa~~g~gv~el~~~i~~~~ 192 (193)
||++|.|++++|++|.+.+
T Consensus 163 Sa~~g~gi~~l~~~l~~~l 181 (181)
T 2h17_A 163 CALTGEGLCQGLEWMMSRL 181 (181)
T ss_dssp BTTTTBTHHHHHHHHHTC-
T ss_pred cCCCCcCHHHHHHHHHhhC
Confidence 9999999999999998764
No 11
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=100.00 E-value=6.8e-34 Score=200.50 Aligned_cols=163 Identities=37% Similarity=0.608 Sum_probs=142.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEEC
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDA 97 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~ 97 (193)
++.++|+++|++|+|||||++++.+.++....||.+.....+.+++..+.+|||||++.+...+..+++.+|++++|+|+
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~ 99 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDS 99 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCCEEEEEETTEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEET
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceEEEEEEECCEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeC
Confidence 67899999999999999999999998888888898888888888999999999999998888888888999999999999
Q ss_pred CChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeec
Q 029437 98 YDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVR 177 (193)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 177 (193)
++++++.....++..++......+.|+++|+||+|+......+++.+.+..... ....+++++|||++
T Consensus 100 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~Sa~~ 167 (189)
T 2x77_A 100 TDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSI------------MNRTWTIVKSSSKT 167 (189)
T ss_dssp TCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGC------------CSSCEEEEECCTTT
T ss_pred CCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhc------------cCCceEEEEccCCC
Confidence 999999999999999887666678999999999999877666777776654331 11346899999999
Q ss_pred CCChhhHHHhhhhhc
Q 029437 178 KMGYGDGFKWLSQYI 192 (193)
Q Consensus 178 g~gv~el~~~i~~~~ 192 (193)
|.|+++++++|.+.+
T Consensus 168 ~~gi~~l~~~l~~~i 182 (189)
T 2x77_A 168 GDGLVEGMDWLVERL 182 (189)
T ss_dssp CTTHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHH
Confidence 999999999998765
No 12
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=100.00 E-value=1.2e-32 Score=194.02 Aligned_cols=165 Identities=33% Similarity=0.534 Sum_probs=141.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEE
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLV-QHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLV 95 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~ 95 (193)
.++.++|+|+|++|+|||||++++.+..+. ...+|.+.....+...+..+.+|||||++.+...+..++..+|++++|+
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 98 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMV 98 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEE
Confidence 456899999999999999999999988876 3567888877778888999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeee
Q 029437 96 DAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSI 175 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 175 (193)
|+++++++..+..++..++......+.|+++|+||+|+......+++.+.++.... ......+++|||
T Consensus 99 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~SA 166 (188)
T 1zd9_A 99 DAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAI------------QDREICCYSISC 166 (188)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGC------------CSSCEEEEECCT
T ss_pred ECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhh------------ccCCeeEEEEEC
Confidence 99999999999999999877555578999999999999876666777766654331 113467999999
Q ss_pred ecCCChhhHHHhhhhhcC
Q 029437 176 VRKMGYGDGFKWLSQYIK 193 (193)
Q Consensus 176 ~~g~gv~el~~~i~~~~~ 193 (193)
++|.|++++|++|.+.++
T Consensus 167 ~~g~gv~~l~~~l~~~~~ 184 (188)
T 1zd9_A 167 KEKDNIDITLQWLIQHSK 184 (188)
T ss_dssp TTCTTHHHHHHHHHHTCC
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999988763
No 13
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=3.9e-33 Score=200.34 Aligned_cols=158 Identities=20% Similarity=0.230 Sum_probs=120.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCccee--EEEe--CCEEEEEEEcCChhhhHhhHHhhcccCCEE
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTSE--ELSI--GKIKFKAFDLGGHQIARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~d~v 91 (193)
.++++||+|+|++|+|||||++++..+.|.. ..||.+.... .+.. ..+.+.+|||+|+++++.+...+++.++++
T Consensus 10 P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ 89 (216)
T 4dkx_A 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAA 89 (216)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEE
T ss_pred CCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEE
Confidence 4567999999999999999999999998876 4577765432 3333 347899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCC--CCCCHHHHHHhhCCCccccCCCccccCCCCCcceE
Q 029437 92 VYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIP--YAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLE 169 (193)
Q Consensus 92 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
++|+|++++++|+++..|+..+... ..+++|+++|+||+|+. +.++.++..+.... ..+.
T Consensus 90 ilv~di~~~~Sf~~i~~~~~~i~~~-~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~-----------------~~~~ 151 (216)
T 4dkx_A 90 VVVYDITNVNSFQQTTKWIDDVRTE-RGSDVIIMLVGNKTDLADKRQVSIEEGERKAKE-----------------LNVM 151 (216)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHH-HTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------HTCE
T ss_pred EEEeecchhHHHHHHHHHHHHHHHh-cCCCCeEEEEeeccchHhcCcccHHHHhhHHHH-----------------hCCe
Confidence 9999999999999999999988643 33689999999999997 34455443222110 1246
Q ss_pred EEEeeeecCCChhhHHHhhhhhc
Q 029437 170 VFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
+++|||++|.||+++|+.|.+.+
T Consensus 152 ~~e~SAktg~nV~e~F~~i~~~i 174 (216)
T 4dkx_A 152 FIETSAKAGYNVKQLFRRVAAAL 174 (216)
T ss_dssp EEEEBTTTTBSHHHHHHHHHHHC
T ss_pred eEEEeCCCCcCHHHHHHHHHHHH
Confidence 79999999999999999998765
No 14
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.2e-32 Score=191.04 Aligned_cols=166 Identities=30% Similarity=0.556 Sum_probs=137.6
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhcCC--ccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEE
Q 029437 16 LWQKEAKILFLGLDNAGKTTLLHMLKDER--LVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 16 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~ 93 (193)
...+.++|+++|++|+|||||++++.+.. .....+|.+.....+.+++..+.+|||||++.+...+..+++.+|++++
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 96 (190)
T 2h57_A 17 RGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIF 96 (190)
T ss_dssp ----CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEEEEECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEEE
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence 34577999999999999999999999887 2345678888888888888999999999999999988899999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHcCCCC--CCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEE
Q 029437 94 LVDAYDKERFAESKKELDALLSDEAL--ANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVF 171 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (193)
|+|++++.++..+..++..++..... .+.|+++|+||+|+......+++.+.+....+ . ...+.++
T Consensus 97 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~---------~---~~~~~~~ 164 (190)
T 2h57_A 97 VIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENI---------K---DKPWHIC 164 (190)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGC---------C---SSCEEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhc---------c---CCceEEE
Confidence 99999999999999999998876544 68999999999999877677777666643220 0 1346899
Q ss_pred EeeeecCCChhhHHHhhhhhcC
Q 029437 172 MCSIVRKMGYGDGFKWLSQYIK 193 (193)
Q Consensus 172 ~~Sa~~g~gv~el~~~i~~~~~ 193 (193)
+|||++|.|++++|++|.+.++
T Consensus 165 ~~Sa~~~~gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 165 ASDAIKGEGLQEGVDWLQDQIQ 186 (190)
T ss_dssp ECBTTTTBTHHHHHHHHHHHC-
T ss_pred EccCCCCcCHHHHHHHHHHHHH
Confidence 9999999999999999988763
No 15
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=100.00 E-value=3e-32 Score=193.32 Aligned_cols=165 Identities=32% Similarity=0.594 Sum_probs=137.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcccc--CCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEE
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQH--QPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYL 94 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v 94 (193)
.....+|+|+|++|||||||++++.+..+... .+|.+.....+......+.+|||||++.+..++..+++.+|++++|
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v 93 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFV 93 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEE
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEE
Confidence 45778999999999999999999999988764 7888888888888999999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHcCCCC-------CCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcc
Q 029437 95 VDAYDKERFAESKKELDALLSDEAL-------ANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRP 167 (193)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~-------~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (193)
+|+++++++..+..++..++..... .+.|+++|+||+|+......+++.+.++....- ....
T Consensus 94 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~-----------~~~~ 162 (199)
T 4bas_A 94 VDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLM-----------GDHP 162 (199)
T ss_dssp EETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHH-----------TTSC
T ss_pred EECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhc-----------cCCe
Confidence 9999999999999999988764222 389999999999998777777777777643210 0134
Q ss_pred eEEEEeeeecCCChhhHHHhhhhhc
Q 029437 168 LEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 168 ~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
+.+++|||++|.|++++|++|.+.+
T Consensus 163 ~~~~~~Sa~~g~gv~~l~~~l~~~~ 187 (199)
T 4bas_A 163 FVIFASNGLKGTGVHEGFSWLQETA 187 (199)
T ss_dssp EEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred eEEEEeeCCCccCHHHHHHHHHHHH
Confidence 6899999999999999999998764
No 16
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.98 E-value=1.5e-31 Score=203.54 Aligned_cols=163 Identities=33% Similarity=0.592 Sum_probs=140.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEEC
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDA 97 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~ 97 (193)
++.++|+|+|++|+|||||++++.+..+....||.+.....+...+..+.+|||||++.+..+...+++.+|++|+|+|+
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~ 242 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 242 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEEEET
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCcccccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence 35679999999999999999999999988877899988888999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeec
Q 029437 98 YDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVR 177 (193)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 177 (193)
+++.++..+..++..++......++|+++|+||+|+......+++...++.... ....+.++++||++
T Consensus 243 ~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~------------~~~~~~~~~vSAk~ 310 (329)
T 3o47_A 243 NDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL------------RHRNWYIQATCATS 310 (329)
T ss_dssp TCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTC------------CSSCEEEEECBTTT
T ss_pred CchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhh------------hcCCCEEEEEECCC
Confidence 999999999999999987766679999999999999887778888888876552 12457899999999
Q ss_pred CCChhhHHHhhhhhc
Q 029437 178 KMGYGDGFKWLSQYI 192 (193)
Q Consensus 178 g~gv~el~~~i~~~~ 192 (193)
|.|++++|++|.+.+
T Consensus 311 g~gi~el~~~l~~~l 325 (329)
T 3o47_A 311 GDGLYEGLDWLSNQL 325 (329)
T ss_dssp TBTHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHH
Confidence 999999999998875
No 17
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.97 E-value=8.3e-31 Score=209.73 Aligned_cols=165 Identities=33% Similarity=0.572 Sum_probs=147.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEE
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVD 96 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d 96 (193)
.+..++|+++|.+|+|||||++++.+.++....||.+.....+.+.++.+.+|||+|++.++.++..++..+|++|+|+|
T Consensus 319 ~~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~~~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D 398 (497)
T 3lvq_E 319 SNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVD 398 (497)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEESSSCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEE
T ss_pred cccceeEEEEcCCCCCHHHHHHHHhcCCCCCcCCccceeEEEEEeCCEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEE
Confidence 35679999999999999999999999998888899999999999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeee
Q 029437 97 AYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIV 176 (193)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 176 (193)
+++++++..+..++..++......++|+++|+||+|+.......++.+.++.... ....+.+++|||+
T Consensus 399 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~SA~ 466 (497)
T 3lvq_E 399 CADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRI------------RDRNWYVQPSCAT 466 (497)
T ss_dssp TTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHHHHHHHTTCTTC------------CSSCEEEEECBTT
T ss_pred CcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCHHHHHHHhchhhh------------hcCCeEEEEEECC
Confidence 9999999999999999987666679999999999999877777888887775541 1145689999999
Q ss_pred cCCChhhHHHhhhhhcC
Q 029437 177 RKMGYGDGFKWLSQYIK 193 (193)
Q Consensus 177 ~g~gv~el~~~i~~~~~ 193 (193)
+|.|++++|++|.+.++
T Consensus 467 ~g~gi~~l~~~l~~~~~ 483 (497)
T 3lvq_E 467 SGDGLYEGLTWLTSNYK 483 (497)
T ss_dssp TTBTHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999998764
No 18
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.97 E-value=1.1e-30 Score=180.11 Aligned_cols=156 Identities=19% Similarity=0.176 Sum_probs=102.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccee-EEEe--CCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEE
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSE-ELSI--GKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVD 96 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~-~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d 96 (193)
.+||+++|++|+|||||++++.+..+....++.+.... .+.. ....+.+||+||+..+......++..+|++++|+|
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYS 81 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEE
Confidence 57999999999999999999998776655555444322 2233 34678999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC--CCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEee
Q 029437 97 AYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA--ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCS 174 (193)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 174 (193)
++++++++.+..|+..+.......+.|+++++||+|+... ...++...... . ..+++++||
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-~----------------~~~~~~~~S 144 (166)
T 3q72_A 82 VTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAV-V----------------FDCKFIETS 144 (166)
T ss_dssp TTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHH-H----------------TTCEEEECB
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHH-H----------------hCCcEEEec
Confidence 9999999999999999887666678999999999999743 23332221111 1 125789999
Q ss_pred eecCCChhhHHHhhhhhc
Q 029437 175 IVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 175 a~~g~gv~el~~~i~~~~ 192 (193)
|++|.|++++|++|.+.+
T Consensus 145 a~~~~gi~~l~~~l~~~~ 162 (166)
T 3q72_A 145 AALHHNVQALFEGVVRQI 162 (166)
T ss_dssp GGGTBSHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHH
Confidence 999999999999998865
No 19
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.97 E-value=5.7e-30 Score=183.76 Aligned_cols=177 Identities=23% Similarity=0.262 Sum_probs=123.4
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeC---CEEEEEEEcCChhhhHh-hHHhhcccCCEE
Q 029437 16 LWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIG---KIKFKAFDLGGHQIARR-VWKDYYAKVDAV 91 (193)
Q Consensus 16 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~---~~~~~~~D~~G~~~~~~-~~~~~~~~~d~v 91 (193)
.....++|+++|++|+|||||++++.+..+....++.......+.++ ...+.+|||||+..+.. ++..+++.+|++
T Consensus 3 ~~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 82 (214)
T 2fh5_B 3 RKSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAV 82 (214)
T ss_dssp -----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEE
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEEEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEE
Confidence 34567899999999999999999999998887666666666566665 67899999999999987 778889999999
Q ss_pred EEEEECCChh-hHHHHHHHHHHHHcC--CCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCcc---------ccCCCccc
Q 029437 92 VYLVDAYDKE-RFAESKKELDALLSD--EALANVPFLVLGNKIDIPYAASEEELRYHLGLSNF---------TTGKGKVN 159 (193)
Q Consensus 92 l~v~d~~~~~-~~~~~~~~~~~~~~~--~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~---------~~~~~~~~ 159 (193)
++|+|+++.. ++....+++...+.. ....+.|+++|+||+|+......+++.+.+....- ..+.....
T Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~ 162 (214)
T 2fh5_B 83 VFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSS 162 (214)
T ss_dssp EEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC----------
T ss_pred EEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCc
Confidence 9999999854 466677777666432 22357999999999999866555544333321100 00000001
Q ss_pred cCCCC-------------CcceEEEEeeeecC------CChhhHHHhhhhhc
Q 029437 160 LADSN-------------VRPLEVFMCSIVRK------MGYGDGFKWLSQYI 192 (193)
Q Consensus 160 ~~~~~-------------~~~~~~~~~Sa~~g------~gv~el~~~i~~~~ 192 (193)
+.+.. ...+.+++|||++| .|++++|++|.+.+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~ 214 (214)
T 2fh5_B 163 TAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA 214 (214)
T ss_dssp --CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred cccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence 11000 01678999999999 99999999998754
No 20
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.97 E-value=7.4e-30 Score=177.36 Aligned_cols=158 Identities=16% Similarity=0.140 Sum_probs=112.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcc--eeEEEeCC--EEEEEEEcCChhh--hHhhHHhhcccCCEE
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPT--SEELSIGK--IKFKAFDLGGHQI--ARRVWKDYYAKVDAV 91 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~G~~~--~~~~~~~~~~~~d~v 91 (193)
+..++|+++|++|+|||||++++.+..+....++.+.. ...+..++ ..+.+|||||+.. +..+...+++.+|++
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence 45689999999999999999999998877655555544 33444544 5789999999987 455667788899999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC--CCHHHHHHhhCCCccccCCCccccCCCCCcceE
Q 029437 92 VYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA--ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLE 169 (193)
Q Consensus 92 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
++|+|++++.+++.+..|+..+.......+.|+++|+||+|+... ...++...... . ..++
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~-~----------------~~~~ 144 (175)
T 2nzj_A 82 VIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAV-V----------------FDCK 144 (175)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHH-H----------------HTSE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHH-H----------------cCCe
Confidence 999999999999999988888766544568999999999999743 33333221110 0 1247
Q ss_pred EEEeeeecCCChhhHHHhhhhhc
Q 029437 170 VFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
+++|||++|.|++++|++|.+.+
T Consensus 145 ~~~~Sa~~g~gi~~l~~~l~~~~ 167 (175)
T 2nzj_A 145 FIETSATLQHNVAELFEGVVRQL 167 (175)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998764
No 21
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.97 E-value=2.4e-30 Score=178.44 Aligned_cols=158 Identities=17% Similarity=0.226 Sum_probs=122.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCccee-EEEe--CCEEEEEEEcCChhhhHhhHHhhcccCCEEEEE
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTSE-ELSI--GKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYL 94 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v 94 (193)
+.++|+++|++|||||||++++.+..+.. ..+|.+.... .+.. ....+.+||+||+..+......+++.+|++++|
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 56899999999999999999999887654 3344443222 2222 356899999999999988888899999999999
Q ss_pred EECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC--CCHHHHHHhhCCCccccCCCccccCCCCCcceEEEE
Q 029437 95 VDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA--ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFM 172 (193)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (193)
+|++++.+++.+..++..+.......+.|+++++||+|+... ...++....... . ...++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~---------------~~~~~~~ 145 (167)
T 1c1y_A 82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQ-W---------------CNCAFLE 145 (167)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHH-T---------------TSCEEEE
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHH-c---------------cCCcEEE
Confidence 999999999998888887765444568999999999999732 233333222111 1 1357899
Q ss_pred eeeecCCChhhHHHhhhhhc
Q 029437 173 CSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 173 ~Sa~~g~gv~el~~~i~~~~ 192 (193)
+||++|.|+++++++|.+.+
T Consensus 146 ~Sa~~~~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 146 SSAKSKINVNEIFYDLVRQI 165 (167)
T ss_dssp CBTTTTBSHHHHHHHHHHHH
T ss_pred ecCCCCCCHHHHHHHHHHHH
Confidence 99999999999999998765
No 22
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.97 E-value=1.8e-29 Score=177.38 Aligned_cols=156 Identities=20% Similarity=0.212 Sum_probs=121.5
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcceeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEEE
Q 029437 16 LWQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAVV 92 (193)
Q Consensus 16 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~vl 92 (193)
..+..+||+++|++|||||||++++.+..+.. ..+|.+.....+.+.+ +.+.+|||+|++.+. +++.+|+++
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i 90 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVV 90 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEE
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEE
Confidence 35678999999999999999999999988765 3455443444555555 677889999998776 567799999
Q ss_pred EEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCC----CCCCHHHHHHhhCCCccccCCCccccCCCCCcce
Q 029437 93 YLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIP----YAASEEELRYHLGLSNFTTGKGKVNLADSNVRPL 168 (193)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (193)
+|+|++++.+++.+..|+..+.......+.|+++++||+|+. .....++...... .. ..+
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~-~~---------------~~~ 154 (184)
T 3ihw_A 91 FVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLST-DL---------------KRC 154 (184)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHH-HT---------------TTC
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHH-Hc---------------CCC
Confidence 999999999999999998888765555689999999999984 3333333322221 11 225
Q ss_pred EEEEeeeecCCChhhHHHhhhhhc
Q 029437 169 EVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 169 ~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
.+++|||++|.|++++|++|.+.+
T Consensus 155 ~~~e~Sa~~~~gv~~lf~~l~~~i 178 (184)
T 3ihw_A 155 TYYETCATYGLNVERVFQDVAQKV 178 (184)
T ss_dssp EEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred eEEEecCCCCCCHHHHHHHHHHHH
Confidence 789999999999999999998764
No 23
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.97 E-value=1.4e-29 Score=174.99 Aligned_cols=158 Identities=20% Similarity=0.273 Sum_probs=123.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEE
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~v 91 (193)
.++.++|+++|++|+|||||++++.+..+.. ..++.+... ..+... ...+.+||+||++.+......+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA 82 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence 3567899999999999999999999887665 334554332 333333 57899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceE
Q 029437 92 VYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLE 169 (193)
Q Consensus 92 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
++|+|++++.++..+..|+..+... ..++.|+++++||+|+.. ....++....... ..+.
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~ 144 (170)
T 1r2q_A 83 IVVYDITNEESFARAKNWVKELQRQ-ASPNIVIALSGNKADLANKRAVDFQEAQSYADD-----------------NSLL 144 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------TTCE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECccCccccccCHHHHHHHHHH-----------------cCCe
Confidence 9999999999999998888877543 236899999999999963 2333333222111 1257
Q ss_pred EEEeeeecCCChhhHHHhhhhhc
Q 029437 170 VFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
++++||++|.|+++++++|.+.+
T Consensus 145 ~~~~Sa~~g~gi~~l~~~i~~~~ 167 (170)
T 1r2q_A 145 FMETSAKTSMNVNEIFMAIAKKL 167 (170)
T ss_dssp EEECCTTTCTTHHHHHHHHHHTS
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998876
No 24
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.97 E-value=1.5e-29 Score=174.45 Aligned_cols=158 Identities=20% Similarity=0.298 Sum_probs=121.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCcce-eEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEEEE
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQH-QPTQYPTS-EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~~-~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~ 93 (193)
++.++|+++|++|+|||||++++.+..+... .+|..... ..+...+ ..+.+||+||+..+......+++.+|++++
T Consensus 2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence 4568999999999999999999998886543 34443332 2334444 689999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceEEE
Q 029437 94 LVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVF 171 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (193)
|+|+++++++..+..|+..+.......+.|+++++||+|+.. ....++....... ..++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~ 144 (168)
T 1u8z_A 82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQ-----------------WNVNYV 144 (168)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------HTCEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHH-----------------cCCeEE
Confidence 999999999999988888886654446899999999999963 3333443332211 124789
Q ss_pred EeeeecCCChhhHHHhhhhhc
Q 029437 172 MCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 172 ~~Sa~~g~gv~el~~~i~~~~ 192 (193)
++||++|.|++++|++|.+.+
T Consensus 145 ~~Sa~~~~gi~~l~~~l~~~i 165 (168)
T 1u8z_A 145 ETSAKTRANVDKVFFDLMREI 165 (168)
T ss_dssp ECCTTTCTTHHHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHHHHH
Confidence 999999999999999998765
No 25
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.97 E-value=6.8e-30 Score=180.78 Aligned_cols=158 Identities=22% Similarity=0.260 Sum_probs=121.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcccc-----------CCCCCccee-----EEEeCCEEEEEEEcCChhhhHhh
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQH-----------QPTQYPTSE-----ELSIGKIKFKAFDLGGHQIARRV 80 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-----------~~t~~~~~~-----~~~~~~~~~~~~D~~G~~~~~~~ 80 (193)
....+||+++|++|||||||++.+.+...... .+|.+.... .+......+.+|||||++.+...
T Consensus 11 ~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 90 (198)
T 3t1o_A 11 REINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNAS 90 (198)
T ss_dssp TEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHH
T ss_pred cccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHH
Confidence 45679999999999999999987765443322 123222211 22233578999999999999999
Q ss_pred HHhhcccCCEEEEEEECC------ChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccC
Q 029437 81 WKDYYAKVDAVVYLVDAY------DKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTG 154 (193)
Q Consensus 81 ~~~~~~~~d~vl~v~d~~------~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 154 (193)
+..+++.+|++++|+|++ +.+++..+..|+..+ .....+.|+++|+||+|+......++..+......
T Consensus 91 ~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~--~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~---- 164 (198)
T 3t1o_A 91 RKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEY--GLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPEG---- 164 (198)
T ss_dssp HHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHT--TCCTTSSCEEEEEECTTSTTCCCHHHHHHHHCTTC----
T ss_pred HHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhh--ccccCCCCEEEEEEchhcccccCHHHHHHHHHhcC----
Confidence 999999999999999999 456677777777666 23457899999999999988777777766654322
Q ss_pred CCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 155 KGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
...+++|||++|.|++++|++|.+.+
T Consensus 165 ------------~~~~~~~Sa~~~~gv~~l~~~l~~~i 190 (198)
T 3t1o_A 165 ------------KFPVLEAVATEGKGVFETLKEVSRLV 190 (198)
T ss_dssp ------------CSCEEECBGGGTBTHHHHHHHHHHHH
T ss_pred ------------CceEEEEecCCCcCHHHHHHHHHHHH
Confidence 12789999999999999999998764
No 26
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.97 E-value=2e-29 Score=179.44 Aligned_cols=158 Identities=18% Similarity=0.241 Sum_probs=120.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCc--ceeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEE
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYP--TSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~v 91 (193)
.+..++|+++|++|+|||||++++.+..+.. ..+|.+. ....+.+++ ..+.+|||||++.+...+..+++.+|++
T Consensus 26 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 105 (201)
T 2hup_A 26 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGA 105 (201)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEE
Confidence 4567999999999999999999999888754 4455543 344555555 6899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcce-
Q 029437 92 VYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPL- 168 (193)
Q Consensus 92 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 168 (193)
++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.. ....++..+.... ..+
T Consensus 106 ilv~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~ 167 (201)
T 2hup_A 106 ILAYDITKRSSFLSVPHWIEDVRKYA-GSNIVQLLIGNKSDLSELREVSLAEAQSLAEH-----------------YDIL 167 (201)
T ss_dssp EEEEETTBHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------TTCS
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCccccccccCHHHHHHHHHH-----------------cCCC
Confidence 99999999999999888887775432 36899999999999973 3344443332211 113
Q ss_pred EEEEeeeecCCChhhHHHhhhhhc
Q 029437 169 EVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 169 ~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
.+++|||++|.|++++|++|.+.+
T Consensus 168 ~~~~~SA~~g~gi~~l~~~l~~~i 191 (201)
T 2hup_A 168 CAIETSAKDSSNVEEAFLRVATEL 191 (201)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHH
Confidence 789999999999999999998764
No 27
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.97 E-value=1.8e-29 Score=178.07 Aligned_cols=160 Identities=20% Similarity=0.220 Sum_probs=125.5
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCccee---EEEeC-----------CEEEEEEEcCChhhhHhh
Q 029437 16 LWQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTSE---ELSIG-----------KIKFKAFDLGGHQIARRV 80 (193)
Q Consensus 16 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~---~~~~~-----------~~~~~~~D~~G~~~~~~~ 80 (193)
.....++|+|+|++|+|||||++++.+..+.. ..+|.+.... .+... ...+.+|||||++.+...
T Consensus 7 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 86 (195)
T 3bc1_A 7 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSL 86 (195)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHH
T ss_pred ccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHH
Confidence 35667999999999999999999999887654 4456554433 33333 468999999999999999
Q ss_pred HHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCcc
Q 029437 81 WKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKV 158 (193)
Q Consensus 81 ~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~ 158 (193)
...+++.+|++++|+|++++.++..+..|+..+.......+.|+++++||+|+.. ....++..+....
T Consensus 87 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~---------- 156 (195)
T 3bc1_A 87 TTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEK---------- 156 (195)
T ss_dssp HHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHH----------
T ss_pred HHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHH----------
Confidence 9999999999999999999999999888888876654446899999999999974 3333333222110
Q ss_pred ccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 159 NLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 159 ~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
..++++++||++|.|++++|++|.+.+
T Consensus 157 -------~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 183 (195)
T 3bc1_A 157 -------YGIPYFETSAANGTNISHAIEMLLDLI 183 (195)
T ss_dssp -------HTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -------cCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 113579999999999999999998754
No 28
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=3.7e-29 Score=176.77 Aligned_cols=158 Identities=20% Similarity=0.213 Sum_probs=124.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCccee--EEEe--CCEEEEEEEcCChhhhHhhHHhhcccCCEE
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTSE--ELSI--GKIKFKAFDLGGHQIARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~d~v 91 (193)
+++.++|+|+|++|+|||||++++.+..+.. ..++.+.... .+.. ....+.+|||||++.+......+++.+|++
T Consensus 20 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 99 (192)
T 2fg5_A 20 AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAA 99 (192)
T ss_dssp -CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred cCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEE
Confidence 4678999999999999999999999988653 4566664432 2222 457899999999999999888999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceE
Q 029437 92 VYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLE 169 (193)
Q Consensus 92 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
++|+|++++.++..+..|+..+... ...+.|+++|+||+|+.. ....++..+.... ..+.
T Consensus 100 ilV~d~~~~~s~~~~~~~~~~i~~~-~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~ 161 (192)
T 2fg5_A 100 VIVYDITKQDSFYTLKKWVKELKEH-GPENIVMAIAGNKCDLSDIREVPLKDAKEYAES-----------------IGAI 161 (192)
T ss_dssp EEEEETTCTHHHHHHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHT-----------------TTCE
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHHHHHH-----------------cCCE
Confidence 9999999999999988888777543 235899999999999973 3344443333211 1257
Q ss_pred EEEeeeecCCChhhHHHhhhhhc
Q 029437 170 VFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
+++|||++|.|+++++++|.+.+
T Consensus 162 ~~~~Sa~~~~gi~~l~~~l~~~i 184 (192)
T 2fg5_A 162 VVETSAKNAINIEELFQGISRQI 184 (192)
T ss_dssp EEECBTTTTBSHHHHHHHHHHTC
T ss_pred EEEEeCCCCcCHHHHHHHHHHHH
Confidence 89999999999999999998865
No 29
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.97 E-value=5.7e-29 Score=173.84 Aligned_cols=160 Identities=22% Similarity=0.294 Sum_probs=124.2
Q ss_pred CCCCCccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCcc--eeEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCC
Q 029437 15 GLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQH-QPTQYPT--SEELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVD 89 (193)
Q Consensus 15 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~--~~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d 89 (193)
+..+..++|+++|++|+|||||++++.+..+... .++.+.. ...+... ...+.+|||||++.+...+..+++.+|
T Consensus 7 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 86 (181)
T 2efe_B 7 GNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA 86 (181)
T ss_dssp ---CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCS
T ss_pred CCCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCC
Confidence 3456779999999999999999999998887653 3455443 3334444 468999999999999998889999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC--CCHHHHHHhhCCCccccCCCccccCCCCCcc
Q 029437 90 AVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA--ASEEELRYHLGLSNFTTGKGKVNLADSNVRP 167 (193)
Q Consensus 90 ~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (193)
++++|+|++++.+++.+..|+..+... ..++.|+++++||+|+... ...++..+.... ..
T Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~ 148 (181)
T 2efe_B 87 AAIIVFDVTNQASFERAKKWVQELQAQ-GNPNMVMALAGNKSDLLDARKVTAEDAQTYAQE-----------------NG 148 (181)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHH-----------------TT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECCcccccccCCHHHHHHHHHH-----------------cC
Confidence 999999999999999988888887653 2358999999999999642 233333332211 12
Q ss_pred eEEEEeeeecCCChhhHHHhhhhhc
Q 029437 168 LEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 168 ~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
++++++||++|.|++++|++|.+.+
T Consensus 149 ~~~~~~Sa~~g~gi~~l~~~l~~~~ 173 (181)
T 2efe_B 149 LFFMETSAKTATNVKEIFYEIARRL 173 (181)
T ss_dssp CEEEECCSSSCTTHHHHHHHHHHTC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4789999999999999999998865
No 30
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.97 E-value=1e-29 Score=175.05 Aligned_cols=157 Identities=18% Similarity=0.262 Sum_probs=122.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCc-ceeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEEEEE
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQH-QPTQYP-TSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAVVYL 94 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~t~~~-~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v 94 (193)
++++|+++|++|+|||||++++.+..+... .++... ....+...+ ..+.+|||||++.+..+...+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 568999999999999999999998876643 334332 233344444 5699999999999999888899999999999
Q ss_pred EECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEE
Q 029437 95 VDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFM 172 (193)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (193)
+|++++.+++.+..++..+.......+.|+++++||+|+.. ....++...... . ..+++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-~----------------~~~~~~~ 144 (167)
T 1kao_A 82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAE-E----------------WGCPFME 144 (167)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHH-H----------------HTSCEEE
T ss_pred EeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHH-H----------------hCCCEEE
Confidence 99999999999999988887655556899999999999863 222222221111 0 1135799
Q ss_pred eeeecCCChhhHHHhhhhhc
Q 029437 173 CSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 173 ~Sa~~g~gv~el~~~i~~~~ 192 (193)
+||++|.|+++++++|.+.+
T Consensus 145 ~Sa~~~~gi~~l~~~l~~~~ 164 (167)
T 1kao_A 145 TSAKSKTMVDELFAEIVRQM 164 (167)
T ss_dssp ECTTCHHHHHHHHHHHHHHH
T ss_pred ecCCCCcCHHHHHHHHHHHH
Confidence 99999999999999998765
No 31
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.97 E-value=2.1e-29 Score=175.41 Aligned_cols=160 Identities=19% Similarity=0.269 Sum_probs=123.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEE
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPT--SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~v 91 (193)
....++|+++|++|+|||||++++.+..+.. ..++.+.. ...+..++ ..+.+|||||++.+......+++.+|++
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 83 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC 83 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence 4567899999999999999999999887654 34555543 33444554 6899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHcC---CCCCCCcEEEEEeCCCCCC-CCCHHHHHHhhCCCccccCCCccccCCCCCcc
Q 029437 92 VYLVDAYDKERFAESKKELDALLSD---EALANVPFLVLGNKIDIPY-AASEEELRYHLGLSNFTTGKGKVNLADSNVRP 167 (193)
Q Consensus 92 l~v~d~~~~~~~~~~~~~~~~~~~~---~~~~~~pviiv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (193)
++|+|++++.++..+..|+..+... ....+.|+++++||+|+.. ....++..+.... . ..
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~-~---------------~~ 147 (177)
T 1wms_A 84 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRD-N---------------GD 147 (177)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHH-T---------------TC
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHh-c---------------CC
Confidence 9999999999998888777776432 2236889999999999973 3344444333220 1 22
Q ss_pred eEEEEeeeecCCChhhHHHhhhhhc
Q 029437 168 LEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 168 ~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
..++++||++|.|++++|++|.+.+
T Consensus 148 ~~~~~~Sa~~~~gi~~l~~~l~~~~ 172 (177)
T 1wms_A 148 YPYFETSAKDATNVAAAFEEAVRRV 172 (177)
T ss_dssp CCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ceEEEEeCCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998764
No 32
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.97 E-value=9.2e-30 Score=178.31 Aligned_cols=159 Identities=16% Similarity=0.209 Sum_probs=123.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc-eeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEEE
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPT-SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAVV 92 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~vl 92 (193)
..+.++|+++|++|+|||||++++.+..+.. ..++.... ......++ ..+.+|||||++.+......+++.+|+++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 94 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFL 94 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence 4578999999999999999999999887664 33444433 23333444 45778999999999999899999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceEE
Q 029437 93 YLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEV 170 (193)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (193)
+|+|++++.+++.+..|+..+.......+.|+++|+||+|+.. ....++...... . ..+++
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~-~----------------~~~~~ 157 (183)
T 3kkq_A 95 IVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMAT-K----------------YNIPY 157 (183)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHH-H----------------HTCCE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHH-H----------------hCCeE
Confidence 9999999999999999888886654557899999999999974 333333222211 0 11458
Q ss_pred EEeeee-cCCChhhHHHhhhhhc
Q 029437 171 FMCSIV-RKMGYGDGFKWLSQYI 192 (193)
Q Consensus 171 ~~~Sa~-~g~gv~el~~~i~~~~ 192 (193)
++|||+ +|.|++++|++|.+.+
T Consensus 158 ~~~Sa~~~~~~v~~l~~~l~~~i 180 (183)
T 3kkq_A 158 IETSAKDPPLNVDKTFHDLVRVI 180 (183)
T ss_dssp EEEBCSSSCBSHHHHHHHHHHHH
T ss_pred EEeccCCCCCCHHHHHHHHHHHH
Confidence 999999 9999999999998865
No 33
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.97 E-value=1.8e-29 Score=177.47 Aligned_cols=159 Identities=19% Similarity=0.301 Sum_probs=120.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccccC-CCCCc-ceeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEEEE
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQ-PTQYP-TSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~-~t~~~-~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~ 93 (193)
..+++|+++|++|||||||++++.+..+.... +|... ....+...+ ..+.+|||||++.+..+...++..+|++++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 35689999999999999999999988866533 33332 223334444 458889999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEe
Q 029437 94 LVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMC 173 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
|+|++++.++..+..|+..+.......+.|+++++||+|+.......+....+.... ..+++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~----------------~~~~~~~ 145 (189)
T 4dsu_A 82 VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSY----------------GIPFIET 145 (189)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHH----------------TCCEEEC
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHHc----------------CCeEEEE
Confidence 999999999999999988887655567899999999999974332222222221111 1357999
Q ss_pred eeecCCChhhHHHhhhhhc
Q 029437 174 SIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 174 Sa~~g~gv~el~~~i~~~~ 192 (193)
||++|.|++++|++|.+.+
T Consensus 146 Sa~~g~gi~~l~~~l~~~~ 164 (189)
T 4dsu_A 146 SAKTRQGVDDAFYTLVREI 164 (189)
T ss_dssp CTTTCTTHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHH
Confidence 9999999999999998764
No 34
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.97 E-value=2.5e-29 Score=173.74 Aligned_cols=156 Identities=20% Similarity=0.317 Sum_probs=122.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEEEE
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPT--SEELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~ 93 (193)
..++|+++|++|+|||||++++.+..+.. ..++.+.. ...+..+ ...+.+||+||++.+......+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 46899999999999999999999888664 44555543 3334444 3689999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC-----CCHHHHHHhhCCCccccCCCccccCCCCCcce
Q 029437 94 LVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA-----ASEEELRYHLGLSNFTTGKGKVNLADSNVRPL 168 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (193)
|+|++++.++..+..|+..+.... ..+.|+++++||+|+... ...++...... . ..+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~-~----------------~~~ 143 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQA-SKDIIIALVGNKIDXLQEGGERKVAREEGEKLAE-E----------------KGL 143 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHH-H----------------HTC
T ss_pred EEecCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCccccccccCCCHHHHHHHHH-H----------------cCC
Confidence 999999999999988888776543 368999999999999743 12222111110 0 124
Q ss_pred EEEEeeeecCCChhhHHHhhhhhc
Q 029437 169 EVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 169 ~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
.++++||++|.|++++|++|.+.+
T Consensus 144 ~~~~~Sa~~~~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 144 LFFETSAKTGENVNDVFLGIGEKI 167 (170)
T ss_dssp EEEECCTTTCTTHHHHHHHHHTTS
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHH
Confidence 789999999999999999998876
No 35
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.96 E-value=2.7e-29 Score=173.62 Aligned_cols=156 Identities=18% Similarity=0.207 Sum_probs=111.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcccc---CCCCCcceeEEEeCC--EEEEEEEcCChhhhHh-hHHhhcccCCEEEE
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKDERLVQH---QPTQYPTSEELSIGK--IKFKAFDLGGHQIARR-VWKDYYAKVDAVVY 93 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~---~~t~~~~~~~~~~~~--~~~~~~D~~G~~~~~~-~~~~~~~~~d~vl~ 93 (193)
.++|+++|++|+|||||++++.+..+... .++.......+...+ ..+.+||+||+..+.. +...+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 37999999999999999999987665432 223334444445544 6788999999988876 55667788999999
Q ss_pred EEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCC--CCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEE
Q 029437 94 LVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIP--YAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVF 171 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (193)
|+|++++++++.+..|+..+.......++|+++++||+|+. .....++....... ..++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~ 144 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGT-----------------LSCKHI 144 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------TTCEEE
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHH-----------------cCCcEE
Confidence 99999999999999999988765555689999999999997 33343333222211 124789
Q ss_pred EeeeecCCChhhHHHhhhhhc
Q 029437 172 MCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 172 ~~Sa~~g~gv~el~~~i~~~~ 192 (193)
+|||++|.|++++|++|.+.+
T Consensus 145 ~~Sa~~~~~v~~l~~~l~~~i 165 (169)
T 3q85_A 145 ETSAALHHNTRELFEGAVRQI 165 (169)
T ss_dssp ECBTTTTBSHHHHHHHHHHHH
T ss_pred EecCccCCCHHHHHHHHHHHH
Confidence 999999999999999998865
No 36
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.96 E-value=6e-29 Score=174.50 Aligned_cols=158 Identities=20% Similarity=0.260 Sum_probs=123.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCc--ceeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEE
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYP--TSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~v 91 (193)
.+..++|+++|++|||||||++++.+..+.. ..++.+. ....+..++ ..+.+|||||++.+...+..+++.+|++
T Consensus 7 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 86 (186)
T 2bme_A 7 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGA 86 (186)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEE
Confidence 4567999999999999999999999888764 3445443 234444554 6899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceE
Q 029437 92 VYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLE 169 (193)
Q Consensus 92 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
++|+|++++.+++.+..|+..+... ...+.|+++++||+|+.. .....+....... ..+.
T Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~ 148 (186)
T 2bme_A 87 LLVYDITSRETYNALTNWLTDARML-ASQNIVIILCGNKKDLDADREVTFLEASRFAQE-----------------NELM 148 (186)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------TTCE
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHHHH-----------------cCCE
Confidence 9999999999999888888776442 235899999999999963 3333333222111 1257
Q ss_pred EEEeeeecCCChhhHHHhhhhhc
Q 029437 170 VFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
+++|||++|.|++++|++|.+.+
T Consensus 149 ~~~~Sa~~~~gi~~l~~~l~~~~ 171 (186)
T 2bme_A 149 FLETSALTGENVEEAFVQCARKI 171 (186)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEecCCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998754
No 37
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.96 E-value=7.5e-29 Score=174.69 Aligned_cols=159 Identities=21% Similarity=0.282 Sum_probs=122.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCc--ceeEEEeCC--EEEEEEEcCChhhhH-hhHHhhcccCCE
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYP--TSEELSIGK--IKFKAFDLGGHQIAR-RVWKDYYAKVDA 90 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~G~~~~~-~~~~~~~~~~d~ 90 (193)
.+..++|+++|++|||||||++++.+..+.. ..++.+. ....+..++ ..+.+|||||++.+. .+...+++.+|+
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~ 96 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHA 96 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCE
Confidence 4567999999999999999999999888764 3455543 334455554 689999999999988 788888999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC--CCHHHHHHhhCCCccccCCCccccCCCCCcce
Q 029437 91 VVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA--ASEEELRYHLGLSNFTTGKGKVNLADSNVRPL 168 (193)
Q Consensus 91 vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (193)
+++|+|++++.++..+..|+..+.......+.|+++|+||+|+... ...++...... . ..+
T Consensus 97 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-~----------------~~~ 159 (189)
T 1z06_A 97 VVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFAD-T----------------HSM 159 (189)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH-H----------------TTC
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHH-H----------------cCC
Confidence 9999999999999999888888876554568999999999999632 23333222111 0 124
Q ss_pred EEEEeeeecC---CChhhHHHhhhhhc
Q 029437 169 EVFMCSIVRK---MGYGDGFKWLSQYI 192 (193)
Q Consensus 169 ~~~~~Sa~~g---~gv~el~~~i~~~~ 192 (193)
.++++||++| .|++++|++|.+.+
T Consensus 160 ~~~~~Sa~~~~~~~~i~~l~~~l~~~i 186 (189)
T 1z06_A 160 PLFETSAKNPNDNDHVEAIFMTLAHKL 186 (189)
T ss_dssp CEEECCSSSGGGGSCHHHHHHHHC---
T ss_pred EEEEEeCCcCCcccCHHHHHHHHHHHH
Confidence 6899999999 99999999998765
No 38
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.96 E-value=2.4e-29 Score=175.31 Aligned_cols=159 Identities=18% Similarity=0.224 Sum_probs=121.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCC--cceeEEEeCC---EEEEEEEcCChhhhHhhHHhhcccCCE
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQY--PTSEELSIGK---IKFKAFDLGGHQIARRVWKDYYAKVDA 90 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~---~~~~~~D~~G~~~~~~~~~~~~~~~d~ 90 (193)
.++.++|+++|++|||||||++++.+..+.. ..+|.+ .....+.+.+ ..+.+|||||++.+...+..+++.+|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 4677999999999999999999999888754 345555 3445566654 799999999999998888999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHcCCC-CCCCc-EEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCc
Q 029437 91 VVYLVDAYDKERFAESKKELDALLSDEA-LANVP-FLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVR 166 (193)
Q Consensus 91 vl~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p-viiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (193)
+++|+|++++.+++.+..|+..+..... ..+.| +++++||+|+.. ....++...... . .
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~-~----------------~ 145 (178)
T 2hxs_A 83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQ-E----------------N 145 (178)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHH-H----------------H
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHH-H----------------c
Confidence 9999999999999888877776643210 12445 899999999973 233333222111 0 1
Q ss_pred ceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 167 PLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 167 ~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
.+++++|||++|.|++++|++|.+.+
T Consensus 146 ~~~~~~~Sa~~~~gi~~l~~~l~~~~ 171 (178)
T 2hxs_A 146 GFSSHFVSAKTGDSVFLCFQKVAAEI 171 (178)
T ss_dssp TCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCHHHHHHHHHHHH
Confidence 24689999999999999999998764
No 39
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.96 E-value=4.4e-29 Score=172.56 Aligned_cols=158 Identities=20% Similarity=0.223 Sum_probs=123.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEE
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~v 91 (193)
.++.++|+++|++|+|||||++++.+..+.. ..++.+... ..+... ...+.+|||||++.+......+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~ 82 (170)
T 1z0j_A 3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA 82 (170)
T ss_dssp SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence 4567999999999999999999999988654 345555432 333444 37899999999999998888899999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC--CCHHHHHHhhCCCccccCCCccccCCCCCcceE
Q 029437 92 VYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA--ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLE 169 (193)
Q Consensus 92 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
++|+|++++.++..+..|+..+.. ...++.|+++++||+|+... ...++...... . ...+
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~l~~-~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~-~----------------~~~~ 144 (170)
T 1z0j_A 83 IIVYDITKEETFSTLKNWVRELRQ-HGPPSIVVAIAGNKCDLTDVREVMERDAKDYAD-S----------------IHAI 144 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHH-HSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHH-H----------------TTCE
T ss_pred EEEEECcCHHHHHHHHHHHHHHHH-hCCCCCcEEEEEECCccccccccCHHHHHHHHH-H----------------cCCE
Confidence 999999999999888887777654 33468999999999999732 22333222111 0 1257
Q ss_pred EEEeeeecCCChhhHHHhhhhhc
Q 029437 170 VFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
++++||++|.|+++++++|.+.+
T Consensus 145 ~~~~Sa~~~~~i~~l~~~i~~~i 167 (170)
T 1z0j_A 145 FVETSAKNAININELFIEISRRI 167 (170)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHC
T ss_pred EEEEeCCCCcCHHHHHHHHHHHH
Confidence 89999999999999999998875
No 40
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.96 E-value=4e-29 Score=175.31 Aligned_cols=160 Identities=19% Similarity=0.280 Sum_probs=124.3
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCcce-eEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEE
Q 029437 16 LWQKEAKILFLGLDNAGKTTLLHMLKDERLVQH-QPTQYPTS-EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAV 91 (193)
Q Consensus 16 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~~-~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~v 91 (193)
..+..++|+++|++|+|||||++++.+..+... .++..... ..+...+ ..+.+|||||+..+...+..++..+|++
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 93 (187)
T 2a9k_A 14 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF 93 (187)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEE
Confidence 346779999999999999999999998886543 33443322 3344444 5899999999999999989999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceE
Q 029437 92 VYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLE 169 (193)
Q Consensus 92 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
++|+|++++.++..+..|+..+.......++|+++|+||+|+.. ....++..+.... ..++
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~ 156 (187)
T 2a9k_A 94 LCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQ-----------------WNVN 156 (187)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------TTCE
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHH-----------------cCCe
Confidence 99999999999999988888886654446899999999999963 3334443333211 1247
Q ss_pred EEEeeeecCCChhhHHHhhhhhc
Q 029437 170 VFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
++++||++|.|++++|++|.+.+
T Consensus 157 ~~~~Sa~~~~gi~~l~~~l~~~i 179 (187)
T 2a9k_A 157 YVETSAKTRANVDKVFFDLMREI 179 (187)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998764
No 41
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.96 E-value=1.7e-29 Score=176.72 Aligned_cols=158 Identities=19% Similarity=0.217 Sum_probs=121.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc-eeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEEEE
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPT-SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~ 93 (193)
...++|+++|++|+|||||++++.+..+.. ..+|.+.. ...+..++ ..+.+|||||++.+......+++.+|++++
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~ 83 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL 83 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEE
Confidence 356899999999999999999999877654 33555443 23334444 678999999999998888888999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceEEE
Q 029437 94 LVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVF 171 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (193)
|+|++++++++.+..|+..+.......+.|+++|+||+|+.. ....++....... ..++++
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~ 146 (181)
T 3t5g_A 84 VYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAES-----------------WNAAFL 146 (181)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHH-----------------TTCEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHH-----------------hCCcEE
Confidence 999999999999999988887766667899999999999963 2333333222211 124689
Q ss_pred EeeeecCCChhhHHHhhhhhc
Q 029437 172 MCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 172 ~~Sa~~g~gv~el~~~i~~~~ 192 (193)
++||++|.|++++|++|.+.+
T Consensus 147 ~~Sa~~~~~v~~l~~~l~~~~ 167 (181)
T 3t5g_A 147 ESSAKENQTAVDVFRRIILEA 167 (181)
T ss_dssp ECCTTSHHHHHHHHHHHHHHH
T ss_pred EEecCCCCCHHHHHHHHHHHH
Confidence 999999999999999998764
No 42
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.96 E-value=9.3e-30 Score=181.10 Aligned_cols=158 Identities=19% Similarity=0.182 Sum_probs=119.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCcce---eEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEE
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQH-QPTQYPTS---EELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~~---~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~ 93 (193)
...++|+|+|++|||||||++++.+..+... .+|.+... ..+......+.+|||||++.+......++..+|++++
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 101 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVL 101 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEEE
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEEE
Confidence 4679999999999999999999999887653 34444322 2222345789999999999998888889999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceEEE
Q 029437 94 LVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVF 171 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (193)
|+|++++.+++.+..|+..+.......++|+++|+||+|+.. .....+...... . ..+.++
T Consensus 102 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-~----------------~~~~~~ 164 (201)
T 3oes_A 102 VYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAE-S----------------WGATFM 164 (201)
T ss_dssp EEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHH-H----------------HTCEEE
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHH-H----------------hCCeEE
Confidence 999999999999999999987765667899999999999873 223222211111 1 124789
Q ss_pred EeeeecCCChhhHHHhhhhhc
Q 029437 172 MCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 172 ~~Sa~~g~gv~el~~~i~~~~ 192 (193)
++||++|.|++++|++|.+.+
T Consensus 165 ~~Sa~~~~~v~~l~~~l~~~i 185 (201)
T 3oes_A 165 ESSARENQLTQGIFTKVIQEI 185 (201)
T ss_dssp ECCTTCHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHHHHH
Confidence 999999999999999998764
No 43
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=5.8e-29 Score=175.77 Aligned_cols=158 Identities=22% Similarity=0.262 Sum_probs=124.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEEE
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPT--SEELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAVV 92 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl 92 (193)
...++|+++|++|+|||||++++.+..+.. ..++.+.. ...+... ...+.+|||||++.+......+++.+|+++
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 92 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI 92 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 456899999999999999999999888664 34555433 3334443 478999999999999988899999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC-CCHHHHHHhhCCCccccCCCccccCCCCCcceEEE
Q 029437 93 YLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA-ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVF 171 (193)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (193)
+|+|++++.++..+..|+..+.......+.|+++|+||+|+... ...++....... ..+.++
T Consensus 93 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-----------------~~~~~~ 155 (195)
T 1x3s_A 93 LVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARK-----------------HSMLFI 155 (195)
T ss_dssp EEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHH-----------------TTCEEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHH-----------------cCCEEE
Confidence 99999999999999888888866544568999999999999632 333332222111 124689
Q ss_pred EeeeecCCChhhHHHhhhhhc
Q 029437 172 MCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 172 ~~Sa~~g~gv~el~~~i~~~~ 192 (193)
++||++|.|++++|++|.+.+
T Consensus 156 ~~Sa~~~~gi~~l~~~l~~~~ 176 (195)
T 1x3s_A 156 EASAKTCDGVQCAFEELVEKI 176 (195)
T ss_dssp ECCTTTCTTHHHHHHHHHHHH
T ss_pred EecCCCCCCHHHHHHHHHHHH
Confidence 999999999999999998754
No 44
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.96 E-value=4e-29 Score=174.46 Aligned_cols=159 Identities=18% Similarity=0.268 Sum_probs=124.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCcce-eEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEEE
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQH-QPTQYPTS-EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAVV 92 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~~-~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~vl 92 (193)
....++|+++|++|+|||||++++.+..+... .+|.+... ..+..++ ..+.+|||||+..+......++..+|+++
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 85 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFL 85 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEE
Confidence 45678999999999999999999998876653 34544332 3344454 67899999999999888888999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceEE
Q 029437 93 YLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEV 170 (193)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (193)
+|+|++++.++..+..|+..++......+.|+++|+||+|+.. ....++...... . ..+.+
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-~----------------~~~~~ 148 (181)
T 2fn4_A 86 LVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGA-S----------------HHVAY 148 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHH-H----------------TTCEE
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHH-H----------------cCCeE
Confidence 9999999999999999888886655556899999999999974 233333222111 0 12578
Q ss_pred EEeeeecCCChhhHHHhhhhhc
Q 029437 171 FMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 171 ~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
+++||++|.|++++|++|.+.+
T Consensus 149 ~~~Sa~~~~gv~~l~~~l~~~~ 170 (181)
T 2fn4_A 149 FEASAKLRLNVDEAFEQLVRAV 170 (181)
T ss_dssp EECBTTTTBSHHHHHHHHHHHH
T ss_pred EEecCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998764
No 45
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=2.8e-29 Score=175.21 Aligned_cols=159 Identities=21% Similarity=0.300 Sum_probs=115.9
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhcCCcc--ccCCCCCccee--EEEeCC--EEEEEEEcCChhhhHhhHHhhcccCC
Q 029437 16 LWQKEAKILFLGLDNAGKTTLLHMLKDERLV--QHQPTQYPTSE--ELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVD 89 (193)
Q Consensus 16 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~t~~~~~~--~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d 89 (193)
..+..++|+++|++|+|||||++++.+..+. ...+|.+.... .+...+ ..+.+|||||++.+...+..++..+|
T Consensus 6 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d 85 (180)
T 2g6b_A 6 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAH 85 (180)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCS
T ss_pred cCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCC
Confidence 3567899999999999999999999998875 34456555433 234443 58999999999999998889999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC--CCHHHHHHhhCCCccccCCCccccCCCCCcc
Q 029437 90 AVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA--ASEEELRYHLGLSNFTTGKGKVNLADSNVRP 167 (193)
Q Consensus 90 ~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (193)
++++|+|++++.+++.+..|+..+..... .+.|+++++||+|+... ...++...... . ..
T Consensus 86 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-~----------------~~ 147 (180)
T 2g6b_A 86 ALLLLYDVTNKASFDNIQAWLTEIHEYAQ-HDVALMLLGNKVDSAHERVVKREDGEKLAK-E----------------YG 147 (180)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECCSTTSCCCSCHHHHHHHHH-H----------------HT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEECcccCcccccCHHHHHHHHH-H----------------cC
Confidence 99999999999999888888877754322 58999999999999743 23333222111 0 12
Q ss_pred eEEEEeeeecCCChhhHHHhhhhhc
Q 029437 168 LEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 168 ~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
+.++++||++|.|++++|++|.+.+
T Consensus 148 ~~~~~~Sa~~~~gi~~l~~~l~~~~ 172 (180)
T 2g6b_A 148 LPFMETSAKTGLNVDLAFTAIAKEL 172 (180)
T ss_dssp CCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999998764
No 46
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.96 E-value=8.2e-29 Score=172.73 Aligned_cols=155 Identities=14% Similarity=0.178 Sum_probs=117.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcc-eeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEEEE
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPT-SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~-~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~ 93 (193)
.++.+||+++|++|||||||++++.+..+....||.+.. ...+..++ ..+.+|||||++. ..+++.+|++++
T Consensus 4 ~~~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~il 78 (178)
T 2iwr_A 4 SIPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIF 78 (178)
T ss_dssp CCCEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEE
Confidence 356799999999999999999999999888766776643 23344443 6789999999876 345678999999
Q ss_pred EEECCChhhHHHHHHHHHHHH--cCCCCCCCcEEEEEeCCCCC----CCCCHHHHHHhhCCCccccCCCccccCCCCCcc
Q 029437 94 LVDAYDKERFAESKKELDALL--SDEALANVPFLVLGNKIDIP----YAASEEELRYHLGLSNFTTGKGKVNLADSNVRP 167 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~--~~~~~~~~pviiv~nK~D~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (193)
|+|+++++++..+..|+..+. .....+++|+++++||+|+. +....++..+... .. ..
T Consensus 79 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~-~~---------------~~ 142 (178)
T 2iwr_A 79 VFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXA-DM---------------KR 142 (178)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHH-HH---------------SS
T ss_pred EEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHH-hh---------------cC
Confidence 999999999999888654432 22333689999999999984 2334444332211 01 23
Q ss_pred eEEEEeeeecCCChhhHHHhhhhhc
Q 029437 168 LEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 168 ~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
.++++|||++|.|++++|++|.+.+
T Consensus 143 ~~~~~~Sa~~~~~i~~lf~~l~~~~ 167 (178)
T 2iwr_A 143 CSYYETXATYGLNVDRVFQEVAQKV 167 (178)
T ss_dssp EEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred CeEEEEeccccCCHHHHHHHHHHHH
Confidence 6789999999999999999998754
No 47
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.96 E-value=1.9e-29 Score=178.41 Aligned_cols=162 Identities=18% Similarity=0.223 Sum_probs=118.6
Q ss_pred hCCCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCccee-EEEeCC--EEEEEEEcCChhhhHhhHHhhcccCC
Q 029437 14 LGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTSE-ELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVD 89 (193)
Q Consensus 14 ~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~-~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d 89 (193)
+...+..++|+++|++|+|||||++++.+..+.. ..+|.+.... .+...+ ..+.+|||||++.+......+++.+|
T Consensus 17 ~~~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 96 (194)
T 3reg_A 17 IENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSD 96 (194)
T ss_dssp ----CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred ccccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCc
Confidence 3345678999999999999999999999988754 3455544332 233333 56799999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC----CCHHHHHHhhCCCccccCCCccccCCCCC
Q 029437 90 AVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA----ASEEELRYHLGLSNFTTGKGKVNLADSNV 165 (193)
Q Consensus 90 ~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (193)
++++|+|++++.++..+...|...+.. ...+.|+++|+||+|+... ...++....... .
T Consensus 97 ~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~--------------- 159 (194)
T 3reg_A 97 VVLLCFAVNNRTSFDNISTKWEPEIKH-YIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQK-L--------------- 159 (194)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHH-HCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHH-H---------------
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHH-hCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHh-c---------------
Confidence 999999999999998875444444332 2358999999999999732 333332221111 0
Q ss_pred cceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 166 RPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 166 ~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
....+++|||++|.|++++|++|.+.+
T Consensus 160 ~~~~~~~~Sa~~~~gi~~l~~~l~~~i 186 (194)
T 3reg_A 160 GCVAYIEASSVAKIGLNEVFEKSVDCI 186 (194)
T ss_dssp TCSCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CCCEEEEeecCCCCCHHHHHHHHHHHH
Confidence 111279999999999999999998764
No 48
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=6.6e-29 Score=176.81 Aligned_cols=158 Identities=20% Similarity=0.221 Sum_probs=123.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEE
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPT--SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~v 91 (193)
....++|+++|++|+|||||++++.+..+.. ..+|.+.. ...+.+++ ..+.+|||||++.+......+++.+|++
T Consensus 23 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 102 (201)
T 2ew1_A 23 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANAL 102 (201)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEE
Confidence 4567999999999999999999999888764 44555533 33445554 6899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceE
Q 029437 92 VYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLE 169 (193)
Q Consensus 92 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
++|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.. ....++...... . ..+.
T Consensus 103 i~v~D~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~--~---------------~~~~ 164 (201)
T 2ew1_A 103 ILTYDITCEESFRCLPEWLREIEQY-ASNKVITVLVGNKIDLAERREVSQQRAEEFSE--A---------------QDMY 164 (201)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCSSCHHHHHHHHH--H---------------HTCC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCccccccCHHHHHHHHH--H---------------cCCE
Confidence 9999999999998888888776442 235799999999999973 333333222111 0 1246
Q ss_pred EEEeeeecCCChhhHHHhhhhhc
Q 029437 170 VFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
+++|||++|.|++++|++|.+.+
T Consensus 165 ~~~~Sa~~g~gv~~l~~~l~~~i 187 (201)
T 2ew1_A 165 YLETSAKESDNVEKLFLDLACRL 187 (201)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998754
No 49
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.96 E-value=1e-28 Score=175.94 Aligned_cols=159 Identities=19% Similarity=0.291 Sum_probs=125.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCcc-eeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEEE
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQH-QPTQYPT-SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAVV 92 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~-~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~vl 92 (193)
.+..++|+|+|++|||||||++++.+..+... .+|.+.. ...+...+ ..+.+|||||+..+......++..+|+++
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 90 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 90 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEE
Confidence 45679999999999999999999998886543 3444432 23444444 58999999999999999899999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceEE
Q 029437 93 YLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEV 170 (193)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (193)
+|+|++++.++..+..|+..+.......+.|+++|+||+|+.. ....++....... ...++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~ 153 (206)
T 2bov_A 91 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQ-----------------WNVNY 153 (206)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------HTCEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHH-----------------hCCeE
Confidence 9999999999999988888887655556899999999999974 3333443332211 12468
Q ss_pred EEeeeecCCChhhHHHhhhhhc
Q 029437 171 FMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 171 ~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
+++||++|.|++++|++|.+.+
T Consensus 154 ~~~Sa~~g~gi~~l~~~l~~~i 175 (206)
T 2bov_A 154 VETSAKTRANVDKVFFDLMREI 175 (206)
T ss_dssp EEECTTTCTTHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998764
No 50
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.96 E-value=3.4e-29 Score=174.83 Aligned_cols=157 Identities=21% Similarity=0.323 Sum_probs=121.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCC--cceeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEE
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQY--PTSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~v 91 (193)
....++|+++|++|+|||||++++.+..+.. ..++.+ .....+...+ ..+.+|||||++.+......+++.+|++
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 85 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGV 85 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEE
Confidence 4567999999999999999999999888664 334444 3344555665 7899999999999988888899999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC--CCHHHHHHhhCCCccccCCCccccCCCCCcceE
Q 029437 92 VYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA--ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLE 169 (193)
Q Consensus 92 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
++|+|++++.++..+..|+..+... .++.|+++|+||+|+... ....+....... ..++
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~ 146 (181)
T 3tw8_B 86 IVVYDVTSAESFVNVKRWLHEINQN--CDDVCRILVGNKNDDPERKVVETEDAYKFAGQ-----------------MGIQ 146 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHH--CTTSEEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------HTCC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECCCCchhcccCHHHHHHHHHH-----------------cCCe
Confidence 9999999999999998888877543 358999999999998732 232322221110 1246
Q ss_pred EEEeeeecCCChhhHHHhhhhhc
Q 029437 170 VFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
++++||++|.|++++|++|.+.+
T Consensus 147 ~~~~Sa~~~~gi~~l~~~l~~~~ 169 (181)
T 3tw8_B 147 LFETSAKENVNVEEMFNCITELV 169 (181)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 79999999999999999998764
No 51
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.96 E-value=3e-29 Score=173.10 Aligned_cols=156 Identities=17% Similarity=0.299 Sum_probs=121.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEEE
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPT--SEELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAVV 92 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl 92 (193)
...++|+++|++|+|||||++++.+..+.. ..+|.+.. ...+... ...+.+|||||+..+......+++.+|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 457899999999999999999999887764 34555443 3344444 368999999999998888888899999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceEE
Q 029437 93 YLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEV 170 (193)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (193)
+|+|++++.+++.+..|+..+.... .+.|+++++||+|+.. ....++....... ..+++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~ 143 (168)
T 1z2a_A 83 LVFSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLAKR-----------------LKLRF 143 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHHHH-----------------HTCEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccCcccccCHHHHHHHHHH-----------------cCCeE
Confidence 9999999999988888887775432 5899999999999973 2333333222210 12478
Q ss_pred EEeeeecCCChhhHHHhhhhhc
Q 029437 171 FMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 171 ~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
+++||++|.|+++++++|.+.+
T Consensus 144 ~~~Sa~~~~~i~~l~~~l~~~~ 165 (168)
T 1z2a_A 144 YRTSVKEDLNVSEVFKYLAEKH 165 (168)
T ss_dssp EECBTTTTBSSHHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998764
No 52
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.96 E-value=4.1e-29 Score=172.82 Aligned_cols=158 Identities=20% Similarity=0.269 Sum_probs=115.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEE
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~v 91 (193)
....++|+++|++|+|||||++++.+..+.. ..++.+... ..+..+ ...+.+|||||++.+......+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA 82 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence 4567899999999999999999999887754 445655443 334433 36899999999999988888889999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceE
Q 029437 92 VYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLE 169 (193)
Q Consensus 92 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
++|+|++++.+++.+..|+..+... ...+.|+++++||+|+.. ....++....... ...+
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~ 144 (170)
T 1z08_A 83 ILVYDITDEDSFQKVKNWVKELRKM-LGNEICLCIVGNKIDLEKERHVSIQEAESYAES-----------------VGAK 144 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHH-HGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------TTCE
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECcccccccccCHHHHHHHHHH-----------------cCCe
Confidence 9999999999999888887776432 224799999999999974 3333333322111 1257
Q ss_pred EEEeeeecCCChhhHHHhhhhhc
Q 029437 170 VFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
++++||++|.|++++|++|.+.+
T Consensus 145 ~~~~Sa~~~~gi~~l~~~l~~~~ 167 (170)
T 1z08_A 145 HYHTSAKQNKGIEELFLDLCKRM 167 (170)
T ss_dssp EEEEBTTTTBSHHHHHHHHHHHH
T ss_pred EEEecCCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998764
No 53
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.96 E-value=1.1e-28 Score=174.85 Aligned_cols=159 Identities=19% Similarity=0.223 Sum_probs=117.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCC--CcceeEEEeCC--EEEEEEEcCChhhhHh-hHHhhcccCCE
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLV-QHQPTQ--YPTSEELSIGK--IKFKAFDLGGHQIARR-VWKDYYAKVDA 90 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~--~~~~~~~~~~~--~~~~~~D~~G~~~~~~-~~~~~~~~~d~ 90 (193)
....++|+++|++|||||||++++.+..+. ...++. ......+.+++ +.+.+|||+|+..+.. +...+++.+|+
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~ 99 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDA 99 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSE
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCE
Confidence 456799999999999999999999754332 222332 22334444444 6789999999987654 66778889999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC--CCHHHHHHhhCCCccccCCCccccCCCCCcce
Q 029437 91 VVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA--ASEEELRYHLGLSNFTTGKGKVNLADSNVRPL 168 (193)
Q Consensus 91 vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (193)
+++|+|++++.++..+..|+..+.......++|+++|+||+|+... ...++....... ..+
T Consensus 100 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~-----------------~~~ 162 (195)
T 3cbq_A 100 FLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGT-----------------LSC 162 (195)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHH-----------------TTC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHH-----------------hCC
Confidence 9999999999999999999888765433458999999999999742 333333221110 124
Q ss_pred EEEEeeeecCCChhhHHHhhhhhc
Q 029437 169 EVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 169 ~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
.+++|||++|.|++++|++|.+.+
T Consensus 163 ~~~e~Sa~~~~~v~~lf~~l~~~i 186 (195)
T 3cbq_A 163 KHIETSAALHHNTRELFEGAVRQI 186 (195)
T ss_dssp EEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHH
Confidence 789999999999999999998764
No 54
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.96 E-value=3.9e-29 Score=179.78 Aligned_cols=159 Identities=19% Similarity=0.270 Sum_probs=121.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEEeC------------CEEEEEEEcCChhhhHhhH
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPT--SEELSIG------------KIKFKAFDLGGHQIARRVW 81 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~------------~~~~~~~D~~G~~~~~~~~ 81 (193)
....++|+|+|++|+|||||++++.+..+.. ..+|.+.. ...+.+. ...+.+|||||++.+...+
T Consensus 22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~ 101 (217)
T 2f7s_A 22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLT 101 (217)
T ss_dssp CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHH
T ss_pred cceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHH
Confidence 4567999999999999999999999887653 23444322 2233332 5789999999999999999
Q ss_pred HhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccc
Q 029437 82 KDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVN 159 (193)
Q Consensus 82 ~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 159 (193)
..+++.+|++++|+|++++.++..+..|+..+.......+.|+++|+||+|+.. ....++..+....
T Consensus 102 ~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~----------- 170 (217)
T 2f7s_A 102 TAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADK----------- 170 (217)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHH-----------
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHH-----------
Confidence 999999999999999999999988888877765443336899999999999974 2333332222111
Q ss_pred cCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 160 LADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 160 ~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
..+.+++|||++|.|++++|++|.+.+
T Consensus 171 ------~~~~~~~~Sa~~g~gi~~l~~~l~~~i 197 (217)
T 2f7s_A 171 ------YGIPYFETSAATGQNVEKAVETLLDLI 197 (217)
T ss_dssp ------TTCCEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred ------CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 114689999999999999999998764
No 55
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.96 E-value=7.2e-29 Score=172.86 Aligned_cols=158 Identities=19% Similarity=0.254 Sum_probs=122.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCc--ceeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEE
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYP--TSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~v 91 (193)
.+..++|+++|++|+|||||++++.+..+.. ..++.+. ....+...+ ..+.+|||||++.+...+..++..+|++
T Consensus 11 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 90 (179)
T 2y8e_A 11 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVA 90 (179)
T ss_dssp -CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence 4567999999999999999999999887664 3445443 334444544 6899999999999998888889999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceE
Q 029437 92 VYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLE 169 (193)
Q Consensus 92 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
++|+|++++.++..+..|+..+... ...+.|+++|+||+|+.. ....++....... ..+.
T Consensus 91 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~ 152 (179)
T 2y8e_A 91 VVVYDITNTNSFHQTSKWIDDVRTE-RGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKE-----------------LNVM 152 (179)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHH-HTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------HTCE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECCcccccCcCCHHHHHHHHHH-----------------cCCe
Confidence 9999999999998888888777543 225899999999999973 2333332222110 1257
Q ss_pred EEEeeeecCCChhhHHHhhhhhc
Q 029437 170 VFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
++++||++|.|+++++++|.+.+
T Consensus 153 ~~~~Sa~~~~~i~~l~~~l~~~~ 175 (179)
T 2y8e_A 153 FIETSAKAGYNVKQLFRRVAAAL 175 (179)
T ss_dssp EEEEBTTTTBSHHHHHHHHHHTC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998875
No 56
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.96 E-value=5.4e-29 Score=177.08 Aligned_cols=158 Identities=20% Similarity=0.240 Sum_probs=117.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCc--ceeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEE
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYP--TSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~v 91 (193)
.+..++|+|+|++|||||||++++.+..+.. ..++.+. ....+..++ ..+.+|||||++.+...+..+++.+|++
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 101 (200)
T 2o52_A 22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA 101 (200)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEE
Confidence 4677999999999999999999999887754 3344443 334455555 7899999999999988888889999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceE
Q 029437 92 VYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLE 169 (193)
Q Consensus 92 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
++|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.. .....+....... ..+.
T Consensus 102 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~ 163 (200)
T 2o52_A 102 LLVYDITSRETYNSLAAWLTDARTLA-SPNIVVILCGNKKDLDPEREVTFLEASRFAQE-----------------NELM 163 (200)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHT-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------TTCE
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCcccccccCHHHHHHHHHH-----------------cCCE
Confidence 99999999999999888887775432 26899999999999963 2333333222111 1257
Q ss_pred EEEeeeecCCChhhHHHhhhhhc
Q 029437 170 VFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
+++|||++|.|++++|++|.+.+
T Consensus 164 ~~~~SA~~g~gi~~l~~~l~~~i 186 (200)
T 2o52_A 164 FLETSALTGENVEEAFLKCARTI 186 (200)
T ss_dssp EEEECTTTCTTHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998764
No 57
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.96 E-value=1.3e-28 Score=174.23 Aligned_cols=158 Identities=21% Similarity=0.275 Sum_probs=122.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCc--ceeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEE
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYP--TSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~v 91 (193)
....++|+++|++|+|||||++++.+..+.. ..++.+. ....+...+ ..+.+|||||++.+......+++.+|++
T Consensus 13 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 92 (196)
T 3tkl_A 13 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 92 (196)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEE
Confidence 3466899999999999999999999888664 3344443 344555555 6899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCC--CHHHHHHhhCCCccccCCCccccCCCCCcceE
Q 029437 92 VYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAA--SEEELRYHLGLSNFTTGKGKVNLADSNVRPLE 169 (193)
Q Consensus 92 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
++|+|++++.++..+..|+..+... ...+.|+++|+||+|+.... ...+....... ..++
T Consensus 93 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~ 154 (196)
T 3tkl_A 93 IVVYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTTKKVVDYTTAKEFADS-----------------LGIP 154 (196)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHH-----------------TTCC
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccccCHHHHHHHHHH-----------------cCCc
Confidence 9999999999999988887777543 33589999999999997432 22222111110 1146
Q ss_pred EEEeeeecCCChhhHHHhhhhhc
Q 029437 170 VFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
+++|||++|.|++++|++|.+.+
T Consensus 155 ~~~~Sa~~g~gv~~l~~~l~~~i 177 (196)
T 3tkl_A 155 FLETSAKNATNVEQSFMTMAAEI 177 (196)
T ss_dssp EEEECTTTCTTHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 79999999999999999998764
No 58
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=1.9e-29 Score=178.07 Aligned_cols=158 Identities=18% Similarity=0.283 Sum_probs=122.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEE--eCCEEEEEEEcCChhhhHhhHHhhcccCCEE
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS--EELS--IGKIKFKAFDLGGHQIARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~v 91 (193)
....+||+|+|++|+|||||++++.+..+.. ..++.+... ..+. .....+.+|||||++.+......+++.+|++
T Consensus 20 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 99 (191)
T 3dz8_A 20 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGF 99 (191)
T ss_dssp EEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEE
T ss_pred cCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEE
Confidence 4577999999999999999999999877654 234444332 2332 3568999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceE
Q 029437 92 VYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLE 169 (193)
Q Consensus 92 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
++|+|++++.+++.+..|+..+.. ....+.|+++|+||+|+.. ....++...... . ..+.
T Consensus 100 i~v~d~~~~~s~~~~~~~~~~i~~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-~----------------~~~~ 161 (191)
T 3dz8_A 100 ILMYDITNEESFNAVQDWATQIKT-YSWDNAQVILVGNKCDMEEERVVPTEKGQLLAE-Q----------------LGFD 161 (191)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHH-HSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHH-H----------------HTCE
T ss_pred EEEEECcCHHHHHHHHHHHHHHHH-hcCCCCCEEEEEECCCCccccccCHHHHHHHHH-H----------------cCCe
Confidence 999999999999988888777754 2346899999999999863 233332221111 0 1246
Q ss_pred EEEeeeecCCChhhHHHhhhhhc
Q 029437 170 VFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
+++|||++|.|++++|++|.+.+
T Consensus 162 ~~~~Sa~~~~gi~~l~~~l~~~i 184 (191)
T 3dz8_A 162 FFEASAKENISVRQAFERLVDAI 184 (191)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998764
No 59
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.96 E-value=2.3e-28 Score=173.75 Aligned_cols=155 Identities=18% Similarity=0.242 Sum_probs=121.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEeCC-------------------------------
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSIGK------------------------------- 63 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~------------------------------- 63 (193)
++.++|+|+|++|+|||||++++.+..+.. ..+|.+... ..+...+
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 467999999999999999999999988664 334554332 2233332
Q ss_pred --------EEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCC-
Q 029437 64 --------IKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIP- 134 (193)
Q Consensus 64 --------~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~- 134 (193)
..+.+|||||++.+......+++.+|++++|+|++++.++..+..|+..+... .+.|+++|+||+|..
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~---~~~piilv~NK~D~~~ 161 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKIS---SNYIIILVANKIDKNK 161 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH---SCCEEEEEEECTTCC-
T ss_pred cccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhh---CCCcEEEEEECCCccc
Confidence 78999999999999998899999999999999999999998888888877543 249999999999943
Q ss_pred CCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 135 YAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
.....++..+.... ..++++++||++|.|++++|++|.+.+
T Consensus 162 ~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 202 (208)
T 3clv_A 162 FQVDILEVQKYAQD-----------------NNLLFIQTSAKTGTNIKNIFYMLAEEI 202 (208)
T ss_dssp CCSCHHHHHHHHHH-----------------TTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHH-----------------cCCcEEEEecCCCCCHHHHHHHHHHHH
Confidence 23444444433321 124789999999999999999998764
No 60
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.96 E-value=9.8e-29 Score=172.17 Aligned_cols=158 Identities=20% Similarity=0.257 Sum_probs=123.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEE
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPT--SEELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~v 91 (193)
....++|+++|++|+|||||++++.+..+.. ..++.+.. ...+... ...+.+|||||++.+......+++.+|++
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 91 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA 91 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEE
Confidence 4567999999999999999999999888765 33454433 3334444 36899999999999999889999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceE
Q 029437 92 VYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLE 169 (193)
Q Consensus 92 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
++|+|++++.++..+..|+..+... ...+.|+++++||+|+.. ....++..+.... ..+.
T Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~ 153 (179)
T 1z0f_A 92 LMVYDITRRSTYNHLSSWLTDARNL-TNPNTVIILIGNKADLEAQRDVTYEEAKQFAEE-----------------NGLL 153 (179)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------TTCE
T ss_pred EEEEeCcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHHHH-----------------cCCE
Confidence 9999999999998888887776543 235899999999999963 3333333332211 1247
Q ss_pred EEEeeeecCCChhhHHHhhhhhc
Q 029437 170 VFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
++++||++|.|++++|++|.+.+
T Consensus 154 ~~~~Sa~~~~gi~~l~~~l~~~i 176 (179)
T 1z0f_A 154 FLEASAKTGENVEDAFLEAAKKI 176 (179)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998765
No 61
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.96 E-value=2.5e-28 Score=173.83 Aligned_cols=158 Identities=22% Similarity=0.293 Sum_probs=122.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEE
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~v 91 (193)
....++|+|+|++|+|||||++++.+..+.. ..++.+... ..+... ...+.+|||||++.+...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 84 (203)
T 1zbd_A 5 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGF 84 (203)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEE
Confidence 3456899999999999999999999988754 345555332 333333 46899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC--CCHHHHHHhhCCCccccCCCccccCCCCCcceE
Q 029437 92 VYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA--ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLE 169 (193)
Q Consensus 92 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
++|+|++++.++..+..|+..+... ...+.|+++|+||+|+... ...++...... . ..++
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-~----------------~~~~ 146 (203)
T 1zbd_A 85 ILMYDITNEESFNAVQDWSTQIKTY-SWDNAQVLLVGNKCDMEDERVVSSERGRQLAD-H----------------LGFE 146 (203)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHH-SCSSCEEEEEEECTTCTTSCCSCHHHHHHHHH-H----------------HTCE
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccCcccccCHHHHHHHHH-H----------------CCCe
Confidence 9999999999999888887776542 2358999999999999742 22332222111 0 1246
Q ss_pred EEEeeeecCCChhhHHHhhhhhc
Q 029437 170 VFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
+++|||++|.|++++|++|.+.+
T Consensus 147 ~~~~Sa~~~~gi~~l~~~l~~~i 169 (203)
T 1zbd_A 147 FFEASAKDNINVKQTFERLVDVI 169 (203)
T ss_dssp EEECBTTTTBSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998754
No 62
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.96 E-value=2e-29 Score=176.58 Aligned_cols=158 Identities=20% Similarity=0.272 Sum_probs=95.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCc--ceeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEE
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYP--TSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~v 91 (193)
.+..++|+++|++|+|||||++++.+..+.. ..+|.+. ....+.+++ ..+.+|||||++.+...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (183)
T 2fu5_C 5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 84 (183)
T ss_dssp CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEE
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEE
Confidence 4567999999999999999999999877653 3344443 334455555 7899999999999988888889999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC--CCHHHHHHhhCCCccccCCCccccCCCCCcceE
Q 029437 92 VYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA--ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLE 169 (193)
Q Consensus 92 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
++|+|++++.++..+..|+..+... ...+.|+++|+||+|+... ...++...... . ..++
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-~----------------~~~~ 146 (183)
T 2fu5_C 85 MLVYDITNEKSFDNIRNWIRNIEEH-ASADVEKMILGNKCDVNDKRQVSKERGEKLAL-D----------------YGIK 146 (183)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEEC--CCSCCCSCHHHHHHHHH-H----------------HTCE
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECccCCccCcCCHHHHHHHHH-H----------------cCCe
Confidence 9999999999999998888777543 2358999999999999742 33333322211 0 1247
Q ss_pred EEEeeeecCCChhhHHHhhhhhc
Q 029437 170 VFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
+++|||++|.|++++|++|.+.+
T Consensus 147 ~~~~Sa~~~~~i~~l~~~l~~~i 169 (183)
T 2fu5_C 147 FMETSAKANINVENAFFTLARDI 169 (183)
T ss_dssp EEECCC---CCHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998764
No 63
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.96 E-value=1.5e-28 Score=171.68 Aligned_cols=160 Identities=22% Similarity=0.343 Sum_probs=111.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCc--ceeEEEeC---CEEEEEEEcCChhhhHhhHHhhcccCCE
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYP--TSEELSIG---KIKFKAFDLGGHQIARRVWKDYYAKVDA 90 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~---~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 90 (193)
....++|+++|++|||||||++++.+..+.. ..++.+. ....+..+ ...+.+||+||++.+......+++.+|+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC 84 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence 4567999999999999999999999888654 3344443 33444443 4789999999999999988889999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHcCC---CCCCCcEEEEEeCCCCCCC---CCHHHHHHhhCCCccccCCCccccCCCC
Q 029437 91 VVYLVDAYDKERFAESKKELDALLSDE---ALANVPFLVLGNKIDIPYA---ASEEELRYHLGLSNFTTGKGKVNLADSN 164 (193)
Q Consensus 91 vl~v~d~~~~~~~~~~~~~~~~~~~~~---~~~~~pviiv~nK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (193)
+++|+|++++.++..+..|+..+.... ...+.|+++++||+|+... ...++...... ..
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~-~~-------------- 149 (182)
T 1ky3_A 85 CVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAK-SL-------------- 149 (182)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHH-HT--------------
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHH-hc--------------
Confidence 999999999999988888887765422 2368999999999999622 23333322221 01
Q ss_pred CcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 165 VRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 165 ~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
....+++|||++|.|++++|++|.+.+
T Consensus 150 -~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 176 (182)
T 1ky3_A 150 -GDIPLFLTSAKNAINVDTAFEEIARSA 176 (182)
T ss_dssp -TSCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred -CCCeEEEEecCCCCCHHHHHHHHHHHH
Confidence 235689999999999999999998754
No 64
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.96 E-value=1.9e-28 Score=173.13 Aligned_cols=158 Identities=20% Similarity=0.265 Sum_probs=123.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEe--CCEEEEEEEcCChhhhHhhHHhhcccCCEE
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSI--GKIKFKAFDLGGHQIARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~d~v 91 (193)
....++|+|+|++|+|||||++++.+..+.. ..++.+... ..+.. ....+.+|||||++.+...+..++..+|++
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v 101 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGA 101 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence 4567999999999999999999999988764 334544332 23333 347899999999999988889999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceE
Q 029437 92 VYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLE 169 (193)
Q Consensus 92 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
++|+|++++.++..+..|+..+... ...+.|+++|+||+|+.. ....++....... ..+.
T Consensus 102 i~v~D~~~~~s~~~~~~~l~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~ 163 (193)
T 2oil_A 102 LLVFDLTKHQTYAVVERWLKELYDH-AEATIVVMLVGNKSDLSQAREVPTEEARMFAEN-----------------NGLL 163 (193)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHTT-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------TTCE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECCCcccccccCHHHHHHHHHH-----------------cCCE
Confidence 9999999999998888888877543 346899999999999974 2333333222211 1257
Q ss_pred EEEeeeecCCChhhHHHhhhhhc
Q 029437 170 VFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
+++|||++|.|++++|++|.+.+
T Consensus 164 ~~~~Sa~~~~gi~~l~~~l~~~i 186 (193)
T 2oil_A 164 FLETSALDSTNVELAFETVLKEI 186 (193)
T ss_dssp EEEECTTTCTTHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998764
No 65
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.96 E-value=1.3e-28 Score=173.82 Aligned_cols=158 Identities=21% Similarity=0.258 Sum_probs=121.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCc--ceeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEE
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYP--TSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~v 91 (193)
....++|+|+|++|+|||||++++.+..+.. ..++.+. ....+..++ ..+.+|||||++.+......+++.+|++
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 97 (191)
T 2a5j_A 18 GSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGA 97 (191)
T ss_dssp TCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEE
Confidence 4577999999999999999999999888764 3344443 334455544 6899999999999988888889999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceE
Q 029437 92 VYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLE 169 (193)
Q Consensus 92 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
++|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.. ....++....... ..+.
T Consensus 98 i~v~d~~~~~s~~~~~~~l~~i~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~ 159 (191)
T 2a5j_A 98 LLVYDITRRETFNHLTSWLEDARQH-SSSNMVIMLIGNKSDLESRRDVKREEGEAFARE-----------------HGLI 159 (191)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------HTCE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccCCccccCHHHHHHHHHH-----------------cCCE
Confidence 9999999999999988888777543 235899999999999963 3333333222110 1247
Q ss_pred EEEeeeecCCChhhHHHhhhhhc
Q 029437 170 VFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
+++|||++|.|++++|++|.+.+
T Consensus 160 ~~~~Sa~~~~gi~~l~~~l~~~i 182 (191)
T 2a5j_A 160 FMETSAKTACNVEEAFINTAKEI 182 (191)
T ss_dssp EEEECTTTCTTHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998764
No 66
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.96 E-value=4.4e-29 Score=178.09 Aligned_cols=158 Identities=16% Similarity=0.229 Sum_probs=93.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC--Cccc-cCCCCC--cceeEEEeC----CEEEEEEEcCChhhhHhhHHhhcccC
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDE--RLVQ-HQPTQY--PTSEELSIG----KIKFKAFDLGGHQIARRVWKDYYAKV 88 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~--~~~~-~~~t~~--~~~~~~~~~----~~~~~~~D~~G~~~~~~~~~~~~~~~ 88 (193)
+..++|+|+|++|+|||||++++.+. .+.. ..+|.+ .....+.++ ...+.+|||||+..+...+..+++.+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 45689999999999999999999988 6553 445554 445556655 57899999999999999999999999
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHcCCC--CCCCcEEEEEeCCCCCC---CCCHHHHHHhhCCCccccCCCccccCCC
Q 029437 89 DAVVYLVDAYDKERFAESKKELDALLSDEA--LANVPFLVLGNKIDIPY---AASEEELRYHLGLSNFTTGKGKVNLADS 163 (193)
Q Consensus 89 d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~pviiv~nK~D~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (193)
|++++|+|++++.++..+..|+..+..... ..+.|+++|+||+|+.. ....++..+....
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~--------------- 162 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATT--------------- 162 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHH---------------
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHH---------------
Confidence 999999999999999999988888765433 25899999999999975 2333333222211
Q ss_pred CCcceEEEEeeeec-CCChhhHHHhhhhhc
Q 029437 164 NVRPLEVFMCSIVR-KMGYGDGFKWLSQYI 192 (193)
Q Consensus 164 ~~~~~~~~~~Sa~~-g~gv~el~~~i~~~~ 192 (193)
..+.+++|||++ |.|++++|++|.+.+
T Consensus 163 --~~~~~~~~Sa~~~~~gi~~l~~~i~~~~ 190 (208)
T 2yc2_C 163 --NTLDFFDVSANPPGKDADAPFLSIATTF 190 (208)
T ss_dssp --TTCEEEECCC-------CHHHHHHHHHH
T ss_pred --cCCEEEEeccCCCCcCHHHHHHHHHHHH
Confidence 125789999999 999999999998754
No 67
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.96 E-value=9.6e-29 Score=174.66 Aligned_cols=159 Identities=17% Similarity=0.265 Sum_probs=118.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCc--ceeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEE
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYP--TSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~v 91 (193)
....++|+++|++|+|||||++++.+..+.. ..++.+. ....+.+++ ..+.+|||||++.+...+..+++.+|++
T Consensus 23 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~i 102 (192)
T 2il1_A 23 ADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGI 102 (192)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEE
T ss_pred cCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence 4567899999999999999999999888754 3445543 334455544 6899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceE
Q 029437 92 VYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLE 169 (193)
Q Consensus 92 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
++|+|++++.+++.+..|+..+.. ....+.|+++|+||+|+.. ....++...... .. ....
T Consensus 103 ilV~D~~~~~s~~~~~~~~~~i~~-~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~-~~---------------~~~~ 165 (192)
T 2il1_A 103 ILVYDITKKETFDDLPKWMKMIDK-YASEDAELLLVGNKLDCETDREITRQQGEKFAQ-QI---------------TGMR 165 (192)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHH-HSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH-TS---------------TTCE
T ss_pred EEEEECcCHHHHHHHHHHHHHHHH-hcCCCCcEEEEEECcccccccccCHHHHHHHHH-hc---------------CCCe
Confidence 999999999999888777666533 2335899999999999973 233333322211 11 2357
Q ss_pred EEEeeeecCCChhhHHHhhhhhc
Q 029437 170 VFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
+++|||++|.|++++|++|.+.+
T Consensus 166 ~~~~SA~~g~gi~~l~~~l~~~i 188 (192)
T 2il1_A 166 FCEASAKDNFNVDEIFLKLVDDI 188 (192)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998764
No 68
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.96 E-value=1.4e-28 Score=169.13 Aligned_cols=157 Identities=18% Similarity=0.275 Sum_probs=119.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCcc-eeEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEEEEE
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQH-QPTQYPT-SEELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYL 94 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~-~~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v 94 (193)
+.++|+++|++|+|||||++++.+..+... .++.... ...+... ...+.+||+||+..+......++..+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 468999999999999999999998876543 3344332 2333343 35689999999998888888889999999999
Q ss_pred EECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC-CCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEe
Q 029437 95 VDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA-ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMC 173 (193)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
+|++++.++..+..|+..+.......+.|+++++||+|+... ...++..+... . ..++++++
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~-~----------------~~~~~~~~ 144 (166)
T 2ce2_X 82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLAR-S----------------YGIPYIET 144 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHH-H----------------HTCCEEEE
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHH-H----------------cCCeEEEe
Confidence 999999999888888877755444458999999999999752 23332222111 1 11358999
Q ss_pred eeecCCChhhHHHhhhhhc
Q 029437 174 SIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 174 Sa~~g~gv~el~~~i~~~~ 192 (193)
||++|.|+++++++|.+.+
T Consensus 145 Sa~~~~gi~~l~~~l~~~~ 163 (166)
T 2ce2_X 145 SAKTRQGVEDAFYTLVREI 163 (166)
T ss_dssp CTTTCTTHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHH
Confidence 9999999999999998765
No 69
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=1.3e-28 Score=174.52 Aligned_cols=158 Identities=20% Similarity=0.220 Sum_probs=120.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEEE
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAVV 92 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl 92 (193)
.+..++|+++|++|+|||||++++.+..+.. ..+|.+... ..+... ...+.+|||||+.. ......++..+|+++
T Consensus 25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ii 103 (196)
T 2atv_A 25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFV 103 (196)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEE
Confidence 4567999999999999999999999988764 334554333 223344 36799999999987 667778889999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceEE
Q 029437 93 YLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEV 170 (193)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (193)
+|+|++++++++.+..|+..+.......+.|+++|+||+|+.. ....++....... ..+.+
T Consensus 104 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~~ 166 (196)
T 2atv_A 104 LVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATE-----------------LACAF 166 (196)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------HTSEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHH-----------------hCCeE
Confidence 9999999999999888888776544446899999999999974 2333332221110 12478
Q ss_pred EEeeeecCC-ChhhHHHhhhhhc
Q 029437 171 FMCSIVRKM-GYGDGFKWLSQYI 192 (193)
Q Consensus 171 ~~~Sa~~g~-gv~el~~~i~~~~ 192 (193)
++|||++|. |++++|++|.+.+
T Consensus 167 ~~~Sa~~g~~gi~~l~~~l~~~i 189 (196)
T 2atv_A 167 YECSACTGEGNITEIFYELCREV 189 (196)
T ss_dssp EECCTTTCTTCHHHHHHHHHHHH
T ss_pred EEECCCcCCcCHHHHHHHHHHHH
Confidence 999999999 9999999998764
No 70
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.96 E-value=5.3e-29 Score=178.94 Aligned_cols=157 Identities=20% Similarity=0.178 Sum_probs=118.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCccee---EEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEE
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQH-QPTQYPTSE---ELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVV 92 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~~~---~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl 92 (193)
.+..+||+++|++|||||||++++.+..+... .+|.+.... .+....+.+.+|||+|++.+..++..++..+|+++
T Consensus 24 ~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 103 (214)
T 3q3j_B 24 VVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL 103 (214)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred ccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEE
Confidence 45789999999999999999999999887653 456554432 22334578999999999999999999999999999
Q ss_pred EEEECCChhhHHH-HHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC--------------CCHHHHHHhhCCCccccCCCc
Q 029437 93 YLVDAYDKERFAE-SKKELDALLSDEALANVPFLVLGNKIDIPYA--------------ASEEELRYHLGLSNFTTGKGK 157 (193)
Q Consensus 93 ~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~--------------~~~~~~~~~~~~~~~~~~~~~ 157 (193)
+|+|+++++++.. +..|+..+... .++.|+++|+||+|+... ...++...... .
T Consensus 104 ~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~-------- 172 (214)
T 3q3j_B 104 LCFDISRPETVDSALKKWRTEILDY--CPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAK-Q-------- 172 (214)
T ss_dssp EEEETTCTHHHHHHHTHHHHHHHHH--CTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHH-H--------
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHH-H--------
Confidence 9999999999988 46666666432 258999999999999642 22222111110 0
Q ss_pred cccCCCCCcce-EEEEeeeecCCC-hhhHHHhhhhhc
Q 029437 158 VNLADSNVRPL-EVFMCSIVRKMG-YGDGFKWLSQYI 192 (193)
Q Consensus 158 ~~~~~~~~~~~-~~~~~Sa~~g~g-v~el~~~i~~~~ 192 (193)
..+ .+++|||++|.| ++++|++|.+.+
T Consensus 173 --------~~~~~~~e~SA~~g~g~v~~lf~~l~~~~ 201 (214)
T 3q3j_B 173 --------LGAEIYLEGSAFTSEKSIHSIFRTASMLC 201 (214)
T ss_dssp --------HTCSEEEECCTTTCHHHHHHHHHHHHHHH
T ss_pred --------cCCCEEEEeccCCCcccHHHHHHHHHHHH
Confidence 123 789999999998 999999998754
No 71
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.96 E-value=1e-28 Score=177.70 Aligned_cols=162 Identities=21% Similarity=0.261 Sum_probs=120.4
Q ss_pred hhCCCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcceeEEEe--C-C--EEEEEEEcCChhhhHhhHHhhcc
Q 029437 13 SLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTSEELSI--G-K--IKFKAFDLGGHQIARRVWKDYYA 86 (193)
Q Consensus 13 ~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~--~-~--~~~~~~D~~G~~~~~~~~~~~~~ 86 (193)
++......++|+|+|++|||||||++++.+..+.. ..++.+........ . + ..+.+|||||+..+......++.
T Consensus 4 ~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 83 (218)
T 4djt_A 4 SMERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYI 83 (218)
T ss_dssp ------CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHT
T ss_pred CcccccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhh
Confidence 34456678999999999999999999999877654 34555544433332 1 1 78999999999998888888899
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC--CCHHHHHHhhCCCccccCCCccccCCCC
Q 029437 87 KVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA--ASEEELRYHLGLSNFTTGKGKVNLADSN 164 (193)
Q Consensus 87 ~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (193)
.+|++++|+|++++.+++.+..|+..+... ...+.|+++|+||+|+... ...++.......
T Consensus 84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~---------------- 146 (218)
T 4djt_A 84 GASGAILFFDVTSRITCQNLARWVKEFQAV-VGNEAPIVVCANKIDIKNRQKISKKLVMEVLKG---------------- 146 (218)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHH-HCSSSCEEEEEECTTCC----CCHHHHHHHTTT----------------
T ss_pred cCCEEEEEEeCCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCccccccCHHHHHHHHHH----------------
Confidence 999999999999999998888877776433 2246899999999999743 233333222221
Q ss_pred CcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 165 VRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 165 ~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
....+++|||++|.|++++|++|.+.+
T Consensus 147 -~~~~~~~~Sa~~g~gv~~l~~~l~~~~ 173 (218)
T 4djt_A 147 -KNYEYFEISAKTAHNFGLPFLHLARIF 173 (218)
T ss_dssp -CCCEEEEEBTTTTBTTTHHHHHHHHHH
T ss_pred -cCCcEEEEecCCCCCHHHHHHHHHHHH
Confidence 235799999999999999999998764
No 72
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=1.7e-28 Score=173.89 Aligned_cols=162 Identities=14% Similarity=0.146 Sum_probs=120.3
Q ss_pred hCCCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCccee-EEEeC--CEEEEEEEcCChhhhHhhHHhhcccCC
Q 029437 14 LGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTSE-ELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVD 89 (193)
Q Consensus 14 ~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~-~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d 89 (193)
|......++|+++|++|||||||++++.+..+.. ..++.+.... .+... ...+.+|||||+..+..+...++..+|
T Consensus 2 m~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 81 (199)
T 2gf0_A 2 MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGH 81 (199)
T ss_dssp ---CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCS
T ss_pred CccCCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCC
Confidence 3344567999999999999999999999887654 3345443322 22233 368999999999999988888999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHcCC-CCCCCcEEEEEeCCCCCCC-CCHHHHHHhhCCCccccCCCccccCCCCCcc
Q 029437 90 AVVYLVDAYDKERFAESKKELDALLSDE-ALANVPFLVLGNKIDIPYA-ASEEELRYHLGLSNFTTGKGKVNLADSNVRP 167 (193)
Q Consensus 90 ~vl~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~pviiv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (193)
++++|+|++++.+++.+..++..+.... ...+.|+++|+||+|+... ...++...... . ..
T Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-~----------------~~ 144 (199)
T 2gf0_A 82 AFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQ-E----------------WK 144 (199)
T ss_dssp EEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHH-H----------------HT
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHH-H----------------hC
Confidence 9999999999999988887776654321 1357899999999999743 23322222111 0 12
Q ss_pred eEEEEeeeecCCChhhHHHhhhhhc
Q 029437 168 LEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 168 ~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
+.++++||++|.|++++|++|.+.+
T Consensus 145 ~~~~~~Sa~~~~gi~~l~~~l~~~~ 169 (199)
T 2gf0_A 145 CAFMETSAKMNYNVKELFQELLTLE 169 (199)
T ss_dssp CEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred CeEEEEecCCCCCHHHHHHHHHHHH
Confidence 4789999999999999999998765
No 73
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.96 E-value=1.8e-28 Score=172.68 Aligned_cols=158 Identities=21% Similarity=0.280 Sum_probs=121.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEE
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~v 91 (193)
.+..++|+|+|++|+|||||++++.+..+.. ..++.+... ..+... ...+.+|||||++.+......++..+|++
T Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 98 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGF 98 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEE
T ss_pred cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEE
Confidence 3457899999999999999999999988754 345555433 333333 46899999999999888888899999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC--CCHHHHHHhhCCCccccCCCccccCCCCCcceE
Q 029437 92 VYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA--ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLE 169 (193)
Q Consensus 92 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
++|+|++++.++..+..|+..+... ...+.|+++|+||+|+... ...++..+... . ..+.
T Consensus 99 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-~----------------~~~~ 160 (189)
T 2gf9_A 99 LLMYDIANQESFAAVQDWATQIKTY-SWDNAQVILVGNKCDLEDERVVPAEDGRRLAD-D----------------LGFE 160 (189)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHH-H----------------HTCE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccCCCHHHHHHHHH-H----------------cCCe
Confidence 9999999999998888887776542 2458999999999999732 22222222111 0 1247
Q ss_pred EEEeeeecCCChhhHHHhhhhhc
Q 029437 170 VFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
++++||++|.|++++|++|.+.+
T Consensus 161 ~~~~Sa~~g~gi~~l~~~l~~~i 183 (189)
T 2gf9_A 161 FFEASAKENINVKQVFERLVDVI 183 (189)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998764
No 74
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.96 E-value=9.2e-29 Score=170.93 Aligned_cols=156 Identities=20% Similarity=0.273 Sum_probs=117.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEEEE
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPT--SEELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~ 93 (193)
..++|+++|++|+|||||++++.+..+.. ..++.+.. ...+..+ ...+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 45899999999999999999999888754 34454433 3344444 3689999999999998888888999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC-CCHHHHHHhhCCCccccCCCccccCCCCCcceEEEE
Q 029437 94 LVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA-ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFM 172 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (193)
|+|++++.++..+..|+..+... ...+.|+++++||+|+... ...++...... . ..+++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-~----------------~~~~~~~ 143 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEH-ANDEAQLLLVGNKSDMETRVVTADQGEALAK-E----------------LGIPFIE 143 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCTTCCSCHHHHHHHHH-H----------------HTCCEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECccCCcCccCHHHHHHHHH-H----------------cCCeEEE
Confidence 99999999998888888777543 2358999999999999532 23332222111 0 1135799
Q ss_pred eeeecCCChhhHHHhhhhhc
Q 029437 173 CSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 173 ~Sa~~g~gv~el~~~i~~~~ 192 (193)
+||++|.|++++|++|.+.+
T Consensus 144 ~Sa~~~~gv~~l~~~l~~~~ 163 (170)
T 1g16_A 144 SSAKNDDNVNEIFFTLAKLI 163 (170)
T ss_dssp CBTTTTBSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 99999999999999998764
No 75
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=8e-29 Score=171.48 Aligned_cols=158 Identities=15% Similarity=0.160 Sum_probs=118.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCccee-EEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEEEEE
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTSE-ELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYL 94 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~-~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v 94 (193)
..++|+++|++|+|||||++++.+..+.. ..++.+.... ..... ...+.+|||||+..+......++..+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 81 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence 35899999999999999999999887653 3445443332 22233 36799999999999998888889999999999
Q ss_pred EECCChhhHHHHHHHHHHHHcCC-CCCCCcEEEEEeCCCCCCC--CCHHHHHHhhCCCccccCCCccccCCCCCcceEEE
Q 029437 95 VDAYDKERFAESKKELDALLSDE-ALANVPFLVLGNKIDIPYA--ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVF 171 (193)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~-~~~~~pviiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (193)
+|++++.+++....++..+.... ..++.|+++++||+|+... ....+...... . ..++++
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~-~----------------~~~~~~ 144 (172)
T 2erx_A 82 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALAR-T----------------WKCAFM 144 (172)
T ss_dssp EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHH-H----------------HTCEEE
T ss_pred EECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHH-H----------------hCCeEE
Confidence 99999999888888877664321 2358999999999998632 22222211110 0 124789
Q ss_pred EeeeecCCChhhHHHhhhhhcC
Q 029437 172 MCSIVRKMGYGDGFKWLSQYIK 193 (193)
Q Consensus 172 ~~Sa~~g~gv~el~~~i~~~~~ 193 (193)
++||++|.|+++++++|.+.++
T Consensus 145 ~~Sa~~~~gi~~l~~~l~~~~~ 166 (172)
T 2erx_A 145 ETSAKLNHNVKELFQELLNLEK 166 (172)
T ss_dssp ECBTTTTBSHHHHHHHHHHTCC
T ss_pred EecCCCCcCHHHHHHHHHHHHh
Confidence 9999999999999999988653
No 76
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.96 E-value=8.3e-29 Score=176.65 Aligned_cols=160 Identities=19% Similarity=0.305 Sum_probs=121.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEE
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPT--SEELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~v 91 (193)
....++|+|+|++|+|||||++++.+..+.. ..++.+.. ...+... ...+.+|||||+..+......+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC 84 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence 4567999999999999999999999888664 34454433 2333333 37899999999999888888889999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHcCC---CCCCCcEEEEEeCCCCCC-CCCHHHHHHhhCCCccccCCCccccCCCCCcc
Q 029437 92 VYLVDAYDKERFAESKKELDALLSDE---ALANVPFLVLGNKIDIPY-AASEEELRYHLGLSNFTTGKGKVNLADSNVRP 167 (193)
Q Consensus 92 l~v~d~~~~~~~~~~~~~~~~~~~~~---~~~~~pviiv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (193)
++|+|++++.++..+..|+..+.... ...+.|+++|+||+|+.. ....++....... . ..
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-~---------------~~ 148 (207)
T 1vg8_A 85 VLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYS-K---------------NN 148 (207)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHH-T---------------TS
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHh-c---------------CC
Confidence 99999999999988888877765432 225789999999999973 2333333322210 1 23
Q ss_pred eEEEEeeeecCCChhhHHHhhhhhc
Q 029437 168 LEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 168 ~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
..++++||++|.|++++|++|.+.+
T Consensus 149 ~~~~~~Sa~~g~gi~~l~~~l~~~~ 173 (207)
T 1vg8_A 149 IPYFETSAKEAINVEQAFQTIARNA 173 (207)
T ss_dssp CCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ceEEEEeCCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999998764
No 77
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.96 E-value=3.3e-28 Score=173.63 Aligned_cols=158 Identities=20% Similarity=0.285 Sum_probs=123.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEE
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPT--SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~v 91 (193)
....++|+|+|++|+|||||++++.+..+.. ..++.+.. ...+.+++ ..+.+|||||++.+...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~v 84 (206)
T 2bcg_Y 5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGI 84 (206)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEE
Confidence 4567899999999999999999999988764 34555443 33455544 5899999999999988888899999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC--CCHHHHHHhhCCCccccCCCccccCCCCCcceE
Q 029437 92 VYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA--ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLE 169 (193)
Q Consensus 92 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
++|+|++++.++..+..|+..+... ...+.|+++|+||+|+... ...++....... ..++
T Consensus 85 ilv~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~ 146 (206)
T 2bcg_Y 85 IIVYDVTDQESFNGVKMWLQEIDRY-ATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADA-----------------NKMP 146 (206)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHH-----------------TTCC
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCccccccCHHHHHHHHHH-----------------cCCe
Confidence 9999999999999988888777543 2358999999999999742 233332222110 1246
Q ss_pred EEEeeeecCCChhhHHHhhhhhc
Q 029437 170 VFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
++++||++|.|++++|++|.+.+
T Consensus 147 ~~~~Sa~~g~gi~~l~~~l~~~i 169 (206)
T 2bcg_Y 147 FLETSALDSTNVEDAFLTMARQI 169 (206)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998764
No 78
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.96 E-value=5.4e-29 Score=175.28 Aligned_cols=159 Identities=19% Similarity=0.225 Sum_probs=116.2
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEE
Q 029437 16 LWQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAV 91 (193)
Q Consensus 16 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~v 91 (193)
..+..++|+++|++|||||||++++.+..+.. ..+|.+... ...... .+.+.+|||+|++.+..+ ..++..+|++
T Consensus 17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ 95 (187)
T 3c5c_A 17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAF 95 (187)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEE
T ss_pred CCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEE
Confidence 34677999999999999999999999888664 345555432 223333 468899999999888765 5688999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHcCCC--CCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcc
Q 029437 92 VYLVDAYDKERFAESKKELDALLSDEA--LANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRP 167 (193)
Q Consensus 92 l~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (193)
++|+|++++++++.+..|+..+..... ..+.|+++++||+|+.. ....++..+.... ..
T Consensus 96 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-----------------~~ 158 (187)
T 3c5c_A 96 LVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGR-----------------FG 158 (187)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHH-----------------HT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHH-----------------cC
Confidence 999999999999999888887754311 25899999999999963 2333332221110 12
Q ss_pred eEEEEeee-ecCCChhhHHHhhhhhc
Q 029437 168 LEVFMCSI-VRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 168 ~~~~~~Sa-~~g~gv~el~~~i~~~~ 192 (193)
+.+++||| ++|.|++++|++|.+.+
T Consensus 159 ~~~~e~Sa~~~g~gv~~lf~~l~~~i 184 (187)
T 3c5c_A 159 CLFFEVSACLDFEHVQHVFHEAVREA 184 (187)
T ss_dssp CEEEECCSSSCSHHHHHHHHHHHHHH
T ss_pred CcEEEEeecCccccHHHHHHHHHHHH
Confidence 47899999 89999999999998765
No 79
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.96 E-value=2.3e-28 Score=173.63 Aligned_cols=158 Identities=21% Similarity=0.222 Sum_probs=113.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCc--ceeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEE
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYP--TSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~v 91 (193)
.+..++|+++|++|+|||||++++.+..+.. ..++.+. ....+..++ ..+.+|||||++.+......+++.+|++
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 104 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGV 104 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEE
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEE
Confidence 4567999999999999999999999888654 3445443 233444444 6799999999999999989999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--------CCCHHHHHHhhCCCccccCCCccccCCC
Q 029437 92 VYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--------AASEEELRYHLGLSNFTTGKGKVNLADS 163 (193)
Q Consensus 92 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (193)
++|+|++++.++..+..|+..+... ...+.|+++|+||+|+.. ....++...... .
T Consensus 105 ilv~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~-~-------------- 168 (199)
T 2p5s_A 105 LLLYDVTCEKSFLNIREWVDMIEDA-AHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAM-T-------------- 168 (199)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHH-C---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHH-H--------------
T ss_pred EEEEECCChHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccccccccccCHHHHHHHHH-H--------------
Confidence 9999999999998888877766432 235899999999999851 112221111100 0
Q ss_pred CCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 164 NVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 164 ~~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
..+.+++|||++|.|++++|++|.+.+
T Consensus 169 --~~~~~~~~SA~~g~gv~el~~~l~~~i 195 (199)
T 2p5s_A 169 --YGALFCETSAKDGSNIVEAVLHLAREV 195 (199)
T ss_dssp --HTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred --cCCeEEEeeCCCCCCHHHHHHHHHHHH
Confidence 125789999999999999999998865
No 80
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=5.3e-28 Score=173.11 Aligned_cols=158 Identities=14% Similarity=0.165 Sum_probs=115.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCC--ccccCCCCCcc--eeEEEeCC--EEEEEEEcCChhh-hHhhHHhhcccCCE
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDER--LVQHQPTQYPT--SEELSIGK--IKFKAFDLGGHQI-ARRVWKDYYAKVDA 90 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~~--~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~G~~~-~~~~~~~~~~~~d~ 90 (193)
...+||+++|++|+|||||++++.+.. +....++.+.. ...+..++ +.+.+|||+|... +..+...+++.+|+
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~ 114 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 114 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCE
Confidence 456899999999999999999998644 33333444333 33444544 5678999999876 45566667788999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcce
Q 029437 91 VVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPL 168 (193)
Q Consensus 91 vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (193)
+++|+|++++++|+.+..|+..+.......++|+++|+||+|+.. ....++... +... ..+
T Consensus 115 ~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~-~a~~----------------~~~ 177 (211)
T 2g3y_A 115 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRA-CAVV----------------FDC 177 (211)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHH-HHHH----------------HTC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHH-HHHH----------------cCC
Confidence 999999999999999988887775433345899999999999963 233332111 1000 124
Q ss_pred EEEEeeeecCCChhhHHHhhhhhc
Q 029437 169 EVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 169 ~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
.+++|||++|.|++++|++|.+.+
T Consensus 178 ~~~e~SAk~g~~v~elf~~l~~~i 201 (211)
T 2g3y_A 178 KFIETSAAVQHNVKELFEGIVRQV 201 (211)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHH
Confidence 789999999999999999998764
No 81
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.9e-28 Score=176.08 Aligned_cols=158 Identities=22% Similarity=0.260 Sum_probs=118.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCc--ceeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEE
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYP--TSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~v 91 (193)
....++|+|+|++|+|||||++++.+..+.. ..++.+. ....+...+ ..+.+|||||++.+..++..+++.+|++
T Consensus 10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v 89 (223)
T 3cpj_B 10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGA 89 (223)
T ss_dssp CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEE
T ss_pred CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEE
Confidence 3567899999999999999999999988764 3455443 344455555 6899999999999988888899999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceE
Q 029437 92 VYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLE 169 (193)
Q Consensus 92 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.. ....++....... ..+.
T Consensus 90 ilV~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~ 151 (223)
T 3cpj_B 90 LIVYDISKSSSYENCNHWLSELRENA-DDNVAVGLIGNKSDLAHLRAVPTEESKTFAQE-----------------NQLL 151 (223)
T ss_dssp EEEEC-CCHHHHHHHHHHHHHHHHHC-C--CEEEEEECCGGGGGGCCSCHHHHHHHHHH-----------------TTCE
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccccCHHHHHHHHHH-----------------cCCE
Confidence 99999999999999888887775432 35899999999999973 3333333222110 1257
Q ss_pred EEEeeeecCCChhhHHHhhhhhc
Q 029437 170 VFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
++++||++|.|++++|++|.+.+
T Consensus 152 ~~~~Sa~~~~gi~~l~~~l~~~i 174 (223)
T 3cpj_B 152 FTETSALNSENVDKAFEELINTI 174 (223)
T ss_dssp EEECCCC-CCCHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998764
No 82
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.96 E-value=5.1e-28 Score=170.42 Aligned_cols=159 Identities=18% Similarity=0.270 Sum_probs=111.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCcc-eeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEEE
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQH-QPTQYPT-SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAVV 92 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~-~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~vl 92 (193)
.+..++|+++|++|||||||++++.+..+... .++.... ...+...+ ..+.+||+||+..+......++..+|+++
T Consensus 18 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 97 (190)
T 3con_A 18 GMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 97 (190)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEEE
T ss_pred ccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEE
Confidence 45779999999999999999999998876543 2333322 23344443 56999999999999888889999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC-CCCHHHHHHhhCCCccccCCCccccCCCCCcceEEE
Q 029437 93 YLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY-AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVF 171 (193)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (193)
+|+|++++.++..+..|+..+.......+.|+++|+||+|+.. ....++..+.... ..++++
T Consensus 98 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-----------------~~~~~~ 160 (190)
T 3con_A 98 CVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKS-----------------YGIPFI 160 (190)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHH-----------------HTCCEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHH-----------------cCCeEE
Confidence 9999999999988888877765433335899999999999974 2333333222110 113589
Q ss_pred EeeeecCCChhhHHHhhhhhc
Q 029437 172 MCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 172 ~~Sa~~g~gv~el~~~i~~~~ 192 (193)
+|||++|.|+++++++|.+.+
T Consensus 161 ~~Sa~~~~gi~~l~~~l~~~~ 181 (190)
T 3con_A 161 ETSAKTRQGVEDAFYTLVREI 181 (190)
T ss_dssp ECCTTTCTTHHHHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHHHHH
Confidence 999999999999999998764
No 83
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.96 E-value=6.4e-28 Score=171.60 Aligned_cols=172 Identities=16% Similarity=0.282 Sum_probs=119.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEEEE
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~ 93 (193)
...++|+++|++|+|||||++++.+..+.. ..+|..... ..+..++ ..+.+|||||++.+......++..+|++++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 102 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 102 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEE
Confidence 467899999999999999999999888764 334544332 3344444 689999999999998888889999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEe
Q 029437 94 LVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMC 173 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
|+|++++++++.+...|...+.. ..++.|+++|+||+|+.......+.............. ...+.+. .....+++|
T Consensus 103 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~-~~~~~~~~~ 179 (201)
T 2gco_A 103 CFSIDSPDSLENIPEKWTPEVKH-FCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEE-GRDMANR-ISAFGYLEC 179 (201)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHH-HSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHH-HHHHHHH-TTCSEEEEC
T ss_pred EEECCCHHHHHHHHHHHHHHHHH-hCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHH-HHHHHHh-CCCcEEEEe
Confidence 99999999998885444444332 22589999999999997542222211111111100000 0000000 012378999
Q ss_pred eeecCCChhhHHHhhhhhc
Q 029437 174 SIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 174 Sa~~g~gv~el~~~i~~~~ 192 (193)
||++|.|++++|++|.+.+
T Consensus 180 SA~~g~gi~~l~~~i~~~~ 198 (201)
T 2gco_A 180 SAKTKEGVREVFEMATRAG 198 (201)
T ss_dssp CTTTCTTHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHH
Confidence 9999999999999998753
No 84
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.96 E-value=6.7e-29 Score=177.13 Aligned_cols=173 Identities=18% Similarity=0.269 Sum_probs=118.5
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc-eeEEEe--CCEEEEEEEcCChhhhHhhHHhhcccCCEE
Q 029437 16 LWQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPT-SEELSI--GKIKFKAFDLGGHQIARRVWKDYYAKVDAV 91 (193)
Q Consensus 16 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~d~v 91 (193)
..++.++|+++|++|||||||++++.+..+.. ..++.... ...+.. ..+.+.+|||||++.+......++..+|++
T Consensus 26 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 105 (204)
T 4gzl_A 26 FQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF 105 (204)
T ss_dssp ----CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred hcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence 35678999999999999999999999887764 33444322 222333 346677999999999999888899999999
Q ss_pred EEEEECCChhhHHHHH-HHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEE
Q 029437 92 VYLVDAYDKERFAESK-KELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEV 170 (193)
Q Consensus 92 l~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (193)
++|+|++++.++.... .|+..+... . .+.|+++|+||+|+.......+............... ..+.+ .....++
T Consensus 106 i~v~d~~~~~s~~~~~~~~~~~~~~~-~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~-~~~~~-~~~~~~~ 181 (204)
T 4gzl_A 106 LICFSLVSPASFENVRAKWYPEVRHH-C-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQG-LAMAK-EIGAVKY 181 (204)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHH-C-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHH-HHHHH-HTTCSEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHh-C-CCCCEEEEEechhhccchhhhhhhhccccccccHHHH-HHHHH-hcCCcEE
Confidence 9999999999998887 444444332 2 6899999999999975433222222221111100000 00000 0022469
Q ss_pred EEeeeecCCChhhHHHhhhhhc
Q 029437 171 FMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 171 ~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
++|||++|.|++++|++|.+.+
T Consensus 182 ~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 182 LECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp EECCTTTCTTHHHHHHHHHHTT
T ss_pred EEeeCCCCCCHHHHHHHHHHHh
Confidence 9999999999999999998764
No 85
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.96 E-value=5.3e-29 Score=179.62 Aligned_cols=158 Identities=20% Similarity=0.301 Sum_probs=121.5
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcceeEEE--e--CCEEEEEEEcCChhhhHhhHHhhcccCCE
Q 029437 16 LWQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTSEELS--I--GKIKFKAFDLGGHQIARRVWKDYYAKVDA 90 (193)
Q Consensus 16 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~--~--~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 90 (193)
.....+||+++|++|||||||++++....+.. ..++.+....... . ....+.+|||||++.+..+...+++.+|+
T Consensus 11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 90 (221)
T 3gj0_A 11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQC 90 (221)
T ss_dssp CCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCE
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCE
Confidence 35678999999999999999999977666543 3456654443332 2 34789999999999998888889999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEE
Q 029437 91 VVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEV 170 (193)
Q Consensus 91 vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (193)
+++|+|++++.++..+..|+..+... ..++|+++|+||+|+.......+.. ... ....+.+
T Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~-----~~~------------~~~~~~~ 151 (221)
T 3gj0_A 91 AIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVKAKSI-----VFH------------RKKNLQY 151 (221)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHH--STTCCEEEEEECTTSSSCSSCGGGC-----CHH------------HHHTCEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECCccccccccHHHH-----HHH------------HHcCCEE
Confidence 99999999999999998888887653 2489999999999997432211100 000 0023578
Q ss_pred EEeeeecCCChhhHHHhhhhhc
Q 029437 171 FMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 171 ~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
++|||++|.|++++|++|.+.+
T Consensus 152 ~~~Sa~~~~gi~~l~~~l~~~l 173 (221)
T 3gj0_A 152 YDISAKSNYNFEKPFLWLARKL 173 (221)
T ss_dssp EECBGGGTBTTTHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998764
No 86
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.96 E-value=6e-28 Score=172.90 Aligned_cols=158 Identities=18% Similarity=0.268 Sum_probs=120.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCc--ceeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEE
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYP--TSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~v 91 (193)
....++|+|+|++|+|||||++++.+..+.. ..++.+. ....+.+.+ ..+.+|||||++.+...+..++..+|++
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 96 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGI 96 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence 3567999999999999999999999888653 4455543 344555655 7899999999999988888889999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC-CCHHHHHHhhCCCccccCCCccccCCCCCcceEE
Q 029437 92 VYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA-ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEV 170 (193)
Q Consensus 92 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (193)
++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+... ...++...... . ..+++
T Consensus 97 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-~----------------~~~~~ 158 (213)
T 3cph_A 97 ILVYDVTDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEALAK-E----------------LGIPF 158 (213)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHT-TTCSEEEEEEECTTCSSCCSCHHHHHHHHH-H----------------HTCCE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCcccccCHHHHHHHHH-H----------------cCCEE
Confidence 99999999999988888887775432 247999999999999532 23232221111 0 11357
Q ss_pred EEeeeecCCChhhHHHhhhhhc
Q 029437 171 FMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 171 ~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
+++||++|.|++++|++|.+.+
T Consensus 159 ~~~Sa~~~~gi~~l~~~l~~~~ 180 (213)
T 3cph_A 159 IESSAKNDDNVNEIFFTLAKLI 180 (213)
T ss_dssp EECBTTTTBSSHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998764
No 87
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=6.1e-28 Score=170.62 Aligned_cols=171 Identities=19% Similarity=0.243 Sum_probs=119.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEEEE
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~ 93 (193)
...++|+++|++|+|||||++++.+..+.. ..+|.+... ..+...+ ..+.+|||||++.+......+++.+|++++
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 95 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLI 95 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEE
Confidence 366899999999999999999999888764 345554433 3344444 789999999999998888889999999999
Q ss_pred EEECCChhhHHHHH-HHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEE
Q 029437 94 LVDAYDKERFAESK-KELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFM 172 (193)
Q Consensus 94 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (193)
|+|+++++++..+. .|+..+... .++.|+++|+||+|+.......+.............. ...+.+. .....+++
T Consensus 96 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~-~~~~~~~~ 171 (194)
T 2atx_A 96 CFSVVNPASFQNVKEEWVPELKEY--APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQ-GQKLAKE-IGACCYVE 171 (194)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHH-HHHHHHH-HTCSCEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhcccccchhhcccccCcccCHHH-HHHHHHH-cCCcEEEE
Confidence 99999999998887 565555432 2489999999999997532111110000000000000 0000000 01136899
Q ss_pred eeeecCCChhhHHHhhhhhc
Q 029437 173 CSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 173 ~Sa~~g~gv~el~~~i~~~~ 192 (193)
|||++|.|++++|++|.+.+
T Consensus 172 ~Sa~~g~gi~~l~~~l~~~i 191 (194)
T 2atx_A 172 CSALTQKGLKTVFDEAIIAI 191 (194)
T ss_dssp CCTTTCTTHHHHHHHHHHHH
T ss_pred eeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999998764
No 88
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.95 E-value=2.4e-28 Score=171.32 Aligned_cols=171 Identities=17% Similarity=0.253 Sum_probs=118.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEEEE
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~ 93 (193)
+..++|+++|++|+|||||++++.+..+.. ..+|..... ..+... ...+.+|||||++.+......++..+|++++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 82 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence 567899999999999999999999887754 334544332 233333 3677899999999998888888999999999
Q ss_pred EEECCChhhHHHHH-HHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEE
Q 029437 94 LVDAYDKERFAESK-KELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFM 172 (193)
Q Consensus 94 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (193)
|+|++++.++.... .|+..+... .++.|+++++||+|+.......+.............. ...+.+. ....++++
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~-~~~~~~~~ 158 (186)
T 1mh1_A 83 CFSLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQ-GLAMAKE-IGAVKYLE 158 (186)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH--STTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHH-HHHHHHH-TTCSEEEE
T ss_pred EEECCChhhHHHHHHHHHHHHHHh--CCCCCEEEEeEcccccccchhhhhhcccccccCCHHH-HHHHHHh-cCCcEEEE
Confidence 99999999998887 455555332 2489999999999997432222211111111100000 0000000 01237999
Q ss_pred eeeecCCChhhHHHhhhhhc
Q 029437 173 CSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 173 ~Sa~~g~gv~el~~~i~~~~ 192 (193)
|||++|.|++++|++|.+.+
T Consensus 159 ~Sa~~g~gi~~l~~~l~~~~ 178 (186)
T 1mh1_A 159 CSALTQRGLKTVFDEAIRAV 178 (186)
T ss_dssp CCTTTCTTHHHHHHHHHHHH
T ss_pred ecCCCccCHHHHHHHHHHHH
Confidence 99999999999999998765
No 89
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=9.6e-28 Score=171.44 Aligned_cols=171 Identities=16% Similarity=0.256 Sum_probs=116.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCcce-eEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEEEE
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQH-QPTQYPTS-EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~~-~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~ 93 (193)
+..++|+++|++|||||||++++.+..+... .+|.+... ..+...+ ..+.+|||||++.+......++..+|++++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 102 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 102 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEE
Confidence 5678999999999999999999999887643 34444332 3344444 689999999999998888889999999999
Q ss_pred EEECCChhhHHHHH-HHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEE
Q 029437 94 LVDAYDKERFAESK-KELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFM 172 (193)
Q Consensus 94 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (193)
|+|++++.++..+. .|+..+.. ..++.|+++|+||+|+.......+....+......... ...+++. .....+++
T Consensus 103 v~d~~~~~s~~~~~~~~~~~~~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~-~~~~~~~~ 178 (207)
T 2fv8_A 103 CFSVDSPDSLENIPEKWVPEVKH--FCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDD-GRAMAVR-IQAYDYLE 178 (207)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHH--HSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHH-HHHHHHH-TTCSEEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHH--hCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHH-HHHHHHh-cCCCEEEE
Confidence 99999999998884 44444432 22589999999999997432222222222111100000 0000000 01237899
Q ss_pred eeeecCCChhhHHHhhhhhc
Q 029437 173 CSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 173 ~Sa~~g~gv~el~~~i~~~~ 192 (193)
|||++|.|++++|++|.+.+
T Consensus 179 ~SA~~g~gi~el~~~l~~~i 198 (207)
T 2fv8_A 179 CSAKTKEGVREVFETATRAA 198 (207)
T ss_dssp CCTTTCTTHHHHHHHHHHHH
T ss_pred eeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999998753
No 90
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.95 E-value=4.9e-29 Score=174.31 Aligned_cols=157 Identities=17% Similarity=0.179 Sum_probs=107.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce---eEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEE
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS---EELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~---~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~ 93 (193)
++.++|+++|++|+|||||++++.+..+.. ..+|.+... ..+......+.+|||||++.+...+..+++.+|++++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 85 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 85 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEE
Confidence 457899999999999999999999887654 334443221 1122334677899999999999888889999999999
Q ss_pred EEECCChhhHHHHHH-HHHHHHcCCCCCCCcEEEEEeCCCCCCCCC------------HHHHHHhhCCCccccCCCcccc
Q 029437 94 LVDAYDKERFAESKK-ELDALLSDEALANVPFLVLGNKIDIPYAAS------------EEELRYHLGLSNFTTGKGKVNL 160 (193)
Q Consensus 94 v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~pviiv~nK~D~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~ 160 (193)
|+|++++.+++.+.. |+..+... .++.|+++++||+|+..... .++... +....
T Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~-~~~~~---------- 152 (182)
T 3bwd_D 86 AFSLISKASYENVSKKWIPELKHY--APGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEE-LKKLI---------- 152 (182)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH--CTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHH-HHHHH----------
T ss_pred EEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHH-HHHHc----------
Confidence 999999999988874 55554332 24899999999999864321 111110 00000
Q ss_pred CCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 161 ADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 161 ~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
....+++|||++|.|++++|++|.+.+
T Consensus 153 -----~~~~~~~~Sa~~~~gi~~l~~~l~~~i 179 (182)
T 3bwd_D 153 -----GAPAYIECSSKSQENVKGVFDAAIRVV 179 (182)
T ss_dssp -----TCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -----CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 113789999999999999999998764
No 91
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.95 E-value=5.6e-28 Score=171.71 Aligned_cols=172 Identities=13% Similarity=0.165 Sum_probs=112.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEEE
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAVV 92 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~vl 92 (193)
....++|+++|++|+|||||++++.+..+.. ..+|.+... ..+..++ +.+.+|||||++.+..++..++..+|+++
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 96 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFL 96 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEE
Confidence 4678999999999999999999999888664 345554332 2344444 57889999999999888888899999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEE
Q 029437 93 YLVDAYDKERFAESK-KELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVF 171 (193)
Q Consensus 93 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (193)
+|+|++++.++..+. .|+..+... .++.|+++|+||+|+.......+.............. ...+.+ ......++
T Consensus 97 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~-~~~~~~-~~~~~~~~ 172 (201)
T 2q3h_A 97 LCFSVVSPSSFQNVSEKWVPEIRCH--CPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEA-AKLLAE-EIKAASYI 172 (201)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH--CSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHH-HHHHHH-HHTCSEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHH-HHHHHH-hcCCcEEE
Confidence 999999999998887 565555432 2489999999999996421100000000000000000 000000 00123789
Q ss_pred EeeeecCCChhhHHHhhhhhc
Q 029437 172 MCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 172 ~~Sa~~g~gv~el~~~i~~~~ 192 (193)
+|||++|.|++++|++|.+.+
T Consensus 173 ~~Sa~~g~gi~~l~~~l~~~~ 193 (201)
T 2q3h_A 173 ECSALTQKNLKEVFDAAIVAG 193 (201)
T ss_dssp ECCTTTCTTHHHHHHHHHHHH
T ss_pred EEecCCCCCHHHHHHHHHHHH
Confidence 999999999999999998754
No 92
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.95 E-value=8.8e-28 Score=172.53 Aligned_cols=171 Identities=20% Similarity=0.280 Sum_probs=102.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc-eeEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEEEE
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPT-SEELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~ 93 (193)
...++|+++|++|+|||||++++.+..+.. ..+|.... ...+... ...+.+|||||++.+...+..++..+|++++
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 111 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLL 111 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEE
Confidence 467999999999999999999999887654 33444332 2233443 3589999999999999988889999999999
Q ss_pred EEECCChhhHHHHH-HHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEE
Q 029437 94 LVDAYDKERFAESK-KELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFM 172 (193)
Q Consensus 94 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (193)
|+|++++.++..+. .|+..+... .+++|+++|+||+|+.......+............... ..+.+. .....+++
T Consensus 112 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~-~~~~~~~~ 187 (214)
T 2j1l_A 112 CFDVTSPNSFDNIFNRWYPEVNHF--CKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRG-QEMARS-VGAVAYLE 187 (214)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH--CSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHH-HHHHHH-TTCSEEEE
T ss_pred EEECcCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHH-HHHHHh-cCCCEEEE
Confidence 99999999998887 455555332 25899999999999975432222222211111100000 000000 01237899
Q ss_pred eeeecCCChhhHHHhhhhhc
Q 029437 173 CSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 173 ~Sa~~g~gv~el~~~i~~~~ 192 (193)
|||++|.|++++|++|.+.+
T Consensus 188 ~SA~~g~gi~el~~~l~~~~ 207 (214)
T 2j1l_A 188 CSARLHDNVHAVFQEAAEVA 207 (214)
T ss_dssp CBTTTTBSHHHHHHHHHHHH
T ss_pred ecCCCCCCHHHHHHHHHHHH
Confidence 99999999999999998754
No 93
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.95 E-value=1.3e-27 Score=166.56 Aligned_cols=163 Identities=20% Similarity=0.215 Sum_probs=118.7
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhcCCcccc-CC--CCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEE
Q 029437 16 LWQKEAKILFLGLDNAGKTTLLHMLKDERLVQH-QP--TQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVV 92 (193)
Q Consensus 16 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~--t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl 92 (193)
...+.++|+++|++|||||||++++.+..+... .+ +.......+..++..+.+|||||++.+...+...+..+|+++
T Consensus 4 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 83 (178)
T 2lkc_A 4 MVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVI 83 (178)
T ss_dssp TCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence 345778999999999999999999998887642 22 344555667788889999999999998888778889999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEE
Q 029437 93 YLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFM 172 (193)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (193)
+|+|++++... ...+.+.... ..+.|+++|+||+|+... ..+++...+..... +.......+.+++
T Consensus 84 ~v~d~~~~~~~-~~~~~l~~~~----~~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~--------~~~~~~~~~~~~~ 149 (178)
T 2lkc_A 84 LVVAADDGVMP-QTVEAINHAK----AANVPIIVAINKMDKPEA-NPDRVMQELMEYNL--------VPEEWGGDTIFCK 149 (178)
T ss_dssp EEEETTCCCCH-HHHHHHHHHG----GGSCCEEEEEETTTSSCS-CHHHHHHHHTTTTC--------CBTTTTSSEEEEE
T ss_pred EEEECCCCCcH-HHHHHHHHHH----hCCCCEEEEEECccCCcC-CHHHHHHHHHhcCc--------ChhHcCCcccEEE
Confidence 99999884221 1222233332 247899999999999753 34444444332110 1111112378999
Q ss_pred eeeecCCChhhHHHhhhhhc
Q 029437 173 CSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 173 ~Sa~~g~gv~el~~~i~~~~ 192 (193)
|||++|.|++++|++|.+.+
T Consensus 150 ~Sa~~~~gv~~l~~~l~~~~ 169 (178)
T 2lkc_A 150 LSAKTKEGLDHLLEMILLVS 169 (178)
T ss_dssp CCSSSSHHHHHHHHHHHHHH
T ss_pred EecCCCCCHHHHHHHHHHhh
Confidence 99999999999999998764
No 94
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.95 E-value=2.3e-28 Score=171.49 Aligned_cols=171 Identities=23% Similarity=0.277 Sum_probs=116.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEe--CCEEEEEEEcCChhhhHhhHHhhcccCCEEE
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSI--GKIKFKAFDLGGHQIARRVWKDYYAKVDAVV 92 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl 92 (193)
....++|+++|++|+|||||++++.+..+.. ..||.+... ..+.. ....+.+|||||++.+......+++.+|+++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 83 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 83 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEE
Confidence 3567899999999999999999999988754 345554332 22333 3478999999999999888888999999999
Q ss_pred EEEECCChhhHHHH-HHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC-HHHHHHhhCCCccccCCCccccCCCCCcceEE
Q 029437 93 YLVDAYDKERFAES-KKELDALLSDEALANVPFLVLGNKIDIPYAAS-EEELRYHLGLSNFTTGKGKVNLADSNVRPLEV 170 (193)
Q Consensus 93 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (193)
+|+|++++.++..+ ..|+..+... .++.|+++++||+|+..... ..++.+...... .... ...+.+. .....+
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v-~~~~-~~~~~~~-~~~~~~ 158 (184)
T 1m7b_A 84 ICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPV-SYDQ-GANMAKQ-IGAATY 158 (184)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCC-CHHH-HHHHHHH-HTCSEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEEcchhhcchhhHhhhhhcccCCC-CHHH-HHHHHHH-cCCcEE
Confidence 99999999999888 4555544322 25899999999999963210 001100000000 0000 0000000 012578
Q ss_pred EEeeee-cCCChhhHHHhhhhhc
Q 029437 171 FMCSIV-RKMGYGDGFKWLSQYI 192 (193)
Q Consensus 171 ~~~Sa~-~g~gv~el~~~i~~~~ 192 (193)
++|||+ +|.|++++|++|.+.+
T Consensus 159 ~e~Sa~~~~~gi~~l~~~i~~~~ 181 (184)
T 1m7b_A 159 IECSALQSENSVRDIFHVATLAC 181 (184)
T ss_dssp EECBTTTBHHHHHHHHHHHHHHH
T ss_pred EEeeecCCCcCHHHHHHHHHHHH
Confidence 999998 6999999999998754
No 95
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.95 E-value=1.1e-28 Score=176.89 Aligned_cols=157 Identities=17% Similarity=0.204 Sum_probs=116.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEEEE
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~ 93 (193)
...++|+++|++|+|||||++++.+..+.. ..+|.+... ..+..+ ...+.+|||||++.+..++..+++.+|++++
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~il 86 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL 86 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEE
Confidence 467999999999999999999999888764 345555433 233333 3789999999999999888889999999999
Q ss_pred EEECCChhhHHHHH-HHHHHHHcCCCCCCCcEEEEEeCCCCCCCC----------CHHHHHHhhCCCccccCCCccccCC
Q 029437 94 LVDAYDKERFAESK-KELDALLSDEALANVPFLVLGNKIDIPYAA----------SEEELRYHLGLSNFTTGKGKVNLAD 162 (193)
Q Consensus 94 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~pviiv~nK~D~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (193)
|+|+++++++..+. .|+..+... .++.|+++|+||+|+.... ..++..+... ..
T Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~-~~------------ 151 (212)
T 2j0v_A 87 AFSLISKASYENVLKKWMPELRRF--APNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRK-QI------------ 151 (212)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH--CTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHH-HH------------
T ss_pred EEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHH-Hc------------
Confidence 99999999998887 555555332 2489999999999986431 1111111100 00
Q ss_pred CCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 163 SNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 163 ~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
....+++|||++|.|++++|++|.+.+
T Consensus 152 ---~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 178 (212)
T 2j0v_A 152 ---GAAAYIECSSKTQQNVKAVFDTAIKVV 178 (212)
T ss_dssp ---TCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ---CCceEEEccCCCCCCHHHHHHHHHHHH
Confidence 113789999999999999999998754
No 96
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.95 E-value=6.9e-27 Score=165.19 Aligned_cols=158 Identities=14% Similarity=0.172 Sum_probs=110.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCC--ccccCCCCCcc--eeEEEeCC--EEEEEEEcCChhh-hHhhHHhhcccCCE
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDER--LVQHQPTQYPT--SEELSIGK--IKFKAFDLGGHQI-ARRVWKDYYAKVDA 90 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~~--~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~G~~~-~~~~~~~~~~~~d~ 90 (193)
+..++|+++|++|||||||++++.+.. +....++.+.. ...+..++ ..+.+|||+|... .+.+...+++.+|+
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~ 83 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 83 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence 456899999999999999999998633 33333333322 33445544 4678999999765 34455566788999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcce
Q 029437 91 VVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPL 168 (193)
Q Consensus 91 vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (193)
+++|+|+++++++.....|+..+.......+.|+++++||+|+.. ....++... +... ..+
T Consensus 84 ~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~-~a~~----------------~~~ 146 (192)
T 2cjw_A 84 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRA-XAVV----------------FDX 146 (192)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHH-HHHH----------------TTC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHH-HHHH----------------hCC
Confidence 999999999999999988887765433345899999999999863 222222111 1000 124
Q ss_pred EEEEeeeecCCChhhHHHhhhhhc
Q 029437 169 EVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 169 ~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
.+++|||++|.|++++|++|.+.+
T Consensus 147 ~~~e~SA~~g~~v~~lf~~l~~~~ 170 (192)
T 2cjw_A 147 KFIETSAAVQHNVKELFEGIVRQV 170 (192)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ceEEeccccCCCHHHHHHHHHHHH
Confidence 689999999999999999998754
No 97
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.95 E-value=7.2e-28 Score=171.94 Aligned_cols=171 Identities=23% Similarity=0.283 Sum_probs=116.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCcce-eEEEe--CCEEEEEEEcCChhhhHhhHHhhcccCCEEE
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQH-QPTQYPTS-EELSI--GKIKFKAFDLGGHQIARRVWKDYYAKVDAVV 92 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~~-~~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl 92 (193)
....++|+++|++|+|||||++++.+..+... .+|.+... ..+.. ....+.+|||||++.+..+...++..+|+++
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 104 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 104 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEE
Confidence 35679999999999999999999999887643 45554332 22332 3478999999999999888888999999999
Q ss_pred EEEECCChhhHHHH-HHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC-HHHHHHhhCCCccccCCCccccCCCCCcceEE
Q 029437 93 YLVDAYDKERFAES-KKELDALLSDEALANVPFLVLGNKIDIPYAAS-EEELRYHLGLSNFTTGKGKVNLADSNVRPLEV 170 (193)
Q Consensus 93 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (193)
+|+|++++.++..+ ..|+..+... .++.|+++|+||+|+..... ..++.+...... .... ...+++. .....+
T Consensus 105 lv~D~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v-~~~~-~~~~~~~-~~~~~~ 179 (205)
T 1gwn_A 105 ICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPV-SYDQ-GANMAKQ-IGAATY 179 (205)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCC-CHHH-HHHHHHH-HTCSEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEechhhccchhhhhhhcccccCCC-CHHH-HHHHHHH-cCCCEE
Confidence 99999999999888 4555555332 25899999999999963210 000100000000 0000 0000000 012578
Q ss_pred EEeeee-cCCChhhHHHhhhhhc
Q 029437 171 FMCSIV-RKMGYGDGFKWLSQYI 192 (193)
Q Consensus 171 ~~~Sa~-~g~gv~el~~~i~~~~ 192 (193)
++|||+ +|.|++++|++|.+.+
T Consensus 180 ~e~SAk~~~~gv~~lf~~l~~~~ 202 (205)
T 1gwn_A 180 IECSALQSENSVRDIFHVATLAC 202 (205)
T ss_dssp EECCTTTCHHHHHHHHHHHHHHH
T ss_pred EEeeeccCCcCHHHHHHHHHHHH
Confidence 999999 6899999999998753
No 98
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.95 E-value=1.3e-28 Score=174.82 Aligned_cols=155 Identities=23% Similarity=0.330 Sum_probs=113.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcccc-CC--CCCcceeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEEE
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQH-QP--TQYPTSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAVV 92 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~--t~~~~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~vl 92 (193)
...++|+|+|++|||||||++++.+..+... .+ +.......+...+ ..+.+|||||++.+......+++.+|+++
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 110 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 110 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence 4569999999999999999999998876542 23 3334455556655 68999999999999888888899999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCC-----CHHHHHHhhCCCccccCCCccccCCCCCcc
Q 029437 93 YLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAA-----SEEELRYHLGLSNFTTGKGKVNLADSNVRP 167 (193)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (193)
+|+|++++.++..+..|+..+.. ....+.|+++|+||+|+.... ...++...++
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~i~~-~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~-------------------- 169 (199)
T 3l0i_B 111 VVYDVTDQESFNNVKQWLQEIDR-YASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLG-------------------- 169 (199)
T ss_dssp ECC-CCCSHHHHHHHHHHHHHHS-CC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTT--------------------
T ss_pred EEEECCCHHHHHHHHHHHHHHHH-hccCCCCEEEEEECccCCccccCCHHHHHHHHHHcC--------------------
Confidence 99999999999999888877754 334589999999999997321 1112222222
Q ss_pred eEEEEeeeecCCChhhHHHhhhhhcC
Q 029437 168 LEVFMCSIVRKMGYGDGFKWLSQYIK 193 (193)
Q Consensus 168 ~~~~~~Sa~~g~gv~el~~~i~~~~~ 193 (193)
++++++||++|.|++++|++|.+.+.
T Consensus 170 ~~~~~vSA~~g~gv~~l~~~l~~~l~ 195 (199)
T 3l0i_B 170 IPFLETSAKNATNVEQSFMTMAAEIK 195 (199)
T ss_dssp CCBCCCCC---HHHHHHHHHHTTTTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35689999999999999999988763
No 99
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.95 E-value=2.1e-26 Score=158.92 Aligned_cols=148 Identities=30% Similarity=0.338 Sum_probs=107.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCC--CCCcceeEEEeCCEEEEEEEcCChhhhH------hhHHhhcc--c
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDERLV-QHQP--TQYPTSEELSIGKIKFKAFDLGGHQIAR------RVWKDYYA--K 87 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~D~~G~~~~~------~~~~~~~~--~ 87 (193)
..++|+++|++|||||||++++.+..+. ...| |.......+.+.+..+.+|||||+..+. .+...++. .
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEK 81 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHC
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCC
Confidence 4579999999999999999999987643 2223 3445566677778999999999987653 33344544 7
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CC--CHHHHHHhhCCCccccCCCccccCCC
Q 029437 88 VDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AA--SEEELRYHLGLSNFTTGKGKVNLADS 163 (193)
Q Consensus 88 ~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (193)
+|++++|+|+++.++. ..|+..+.. .+.|+++++||+|+.. .. ...++.+.++
T Consensus 82 ~~~~i~v~D~~~~~~~---~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~---------------- 138 (165)
T 2wji_A 82 PDLVVNIVDATALERN---LYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKILG---------------- 138 (165)
T ss_dssp CSEEEEEEETTCHHHH---HHHHHHHHH----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHT----------------
T ss_pred CCEEEEEecCCchhHh---HHHHHHHHh----cCCCEEEEEEchHhccccChhhHHHHHHHHhC----------------
Confidence 9999999999886543 345555433 3789999999999852 11 2233333332
Q ss_pred CCcceEEEEeeeecCCChhhHHHhhhhhcC
Q 029437 164 NVRPLEVFMCSIVRKMGYGDGFKWLSQYIK 193 (193)
Q Consensus 164 ~~~~~~~~~~Sa~~g~gv~el~~~i~~~~~ 193 (193)
.++++|||++|.|++++|++|.+.++
T Consensus 139 ----~~~~~~SA~~~~~v~~l~~~l~~~~~ 164 (165)
T 2wji_A 139 ----VKVVPLSAAKKMGIEELKKAISIAVK 164 (165)
T ss_dssp ----SCEEECBGGGTBSHHHHHHHHHHHTT
T ss_pred ----CCEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 35789999999999999999988764
No 100
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.95 E-value=3.2e-27 Score=167.37 Aligned_cols=166 Identities=16% Similarity=0.215 Sum_probs=112.5
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcce--eE--EE-eCCEEEEEEEcCChhhhHhhH---Hhhccc
Q 029437 16 LWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTS--EE--LS-IGKIKFKAFDLGGHQIARRVW---KDYYAK 87 (193)
Q Consensus 16 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~--~~-~~~~~~~~~D~~G~~~~~~~~---~~~~~~ 87 (193)
..++.+||+++|++|||||||++++.+........+..... .. +. .....+.+|||+|++.+.... ..+++.
T Consensus 16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 95 (196)
T 3llu_A 16 FQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRG 95 (196)
T ss_dssp ----CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHT
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccccccc
Confidence 35678999999999999999999888754333222222222 22 22 345899999999999887776 788899
Q ss_pred CCEEEEEEECCCh--hhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCH----HHHHHhhCCCccccCCCccccC
Q 029437 88 VDAVVYLVDAYDK--ERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASE----EELRYHLGLSNFTTGKGKVNLA 161 (193)
Q Consensus 88 ~d~vl~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 161 (193)
+|++++|+|++++ +++..+..|+..... ..++.|+++|+||+|+...... .++............
T Consensus 96 ~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~------- 166 (196)
T 3llu_A 96 TGALIYVIDAQDDYMEALTRLHITVSKAYK--VNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAG------- 166 (196)
T ss_dssp CSEEEEEEETTSCCHHHHHHHHHHHHHHHH--HCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTT-------
T ss_pred CCEEEEEEECCCchHHHHHHHHHHHHHHHh--cCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhh-------
Confidence 9999999999997 667777777776532 2358999999999998642111 111111111110000
Q ss_pred CCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 162 DSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 162 ~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
.....+.+++|||++ .|++++|+.|.+.+
T Consensus 167 -~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 167 -LEKLHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp -CTTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred -hhcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence 001347899999999 99999999998764
No 101
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.94 E-value=8.5e-27 Score=163.60 Aligned_cols=159 Identities=13% Similarity=0.155 Sum_probs=110.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC--Cccc-cCCCCCcceeEEEe-------CCEEEEEEEcCChhhhHhhHHhhcccCC
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKDE--RLVQ-HQPTQYPTSEELSI-------GKIKFKAFDLGGHQIARRVWKDYYAKVD 89 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~~--~~~~-~~~t~~~~~~~~~~-------~~~~~~~~D~~G~~~~~~~~~~~~~~~d 89 (193)
+++|+++|++|||||||++++.+. .+.. ..+|.+........ ....+.+|||+|++.+..+...++..++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 479999999999999999999985 3433 45566654433321 3568999999999999888888889999
Q ss_pred EEEEEEECCCh-hhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHH----HHHHhhCCCccccCCCccccCCCC
Q 029437 90 AVVYLVDAYDK-ERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEE----ELRYHLGLSNFTTGKGKVNLADSN 164 (193)
Q Consensus 90 ~vl~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 164 (193)
++++|+|++++ .++..+..|+..+... .++.|+++|+||+|+....... +..+.+.... ..
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~------------~~ 147 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKAR--ASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKR------------GF 147 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHH--CTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCT------------TS
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhh--CCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhc------------CC
Confidence 99999999987 5788888888777543 2478999999999996432111 1112221111 00
Q ss_pred CcceEEEEeeeecCC-ChhhHHHhhhhhc
Q 029437 165 VRPLEVFMCSIVRKM-GYGDGFKWLSQYI 192 (193)
Q Consensus 165 ~~~~~~~~~Sa~~g~-gv~el~~~i~~~~ 192 (193)
.....++++||++|. |++++++.|.+.+
T Consensus 148 ~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~ 176 (184)
T 2zej_A 148 PAIRDYHFVNATEESDALAKLRKTIINES 176 (184)
T ss_dssp CEEEEEEECCTTSCCHHHHHHHHHHHHHH
T ss_pred cchhheEEEecccCchhHHHHHHHHHHHH
Confidence 012358999999997 9999999987654
No 102
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.94 E-value=1.3e-26 Score=158.83 Aligned_cols=149 Identities=18% Similarity=0.200 Sum_probs=105.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc--cCC--CCCcceeEEEeCCEEEEEEEcCChhh-------hHhhHHhhcccCC
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDERLVQ--HQP--TQYPTSEELSIGKIKFKAFDLGGHQI-------ARRVWKDYYAKVD 89 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~~~~--~~~--t~~~~~~~~~~~~~~~~~~D~~G~~~-------~~~~~~~~~~~~d 89 (193)
.+|+++|++|+|||||++++.+..+.. ..+ +.......+...+..+.+|||||+.. +.......++.+|
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAE 81 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCC
Confidence 589999999999999999999887542 222 33455566777888999999999876 4555667789999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceE
Q 029437 90 AVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLE 169 (193)
Q Consensus 90 ~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
++++|+|++++.+. ...++..++.. .+.|+++++||+|+... .++..+.. .. ....
T Consensus 82 ~~i~v~d~~~~~~~--~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~--~~~~~~~~--~~---------------~~~~ 137 (161)
T 2dyk_A 82 VVLFAVDGRAELTQ--ADYEVAEYLRR---KGKPVILVATKVDDPKH--ELYLGPLY--GL---------------GFGD 137 (161)
T ss_dssp EEEEEEESSSCCCH--HHHHHHHHHHH---HTCCEEEEEECCCSGGG--GGGCGGGG--GG---------------SSCS
T ss_pred EEEEEEECCCcccH--hHHHHHHHHHh---cCCCEEEEEECcccccc--hHhHHHHH--hC---------------CCCC
Confidence 99999999885332 22333333332 47899999999999743 11111100 00 1125
Q ss_pred EEEeeeecCCChhhHHHhhhhhcC
Q 029437 170 VFMCSIVRKMGYGDGFKWLSQYIK 193 (193)
Q Consensus 170 ~~~~Sa~~g~gv~el~~~i~~~~~ 193 (193)
+++|||++|.|++++|++|.+.+.
T Consensus 138 ~~~~Sa~~~~gv~~l~~~l~~~l~ 161 (161)
T 2dyk_A 138 PIPTSSEHARGLEELLEAIWERLP 161 (161)
T ss_dssp CEECBTTTTBSHHHHHHHHHHHCC
T ss_pred eEEEecccCCChHHHHHHHHHhCc
Confidence 799999999999999999998763
No 103
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.89 E-value=1.6e-28 Score=175.03 Aligned_cols=173 Identities=17% Similarity=0.241 Sum_probs=117.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCcc-eeE--EEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEE
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQH-QPTQYPT-SEE--LSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVV 92 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~-~~~--~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl 92 (193)
..+.++|+++|++|+|||||++++.+..+... .+|.... ... +......+.+|||||++.+......+++.+|+++
T Consensus 27 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (204)
T 3th5_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL 106 (204)
Confidence 35679999999999999999999998776543 3333322 122 2234467789999999999988888999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEE
Q 029437 93 YLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFM 172 (193)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (193)
+|+|++++.++......|...+... .++.|+++|+||+|+.......+............ .....+++. ....++++
T Consensus 107 lv~D~~~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~-~~~~~~~~ 183 (204)
T 3th5_A 107 ICFSLVSPASFENVRAKWYPEVRHH-CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITY-PQGLAMAKE-IGAVKYLE 183 (204)
Confidence 9999999999888874333333322 23899999999999974322211111111001000 000011111 12237899
Q ss_pred eeeecCCChhhHHHhhhhhc
Q 029437 173 CSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 173 ~Sa~~g~gv~el~~~i~~~~ 192 (193)
|||++|.|++++|++|.+.+
T Consensus 184 vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 184 CSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 99999999999999998764
No 104
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.94 E-value=3.3e-26 Score=161.69 Aligned_cols=154 Identities=19% Similarity=0.253 Sum_probs=104.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEeCCEEEEEEEcCC----------hhhhHhhHHhh
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSIGKIKFKAFDLGG----------HQIARRVWKDY 84 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~~~~~~~D~~G----------~~~~~~~~~~~ 84 (193)
...++|+|+|++|+|||||++++.+..+.. ..++.+.+. .....+ ..+.+||||| ++.+..+...+
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 99 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIN-DELHFVDVPGYGFAKVSKSEREAWGRMIETY 99 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEET-TTEEEEECCCBCCCSSCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEEC-CcEEEEECCCCCccccCHHHHHHHHHHHHHH
Confidence 357899999999999999999999887443 333333222 222233 3789999999 77777777777
Q ss_pred cccC---CEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHH----HHHhhCCCccccCCCc
Q 029437 85 YAKV---DAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEE----LRYHLGLSNFTTGKGK 157 (193)
Q Consensus 85 ~~~~---d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~~ 157 (193)
+..+ |++++|+|++++.+..... .+. .+.. .+.|+++|+||+|+.......+ +.+.+...
T Consensus 100 ~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~-~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~-------- 166 (195)
T 1svi_A 100 ITTREELKAVVQIVDLRHAPSNDDVQ-MYE-FLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNID-------- 166 (195)
T ss_dssp HHHCTTEEEEEEEEETTSCCCHHHHH-HHH-HHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCC--------
T ss_pred HhhhhcCCEEEEEEECCCCCCHHHHH-HHH-HHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHccc--------
Confidence 7766 9999999998876654421 122 2221 5789999999999975433332 32223211
Q ss_pred cccCCCCCcceEEEEeeeecCCChhhHHHhhhhhcC
Q 029437 158 VNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK 193 (193)
Q Consensus 158 ~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~~ 193 (193)
...+++++||++|.|+++++++|.+.++
T Consensus 167 --------~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 167 --------PEDELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp --------TTSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred --------CCCceEEEEccCCCCHHHHHHHHHHHhc
Confidence 2368999999999999999999988763
No 105
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.94 E-value=4.4e-26 Score=160.85 Aligned_cols=157 Identities=20% Similarity=0.243 Sum_probs=108.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeE-EEeCCEEEEEEEcCC----------hhhhHhhHHhhcc
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEE-LSIGKIKFKAFDLGG----------HQIARRVWKDYYA 86 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~D~~G----------~~~~~~~~~~~~~ 86 (193)
...++|+++|++|||||||++++.+..+....++.+..... ....+..+.+||||| +..+..+...++.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 100 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFK 100 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEECCcEEEEECCCCccccCChhhHHHHHHHHHHHHh
Confidence 45689999999999999999999998866555555443322 222244688999999 6667777666666
Q ss_pred cC---CEEEEEEECCChhhH--HHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccC
Q 029437 87 KV---DAVVYLVDAYDKERF--AESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLA 161 (193)
Q Consensus 87 ~~---d~vl~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (193)
.+ |++++|+|+++..+. ..+..++.. .+.|+++|+||+|+..........+......
T Consensus 101 ~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~-------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~----------- 162 (195)
T 3pqc_A 101 NRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS-------LNIPFTIVLTKMDKVKMSERAKKLEEHRKVF----------- 162 (195)
T ss_dssp HCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-------TTCCEEEEEECGGGSCGGGHHHHHHHHHHHH-----------
T ss_pred cCcCceEEEEEecCCCCCCHHHHHHHHHHHH-------cCCCEEEEEEChhcCChHHHHHHHHHHHHHH-----------
Confidence 55 999999999775332 222223222 2789999999999975443333322222111
Q ss_pred CCCCcceEEEEeeeecCCChhhHHHhhhhhcC
Q 029437 162 DSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK 193 (193)
Q Consensus 162 ~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~~ 193 (193)
.....+++++|||++|.|++++|++|.+.++
T Consensus 163 -~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 163 -SKYGEYTIIPTSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp -HSSCCSCEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred -hhcCCCceEEEecCCCCCHHHHHHHHHHHhh
Confidence 0002357899999999999999999988763
No 106
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.93 E-value=1.4e-25 Score=162.47 Aligned_cols=158 Identities=14% Similarity=0.149 Sum_probs=108.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcccc-C--CCCCcceeEEEeCCEEEEEEEcCCh------hh----hHhhHHhh
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQH-Q--PTQYPTSEELSIGKIKFKAFDLGGH------QI----ARRVWKDY 84 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~--~t~~~~~~~~~~~~~~~~~~D~~G~------~~----~~~~~~~~ 84 (193)
...++|+|+|++|||||||++++.+..+... . .|...........+..+.+|||||+ +. +.. ...+
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~-~~~~ 105 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTT-ITAL 105 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHH-HHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHH-HHHh
Confidence 4678999999999999999999999887521 1 2444455556667889999999998 33 222 2344
Q ss_pred cccCCEEEEEEECCChhhHH--HHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC--HHH--HHHhhCCCccccCCCcc
Q 029437 85 YAKVDAVVYLVDAYDKERFA--ESKKELDALLSDEALANVPFLVLGNKIDIPYAAS--EEE--LRYHLGLSNFTTGKGKV 158 (193)
Q Consensus 85 ~~~~d~vl~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~--~~~--~~~~~~~~~~~~~~~~~ 158 (193)
+..+|++++|+|++++.++. ....++..+... ..+.|+++|+||+|+..... .+. ....+....
T Consensus 106 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-------- 175 (228)
T 2qu8_A 106 AHINGVILFIIDISEQCGLTIKEQINLFYSIKSV--FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNV-------- 175 (228)
T ss_dssp HTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC--C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHC--------
T ss_pred hccccEEEEEEecccccCcchHHHHHHHHHHHHh--hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhc--------
Confidence 67889999999999987653 233455544332 24899999999999974322 211 111110000
Q ss_pred ccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 159 NLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 159 ~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
.....+++|||++|.|++++|++|.+.+
T Consensus 176 ------~~~~~~~~~SA~~g~gi~~l~~~l~~~i 203 (228)
T 2qu8_A 176 ------KNPIKFSSFSTLTGVGVEQAKITACELL 203 (228)
T ss_dssp ------CSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ------CCCceEEEEecccCCCHHHHHHHHHHHH
Confidence 0126899999999999999999998764
No 107
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.93 E-value=3.3e-26 Score=159.02 Aligned_cols=150 Identities=21% Similarity=0.236 Sum_probs=107.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc--cC--CCCCcceeEEEeCCEEEEEEEcCChhhh----Hh--h--HHhhcc
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQ--HQ--PTQYPTSEELSIGKIKFKAFDLGGHQIA----RR--V--WKDYYA 86 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~--~~--~t~~~~~~~~~~~~~~~~~~D~~G~~~~----~~--~--~~~~~~ 86 (193)
...+|+++|++|||||||++++.+..+.. .. .|.+.....+..++..+.+|||||+... .. . ....+.
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 82 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIE 82 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHHH
Confidence 45799999999999999999999876432 22 2344455677788888999999997542 11 1 123568
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCc
Q 029437 87 KVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVR 166 (193)
Q Consensus 87 ~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (193)
.+|++++|+|++++.++. ...|+..+... ...++|+++|+||+|+..... .... ..
T Consensus 83 ~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~-~~~~~p~ilv~NK~Dl~~~~~----------~~~~------------~~ 138 (172)
T 2gj8_A 83 QADRVLFMVDGTTTDAVD-PAEIWPEFIAR-LPAKLPITVVRNKADITGETL----------GMSE------------VN 138 (172)
T ss_dssp TCSEEEEEEETTTCCCCS-HHHHCHHHHHH-SCTTCCEEEEEECHHHHCCCC----------EEEE------------ET
T ss_pred hCCEEEEEEECCCCCCHH-HHHHHHHHHHh-cccCCCEEEEEECccCCcchh----------hhhh------------cc
Confidence 999999999999887654 33555555432 235799999999999853210 0100 02
Q ss_pred ceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 167 PLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 167 ~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
..++++|||++|.|++++|++|.+.+
T Consensus 139 ~~~~~~~SA~~g~gv~~l~~~l~~~~ 164 (172)
T 2gj8_A 139 GHALIRLSARTGEGVDVLRNHLKQSM 164 (172)
T ss_dssp TEEEEECCTTTCTTHHHHHHHHHHHC
T ss_pred CCceEEEeCCCCCCHHHHHHHHHHHh
Confidence 36799999999999999999998765
No 108
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.93 E-value=1.1e-25 Score=169.78 Aligned_cols=158 Identities=16% Similarity=0.197 Sum_probs=116.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC--cc--ccCCCCCcceeEEEe-CCEEEEEEEcCChhhh-----HhhHHhhcccC
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDER--LV--QHQPTQYPTSEELSI-GKIKFKAFDLGGHQIA-----RRVWKDYYAKV 88 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~--~~--~~~~t~~~~~~~~~~-~~~~~~~~D~~G~~~~-----~~~~~~~~~~~ 88 (193)
..+||+++|++|||||||++++.+.. +. ...+|.+.....+.+ ++..+.+|||||++.+ ......+++.+
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~a 81 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMV 81 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccC
Confidence 35799999999999999999998873 32 355688877777775 6789999999999988 56777888999
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHcC-CCCCCCcEEEEEeCCCCCCCCCHH--------HHHHhhCCCccccCCCccc
Q 029437 89 DAVVYLVDAYDKERFAESKKELDALLSD-EALANVPFLVLGNKIDIPYAASEE--------ELRYHLGLSNFTTGKGKVN 159 (193)
Q Consensus 89 d~vl~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~pviiv~nK~D~~~~~~~~--------~~~~~~~~~~~~~~~~~~~ 159 (193)
|++++|+|++++++++.+..|...+... ...+++|+++++||+|+....... +..+ +....
T Consensus 82 d~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~-~~~~~--------- 151 (307)
T 3r7w_A 82 QVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSE-TSSEF--------- 151 (307)
T ss_dssp SEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHH-HHHTT---------
T ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHH-HHHHc---------
Confidence 9999999999999888876654333211 113589999999999997421121 1111 11010
Q ss_pred cCCCCCcceEEEEeeeecCCChhhHHHhhhhh
Q 029437 160 LADSNVRPLEVFMCSIVRKMGYGDGFKWLSQY 191 (193)
Q Consensus 160 ~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~ 191 (193)
....+.+++|||++ .|+.++|..+.+.
T Consensus 152 ----g~~~~~~~~tSa~~-~~i~e~~~~iv~~ 178 (307)
T 3r7w_A 152 ----GFPNLIGFPTSIWD-ESLYKAWSQIVCS 178 (307)
T ss_dssp ----TCCSCEEEECCTTS-SHHHHHHHHHHHT
T ss_pred ----CCCCeEEEEeeecC-ChHHHHHHHHHHH
Confidence 00136899999999 8898888887764
No 109
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.93 E-value=2.6e-26 Score=161.50 Aligned_cols=157 Identities=17% Similarity=0.096 Sum_probs=106.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcceeEEEeCCEEEEEEEcCC-----------hhhhHhhHHhhccc-
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTSEELSIGKIKFKAFDLGG-----------HQIARRVWKDYYAK- 87 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~D~~G-----------~~~~~~~~~~~~~~- 87 (193)
++|+++|++|||||||++++.+..+.. ..|+.........+. .+.+||||| ++.+......++..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDN 79 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEecC--CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhh
Confidence 589999999999999999999887654 334444444444444 688999999 66777777666665
Q ss_pred CCEEEEEEECCChhhHHHHH-HHHHH--------HHcCCCCCCCcEEEEEeCCCCCCCC--CHHHHHHhhCCCccccCCC
Q 029437 88 VDAVVYLVDAYDKERFAESK-KELDA--------LLSDEALANVPFLVLGNKIDIPYAA--SEEELRYHLGLSNFTTGKG 156 (193)
Q Consensus 88 ~d~vl~v~d~~~~~~~~~~~-~~~~~--------~~~~~~~~~~pviiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~ 156 (193)
++++++|+++.|..++..+. .|... +.......+.|+++++||+|+.... ..+++.+.++..+.
T Consensus 80 ~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~----- 154 (190)
T 2cxx_A 80 AKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLS----- 154 (190)
T ss_dssp GGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHHHHHHHHHHHHTCCGG-----
T ss_pred hccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcHHHHHHHHHHHhhhhhh-----
Confidence 55555555555555555552 22221 1111122589999999999997543 23335555554330
Q ss_pred ccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 157 KVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 157 ~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
.....+++|||++|.|++++|++|.+.+
T Consensus 155 --------~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 182 (190)
T 2cxx_A 155 --------EIDKVFIPISAKFGDNIERLKNRIFEVI 182 (190)
T ss_dssp --------GHHHHEEECCTTTCTTHHHHHHHHHHHH
T ss_pred --------ccCCcEEEEecCCCCCHHHHHHHHHHhc
Confidence 0124689999999999999999998764
No 110
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.93 E-value=8.4e-25 Score=153.60 Aligned_cols=149 Identities=28% Similarity=0.317 Sum_probs=110.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCC--CCCcceeEEEeCCEEEEEEEcCChhhhH------hhHHhhcc-
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLV-QHQP--TQYPTSEELSIGKIKFKAFDLGGHQIAR------RVWKDYYA- 86 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~D~~G~~~~~------~~~~~~~~- 86 (193)
.++.++|+++|++|||||||++++.+..+. ...+ +.......+.+++..+.+|||||+..+. .+...++.
T Consensus 4 ~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 83 (188)
T 2wjg_A 4 HMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIIN 83 (188)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhc
Confidence 356789999999999999999999987643 2333 3344566677788999999999987653 33444543
Q ss_pred -cCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC----CCHHHHHHhhCCCccccCCCccccC
Q 029437 87 -KVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA----ASEEELRYHLGLSNFTTGKGKVNLA 161 (193)
Q Consensus 87 -~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (193)
.+|++++|+|.++. +....++..+.. .+.|+++++||+|+... ....++.+.++
T Consensus 84 ~~~~~~i~v~d~~~~---~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-------------- 142 (188)
T 2wjg_A 84 EKPDLVVNIVDATAL---ERNLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKILG-------------- 142 (188)
T ss_dssp HCCSEEEEEEEGGGH---HHHHHHHHHHHT----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHT--------------
T ss_pred cCCCEEEEEecchhH---HHHHHHHHHHHh----cCCCEEEEEEhhhccccccchHHHHHHHHHhC--------------
Confidence 58999999999764 445556555543 47899999999998621 12333444333
Q ss_pred CCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 162 DSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 162 ~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
..++++||++|.|++++|++|.+.+
T Consensus 143 ------~~~~~~Sa~~~~~v~~l~~~i~~~~ 167 (188)
T 2wjg_A 143 ------VKVVPLSAAKKMGIEELKKAISIAV 167 (188)
T ss_dssp ------SCEEECBGGGTBSHHHHHHHHHHHH
T ss_pred ------CCeEEEEecCCCCHHHHHHHHHHHH
Confidence 3578999999999999999998765
No 111
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.93 E-value=1.9e-25 Score=165.93 Aligned_cols=147 Identities=25% Similarity=0.241 Sum_probs=109.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-cC--CCCCcceeEEEeCCEEEEEEEcCChhhhHh----------hHHhhc
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQ--PTQYPTSEELSIGKIKFKAFDLGGHQIARR----------VWKDYY 85 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~--~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~----------~~~~~~ 85 (193)
+.++|+++|++|||||||+|++++..+.. .. .|.......+.+.+..+.+|||||...+.. ....++
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~ 81 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHH
Confidence 56899999999999999999999887532 22 244555666777788999999999876541 222232
Q ss_pred --ccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCC----CHHHHHHhhCCCccccCCCccc
Q 029437 86 --AKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAA----SEEELRYHLGLSNFTTGKGKVN 159 (193)
Q Consensus 86 --~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 159 (193)
..+|++++|+|+++.++...+..++... ++|+++++||+|+.... ...++.+.++
T Consensus 82 ~~~~~d~ii~VvD~~~~~~~~~~~~~l~~~-------~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg------------ 142 (274)
T 3i8s_A 82 LSGDADLLINVVDASNLERNLYLTLQLLEL-------GIPCIVALNMLDIAEKQNIRIEIDALSARLG------------ 142 (274)
T ss_dssp HHTCCSEEEEEEEGGGHHHHHHHHHHHHHH-------TCCEEEEEECHHHHHHTTEEECHHHHHHHHT------------
T ss_pred hhcCCCEEEEEecCCChHHHHHHHHHHHhc-------CCCEEEEEECccchhhhhHHHHHHHHHHhcC------------
Confidence 6899999999999876554444444333 79999999999986321 2334444443
Q ss_pred cCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 160 LADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 160 ~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
++++++||++|.|+++++++|.+.+
T Consensus 143 --------~~~i~~SA~~g~gi~el~~~i~~~~ 167 (274)
T 3i8s_A 143 --------CPVIPLVSTRGRGIEALKLAIDRYK 167 (274)
T ss_dssp --------SCEEECCCGGGHHHHHHHHHHHTCC
T ss_pred --------CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999998764
No 112
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.93 E-value=2.3e-25 Score=163.86 Aligned_cols=144 Identities=23% Similarity=0.239 Sum_probs=107.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cC--CCCCcceeEEEeCCEEEEEEEcCChhhhHh----------hHHhhc--
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDERLVQ-HQ--PTQYPTSEELSIGKIKFKAFDLGGHQIARR----------VWKDYY-- 85 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~~~~-~~--~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~----------~~~~~~-- 85 (193)
.+|+++|++|||||||++++++..+.. .. .|.......+.+++..+.+|||||...+.. +...++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~ 81 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVID 81 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhh
Confidence 489999999999999999999886432 22 345566777788889999999999876543 444555
Q ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC----CCHHHHHHhhCCCccccCCCccccC
Q 029437 86 AKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA----ASEEELRYHLGLSNFTTGKGKVNLA 161 (193)
Q Consensus 86 ~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (193)
..+|++++|+|+++.++...+ ...+.. .+.|+++++||+|+... .....+.+.++
T Consensus 82 ~~~d~vi~VvDas~~~~~~~l---~~~l~~----~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg-------------- 140 (256)
T 3iby_A 82 LEYDCIINVIDACHLERHLYL---TSQLFE----LGKPVVVALNMMDIAEHRGISIDTEKLESLLG-------------- 140 (256)
T ss_dssp SCCSEEEEEEEGGGHHHHHHH---HHHHTT----SCSCEEEEEECHHHHHHTTCEECHHHHHHHHC--------------
T ss_pred CCCCEEEEEeeCCCchhHHHH---HHHHHH----cCCCEEEEEEChhcCCcCCcHHHHHHHHHHcC--------------
Confidence 789999999999987554333 233322 37999999999998632 12334444443
Q ss_pred CCCCcceEEEEeeeecCCChhhHHHhhhhh
Q 029437 162 DSNVRPLEVFMCSIVRKMGYGDGFKWLSQY 191 (193)
Q Consensus 162 ~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~ 191 (193)
++++++||++|.|+++++++|.+.
T Consensus 141 ------~~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 141 ------CSVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp ------SCEEECBGGGTBSHHHHHHHHHTC
T ss_pred ------CCEEEEECCCCCCHHHHHHHHHhh
Confidence 357999999999999999999764
No 113
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.93 E-value=6.1e-25 Score=165.03 Aligned_cols=153 Identities=22% Similarity=0.191 Sum_probs=110.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccccC----CCCCcceeEEEeCCEEEEEEEcCChhh--------hHhhHHhhcc
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQ----PTQYPTSEELSIGKIKFKAFDLGGHQI--------ARRVWKDYYA 86 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~D~~G~~~--------~~~~~~~~~~ 86 (193)
+..+|+++|.+|+|||||+|++++..+.... .|..........++..+.+|||||... +......+++
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~ 85 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALA 85 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHHh
Confidence 4457999999999999999999998875322 233333444556789999999999765 4555667789
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC-HHHHHHhhCCCccccCCCccccCCCCC
Q 029437 87 KVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAAS-EEELRYHLGLSNFTTGKGKVNLADSNV 165 (193)
Q Consensus 87 ~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (193)
.+|++++|+|++++.+. ...++...+... ..+.|+++++||+|+..... ..+....+ .
T Consensus 86 ~ad~il~VvD~~~~~~~--~~~~i~~~l~~~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~---~--------------- 144 (301)
T 1wf3_A 86 DVNAVVWVVDLRHPPTP--EDELVARALKPL-VGKVPILLVGNKLDAAKYPEEAMKAYHEL---L--------------- 144 (301)
T ss_dssp SCSEEEEEEETTSCCCH--HHHHHHHHHGGG-TTTSCEEEEEECGGGCSSHHHHHHHHHHT---S---------------
T ss_pred cCCEEEEEEECCCCCCh--HHHHHHHHHHhh-cCCCCEEEEEECcccCCchHHHHHHHHHh---c---------------
Confidence 99999999999886433 234444443332 24799999999999974322 22222222 1
Q ss_pred cceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 166 RPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 166 ~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
...+++++||++|.|+++++++|.+.+
T Consensus 145 ~~~~~~~iSA~~g~gv~~l~~~l~~~l 171 (301)
T 1wf3_A 145 PEAEPRMLSALDERQVAELKADLLALM 171 (301)
T ss_dssp TTSEEEECCTTCHHHHHHHHHHHHTTC
T ss_pred CcCcEEEEeCCCCCCHHHHHHHHHHhc
Confidence 224689999999999999999998754
No 114
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.93 E-value=5.5e-25 Score=162.04 Aligned_cols=147 Identities=22% Similarity=0.277 Sum_probs=109.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCC--CCCcceeEEEeCCEEEEEEEcCChhhhHh------hHHhhc--c
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDERLV-QHQP--TQYPTSEELSIGKIKFKAFDLGGHQIARR------VWKDYY--A 86 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~D~~G~~~~~~------~~~~~~--~ 86 (193)
++.++|+++|++|||||||++++++..+. ...| |.......+.+.+..+.+|||||...+.. +...++ .
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 82 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKG 82 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhc
Confidence 45689999999999999999999987754 2223 44555666777789999999999876542 223444 5
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--C--CCHHHHHHhhCCCccccCCCccccCC
Q 029437 87 KVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--A--ASEEELRYHLGLSNFTTGKGKVNLAD 162 (193)
Q Consensus 87 ~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (193)
.+|++++|+|+++.++. ..++..+.. .+.|+++++||+|+.. . ....++.+.++
T Consensus 83 ~~d~ii~V~D~t~~~~~---~~~~~~l~~----~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg--------------- 140 (258)
T 3a1s_A 83 DADLVILVADSVNPEQS---LYLLLEILE----MEKKVILAMTAIDEAKKTGMKIDRYELQKHLG--------------- 140 (258)
T ss_dssp CCSEEEEEEETTSCHHH---HHHHHHHHT----TTCCEEEEEECHHHHHHTTCCBCHHHHHHHHC---------------
T ss_pred CCCEEEEEeCCCchhhH---HHHHHHHHh----cCCCEEEEEECcCCCCccchHHHHHHHHHHcC---------------
Confidence 89999999999987543 235555543 3799999999999862 1 22344544444
Q ss_pred CCCcceEEEEeeeecCCChhhHHHhhhhh
Q 029437 163 SNVRPLEVFMCSIVRKMGYGDGFKWLSQY 191 (193)
Q Consensus 163 ~~~~~~~~~~~Sa~~g~gv~el~~~i~~~ 191 (193)
++++++||++|.|+++++++|.+.
T Consensus 141 -----~~vi~~SA~~g~gi~el~~~i~~~ 164 (258)
T 3a1s_A 141 -----IPVVFTSSVTGEGLEELKEKIVEY 164 (258)
T ss_dssp -----SCEEECCTTTCTTHHHHHHHHHHH
T ss_pred -----CCEEEEEeeCCcCHHHHHHHHHHH
Confidence 356899999999999999999764
No 115
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.92 E-value=7.1e-25 Score=166.79 Aligned_cols=172 Identities=18% Similarity=0.250 Sum_probs=117.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc-eeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEEE
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPT-SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAVV 92 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~vl 92 (193)
....++|+++|++|+|||||++++.+..+.. ..+|.... ...+..++ ..+.+|||||++.+......++..+|+++
T Consensus 152 ~~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 231 (332)
T 2wkq_A 152 AKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 231 (332)
T ss_dssp HTTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEE
T ss_pred ccceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEE
Confidence 4566899999999999999999999887654 33444332 23334444 45669999999999988888999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEE
Q 029437 93 YLVDAYDKERFAESK-KELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVF 171 (193)
Q Consensus 93 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (193)
+|+|++++.++..+. .|+..+... ..++|+++|+||+|+.......+................ .+.+. .....++
T Consensus 232 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~-~~~~~~~ 307 (332)
T 2wkq_A 232 ICFSLVSPASFHHVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGL-AMAKE-IGAVKYL 307 (332)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH--CTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHH-HHHHH-TTCSEEE
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhh--CCCCcEEEEEEchhcccccchhhhccccccccccHHHHH-HHHHH-cCCcEEE
Confidence 999999999998887 444444332 238999999999999643221111111111110000000 00000 0123789
Q ss_pred EeeeecCCChhhHHHhhhhhc
Q 029437 172 MCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 172 ~~Sa~~g~gv~el~~~i~~~~ 192 (193)
+|||++|.|++++|++|.+.+
T Consensus 308 ~~Sa~~~~gi~~l~~~l~~~~ 328 (332)
T 2wkq_A 308 ECSALTQRGLKTVFDEAIRAV 328 (332)
T ss_dssp ECCTTTCTTHHHHHHHHHHHH
T ss_pred EecCCCCcCHHHHHHHHHHHH
Confidence 999999999999999998754
No 116
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.92 E-value=1.1e-24 Score=164.23 Aligned_cols=157 Identities=20% Similarity=0.207 Sum_probs=113.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccccCC----CCCcceeEEEeC-CEEEEEEEcCChhh----------hHhhHH
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQP----TQYPTSEELSIG-KIKFKAFDLGGHQI----------ARRVWK 82 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~----t~~~~~~~~~~~-~~~~~~~D~~G~~~----------~~~~~~ 82 (193)
...-.|+++|.+|||||||+|++.+..+....+ |..........+ +..+.+|||||+.. +.....
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~ 87 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAK 87 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHH
Confidence 345579999999999999999999988764322 344445556667 89999999999843 335556
Q ss_pred hhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCC-CCCCHHHHHHhhCCCccccCCCccccC
Q 029437 83 DYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIP-YAASEEELRYHLGLSNFTTGKGKVNLA 161 (193)
Q Consensus 83 ~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (193)
.++..+|++++|+|++++.+......|+..+.. .+.|+++++||+|+. ......+..+.+....
T Consensus 88 ~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~----~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~----------- 152 (308)
T 3iev_A 88 QSLEEADVILFMIDATEGWRPRDEEIYQNFIKP----LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKH----------- 152 (308)
T ss_dssp HHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG----GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHC-----------
T ss_pred HHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh----cCCCEEEEEECccCCCCHHHHHHHHHHHHHhc-----------
Confidence 677899999999999988766655444444422 479999999999997 3333333322222111
Q ss_pred CCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 162 DSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 162 ~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
.....++++||++|.|+++++++|.+.+
T Consensus 153 ---~~~~~i~~vSA~~g~gv~~L~~~l~~~l 180 (308)
T 3iev_A 153 ---PELTEIVPISALKGANLDELVKTILKYL 180 (308)
T ss_dssp ---TTCCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred ---cCCCeEEEEeCCCCCCHHHHHHHHHHhC
Confidence 0224689999999999999999998765
No 117
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.92 E-value=6.2e-25 Score=177.06 Aligned_cols=168 Identities=18% Similarity=0.184 Sum_probs=112.9
Q ss_pred hHHHHHHHHHhh-----CCCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcceeEE--------E----eCCE
Q 029437 3 LLDWFYGVLASL-----GLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTSEEL--------S----IGKI 64 (193)
Q Consensus 3 ~~~~~~~~~~~~-----~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~--------~----~~~~ 64 (193)
+.+|++.+.... ......+||+++|.+|||||||++++++..+.. ..+|.+...... . ....
T Consensus 19 i~~yl~~l~~~~~~g~~~~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~ 98 (535)
T 3dpu_A 19 VRQYFQSIEEARSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKEC 98 (535)
T ss_dssp HHHHHHHHHHHHHTTCCCBCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTC
T ss_pred HHHHHHHHHHhhccCcccccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceE
Confidence 567888877621 124678999999999999999999999988754 345665554432 1 2258
Q ss_pred EEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC--CCHHHH
Q 029437 65 KFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA--ASEEEL 142 (193)
Q Consensus 65 ~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~--~~~~~~ 142 (193)
.+.+|||||++.+......+++.+|++++|+|+++.+... .|+..+... .++.|+++|+||+|+... ...++.
T Consensus 99 ~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~~~~~---~~~~~l~~~--~~~~pvilV~NK~Dl~~~~~v~~~~~ 173 (535)
T 3dpu_A 99 LFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTDSNKH---YWLRHIEKY--GGKSPVIVVMNKIDENPSYNIEQKKI 173 (535)
T ss_dssp EEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGGGGGHH---HHHHHHHHH--SSSCCEEEEECCTTTCTTCCCCHHHH
T ss_pred EEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCCchhHH---HHHHHHHHh--CCCCCEEEEEECCCcccccccCHHHH
Confidence 9999999999999888888889999999999998775543 444444322 137999999999999743 233333
Q ss_pred HHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 143 RYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
.+..... ..+++++||++|.|+++++++|.+.+
T Consensus 174 ~~~~~~~-----------------~~~~~~vSA~~g~gi~eL~~~l~~~~ 206 (535)
T 3dpu_A 174 NERFPAI-----------------ENRFHRISCKNGDGVESIAKSLKSAV 206 (535)
T ss_dssp HHHCGGG-----------------TTCEEECCC-----CTTHHHHHHHHH
T ss_pred HHHHHhc-----------------CCceEEEecCcccCHHHHHHHHHHHH
Confidence 3333211 23589999999999999999998764
No 118
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.92 E-value=2.6e-24 Score=152.64 Aligned_cols=157 Identities=20% Similarity=0.285 Sum_probs=117.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCC--cceeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEEE
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQY--PTSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAVV 92 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~vl 92 (193)
...++|+++|++|||||||++++.+..+.. ..||.+ .....+.+.+ +.+.+||++|++.++.....+++.+++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 456899999999999999999999987654 334544 3345566655 56789999999988877777888999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceEE
Q 029437 93 YLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEV 170 (193)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (193)
+|+|+.+..++..+..|+..+... ...+.|+++++||+|+.. ....++....... ..+.+
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~-----------------~~~~~ 144 (199)
T 2f9l_A 83 LVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEK-----------------NNLSF 144 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------TTCEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECcccccccCcCHHHHHHHHHH-----------------cCCeE
Confidence 999999998888877777655322 235789999999999963 2233332211110 12467
Q ss_pred EEeeeecCCChhhHHHhhhhhc
Q 029437 171 FMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 171 ~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
+++||+++.|+++++++|.+.+
T Consensus 145 ~d~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 145 IETSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp EECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHH
Confidence 8899999999999999998754
No 119
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.92 E-value=1.4e-25 Score=168.34 Aligned_cols=159 Identities=18% Similarity=0.289 Sum_probs=111.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc----cCCCCCcceeEEEeCCEEEEEEEcCChhhhHh---hHHhhcccCCEEEEE
Q 029437 22 KILFLGLDNAGKTTLLHMLKDERLVQ----HQPTQYPTSEELSIGKIKFKAFDLGGHQIARR---VWKDYYAKVDAVVYL 94 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~---~~~~~~~~~d~vl~v 94 (193)
||+++|++|+|||||++++.+..+.. ..||.+.....+. ..+++++|||+|+++++. ....++++++++++|
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV 79 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYV 79 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccchhhhhhhhccCCCEEEEE
Confidence 68999999999999999887664433 4577777766553 458999999999999864 467889999999999
Q ss_pred EECCChhhHHHHHHHHHHHHcC--CCCCCCcEEEEEeCCCCCCCCCH----HHHHHhhCCCccccCCCccccCCCCCcce
Q 029437 95 VDAYDKERFAESKKELDALLSD--EALANVPFLVLGNKIDIPYAASE----EELRYHLGLSNFTTGKGKVNLADSNVRPL 168 (193)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~--~~~~~~pviiv~nK~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (193)
+|++++ +.+...+|..++.. ...+++|+++++||+|+...... .++....+..+.... . ....+
T Consensus 80 ~Ditd~--~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~-----~---~~~~i 149 (331)
T 3r7w_B 80 IDSQDE--YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELG-----L---DGVQV 149 (331)
T ss_dssp CCCSSC--TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSS-----C---SCCCE
T ss_pred EECCch--HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhc-----c---cccCc
Confidence 999987 33334444433321 12368999999999999743222 123332222221100 0 01357
Q ss_pred EEEEeeeecCCChhhHHHhhhhhc
Q 029437 169 EVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 169 ~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
.+++|||++ .+|.++|..|.+.+
T Consensus 150 ~f~eTSAkd-~nV~eAFs~iv~~l 172 (331)
T 3r7w_B 150 SFYLTSIFD-HSIYEAFSRIVQKL 172 (331)
T ss_dssp EEECCCSSS-SHHHHHHHHHHTTS
T ss_pred eEEEeccCC-CcHHHHHHHHHHHH
Confidence 899999998 58999999988764
No 120
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.92 E-value=5.8e-25 Score=158.50 Aligned_cols=160 Identities=18% Similarity=0.216 Sum_probs=105.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCc-cccCC----CCCcceeEEE-eCCEEEEEEEcCC----------hhhhHhhH
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDERL-VQHQP----TQYPTSEELS-IGKIKFKAFDLGG----------HQIARRVW 81 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~----t~~~~~~~~~-~~~~~~~~~D~~G----------~~~~~~~~ 81 (193)
...++|+|+|++|+|||||++++.+... ....+ |.......+. ..+..+.+||||| .+.+....
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 106 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLL 106 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHH
Confidence 3568999999999999999999998873 22222 2232333333 3457899999999 34455555
Q ss_pred Hhhccc---CCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHH----HHHhhCCCccccC
Q 029437 82 KDYYAK---VDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEE----LRYHLGLSNFTTG 154 (193)
Q Consensus 82 ~~~~~~---~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~----~~~~~~~~~~~~~ 154 (193)
..++.. +|++++|+|++++.+ .....+...+.. .+.|+++|+||+|+.......+ +.+.+.... .
T Consensus 107 ~~~~~~~~~~d~vi~v~d~~~~~~--~~~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~---~ 178 (223)
T 4dhe_A 107 SSYLQTRPQLCGMILMMDARRPLT--ELDRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYR---D 178 (223)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCC--HHHHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHH---H
T ss_pred HHHHhcCcCcCEEEEEEeCCCCCC--HHHHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhh---h
Confidence 555554 788999999987533 222222333322 5789999999999975332222 122221100 0
Q ss_pred CCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 155 KGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
. ......+++++||++|.|+++++++|.+.+
T Consensus 179 ~-------~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~ 209 (223)
T 4dhe_A 179 A-------GYAGKLTVQLFSALKRTGLDDAHALIESWL 209 (223)
T ss_dssp H-------TCCSCEEEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred c-------ccCCCCeEEEeecCCCcCHHHHHHHHHHhc
Confidence 0 001347899999999999999999998765
No 121
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.92 E-value=9.4e-25 Score=161.74 Aligned_cols=145 Identities=26% Similarity=0.355 Sum_probs=105.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC-ccccCC--CCCcceeEEEeCCEEEEEEEcCChhhhH------hhHHhhcc--cC
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKDER-LVQHQP--TQYPTSEELSIGKIKFKAFDLGGHQIAR------RVWKDYYA--KV 88 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~--t~~~~~~~~~~~~~~~~~~D~~G~~~~~------~~~~~~~~--~~ 88 (193)
.++|+++|++|||||||++++++.. +....| |.......+.+ +..+.+|||||+..+. .+...++. .+
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~ 81 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRA 81 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCC
Confidence 4789999999999999999999875 233333 33444444444 6789999999987764 34444554 69
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC----CCHHHHHHhhCCCccccCCCccccCCCC
Q 029437 89 DAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA----ASEEELRYHLGLSNFTTGKGKVNLADSN 164 (193)
Q Consensus 89 d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (193)
|++++|+|+++.++. ..+...+.. .+.|+++++||+|+... ....++.+.++
T Consensus 82 d~vi~V~D~t~~e~~---~~~~~~l~~----~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg----------------- 137 (272)
T 3b1v_A 82 DSILNVVDATNLERN---LYLTTQLIE----TGIPVTIALNMIDVLDGQGKKINVDKLSYHLG----------------- 137 (272)
T ss_dssp SEEEEEEEGGGHHHH---HHHHHHHHH----TCSCEEEEEECHHHHHHTTCCCCHHHHHHHHT-----------------
T ss_pred CEEEEEecCCchHhH---HHHHHHHHh----cCCCEEEEEEChhhCCcCCcHHHHHHHHHHcC-----------------
Confidence 999999999887543 334444433 48999999999998621 23334444443
Q ss_pred CcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 165 VRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 165 ~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
++++++||++|.|++++|++|.+.+
T Consensus 138 ---~~vi~~SA~~g~gi~el~~~i~~~~ 162 (272)
T 3b1v_A 138 ---VPVVATSALKQTGVDQVVKKAAHTT 162 (272)
T ss_dssp ---SCEEECBTTTTBSHHHHHHHHHHSC
T ss_pred ---CCEEEEEccCCCCHHHHHHHHHHHH
Confidence 3579999999999999999998754
No 122
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.92 E-value=1.3e-25 Score=165.34 Aligned_cols=160 Identities=19% Similarity=0.142 Sum_probs=106.6
Q ss_pred CCCccEEEEEcCC---------CCCHHHHHHHHhcC---Cccc-cCCCC-C--cceeE----------------EEeCCE
Q 029437 17 WQKEAKILFLGLD---------NAGKTTLLHMLKDE---RLVQ-HQPTQ-Y--PTSEE----------------LSIGKI 64 (193)
Q Consensus 17 ~~~~~~i~v~G~~---------~~GKssl~~~l~~~---~~~~-~~~t~-~--~~~~~----------------~~~~~~ 64 (193)
.+..+||+++|.+ |||||||++++.+. .+.. ..+|. + ..... +....+
T Consensus 16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 95 (255)
T 3c5h_A 16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVEC 95 (255)
T ss_dssp CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------
T ss_pred CCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEE
Confidence 5677999999999 99999999999984 4432 22322 1 11111 233457
Q ss_pred EEEEEE-----------------------cCChhhhHhhHHhhcc---------------------cCCEEEEEEECCCh
Q 029437 65 KFKAFD-----------------------LGGHQIARRVWKDYYA---------------------KVDAVVYLVDAYDK 100 (193)
Q Consensus 65 ~~~~~D-----------------------~~G~~~~~~~~~~~~~---------------------~~d~vl~v~d~~~~ 100 (193)
.+.+|| ++|++++..++..++. ++|++++|+|++++
T Consensus 96 ~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~ 175 (255)
T 3c5h_A 96 KMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRG 175 (255)
T ss_dssp CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC-
T ss_pred EEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCC
Confidence 899999 4455545444455554 69999999999998
Q ss_pred --hhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecC
Q 029437 101 --ERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRK 178 (193)
Q Consensus 101 --~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 178 (193)
.+++.+..|+..+.......++|+++|+||+|+......++...... .. ..+.+++|||++|
T Consensus 176 ~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~-~~---------------~~~~~~e~SAk~g 239 (255)
T 3c5h_A 176 MNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFAL-SK---------------KNLQVVETSARSN 239 (255)
T ss_dssp ---CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHH-TS---------------SSCCEEECBTTTT
T ss_pred chhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHH-hc---------------CCCeEEEEECCCC
Confidence 89999988888775432335899999999999963211122111110 00 1246899999999
Q ss_pred CChhhHHHhhhhhc
Q 029437 179 MGYGDGFKWLSQYI 192 (193)
Q Consensus 179 ~gv~el~~~i~~~~ 192 (193)
.|++++|++|.+.+
T Consensus 240 ~gv~elf~~l~~~l 253 (255)
T 3c5h_A 240 VNVDLAFSTLVQLI 253 (255)
T ss_dssp BSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998765
No 123
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.91 E-value=4.9e-24 Score=158.18 Aligned_cols=148 Identities=18% Similarity=0.188 Sum_probs=109.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-cCC--CCCcceeEEEeCCEEEEEEEcCChhhhHh------hHHhhc--cc
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQP--TQYPTSEELSIGKIKFKAFDLGGHQIARR------VWKDYY--AK 87 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~--t~~~~~~~~~~~~~~~~~~D~~G~~~~~~------~~~~~~--~~ 87 (193)
+.++|+++|++|||||||++++++..+.. ..+ |.......+.+.+..+.+|||||...+.. ....++ ..
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 81 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGN 81 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTC
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccC
Confidence 45799999999999999999999887632 223 44455667778888999999999876543 344444 68
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC----CCCHHHHHHhhCCCccccCCCccccCCC
Q 029437 88 VDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY----AASEEELRYHLGLSNFTTGKGKVNLADS 163 (193)
Q Consensus 88 ~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (193)
+|++++|+|+++.+ ....++..+... ...|+++++||+|+.. .....++.+.++
T Consensus 82 ~d~vi~v~D~~~~~---~~~~~~~~~~~~---~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg---------------- 139 (271)
T 3k53_A 82 ADVIVDIVDSTCLM---RNLFLTLELFEM---EVKNIILVLNKFDLLKKKGAKIDIKKMRKELG---------------- 139 (271)
T ss_dssp CSEEEEEEEGGGHH---HHHHHHHHHHHT---TCCSEEEEEECHHHHHHHTCCCCHHHHHHHHS----------------
T ss_pred CcEEEEEecCCcch---hhHHHHHHHHhc---CCCCEEEEEEChhcCcccccHHHHHHHHHHcC----------------
Confidence 99999999998864 233444455433 2399999999999751 223444555554
Q ss_pred CCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 164 NVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 164 ~~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
++++++||++|.|+++++++|.+.+
T Consensus 140 ----~~~~~~Sa~~g~gi~~l~~~i~~~~ 164 (271)
T 3k53_A 140 ----VPVIPTNAKKGEGVEELKRMIALMA 164 (271)
T ss_dssp ----SCEEECBGGGTBTHHHHHHHHHHHH
T ss_pred ----CcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3468999999999999999997653
No 124
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.91 E-value=2.9e-24 Score=169.16 Aligned_cols=157 Identities=13% Similarity=0.100 Sum_probs=111.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc--cC--CCCCcceeEEEeCCEEEEEEEcCCh----------hhhHhhHH-h
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQ--HQ--PTQYPTSEELSIGKIKFKAFDLGGH----------QIARRVWK-D 83 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~--~~--~t~~~~~~~~~~~~~~~~~~D~~G~----------~~~~~~~~-~ 83 (193)
..++|+++|.+|+|||||++++++.++.. .. .|.+.....+.+++..+.+|||||+ +.+..... .
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~ 253 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALK 253 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHH
Confidence 45899999999999999999999887642 22 2455556677788889999999998 45554433 4
Q ss_pred hcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC--HHHHHHhhCCCccccCCCccccC
Q 029437 84 YYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAAS--EEELRYHLGLSNFTTGKGKVNLA 161 (193)
Q Consensus 84 ~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 161 (193)
++..+|++++|+|++++.+.+.. .++..+.. .+.|+++++||+|+..... .++..+.+.....
T Consensus 254 ~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~---------- 318 (436)
T 2hjg_A 254 AIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQ---------- 318 (436)
T ss_dssp HHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH----TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCG----------
T ss_pred HHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH----cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcc----------
Confidence 67889999999999998776554 44444432 4799999999999975433 2333333221110
Q ss_pred CCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 162 DSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 162 ~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
.....+++++||++|.|++++|+.|.+.+
T Consensus 319 --~~~~~~~~~~SA~tg~~v~~l~~~i~~~~ 347 (436)
T 2hjg_A 319 --FLDYAPILFMSALTKKRIHTLMPAIIKAS 347 (436)
T ss_dssp --GGTTSCEEECCTTTCTTGGGHHHHHHHHH
T ss_pred --cCCCCCEEEEecccCCCHHHHHHHHHHHH
Confidence 00235789999999999999999887653
No 125
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.91 E-value=4.3e-24 Score=169.07 Aligned_cols=153 Identities=22% Similarity=0.215 Sum_probs=96.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcc--ccC--CCCCcceeEEEeCCEEEEEEEcCChhhhHhhH--------Hhh
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLV--QHQ--PTQYPTSEELSIGKIKFKAFDLGGHQIARRVW--------KDY 84 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~--~~~--~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~--------~~~ 84 (193)
....++|+++|++|+|||||+|++.+.+.. ... .|.+.....+..++..+.+|||||...+.... ..+
T Consensus 230 ~r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~ 309 (476)
T 3gee_A 230 VSEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMK 309 (476)
T ss_dssp HHHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC--------------------CC
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence 346789999999999999999999988633 222 25566667788899999999999987755432 335
Q ss_pred cccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHH--HHHhhCCCccccCCCccccCC
Q 029437 85 YAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEE--LRYHLGLSNFTTGKGKVNLAD 162 (193)
Q Consensus 85 ~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 162 (193)
+..+|++++|+|++++.++.+... +..++... .++|+++|+||+|+......+. +.+.
T Consensus 310 ~~~aD~vl~VvD~s~~~s~~~~~~-~~~~l~~l--~~~piIvV~NK~Dl~~~~~~~~~~l~~~----------------- 369 (476)
T 3gee_A 310 MAEADLILYLLDLGTERLDDELTE-IRELKAAH--PAAKFLTVANKLDRAANADALIRAIADG----------------- 369 (476)
T ss_dssp CSSCSEEEEEEETTTCSSGGGHHH-HHHHHHHC--TTSEEEEEEECTTSCTTTHHHHHHHHHH-----------------
T ss_pred cccCCEEEEEEECCCCcchhhhHH-HHHHHHhc--CCCCEEEEEECcCCCCccchhHHHHHhc-----------------
Confidence 789999999999998876543222 12222222 2799999999999975433221 1111
Q ss_pred CCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 163 SNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 163 ~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
...+++++||++|.|+++++++|.+.+
T Consensus 370 ---~~~~~i~vSAktg~GI~eL~~~i~~~~ 396 (476)
T 3gee_A 370 ---TGTEVIGISALNGDGIDTLKQHMGDLV 396 (476)
T ss_dssp ---HTSCEEECBTTTTBSHHHHHHHHTHHH
T ss_pred ---CCCceEEEEECCCCCHHHHHHHHHHHH
Confidence 013579999999999999999998764
No 126
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.91 E-value=9e-24 Score=167.33 Aligned_cols=149 Identities=26% Similarity=0.314 Sum_probs=112.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcc--ccC--CCCCcceeEEEeCCEEEEEEEcCChh-hhH--------hhHHhhc
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDERLV--QHQ--PTQYPTSEELSIGKIKFKAFDLGGHQ-IAR--------RVWKDYY 85 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~--~~~--~t~~~~~~~~~~~~~~~~~~D~~G~~-~~~--------~~~~~~~ 85 (193)
..++|+++|.||+|||||+|++.+.++. ... .|.+.....+.+++..+.+|||||.. ... .....++
T Consensus 242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~ 321 (482)
T 1xzp_A 242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEI 321 (482)
T ss_dssp HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred CCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHh
Confidence 4589999999999999999999987643 222 36667778888899999999999987 432 1234567
Q ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCC
Q 029437 86 AKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNV 165 (193)
Q Consensus 86 ~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (193)
..+|++|+|+|++++.+++.. +.+.. + .+.|+++|+||+|+......+++.+...
T Consensus 322 ~~aD~vl~VvD~s~~~s~~~~-~il~~-l-----~~~piivV~NK~DL~~~~~~~~~~~~~~------------------ 376 (482)
T 1xzp_A 322 EKADIVLFVLDASSPLDEEDR-KILER-I-----KNKRYLVVINKVDVVEKINEEEIKNKLG------------------ 376 (482)
T ss_dssp HHCSEEEEEEETTSCCCHHHH-HHHHH-H-----TTSSEEEEEEECSSCCCCCHHHHHHHHT------------------
T ss_pred hcccEEEEEecCCCCCCHHHH-HHHHH-h-----cCCCEEEEEECcccccccCHHHHHHHhc------------------
Confidence 899999999999888665442 33322 2 3789999999999976545455444322
Q ss_pred cceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 166 RPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 166 ~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
...+++++||++|.|+++++++|.+.+
T Consensus 377 ~~~~~i~iSAktg~Gi~eL~~~l~~~~ 403 (482)
T 1xzp_A 377 TDRHMVKISALKGEGLEKLEESIYRET 403 (482)
T ss_dssp CSTTEEEEEGGGTCCHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 113579999999999999999998753
No 127
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.90 E-value=8.1e-24 Score=161.64 Aligned_cols=135 Identities=19% Similarity=0.297 Sum_probs=102.5
Q ss_pred CCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCC----------hhhHHHHHHHHHHHHcCCCCC
Q 029437 51 TQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYD----------KERFAESKKELDALLSDEALA 120 (193)
Q Consensus 51 t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~ 120 (193)
|.+.....+.++++.+.+|||+|+++++..+..++++++++|+|+|+++ .+++.+...++..+.+.....
T Consensus 180 T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~ 259 (353)
T 1cip_A 180 TTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFT 259 (353)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGT
T ss_pred eeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCcccc
Confidence 4455556677788999999999999999999999999999999999998 567999999999998766667
Q ss_pred CCcEEEEEeCCCCCC-----------------CCCHHHHHHhhCCCccccCCCccccCC-CCCcceEEEEeeeecCCChh
Q 029437 121 NVPFLVLGNKIDIPY-----------------AASEEELRYHLGLSNFTTGKGKVNLAD-SNVRPLEVFMCSIVRKMGYG 182 (193)
Q Consensus 121 ~~pviiv~nK~D~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Sa~~g~gv~ 182 (193)
++|+++++||+|+.. ..+.++..+.....+.. +.. .....+.+++|||++|.||+
T Consensus 260 ~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~-------l~~~~~~~~~~~~etSA~~~~nV~ 332 (353)
T 1cip_A 260 DTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFED-------LNKRKDTKEIYTHFTCATDTKNVQ 332 (353)
T ss_dssp TSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHT-------TCSCTTTCCEEEEECCTTCHHHHH
T ss_pred CCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHH-------hhcccCCCceEEEEEECcCchhHH
Confidence 899999999999851 12333332222211100 000 01145789999999999999
Q ss_pred hHHHhhhhhc
Q 029437 183 DGFKWLSQYI 192 (193)
Q Consensus 183 el~~~i~~~~ 192 (193)
++|+++.+.+
T Consensus 333 ~vF~~v~~~i 342 (353)
T 1cip_A 333 FVFDAVTDVI 342 (353)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998754
No 128
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.90 E-value=5.9e-23 Score=144.83 Aligned_cols=157 Identities=19% Similarity=0.261 Sum_probs=117.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCc--ceeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEEE
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYP--TSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAVV 92 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~vl 92 (193)
...++|+++|++|||||||++++.+..+.. ..+|.+. ....+.+.+ +.+.+||++|..++......+++.+++++
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 106 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGAL 106 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEE
Confidence 456899999999999999999999988653 4455543 345566665 45667999999888877777888899999
Q ss_pred EEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceEE
Q 029437 93 YLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEV 170 (193)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (193)
+|+|..+..+++++..|+..+... ...+.|+++++||+|+.. ....++....... ..+.+
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~-----------------~~~~~ 168 (191)
T 1oix_A 107 LVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEK-----------------NGLSF 168 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------TTCEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHHHH-----------------cCCEE
Confidence 999999998888777776655321 234789999999999963 2222222111110 12467
Q ss_pred EEeeeecCCChhhHHHhhhhhc
Q 029437 171 FMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 171 ~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
+++||+++.|+++++++|.+.+
T Consensus 169 ld~Sald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 169 IETSALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp EECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHh
Confidence 8899999999999999998765
No 129
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.90 E-value=5.5e-23 Score=158.08 Aligned_cols=156 Identities=17% Similarity=0.220 Sum_probs=112.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc---cCCCCCcceeEEEeCCEEEEEEEcCChhhh---------HhhHHhhc
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQ---HQPTQYPTSEELSIGKIKFKAFDLGGHQIA---------RRVWKDYY 85 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~---------~~~~~~~~ 85 (193)
...++|+++|++|||||||++++.+..+.. ...|.......+...+..+.+|||||.... ........
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 244 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALR 244 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHH
Confidence 466899999999999999999999877432 223555566666777889999999997432 12222344
Q ss_pred ccCCEEEEEEECCChh--hHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCC
Q 029437 86 AKVDAVVYLVDAYDKE--RFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADS 163 (193)
Q Consensus 86 ~~~d~vl~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (193)
..+|++++|+|++++. ++.....++..+..... +.|+++|+||+|+......++...... .
T Consensus 245 ~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~--~~piilV~NK~Dl~~~~~~~~~~~~~~--~------------- 307 (357)
T 2e87_A 245 YLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK--DLPFLVVINKIDVADEENIKRLEKFVK--E------------- 307 (357)
T ss_dssp GTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--TSCEEEEECCTTTCCHHHHHHHHHHHH--H-------------
T ss_pred hcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--CCCEEEEEECcccCChHHHHHHHHHHH--h-------------
Confidence 5789999999998876 56666677776654322 799999999999974322222222111 0
Q ss_pred CCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 164 NVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 164 ~~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
...+++++||++|.|+++++++|.+.+
T Consensus 308 --~~~~~~~iSA~~g~gi~~l~~~i~~~l 334 (357)
T 2e87_A 308 --KGLNPIKISALKGTGIDLVKEEIIKTL 334 (357)
T ss_dssp --TTCCCEECBTTTTBTHHHHHHHHHHHH
T ss_pred --cCCCeEEEeCCCCcCHHHHHHHHHHHH
Confidence 124578999999999999999998764
No 130
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.90 E-value=1.1e-23 Score=151.30 Aligned_cols=123 Identities=24% Similarity=0.330 Sum_probs=94.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhccc----CCEEE
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAK----VDAVV 92 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~----~d~vl 92 (193)
....++|+++|++|+|||||++++.+..+....++..+... ..+....+.+|||||++.++..+..++.. +|+++
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i 87 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA-ADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLI 87 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEE-TTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEE
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEE-EEeeCceEEEEECCCcHHHHHHHHHHHHhccccCCEEE
Confidence 45678999999999999999999998876543222222211 12255789999999999998877777766 89999
Q ss_pred EEEECC-ChhhHHHHHHHHHHHHcCC---CCCCCcEEEEEeCCCCCCCCCHH
Q 029437 93 YLVDAY-DKERFAESKKELDALLSDE---ALANVPFLVLGNKIDIPYAASEE 140 (193)
Q Consensus 93 ~v~d~~-~~~~~~~~~~~~~~~~~~~---~~~~~pviiv~nK~D~~~~~~~~ 140 (193)
+|+|++ +++++.....++..++... ...++|+++++||+|+......+
T Consensus 88 ~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~ 139 (218)
T 1nrj_B 88 FMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPS 139 (218)
T ss_dssp EEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHH
T ss_pred EEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHH
Confidence 999999 8888888888888876532 23589999999999998665533
No 131
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.90 E-value=1.2e-23 Score=160.09 Aligned_cols=154 Identities=21% Similarity=0.267 Sum_probs=111.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc---cCCCCCcceeEEEeCC-EEEEEEEcCChhh----hHhhHHh---hcccCC
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDERLVQ---HQPTQYPTSEELSIGK-IKFKAFDLGGHQI----ARRVWKD---YYAKVD 89 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~-~~~~~~D~~G~~~----~~~~~~~---~~~~~d 89 (193)
.+|+++|.+|||||||++++++..... ..+|..++...+.+.+ ..+.+|||||... +..+... .+..+|
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d 238 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR 238 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhcc
Confidence 368999999999999999998876431 2346677777777775 7999999999643 1222222 345699
Q ss_pred EEEEEEECCC---hhhHHHHHHHHHHHHcCC-CCCCCcEEEEEeCCCCCCCCC-HHHHHHhhCCCccccCCCccccCCCC
Q 029437 90 AVVYLVDAYD---KERFAESKKELDALLSDE-ALANVPFLVLGNKIDIPYAAS-EEELRYHLGLSNFTTGKGKVNLADSN 164 (193)
Q Consensus 90 ~vl~v~d~~~---~~~~~~~~~~~~~~~~~~-~~~~~pviiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (193)
++++|+|+++ +++++....++.++.... ...++|+++|+||+|+..... .+++.+.+..
T Consensus 239 ~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~~---------------- 302 (342)
T 1lnz_A 239 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTD---------------- 302 (342)
T ss_dssp EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCCS----------------
T ss_pred EEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHHhhc----------------
Confidence 9999999988 677877777777765432 235899999999999974211 1122222221
Q ss_pred CcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 165 VRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 165 ~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
..+++++||+++.|+++++++|.+.+
T Consensus 303 --~~~v~~iSA~tg~gi~eL~~~l~~~l 328 (342)
T 1lnz_A 303 --DYPVFPISAVTREGLRELLFEVANQL 328 (342)
T ss_dssp --CCCBCCCSSCCSSTTHHHHHHHHHHH
T ss_pred --CCCEEEEECCCCcCHHHHHHHHHHHH
Confidence 13578999999999999999998765
No 132
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.90 E-value=3.7e-23 Score=161.36 Aligned_cols=164 Identities=16% Similarity=0.156 Sum_probs=111.3
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhcCCccccC----CC--------------CCc-----ceeEEEeCCEEEEEEEcC
Q 029437 16 LWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQ----PT--------------QYP-----TSEELSIGKIKFKAFDLG 72 (193)
Q Consensus 16 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~----~t--------------~~~-----~~~~~~~~~~~~~~~D~~ 72 (193)
..+..++|+++|++|+|||||++++++....... .+ ... ...........+.+||||
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP 83 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP 83 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECC
Confidence 3567899999999999999999999875322100 00 000 000011223789999999
Q ss_pred ChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccc
Q 029437 73 GHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFT 152 (193)
Q Consensus 73 G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~ 152 (193)
|++.+...+...+..+|++++|+|++++.++.+..+++...... ...|+++++||+|+.......+..+++....
T Consensus 84 Gh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l-- 158 (403)
T 3sjy_A 84 GHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEALSQYRQIKQFT-- 158 (403)
T ss_dssp CCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHHHHH--
T ss_pred CcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc---CCCCEEEEEECccccchHHHHHHHHHHHHHH--
Confidence 99999998888999999999999999876555565555544221 2358999999999974332222222221100
Q ss_pred cCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 153 TGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
.......++++++||++|.|+++++++|.+.+
T Consensus 159 --------~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l 190 (403)
T 3sjy_A 159 --------KGTWAENVPIIPVSALHKINIDSLIEGIEEYI 190 (403)
T ss_dssp --------TTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred --------HhhCCCCCEEEEEECCCCcChHHHHHHHHHhC
Confidence 00011346799999999999999999998754
No 133
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.90 E-value=3.5e-23 Score=164.51 Aligned_cols=162 Identities=16% Similarity=0.100 Sum_probs=111.7
Q ss_pred hCCCCCccEEEEEcCCCCCHHHHHHHHhcCC----c---cc---cCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHh
Q 029437 14 LGLWQKEAKILFLGLDNAGKTTLLHMLKDER----L---VQ---HQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKD 83 (193)
Q Consensus 14 ~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~----~---~~---~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~ 83 (193)
....+++++|+++|++++|||||+++|.+.. . .. ...|.+.....+.+++..+.+|||||++.+...+..
T Consensus 13 ~~~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~ 92 (482)
T 1wb1_A 13 PHMDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVS 92 (482)
T ss_dssp CCCCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHH
T ss_pred hhhcCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHHHHH
Confidence 3345678999999999999999999998766 1 11 223556666677778899999999999999888888
Q ss_pred hcccCCEEEEEEECCC---hhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCcccc
Q 029437 84 YYAKVDAVVYLVDAYD---KERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNL 160 (193)
Q Consensus 84 ~~~~~d~vl~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (193)
.+..+|++++|+|+++ +++.+.+ ... .. .++|+++++||+|+.+....++..+++...... ..
T Consensus 93 ~~~~aD~~ilVvda~~g~~~qt~e~l----~~~-~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~-~~----- 158 (482)
T 1wb1_A 93 AADIIDLALIVVDAKEGPKTQTGEHM----LIL-DH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQS-TH----- 158 (482)
T ss_dssp HTTSCCEEEEEEETTTCSCHHHHHHH----HHH-HH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHH-SS-----
T ss_pred HHhhCCEEEEEEecCCCccHHHHHHH----HHH-HH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhh-hc-----
Confidence 8899999999999987 3333322 222 11 378899999999997532222222222111100 00
Q ss_pred CCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 161 ADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 161 ~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
.....+++++||++|.|+++++++|.+.+
T Consensus 159 ---~~~~~~ii~vSA~~g~gI~~L~~~L~~~i 187 (482)
T 1wb1_A 159 ---NLKNSSIIPISAKTGFGVDELKNLIITTL 187 (482)
T ss_dssp ---SGGGCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ---ccccceEEEEECcCCCCHHHHHHHHHHhh
Confidence 01246789999999999999999998753
No 134
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.89 E-value=5.6e-23 Score=154.99 Aligned_cols=136 Identities=18% Similarity=0.257 Sum_probs=102.1
Q ss_pred CCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECC----------ChhhHHHHHHHHHHHHcCCCC
Q 029437 50 PTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAY----------DKERFAESKKELDALLSDEAL 119 (193)
Q Consensus 50 ~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~----------~~~~~~~~~~~~~~~~~~~~~ 119 (193)
||.|.....+..+++.+++|||+|+++++..+..++++++++|+|+|++ +.+++.+...++..+.+....
T Consensus 153 ~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~ 232 (327)
T 3ohm_A 153 PTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWF 232 (327)
T ss_dssp CCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGG
T ss_pred ceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhcc
Confidence 4556666778888999999999999999999999999999999999654 678899999999999887677
Q ss_pred CCCcEEEEEeCCCCCC------------------CCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCCh
Q 029437 120 ANVPFLVLGNKIDIPY------------------AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGY 181 (193)
Q Consensus 120 ~~~pviiv~nK~D~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv 181 (193)
.++|+++++||+|+.. ..+.++..+.+...+.. +.......+.+++|||+++.||
T Consensus 233 ~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~-------~~~~~~~~i~~~~TsA~d~~nV 305 (327)
T 3ohm_A 233 QNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVD-------LNPDSDKIIYSHFTCATDTENI 305 (327)
T ss_dssp TTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHS-------SCTTTTSCEEEEECCTTCHHHH
T ss_pred CCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHh-------hcccccCCcEEEEEEeecCHHH
Confidence 8999999999999862 12222222111111100 0011124567889999999999
Q ss_pred hhHHHhhhhhc
Q 029437 182 GDGFKWLSQYI 192 (193)
Q Consensus 182 ~el~~~i~~~~ 192 (193)
+++|+.+.+.+
T Consensus 306 ~~vF~~v~~~I 316 (327)
T 3ohm_A 306 RFVFAAVKDTI 316 (327)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999987654
No 135
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.89 E-value=9.5e-24 Score=166.24 Aligned_cols=149 Identities=18% Similarity=0.262 Sum_probs=100.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccccCC----CCCcceeEEEeCCEEEEEEEcCChh--------hhHhhHHhhccc
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKDERLVQHQP----TQYPTSEELSIGKIKFKAFDLGGHQ--------IARRVWKDYYAK 87 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~G~~--------~~~~~~~~~~~~ 87 (193)
..+|+++|.+|+|||||+|++.+..+....+ |.+.....+.+.+..+.+|||||.. .+......++..
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 82 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE 82 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence 3689999999999999999999877653333 3344555666777899999999985 566677778899
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcc
Q 029437 88 VDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRP 167 (193)
Q Consensus 88 ~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (193)
+|++++|+|+.++.+.. ..++..++.. .++|+++++||+|+.... .+. ..+.. ...
T Consensus 83 ad~il~vvD~~~~~~~~--d~~~~~~l~~---~~~pvilv~NK~D~~~~~--~~~-----~~~~~------------lg~ 138 (436)
T 2hjg_A 83 ADVIIFMVNGREGVTAA--DEEVAKILYR---TKKPVVLAVNKLDNTEMR--ANI-----YDFYS------------LGF 138 (436)
T ss_dssp CSEEEEEEETTTCSCHH--HHHHHHHHTT---CCSCEEEEEECCCC-------CC-----CSSGG------------GSS
T ss_pred CCEEEEEEeCCCCCCHH--HHHHHHHHHH---cCCCEEEEEECccCccch--hhH-----HHHHH------------cCC
Confidence 99999999998865532 3445555443 588999999999986421 000 01100 011
Q ss_pred eEEEEeeeecCCChhhHHHhhhhhc
Q 029437 168 LEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 168 ~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
..++++||++|.|+++++++|.+.+
T Consensus 139 ~~~~~iSA~~g~gv~~L~~~i~~~l 163 (436)
T 2hjg_A 139 GEPYPISGTHGLGLGDLLDAVAEHF 163 (436)
T ss_dssp CCCEECBTTTTBTHHHHHHHHHHTG
T ss_pred CCeEEEeCcCCCChHHHHHHHHHhc
Confidence 2568999999999999999998765
No 136
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.89 E-value=3.3e-23 Score=163.28 Aligned_cols=149 Identities=20% Similarity=0.225 Sum_probs=101.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc--ccC--CCCCcceeEEEeCCEEEEEEEcCChhh---------hHhhHHhhccc
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDERLV--QHQ--PTQYPTSEELSIGKIKFKAFDLGGHQI---------ARRVWKDYYAK 87 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~~~--~~~--~t~~~~~~~~~~~~~~~~~~D~~G~~~---------~~~~~~~~~~~ 87 (193)
.+|+++|.||+|||||+|++++.... ... .|.+.....+.+.+..+.+|||||... ++.....++..
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE 81 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHh
Confidence 47999999999999999999988743 222 355667778888999999999999653 34556677899
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHH-HHhhCCCccccCCCccccCCCCCc
Q 029437 88 VDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEEL-RYHLGLSNFTTGKGKVNLADSNVR 166 (193)
Q Consensus 88 ~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 166 (193)
+|++++|+|+.++.+. ...++..++.. .++|+++++||+|+.... ..+. .+.... .
T Consensus 82 ad~il~V~D~~~~~~~--~d~~i~~~l~~---~~~p~ilv~NK~D~~~~~-~~~~~~~~~~l-----------------g 138 (439)
T 1mky_A 82 ADLVLFVVDGKRGITK--EDESLADFLRK---STVDTILVANKAENLREF-EREVKPELYSL-----------------G 138 (439)
T ss_dssp CSEEEEEEETTTCCCH--HHHHHHHHHHH---HTCCEEEEEESCCSHHHH-HHHTHHHHGGG-----------------S
T ss_pred CCEEEEEEECCCCCCH--HHHHHHHHHHH---cCCCEEEEEeCCCCcccc-HHHHHHHHHhc-----------------C
Confidence 9999999999875432 22233333322 378999999999985210 1111 111111 1
Q ss_pred ceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 167 PLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 167 ~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
..+++++||++|.|+++++++|.+.+
T Consensus 139 ~~~~~~iSA~~g~gv~~L~~~i~~~l 164 (439)
T 1mky_A 139 FGEPIPVSAEHNINLDTMLETIIKKL 164 (439)
T ss_dssp SCSCEECBTTTTBSHHHHHHHHHHHH
T ss_pred CCCEEEEeccCCCCHHHHHHHHHHhc
Confidence 11368999999999999999997654
No 137
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.89 E-value=5.7e-23 Score=157.44 Aligned_cols=133 Identities=19% Similarity=0.329 Sum_probs=92.7
Q ss_pred CcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCC----------hhhHHHHHHHHHHHHcCCCCCCC
Q 029437 53 YPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYD----------KERFAESKKELDALLSDEALANV 122 (193)
Q Consensus 53 ~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 122 (193)
+.....+.++++.+.+|||+|++.++..+..++.+++++|+|+|+++ .+++.+...++..+.+.....++
T Consensus 190 Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~ 269 (362)
T 1zcb_A 190 GIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNV 269 (362)
T ss_dssp SEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTS
T ss_pred ceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCC
Confidence 44445566778999999999999999999999999999999999998 77899999999999876666789
Q ss_pred cEEEEEeCCCCCC-----------------C-CCHHHHHHhhCCCccccCCCccccCCCC-CcceEEEEeeeecCCChhh
Q 029437 123 PFLVLGNKIDIPY-----------------A-ASEEELRYHLGLSNFTTGKGKVNLADSN-VRPLEVFMCSIVRKMGYGD 183 (193)
Q Consensus 123 pviiv~nK~D~~~-----------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~g~gv~e 183 (193)
|+|+++||+|+.. . .+.++..+.....+. .+.+.. ...+.+++|||++|.||++
T Consensus 270 piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~-------~l~~~~~~~~~~~~~tSA~d~~nV~~ 342 (362)
T 1zcb_A 270 SIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFR-------GKRRDQQQRPLYHHFTTAINTENIRL 342 (362)
T ss_dssp EEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHH-------TTCSSCC--CCEEEECCTTCHHHHHH
T ss_pred CEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHH-------HhhcccCCCceEEEEEecCCchhHHH
Confidence 9999999999851 1 233332222100000 000100 1346789999999999999
Q ss_pred HHHhhhhhc
Q 029437 184 GFKWLSQYI 192 (193)
Q Consensus 184 l~~~i~~~~ 192 (193)
+|+++.+.+
T Consensus 343 vF~~v~~~i 351 (362)
T 1zcb_A 343 VFRDVKDTI 351 (362)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999987654
No 138
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.89 E-value=2.5e-23 Score=164.68 Aligned_cols=158 Identities=13% Similarity=0.132 Sum_probs=111.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcc--ccC--CCCCcceeEEEeCCEEEEEEEcCC----------hhhhHhhHH-
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDERLV--QHQ--PTQYPTSEELSIGKIKFKAFDLGG----------HQIARRVWK- 82 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~--~~~--~t~~~~~~~~~~~~~~~~~~D~~G----------~~~~~~~~~- 82 (193)
...++|+++|.+|+|||||++++.+.+.. ... .|.+.....+..++..+.+||||| ++.+.....
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~ 272 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRAL 272 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHH
Confidence 45689999999999999999999977632 222 245556677888888999999999 566666544
Q ss_pred hhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCC--CHHHHHHhhCCCccccCCCcccc
Q 029437 83 DYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAA--SEEELRYHLGLSNFTTGKGKVNL 160 (193)
Q Consensus 83 ~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 160 (193)
.++..+|++++|+|+++... .....++..+.. .+.|+++|+||+|+.... ..++..+......
T Consensus 273 ~~~~~ad~~llviD~~~~~~-~~~~~~~~~~~~----~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~---------- 337 (456)
T 4dcu_A 273 KAIDRSEVVAVVLDGEEGII-EQDKRIAGYAHE----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHF---------- 337 (456)
T ss_dssp HHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHH----TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHC----------
T ss_pred HHHhhCCEEEEEEeCCCCcC-HHHHHHHHHHHH----cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhc----------
Confidence 36789999999999987533 222333333322 479999999999997432 2334333332111
Q ss_pred CCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 161 ADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 161 ~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
......+++++||++|.|++++|++|.+.+
T Consensus 338 --~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~ 367 (456)
T 4dcu_A 338 --QFLDYAPILFMSALTKKRIHTLMPAIIKAS 367 (456)
T ss_dssp --GGGTTSCEEECCTTTCTTGGGHHHHHHHHH
T ss_pred --ccCCCCCEEEEcCCCCcCHHHHHHHHHHHH
Confidence 001235789999999999999999998754
No 139
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.89 E-value=1.6e-23 Score=163.31 Aligned_cols=150 Identities=20% Similarity=0.276 Sum_probs=106.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc----cCCCCCcceeEEEeCCE-EEEEEEcCChhhhHhh-------HHhhcc
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQ----HQPTQYPTSEELSIGKI-KFKAFDLGGHQIARRV-------WKDYYA 86 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~-~~~~~D~~G~~~~~~~-------~~~~~~ 86 (193)
..++|+|+|++|+|||||++++.+.++.. ...|.......+.+.+. .+.+|||||+..+..+ ...++.
T Consensus 33 ~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l~ 112 (423)
T 3qq5_A 33 FRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVFY 112 (423)
T ss_dssp CCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHHHh
Confidence 56899999999999999999999887642 22355666667776654 9999999998765432 345678
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCc
Q 029437 87 KVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVR 166 (193)
Q Consensus 87 ~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (193)
.+|++++|+|+...+. ...++..+... ++|+++|+||+|+...... +..+.+....
T Consensus 113 ~aD~vllVvD~~~~~~---~~~~l~~l~~~----~~piIvV~NK~Dl~~~~~~-~~~~~l~~~~---------------- 168 (423)
T 3qq5_A 113 RADCGILVTDSAPTPY---EDDVVNLFKEM----EIPFVVVVNKIDVLGEKAE-ELKGLYESRY---------------- 168 (423)
T ss_dssp SCSEEEEECSSSCCHH---HHHHHHHHHHT----TCCEEEECCCCTTTTCCCT-HHHHHSSCCT----------------
T ss_pred cCCEEEEEEeCCChHH---HHHHHHHHHhc----CCCEEEEEeCcCCCCccHH-HHHHHHHHHc----------------
Confidence 8999999999943332 33444444332 8999999999999855443 3333333222
Q ss_pred ceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 167 PLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 167 ~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
.++++++||++|.|++++|++|.+.+
T Consensus 169 g~~v~~vSAktg~gI~eL~~~L~~~l 194 (423)
T 3qq5_A 169 EAKVLLVSALQKKGFDDIGKTISEIL 194 (423)
T ss_dssp TCCCCCCSSCCTTSTTTHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 24689999999999999999998876
No 140
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.89 E-value=4e-23 Score=162.98 Aligned_cols=149 Identities=17% Similarity=0.223 Sum_probs=100.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc--cCC--CCCcceeEEEeCCEEEEEEEcCChhhhHhhH--------Hhhc
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQ--HQP--TQYPTSEELSIGKIKFKAFDLGGHQIARRVW--------KDYY 85 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~--~~~--t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~--------~~~~ 85 (193)
...++|+++|++|+|||||+|++.+.++.. ..+ |.+.....+..++..+.+|||||........ ...+
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~ 301 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAA 301 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------CCC
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhh
Confidence 356899999999999999999999876432 222 3344556778889999999999986654322 2356
Q ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCC
Q 029437 86 AKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNV 165 (193)
Q Consensus 86 ~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (193)
..+|++++|+|++++.+... ..++..+ .+.|+++|+||+|+.+..... .. . ...
T Consensus 302 ~~aD~vl~VvD~s~~~~~~~-~~i~~~l------~~~piivV~NK~Dl~~~~~~~----~~--~-------------~~~ 355 (462)
T 3geh_A 302 NTADLVLLTIDAATGWTTGD-QEIYEQV------KHRPLILVMNKIDLVEKQLIT----SL--E-------------YPE 355 (462)
T ss_dssp CSCSEEEEEEETTTCSCHHH-HHHHHHH------TTSCEEEEEECTTSSCGGGST----TC--C-------------CCT
T ss_pred hcCCEEEEEeccCCCCCHHH-HHHHHhc------cCCcEEEEEECCCCCcchhhH----HH--H-------------Hhc
Confidence 78999999999998755433 3444443 246999999999997432211 00 0 001
Q ss_pred cceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 166 RPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 166 ~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
...+++++||++|.|+++++++|.+.+
T Consensus 356 ~~~~~i~iSAktg~Gi~eL~~~i~~~~ 382 (462)
T 3geh_A 356 NITQIVHTAAAQKQGIDSLETAILEIV 382 (462)
T ss_dssp TCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 235689999999999999999998764
No 141
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.88 E-value=7e-22 Score=151.77 Aligned_cols=154 Identities=19% Similarity=0.126 Sum_probs=105.6
Q ss_pred CccE-EEEEcCCCCCHHHHHHHHhcCCccc---cCCCCCcceeEEEeCCEEEEEEEcCCh---------hhhHhhHHhhc
Q 029437 19 KEAK-ILFLGLDNAGKTTLLHMLKDERLVQ---HQPTQYPTSEELSIGKIKFKAFDLGGH---------QIARRVWKDYY 85 (193)
Q Consensus 19 ~~~~-i~v~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~G~---------~~~~~~~~~~~ 85 (193)
..++ |+++|++|||||||++++.+..+.. ..+|.++....+.+++..+.+|||+|. +.+..... .+
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~-~~ 255 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLS-EA 255 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHH-GG
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHH-HH
Confidence 3455 9999999999999999999887532 345777788888888899999999996 22333333 46
Q ss_pred ccCCEEEEEEECCChh--hHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHH-------HhhCCCccccCCC
Q 029437 86 AKVDAVVYLVDAYDKE--RFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELR-------YHLGLSNFTTGKG 156 (193)
Q Consensus 86 ~~~d~vl~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~-------~~~~~~~~~~~~~ 156 (193)
..+|++++|+|++++. ...... .+..++......+.|+++|+||+|+.... ..+.. ..+. .
T Consensus 256 ~~aD~il~VvD~s~~~~~~~~~~~-~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~-~~~~~~~~~~l~~~l~--~------ 325 (364)
T 2qtf_A 256 KYSDALILVIDSTFSENLLIETLQ-SSFEILREIGVSGKPILVTLNKIDKINGD-LYKKLDLVEKLSKELY--S------ 325 (364)
T ss_dssp GGSSEEEEEEETTSCHHHHHHHHH-HHHHHHHHHTCCSCCEEEEEECGGGCCSC-HHHHHHHHHHHHHHHC--S------
T ss_pred HhCCEEEEEEECCCCcchHHHHHH-HHHHHHHHhCcCCCCEEEEEECCCCCCch-HHHHHHHHHHHHHHhc--C------
Confidence 8899999999998875 333332 23333333334578999999999997543 22211 1110 0
Q ss_pred ccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 157 KVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 157 ~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
...+++++||++|.|+++++++|.+.+
T Consensus 326 ---------~~~~~~~~SA~~g~gi~~L~~~I~~~l 352 (364)
T 2qtf_A 326 ---------PIFDVIPISALKRTNLELLRDKIYQLA 352 (364)
T ss_dssp ---------CEEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ---------CCCcEEEEECCCCcCHHHHHHHHHHHh
Confidence 124679999999999999999998754
No 142
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.88 E-value=4.3e-23 Score=145.46 Aligned_cols=129 Identities=23% Similarity=0.340 Sum_probs=94.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhccc----CCEEEE
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAK----VDAVVY 93 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~----~d~vl~ 93 (193)
...++|+++|++|||||||++++.+..+....++..+... ..+....+.+|||||+..+...+..++.. +|++++
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~ 124 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA-ADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIF 124 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC-------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCcee-eeecCCeEEEEECCCCchHHHHHHHHHHhhcccCCEEEE
Confidence 5678999999999999999999998876542222222111 12256788999999998876666555554 899999
Q ss_pred EEECC-ChhhHHHHHHHHHHHHcCC---CCCCCcEEEEEeCCCCCCCCCHHHHHHhhC
Q 029437 94 LVDAY-DKERFAESKKELDALLSDE---ALANVPFLVLGNKIDIPYAASEEELRYHLG 147 (193)
Q Consensus 94 v~d~~-~~~~~~~~~~~~~~~~~~~---~~~~~pviiv~nK~D~~~~~~~~~~~~~~~ 147 (193)
|+|++ +++++.....++..++... ...+.|+++|+||+|+......+++.+.+.
T Consensus 125 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~ 182 (193)
T 2ged_A 125 MVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALE 182 (193)
T ss_dssp EEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHH
T ss_pred EEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHHH
Confidence 99999 8889988888888876432 225899999999999987777776665553
No 143
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.88 E-value=6.3e-23 Score=162.41 Aligned_cols=152 Identities=18% Similarity=0.239 Sum_probs=103.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccccCC----CCCcceeEEEeCCEEEEEEEcCC--------hhhhHhhHHhh
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQP----TQYPTSEELSIGKIKFKAFDLGG--------HQIARRVWKDY 84 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~G--------~~~~~~~~~~~ 84 (193)
.+...+|+|+|.+|||||||+|++.+..+....+ |.+.....+.+.+..+.+||||| +..+......+
T Consensus 20 ~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 99 (456)
T 4dcu_A 20 HMGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIA 99 (456)
T ss_dssp ---CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhh
Confidence 4566899999999999999999999887654333 33444555666778999999999 77778888888
Q ss_pred cccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCC
Q 029437 85 YAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSN 164 (193)
Q Consensus 85 ~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (193)
+..+|++|+|+|+.+.. .....++..++.. .++|+++++||+|+.... .+..+.+..
T Consensus 100 ~~~ad~il~VvD~~~~~--~~~d~~l~~~l~~---~~~pvilV~NK~D~~~~~--~~~~e~~~l---------------- 156 (456)
T 4dcu_A 100 MDEADVIIFMVNGREGV--TAADEEVAKILYR---TKKPVVLAVNKLDNTEMR--ANIYDFYSL---------------- 156 (456)
T ss_dssp HHHCSEEEEEEESSSCS--CHHHHHHHHHHTT---CCSCEEEEEECC-----------CCSGGG----------------
T ss_pred HhhCCEEEEEEeCCCCC--ChHHHHHHHHHHH---cCCCEEEEEECccchhhh--hhHHHHHHc----------------
Confidence 89999999999987642 3344555555543 589999999999986321 111111111
Q ss_pred CcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 165 VRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 165 ~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
.....+++||++|.|++++++++.+.+
T Consensus 157 -g~~~~~~iSA~~g~gv~~L~~~i~~~l 183 (456)
T 4dcu_A 157 -GFGEPYPISGTHGLGLGDLLDAVAEHF 183 (456)
T ss_dssp -SSSSEEECCTTTCTTHHHHHHHHHTTG
T ss_pred -CCCceEEeecccccchHHHHHHHHhhc
Confidence 111346999999999999999997654
No 144
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.88 E-value=2.4e-22 Score=151.04 Aligned_cols=152 Identities=16% Similarity=0.140 Sum_probs=103.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccccC----CCCCcceeEEEeCCEEEEEEEcCChh-hhH--------hhHHhhcc
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKDERLVQHQ----PTQYPTSEELSIGKIKFKAFDLGGHQ-IAR--------RVWKDYYA 86 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~D~~G~~-~~~--------~~~~~~~~ 86 (193)
..+|+|+|++|||||||++++.+..+.... .|.......+..++..+.+|||||.. ... ......+.
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~ 87 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIG 87 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHHHh
Confidence 457999999999999999999998765322 23333445566778899999999986 322 12234567
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC-CCHHHHHHhhCCCccccCCCccccCCCCC
Q 029437 87 KVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA-ASEEELRYHLGLSNFTTGKGKVNLADSNV 165 (193)
Q Consensus 87 ~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (193)
.+|++++|+|+++. .....++...+.. .+.|+++++||+|+... ....+....+....
T Consensus 88 ~~D~vl~Vvd~~~~---~~~~~~i~~~l~~---~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~--------------- 146 (301)
T 1ega_A 88 DVELVIFVVEGTRW---TPDDEMVLNKLRE---GKAPVILAVNKVDNVQEKADLLPHLQFLASQM--------------- 146 (301)
T ss_dssp CEEEEEEEEETTCC---CHHHHHHHHHHHS---SSSCEEEEEESTTTCCCHHHHHHHHHHHHTTS---------------
T ss_pred cCCEEEEEEeCCCC---CHHHHHHHHHHHh---cCCCEEEEEECcccCccHHHHHHHHHHHHHhc---------------
Confidence 89999999999762 2222333333332 47899999999999741 11112222221111
Q ss_pred cceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 166 RPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 166 ~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
....++++||++|.|+++++++|.+.+
T Consensus 147 ~~~~~i~iSA~~g~~v~~l~~~i~~~l 173 (301)
T 1ega_A 147 NFLDIVPISAETGLNVDTIAAIVRKHL 173 (301)
T ss_dssp CCSEEEECCTTTTTTHHHHHHHHHTTC
T ss_pred CcCceEEEECCCCCCHHHHHHHHHHhC
Confidence 123689999999999999999998754
No 145
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.88 E-value=2.5e-21 Score=151.30 Aligned_cols=159 Identities=17% Similarity=0.123 Sum_probs=100.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcc---c---cCCCCCcceeEEEe---------------C--------CEEEE
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLV---Q---HQPTQYPTSEELSI---------------G--------KIKFK 67 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~---~---~~~t~~~~~~~~~~---------------~--------~~~~~ 67 (193)
.+..++|+++|++++|||||+++|.+.... . ...|.+........ . ...+.
T Consensus 5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 84 (408)
T 1s0u_A 5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS 84 (408)
T ss_dssp CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence 356789999999999999999999854321 1 11244433222111 1 26899
Q ss_pred EEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC----HHHHH
Q 029437 68 AFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAAS----EEELR 143 (193)
Q Consensus 68 ~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~----~~~~~ 143 (193)
+|||||++.+...+...+..+|++++|+|++++....+..+.+..+ ... ...|+++++||+|+..... .+++.
T Consensus 85 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~-~~l--~~~~iivv~NK~Dl~~~~~~~~~~~~i~ 161 (408)
T 1s0u_A 85 FVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMAL-EIL--GIDKIIIVQNKIDLVDEKQAEENYEQIK 161 (408)
T ss_dssp EEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHH-HHT--TCCCEEEEEECTTSSCTTTTTTHHHHHH
T ss_pred EEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHH-HHc--CCCeEEEEEEccCCCCHHHHHHHHHHHH
Confidence 9999999999888777888999999999998642111222222222 111 2358999999999975432 23333
Q ss_pred HhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 144 YHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
+.+.... ....+++++||++|.|+++++++|.+.+
T Consensus 162 ~~l~~~~--------------~~~~~~i~vSA~~g~gi~~L~~~l~~~i 196 (408)
T 1s0u_A 162 EFVKGTI--------------AENAPIIPISAHHEANIDVLLKAIQDFI 196 (408)
T ss_dssp HHHTTST--------------TTTCCEEEC------CHHHHHHHHHHHS
T ss_pred HHHhhcC--------------CCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 3332111 1346799999999999999999998754
No 146
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.88 E-value=1.2e-21 Score=156.78 Aligned_cols=125 Identities=18% Similarity=0.148 Sum_probs=94.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc------------------CCcc-------ccCCCCCcceeEEEeCCEEEEEEEcCC
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKD------------------ERLV-------QHQPTQYPTSEELSIGKIKFKAFDLGG 73 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~------------------~~~~-------~~~~t~~~~~~~~~~~~~~~~~~D~~G 73 (193)
+..+|+|+|++|+|||||+++|+. .... ....|.......+.+.+..+++|||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG 91 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG 91 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence 346899999999999999999961 1111 123466677788889999999999999
Q ss_pred hhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC---HHHHHHhhCC
Q 029437 74 HQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAAS---EEELRYHLGL 148 (193)
Q Consensus 74 ~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~---~~~~~~~~~~ 148 (193)
+..+.......++.+|++|+|+|+++..+.+.. ..|..... .++|+++++||+|+..... .+++.+.++.
T Consensus 92 ~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~-~~~~~~~~----~~iPiivviNK~Dl~~~~~~~~l~ei~~~l~~ 164 (528)
T 3tr5_A 92 HADFTEDTYRTLTAVDSALMVIDAAKGVEPRTI-KLMEVCRL----RHTPIMTFINKMDRDTRPSIELLDEIESILRI 164 (528)
T ss_dssp STTCCHHHHHGGGGCSEEEEEEETTTCSCHHHH-HHHHHHHT----TTCCEEEEEECTTSCCSCHHHHHHHHHHHHCC
T ss_pred chhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHHHHHHH----cCCCEEEEEeCCCCccccHHHHHHHHHHhhCC
Confidence 999988888899999999999999986554433 34444432 3789999999999975432 2335555543
No 147
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.88 E-value=3.9e-22 Score=147.08 Aligned_cols=158 Identities=11% Similarity=0.029 Sum_probs=103.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCC-ccc-cC---CCCCcceeEEEeCCEEEEEEEcCChhhh-----------Hhh
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDER-LVQ-HQ---PTQYPTSEELSIGKIKFKAFDLGGHQIA-----------RRV 80 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~-~~---~t~~~~~~~~~~~~~~~~~~D~~G~~~~-----------~~~ 80 (193)
....++|+|+|++|||||||++++.+.. +.. .. .|.......+.+.+..+.+|||||+... ...
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~ 98 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRC 98 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHH
Confidence 3467899999999999999999999877 332 11 3445555667788899999999997543 222
Q ss_pred HHhhcccCCEEEEEEECCChhh-HHHHHHHHHHHHcCCCCCCCcEEEEEe-CCCCCCCCCHHH------------HHHhh
Q 029437 81 WKDYYAKVDAVVYLVDAYDKER-FAESKKELDALLSDEALANVPFLVLGN-KIDIPYAASEEE------------LRYHL 146 (193)
Q Consensus 81 ~~~~~~~~d~vl~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~pviiv~n-K~D~~~~~~~~~------------~~~~~ 146 (193)
....++.+|++++|+|+++... ...+..++...... ....|+++++| |+|+... ...+ +...+
T Consensus 99 ~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~--~~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~ 175 (260)
T 2xtp_A 99 YLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGE--DAMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAAC 175 (260)
T ss_dssp HHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCG--GGGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHHT
T ss_pred HHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCc--hhhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHHh
Confidence 2346688999999999986322 22333444444321 11457777777 9999743 3333 22222
Q ss_pred CCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 147 GLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
+..+ .....+++||++|.|++++|++|.+.+
T Consensus 176 ~~~~---------------~~~~~~~~SA~~~~gv~~l~~~i~~~~ 206 (260)
T 2xtp_A 176 GGRI---------------CAFNNRAEGSNQDDQVKELMDCIEDLL 206 (260)
T ss_dssp TTCE---------------EECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCeE---------------EEecCcccccccHHHHHHHHHHHHHHH
Confidence 2111 001117899999999999999998754
No 148
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.88 E-value=6.4e-24 Score=169.56 Aligned_cols=157 Identities=19% Similarity=0.134 Sum_probs=112.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcccc---CCCCCcceeEEEe-CCEEEEEEEcCChhhhHhhHHhhcccCCEEEEE
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQH---QPTQYPTSEELSI-GKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYL 94 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~---~~t~~~~~~~~~~-~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v 94 (193)
+.++|+++|++|+|||||+++|.+..+... ..|.......+.. .+..+.+|||||+..+..++...++.+|++++|
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILV 82 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVILV 82 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSCEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEEEEE
Confidence 457899999999999999999987765432 2244444444544 456899999999999999888889999999999
Q ss_pred EECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC---HHHHHHhhCCCccccCCCccccCCCCCcceEEE
Q 029437 95 VDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAAS---EEELRYHLGLSNFTTGKGKVNLADSNVRPLEVF 171 (193)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (193)
+|+++....+. .+.+..... .++|+++++||+|+..... ..++. ...... ..+....+++
T Consensus 83 VDa~dg~~~qt-~e~l~~~~~----~~vPiIVViNKiDl~~~~~~~v~~~l~-~~~~~~-----------e~~~~~~~iv 145 (537)
T 3izy_P 83 VAADDGVMKQT-VESIQHAKD----AHVPIVLAINKCDKAEADPEKVKKELL-AYDVVC-----------EDYGGDVQAV 145 (537)
T ss_dssp CBSSSCCCHHH-HHHHHHHHT----TTCCEEECCBSGGGTTTSCCSSSSHHH-HTTSCC-----------CCSSSSEEEC
T ss_pred EECCCCccHHH-HHHHHHHHH----cCCcEEEEEecccccccchHHHHHHHH-hhhhhH-----------HhcCCCceEE
Confidence 99988654333 333333322 4789999999999974321 11121 111111 1222457899
Q ss_pred EeeeecCCChhhHHHhhhhhc
Q 029437 172 MCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 172 ~~Sa~~g~gv~el~~~i~~~~ 192 (193)
++||++|.|+++++++|...+
T Consensus 146 ~vSAktG~GI~eLle~I~~l~ 166 (537)
T 3izy_P 146 HVSALTGENMMALAEATIALA 166 (537)
T ss_dssp CCCSSSSCSSHHHHHHHHHHH
T ss_pred EEECCCCCCchhHHHHHHHhh
Confidence 999999999999999997653
No 149
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.87 E-value=2.8e-22 Score=159.72 Aligned_cols=157 Identities=18% Similarity=0.059 Sum_probs=103.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCc--c--------------------------------ccCCCCCcceeEEEeC
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERL--V--------------------------------QHQPTQYPTSEELSIG 62 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~--~--------------------------------~~~~t~~~~~~~~~~~ 62 (193)
.+..++|+++|++|+|||||+++|+.... . ....|.......+...
T Consensus 30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 109 (483)
T 3p26_A 30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 109 (483)
T ss_dssp SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC
Confidence 56779999999999999999999965410 0 0123555566677778
Q ss_pred CEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhHH------HHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC
Q 029437 63 KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFA------ESKKELDALLSDEALANVPFLVLGNKIDIPYA 136 (193)
Q Consensus 63 ~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~------~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~ 136 (193)
+..+.+|||||++.+...+...+..+|++|+|+|++++.... ...+.+. +.... ...|+++++||+|+...
T Consensus 110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~-~~~~~--~~~~iIvviNK~Dl~~~ 186 (483)
T 3p26_A 110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHML-LASSL--GIHNLIIAMNKMDNVDW 186 (483)
T ss_dssp SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHH-HHHHT--TCCCEEEEEECGGGGTT
T ss_pred CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHH-HHHHc--CCCcEEEEEECcCcccc
Confidence 899999999999999999899999999999999998864321 1222222 21111 23579999999999752
Q ss_pred C--CHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhH
Q 029437 137 A--SEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDG 184 (193)
Q Consensus 137 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el 184 (193)
. ..+++.+.+......... ....++++++||++|.|++++
T Consensus 187 ~~~~~~~i~~~~~~~l~~~g~--------~~~~~~~i~iSA~~g~gi~el 228 (483)
T 3p26_A 187 SQQRFEEIKSKLLPYLVDIGF--------FEDNINWVPISGFSGEGVYKI 228 (483)
T ss_dssp CHHHHHHHHHHHHHHHHHHTC--------CGGGEEEEECCSSSCTTSSSS
T ss_pred hHHHHHHHHHHHHHHHHHcCC--------CcccceEEEEeeecCCCcccc
Confidence 1 122222222111000000 003578999999999999864
No 150
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.87 E-value=9.4e-22 Score=159.17 Aligned_cols=150 Identities=20% Similarity=0.194 Sum_probs=103.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC--ccc----------------cCCCCCcceeEEEeC-----CEEEEEEEcCChhh
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKDER--LVQ----------------HQPTQYPTSEELSIG-----KIKFKAFDLGGHQI 76 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~~~--~~~----------------~~~t~~~~~~~~~~~-----~~~~~~~D~~G~~~ 76 (193)
-.+|+|+|++|+|||||+++++... ... ...|.......+.+. .+.+++|||||+..
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d 83 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD 83 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence 4589999999999999999997521 110 112333334445443 37899999999999
Q ss_pred hHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHH----HHHhhCCCccc
Q 029437 77 ARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEE----LRYHLGLSNFT 152 (193)
Q Consensus 77 ~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~----~~~~~~~~~~~ 152 (193)
+.......+..+|++++|+|+++..+.+....|.... . .++|+++++||+|+..+. .++ +.+.++...
T Consensus 84 F~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~-~----~~ipiIvViNKiDl~~a~-~~~v~~ei~~~lg~~~-- 155 (599)
T 3cb4_D 84 FSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAM-E----MDLEVVPVLNKIDLPAAD-PERVAEEIEDIVGIDA-- 155 (599)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHH-H----TTCEEEEEEECTTSTTCC-HHHHHHHHHHHTCCCC--
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H----CCCCEEEeeeccCccccc-HHHHHHHHHHHhCCCc--
Confidence 9988888899999999999998876555554444433 2 378999999999997543 333 333333221
Q ss_pred cCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 153 TGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
.+++++||++|.|+++++++|.+.+
T Consensus 156 ---------------~~vi~vSAktg~GI~~Ll~~I~~~l 180 (599)
T 3cb4_D 156 ---------------TDAVRCSAKTGVGVQDVLERLVRDI 180 (599)
T ss_dssp ---------------TTCEEECTTTCTTHHHHHHHHHHHS
T ss_pred ---------------ceEEEeecccCCCchhHHHHHhhcC
Confidence 2378999999999999999998765
No 151
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.87 E-value=2e-21 Score=157.06 Aligned_cols=155 Identities=17% Similarity=0.178 Sum_probs=107.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC--ccc----------------cCCCCCcceeEEEeC-----CEEEEEEEcCChh
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDER--LVQ----------------HQPTQYPTSEELSIG-----KIKFKAFDLGGHQ 75 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~--~~~----------------~~~t~~~~~~~~~~~-----~~~~~~~D~~G~~ 75 (193)
.-.+|+++|++++|||||+++++... ... ...|.......+.+. .+.+++|||||+.
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~ 84 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV 84 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence 34689999999999999999997521 110 112333333444443 3789999999999
Q ss_pred hhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCC
Q 029437 76 IARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGK 155 (193)
Q Consensus 76 ~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 155 (193)
.+.......+..+|++++|+|+++..+.+....|.... . .++|+++++||+|+..+. .++..+++.... ..
T Consensus 85 dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~-~----~~ipiIvviNKiDl~~a~-~~~v~~el~~~l---g~ 155 (600)
T 2ywe_A 85 DFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAV-E----QDLVIIPVINKIDLPSAD-VDRVKKQIEEVL---GL 155 (600)
T ss_dssp GGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHH-H----TTCEEEEEEECTTSTTCC-HHHHHHHHHHTS---CC
T ss_pred hHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHH-H----CCCCEEEEEeccCccccC-HHHHHHHHHHhh---CC
Confidence 99888888889999999999999876665555544433 2 488999999999997543 443333322111 00
Q ss_pred CccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 156 GKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
...+++++||++|.|+++++++|.+.+
T Consensus 156 ----------~~~~vi~vSAktg~GI~~Lle~I~~~l 182 (600)
T 2ywe_A 156 ----------DPEEAILASAKEGIGIEEILEAIVNRI 182 (600)
T ss_dssp ----------CGGGCEECBTTTTBSHHHHHHHHHHHS
T ss_pred ----------CcccEEEEEeecCCCchHHHHHHHHhc
Confidence 112479999999999999999998765
No 152
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.87 E-value=9.8e-22 Score=154.93 Aligned_cols=156 Identities=19% Similarity=0.188 Sum_probs=103.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc--c--CCCCCcceeEEEeCCEEEEEEEcCChhhhHhhH------------H
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQ--H--QPTQYPTSEELSIGKIKFKAFDLGGHQIARRVW------------K 82 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~--~--~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~------------~ 82 (193)
..++|+++|++|||||||++++.+..... . ..|.+.....+.+.+..+.+|||+|..+..... .
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~ 258 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVV 258 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHH
Confidence 45899999999999999999999887532 2 224556667788888899999999975432211 2
Q ss_pred hhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCC--CHHHHHHhhCCCccccCCCcccc
Q 029437 83 DYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAA--SEEELRYHLGLSNFTTGKGKVNL 160 (193)
Q Consensus 83 ~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 160 (193)
..+..+|++++|+|+.+..+.+. ..+...+.. .+.|+++++||+|+.... ..+++.+.+...+
T Consensus 259 ~~i~~ad~vllv~d~~~~~~~~~--~~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~---------- 323 (439)
T 1mky_A 259 DSIEKADVVVIVLDATQGITRQD--QRMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKL---------- 323 (439)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHH--HHHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHC----------
T ss_pred HHHhhCCEEEEEEeCCCCCCHHH--HHHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHh----------
Confidence 34578999999999987654433 222233222 478999999999997432 2333332221111
Q ss_pred CCCCCcceEEEEeeeecCCChhhHHHhhhhh
Q 029437 161 ADSNVRPLEVFMCSIVRKMGYGDGFKWLSQY 191 (193)
Q Consensus 161 ~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~ 191 (193)
......+++++||++|.|++++|+.|.+.
T Consensus 324 --~~~~~~~~~~~SA~~g~gv~~l~~~i~~~ 352 (439)
T 1mky_A 324 --YFIDYSPLIFTSADKGWNIDRMIDAMNLA 352 (439)
T ss_dssp --GGGTTSCEEECBTTTTBSHHHHHHHHHHH
T ss_pred --ccCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 00023568999999999999999998764
No 153
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.87 E-value=2.3e-21 Score=151.55 Aligned_cols=155 Identities=15% Similarity=0.138 Sum_probs=106.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCc---cc---cCCCCCcceeEEEe---------------C--------CEEEE
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERL---VQ---HQPTQYPTSEELSI---------------G--------KIKFK 67 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~---~~---~~~t~~~~~~~~~~---------------~--------~~~~~ 67 (193)
.+..++|+++|++++|||||+++|.+... .. ...|.+.......+ . ...+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 86 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 86 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence 46678999999999999999999985432 11 11244443322222 0 26899
Q ss_pred EEEcCChhhhHhhHHhhcccCCEEEEEEECCCh----hhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCH----
Q 029437 68 AFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDK----ERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASE---- 139 (193)
Q Consensus 68 ~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~----~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~---- 139 (193)
+|||||+..+...+...+..+|++++|+|+++. ++.+.+. .+... ...|+++++||+|+......
T Consensus 87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~-~~~~~------~~~~iivviNK~Dl~~~~~~~~~~ 159 (410)
T 1kk1_A 87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLM-ALQII------GQKNIIIAQNKIELVDKEKALENY 159 (410)
T ss_dssp EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHH-HHHHH------TCCCEEEEEECGGGSCHHHHHHHH
T ss_pred EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHH-HHHHc------CCCcEEEEEECccCCCHHHHHHHH
Confidence 999999999988877788899999999999864 3333322 22211 23589999999999753211
Q ss_pred HHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 140 EELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
+++.+.+... .....+++++||++|.|+++++++|.+.+
T Consensus 160 ~~i~~~l~~~--------------~~~~~~~i~vSA~~g~gi~~L~~~l~~~~ 198 (410)
T 1kk1_A 160 RQIKEFIEGT--------------VAENAPIIPISALHGANIDVLVKAIEDFI 198 (410)
T ss_dssp HHHHHHHTTS--------------TTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred HHHHHHHHhc--------------CcCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 1222222211 11346799999999999999999998754
No 154
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.87 E-value=6e-23 Score=162.77 Aligned_cols=156 Identities=20% Similarity=0.187 Sum_probs=109.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcccc---CCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEE
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQH---QPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLV 95 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~---~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~ 95 (193)
+..+|+++|++++|||||++++.+..+... ..|.......+.+++..+++|||||+..+..++...+..+|++++|+
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVV 82 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLVV 82 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEEe
Confidence 457899999999999999999987554421 12444444455566778999999999999888888889999999999
Q ss_pred ECCCh---hhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEE
Q 029437 96 DAYDK---ERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFM 172 (193)
Q Consensus 96 d~~~~---~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (193)
|+++. ++.+. +.... ..++|+++++||+|+.... .+++...+... ..+++.+....++++
T Consensus 83 da~~g~~~qT~e~----l~~~~----~~~vPiIVviNKiDl~~~~-~~~v~~~l~~~--------~~~~~~~~~~~~~v~ 145 (501)
T 1zo1_I 83 AADDGVMPQTIEA----IQHAK----AAQVPVVVAVNKIDKPEAD-PDRVKNELSQY--------GILPEEWGGESQFVH 145 (501)
T ss_dssp ETTTBSCTTTHHH----HHHHH----HTTCCEEEEEECSSSSTTC-CCCTTCCCCCC--------CCCTTCCSSSCEEEE
T ss_pred ecccCccHHHHHH----HHHHH----hcCceEEEEEEeccccccC-HHHHHHHHHHh--------hhhHHHhCCCccEEE
Confidence 99873 33322 22221 1478999999999997432 11111111100 011122223478999
Q ss_pred eeeecCCChhhHHHhhhhh
Q 029437 173 CSIVRKMGYGDGFKWLSQY 191 (193)
Q Consensus 173 ~Sa~~g~gv~el~~~i~~~ 191 (193)
+||++|.|+++++++|...
T Consensus 146 vSAktG~gI~eLle~I~~~ 164 (501)
T 1zo1_I 146 VSAKAGTGIDELLDAILLQ 164 (501)
T ss_dssp CCTTTCTTCTTHHHHTTTT
T ss_pred EeeeeccCcchhhhhhhhh
Confidence 9999999999999999753
No 155
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.87 E-value=1.8e-21 Score=146.15 Aligned_cols=169 Identities=14% Similarity=0.108 Sum_probs=105.3
Q ss_pred HHHHHHHHhhCC--CCCccEEEEEcCCCCCHHHHHHHHhcCCcccc-------CCC----------------------CC
Q 029437 5 DWFYGVLASLGL--WQKEAKILFLGLDNAGKTTLLHMLKDERLVQH-------QPT----------------------QY 53 (193)
Q Consensus 5 ~~~~~~~~~~~~--~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-------~~t----------------------~~ 53 (193)
+-+.+.+...+. ....++|+|+|.+|||||||++++++..+.+. .|+ ..
T Consensus 9 ~~l~~~l~~~~~~~~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt 88 (299)
T 2aka_B 9 NRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTD 88 (299)
T ss_dssp HHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCC
T ss_pred HHHHHHHHhcCCCCCCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCC
Confidence 334444444432 24668999999999999999999999886421 121 00
Q ss_pred cc-------------------------eeEEEeC-CEEEEEEEcCChh-------------hhHhhHHhhcccCCEEE-E
Q 029437 54 PT-------------------------SEELSIG-KIKFKAFDLGGHQ-------------IARRVWKDYYAKVDAVV-Y 93 (193)
Q Consensus 54 ~~-------------------------~~~~~~~-~~~~~~~D~~G~~-------------~~~~~~~~~~~~~d~vl-~ 93 (193)
.. ...+... ...+.+|||||.. .+..+...++..++.++ +
T Consensus 89 ~~~~~~~~~~~~~~i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 168 (299)
T 2aka_B 89 FEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILA 168 (299)
T ss_dssp HHHHHHHHHHHHHHHCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEE
T ss_pred HHHHHHHHHHHHHHhcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEE
Confidence 00 0001111 3689999999953 34566677778888666 7
Q ss_pred EEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC-HHHHHHhhCCCccccCCCccccCCCCCcceEEEE
Q 029437 94 LVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAAS-EEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFM 172 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (193)
|+|+++..+......++..+ . ..+.|+++|+||+|+..... ..+. +.... .........+++
T Consensus 169 v~d~~~~~~~~~~~~~~~~~-~---~~~~~~i~V~NK~Dl~~~~~~~~~~---~~~~~----------~~~~~~~~~v~~ 231 (299)
T 2aka_B 169 VSPANSDLANSDALKIAKEV-D---PQGQRTIGVITKLDLMDEGTDARDV---LENKL----------LPLRRGYIGVVN 231 (299)
T ss_dssp EEESSSCGGGCHHHHHHHHH-C---TTCSSEEEEEECGGGSCTTCCCHHH---HTTCS----------SCCTTCEEECCC
T ss_pred EecCCcchhhhHHHHHHHHh-C---CCCCeEEEEEEccccCCCCchHHHH---HhCCc----------CcCCCCcEEEEC
Confidence 99998754333333333333 2 24789999999999974322 1111 11110 000012357899
Q ss_pred eeeecCCChhhHHHhhhh
Q 029437 173 CSIVRKMGYGDGFKWLSQ 190 (193)
Q Consensus 173 ~Sa~~g~gv~el~~~i~~ 190 (193)
+||++|.|+++++++|.+
T Consensus 232 ~SA~~~~gi~~l~~~l~~ 249 (299)
T 2aka_B 232 RSQKDIDGKKDITAALAA 249 (299)
T ss_dssp CCCBCTTSCBCHHHHHHH
T ss_pred CChhhccccccHHHHHHH
Confidence 999999999999999864
No 156
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.86 E-value=4.6e-21 Score=150.85 Aligned_cols=159 Identities=19% Similarity=0.171 Sum_probs=104.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcc----------------------------------ccCCCCCcceeEEEeC
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLV----------------------------------QHQPTQYPTSEELSIG 62 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~----------------------------------~~~~t~~~~~~~~~~~ 62 (193)
.+..++|+++|++|+|||||+++|+...-. ....|.+.....+..+
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~ 93 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE 93 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence 456799999999999999999999543100 0123444455567777
Q ss_pred CEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhh---H---HHHHHHHHHHHcCCCCCCCc-EEEEEeCCCCCC
Q 029437 63 KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKER---F---AESKKELDALLSDEALANVP-FLVLGNKIDIPY 135 (193)
Q Consensus 63 ~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~---~---~~~~~~~~~~~~~~~~~~~p-viiv~nK~D~~~ 135 (193)
+..+.+|||||++++...+...+..+|++++|+|+++... + .+..+.+..... .++| +++++||+|+..
T Consensus 94 ~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~----~~v~~iIvviNK~Dl~~ 169 (439)
T 3j2k_7 94 KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT----AGVKHLIVLINKMDDPT 169 (439)
T ss_pred CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH----cCCCeEEEEeecCCCcc
Confidence 8899999999999999888888999999999999987531 1 122222222211 3566 999999999963
Q ss_pred CCC----HHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHH
Q 029437 136 AAS----EEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFK 186 (193)
Q Consensus 136 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~ 186 (193)
... .+++.+++.......... ....++++++||++|.|++++.+
T Consensus 170 ~~~~~~~~~~i~~~~~~~l~~~g~~-------~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 170 VNWSNERYEECKEKLVPFLKKVGFN-------PKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccc-------ccCCeeEEEeeccCCcccccccc
Confidence 221 122222221110000000 00146899999999999998544
No 157
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.86 E-value=3.8e-21 Score=145.50 Aligned_cols=143 Identities=15% Similarity=0.206 Sum_probs=102.1
Q ss_pred CCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECC----------ChhhHHHHHHHHHHHHcCCCC
Q 029437 50 PTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAY----------DKERFAESKKELDALLSDEAL 119 (193)
Q Consensus 50 ~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~----------~~~~~~~~~~~~~~~~~~~~~ 119 (193)
+|.+.....+.++++.+++||++|+++++..+..++++++++|+|+|++ +.+++.+...++..+.+....
T Consensus 147 ~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~ 226 (340)
T 4fid_A 147 KTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFL 226 (340)
T ss_dssp CCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGG
T ss_pred ceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhcc
Confidence 3456666677788899999999999999999999999999999999998 678899999999999887777
Q ss_pred CCCcEEEEEeCCCCCCC-----------------CCHHHHHHhhCCCc------cccCCCcc----ccCCCCCcceEEEE
Q 029437 120 ANVPFLVLGNKIDIPYA-----------------ASEEELRYHLGLSN------FTTGKGKV----NLADSNVRPLEVFM 172 (193)
Q Consensus 120 ~~~pviiv~nK~D~~~~-----------------~~~~~~~~~~~~~~------~~~~~~~~----~~~~~~~~~~~~~~ 172 (193)
.++|+++++||+|+... ...++..+.+...+ ........ +......+.+-+++
T Consensus 227 ~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~ 306 (340)
T 4fid_A 227 KGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNP 306 (340)
T ss_dssp TTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEE
T ss_pred CCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEE
Confidence 89999999999998520 11222111111111 00000000 00000013577899
Q ss_pred eeeecCCChhhHHHhhhhhc
Q 029437 173 CSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 173 ~Sa~~g~gv~el~~~i~~~~ 192 (193)
|||++..||+++|+.+.+.+
T Consensus 307 TsA~dt~nv~~vF~~v~~~I 326 (340)
T 4fid_A 307 TNATDGSNIKRVFMLAVDVI 326 (340)
T ss_dssp ECTTCHHHHHHHHHHHHHHH
T ss_pred EEeeCcHHHHHHHHHHHHHH
Confidence 99999999999999887654
No 158
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.86 E-value=5.8e-22 Score=161.26 Aligned_cols=161 Identities=19% Similarity=0.082 Sum_probs=107.3
Q ss_pred hhCCCCCccEEEEEcCCCCCHHHHHHHHhcCCccc----------------------------------cCCCCCcceeE
Q 029437 13 SLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQ----------------------------------HQPTQYPTSEE 58 (193)
Q Consensus 13 ~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~----------------------------------~~~t~~~~~~~ 58 (193)
++...+..++|+++|++|+|||||+++|++..... ...|.......
T Consensus 160 ~l~~~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~ 239 (611)
T 3izq_1 160 FVKSALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSH 239 (611)
T ss_dssp -CCCCCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCE
T ss_pred HHhccCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEE
Confidence 33445678999999999999999999998653210 23366666777
Q ss_pred EEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChh---hH---HHHHHHHHHHHcCCCCCCCcEEEEEeCCC
Q 029437 59 LSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKE---RF---AESKKELDALLSDEALANVPFLVLGNKID 132 (193)
Q Consensus 59 ~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~---~~---~~~~~~~~~~~~~~~~~~~pviiv~nK~D 132 (193)
+...+..+.+|||||+..+...+...+..+|++|+|+|+++.. ++ .+..+.+... .. ....|+|+++||+|
T Consensus 240 ~~~~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~-~~--lgi~~iIVVvNKiD 316 (611)
T 3izq_1 240 FSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLA-SS--LGIHNLIIAMNKMD 316 (611)
T ss_dssp EECSSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHH-HT--TTCCEEEEEEECTT
T ss_pred EecCCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHH-HH--cCCCeEEEEEeccc
Confidence 8888899999999999999988888899999999999998742 00 1222222222 22 12345999999999
Q ss_pred CCCCC--CHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhH
Q 029437 133 IPYAA--SEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDG 184 (193)
Q Consensus 133 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el 184 (193)
+.... ..+++.+.+......... ....++++++||++|.|++++
T Consensus 317 l~~~~~~~~~ei~~~l~~~l~~~g~--------~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 317 NVDWSQQRFEEIKSKLLPYLVDIGF--------FEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp TTTTCHHHHHHHHHHHHHHHHHHTC--------CGGGCEEEECCTTTCTTTSSC
T ss_pred ccchhHHHHHHHHHHHHHHHHhhcc--------cccCccEEeeecccCCCcccc
Confidence 97521 112222222111000000 002468999999999999876
No 159
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.86 E-value=2.2e-21 Score=151.47 Aligned_cols=163 Identities=17% Similarity=0.128 Sum_probs=109.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcC--------Ccc------------ccCCCCCcceeEEEeCCEEEEEEEcCChhh
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDE--------RLV------------QHQPTQYPTSEELSIGKIKFKAFDLGGHQI 76 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~--------~~~------------~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~ 76 (193)
.+..++|+++|++|+|||||+++|.+. .+. ....|.......+...+..+.+|||||+..
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~ 87 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD 87 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence 456789999999999999999999863 211 112244444455666778999999999999
Q ss_pred hHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCc-EEEEEeCCCCCCCCC-HHHHHHhhCCCccccC
Q 029437 77 ARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVP-FLVLGNKIDIPYAAS-EEELRYHLGLSNFTTG 154 (193)
Q Consensus 77 ~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~ 154 (193)
+...+...+..+|++++|+|+++... .+..+++..... .++| +++++||+|+..... .+++.++.........
T Consensus 88 f~~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~----~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 162 (405)
T 2c78_A 88 YIKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ----VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYE 162 (405)
T ss_dssp GHHHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHH----TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhc
Confidence 98888888899999999999988643 334445544432 3678 899999999974211 1111111110000000
Q ss_pred CCccccCCCCCcceEEEEeeeecCCC------------------hhhHHHhhhhhc
Q 029437 155 KGKVNLADSNVRPLEVFMCSIVRKMG------------------YGDGFKWLSQYI 192 (193)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~Sa~~g~g------------------v~el~~~i~~~~ 192 (193)
. .....+++++||++|.| +++++++|.+.+
T Consensus 163 ~--------~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 210 (405)
T 2c78_A 163 F--------PGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYI 210 (405)
T ss_dssp S--------CTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHS
T ss_pred c--------cccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhc
Confidence 0 00235789999999987 788888887654
No 160
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.86 E-value=6e-22 Score=152.53 Aligned_cols=149 Identities=11% Similarity=0.029 Sum_probs=107.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChh
Q 029437 22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKE 101 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~ 101 (193)
+|+++|++++|||||+++|. ....|.+.....+.+++..+.+|||||++++.......+..+|++++|+| ++.
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~-----~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~g- 95 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG-----KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQG- 95 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS-----EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TTC-
T ss_pred EEEEECCCCCCHHHHHHHHH-----hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CCC-
Confidence 99999999999999999998 33456666677777788899999999999998777778899999999999 543
Q ss_pred hHHHHHHHHHHHHcCCCCCCCcE-EEEEe-CCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEE--eeeec
Q 029437 102 RFAESKKELDALLSDEALANVPF-LVLGN-KIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFM--CSIVR 177 (193)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~pv-iiv~n-K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~ 177 (193)
...+..+++..... .++|. ++++| |+|+ .....++..+++.... .......+++++ +||++
T Consensus 96 ~~~qt~e~~~~~~~----~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l----------~~~~~~~~~ii~~~~SA~~ 160 (370)
T 2elf_A 96 LDAHTGECIIALDL----LGFKHGIIALTRSDST-HMHAIDELKAKLKVIT----------SGTVLQDWECISLNTNKSA 160 (370)
T ss_dssp CCHHHHHHHHHHHH----TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHT----------TTSTTTTCEEEECCCCTTS
T ss_pred CcHHHHHHHHHHHH----cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHH----------HhcCCCceEEEeccccccc
Confidence 23444455444322 36777 89999 9999 4322222222221111 000013468999 99999
Q ss_pred ---CCChhhHHHhhhhhc
Q 029437 178 ---KMGYGDGFKWLSQYI 192 (193)
Q Consensus 178 ---g~gv~el~~~i~~~~ 192 (193)
|.|+++++++|.+.+
T Consensus 161 ~~~g~gi~~L~~~l~~~~ 178 (370)
T 2elf_A 161 KNPFEGVDELKARINEVA 178 (370)
T ss_dssp SSTTTTHHHHHHHHHHHH
T ss_pred CcCCCCHHHHHHHHHhhc
Confidence 999999999998654
No 161
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.86 E-value=1.8e-21 Score=153.11 Aligned_cols=155 Identities=16% Similarity=0.126 Sum_probs=100.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC--Ccc--------------------------------ccCCCCCcceeEEEeCC
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDE--RLV--------------------------------QHQPTQYPTSEELSIGK 63 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~--~~~--------------------------------~~~~t~~~~~~~~~~~~ 63 (193)
+..++|+++|++|+|||||+++|+.. .+. ....|.+.....+...+
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 45689999999999999999999754 111 12245555566677788
Q ss_pred EEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHH-------HHHHHHHcCCCCCC-CcEEEEEeCCCCCC
Q 029437 64 IKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESK-------KELDALLSDEALAN-VPFLVLGNKIDIPY 135 (193)
Q Consensus 64 ~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~-------~~~~~~~~~~~~~~-~pviiv~nK~D~~~ 135 (193)
..+.+|||||+..+...+...+..+|++++|+|+++ .+++... +.+..... .+ .|+++++||+|+..
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~----~~~~~iivviNK~Dl~~ 158 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKT----MGLDQLIVAVNKMDLTE 158 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHH----TTCTTCEEEEECGGGSS
T ss_pred eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHH----cCCCeEEEEEEcccCCC
Confidence 999999999999999888889999999999999988 4555332 22222211 24 46899999999975
Q ss_pred CC-CH---HHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHH
Q 029437 136 AA-SE---EELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGF 185 (193)
Q Consensus 136 ~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~ 185 (193)
.. +. +++.++.......... ....++++++||++|.|+.+++
T Consensus 159 ~~~~~~~~~~~~~~i~~~~~~~~~--------~~~~~~~i~iSA~~g~~v~e~~ 204 (435)
T 1jny_A 159 PPYDEKRYKEIVDQVSKFMRSYGF--------NTNKVRFVPVVAPSGDNITHKS 204 (435)
T ss_dssp STTCHHHHHHHHHHHHHHHHHTTC--------CCTTCEEEECBTTTTBTTTBCC
T ss_pred ccccHHHHHHHHHHHHHHHHHcCC--------CcCCceEEEeecccCccccccc
Confidence 31 11 1222222111100000 0023689999999999997543
No 162
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.86 E-value=8.7e-22 Score=150.39 Aligned_cols=130 Identities=20% Similarity=0.296 Sum_probs=89.4
Q ss_pred CCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECC----------ChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCC
Q 029437 62 GKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAY----------DKERFAESKKELDALLSDEALANVPFLVLGNKI 131 (193)
Q Consensus 62 ~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~ 131 (193)
..+.+.+|||+|+++++..+..++++++++|+|+|++ +.+++++...++..+.+.....++|+++++||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 3578999999999999999999999999999999998 788999999999999876556789999999999
Q ss_pred CCCCC----CC-------------------HHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhh
Q 029437 132 DIPYA----AS-------------------EEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWL 188 (193)
Q Consensus 132 D~~~~----~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i 188 (193)
|+... .. .++..+.....+......+. ..+.......+++|||+++.||+++|+++
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~-~~~~~~~~~~~~eTSA~d~~nV~~vF~~v 339 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNT-APDRVDRVFKIYRTTALDQKLVKKTFKLV 339 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTC-CTTTTTSCEEEEECCTTCHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccc-cccccCcceEEEEEEeecchhHHHHHHHH
Confidence 98511 10 01110000000000000000 00000123567899999999999999998
Q ss_pred hhhc
Q 029437 189 SQYI 192 (193)
Q Consensus 189 ~~~~ 192 (193)
.+.+
T Consensus 340 ~~~I 343 (354)
T 2xtz_A 340 DETL 343 (354)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 163
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.86 E-value=3.4e-21 Score=150.03 Aligned_cols=161 Identities=17% Similarity=0.108 Sum_probs=105.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC-------cc------------ccCCCCCcceeEEEeCCEEEEEEEcCChhhhHh
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDER-------LV------------QHQPTQYPTSEELSIGKIKFKAFDLGGHQIARR 79 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~-------~~------------~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~ 79 (193)
.+++|+++|++++|||||+++|.+.. +. ....|.+.....+...+..+.+|||||+..+..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 46899999999999999999998631 11 011233333334555678999999999999988
Q ss_pred hHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCc-EEEEEeCCCCCCCCC-HHHHHHhhCCCccccCCCc
Q 029437 80 VWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVP-FLVLGNKIDIPYAAS-EEELRYHLGLSNFTTGKGK 157 (193)
Q Consensus 80 ~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~ 157 (193)
.+...+..+|++++|+|+++.... +..+.+..... .++| +++++||+|+..... .+.+.++.........
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~-qt~e~l~~~~~----~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~--- 153 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMP-QTREHLLLARQ----IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFG--- 153 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCH-HHHHHHHHHHH----TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTT---
T ss_pred HHHhhHhhCCEEEEEEECCCCCCH-HHHHHHHHHHH----cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcC---
Confidence 888888999999999999885332 22333333222 3778 689999999974211 1111111110000000
Q ss_pred cccCCCCCcceEEEEeeeecCCC----------hhhHHHhhhhhc
Q 029437 158 VNLADSNVRPLEVFMCSIVRKMG----------YGDGFKWLSQYI 192 (193)
Q Consensus 158 ~~~~~~~~~~~~~~~~Sa~~g~g----------v~el~~~i~~~~ 192 (193)
+. ....+++++||++|.| +++++++|.+.+
T Consensus 154 --~~---~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~ 193 (397)
T 1d2e_A 154 --YK---GEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI 193 (397)
T ss_dssp --SC---TTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred --CC---cccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhC
Confidence 00 0235789999999774 889999987754
No 164
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.85 E-value=1.6e-21 Score=157.86 Aligned_cols=163 Identities=20% Similarity=0.187 Sum_probs=105.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccccCC---CCCcceeEEE------------------eCCEEEEEEEcCChhhh
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQP---TQYPTSEELS------------------IGKIKFKAFDLGGHQIA 77 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~---t~~~~~~~~~------------------~~~~~~~~~D~~G~~~~ 77 (193)
+.++|+++|++|+|||||++++.+..+....+ |.......+. +....+++|||||+..+
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 45799999999999999999998765443222 2221111111 11236999999999999
Q ss_pred HhhHHhhcccCCEEEEEEECCC---hhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCH--------------H
Q 029437 78 RRVWKDYYAKVDAVVYLVDAYD---KERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASE--------------E 140 (193)
Q Consensus 78 ~~~~~~~~~~~d~vl~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~--------------~ 140 (193)
..++...++.+|++++|+|+++ +++++.+. .+.. .++|+++++||+|+.+.... +
T Consensus 84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~----~l~~----~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~ 155 (594)
T 1g7s_A 84 TTLRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM----YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDI 155 (594)
T ss_dssp TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH----HHHH----TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCH
T ss_pred HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH----HHHH----cCCeEEEEecccccccccccccCCchHHHHHHhHH
Confidence 8887778889999999999998 55554332 2211 47899999999999743211 1
Q ss_pred H-----------HHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhh
Q 029437 141 E-----------LRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQY 191 (193)
Q Consensus 141 ~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~ 191 (193)
+ +.+.+....+.... ...+. ......+++++||++|.|+++++++|...
T Consensus 156 ~v~~~~~e~i~ei~~~L~e~gl~~e~-~~~l~-~~~~~vpvv~vSA~tG~GI~eLl~~I~~~ 215 (594)
T 1g7s_A 156 QVQQKLDTKVYELVGKLHEEGFESER-FDRVT-DFASQVSIIPISAITGEGIPELLTMLMGL 215 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEE-GGGCS-CTTTEEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCcchHH-HHHHH-hccCcceEEEEeccCCCCchhHHHHHHhh
Confidence 1 11111111100000 00011 11245789999999999999999999764
No 165
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.85 E-value=9.5e-21 Score=149.05 Aligned_cols=157 Identities=18% Similarity=0.079 Sum_probs=101.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCc---cc---------------------------------cCCCCCcceeEEE
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERL---VQ---------------------------------HQPTQYPTSEELS 60 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~---~~---------------------------------~~~t~~~~~~~~~ 60 (193)
.+..++|+++|++|+|||||+++|++... .. ...|.......+.
T Consensus 21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~ 100 (434)
T 1zun_B 21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS 100 (434)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee
Confidence 34568999999999999999999975431 00 0112333344456
Q ss_pred eCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC--
Q 029437 61 IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAAS-- 138 (193)
Q Consensus 61 ~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~-- 138 (193)
..+..+.+|||||+..+...+...+..+|++++|+|+++... .+..+++...... ...|+++++||+|+.....
T Consensus 101 ~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~~~~---~~~~iIvviNK~Dl~~~~~~~ 176 (434)
T 1zun_B 101 TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYIASLL---GIKHIVVAINKMDLNGFDERV 176 (434)
T ss_dssp CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHHHHT---TCCEEEEEEECTTTTTSCHHH
T ss_pred cCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCeEEEEEEcCcCCcccHHH
Confidence 677899999999999998888888899999999999988642 2233333322221 1236999999999975321
Q ss_pred HHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHH
Q 029437 139 EEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGF 185 (193)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~ 185 (193)
.+++.++..... . ... ......+++++||++|.|+++++
T Consensus 177 ~~~i~~~~~~~~-~-~~g------~~~~~~~~i~vSA~~g~gi~~~~ 215 (434)
T 1zun_B 177 FESIKADYLKFA-E-GIA------FKPTTMAFVPMSALKGDNVVNKS 215 (434)
T ss_dssp HHHHHHHHHHHH-H-TTT------CCCSEEEEEECCTTTCTTTSSCC
T ss_pred HHHHHHHHHHHH-H-HhC------CCccCceEEEEeccCCCCccccc
Confidence 111222221100 0 000 00134789999999999998843
No 166
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.85 E-value=1e-20 Score=149.61 Aligned_cols=157 Identities=13% Similarity=0.041 Sum_probs=105.3
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhcCC--cc--------------------------------ccCCCCCcceeEEEe
Q 029437 16 LWQKEAKILFLGLDNAGKTTLLHMLKDER--LV--------------------------------QHQPTQYPTSEELSI 61 (193)
Q Consensus 16 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~--~~--------------------------------~~~~t~~~~~~~~~~ 61 (193)
..+..++|+++|++++|||||+++|++.. +. ....|.+.....+..
T Consensus 3 ~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~ 82 (458)
T 1f60_A 3 KEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET 82 (458)
T ss_dssp CCCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC
T ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEec
Confidence 34567999999999999999999997531 10 123466666677788
Q ss_pred CCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChh---hHH---HHHHHHHHHHcCCCCCCCc-EEEEEeCCCCC
Q 029437 62 GKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKE---RFA---ESKKELDALLSDEALANVP-FLVLGNKIDIP 134 (193)
Q Consensus 62 ~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~---~~~---~~~~~~~~~~~~~~~~~~p-viiv~nK~D~~ 134 (193)
.+..+.+|||||+..+...+...+..+|++++|+|+++.. +|+ +..+.+..... .++| +++++||+|+.
T Consensus 83 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~----~~v~~iivviNK~Dl~ 158 (458)
T 1f60_A 83 PKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT----LGVRQLIVAVNKMDSV 158 (458)
T ss_dssp SSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH----TTCCEEEEEEECGGGG
T ss_pred CCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH----cCCCeEEEEEEccccc
Confidence 8899999999999999988888899999999999998763 121 23333322211 3565 99999999997
Q ss_pred CCCC--HHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhH
Q 029437 135 YAAS--EEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDG 184 (193)
Q Consensus 135 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el 184 (193)
.... .+++.+++.......... ...++++++||++|.|+.++
T Consensus 159 ~~~~~~~~~i~~~~~~~l~~~g~~--------~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 159 KWDESRFQEIVKETSNFIKKVGYN--------PKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCC--------GGGCCEEECCTTTCBTTTBC
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCC--------ccCceEEEeecccCcCcccc
Confidence 3211 112222221100000000 02357899999999999754
No 167
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.85 E-value=8.4e-21 Score=138.92 Aligned_cols=168 Identities=10% Similarity=0.050 Sum_probs=102.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcccc-----CCCCCcceeEEEeCCEEEEEEEcCCh--------hhhHhhHHh
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQH-----QPTQYPTSEELSIGKIKFKAFDLGGH--------QIARRVWKD 83 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-----~~t~~~~~~~~~~~~~~~~~~D~~G~--------~~~~~~~~~ 83 (193)
....++|+++|.+|||||||+|++++...... ..|.........+.+..+.+|||||. +.+......
T Consensus 18 ~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~ 97 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGH 97 (247)
T ss_dssp --CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHH
T ss_pred CCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHH
Confidence 35679999999999999999999998875431 24556667778888999999999995 222222222
Q ss_pred h----cccCCEEEEEEECCChhh-HHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCcc
Q 029437 84 Y----YAKVDAVVYLVDAYDKER-FAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKV 158 (193)
Q Consensus 84 ~----~~~~d~vl~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (193)
. .+.+|++|+|+|+++... ...+.+++...+. ....+.|++++.||.|+... ..++.........+..
T Consensus 98 ~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~-~~~~~~~iilv~nK~Dl~~~-~~~~~l~~~~~~~l~~----- 170 (247)
T 3lxw_A 98 CYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFG-EDVLKWMVIVFTRKEDLAGG-SLHDYVSNTENRALRE----- 170 (247)
T ss_dssp HHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHC-GGGGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHH-----
T ss_pred HHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhC-hhhhccEEEEEEchHhcCCC-CHHHHHhhcccHHHHH-----
Confidence 2 389999999999975321 2233344444432 12237899999999999653 2332221110000000
Q ss_pred ccCCCCCcceEEEEeeee---cCCChhhHHHhhhhhc
Q 029437 159 NLADSNVRPLEVFMCSIV---RKMGYGDGFKWLSQYI 192 (193)
Q Consensus 159 ~~~~~~~~~~~~~~~Sa~---~g~gv~el~~~i~~~~ 192 (193)
+.+.+...+.++..++. .+.|+++|++.|.+.+
T Consensus 171 -l~~~~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~ 206 (247)
T 3lxw_A 171 -LVAECGGRVCAFDNRATGREQEAQVEQLLGMVEGLV 206 (247)
T ss_dssp -HHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHcCCeEEEEeCCCCccccHHHHHHHHHHHHHHH
Confidence 00000112233333333 3789999999997754
No 168
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.84 E-value=9.7e-21 Score=146.27 Aligned_cols=77 Identities=23% Similarity=0.551 Sum_probs=69.7
Q ss_pred EEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCC----------hhhHHHHHHHHHHHHcCCCCCCCcEEEE
Q 029437 58 ELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYD----------KERFAESKKELDALLSDEALANVPFLVL 127 (193)
Q Consensus 58 ~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~pviiv 127 (193)
.+.++++.+.+|||+|+++++..+..++++++++|+|+|+++ .+++.+...|+..+.+.....++|++++
T Consensus 211 ~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLv 290 (402)
T 1azs_C 211 KFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILF 290 (402)
T ss_dssp EEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEE
T ss_pred EeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEE
Confidence 345567889999999999999999999999999999999999 8899999999999987666678999999
Q ss_pred EeCCCCC
Q 029437 128 GNKIDIP 134 (193)
Q Consensus 128 ~nK~D~~ 134 (193)
+||+|+.
T Consensus 291 gNK~DL~ 297 (402)
T 1azs_C 291 LNKQDLL 297 (402)
T ss_dssp EECHHHH
T ss_pred EEChhhh
Confidence 9999984
No 169
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.84 E-value=1.4e-20 Score=137.06 Aligned_cols=118 Identities=12% Similarity=0.075 Sum_probs=80.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcccc-----CCCCCcceeEEEeCCEEEEEEEcCCh-----------hhhHhh
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQH-----QPTQYPTSEELSIGKIKFKAFDLGGH-----------QIARRV 80 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-----~~t~~~~~~~~~~~~~~~~~~D~~G~-----------~~~~~~ 80 (193)
....++|+|+|++|+|||||++++++..+... ..|.......+.+.+..+.+|||||. ..+...
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~ 105 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRC 105 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHH
Confidence 45679999999999999999999998876432 23455566677888899999999993 344445
Q ss_pred HHhhcccCCEEEEEEECCChhhH-HHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC
Q 029437 81 WKDYYAKVDAVVYLVDAYDKERF-AESKKELDALLSDEALANVPFLVLGNKIDIPYA 136 (193)
Q Consensus 81 ~~~~~~~~d~vl~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~ 136 (193)
.....+.+|++|+|+|+++.... .....++...+.. ....|+++|+||+|+...
T Consensus 106 ~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~--~~~~~~iiv~nK~D~~~~ 160 (239)
T 3lxx_A 106 ILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGE--RARSFMILIFTRKDDLGD 160 (239)
T ss_dssp HHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHH--HHGGGEEEEEECGGGC--
T ss_pred HHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhh--hccceEEEEEeCCccCCc
Confidence 55556788999999998754321 1122222222211 124699999999999744
No 170
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.84 E-value=3.6e-21 Score=142.98 Aligned_cols=156 Identities=15% Similarity=0.174 Sum_probs=84.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-c--------CCCCCcceeEEEe--CC--EEEEEEEcCChh-------hhH
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQ-H--------QPTQYPTSEELSI--GK--IKFKAFDLGGHQ-------IAR 78 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~--------~~t~~~~~~~~~~--~~--~~~~~~D~~G~~-------~~~ 78 (193)
..++|+++|.+|+|||||+|++++.+... . .+|.......... ++ ..+.+|||||.. .+.
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~ 86 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 86 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence 46899999999999999999987665332 1 3455554444433 22 589999999962 222
Q ss_pred hhH-------Hhhcc-------------cCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC
Q 029437 79 RVW-------KDYYA-------------KVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAAS 138 (193)
Q Consensus 79 ~~~-------~~~~~-------------~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~ 138 (193)
.+. ..++. ++|+++++++.+...-......++..+ .. ++|+++|+||+|+.....
T Consensus 87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l-~~----~~pvi~V~nK~D~~~~~e 161 (274)
T 3t5d_A 87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRL-HE----KVNIIPLIAKADTLTPEE 161 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHH-TT----TSCEEEEESSGGGSCHHH
T ss_pred HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHH-hc----cCCEEEEEeccCCCCHHH
Confidence 222 22222 378999999776532112222333333 22 799999999999974322
Q ss_pred HHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 139 EEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
.....+.+..... ...++++.+||+++.|+++++++|.+.+
T Consensus 162 ~~~~~~~i~~~l~-------------~~~i~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 162 CQQFKKQIMKEIQ-------------EHKIKIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp HHHHHHHHHHHHH-------------HTTCCCCCC-----------CHHHHHTC
T ss_pred HHHHHHHHHHHHH-------------HcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence 2222221111110 0224567899999999999999998754
No 171
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.83 E-value=2.4e-20 Score=147.82 Aligned_cols=157 Identities=20% Similarity=0.168 Sum_probs=90.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC--Ccc--------------------------------ccCCCCCcceeEEEeCC
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDE--RLV--------------------------------QHQPTQYPTSEELSIGK 63 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~--~~~--------------------------------~~~~t~~~~~~~~~~~~ 63 (193)
+..++|+++|++++|||||+++|+.. .+. ....|++.....+..++
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 56789999999999999999998641 110 12235555555677778
Q ss_pred EEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChh---hHH---HHHHHHHHHHcCCCCCCCc-EEEEEeCCCCCCC
Q 029437 64 IKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKE---RFA---ESKKELDALLSDEALANVP-FLVLGNKIDIPYA 136 (193)
Q Consensus 64 ~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~---~~~---~~~~~~~~~~~~~~~~~~p-viiv~nK~D~~~~ 136 (193)
..+.+|||||+..|...+...+..+|++|+|+|+++.. +|+ +..+.+.... ..++| +++++||+|+...
T Consensus 121 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~----~~~vp~iivviNK~Dl~~~ 196 (467)
T 1r5b_A 121 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLAR----TQGINHLVVVINKMDEPSV 196 (467)
T ss_dssp EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHH----HTTCSSEEEEEECTTSTTC
T ss_pred eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHH----HcCCCEEEEEEECccCCCc
Confidence 99999999999999888888889999999999998862 221 2222222221 13677 9999999999642
Q ss_pred C-CHH---HHHHhhCCCcccc-CCCccccCCCCCcceEEEEeeeecCCChhhHH
Q 029437 137 A-SEE---ELRYHLGLSNFTT-GKGKVNLADSNVRPLEVFMCSIVRKMGYGDGF 185 (193)
Q Consensus 137 ~-~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~ 185 (193)
. +.+ ++.++........ .... ...++++++||++|.|+.+++
T Consensus 197 ~~~~~~~~~i~~e~~~~l~~~~g~~~-------~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 197 QWSEERYKECVDKLSMFLRRVAGYNS-------KTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHCCCH-------HHHEEEEECBTTTTBTTSSCC
T ss_pred cccHHHHHHHHHHHHHHHHHhcCCCc-------cCCceEEeccccccccccccc
Confidence 2 221 1111111000000 0000 024789999999999998765
No 172
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.82 E-value=9.7e-20 Score=154.46 Aligned_cols=163 Identities=17% Similarity=0.087 Sum_probs=106.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCC-------cc------------ccCCCCCcceeEEEeCCEEEEEEEcCChhhh
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDER-------LV------------QHQPTQYPTSEELSIGKIKFKAFDLGGHQIA 77 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~-------~~------------~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~ 77 (193)
.+..++|+++|++++|||||+++|.+.. +. ....|.......+...+..+.+|||||+..+
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF 372 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY 372 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence 4677999999999999999999997631 10 0112333334455667789999999999999
Q ss_pred HhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCc-EEEEEeCCCCCCCCC-HHHHHHhhCCCccccCC
Q 029437 78 RRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVP-FLVLGNKIDIPYAAS-EEELRYHLGLSNFTTGK 155 (193)
Q Consensus 78 ~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~ 155 (193)
...+...+..+|++|+|+|+++.... +..+++..+.. .++| +|+++||+|+..... .+++.++..........
T Consensus 373 ~~~mi~gas~AD~aILVVDAtdGv~~-QTrEhL~ll~~----lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~ 447 (1289)
T 3avx_A 373 VKNMITGAAQMDGAILVVAATDGPMP-QTREHILLGRQ----VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDF 447 (1289)
T ss_dssp HHHHHHTSCCCSEEEEEEETTTCSCT-THHHHHHHHHH----HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhhCCEEEEEEcCCccCcH-HHHHHHHHHHH----cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccc
Confidence 88888889999999999999885322 23333333321 3678 789999999974211 11111111100000000
Q ss_pred CccccCCCCCcceEEEEeeeecC--------CChhhHHHhhhhhc
Q 029437 156 GKVNLADSNVRPLEVFMCSIVRK--------MGYGDGFKWLSQYI 192 (193)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~Sa~~g--------~gv~el~~~i~~~~ 192 (193)
....++++++||++| .|+++++++|.+.+
T Consensus 448 --------~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I 484 (1289)
T 3avx_A 448 --------PGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYI 484 (1289)
T ss_dssp --------CTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred --------cccceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence 002367999999999 57999999988754
No 173
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.82 E-value=5.3e-20 Score=147.51 Aligned_cols=151 Identities=17% Similarity=0.135 Sum_probs=105.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCC--cc-----------------------ccCCCCCcceeEEEeCCEEEEEEEcC
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDER--LV-----------------------QHQPTQYPTSEELSIGKIKFKAFDLG 72 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~~--~~-----------------------~~~~t~~~~~~~~~~~~~~~~~~D~~ 72 (193)
.+..+|+++|++|+|||||+++++... .. ....|.......+.+.+..+++||||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 345799999999999999999998531 10 01123444556778889999999999
Q ss_pred ChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC---HHHHHHhhCCC
Q 029437 73 GHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAAS---EEELRYHLGLS 149 (193)
Q Consensus 73 G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~---~~~~~~~~~~~ 149 (193)
|+..+......++..+|++|+|+|+++.... .....+... . ..++|+++++||+|+..... .+++.+.++..
T Consensus 91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~-~t~~~~~~~-~---~~~ipiivviNK~Dl~~~~~~~~~~~i~~~l~~~ 165 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVED-RTRKLMEVT-R---LRDTPILTFMNKLDRDIRDPMELLDEVENELKIG 165 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCH-HHHHHHHHH-T---TTTCCEEEEEECTTSCCSCHHHHHHHHHHHHCCE
T ss_pred CChhHHHHHHHHHHHCCEEEEEEeCCccchH-HHHHHHHHH-H---HcCCCEEEEEcCcCCccccHHHHHHHHHHHhCCC
Confidence 9999888788889999999999999876332 223333333 2 24889999999999976543 33455555544
Q ss_pred ccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhh
Q 029437 150 NFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWL 188 (193)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i 188 (193)
. ....+..+|++++.|+.++++.+
T Consensus 166 ~---------------~~~~~pi~sa~~~~Gv~dl~~~~ 189 (529)
T 2h5e_A 166 C---------------APITWPIGCGKLFKGVYHLYKDE 189 (529)
T ss_dssp E---------------EESEEEESCGGGCCEEEETTTTE
T ss_pred c---------------cceecceecccCcceeeehhhhh
Confidence 3 12234447888888887776543
No 174
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.81 E-value=4.9e-19 Score=146.09 Aligned_cols=114 Identities=16% Similarity=0.065 Sum_probs=86.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCC--cc-------------------ccCCCCCcceeEEEeCCEEEEEEEcCChhh
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDER--LV-------------------QHQPTQYPTSEELSIGKIKFKAFDLGGHQI 76 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~~--~~-------------------~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~ 76 (193)
....+|+|+|++|+|||||++++.... +. ...+|.......+.+.+..+++|||||+..
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 89 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVD 89 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTT
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccc
Confidence 456899999999999999999997311 10 123456666777788899999999999999
Q ss_pred hHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC
Q 029437 77 ARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA 136 (193)
Q Consensus 77 ~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~ 136 (193)
+.......+..+|++++|+|+++..+.+... .|..... .++|+++++||+|+...
T Consensus 90 f~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~-~~~~~~~----~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 90 FTIEVERSMRVLDGAIVVFDSSQGVEPQSET-VWRQAEK----YKVPRIAFANKMDKTGA 144 (691)
T ss_dssp CHHHHHHHHHHCSEEEEEEETTTCSCHHHHH-HHHHHHH----TTCCEEEEEECTTSTTC
T ss_pred hHHHHHHHHHHCCEEEEEEECCCCcchhhHH-HHHHHHH----cCCCEEEEEECCCcccC
Confidence 9888888899999999999999876654443 3343433 38999999999999754
No 175
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.81 E-value=5.7e-21 Score=155.05 Aligned_cols=159 Identities=16% Similarity=0.092 Sum_probs=86.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcc----------------------------------ccCCCCCcceeEEEeC
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLV----------------------------------QHQPTQYPTSEELSIG 62 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~----------------------------------~~~~t~~~~~~~~~~~ 62 (193)
.+..++|+++|++|+|||||+++|+...-. ....|.......+..+
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 456789999999999999999999532100 1122444455556666
Q ss_pred CEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChh---hH---HHHHHHHHHHHcCCCCCCCc-EEEEEeCCCCCC
Q 029437 63 KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKE---RF---AESKKELDALLSDEALANVP-FLVLGNKIDIPY 135 (193)
Q Consensus 63 ~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~---~~---~~~~~~~~~~~~~~~~~~~p-viiv~nK~D~~~ 135 (193)
+..+.+|||||+..+...+...+..+|++|+|+|++++. ++ .+..+.+..... .++| +|+++||+|+..
T Consensus 254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~----lgip~iIvviNKiDl~~ 329 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA----LGISEIVVSVNKLDLMS 329 (592)
T ss_dssp -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH----SSCCCEEEEEECGGGGT
T ss_pred CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH----cCCCeEEEEEecccccc
Confidence 789999999999988777777788999999999997531 11 111222222211 2555 999999999974
Q ss_pred CC--CHH----HHHHhh-CCCccccCCCccccCCCCCcceEEEEeeeecCCChh--------------hHHHhhhhh
Q 029437 136 AA--SEE----ELRYHL-GLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYG--------------DGFKWLSQY 191 (193)
Q Consensus 136 ~~--~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~--------------el~~~i~~~ 191 (193)
.. ... ++...+ .... .....++++++||++|.|+. .|++.|...
T Consensus 330 ~~~~~~~~i~~el~~~l~~~~g------------~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~ 394 (592)
T 3mca_A 330 WSEDRFQEIKNIVSDFLIKMVG------------FKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQL 394 (592)
T ss_dssp TCHHHHHHHHHHHHHHHTTTSC------------CCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTS
T ss_pred ccHHHHHHHHHHHHHHHHHhhC------------CCccceEEEEEecccCcccccccccccccccchHHHHHHHHhh
Confidence 21 111 222222 1000 00134689999999999998 688877654
No 176
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.81 E-value=2e-19 Score=128.27 Aligned_cols=154 Identities=20% Similarity=0.233 Sum_probs=94.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCcce--eEEEeCCEEEEEEEcCChh----------hhHhhHHhh
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDERLV-QHQPTQYPTS--EELSIGKIKFKAFDLGGHQ----------IARRVWKDY 84 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~--~~~~~~~~~~~~~D~~G~~----------~~~~~~~~~ 84 (193)
....+|+++|++|||||||++++.+..+. ...++.+... ..+.+.+ .+.+|||||.. .++.....+
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 102 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRALGEY 102 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET-TEEEEECCCCC------CCHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC-CEEEEECcCCcccccCHHHHHHHHHHHHHH
Confidence 45679999999999999999999987732 2234443322 2233333 57899999973 233333334
Q ss_pred c---ccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCH----HHHHHhhCCCccccCCCc
Q 029437 85 Y---AKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASE----EELRYHLGLSNFTTGKGK 157 (193)
Q Consensus 85 ~---~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~----~~~~~~~~~~~~~~~~~~ 157 (193)
+ ..++++++++|+.++.+... ..+..++. ..+.|+++++||+|+...... ..+...+....
T Consensus 103 ~~~~~~~~~~~~v~d~~~~~~~~~--~~~~~~~~---~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~------- 170 (210)
T 1pui_A 103 LEKRQSLQGLVVLMDIRHPLKDLD--QQMIEWAV---DSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFN------- 170 (210)
T ss_dssp HHHCTTEEEEEEEEETTSCCCHHH--HHHHHHHH---HTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGC-------
T ss_pred HHhhhcccEEEEEEECCCCCchhH--HHHHHHHH---HcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcC-------
Confidence 3 46789999999987644321 11122221 147899999999998742211 11222221110
Q ss_pred cccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 158 VNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 158 ~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
.....+++||+++.|+++++++|.+.+
T Consensus 171 --------~~~~~~~~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 171 --------GDVQVETFSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp --------SCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred --------CCCceEEEeecCCCCHHHHHHHHHHHH
Confidence 235788999999999999999998754
No 177
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.81 E-value=2.7e-19 Score=135.24 Aligned_cols=174 Identities=16% Similarity=0.175 Sum_probs=103.2
Q ss_pred hHHHHHHHHHhhCCC-CCccEEEEEcCCCCCHHHHHHHHhcCCccccCC---CCCc----c-------------------
Q 029437 3 LLDWFYGVLASLGLW-QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQP---TQYP----T------------------- 55 (193)
Q Consensus 3 ~~~~~~~~~~~~~~~-~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~---t~~~----~------------------- 55 (193)
+++-+++.+...+.. ...++|+|+|++|||||||+|++++..+.+... |..+ .
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~ 85 (315)
T 1jwy_B 6 VINKLQDVFNTLGSDPLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFL 85 (315)
T ss_dssp HHHHHHHHTTTSSSCTTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEES
T ss_pred HHHHHHHHHHHcCCCCCCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhh
Confidence 355566666555543 466899999999999999999999887622110 1110 0
Q ss_pred ----------------------------------eeEE--Ee-CCEEEEEEEcCChhh-------------hHhhHHhhc
Q 029437 56 ----------------------------------SEEL--SI-GKIKFKAFDLGGHQI-------------ARRVWKDYY 85 (193)
Q Consensus 56 ----------------------------------~~~~--~~-~~~~~~~~D~~G~~~-------------~~~~~~~~~ 85 (193)
...+ .. ....+.+|||||... +......++
T Consensus 86 ~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (315)
T 1jwy_B 86 HKPNDMFYDFSEIREEIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYI 165 (315)
T ss_dssp SSTTCCBCCTHHHHHHHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHH
T ss_pred cccccccCCHHHHHHHHHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHH
Confidence 0001 11 235799999999643 445666778
Q ss_pred ccCCEEEEEEECCChhhH-HHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCC
Q 029437 86 AKVDAVVYLVDAYDKERF-AESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSN 164 (193)
Q Consensus 86 ~~~d~vl~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (193)
..+|++++|+|..+.... ......+..+ .. .+.|+++|+||+|+..... +..+.+.... ....
T Consensus 166 ~~~d~iilvvd~~~~~~~~~~~~~i~~~~-~~---~~~~~i~v~NK~Dl~~~~~--~~~~~~~~~~----------~~~~ 229 (315)
T 1jwy_B 166 KKQNAIIVAVTPANTDLANSDALQLAKEV-DP---EGKRTIGVITKLDLMDKGT--DAMEVLTGRV----------IPLT 229 (315)
T ss_dssp HSTTEEEEEEEESSSCSTTCSHHHHHHHH-CS---SCSSEEEEEECTTSSCSSC--CCHHHHTTSS----------SCCT
T ss_pred cCCCeEEEEEEecCcchhhhHHHHHHHHh-CC---CCCcEEEEEcCcccCCcch--HHHHHHhCCC----------ccCC
Confidence 899999999997433211 1111222222 22 4789999999999974432 1111111110 0000
Q ss_pred CcceEEEEeeeec---CCChhhHHHhhhhhc
Q 029437 165 VRPLEVFMCSIVR---KMGYGDGFKWLSQYI 192 (193)
Q Consensus 165 ~~~~~~~~~Sa~~---g~gv~el~~~i~~~~ 192 (193)
....++..+|+.+ +.|+.++++.+.+.+
T Consensus 230 ~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~ 260 (315)
T 1jwy_B 230 LGFIGVINRSQEDIIAKKSIRESLKSEILYF 260 (315)
T ss_dssp TCEEECCCCCHHHHSSSCCHHHHHHHHHHHH
T ss_pred CCeEEEecCChhhhccCCCHHHHHHHHHHHH
Confidence 1234556667777 889999998876543
No 178
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.80 E-value=9.3e-19 Score=143.99 Aligned_cols=112 Identities=18% Similarity=0.122 Sum_probs=85.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcc---------------------ccCCCCCcceeEEEeCCEEEEEEEcCChhh
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDERLV---------------------QHQPTQYPTSEELSIGKIKFKAFDLGGHQI 76 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~---------------------~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~ 76 (193)
....+|+|+|++|+|||||++++.+.... ....+.......+.+....+++|||||+..
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~ 86 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD 86 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence 45578999999999999999999843221 012244445566777889999999999999
Q ss_pred hHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCC
Q 029437 77 ARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIP 134 (193)
Q Consensus 77 ~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~ 134 (193)
+.......+..+|++++|+|+++.... ....++..... .++|+++++||+|+.
T Consensus 87 f~~~~~~~l~~ad~~ilVvD~~~g~~~-qt~~~~~~~~~----~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 87 FVGEIRGALEAADAALVAVSAEAGVQV-GTERAWTVAER----LGLPRMVVVTKLDKG 139 (665)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCSCH-HHHHHHHHHHH----TTCCEEEEEECGGGC
T ss_pred hHHHHHHHHhhcCcEEEEEcCCcccch-hHHHHHHHHHH----ccCCEEEEecCCchh
Confidence 988888889999999999998775432 23344444433 378999999999997
No 179
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.80 E-value=4.1e-19 Score=131.03 Aligned_cols=125 Identities=17% Similarity=0.138 Sum_probs=83.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccccC----CCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhc-------
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQ----PTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYY------- 85 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~------- 85 (193)
.++.++|+++|++|+|||||++++++..+.... .|.......+.+++..+.+|||||+..+......++
T Consensus 33 ~~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l 112 (262)
T 3def_A 33 DMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFL 112 (262)
T ss_dssp TCCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHH
Confidence 357899999999999999999999988753322 245556667788899999999999865532221111
Q ss_pred --ccCCEEEEEEECCChhhHHHHH-HHHHHHHcCC-CCCCCcEEEEEeCCCCC--CCCCHHHH
Q 029437 86 --AKVDAVVYLVDAYDKERFAESK-KELDALLSDE-ALANVPFLVLGNKIDIP--YAASEEEL 142 (193)
Q Consensus 86 --~~~d~vl~v~d~~~~~~~~~~~-~~~~~~~~~~-~~~~~pviiv~nK~D~~--~~~~~~~~ 142 (193)
..+|++++|++++... +.... .++..+.... .....|+++++||+|+. +....++.
T Consensus 113 ~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~e~~ 174 (262)
T 3def_A 113 VNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETF 174 (262)
T ss_dssp TTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCCHHHH
T ss_pred hcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCccHHHH
Confidence 2789999999986543 22222 3333332111 11135999999999996 33444443
No 180
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.79 E-value=6.6e-19 Score=145.41 Aligned_cols=167 Identities=19% Similarity=0.241 Sum_probs=102.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcccc--CCCCC-cc--------eeEEEe-------------------------
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQH--QPTQY-PT--------SEELSI------------------------- 61 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~--~~t~~-~~--------~~~~~~------------------------- 61 (193)
...++|+|+|.+|+|||||+|+|.+.+..+. .|+.. +. .....+
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~ 146 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA 146 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence 4678999999999999999999998875442 22221 00 001110
Q ss_pred ---------------------CC----EEEEEEEcCChhhh---HhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHH
Q 029437 62 ---------------------GK----IKFKAFDLGGHQIA---RRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDAL 113 (193)
Q Consensus 62 ---------------------~~----~~~~~~D~~G~~~~---~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~ 113 (193)
+. ..+.+|||||.... ......+++.+|++|+|+|++++.+..... .+...
T Consensus 147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~-~l~~~ 225 (695)
T 2j69_A 147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERR-YLENY 225 (695)
T ss_dssp HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHH-HHHHH
T ss_pred HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHH-HHHHH
Confidence 00 35899999997653 345556778999999999998876654443 33333
Q ss_pred HcCCCCCCCcEEEEEeCCCCCCCC--CHH---H-------HHHhhCCCccccCCCccccCCCCCcceEEEEeeee-----
Q 029437 114 LSDEALANVPFLVLGNKIDIPYAA--SEE---E-------LRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIV----- 176 (193)
Q Consensus 114 ~~~~~~~~~pviiv~nK~D~~~~~--~~~---~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~----- 176 (193)
+.. .+.|+++|+||+|+.... +.+ + +........ ..... ..........++++||+
T Consensus 226 l~~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l-~~~~~---~~g~~~~~~~v~~vSAk~al~~ 298 (695)
T 2j69_A 226 IKG---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANL-AEYCT---VEGQNIYDERVFELSSIQALRR 298 (695)
T ss_dssp TTT---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHH-GGGGB---SSSCBCGGGTEEECCHHHHHHH
T ss_pred HHh---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHH-HHhhc---ccccccCCCcEEEEeChHHHHh
Confidence 322 367899999999986321 111 1 111110000 00000 00000022458999999
Q ss_pred ---------cCCChhhHHHhhhhhc
Q 029437 177 ---------RKMGYGDGFKWLSQYI 192 (193)
Q Consensus 177 ---------~g~gv~el~~~i~~~~ 192 (193)
+|.|+++++++|.+.+
T Consensus 299 ~~~~~~~~~~~~Gi~~L~~~L~~~l 323 (695)
T 2j69_A 299 RLKNPQADLDGTGFPKFMDSLNTFL 323 (695)
T ss_dssp HHHCTTCCCTTSSHHHHHHHHHHHH
T ss_pred hccCchhhhhccCHHHHHHHHHHHH
Confidence 9999999999987654
No 181
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.77 E-value=7.6e-18 Score=139.09 Aligned_cols=114 Identities=20% Similarity=0.122 Sum_probs=86.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhc--CCcc-------------------ccCCCCCcceeEEEeCCEEEEEEEcCChhh
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKD--ERLV-------------------QHQPTQYPTSEELSIGKIKFKAFDLGGHQI 76 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~--~~~~-------------------~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~ 76 (193)
....+|+|+|++|+|||||+++++. ..+. ....|.......+.+.+..+++|||||+..
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 87 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVD 87 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcc
Confidence 4567999999999999999999984 1111 112355555667788889999999999998
Q ss_pred hHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC
Q 029437 77 ARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA 136 (193)
Q Consensus 77 ~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~ 136 (193)
+.......+..+|++|+|+|+++..+.+.. ..|..... .++|+++++||+|+...
T Consensus 88 f~~~~~~~l~~aD~~llVvDa~~g~~~~~~-~~~~~~~~----~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 88 FTVEVERSLRVLDGAVTVLDAQSGVEPQTE-TVWRQATT----YGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp CCHHHHHHHHHCSEEEEEEETTTBSCHHHH-HHHHHHHH----TTCCEEEEEECTTSTTC
T ss_pred hHHHHHHHHHHCCEEEEEECCCCCCcHHHH-HHHHHHHH----cCCCEEEEEECCCcccc
Confidence 888888888999999999999887554443 34444433 38899999999999764
No 182
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.77 E-value=1.1e-17 Score=138.40 Aligned_cols=115 Identities=17% Similarity=0.004 Sum_probs=85.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCC--cc-------------------ccCCCCCcceeEEEeCC-------EEEEE
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDER--LV-------------------QHQPTQYPTSEELSIGK-------IKFKA 68 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~--~~-------------------~~~~t~~~~~~~~~~~~-------~~~~~ 68 (193)
..+..+|+|+|++|+|||||++++.... +. ....|.......+.+.+ ..+++
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~l 86 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINI 86 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEE
Confidence 3456799999999999999999996421 11 01123344445566665 89999
Q ss_pred EEcCChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC
Q 029437 69 FDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA 136 (193)
Q Consensus 69 ~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~ 136 (193)
|||||+..+.......+..+|++|+|+|+++....+. ...|..... .++|+++++||+|+...
T Consensus 87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt-~~~~~~~~~----~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQS-ETVWRQANK----YKVPRIAFVNKMDRMGA 149 (704)
T ss_pred EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHH-HHHHHHHHH----cCCCEEEEEeCCCcccc
Confidence 9999999998888888899999999999988654333 334443322 37899999999999754
No 183
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.76 E-value=3.2e-18 Score=131.39 Aligned_cols=156 Identities=14% Similarity=0.102 Sum_probs=95.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccccCC---CCCcc---------------------------------------
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQP---TQYPT--------------------------------------- 55 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~---t~~~~--------------------------------------- 55 (193)
...++|+|+|.+|||||||++++.+.++.+... |..+.
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 356799999999999999999999988642110 11111
Q ss_pred ------------eeEEEeC-CEEEEEEEcCChh-------------hhHhhHHhhcccCC-EEEEEEECCChhhHHHHHH
Q 029437 56 ------------SEELSIG-KIKFKAFDLGGHQ-------------IARRVWKDYYAKVD-AVVYLVDAYDKERFAESKK 108 (193)
Q Consensus 56 ------------~~~~~~~-~~~~~~~D~~G~~-------------~~~~~~~~~~~~~d-~vl~v~d~~~~~~~~~~~~ 108 (193)
...+... ...+.+|||||.. .+..+...++...+ ++++|.+++....-.....
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~ 188 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 188 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHH
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHH
Confidence 0011111 3679999999952 34556666666554 5566777754322122222
Q ss_pred HHHHHHcCCCCCCCcEEEEEeCCCCCCCCC-HHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHh
Q 029437 109 ELDALLSDEALANVPFLVLGNKIDIPYAAS-EEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKW 187 (193)
Q Consensus 109 ~~~~~~~~~~~~~~pviiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~ 187 (193)
++..+ . ..+.|+++|+||+|+..... ..+..+ .... ........++++||++|.|+++++++
T Consensus 189 i~~~~-~---~~~~~~i~V~NK~Dl~~~~~~~~~~~~---~~~~----------~l~~~~~~v~~~SA~~~~~i~~l~~~ 251 (353)
T 2x2e_A 189 VAKEV-D---PQGQRTIGVITKLDLMDEGTDARDVLE---NKLL----------PLRRGYIGVVNRSQKDIDGKKDITAA 251 (353)
T ss_dssp HHHHH-C---TTCTTEEEEEECGGGSCTTCCCHHHHT---TCSS----------CCTTCEEECCCCCHHHHHTTCCHHHH
T ss_pred HHHHh-C---cCCCceEEEeccccccCcchhHHHHHh---CCcc----------cccCCceEEEeCCcccccccccHHHH
Confidence 33333 2 24789999999999974322 122211 1110 00113357889999999999999998
Q ss_pred hhh
Q 029437 188 LSQ 190 (193)
Q Consensus 188 i~~ 190 (193)
|.+
T Consensus 252 l~~ 254 (353)
T 2x2e_A 252 LAA 254 (353)
T ss_dssp HHH
T ss_pred HHH
Confidence 865
No 184
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.76 E-value=2.1e-18 Score=134.21 Aligned_cols=154 Identities=21% Similarity=0.219 Sum_probs=103.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc-c--cCCCCCcceeEEEeCC-EEEEEEEcCChhhh-------HhhHHhhcccCC
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDERLV-Q--HQPTQYPTSEELSIGK-IKFKAFDLGGHQIA-------RRVWKDYYAKVD 89 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~~~-~--~~~t~~~~~~~~~~~~-~~~~~~D~~G~~~~-------~~~~~~~~~~~d 89 (193)
..++|+|++|||||||++++++.... . ...|..++...+...+ ..+.+||+||.... .......+..++
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~ 237 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 237 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence 45899999999999999999887532 1 1234556666677665 78999999996321 111222346799
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHcCC-CCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcce
Q 029437 90 AVVYLVDAYDKERFAESKKELDALLSDE-ALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPL 168 (193)
Q Consensus 90 ~vl~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (193)
.+++++|++ ...+.++..+..+..... .....|.++++||+|+......+++.+.+.. ...
T Consensus 238 ~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~~-----------------~g~ 299 (416)
T 1udx_A 238 VLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALAR-----------------EGL 299 (416)
T ss_dssp EEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHT-----------------TTS
T ss_pred hhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHHHh-----------------cCC
Confidence 999999997 444555555555443211 1236899999999999743111222222211 124
Q ss_pred EEEEeeeecCCChhhHHHhhhhhc
Q 029437 169 EVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 169 ~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
.++.+||+++.|+++++++|.+.+
T Consensus 300 ~vi~iSA~~g~gi~eL~~~i~~~l 323 (416)
T 1udx_A 300 AVLPVSALTGAGLPALKEALHALV 323 (416)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHH
T ss_pred eEEEEECCCccCHHHHHHHHHHHH
Confidence 689999999999999999998764
No 185
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.76 E-value=6.8e-20 Score=140.83 Aligned_cols=155 Identities=13% Similarity=0.171 Sum_probs=73.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCC-ccccC---------CCCCcceeEE--EeCC--EEEEEEEcCCh-------hh
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDER-LVQHQ---------PTQYPTSEEL--SIGK--IKFKAFDLGGH-------QI 76 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~---------~t~~~~~~~~--~~~~--~~~~~~D~~G~-------~~ 76 (193)
...++|+|+|++|+|||||++++.+.. +.... +|........ ...+ ..+++|||||. +.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 456899999999999999999987654 22111 2322222222 2222 47999999998 54
Q ss_pred hHhhHH-------hhcc-------------cCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC
Q 029437 77 ARRVWK-------DYYA-------------KVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA 136 (193)
Q Consensus 77 ~~~~~~-------~~~~-------------~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~ 136 (193)
+..+.. .++. ++|+++|+++.. ..++......+...+. .++|+|+|+||+|+...
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l~----~~~piIlV~NK~Dl~~~ 189 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAIH----NKVNIVPVIAKADTLTL 189 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHTC----S-SCEEEEEECCSSSCH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHhc----cCCCEEEEEECCCCCCH
Confidence 544433 3333 235666666642 2234444433333322 58999999999999743
Q ss_pred CCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhh
Q 029437 137 ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQY 191 (193)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~ 191 (193)
.............. . ...++++++||++|.| ++.|.++.+.
T Consensus 190 ~ev~~~k~~i~~~~-----------~--~~~i~~~~~Sa~~~~~-~e~~~~l~~~ 230 (361)
T 2qag_A 190 KERERLKKRILDEI-----------E--EHNIKIYHLPDAESDE-DEDFKEQTRL 230 (361)
T ss_dssp HHHHHHHHHHHHHT-----------T--CC-CCSCCCC----------CHHHHHH
T ss_pred HHHHHHHHHHHHHH-----------H--HCCCCEEeCCCcCCCc-chhHHHHHHH
Confidence 21111111111000 0 0235678999999998 7666665544
No 186
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.76 E-value=4e-17 Score=131.39 Aligned_cols=122 Identities=19% Similarity=0.168 Sum_probs=90.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC---------------------c----cccCCCCCcceeEEEeCCEEEEEEEcCChh
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDER---------------------L----VQHQPTQYPTSEELSIGKIKFKAFDLGGHQ 75 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~---------------------~----~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~ 75 (193)
=+|+|+|+.++|||||..+|+... + .....|+......+.|+++.++++||||+.
T Consensus 32 RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGHv 111 (548)
T 3vqt_A 32 RTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGHQ 111 (548)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCGG
T ss_pred ceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCcH
Confidence 389999999999999999984110 0 012346667788899999999999999999
Q ss_pred hhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC---HHHHHHhhC
Q 029437 76 IARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAAS---EEELRYHLG 147 (193)
Q Consensus 76 ~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~---~~~~~~~~~ 147 (193)
.|.......++-+|++|+|+|+.+.-.. +....|+.... .++|+++++||+|...+.. .+++.+.++
T Consensus 112 DF~~Ev~raL~~~DgAvlVvda~~GV~~-qT~~v~~~a~~----~~lp~i~fINK~Dr~~ad~~~~~~~i~~~l~ 181 (548)
T 3vqt_A 112 DFSEDTYRVLTAVDSALVVIDAAKGVEA-QTRKLMDVCRM----RATPVMTFVNKMDREALHPLDVMADIEQHLQ 181 (548)
T ss_dssp GCSHHHHHHHHSCSEEEEEEETTTBSCH-HHHHHHHHHHH----TTCCEEEEEECTTSCCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCceEEEeecCCCccc-ccHHHHHHHHH----hCCceEEEEecccchhcchhHhhhhhhhhcC
Confidence 9998888889999999999999886433 33344555544 4899999999999975432 233555554
No 187
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.74 E-value=5.5e-19 Score=137.11 Aligned_cols=80 Identities=23% Similarity=0.177 Sum_probs=47.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc-ccC--CCCCcceeEEE---------------------eC---CEEEEEEEcCC
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDERLV-QHQ--PTQYPTSEELS---------------------IG---KIKFKAFDLGG 73 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~~~-~~~--~t~~~~~~~~~---------------------~~---~~~~~~~D~~G 73 (193)
++|+++|.||+|||||+|++++.... ... .|..++..... +. ...+.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 48999999999999999999987622 122 24444444321 12 36899999999
Q ss_pred hhhh----HhhHH---hhcccCCEEEEEEECCCh
Q 029437 74 HQIA----RRVWK---DYYAKVDAVVYLVDAYDK 100 (193)
Q Consensus 74 ~~~~----~~~~~---~~~~~~d~vl~v~d~~~~ 100 (193)
.... +.+.. ..++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 8542 22222 345789999999999774
No 188
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.74 E-value=1.7e-17 Score=122.94 Aligned_cols=118 Identities=17% Similarity=0.150 Sum_probs=79.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccccCC----CCCcceeEEEeCCEEEEEEEcCChhhhHh-------hHHhh-
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQP----TQYPTSEELSIGKIKFKAFDLGGHQIARR-------VWKDY- 84 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~G~~~~~~-------~~~~~- 84 (193)
....++|+++|.+|+|||||++++++..+....+ |.......+...+..+.+|||||...+.. ....+
T Consensus 36 ~~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~ 115 (270)
T 1h65_A 36 DVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFL 115 (270)
T ss_dssp TCCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence 3467999999999999999999999887643222 33344455667888999999999855421 11222
Q ss_pred -cccCCEEEEEEECCChhhHHHH-HHHHHHHHcCCC-CCCCcEEEEEeCCCCCC
Q 029437 85 -YAKVDAVVYLVDAYDKERFAES-KKELDALLSDEA-LANVPFLVLGNKIDIPY 135 (193)
Q Consensus 85 -~~~~d~vl~v~d~~~~~~~~~~-~~~~~~~~~~~~-~~~~pviiv~nK~D~~~ 135 (193)
...+|++++|+|++.. ++... ..++..+..... ....|+++|+||+|+.+
T Consensus 116 ~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~ 168 (270)
T 1h65_A 116 LDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP 168 (270)
T ss_dssp TTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred hcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCC
Confidence 2478999999998653 23222 234443322111 11279999999999974
No 189
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.73 E-value=7.7e-18 Score=129.60 Aligned_cols=149 Identities=12% Similarity=0.133 Sum_probs=93.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccccCC---CCCc-----------------------------------------
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQP---TQYP----------------------------------------- 54 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~---t~~~----------------------------------------- 54 (193)
.-.+|+|+|++|||||||++++.+..+.+... |..+
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 44599999999999999999999987632211 1000
Q ss_pred -----------ceeEE--Ee-CCEEEEEEEcCChhhh-------------HhhHHhhcccCCEEEEEEECCChhhH-HHH
Q 029437 55 -----------TSEEL--SI-GKIKFKAFDLGGHQIA-------------RRVWKDYYAKVDAVVYLVDAYDKERF-AES 106 (193)
Q Consensus 55 -----------~~~~~--~~-~~~~~~~~D~~G~~~~-------------~~~~~~~~~~~d~vl~v~d~~~~~~~-~~~ 106 (193)
....+ .. ....+.+|||||...+ ..+...++..+|++++|+|..+.... ...
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~ 192 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHH
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHH
Confidence 00011 11 1346899999997654 56667788999999999987553322 222
Q ss_pred HHHHHHHHcCCCCCCCcEEEEEeCCCCCCCC-CHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHH
Q 029437 107 KKELDALLSDEALANVPFLVLGNKIDIPYAA-SEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGF 185 (193)
Q Consensus 107 ~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~ 185 (193)
..+... ....+.|+++|+||+|+.... ...+..+..... ....++++|+.++.++++.+
T Consensus 193 ~~l~~~----~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~----------------~~~~~~~v~~~s~~~i~~~~ 252 (360)
T 3t34_A 193 IKISRE----VDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFK----------------LKYPWVGVVNRSQADINKNV 252 (360)
T ss_dssp HHHHHH----SCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSC----------------CSSCCEEECCCCHHHHHTTC
T ss_pred HHHHHH----hcccCCCEEEEEeCCccCCCcccHHHHHcCcccc----------------ccCCeEEEEECChHHhccCC
Confidence 222222 233578999999999997432 212222211111 22467889999998887765
Q ss_pred Hh
Q 029437 186 KW 187 (193)
Q Consensus 186 ~~ 187 (193)
..
T Consensus 253 ~~ 254 (360)
T 3t34_A 253 DM 254 (360)
T ss_dssp CH
T ss_pred CH
Confidence 54
No 190
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.72 E-value=5.2e-18 Score=130.25 Aligned_cols=158 Identities=15% Similarity=0.099 Sum_probs=93.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCC------cc--ccCCCC-------------------Cccee------------
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDER------LV--QHQPTQ-------------------YPTSE------------ 57 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~------~~--~~~~t~-------------------~~~~~------------ 57 (193)
.....+|+++|++|+|||||++++...- .. ...|.. .+...
T Consensus 76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~ 155 (355)
T 3p32_A 76 SGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGG 155 (355)
T ss_dssp CCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHH
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccc
Confidence 3456799999999999999999985321 00 000000 00000
Q ss_pred ----------EEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEE
Q 029437 58 ----------ELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVL 127 (193)
Q Consensus 58 ----------~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv 127 (193)
.+...+..+.+|||||..... ......+|.+++|+|....+..+.+. ....+.|+++|
T Consensus 156 ~~~~t~d~i~~~~~~~~~~iiiDTpGi~~~~---~~~~~~aD~vl~V~d~~~~~~~~~l~---------~~~~~~p~ivV 223 (355)
T 3p32_A 156 VTRATRETVVLLEAAGFDVILIETVGVGQSE---VAVANMVDTFVLLTLARTGDQLQGIK---------KGVLELADIVV 223 (355)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEECSCSSHH---HHHHTTCSEEEEEEESSTTCTTTTCC---------TTSGGGCSEEE
T ss_pred hhHHHHHHHHHHhhCCCCEEEEeCCCCCcHH---HHHHHhCCEEEEEECCCCCccHHHHH---------HhHhhcCCEEE
Confidence 012246789999999954322 23347899999999987654332111 11235699999
Q ss_pred EeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 128 GNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 128 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
+||+|+............+......... ....+..+++++||++|.|+++++++|.+.+
T Consensus 224 lNK~Dl~~~~~~~~~~~~l~~~l~~~~~------~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~ 282 (355)
T 3p32_A 224 VNKADGEHHKEARLAARELSAAIRLIYP------REALWRPPVLTMSAVEGRGLAELWDTVERHR 282 (355)
T ss_dssp EECCCGGGHHHHHHHHHHHHHHHHHHST------TCCSCCCCEEEEBGGGTBSHHHHHHHHHHHH
T ss_pred EECCCCcChhHHHHHHHHHHHHHhhccc------cccCCCCceEEEEcCCCCCHHHHHHHHHHHH
Confidence 9999996332222222222110000000 0001235689999999999999999998754
No 191
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.69 E-value=7.2e-17 Score=112.94 Aligned_cols=110 Identities=18% Similarity=0.189 Sum_probs=82.0
Q ss_pred EcCChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHH---HHHHcCCC-CCCCcEEEEEeCC-CCCCCCCHHHHHH
Q 029437 70 DLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKEL---DALLSDEA-LANVPFLVLGNKI-DIPYAASEEELRY 144 (193)
Q Consensus 70 D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~---~~~~~~~~-~~~~pviiv~nK~-D~~~~~~~~~~~~ 144 (193)
+.+|+.+++.+|..|+.++|++|||+|++|.+.+. ..+.+ ..++.... ..++|++|++||. |++.+.+..++.+
T Consensus 108 ~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e 186 (227)
T 3l82_B 108 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAH 186 (227)
T ss_dssp ---------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHH
T ss_pred ccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHH
Confidence 34588899999999999999999999999886543 33333 34444432 4689999999995 7888899999999
Q ss_pred hhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhcC
Q 029437 145 HLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK 193 (193)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~~ 193 (193)
.+++..+ .+.+.+..|||++|+|+.|.++||.+.++
T Consensus 187 ~L~L~~l-------------~R~W~Iq~csA~TGeGL~EGLdWL~~~l~ 222 (227)
T 3l82_B 187 ELHLNLL-------------NHPWLVQDTEAETLTGFLNGIEWILEEVE 222 (227)
T ss_dssp HTTGGGG-------------CSCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred HcCCcCC-------------CCCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence 9987661 14688999999999999999999998763
No 192
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.68 E-value=1.5e-16 Score=121.78 Aligned_cols=152 Identities=16% Similarity=0.114 Sum_probs=86.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCc--------cccCCCCC-------------------cce--------e------
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDERL--------VQHQPTQY-------------------PTS--------E------ 57 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~~--------~~~~~t~~-------------------~~~--------~------ 57 (193)
....|+|+|+||||||||+|++.+... ....|+.. ... .
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~t 152 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVT 152 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------C
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccch
Confidence 468899999999999999999985210 00111100 000 0
Q ss_pred --------EEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEe
Q 029437 58 --------ELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGN 129 (193)
Q Consensus 58 --------~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~n 129 (193)
.+...+..+.++||+|..... ......+|.+++|+|++++...+.+.. .+ ...|.++++|
T Consensus 153 r~~~~~~~~~~~~~~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i------l~~~~ivVlN 220 (349)
T 2www_A 153 RTTNEAILLCEGAGYDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDELQGIKR---GI------IEMADLVAVT 220 (349)
T ss_dssp TTHHHHHHHHHHTTCSEEEEECCCC--CH---HHHHTTCSEEEEEECCC---------------------CCSCSEEEEC
T ss_pred HHHHHHHHhhccCCCCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchhHHHhHH---HH------HhcCCEEEEe
Confidence 011345688999999964221 233568999999999977643221111 11 2458899999
Q ss_pred CCCCCCCCCH----HHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 130 KIDIPYAASE----EELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 130 K~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
|+|+...... .++...+.... +.......+++.+||++|.|+++++++|.+.+
T Consensus 221 K~Dl~~~~~~~~~~~~l~~~l~~~~----------~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~ 277 (349)
T 2www_A 221 KSDGDLIVPARRIQAEYVSALKLLR----------KRSQVWKPKVIRISARSGEGISEMWDKMKDFQ 277 (349)
T ss_dssp CCSGGGHHHHHHHHHHHHHHHTTCC---------------CCCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred eecCCCchhHHHHHHHHHHHHHhcC----------ccccCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence 9999632111 11222222111 00000234788999999999999999998753
No 193
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.66 E-value=1.6e-16 Score=127.98 Aligned_cols=114 Identities=21% Similarity=0.216 Sum_probs=77.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcc----ccCCCCCcceeEE-----------------------------------
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDERLV----QHQPTQYPTSEEL----------------------------------- 59 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~----~~~~t~~~~~~~~----------------------------------- 59 (193)
...+|+|+|.+|+|||||+|++++..+. ...|+........
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~ 143 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRF 143 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccc
Confidence 4579999999999999999999998763 2222221100000
Q ss_pred ---EeCC---EEEEEEEcCChhh-----------hHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCC
Q 029437 60 ---SIGK---IKFKAFDLGGHQI-----------ARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANV 122 (193)
Q Consensus 60 ---~~~~---~~~~~~D~~G~~~-----------~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (193)
.... ..+.+|||||... +......++..+|++++|+|+++.........++..+ . ..+.
T Consensus 144 ~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l-~---~~~~ 219 (550)
T 2qpt_A 144 MCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGAL-R---GHED 219 (550)
T ss_dssp EEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHT-T---TCGG
T ss_pred eEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHH-H---hcCC
Confidence 0000 2589999999764 4456667788999999999998753334444444443 2 2368
Q ss_pred cEEEEEeCCCCCCC
Q 029437 123 PFLVLGNKIDIPYA 136 (193)
Q Consensus 123 pviiv~nK~D~~~~ 136 (193)
|+++|+||+|+...
T Consensus 220 pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 220 KIRVVLNKADMVET 233 (550)
T ss_dssp GEEEEEECGGGSCH
T ss_pred CEEEEEECCCccCH
Confidence 99999999999753
No 194
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.66 E-value=3.3e-16 Score=131.80 Aligned_cols=123 Identities=17% Similarity=0.141 Sum_probs=90.2
Q ss_pred HHHHHHHHHhhCCCCCccEEEEEcCCCCCHHHHHHHHhcCC------------cc-------ccCCCCCcceeEEEeC--
Q 029437 4 LDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDER------------LV-------QHQPTQYPTSEELSIG-- 62 (193)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~------------~~-------~~~~t~~~~~~~~~~~-- 62 (193)
.++++..+. ..+...+|+|+|++|+|||||+++++... +. ....|+......+.+.
T Consensus 6 ~~~~~~~m~---~~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~ 82 (842)
T 1n0u_A 6 VDQMRSLMD---KVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMS 82 (842)
T ss_dssp HHHHHHHHH---CGGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECC
T ss_pred HHHHHHHhh---CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEeccc
Confidence 455665543 23455799999999999999999997541 11 1122444444444443
Q ss_pred --------------CEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEE
Q 029437 63 --------------KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLG 128 (193)
Q Consensus 63 --------------~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~ 128 (193)
+..+++|||||+..+.......++.+|++|+|+|+++..+++... .|..... .++|+++++
T Consensus 83 ~~~~~~i~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~-~~~~~~~----~~~p~ilvi 157 (842)
T 1n0u_A 83 DEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTET-VLRQALG----ERIKPVVVI 157 (842)
T ss_dssp HHHHHHCSSCCCSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHH-HHHHHHH----TTCEEEEEE
T ss_pred ccccccccccccCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCeEEEE
Confidence 688999999999999888888999999999999999987665543 3344333 378999999
Q ss_pred eCCCCC
Q 029437 129 NKIDIP 134 (193)
Q Consensus 129 nK~D~~ 134 (193)
||+|+.
T Consensus 158 NK~D~~ 163 (842)
T 1n0u_A 158 NKVDRA 163 (842)
T ss_dssp ECHHHH
T ss_pred ECCCcc
Confidence 999986
No 195
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.65 E-value=5.8e-17 Score=121.68 Aligned_cols=151 Identities=14% Similarity=0.208 Sum_probs=72.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC-CccccC---------CCCCcceeEEEe----CCEEEEEEEcCCh-------hh
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDE-RLVQHQ---------PTQYPTSEELSI----GKIKFKAFDLGGH-------QI 76 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~-~~~~~~---------~t~~~~~~~~~~----~~~~~~~~D~~G~-------~~ 76 (193)
.-.++|+|+|++|||||||++++.+. .+.... ++.......+.. ....+++||++|. +.
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~ 95 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 95 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence 45689999999999999999998875 332211 122211111211 2368999999997 44
Q ss_pred hHhhHH-------hhcc-------------cCCEEEEEEECCChhhHHHHH-HHHHHHHcCCCCCCCcEEEEEeCCCCCC
Q 029437 77 ARRVWK-------DYYA-------------KVDAVVYLVDAYDKERFAESK-KELDALLSDEALANVPFLVLGNKIDIPY 135 (193)
Q Consensus 77 ~~~~~~-------~~~~-------------~~d~vl~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~pviiv~nK~D~~~ 135 (193)
+..+.. .++. .+++++|+.+.+.. +++... +.+..+ . .+.|+++|+||.|+..
T Consensus 96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~-~Ld~~~~~~l~~l----~-~~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH-GLKPLDVAFMKAI----H-NKVNIVPVIAKADTLT 169 (301)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS-SCCHHHHHHHHHH----T-TTSCEEEEECCGGGSC
T ss_pred HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc-CCCHHHHHHHHHH----H-hcCCEEEEEEeCCCCC
Confidence 433332 2221 24555665553221 122222 233332 1 3679999999999974
Q ss_pred CCCH----HHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 136 AASE----EELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 136 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
.... +++.+.... ..+.++++||++| |++++|+++.+.+
T Consensus 170 ~~e~~~~~~~~~~~~~~-----------------~~~~~~e~Sa~~~-~v~e~f~~l~~~i 212 (301)
T 2qnr_A 170 LKERERLKKRILDEIEE-----------------HNIKIYHLPDAES-DEDEDFKEQTRLL 212 (301)
T ss_dssp HHHHHHHHHHHHHHHHH-----------------TTCCCCCCC----------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-----------------cCCeEEecCCccc-cccHHHHHHHHHh
Confidence 2111 111111110 1246789999999 9999999887654
No 196
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.65 E-value=5.6e-17 Score=116.51 Aligned_cols=147 Identities=16% Similarity=0.184 Sum_probs=90.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-------cCCCC----------CcceeEE------------------EeCC
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQ-------HQPTQ----------YPTSEEL------------------SIGK 63 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-------~~~t~----------~~~~~~~------------------~~~~ 63 (193)
...+|+++|++|||||||++++....... ..+.. +.....+ ...+
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 34689999999999999999997542110 01100 0000011 1234
Q ss_pred EEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC--CCHHH
Q 029437 64 IKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA--ASEEE 141 (193)
Q Consensus 64 ~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~--~~~~~ 141 (193)
..+.+|||+|...... .+....+.+++|+|+.+.... ...+. .. .+.|+++++||+|+... ...++
T Consensus 109 ~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~~--~~~~~-~~------~~~~~iiv~NK~Dl~~~~~~~~~~ 176 (221)
T 2wsm_A 109 CDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDV--VEKHP-EI------FRVADLIVINKVALAEAVGADVEK 176 (221)
T ss_dssp CSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTH--HHHCH-HH------HHTCSEEEEECGGGHHHHTCCHHH
T ss_pred CCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcchh--hhhhh-hh------hhcCCEEEEecccCCcchhhHHHH
Confidence 6788999999511111 111256889999998765321 11111 11 25789999999998632 34444
Q ss_pred HHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 142 LRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
+.+.+.... ...+++++||++|.|+++++++|.+.+
T Consensus 177 ~~~~~~~~~---------------~~~~i~~~Sa~~g~gi~~l~~~l~~~~ 212 (221)
T 2wsm_A 177 MKADAKLIN---------------PRAKIIEMDLKTGKGFEEWIDFLRGIL 212 (221)
T ss_dssp HHHHHHHHC---------------TTSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HHHHHHHhC---------------CCCeEEEeecCCCCCHHHHHHHHHHHH
Confidence 444332111 235789999999999999999998764
No 197
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.64 E-value=5.5e-15 Score=112.81 Aligned_cols=80 Identities=20% Similarity=0.279 Sum_probs=59.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcc-ccC--CCCCcceeEEEeCC-----------------EEEEEEEcCChhhhHh
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKDERLV-QHQ--PTQYPTSEELSIGK-----------------IKFKAFDLGGHQIARR 79 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~--~t~~~~~~~~~~~~-----------------~~~~~~D~~G~~~~~~ 79 (193)
.++|+++|.||+|||||++++++..+. ... .|.+++...+.+++ ..+.+|||||......
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence 368999999999999999999987632 222 36666666666654 5799999999875431
Q ss_pred -------hHHhhcccCCEEEEEEECCC
Q 029437 80 -------VWKDYYAKVDAVVYLVDAYD 99 (193)
Q Consensus 80 -------~~~~~~~~~d~vl~v~d~~~ 99 (193)
.+...++.+|++++|+|+++
T Consensus 82 ~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 82 KGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred ccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 22334689999999999975
No 198
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.64 E-value=1.7e-16 Score=129.99 Aligned_cols=166 Identities=19% Similarity=0.181 Sum_probs=114.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC--cc-------------------ccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhh
Q 029437 22 KILFLGLDNAGKTTLLHMLKDER--LV-------------------QHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRV 80 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~~~--~~-------------------~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~ 80 (193)
||+|+|+.++|||||..+|+... .. ....|+......+.|+++.++++|||||..|...
T Consensus 4 Ni~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~E 83 (638)
T 3j25_A 4 NIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLAE 83 (638)
T ss_dssp CCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHHH
Confidence 78999999999999999985211 00 1123555566778889999999999999999998
Q ss_pred HHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC---HHHHHHhhCCCccccCC-C
Q 029437 81 WKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAAS---EEELRYHLGLSNFTTGK-G 156 (193)
Q Consensus 81 ~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~-~ 156 (193)
....++-+|++++|+|+.+.-.. +....|+.... .++|.++++||+|...... .+++.+.++......+. .
T Consensus 84 v~raL~~~DgavlVVDa~~GV~~-qT~~v~~~a~~----~~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~~~~ 158 (638)
T 3j25_A 84 VYRSLSVLDGAILLISAKDGVQA-QTRILFHALRK----MGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVE 158 (638)
T ss_dssp HHHHHTTCSEEECCEESSCTTCS-HHHHHHHHHHH----HTCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCCCCC
T ss_pred HHHHHHHhCEEEEEEeCCCCCcH-HHHHHHHHHHH----cCCCeEEEEeccccccCCHHHHHHHHHHHhCCCccccceeE
Confidence 89999999999999999876332 23344555443 3889999999999975443 23455555432210000 0
Q ss_pred --c-cccCC----------------------------------------CCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 157 --K-VNLAD----------------------------------------SNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 157 --~-~~~~~----------------------------------------~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
. ..... ......+++..||+++.|++.+++.|.+.+
T Consensus 159 ~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~~ 237 (638)
T 3j25_A 159 LYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEVITNKF 237 (638)
T ss_dssp SCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHHHHHHSC
T ss_pred eeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhhhhhccc
Confidence 0 00000 000135678899999999999999998764
No 199
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.63 E-value=1e-14 Score=111.89 Aligned_cols=112 Identities=20% Similarity=0.180 Sum_probs=80.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc-c--cCCCCCcceeEEEeCCEEEEEEEcCChhhh-------HhhHHhhcccCCE
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDERLV-Q--HQPTQYPTSEELSIGKIKFKAFDLGGHQIA-------RRVWKDYYAKVDA 90 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~~~-~--~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~-------~~~~~~~~~~~d~ 90 (193)
.+|+++|.||||||||+|+|++.... . ...|..++...+.+.+.++.++||||.... ...+...++.+|+
T Consensus 73 a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~ 152 (376)
T 4a9a_A 73 ASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNL 152 (376)
T ss_dssp EEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHCSE
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCc
Confidence 48999999999999999999986632 1 234788889999999999999999995321 1223345678999
Q ss_pred EEEEEECCChhh-HHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCC
Q 029437 91 VVYLVDAYDKER-FAESKKELDALLSDEALANVPFLVLGNKIDIP 134 (193)
Q Consensus 91 vl~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~ 134 (193)
+++|+|+++|.. .+.+...+... .....+.|.++++||.|..
T Consensus 153 il~vvD~~~p~~~~~~i~~EL~~~--~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 153 LFIILDVNKPLHHKQIIEKELEGV--GIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp EEEEEETTSHHHHHHHHHHHHHHT--TEEETCCCCCEEEEECSSS
T ss_pred cccccccCccHHHHHHHHHHHHHh--hHhhccCChhhhhhHhhhh
Confidence 999999999843 22222222222 1123467888999999963
No 200
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.63 E-value=2e-16 Score=120.77 Aligned_cols=153 Identities=17% Similarity=0.134 Sum_probs=89.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcC------Ccc--ccCCC--C-----------------Cccee------------
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDE------RLV--QHQPT--Q-----------------YPTSE------------ 57 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~------~~~--~~~~t--~-----------------~~~~~------------ 57 (193)
......|+++|++|+||||+++.+.+. +.. ...+. . .+...
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g 132 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGG 132 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----C
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccch
Confidence 345678999999999999999998532 110 00000 0 00000
Q ss_pred ----------EEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEE
Q 029437 58 ----------ELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVL 127 (193)
Q Consensus 58 ----------~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv 127 (193)
.+.+.+..+.++||||....... ....+|++++|+|++....++.+.. .. .+.|.++|
T Consensus 133 ~~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~---~~------~~~p~ivv 200 (341)
T 2p67_A 133 ASQRARELMLLCEAAGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK---GL------MEVADLIV 200 (341)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH---HH------HHHCSEEE
T ss_pred hHHHHHHHHHHhhccCCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH---hh------hcccCEEE
Confidence 00134678999999996544332 3478999999999976532211100 00 15688999
Q ss_pred EeCCCCCCCCCHH----HHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhh
Q 029437 128 GNKIDIPYAASEE----ELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQY 191 (193)
Q Consensus 128 ~nK~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~ 191 (193)
+||+|+....... ++...++... . . . ..+..+++++||++|.|+++++++|.+.
T Consensus 201 ~NK~Dl~~~~~~~~~~~~l~~~l~~~~----~----~-~-~~~~~~vi~iSA~~g~gi~~L~~~l~~~ 258 (341)
T 2p67_A 201 INKDDGDNHTNVAIARHMYESALHILR----R----K-Y-DEWQPRVLTCSALEKRGIDEIWHAIIDF 258 (341)
T ss_dssp ECCCCTTCHHHHHHHHHHHHHHHHHSC----C----S-B-TTBCCEEEECBGGGTBSHHHHHHHHHHH
T ss_pred EECCCCCChHHHHHHHHHHHHHHHhcc----c----c-c-cCCCCcEEEeeCCCCCCHHHHHHHHHHH
Confidence 9999997432222 1222111100 0 0 0 0013478999999999999999999764
No 201
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.63 E-value=1e-14 Score=120.39 Aligned_cols=156 Identities=14% Similarity=0.092 Sum_probs=97.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccccCC---CCCc----------------------------------------
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQP---TQYP---------------------------------------- 54 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~---t~~~---------------------------------------- 54 (193)
..-.+|+|+|.+++|||||+|++++..+.+... |.-+
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 466899999999999999999999987632110 1100
Q ss_pred -----------ceeEEEeC-CEEEEEEEcCChhh-------------hHhhHHhhc-ccCCEEEEEEECCChhhHHHHHH
Q 029437 55 -----------TSEELSIG-KIKFKAFDLGGHQI-------------ARRVWKDYY-AKVDAVVYLVDAYDKERFAESKK 108 (193)
Q Consensus 55 -----------~~~~~~~~-~~~~~~~D~~G~~~-------------~~~~~~~~~-~~~d~vl~v~d~~~~~~~~~~~~ 108 (193)
....+... ...+.++||||... ...+...++ ..+|++++|+|+++.........
T Consensus 129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ 208 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 208 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence 00111111 13578999999432 333444444 57899999999986532222222
Q ss_pred HHHHHHcCCCCCCCcEEEEEeCCCCCCCCCH-HHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHh
Q 029437 109 ELDALLSDEALANVPFLVLGNKIDIPYAASE-EELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKW 187 (193)
Q Consensus 109 ~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~ 187 (193)
.+..+ . ..+.|+++|+||+|+...... ..+.. ..... .......++.+||++|.|++++++.
T Consensus 209 ll~~L-~---~~g~pvIlVlNKiDlv~~~~~~~~il~-~~~~~------------l~lg~~~VV~iSA~~G~GvdeL~ea 271 (772)
T 3zvr_A 209 IAKEV-D---PQGQRTIGVITKLDLMDEGTDARDVLE-NKLLP------------LRRGYIGVVNRSQKDIDGKKDITAA 271 (772)
T ss_dssp HHHHH-C---TTCSSEEEEEECTTSSCTTCCSHHHHT-TCSSC------------CSSCEEECCCCCCEESSSSEEHHHH
T ss_pred HHHHH-H---hcCCCEEEEEeCcccCCcchhhHHHHH-HHhhh------------hhccCCceEEecccccccchhHHHH
Confidence 33333 2 247899999999999843321 12211 00000 0113467889999999999999998
Q ss_pred hhh
Q 029437 188 LSQ 190 (193)
Q Consensus 188 i~~ 190 (193)
|.+
T Consensus 272 I~~ 274 (772)
T 3zvr_A 272 LAA 274 (772)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 202
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.62 E-value=1.2e-16 Score=117.75 Aligned_cols=128 Identities=14% Similarity=0.037 Sum_probs=67.4
Q ss_pred EEEEEEEcCChhhhHhhH------HhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCC
Q 029437 64 IKFKAFDLGGHQIARRVW------KDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAA 137 (193)
Q Consensus 64 ~~~~~~D~~G~~~~~~~~------~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~ 137 (193)
..+.+|||||........ ...+.. +++++++|+....+..................+.|+++|+||+|+....
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~ 187 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE 187 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence 579999999987654321 124455 8889999875432222221111111100111368999999999997432
Q ss_pred CHHHHHHhhCC-CccccCC----Cccc--------cCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 138 SEEELRYHLGL-SNFTTGK----GKVN--------LADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 138 ~~~~~~~~~~~-~~~~~~~----~~~~--------~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
...++.+.+.. ....... .... +.+......+++++||++|.|+++++++|.+.+
T Consensus 188 ~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~ 255 (262)
T 1yrb_A 188 EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHY 255 (262)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred cHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHh
Confidence 22222221100 0000000 0000 000000123679999999999999999998764
No 203
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.60 E-value=1.5e-14 Score=120.03 Aligned_cols=121 Identities=19% Similarity=0.074 Sum_probs=85.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC--------------c-------cccCCCCCcceeEEEeC-------CEEEEEEEcCC
Q 029437 22 KILFLGLDNAGKTTLLHMLKDER--------------L-------VQHQPTQYPTSEELSIG-------KIKFKAFDLGG 73 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~~~--------------~-------~~~~~t~~~~~~~~~~~-------~~~~~~~D~~G 73 (193)
+|+|+|+.++|||||..+|+... + .....|+......+.|. ++.++++||||
T Consensus 15 Ni~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTPG 94 (709)
T 4fn5_A 15 NIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTPG 94 (709)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCCS
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCCC
Confidence 79999999999999999985211 0 01122444455556553 58999999999
Q ss_pred hhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCC---CHHHHHHhhC
Q 029437 74 HQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAA---SEEELRYHLG 147 (193)
Q Consensus 74 ~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~---~~~~~~~~~~ 147 (193)
|..|.......++-+|++|+|+|+.+.-.. +....|+..... ++|.++++||+|..... ..+++.+.++
T Consensus 95 HvDF~~Ev~~aLr~~DgavlvVDaveGV~~-qT~~v~~~a~~~----~lp~i~~iNKiDr~~a~~~~~~~ei~~~l~ 166 (709)
T 4fn5_A 95 HVDFTIEVERSLRVLDGAVVVFCGTSGVEP-QSETVWRQANKY----GVPRIVYVNKMDRQGANFLRVVEQIKKRLG 166 (709)
T ss_dssp CTTCHHHHHHHHHHCSEEEEEEETTTCSCH-HHHHHHHHHHHH----TCCEEEEEECSSSTTCCHHHHHHHHHHHHC
T ss_pred CcccHHHHHHHHHHhCeEEEEEECCCCCch-hHHHHHHHHHHc----CCCeEEEEccccccCccHHHHHHHhhhhcc
Confidence 999999888899999999999999876432 334455555443 89999999999997543 2334554444
No 204
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.59 E-value=2e-16 Score=118.79 Aligned_cols=131 Identities=15% Similarity=-0.003 Sum_probs=96.8
Q ss_pred HHHHHHhcCCcc-c-cCCCCCcceeEEEe-CCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChh-hHHHHHHHH
Q 029437 35 TLLHMLKDERLV-Q-HQPTQYPTSEELSI-GKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKE-RFAESKKEL 110 (193)
Q Consensus 35 sl~~~l~~~~~~-~-~~~t~~~~~~~~~~-~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~-~~~~~~~~~ 110 (193)
+|+.++..+.|. . +.||++.... ... .+..+.+||+ +++++.+...+++++|++++|+|++++. ++..+..|+
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l 108 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETGSGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFL 108 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSSSEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCCeEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHH
Confidence 577777777776 3 5678885443 332 2237899999 8888888889999999999999999987 677777877
Q ss_pred HHHHcCCCCCCCcEEEEEeCCCCCCCCCHH---HHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHh
Q 029437 111 DALLSDEALANVPFLVLGNKIDIPYAASEE---ELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKW 187 (193)
Q Consensus 111 ~~~~~~~~~~~~pviiv~nK~D~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~ 187 (193)
..+.. .++|+++|+||+|+.+....+ +..+.+. . . ..+++|||++|.|++++|++
T Consensus 109 ~~~~~----~~~piilv~NK~DL~~~~~v~~~~~~~~~~~--~---------------~-~~~~~~SAktg~gv~~lf~~ 166 (301)
T 1u0l_A 109 VLAEK----NELETVMVINKMDLYDEDDLRKVRELEEIYS--G---------------L-YPIVKTSAKTGMGIEELKEY 166 (301)
T ss_dssp HHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHT--T---------------T-SCEEECCTTTCTTHHHHHHH
T ss_pred HHHHH----CCCCEEEEEeHHHcCCchhHHHHHHHHHHHh--h---------------h-CcEEEEECCCCcCHHHHHHH
Confidence 76533 489999999999997432111 1222221 0 1 46899999999999999998
Q ss_pred hhh
Q 029437 188 LSQ 190 (193)
Q Consensus 188 i~~ 190 (193)
+..
T Consensus 167 l~g 169 (301)
T 1u0l_A 167 LKG 169 (301)
T ss_dssp HSS
T ss_pred hcC
Confidence 764
No 205
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.58 E-value=1.2e-15 Score=111.81 Aligned_cols=109 Identities=18% Similarity=0.198 Sum_probs=85.0
Q ss_pred cCChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHH---HHHcCCC-CCCCcEEEEEeC-CCCCCCCCHHHHHHh
Q 029437 71 LGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELD---ALLSDEA-LANVPFLVLGNK-IDIPYAASEEELRYH 145 (193)
Q Consensus 71 ~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~---~~~~~~~-~~~~pviiv~nK-~D~~~~~~~~~~~~~ 145 (193)
.+|+.+.+.++..++.++|++|||+|++|.+.+. ..+.+. .+++... ..+.|++|++|| .|++.+.+..++.+.
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~ 272 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE 272 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHH
Confidence 4678899999999999999999999999987543 222222 3333211 358999999997 699889999999999
Q ss_pred hCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhcC
Q 029437 146 LGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK 193 (193)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~~ 193 (193)
+++..+ .+.+.++.|||++|+|+.|.++||.+.++
T Consensus 273 L~L~~l-------------~r~W~Iq~csA~tGeGL~EGldWL~~~l~ 307 (312)
T 3l2o_B 273 LHLNLL-------------NHPWLVQDTEAETLTGFLNGIEWILEEVE 307 (312)
T ss_dssp TTGGGG-------------CSCEEEEEEETTTCTTHHHHHHHHHHHSC
T ss_pred cCCccC-------------CCcEEEEecccCCCcCHHHHHHHHHHHHH
Confidence 997662 14578999999999999999999998764
No 206
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.56 E-value=9.5e-16 Score=119.40 Aligned_cols=155 Identities=14% Similarity=0.152 Sum_probs=68.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcccc-C--------CCCCcceeEEEe--C--CEEEEEEEcCChhhh-------
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQH-Q--------PTQYPTSEELSI--G--KIKFKAFDLGGHQIA------- 77 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~--------~t~~~~~~~~~~--~--~~~~~~~D~~G~~~~------- 77 (193)
.-.++|+|+|++|||||||++++++..+... . ++.......+.. . ...+++||++|....
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~ 108 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 108 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence 3457899999999999999999998775321 1 111111111111 1 247899999997543
Q ss_pred Hhh-------HH-----------hhcccC--CEEEEEEECCChhhHHHHH-HHHHHHHcCCCCCCCcEEEEEeCCCCCCC
Q 029437 78 RRV-------WK-----------DYYAKV--DAVVYLVDAYDKERFAESK-KELDALLSDEALANVPFLVLGNKIDIPYA 136 (193)
Q Consensus 78 ~~~-------~~-----------~~~~~~--d~vl~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~pviiv~nK~D~~~~ 136 (193)
..+ .. ..+.++ |+++|+.+.+. .++.... .++..+ . .++|+|+|+||+|+...
T Consensus 109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~-~~L~~~d~~~lk~L-~----~~v~iIlVinK~Dll~~ 182 (418)
T 2qag_C 109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSG-HGLKPLDIEFMKRL-H----EKVNIIPLIAKADTLTP 182 (418)
T ss_dssp HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-C-CSCCHHHHHHHHHH-T----TTSEEEEEEESTTSSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcc-cCCCHHHHHHHHHH-h----ccCcEEEEEEcccCccH
Confidence 111 01 122333 44555554431 2233333 344444 2 37899999999999742
Q ss_pred CCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhh
Q 029437 137 ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQY 191 (193)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~ 191 (193)
.............. . ...++++++||+++.++++++..|...
T Consensus 183 ~ev~~~k~~i~~~~-~------------~~~i~~~~~sa~~~~~v~~~~~~l~~~ 224 (418)
T 2qag_C 183 EECQQFKKQIMKEI-Q------------EHKIKIYEFPETDDEEENKLVKKIKDR 224 (418)
T ss_dssp HHHHHHHHHHHHHH-H------------HHTCCCCCCC-----------------
T ss_pred HHHHHHHHHHHHHH-H------------HcCCeEEeCCCCCCcCHHHHHHHHHhh
Confidence 11111111111000 0 012446788888888888877776654
No 207
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.53 E-value=2.3e-14 Score=110.00 Aligned_cols=79 Identities=16% Similarity=0.227 Sum_probs=56.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc-ccC--CCCCcceeEEEe---------------------CCEEEEEEEcCChhh
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDERLV-QHQ--PTQYPTSEELSI---------------------GKIKFKAFDLGGHQI 76 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~~~-~~~--~t~~~~~~~~~~---------------------~~~~~~~~D~~G~~~ 76 (193)
++|+++|.||+|||||++++++.... ... .|..++...... ....+.+|||||...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 57999999999999999999876421 111 245555555433 235799999999765
Q ss_pred h-------HhhHHhhcccCCEEEEEEECCC
Q 029437 77 A-------RRVWKDYYAKVDAVVYLVDAYD 99 (193)
Q Consensus 77 ~-------~~~~~~~~~~~d~vl~v~d~~~ 99 (193)
. ...+...++.+|++++|+|+++
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 3 2233345789999999999975
No 208
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.51 E-value=3e-14 Score=108.50 Aligned_cols=153 Identities=14% Similarity=0.098 Sum_probs=87.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhc------CCcc--ccCCCC-------------------CcceeE-----------
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKD------ERLV--QHQPTQ-------------------YPTSEE----------- 58 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~------~~~~--~~~~t~-------------------~~~~~~----------- 58 (193)
......++++|++|||||||++.+.+ .+.. ...++. ......
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G 131 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGG 131 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccc
Confidence 34567899999999999999999973 2211 011100 000000
Q ss_pred -----------EEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEE
Q 029437 59 -----------LSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVL 127 (193)
Q Consensus 59 -----------~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv 127 (193)
+...+..+.++||+|...-.. .....+|.+++|+|....+..+.+... ....|.+++
T Consensus 132 ~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~i~~~---------i~~~~~ivv 199 (337)
T 2qm8_A 132 VAAKTRETMLLCEAAGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIKKG---------IFELADMIA 199 (337)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CCTT---------HHHHCSEEE
T ss_pred hHHHHHHHHHHHhcCCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHHHHHH---------HhccccEEE
Confidence 122567899999999753322 233679999999998654322111110 013456888
Q ss_pred EeCCCCCCCCCH-----HHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhh
Q 029437 128 GNKIDIPYAASE-----EELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQY 191 (193)
Q Consensus 128 ~nK~D~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~ 191 (193)
+||+|+...... .++...+.... . . ......+++.+||++|.|++++++.|.+.
T Consensus 200 lNK~Dl~~~~~~s~~~~~~l~~a~~l~~--~-~-------~~~~~~~vl~~Sal~g~gi~~L~~~I~~~ 258 (337)
T 2qm8_A 200 VNKADDGDGERRASAAASEYRAALHILT--P-P-------SATWTPPVVTISGLHGKGLDSLWSRIEDH 258 (337)
T ss_dssp EECCSTTCCHHHHHHHHHHHHHHHTTBC--C-S-------BTTBCCCEEEEBTTTTBSHHHHHHHHHHH
T ss_pred EEchhccCchhHHHHHHHHHHHHHHhcc--c-c-------ccCCCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence 899997532111 12222221111 0 0 00012457889999999999999998764
No 209
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.49 E-value=1.2e-16 Score=115.21 Aligned_cols=57 Identities=21% Similarity=0.285 Sum_probs=40.1
Q ss_pred CCcEEEEEeCCCCCCC--CCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437 121 NVPFLVLGNKIDIPYA--ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 121 ~~pviiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~ 192 (193)
..|.++++||+|+... ...++....+.... ...+++++||++|.|++++|++|.+.+
T Consensus 164 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~Sa~~g~gv~~l~~~l~~~~ 222 (226)
T 2hf9_A 164 KTADLIVINKIDLADAVGADIKKMENDAKRIN---------------PDAEVVLLSLKTMEGFDKVLEFIEKSV 222 (226)
T ss_dssp TTCSEEEEECGGGHHHHTCCHHHHHHHHHHHC---------------TTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred hcCCEEEEeccccCchhHHHHHHHHHHHHHhC---------------CCCeEEEEEecCCCCHHHHHHHHHHHH
Confidence 4678999999998632 33444433332111 235789999999999999999998754
No 210
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.39 E-value=5.7e-13 Score=102.70 Aligned_cols=88 Identities=19% Similarity=0.343 Sum_probs=55.7
Q ss_pred hCCCCCccEEEEEcCCCCCHHHHHHHHhcCCccc---cCCCCCcceeEEEeCC-----------------EEEEEEEcCC
Q 029437 14 LGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQ---HQPTQYPTSEELSIGK-----------------IKFKAFDLGG 73 (193)
Q Consensus 14 ~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~-----------------~~~~~~D~~G 73 (193)
.++.....+|+++|.||+|||||++++++..+.. ...|..++...+...+ ..+.+|||||
T Consensus 16 ~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpG 95 (396)
T 2ohf_A 16 IGRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAG 95 (396)
T ss_dssp CCCSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC
T ss_pred HhhccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCC
Confidence 3445667899999999999999999999876421 2235666666665542 3599999999
Q ss_pred hhhhHh-------hHHhhcccCCEEEEEEECCChh
Q 029437 74 HQIARR-------VWKDYYAKVDAVVYLVDAYDKE 101 (193)
Q Consensus 74 ~~~~~~-------~~~~~~~~~d~vl~v~d~~~~~ 101 (193)
...... .+...++.+|++++|+|+++.+
T Consensus 96 l~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~ 130 (396)
T 2ohf_A 96 LVKGAHNGQGLGNAFLSHISACDGIFHLTRAFEDD 130 (396)
T ss_dssp -----------CCHHHHHHHTSSSEEEEEEC----
T ss_pred cccccchhhHHHHHHHHHHHhcCeEEEEEecCCCc
Confidence 876443 4456678999999999997543
No 211
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.21 E-value=6.1e-12 Score=94.39 Aligned_cols=97 Identities=16% Similarity=0.059 Sum_probs=70.4
Q ss_pred hhhhHhhHHhhcccCCEEEEEEECCChh-hHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC---HHHHHHhhCCC
Q 029437 74 HQIARRVWKDYYAKVDAVVYLVDAYDKE-RFAESKKELDALLSDEALANVPFLVLGNKIDIPYAAS---EEELRYHLGLS 149 (193)
Q Consensus 74 ~~~~~~~~~~~~~~~d~vl~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~---~~~~~~~~~~~ 149 (193)
++++..+...++.++|.+++|+|++++. ++..+..|+..+.. .++|+++|+||+|+.+... .++..+.+..
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~----~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~- 140 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY----FKVEPVIVFNKIDLLNEEEKKELERWISIYRD- 140 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHH-
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEcccCCCccccHHHHHHHHHHHH-
Confidence 5555666667889999999999999886 78777788775533 5899999999999974321 1122221110
Q ss_pred ccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhh
Q 029437 150 NFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQY 191 (193)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~ 191 (193)
...+++++||++|.|++++++.+...
T Consensus 141 ----------------~g~~~~~~SA~~g~gi~~L~~~l~G~ 166 (302)
T 2yv5_A 141 ----------------AGYDVLKVSAKTGEGIDELVDYLEGF 166 (302)
T ss_dssp ----------------TTCEEEECCTTTCTTHHHHHHHTTTC
T ss_pred ----------------CCCeEEEEECCCCCCHHHHHhhccCc
Confidence 12478999999999999999987643
No 212
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.15 E-value=2e-10 Score=88.69 Aligned_cols=85 Identities=24% Similarity=0.356 Sum_probs=63.9
Q ss_pred CCCCCccEEEEEcCCCCCHHHHHHHHhcCCcc--ccCC--CCCcceeEEEeCC-----------------EEEEEEEcCC
Q 029437 15 GLWQKEAKILFLGLDNAGKTTLLHMLKDERLV--QHQP--TQYPTSEELSIGK-----------------IKFKAFDLGG 73 (193)
Q Consensus 15 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~--t~~~~~~~~~~~~-----------------~~~~~~D~~G 73 (193)
++.....+++++|++|||||||++++++.... ...| |..++...+...+ ..+.+||+||
T Consensus 15 g~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pG 94 (392)
T 1ni3_A 15 GRPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAG 94 (392)
T ss_dssp SSSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGG
T ss_pred ccccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccc
Confidence 34556789999999999999999999986642 2223 6677777777664 4689999999
Q ss_pred hhh-------hHhhHHhhcccCCEEEEEEECCC
Q 029437 74 HQI-------ARRVWKDYYAKVDAVVYLVDAYD 99 (193)
Q Consensus 74 ~~~-------~~~~~~~~~~~~d~vl~v~d~~~ 99 (193)
... ....+...+..+|++++|+|+.+
T Consensus 95 l~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 95 LTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp GCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 533 23344556688999999999863
No 213
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.14 E-value=1.1e-09 Score=87.08 Aligned_cols=161 Identities=17% Similarity=0.130 Sum_probs=90.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh------cCCccc-----cCCCC-----------Cccee-----------------EE
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLK------DERLVQ-----HQPTQ-----------YPTSE-----------------EL 59 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~------~~~~~~-----~~~t~-----------~~~~~-----------------~~ 59 (193)
....|+++|.+||||||+++.|. +....- ..+.. +.... ..
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 35589999999999999999997 332110 00000 00000 01
Q ss_pred EeCCEEEEEEEcCChhhhH----hhHHhh--cccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcE-EEEEeCCC
Q 029437 60 SIGKIKFKAFDLGGHQIAR----RVWKDY--YAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPF-LVLGNKID 132 (193)
Q Consensus 60 ~~~~~~~~~~D~~G~~~~~----~~~~~~--~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pv-iiv~nK~D 132 (193)
...+..+.++||||..... ...... ...+|.+++|+|+...... ......+ .. .+|+ .+|+||.|
T Consensus 180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~---~~~a~~~-~~----~~~i~gvVlNK~D 251 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQAC---EAQAKAF-KD----KVDVASVIVTKLD 251 (504)
T ss_dssp HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTH---HHHHHHH-HH----HHCCCCEEEECTT
T ss_pred HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccH---HHHHHHH-Hh----hcCceEEEEeCCc
Confidence 1256789999999965321 111111 2268999999999775331 1222222 11 2564 89999999
Q ss_pred CCCCCC-HHHHHHhhCCCc--cccCCCccccCCCCCcceEEEEeeeecCCC-hhhHHHhhhhh
Q 029437 133 IPYAAS-EEELRYHLGLSN--FTTGKGKVNLADSNVRPLEVFMCSIVRKMG-YGDGFKWLSQY 191 (193)
Q Consensus 133 ~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g-v~el~~~i~~~ 191 (193)
...... .-.+...++.+. +......+.+ ....+...+|+..|.| +.++++++.+.
T Consensus 252 ~~~~~g~~l~~~~~~g~PI~fig~ge~~~dl----~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 252 GHAKGGGALSAVAATKSPIIFIGTGEHIDDF----EPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp SCCCCTHHHHHHHHHCCCEEEEECSSSTTCE----ECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred cccchHHHHHHHHHhCCCeEEeccccchhhh----hccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 874433 223445555433 1111111100 0112345689999999 99999998754
No 214
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.99 E-value=2.8e-09 Score=78.61 Aligned_cols=111 Identities=20% Similarity=0.227 Sum_probs=61.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccccC----------CCCCcceeEEEeC----CEEEEEEEcCChhh---------
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKDERLVQHQ----------PTQYPTSEELSIG----KIKFKAFDLGGHQI--------- 76 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~----------~t~~~~~~~~~~~----~~~~~~~D~~G~~~--------- 76 (193)
+++++|+|++|||||||++.+.+...+... .+........... ...++++|++|...
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 478999999999999999999865432110 0111111111111 13689999998321
Q ss_pred -hHh--------hHHhh----------cccCCEEEEEEECC-ChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC
Q 029437 77 -ARR--------VWKDY----------YAKVDAVVYLVDAY-DKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA 136 (193)
Q Consensus 77 -~~~--------~~~~~----------~~~~d~vl~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~ 136 (193)
... ..... +..+++.++++|-. .+-+-. ..+.+..+ .. ..++|+++||.|....
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~l-D~~~l~~L-~~----~~~vI~Vi~K~D~lt~ 155 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPL-DLEFMKHL-SK----VVNIIPVIAKADTMTL 155 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHH-HHHHHHHH-HT----TSEEEEEETTGGGSCH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHH-HHHHHHHH-Hh----cCcEEEEEeccccCCH
Confidence 111 00111 22568899999964 221111 12333333 22 3899999999998743
No 215
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.97 E-value=3.4e-11 Score=92.69 Aligned_cols=124 Identities=15% Similarity=0.136 Sum_probs=70.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC-----CccccCCCCCcc--eeEEEeCCEEEEEEEcCChhhhH--------hhHHhh
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKDE-----RLVQHQPTQYPT--SEELSIGKIKFKAFDLGGHQIAR--------RVWKDY 84 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~~-----~~~~~~~t~~~~--~~~~~~~~~~~~~~D~~G~~~~~--------~~~~~~ 84 (193)
..+++++|.+|+|||||+|++.+. ......+..+.+ ........ .+.++||||..... ......
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~-~~~liDtPG~~~~~~~~~~l~~~~l~~~ 240 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLES-GATLYDTPGIINHHQMAHFVDARDLKII 240 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECST-TCEEEECCSCCCCSSGGGGSCTTTHHHH
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCC-CeEEEeCCCcCcHHHHHHHHhHHHHHHH
Confidence 458999999999999999999876 222111111222 22222222 37899999953221 112222
Q ss_pred c--ccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCC----CHHHHHHhhCCC
Q 029437 85 Y--AKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAA----SEEELRYHLGLS 149 (193)
Q Consensus 85 ~--~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~----~~~~~~~~~~~~ 149 (193)
+ ...+.++++++....-.+..+.. ++.....+.|+++++||.|..... ..+.+.+.++..
T Consensus 241 ~~~~~i~~~~~~l~~~~~~~~g~l~~-----l~~l~~~~~~~~~v~~k~d~~~~~~~~~~~~~~~~~~g~~ 306 (369)
T 3ec1_A 241 TPKREIHPRVYQLNEGQTLFFGGLAR-----LDYIKGGRRSFVCYMANELTVHRTKLEKADSLYANQLGEL 306 (369)
T ss_dssp SCSSCCCCEEEEECTTEEEEETTTEE-----EEEEESSSEEEEEEECTTSCEEEEEGGGHHHHHHHHBTTT
T ss_pred hcccccCceEEEEcCCceEEECCEEE-----EEEccCCCceEEEEecCCcccccccHHHHHHHHHHhcCCc
Confidence 2 57899999999843210000100 122223578999999999987322 223355566543
No 216
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.92 E-value=1.3e-08 Score=79.11 Aligned_cols=160 Identities=13% Similarity=0.131 Sum_probs=84.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccccC-CCC-Cc----ceeEEEeCC-EEEEEEEcCChhh----hHhhHH-hhccc
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKDERLVQHQ-PTQ-YP----TSEELSIGK-IKFKAFDLGGHQI----ARRVWK-DYYAK 87 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~-~t~-~~----~~~~~~~~~-~~~~~~D~~G~~~----~~~~~~-~~~~~ 87 (193)
...++|+|++|||||||+|.+.+....... .+. +. ......... -.++++|++|... ...... ..+..
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~ 148 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYE 148 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGG
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCc
Confidence 348999999999999999999885322110 000 00 001111111 2578999998532 122222 12344
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCC---------CCCCHHHHHHhhCCCccccCCCcc
Q 029437 88 VDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIP---------YAASEEELRYHLGLSNFTTGKGKV 158 (193)
Q Consensus 88 ~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~---------~~~~~~~~~~~~~~~~~~~~~~~~ 158 (193)
.+..++ ++..... .+-......+.. .+.|++++.||.|+. +.....++.+.+.......
T Consensus 149 ~~~~~~-lS~G~~~--kqrv~la~aL~~----~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~----- 216 (413)
T 1tq4_A 149 YDFFII-ISATRFK--KNDIDIAKAISM----MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNT----- 216 (413)
T ss_dssp CSEEEE-EESSCCC--HHHHHHHHHHHH----TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHH-----
T ss_pred cCCeEE-eCCCCcc--HHHHHHHHHHHh----cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHH-----
Confidence 466555 7775221 112223333332 378999999999975 2223333333222110000
Q ss_pred ccCCCCCcceEEEEeee--ecCCChhhHHHhhhhhc
Q 029437 159 NLADSNVRPLEVFMCSI--VRKMGYGDGFKWLSQYI 192 (193)
Q Consensus 159 ~~~~~~~~~~~~~~~Sa--~~g~gv~el~~~i~~~~ 192 (193)
+.+.......++.+|+ .++.|++++.+.|.+.+
T Consensus 217 -l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~L 251 (413)
T 1tq4_A 217 -FRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDL 251 (413)
T ss_dssp -HHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHS
T ss_pred -HHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhC
Confidence 0000001235788999 67778999999987655
No 217
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.91 E-value=3.4e-09 Score=82.53 Aligned_cols=110 Identities=13% Similarity=0.122 Sum_probs=58.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccccCC---CCCcce--eEEEeC--C--EEEEEEEcCChhh---------------
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDERLVQHQP---TQYPTS--EELSIG--K--IKFKAFDLGGHQI--------------- 76 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~---t~~~~~--~~~~~~--~--~~~~~~D~~G~~~--------------- 76 (193)
++++|+|++|||||||++.+.+..+..... +..... ..+... . ..++++|++|...
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i 122 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFI 122 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHH
Confidence 459999999999999999999875432111 111111 111111 1 3689999987421
Q ss_pred ---hHhhHHhhc---------cc--CCE-EEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC
Q 029437 77 ---ARRVWKDYY---------AK--VDA-VVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA 136 (193)
Q Consensus 77 ---~~~~~~~~~---------~~--~d~-vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~ 136 (193)
+...+.... .. +|+ ++++.|...+-+ ..+..+...+ . .++|+|+|+||+|....
T Consensus 123 ~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~--~~Dieilk~L---~-~~~~vI~Vi~KtD~Lt~ 191 (427)
T 2qag_B 123 DAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLK--SLDLVTMKKL---D-SKVNIIPIIAKADAISK 191 (427)
T ss_dssp HHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---C--HHHHHHHHHT---C-SCSEEEEEESCGGGSCH
T ss_pred HHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCC--HHHHHHHHHH---h-hCCCEEEEEcchhccch
Confidence 111112111 11 234 555666654422 2222222222 2 58899999999998743
No 218
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.89 E-value=1.5e-09 Score=80.50 Aligned_cols=100 Identities=23% Similarity=0.182 Sum_probs=65.2
Q ss_pred EEEcCChh-hhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhh
Q 029437 68 AFDLGGHQ-IARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHL 146 (193)
Q Consensus 68 ~~D~~G~~-~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~ 146 (193)
+-..||+. .....+...+..+|+++.|+|+.++.+..+ ..+..++ .++|+++++||+|+.+....+...+.+
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~--~~l~~~l-----~~kp~ilVlNK~DL~~~~~~~~~~~~~ 75 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRN--PMIEDIL-----KNKPRIMLLNKADKADAAVTQQWKEHF 75 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSC--HHHHHHC-----SSSCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCC--HHHHHHH-----CCCCEEEEEECcccCCHHHHHHHHHHH
Confidence 34578876 455666778899999999999999866432 1222332 478999999999997522222233333
Q ss_pred CCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhh
Q 029437 147 GLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQY 191 (193)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~ 191 (193)
.. ...+++.+||++|.|++++++.|.+.
T Consensus 76 ~~-----------------~g~~~i~iSA~~~~gi~~L~~~i~~~ 103 (282)
T 1puj_A 76 EN-----------------QGIRSLSINSVNGQGLNQIVPASKEI 103 (282)
T ss_dssp HT-----------------TTCCEEECCTTTCTTGGGHHHHHHHH
T ss_pred Hh-----------------cCCcEEEEECCCcccHHHHHHHHHHH
Confidence 11 11357899999999999999887654
No 219
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.88 E-value=5e-09 Score=80.59 Aligned_cols=102 Identities=20% Similarity=0.251 Sum_probs=66.5
Q ss_pred ChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCC-CHHHHHHhhCCCcc
Q 029437 73 GHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAA-SEEELRYHLGLSNF 151 (193)
Q Consensus 73 G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~-~~~~~~~~~~~~~~ 151 (193)
..++|+..+.++.+.++++++|+|++++.. .....+..++ .+.|+++|+||+|+.+.. ..+++.+.+.....
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~~--~~~~~l~~~~-----~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~ 127 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFNG--SWLPGLHRFV-----GNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAK 127 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHHH--HCCTTHHHHS-----SSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCcc--cHHHHHHHHh-----CCCcEEEEEEChhcCCcccCHHHHHHHHHHHHH
Confidence 456788888888889999999999998741 2222223331 378999999999997543 22333222110000
Q ss_pred ccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhh
Q 029437 152 TTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQY 191 (193)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~ 191 (193)
. ......+++.+||++|.|+++++++|.+.
T Consensus 128 -~---------~g~~~~~v~~iSA~~g~gi~~L~~~l~~~ 157 (368)
T 3h2y_A 128 -Q---------LGLKPEDVFLISAAKGQGIAELADAIEYY 157 (368)
T ss_dssp -H---------TTCCCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred -H---------cCCCcccEEEEeCCCCcCHHHHHhhhhhh
Confidence 0 00011368999999999999999999653
No 220
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.85 E-value=3.6e-10 Score=86.97 Aligned_cols=111 Identities=12% Similarity=0.112 Sum_probs=64.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC------ccccCCCCCcc--eeEEEeCCEEEEEEEcCChhhhH--------hhHHh
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKDER------LVQHQPTQYPT--SEELSIGKIKFKAFDLGGHQIAR--------RVWKD 83 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~~~------~~~~~~t~~~~--~~~~~~~~~~~~~~D~~G~~~~~--------~~~~~ 83 (193)
..+++++|.+|+|||||+|++.+.. .....+..+.+ ...+.... .+.++||||..... .....
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~-~~~liDtPG~~~~~~~~~~l~~~~l~~ 238 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDE-ESSLYDTPGIINHHQMAHYVGKQSLKL 238 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSS-SCEEEECCCBCCTTSGGGGSCHHHHHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecC-CeEEEeCCCcCcHHHHHHHhhHHHHHH
Confidence 3689999999999999999998753 11111112211 22222222 37899999953221 11222
Q ss_pred h--cccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC
Q 029437 84 Y--YAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA 136 (193)
Q Consensus 84 ~--~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~ 136 (193)
. ....+.++++++.........+.. ++.....+.|+++++||.|....
T Consensus 239 ~~~~~~i~~~~~~l~~~~~~~~g~l~~-----~d~l~~~~~~~~~v~nk~d~~~~ 288 (368)
T 3h2y_A 239 ITPTKEIKPMVFQLNEEQTLFFSGLAR-----FDYVSGGRRAFTCHFSNRLTIHR 288 (368)
T ss_dssp HSCSSCCCCEEEEECTTEEEEETTTEE-----EEEEESSSEEEEEEECTTSCEEE
T ss_pred hccccccCceEEEEcCCCEEEEcceEE-----EEEecCCCceEEEEecCcccccc
Confidence 2 256788899998732210111000 11222347899999999998743
No 221
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.79 E-value=3.2e-09 Score=83.20 Aligned_cols=162 Identities=16% Similarity=0.127 Sum_probs=88.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC------cc--c---c----------------------C-CCCCcc-e--eEE-EeC
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDER------LV--Q---H----------------------Q-PTQYPT-S--EEL-SIG 62 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~------~~--~---~----------------------~-~t~~~~-~--~~~-~~~ 62 (193)
..|+++|++|+||||++..+...- .. . . . .+.++. . ..+ ...
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~~ 179 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKFK 179 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTTS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHhh
Confidence 579999999999999999985421 00 0 0 0 011110 0 000 125
Q ss_pred CEEEEEEEcCChhhhHh-h---HHh--hcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCC-c-EEEEEeCCCCC
Q 029437 63 KIKFKAFDLGGHQIARR-V---WKD--YYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANV-P-FLVLGNKIDIP 134 (193)
Q Consensus 63 ~~~~~~~D~~G~~~~~~-~---~~~--~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-p-viiv~nK~D~~ 134 (193)
+..+.++||||...... . ... .+..+|.+++|+|+..... .......+ + ... | ..+++||.|..
T Consensus 180 ~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~-~----~~~~~i~gvVlnK~D~~ 251 (432)
T 2v3c_C 180 KADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAF-K----EAVGEIGSIIVTKLDGS 251 (432)
T ss_dssp SCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHH-H----TTSCSCEEEEEECSSSC
T ss_pred CCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHH-h----hcccCCeEEEEeCCCCc
Confidence 67899999999653211 1 111 1236899999999866532 22222222 2 134 5 78999999986
Q ss_pred CCCC-HHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCC-hhhHHHhhhhhc
Q 029437 135 YAAS-EEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMG-YGDGFKWLSQYI 192 (193)
Q Consensus 135 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g-v~el~~~i~~~~ 192 (193)
.... ...+....+.+..--..+ +.+. ......+...+|+..|.| +..+++.+.+.+
T Consensus 252 ~~~g~~l~~~~~~~~pi~~ig~G-e~~~-dl~~f~~~~~~s~l~g~gdi~~L~e~~~~~~ 309 (432)
T 2v3c_C 252 AKGGGALSAVAETKAPIKFIGIG-EGID-DLEPFDPKKFISRLLGMGDLESLLEKAEDMV 309 (432)
T ss_dssp STTHHHHHHHHHSSCCEEEECCS-SSSS-SCCBCCHHHHHHHHTCSSCSSTTSSTTTSCS
T ss_pred cchHHHHHHHHHHCCCEEEeecC-cccc-ccccCCHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 3221 223444444333211110 1111 111223445689999999 988888876543
No 222
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.77 E-value=5e-09 Score=80.67 Aligned_cols=102 Identities=19% Similarity=0.246 Sum_probs=66.7
Q ss_pred ChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCC-CHHHHHHhhCCCcc
Q 029437 73 GHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAA-SEEELRYHLGLSNF 151 (193)
Q Consensus 73 G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~-~~~~~~~~~~~~~~ 151 (193)
.++.|+..+.++...++++++|+|++++.+ .....+...+ .+.|+++|+||+|+.+.. ..+++.+.+....
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~--s~~~~l~~~l-----~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~- 128 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG--SFIPGLPRFA-----ADNPILLVGNKADLLPRSVKYPKLLRWMRRMA- 128 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG--GCCSSHHHHC-----TTSCEEEEEECGGGSCTTCCHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC--chhhHHHHHh-----CCCCEEEEEEChhcCCCccCHHHHHHHHHHHH-
Confidence 477888888888899999999999999763 1112222221 378999999999997543 2333322211100
Q ss_pred ccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhh
Q 029437 152 TTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQY 191 (193)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~ 191 (193)
. +......+++.+||++|.|++++++.|.+.
T Consensus 129 ~---------~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~ 159 (369)
T 3ec1_A 129 E---------ELGLCPVDVCLVSAAKGIGMAKVMEAINRY 159 (369)
T ss_dssp H---------TTTCCCSEEEECBTTTTBTHHHHHHHHHHH
T ss_pred H---------HcCCCcccEEEEECCCCCCHHHHHHHHHhh
Confidence 0 000012368999999999999999999753
No 223
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.74 E-value=1.4e-08 Score=75.36 Aligned_cols=58 Identities=21% Similarity=0.359 Sum_probs=37.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcce--eEEEeCCEEEEEEEcCChh
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTS--EELSIGKIKFKAFDLGGHQ 75 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~D~~G~~ 75 (193)
....++++++|.||+|||||+|++.+.......+..+.+. ..+..+ ..+.++||||..
T Consensus 117 ~~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~-~~~~l~DtpG~~ 176 (282)
T 1puj_A 117 KPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVG-KELELLDTPGIL 176 (282)
T ss_dssp CCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEET-TTEEEEECCCCC
T ss_pred CCCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEeC-CCEEEEECcCcC
Confidence 3466899999999999999999999876443332222111 122232 368899999953
No 224
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.71 E-value=7.6e-09 Score=75.97 Aligned_cols=54 Identities=28% Similarity=0.380 Sum_probs=34.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcce--eEEEeCCEEEEEEEcCChh
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTS--EELSIGKIKFKAFDLGGHQ 75 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~D~~G~~ 75 (193)
++++++|.+|+|||||+|++.+.......++.+.+. ..+.. +..+.+|||||..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtpG~~ 155 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSL-ENGVKILDTPGIL 155 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEEC-TTSCEEESSCEEC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEe-CCCEEEEECCCcc
Confidence 699999999999999999999877654433333221 12222 2468999999965
No 225
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.56 E-value=1.8e-07 Score=73.18 Aligned_cols=110 Identities=15% Similarity=0.133 Sum_probs=61.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc------CCcc-----ccCC-----------CCCccee-----------------EE
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKD------ERLV-----QHQP-----------TQYPTSE-----------------EL 59 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~------~~~~-----~~~~-----------t~~~~~~-----------------~~ 59 (193)
+...|+++|++|+||||++..+.. .... ...+ ..+.... ..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 356899999999999999988852 1110 0000 0000000 00
Q ss_pred EeCCEEEEEEEcCChhhh-----HhhHH-hhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCC
Q 029437 60 SIGKIKFKAFDLGGHQIA-----RRVWK-DYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDI 133 (193)
Q Consensus 60 ~~~~~~~~~~D~~G~~~~-----~~~~~-~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~ 133 (193)
...+.++.++||+|-... ..+.. .....+|.+++|+|+...... ......+... -.+..+|+||.|.
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a---~~~a~~f~~~----~~i~gVIlTKlD~ 251 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQA---YNQALAFKEA----TPIGSIIVTKLDG 251 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH---HHHHHHHHHS----CTTEEEEEECCSS
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhH---HHHHHHHHhh----CCCeEEEEECCCC
Confidence 112478999999994221 11111 112357999999999765332 2222333221 2345799999998
Q ss_pred CC
Q 029437 134 PY 135 (193)
Q Consensus 134 ~~ 135 (193)
..
T Consensus 252 ~~ 253 (443)
T 3dm5_A 252 SA 253 (443)
T ss_dssp CS
T ss_pred cc
Confidence 63
No 226
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.52 E-value=2.2e-07 Score=76.02 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDER 44 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~ 44 (193)
..++|+|++|||||||++.+.+..
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSCC
T ss_pred CeEEEECCCCChHHHHHHHHhCCC
Confidence 359999999999999999998874
No 227
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.47 E-value=4.5e-07 Score=73.50 Aligned_cols=59 Identities=19% Similarity=0.113 Sum_probs=41.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCC-CCCcceeEEEe-------CCEEEEEEEcCChh
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLV-QHQP-TQYPTSEELSI-------GKIKFKAFDLGGHQ 75 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~-t~~~~~~~~~~-------~~~~~~~~D~~G~~ 75 (193)
.....+|+|+|.||+|||||+|++.+.... .... +.+.+.....+ .+..+.++||||..
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~ 102 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG 102 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcC
Confidence 345688999999999999999999987632 2222 22333333222 45789999999964
No 228
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.45 E-value=2.3e-08 Score=73.37 Aligned_cols=94 Identities=20% Similarity=0.077 Sum_probs=59.3
Q ss_pred cCChhh-hHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCC
Q 029437 71 LGGHQI-ARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLS 149 (193)
Q Consensus 71 ~~G~~~-~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~ 149 (193)
.|||.. ....+...+..+|+++.|+|+.++.+..+.. +. + . ++|.++++||+|+.+....++..+.+...
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-l-----l-~k~~iivlNK~DL~~~~~~~~~~~~~~~~ 74 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD-F-----S-RKETIILLNKVDIADEKTTKKWVEFFKKQ 74 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-C-----T-TSEEEEEEECGGGSCHHHHHHHHHHHHHT
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-h-----c-CCCcEEEEECccCCCHHHHHHHHHHHHHc
Confidence 466653 3345566779999999999999886543210 11 1 1 88999999999997532222223322111
Q ss_pred ccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhh
Q 029437 150 NFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQY 191 (193)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~ 191 (193)
..++ .+||++|.|+++++++|...
T Consensus 75 -----------------g~~v-~iSa~~~~gi~~L~~~l~~~ 98 (262)
T 3cnl_A 75 -----------------GKRV-ITTHKGEPRKVLLKKLSFDR 98 (262)
T ss_dssp -----------------TCCE-EECCTTSCHHHHHHHHCCCT
T ss_pred -----------------CCeE-EEECCCCcCHHHHHHHHHHh
Confidence 1235 89999999999999988754
No 229
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.24 E-value=5.8e-07 Score=67.25 Aligned_cols=86 Identities=13% Similarity=0.050 Sum_probs=57.1
Q ss_pred hhcccCCEEEEEEECCChhh-HHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC----HHHHHHhhCCCccccCCCc
Q 029437 83 DYYAKVDAVVYLVDAYDKER-FAESKKELDALLSDEALANVPFLVLGNKIDIPYAAS----EEELRYHLGLSNFTTGKGK 157 (193)
Q Consensus 83 ~~~~~~d~vl~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~----~~~~~~~~~~~~~~~~~~~ 157 (193)
..+.++|.+++|+|+.+|.. ...+.+++.... ..++|.++|+||+|+.+... ..++.+.+..
T Consensus 82 ~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~----~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~--------- 148 (307)
T 1t9h_A 82 PPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE----ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRN--------- 148 (307)
T ss_dssp TTEECCCEEEEEEESTTTTCCHHHHHHHHHHHH----TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHH---------
T ss_pred HHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHH----HCCCCEEEEEECCccCchhhhHHHHHHHHHHHHh---------
Confidence 35689999999999987643 333334333332 24889999999999985432 2233333311
Q ss_pred cccCCCCCcceEEEEeeeecCCChhhHHHhhh
Q 029437 158 VNLADSNVRPLEVFMCSIVRKMGYGDGFKWLS 189 (193)
Q Consensus 158 ~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~ 189 (193)
...+++.+||.+|.|++++++.+.
T Consensus 149 --------~g~~v~~~sa~~~~g~~~L~~~~~ 172 (307)
T 1t9h_A 149 --------IGYDVYLTSSKDQDSLADIIPHFQ 172 (307)
T ss_dssp --------HTCCEEECCHHHHTTCTTTGGGGT
T ss_pred --------CCCeEEEEecCCCCCHHHHHhhcC
Confidence 113578899999999998887653
No 230
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.24 E-value=2.8e-06 Score=66.48 Aligned_cols=108 Identities=19% Similarity=0.124 Sum_probs=60.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc------CCcc-----ccCC-----------CCCccee-----------------EEE
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKD------ERLV-----QHQP-----------TQYPTSE-----------------ELS 60 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~------~~~~-----~~~~-----------t~~~~~~-----------------~~~ 60 (193)
...|+++|++||||||++..+.. .... ...+ ..+.... ...
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~ 176 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFV 176 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHH
Confidence 56799999999999999988851 1110 0000 0000000 011
Q ss_pred eCCEEEEEEEcCChhh------hHhhHHh--hcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCC
Q 029437 61 IGKIKFKAFDLGGHQI------ARRVWKD--YYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKID 132 (193)
Q Consensus 61 ~~~~~~~~~D~~G~~~------~~~~~~~--~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D 132 (193)
..+..+.++||||... ....... .....+.+++|+|+.......+....+.+. -.+..+++||.|
T Consensus 177 ~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~~~-------~~~~gVIlTKlD 249 (433)
T 3kl4_A 177 KNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFHQA-------SPIGSVIITKMD 249 (433)
T ss_dssp TTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHHHH-------CSSEEEEEECGG
T ss_pred hcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHhcc-------cCCcEEEEeccc
Confidence 1356789999999432 1111111 112568999999997653322222222222 235679999999
Q ss_pred CC
Q 029437 133 IP 134 (193)
Q Consensus 133 ~~ 134 (193)
..
T Consensus 250 ~~ 251 (433)
T 3kl4_A 250 GT 251 (433)
T ss_dssp GC
T ss_pred cc
Confidence 86
No 231
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.98 E-value=5.9e-05 Score=56.23 Aligned_cols=65 Identities=15% Similarity=0.092 Sum_probs=40.4
Q ss_pred CCEEEEEEEcCChhh--hHh-hHH-----hhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCc-EEEEEeCCC
Q 029437 62 GKIKFKAFDLGGHQI--ARR-VWK-----DYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVP-FLVLGNKID 132 (193)
Q Consensus 62 ~~~~~~~~D~~G~~~--~~~-~~~-----~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~D 132 (193)
.++.+.++||||... ... +.. .....+|.+++|+|+.... +.......+.. ..| ..+++||.|
T Consensus 179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~~-----~~~i~gvVlnk~D 250 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYDLASKFNQ-----ASKIGTIIITKMD 250 (297)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHH-----TCTTEEEEEECGG
T ss_pred CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHHHHHHHHh-----hCCCCEEEEeCCC
Confidence 457899999999765 321 221 1234689999999986432 22222333311 345 678999999
Q ss_pred CC
Q 029437 133 IP 134 (193)
Q Consensus 133 ~~ 134 (193)
..
T Consensus 251 ~~ 252 (297)
T 1j8m_F 251 GT 252 (297)
T ss_dssp GC
T ss_pred CC
Confidence 86
No 232
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.98 E-value=1.1e-06 Score=69.76 Aligned_cols=84 Identities=18% Similarity=0.158 Sum_probs=50.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEE----EeCCEEEEEEEcCChhh--hHhhH--------Hh
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEEL----SIGKIKFKAFDLGGHQI--ARRVW--------KD 83 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~----~~~~~~~~~~D~~G~~~--~~~~~--------~~ 83 (193)
.....|+++|.+||||||+.++|.........++...+...+ ........+||..|... .+... ..
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~ 116 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRK 116 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 355789999999999999999987543221112211110000 01113346789988733 23322 44
Q ss_pred hcccCCEEEEEEECCChh
Q 029437 84 YYAKVDAVVYLVDAYDKE 101 (193)
Q Consensus 84 ~~~~~d~vl~v~d~~~~~ 101 (193)
++...++.++|+|.++..
T Consensus 117 ~l~~~~G~~vV~D~tn~~ 134 (469)
T 1bif_A 117 FLSEEGGHVAVFDATNTT 134 (469)
T ss_dssp HHHTTCCSEEEEESCCCS
T ss_pred HHHhCCCCEEEEeCCCCC
Confidence 455678889999998873
No 233
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.93 E-value=8.7e-06 Score=57.09 Aligned_cols=41 Identities=17% Similarity=0.166 Sum_probs=29.3
Q ss_pred chHHHHHHHHHhhCCCCCccEEEEEcCCCCCHHHHHHHHhc
Q 029437 2 FLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~ 42 (193)
.++.|+..+..+.+...+.-.+++.||||+|||+++.++..
T Consensus 40 ~~~~f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 40 EFITFLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp CHHHHHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHH
Confidence 34555555555555444445699999999999999988764
No 234
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.88 E-value=1.7e-05 Score=60.51 Aligned_cols=83 Identities=20% Similarity=0.069 Sum_probs=52.1
Q ss_pred hcccCCEEEEEEECCChh-hHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC---HHHHHHhhCCCccccCCCccc
Q 029437 84 YYAKVDAVVYLVDAYDKE-RFAESKKELDALLSDEALANVPFLVLGNKIDIPYAAS---EEELRYHLGLSNFTTGKGKVN 159 (193)
Q Consensus 84 ~~~~~d~vl~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 159 (193)
...++|.+++|... +|. +...+.+++..... .++|+++|+||+|+.+... .+++...+..
T Consensus 127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~----~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~----------- 190 (358)
T 2rcn_A 127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCET----LQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRN----------- 190 (358)
T ss_dssp EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHH----HTCEEEEEEECGGGCCHHHHHHHHHHHHHHHT-----------
T ss_pred HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHh----cCCCEEEEEECccCCCchhHHHHHHHHHHHHh-----------
Confidence 35789999988665 453 23334444433211 3788899999999975322 1123333221
Q ss_pred cCCCCCcceEEEEeeeecCCChhhHHHhh
Q 029437 160 LADSNVRPLEVFMCSIVRKMGYGDGFKWL 188 (193)
Q Consensus 160 ~~~~~~~~~~~~~~Sa~~g~gv~el~~~i 188 (193)
...+++.+||.+|.|++++...+
T Consensus 191 ------~G~~v~~~Sa~~~~gl~~L~~~~ 213 (358)
T 2rcn_A 191 ------IGYRVLMVSSHTQDGLKPLEEAL 213 (358)
T ss_dssp ------TTCCEEECBTTTTBTHHHHHHHH
T ss_pred ------CCCcEEEEecCCCcCHHHHHHhc
Confidence 12357899999999999887654
No 235
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.86 E-value=8.6e-06 Score=56.15 Aligned_cols=22 Identities=36% Similarity=0.566 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 029437 22 KILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~~ 43 (193)
+++++|++|||||||++.+.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998754
No 236
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.81 E-value=5e-05 Score=52.08 Aligned_cols=108 Identities=14% Similarity=0.056 Sum_probs=48.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhh----cccCCEEEEEEE
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDY----YAKVDAVVYLVD 96 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~----~~~~d~vl~v~d 96 (193)
..++|+|++|||||||++++...- . ..+.....+......+ -+|.+|.+.++-....+ +.......++.+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l-~----~~g~~v~~i~~~~~~~-~id~~g~Ds~~~~~~G~~~v~i~~~~~~~~~~~ 80 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL-C----ARGIRPGLIKHTHHDM-DVDKPGKDSYELRKAGAAQTIVASQQRWALMTE 80 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH-H----HTTCCEEEEEECCC-------------CHHHHTCSEEEEECSSEEEEEEE
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc-c----ccCCceeEEeeCCCcc-ccCCCCCceEEEEeCCcceeecccchhheeeee
Confidence 468999999999999999987642 1 1122333444443332 24566654332111111 111122233333
Q ss_pred C--CChhhHHHHHHHHHH------HHcCCCCCCCcEEEEEeCCCCC
Q 029437 97 A--YDKERFAESKKELDA------LLSDEALANVPFLVLGNKIDIP 134 (193)
Q Consensus 97 ~--~~~~~~~~~~~~~~~------~~~~~~~~~~pviiv~nK~D~~ 134 (193)
. ..+..+..+...+.. +++.......|.+++.+|.+-.
T Consensus 81 ~~~~~~~~L~~ll~r~~~~~~D~ilIEg~k~~~~pki~v~~~~~~~ 126 (174)
T 1np6_A 81 TPDEEELDLQFLASRMDTSKLDLILVEGFKHEEIAKIVLFRDGAGH 126 (174)
T ss_dssp CSSSCCCCHHHHHHHSCGGGCSEEEEESCSSCCSEEEEEECTTSSC
T ss_pred ccCCchhhHHHHHHhcCCCcchHHHHHHHhhcCCCEEEEEecccCC
Confidence 2 112334444433221 1222344578999999988753
No 237
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.79 E-value=7.2e-05 Score=58.67 Aligned_cols=80 Identities=15% Similarity=0.110 Sum_probs=44.4
Q ss_pred CCEEEEEEEcCChhhhH-hhHH-----hhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCc-EEEEEeCCCCC
Q 029437 62 GKIKFKAFDLGGHQIAR-RVWK-----DYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVP-FLVLGNKIDIP 134 (193)
Q Consensus 62 ~~~~~~~~D~~G~~~~~-~~~~-----~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~D~~ 134 (193)
.++.+.++||||..... .... ..+..++.+++|+|+...... ......+ . ...+ .-+++||.|..
T Consensus 182 ~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~---~~~~~~f-~----~~l~i~gvVlnK~D~~ 253 (433)
T 2xxa_A 182 KFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDA---ANTAKAF-N----EALPLTGVVLTKVDGD 253 (433)
T ss_dssp TTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTH---HHHHHHH-H----HHSCCCCEEEECTTSS
T ss_pred CCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHH---HHHHHHH-h----ccCCCeEEEEecCCCC
Confidence 45789999999954321 1111 123468999999999754322 2222222 1 1233 24799999986
Q ss_pred CCC-CHHHHHHhhCCC
Q 029437 135 YAA-SEEELRYHLGLS 149 (193)
Q Consensus 135 ~~~-~~~~~~~~~~~~ 149 (193)
... ....+....+.+
T Consensus 254 ~~~g~~l~i~~~~~~P 269 (433)
T 2xxa_A 254 ARGGAALSIRHITGKP 269 (433)
T ss_dssp SCCTHHHHHHHHHCCC
T ss_pred ccHHHHHHHHHHHCCC
Confidence 433 223355555433
No 238
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.79 E-value=3.2e-05 Score=54.49 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=22.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~ 43 (193)
.....|+|+|++|||||||++.+.+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 56678999999999999999998753
No 239
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.75 E-value=2.4e-05 Score=53.74 Aligned_cols=39 Identities=18% Similarity=0.113 Sum_probs=28.7
Q ss_pred HHHHHHHHHhhCCCCCccEEEEEcCCCCCHHHHHHHHhcC
Q 029437 4 LDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~ 43 (193)
+..++.+..+.... ..-.++++|++|+|||||++.+.+.
T Consensus 23 ~~~~~~~~~~~~~~-~g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 23 LLTIRVFVHNFNPE-EGKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp HHHHHHHHHSCCGG-GCCEEEECCSSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccc-CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 45556666555432 3457999999999999999998764
No 240
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.73 E-value=4.3e-05 Score=59.98 Aligned_cols=26 Identities=15% Similarity=0.217 Sum_probs=22.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~ 43 (193)
.+-.-|.|+|++++|||+|+|++.+.
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhh
Confidence 34566899999999999999999863
No 241
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.73 E-value=1.4e-05 Score=55.95 Aligned_cols=22 Identities=36% Similarity=0.513 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 029437 21 AKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~ 42 (193)
-.++|+||+|||||||++.+.+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999975
No 242
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.72 E-value=4.2e-05 Score=55.08 Aligned_cols=25 Identities=20% Similarity=0.357 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKDER 44 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~~~ 44 (193)
.-.++|+|++|||||||++.+.+-.
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3468999999999999999998754
No 243
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.72 E-value=1.7e-05 Score=54.69 Aligned_cols=23 Identities=17% Similarity=0.433 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~ 43 (193)
-.++|+|++|||||||++.+.+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999999764
No 244
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.71 E-value=2.2e-05 Score=56.80 Aligned_cols=34 Identities=18% Similarity=0.106 Sum_probs=20.6
Q ss_pred HHHHHHHhhCCCCCccEEEEEcCCCCCHHHHHHHHh
Q 029437 6 WFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLK 41 (193)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~ 41 (193)
++..++++++.. ...|+|+|++||||||+++.+.
T Consensus 15 ~~~~~~~~~~~~--~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 15 TENLYFQSMASK--LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp -----------C--CCEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHHHHhcCC--CcEEEEECCCCCCHHHHHHHHH
Confidence 445555555532 4589999999999999999998
No 245
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.69 E-value=2.7e-05 Score=53.90 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=22.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~ 43 (193)
.+.-.|+++|++||||||+++.+.+.
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 34457999999999999999999875
No 246
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.66 E-value=6.7e-05 Score=53.62 Aligned_cols=24 Identities=29% Similarity=0.373 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDER 44 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~ 44 (193)
-.++++|++|||||||++.+.+-.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998753
No 247
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=97.66 E-value=0.00054 Score=51.11 Aligned_cols=84 Identities=11% Similarity=0.147 Sum_probs=53.2
Q ss_pred CEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEE-EEEeCCCCCCCCCHHH
Q 029437 63 KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFL-VLGNKIDIPYAASEEE 141 (193)
Q Consensus 63 ~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pvi-iv~nK~D~~~~~~~~~ 141 (193)
.+.+.++|+|+...... ....+..+|.+++|+.. +..++......+..+.......+.+++ +|+|+++.. ...++
T Consensus 156 ~yD~ViiD~p~~~~~~~-~~~~l~~aD~viiv~~~-~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~~--~~~~~ 231 (307)
T 3end_A 156 DTDVVIFDVLGDVVCGG-FAAPLQHADQAVVVTAN-DFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT--DEVDR 231 (307)
T ss_dssp SCSEEEEEECCSSCCGG-GGGGGGTCSEEEEEECS-SHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC--HHHHH
T ss_pred cCCEEEEeCCCccchHH-HHHHHHHCCEEEEEecC-cHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCcH--HHHHH
Confidence 46789999987543221 12345778999999876 555566666666665433233466765 999999943 23455
Q ss_pred HHHhhCCCc
Q 029437 142 LRYHLGLSN 150 (193)
Q Consensus 142 ~~~~~~~~~ 150 (193)
+.+.++...
T Consensus 232 ~~~~~g~~v 240 (307)
T 3end_A 232 FCKETNFRR 240 (307)
T ss_dssp HHHHHTCCE
T ss_pred HHHHcCCCc
Confidence 666666544
No 248
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.65 E-value=3e-05 Score=54.32 Aligned_cols=24 Identities=29% Similarity=0.591 Sum_probs=20.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~ 42 (193)
....|+|+|++||||||+++.+.+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 445799999999999999999864
No 249
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.64 E-value=3.2e-05 Score=54.11 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~~ 43 (193)
.-.++|+|++|||||||++.+.+.
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 446999999999999999999764
No 250
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.64 E-value=7.8e-05 Score=53.83 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDER 44 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~ 44 (193)
-.++++|++|||||||++.+.+-.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999998754
No 251
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.63 E-value=2.6e-05 Score=53.97 Aligned_cols=22 Identities=41% Similarity=0.529 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 029437 22 KILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~~ 43 (193)
.++|+|++|||||||++.+.+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 3789999999999999999754
No 252
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.63 E-value=3.3e-05 Score=55.02 Aligned_cols=27 Identities=19% Similarity=0.304 Sum_probs=22.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDER 44 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 44 (193)
+..--++|+||+|||||||++.+.+..
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 455679999999999999999997643
No 253
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.62 E-value=7e-05 Score=55.18 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKDER 44 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~~~ 44 (193)
.-.++|+|++|||||||++.+.+-.
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC
Confidence 3468999999999999999998754
No 254
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.62 E-value=7.3e-05 Score=54.73 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKDER 44 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~~~ 44 (193)
.-.++|+|++|||||||++.+.+-.
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999998753
No 255
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.61 E-value=2.9e-05 Score=54.67 Aligned_cols=26 Identities=19% Similarity=0.374 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~ 44 (193)
..-.++|+|++|||||||++.+.+..
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34468999999999999999997643
No 256
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.58 E-value=9.5e-05 Score=53.93 Aligned_cols=25 Identities=24% Similarity=0.437 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKDER 44 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~~~ 44 (193)
.-.++|+|++|||||||++.+.+-.
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468999999999999999998754
No 257
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.57 E-value=3.7e-05 Score=52.32 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~ 43 (193)
..|+|+|++||||||+.+.+...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999998753
No 258
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.57 E-value=9.7e-05 Score=54.87 Aligned_cols=26 Identities=19% Similarity=0.170 Sum_probs=22.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhc
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~ 42 (193)
......|+|+|++|||||||++.+..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45667899999999999999988753
No 259
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.57 E-value=0.0001 Score=53.20 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKDER 44 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~~~ 44 (193)
.-.++|+|++|||||||++.+.+-.
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468999999999999999998754
No 260
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.57 E-value=0.00012 Score=53.09 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKDER 44 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~~~ 44 (193)
.-.++|+|++|||||||++.+.+-.
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999998754
No 261
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.57 E-value=3.4e-05 Score=52.69 Aligned_cols=21 Identities=19% Similarity=0.379 Sum_probs=18.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHh
Q 029437 21 AKILFLGLDNAGKTTLLHMLK 41 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~ 41 (193)
--++++|++|||||||++.+.
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 458999999999999999644
No 262
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.57 E-value=0.00012 Score=51.93 Aligned_cols=24 Identities=33% Similarity=0.419 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDER 44 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~ 44 (193)
-.++|+|++|||||||++.+.+-.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999998753
No 263
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.56 E-value=3.6e-05 Score=54.72 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKDER 44 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~~~ 44 (193)
.-.++|+|++|||||||++.+.+..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3468999999999999999997643
No 264
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.56 E-value=9.7e-05 Score=54.07 Aligned_cols=25 Identities=24% Similarity=0.394 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKDER 44 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~~~ 44 (193)
.-.++|+|++|||||||++.+.+-.
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 3468999999999999999998754
No 265
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.54 E-value=4.8e-05 Score=53.59 Aligned_cols=25 Identities=36% Similarity=0.300 Sum_probs=21.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcC
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~ 43 (193)
+...|+|+|++|||||||++.+.+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4457999999999999999998763
No 266
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.54 E-value=0.00011 Score=53.79 Aligned_cols=25 Identities=32% Similarity=0.498 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKDER 44 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~~~ 44 (193)
.-.++|+|++|||||||++.+.+-.
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3468999999999999999998754
No 267
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.53 E-value=5.5e-05 Score=52.96 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKDER 44 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~~~ 44 (193)
...|+|+|++||||||+++.+.+.-
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4579999999999999999987653
No 268
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.52 E-value=0.00016 Score=52.74 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKDER 44 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~~~ 44 (193)
.-.++|+|++|||||||++.+.+-.
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999998754
No 269
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.51 E-value=0.00059 Score=47.57 Aligned_cols=68 Identities=13% Similarity=0.003 Sum_probs=45.4
Q ss_pred CEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCC-CCCCCcEEEEEeCCCCC
Q 029437 63 KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDE-ALANVPFLVLGNKIDIP 134 (193)
Q Consensus 63 ~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~pviiv~nK~D~~ 134 (193)
.+++.++|+|+... ......+..+|.+++++..+... ......+..+.... ..++.++.+|+|+.|..
T Consensus 75 ~yD~viiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~ 143 (206)
T 4dzz_A 75 DYDFAIVDGAGSLS--VITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEM 143 (206)
T ss_dssp TSSEEEEECCSSSS--HHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred CCCEEEEECCCCCC--HHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence 46889999998652 23344556789999999885443 45555555443221 13467889999999964
No 270
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.51 E-value=0.00016 Score=53.18 Aligned_cols=26 Identities=19% Similarity=0.335 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~ 44 (193)
..-.++|+|++|||||||++.+.+-.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33468999999999999999998754
No 271
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.50 E-value=7e-05 Score=52.37 Aligned_cols=25 Identities=12% Similarity=0.409 Sum_probs=21.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcC
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~ 43 (193)
..--|+|+||+|||||||++.|...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 4457899999999999999999754
No 272
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.50 E-value=0.00015 Score=52.03 Aligned_cols=25 Identities=36% Similarity=0.433 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKDER 44 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~~~ 44 (193)
.-.++|+|++|||||||++.+.+-.
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468999999999999999998753
No 273
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.50 E-value=0.00014 Score=53.27 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKDER 44 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~~~ 44 (193)
.-.++|+|++|||||||++.+.+-.
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3468999999999999999998754
No 274
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.50 E-value=7.4e-05 Score=52.67 Aligned_cols=26 Identities=19% Similarity=0.270 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~ 44 (193)
...-|+|+||+||||||+++.|....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 34569999999999999999997653
No 275
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.49 E-value=7.4e-05 Score=51.06 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 029437 21 AKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~ 42 (193)
..|+++|++||||||+.+.|..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999865
No 276
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.48 E-value=0.00017 Score=55.08 Aligned_cols=24 Identities=33% Similarity=0.501 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDER 44 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~ 44 (193)
-.++++||+|||||||++.+.+-.
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 358999999999999999998754
No 277
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.48 E-value=6.7e-05 Score=51.79 Aligned_cols=23 Identities=22% Similarity=0.354 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~ 42 (193)
...|+|.|++||||||+.+.|..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999854
No 278
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.48 E-value=6.7e-05 Score=50.90 Aligned_cols=20 Identities=30% Similarity=0.587 Sum_probs=18.6
Q ss_pred cEEEEEcCCCCCHHHHHHHH
Q 029437 21 AKILFLGLDNAGKTTLLHML 40 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l 40 (193)
..|+++|++||||||+.+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999999
No 279
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.47 E-value=7.3e-05 Score=53.16 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~ 42 (193)
...|+|+|++||||||+.+.+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999864
No 280
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.47 E-value=8.3e-05 Score=54.07 Aligned_cols=34 Identities=24% Similarity=0.257 Sum_probs=25.8
Q ss_pred HHHHhhCCCCCccEEEEEcCCCCCHHHHHHHHhc
Q 029437 9 GVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 9 ~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~ 42 (193)
.++......+....|+++|+|||||||+.+.+..
T Consensus 21 ~~~~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 21 SLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp HHHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred HHHccCCcccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3443434455667899999999999999999854
No 281
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.47 E-value=6.5e-05 Score=52.05 Aligned_cols=21 Identities=43% Similarity=0.564 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 029437 23 ILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 23 i~v~G~~~~GKssl~~~l~~~ 43 (193)
|+|+||+|||||||+++|...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 889999999999999998643
No 282
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.47 E-value=0.00016 Score=53.44 Aligned_cols=25 Identities=44% Similarity=0.659 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKDER 44 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~~~ 44 (193)
.-.++|+|++|||||||++.+.+-.
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3468999999999999999998754
No 283
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.47 E-value=7.1e-05 Score=52.54 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=20.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~ 42 (193)
....|+|+|++||||||+++.|..
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHH
Confidence 445799999999999999999864
No 284
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.47 E-value=0.00019 Score=52.37 Aligned_cols=36 Identities=22% Similarity=0.293 Sum_probs=26.9
Q ss_pred HHHHHHHHHhhCCC-CCccEEEEEcCCCCCHHHHHHHHhc
Q 029437 4 LDWFYGVLASLGLW-QKEAKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 4 ~~~~~~~~~~~~~~-~~~~~i~v~G~~~~GKssl~~~l~~ 42 (193)
..|++.|+ .+. .+.-.|++.||||+|||.|+.++..
T Consensus 90 ~~~l~~~l---~~~~~~~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 90 ASVFLGWA---TKKFGKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp HHHHHHHH---TTCSTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHH---hCCCCCCcEEEEECCCCCCHHHHHHHHHh
Confidence 44555555 333 3345699999999999999999876
No 285
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.47 E-value=7.5e-05 Score=50.96 Aligned_cols=24 Identities=13% Similarity=0.368 Sum_probs=20.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~ 42 (193)
....|+++|++||||||+++.+..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 345799999999999999998864
No 286
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.47 E-value=8e-05 Score=50.22 Aligned_cols=26 Identities=31% Similarity=0.226 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~ 44 (193)
..-.++++|+.|||||||++.+.+..
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34469999999999999999998754
No 287
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.46 E-value=7.3e-05 Score=51.47 Aligned_cols=24 Identities=33% Similarity=0.434 Sum_probs=20.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~ 42 (193)
....|+++|++||||||+.+.+..
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999863
No 288
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.46 E-value=6.2e-05 Score=52.08 Aligned_cols=21 Identities=24% Similarity=0.278 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029437 22 KILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~ 42 (193)
.++++|++||||||+++.+..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 589999999999999999975
No 289
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.46 E-value=7e-05 Score=53.98 Aligned_cols=25 Identities=32% Similarity=0.397 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKDER 44 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~~~ 44 (193)
.-.++|+|++|||||||++.+.+-.
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999998754
No 290
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.45 E-value=0.00013 Score=54.02 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=22.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhc
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~ 42 (193)
.+...-|+++|+|||||||+.+.+..
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34556799999999999999999864
No 291
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.43 E-value=7.9e-05 Score=50.52 Aligned_cols=21 Identities=29% Similarity=0.265 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029437 22 KILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~ 42 (193)
.|+|+|++||||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 292
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.43 E-value=8e-05 Score=53.89 Aligned_cols=26 Identities=27% Similarity=0.437 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~ 44 (193)
..-.++|+|++|||||||++.+.+-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34468999999999999999998653
No 293
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.43 E-value=9.5e-05 Score=55.29 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~ 44 (193)
..-.++|+|++|||||||++.+.+-.
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCC
Confidence 34579999999999999999998643
No 294
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.42 E-value=0.00019 Score=54.94 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKDER 44 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~~~ 44 (193)
.-.++|+|++|||||||++.+.+-.
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHhcCC
Confidence 3468999999999999999998754
No 295
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.42 E-value=0.0001 Score=50.95 Aligned_cols=24 Identities=38% Similarity=0.426 Sum_probs=20.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~ 42 (193)
....|+++|++||||||+.+.+..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999864
No 296
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.42 E-value=0.00034 Score=54.68 Aligned_cols=65 Identities=17% Similarity=0.083 Sum_probs=36.7
Q ss_pred CCEEEEEEEcCChhhhH-hhHH-----hhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCc-EEEEEeCCCCC
Q 029437 62 GKIKFKAFDLGGHQIAR-RVWK-----DYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVP-FLVLGNKIDIP 134 (193)
Q Consensus 62 ~~~~~~~~D~~G~~~~~-~~~~-----~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~D~~ 134 (193)
.++.+.++||||..... .... ...-.+|.+++|+|+.... ........+-. ..+ .-+++||.|..
T Consensus 179 ~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq---~av~~a~~f~~-----~l~i~GVIlTKlD~~ 250 (425)
T 2ffh_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQ---EALSVARAFDE-----KVGVTGLVLTKLDGD 250 (425)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHH-----HTCCCEEEEESGGGC
T ss_pred CCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchH---HHHHHHHHHHh-----cCCceEEEEeCcCCc
Confidence 45679999999953321 1111 1122578999999986432 22222222211 122 45788999975
No 297
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.41 E-value=0.00024 Score=49.57 Aligned_cols=39 Identities=21% Similarity=0.204 Sum_probs=26.6
Q ss_pred HHHHHHHHHhhCCCCCccEEEEEcCCCCCHHHHHHHHhc
Q 029437 4 LDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~ 42 (193)
+..++.+............+++.|++|+|||+|+..+..
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 38 IRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp HHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHH
Confidence 344445554433222226899999999999999998875
No 298
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.41 E-value=6.9e-05 Score=52.91 Aligned_cols=23 Identities=26% Similarity=0.225 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~ 43 (193)
-.++++|++|||||||++.+.+.
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999875
No 299
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.41 E-value=0.00027 Score=54.28 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDER 44 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~ 44 (193)
-.++++|++|||||||++.+.+-.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCcHHHHHHHHHHcCC
Confidence 358999999999999999998764
No 300
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.40 E-value=9.2e-05 Score=53.77 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDER 44 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~ 44 (193)
-.++++|++|||||||++.+.+-.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 468999999999999999998753
No 301
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.40 E-value=0.00022 Score=49.87 Aligned_cols=26 Identities=31% Similarity=0.302 Sum_probs=22.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhc
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~ 42 (193)
......|+|+|++||||||+++.+.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34556899999999999999998864
No 302
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.39 E-value=7.7e-05 Score=51.85 Aligned_cols=22 Identities=32% Similarity=0.552 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 029437 22 KILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~~ 43 (193)
+++++|++|||||||++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5899999999999999998764
No 303
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.39 E-value=9.5e-05 Score=51.74 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 029437 21 AKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~ 42 (193)
.+|+|+|++||||||+.+.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999876
No 304
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.39 E-value=0.00011 Score=51.47 Aligned_cols=26 Identities=38% Similarity=0.474 Sum_probs=21.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~ 43 (193)
.+...|+|+|++||||||+++.+.+.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34567999999999999999998653
No 305
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.39 E-value=0.00011 Score=51.60 Aligned_cols=24 Identities=42% Similarity=0.659 Sum_probs=21.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~ 42 (193)
+...|+|.|++||||||+.+.|..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 446899999999999999999864
No 306
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.39 E-value=9.6e-05 Score=52.19 Aligned_cols=20 Identities=35% Similarity=0.544 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 029437 22 KILFLGLDNAGKTTLLHMLK 41 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~ 41 (193)
+|+|+|++||||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 79999999999999999984
No 307
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.39 E-value=9.3e-05 Score=54.08 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~ 44 (193)
..-.++|+|++|||||||++.+.+-.
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 33468999999999999999998753
No 308
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.39 E-value=0.00012 Score=50.57 Aligned_cols=25 Identities=36% Similarity=0.554 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcC
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~ 43 (193)
...+|+++|++||||||+.+.+...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4468999999999999999998754
No 309
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.39 E-value=0.0001 Score=53.60 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~ 43 (193)
-.++|+|++|||||||++.+.+-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999985
No 310
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.38 E-value=0.0001 Score=50.97 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=20.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~ 42 (193)
...|+++|++||||||+.+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998753
No 311
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.38 E-value=0.00011 Score=50.26 Aligned_cols=22 Identities=27% Similarity=0.336 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 029437 21 AKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~ 42 (193)
..|+++|+|||||||+.+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3589999999999999999986
No 312
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.38 E-value=0.0001 Score=56.27 Aligned_cols=25 Identities=28% Similarity=0.389 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCc
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDERL 45 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~~ 45 (193)
-.++++|++|||||||+|.+.+...
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CEEEEECCCCccHHHHHHHHhcccc
Confidence 4799999999999999999997653
No 313
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.37 E-value=0.00011 Score=55.25 Aligned_cols=26 Identities=23% Similarity=0.133 Sum_probs=22.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhc
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~ 42 (193)
......|+|+|++|||||||++.+.+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHh
Confidence 45667899999999999999999875
No 314
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.37 E-value=0.0014 Score=50.00 Aligned_cols=25 Identities=28% Similarity=0.526 Sum_probs=21.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhc
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~ 42 (193)
...-.++|.|++|+|||++++.+..
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHH
Confidence 4445799999999999999999875
No 315
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.37 E-value=0.00011 Score=53.96 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~~ 43 (193)
.-.++|+|++|||||||++.+.+-
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346899999999999999999985
No 316
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.37 E-value=0.00011 Score=52.01 Aligned_cols=21 Identities=29% Similarity=0.433 Sum_probs=19.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHh
Q 029437 21 AKILFLGLDNAGKTTLLHMLK 41 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~ 41 (193)
++|+|+|++||||||+.+.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIV 21 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 379999999999999999984
No 317
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.37 E-value=0.00011 Score=52.44 Aligned_cols=22 Identities=18% Similarity=0.329 Sum_probs=20.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHh
Q 029437 20 EAKILFLGLDNAGKTTLLHMLK 41 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~ 41 (193)
...|+|+|++||||||+.+.|.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3689999999999999999885
No 318
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.36 E-value=0.00024 Score=54.23 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDER 44 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~ 44 (193)
-.++++|++|||||||++.+.+-.
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 458999999999999999998764
No 319
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.36 E-value=0.00024 Score=54.29 Aligned_cols=24 Identities=38% Similarity=0.409 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDER 44 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~ 44 (193)
-.++++|++|||||||++.+.+-.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHHCCC
Confidence 468999999999999999998764
No 320
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.36 E-value=0.00011 Score=51.45 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 029437 21 AKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~ 42 (193)
+.|+|+|++||||||+.+.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 321
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.36 E-value=0.00013 Score=50.97 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~ 42 (193)
...|+++|++||||||+.+.+..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 34899999999999999999863
No 322
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.36 E-value=0.00024 Score=54.62 Aligned_cols=24 Identities=33% Similarity=0.596 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDER 44 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~ 44 (193)
-.++++|++|||||||++.+.+-.
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHHcCC
Confidence 458999999999999999998765
No 323
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.35 E-value=0.00014 Score=50.77 Aligned_cols=25 Identities=40% Similarity=0.559 Sum_probs=21.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcC
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~ 43 (193)
....|+|+|++||||||+.+.|...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3467999999999999999998764
No 324
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.35 E-value=0.00025 Score=54.22 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDER 44 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~ 44 (193)
-.++++|++|||||||++.+.+-.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 458999999999999999998764
No 325
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.35 E-value=0.00011 Score=53.47 Aligned_cols=24 Identities=33% Similarity=0.505 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDER 44 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~ 44 (193)
-.++++|++|||||||++.+.+-.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999998754
No 326
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.35 E-value=0.00012 Score=52.89 Aligned_cols=24 Identities=21% Similarity=0.218 Sum_probs=21.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~ 42 (193)
....|+|+|++|||||||++.+.+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 446799999999999999999865
No 327
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.35 E-value=0.00026 Score=53.25 Aligned_cols=26 Identities=27% Similarity=0.134 Sum_probs=22.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhc
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~ 42 (193)
....+-|+|+|++|||||||++.+.+
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 44567899999999999999998853
No 328
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.34 E-value=0.00015 Score=50.57 Aligned_cols=26 Identities=31% Similarity=0.395 Sum_probs=22.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhc
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~ 42 (193)
......|+|+|++||||||+.+.|..
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44557899999999999999998854
No 329
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.34 E-value=0.00012 Score=54.62 Aligned_cols=25 Identities=32% Similarity=0.478 Sum_probs=21.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhc
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~ 42 (193)
.+.-.++|+|++|||||||++.+.+
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhh
Confidence 3445799999999999999999874
No 330
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.34 E-value=0.00016 Score=49.83 Aligned_cols=27 Identities=33% Similarity=0.439 Sum_probs=22.8
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhc
Q 029437 16 LWQKEAKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 16 ~~~~~~~i~v~G~~~~GKssl~~~l~~ 42 (193)
..+....|+++|.+||||||+++.+..
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 345667899999999999999999864
No 331
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.33 E-value=0.00012 Score=53.53 Aligned_cols=26 Identities=31% Similarity=0.380 Sum_probs=21.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~ 43 (193)
...-.++|+|++||||||+++.+.+.
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHh
Confidence 34447999999999999999998753
No 332
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.33 E-value=0.00013 Score=50.09 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=20.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~ 42 (193)
...|+++|++||||||+.+.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999853
No 333
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.32 E-value=0.00029 Score=54.10 Aligned_cols=25 Identities=32% Similarity=0.464 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKDER 44 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~~~ 44 (193)
.-.++++|++|||||||++.+.+-.
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC
Confidence 3468999999999999999998764
No 334
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.31 E-value=0.00013 Score=53.34 Aligned_cols=24 Identities=38% Similarity=0.595 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDER 44 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~ 44 (193)
-.++|+|++|||||||++.+.+-.
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998764
No 335
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.31 E-value=0.00017 Score=50.64 Aligned_cols=25 Identities=40% Similarity=0.606 Sum_probs=21.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhc
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~ 42 (193)
+....|+|+|++||||||+.+.|..
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHH
Confidence 3457899999999999999999864
No 336
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.31 E-value=0.00012 Score=51.25 Aligned_cols=22 Identities=18% Similarity=0.527 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 029437 21 AKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~ 42 (193)
..|+|+|++||||||+.+.|..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 337
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.30 E-value=0.00016 Score=50.73 Aligned_cols=26 Identities=38% Similarity=0.425 Sum_probs=22.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~ 43 (193)
.....|+|+|++||||||+++.+...
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34567999999999999999999864
No 338
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.30 E-value=0.00021 Score=51.66 Aligned_cols=25 Identities=32% Similarity=0.497 Sum_probs=21.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhc
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~ 42 (193)
...++|+|+|++||||||+.+.|..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999999853
No 339
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.30 E-value=0.00016 Score=49.55 Aligned_cols=25 Identities=36% Similarity=0.349 Sum_probs=21.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhc
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~ 42 (193)
+....|+++|++||||||+.+.+..
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence 3445799999999999999999863
No 340
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.29 E-value=0.00016 Score=51.26 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~ 42 (193)
...|+|+|++||||||+.+.|..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999998853
No 341
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.29 E-value=0.00014 Score=52.43 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=20.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHh
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLK 41 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~ 41 (193)
.+.--++|+|++|||||||++.+.
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHH
Confidence 344568999999999999999887
No 342
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.28 E-value=0.00016 Score=50.40 Aligned_cols=21 Identities=33% Similarity=0.466 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029437 22 KILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~ 42 (193)
.|+|.|++||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999865
No 343
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.27 E-value=0.00017 Score=50.82 Aligned_cols=21 Identities=38% Similarity=0.479 Sum_probs=18.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHh
Q 029437 21 AKILFLGLDNAGKTTLLHMLK 41 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~ 41 (193)
++|+++|+|||||+|....|.
T Consensus 1 M~Iil~GpPGsGKgTqa~~La 21 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLA 21 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 369999999999999999885
No 344
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.27 E-value=0.00014 Score=51.76 Aligned_cols=25 Identities=32% Similarity=0.328 Sum_probs=21.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhc
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~ 42 (193)
...-.++|+|++|||||||++.+.+
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4445699999999999999999976
No 345
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.27 E-value=0.00016 Score=50.09 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=20.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~ 42 (193)
+...|+|+|++||||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999998853
No 346
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.27 E-value=0.00022 Score=54.45 Aligned_cols=25 Identities=28% Similarity=0.444 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKDER 44 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~~~ 44 (193)
.-.++++|++|||||||++.+.+-.
T Consensus 31 Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 31 GERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3468999999999999999998754
No 347
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.26 E-value=0.00016 Score=49.85 Aligned_cols=21 Identities=29% Similarity=0.466 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029437 22 KILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~ 42 (193)
.|+|.|++||||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999864
No 348
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.26 E-value=9.5e-05 Score=52.89 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=16.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHh-cC
Q 029437 20 EAKILFLGLDNAGKTTLLHMLK-DE 43 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~-~~ 43 (193)
.-.++|+|++||||||+++.+. +.
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC--
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcC
Confidence 3468999999999999999998 54
No 349
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.26 E-value=0.00035 Score=49.81 Aligned_cols=35 Identities=17% Similarity=0.195 Sum_probs=26.1
Q ss_pred HHHHHHHHHhhCCCCCccEEEEEcCCCCCHHHHHHHHhc
Q 029437 4 LDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~ 42 (193)
+..++.+..+. ..-.++|.|++|+|||++++.+..
T Consensus 40 ~~~l~~~~~~~----~~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 40 IGALKSAASGD----GVQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp HHHHHHHHHTC----SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHhCC----CCCeEEEECCCCCCHHHHHHHHHH
Confidence 44555555432 345899999999999999998865
No 350
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.26 E-value=0.00019 Score=50.49 Aligned_cols=24 Identities=38% Similarity=0.519 Sum_probs=21.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~ 42 (193)
+...|+|+|++||||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999864
No 351
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.25 E-value=0.00023 Score=54.14 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDER 44 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~ 44 (193)
-.++++|++|||||||++.+.+-.
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCccHHHHHHHHHcCC
Confidence 468999999999999999998764
No 352
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.24 E-value=0.0002 Score=52.01 Aligned_cols=24 Identities=33% Similarity=0.278 Sum_probs=21.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHh
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLK 41 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~ 41 (193)
+....|+|+|++||||||+++.+.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 345689999999999999999997
No 353
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.24 E-value=0.00017 Score=53.53 Aligned_cols=26 Identities=35% Similarity=0.451 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~ 44 (193)
..-.++|+|++|||||||++.+.+-.
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 33468999999999999999998754
No 354
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.22 E-value=0.00041 Score=47.41 Aligned_cols=24 Identities=21% Similarity=0.398 Sum_probs=20.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~~ 43 (193)
.-.+++.|++|+|||++++.+...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999988653
No 355
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.22 E-value=0.00019 Score=50.67 Aligned_cols=21 Identities=33% Similarity=0.567 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029437 22 KILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~ 42 (193)
+|+|+|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998853
No 356
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.22 E-value=5.4e-05 Score=56.60 Aligned_cols=26 Identities=27% Similarity=0.537 Sum_probs=21.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~ 44 (193)
..-.++++|++|||||||+|.+.+..
T Consensus 172 ~G~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred CCCEEEEECCCCCCHHHHHHHhcccc
Confidence 34589999999999999999998754
No 357
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.22 E-value=0.00018 Score=53.75 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDER 44 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~ 44 (193)
-.++++|++|||||||++.+.+..
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CeEEEECCCCCcHHHHHHHhcccc
Confidence 468999999999999999998765
No 358
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.21 E-value=0.00021 Score=48.23 Aligned_cols=21 Identities=29% Similarity=0.540 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029437 22 KILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~ 42 (193)
+|+|+|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999864
No 359
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.20 E-value=0.00018 Score=49.14 Aligned_cols=21 Identities=38% Similarity=0.700 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029437 22 KILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~ 42 (193)
+|+|+|++||||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999999864
No 360
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.20 E-value=0.00017 Score=53.05 Aligned_cols=21 Identities=33% Similarity=0.529 Sum_probs=19.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 029437 23 ILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 23 i~v~G~~~~GKssl~~~l~~~ 43 (193)
++++|++|+|||||++.+.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999763
No 361
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.20 E-value=0.00022 Score=53.45 Aligned_cols=25 Identities=24% Similarity=0.220 Sum_probs=22.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhc
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~ 42 (193)
.....|+|+|++|||||||++.+.+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4556899999999999999999876
No 362
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.19 E-value=0.00016 Score=48.22 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=21.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcC
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~ 43 (193)
..-.++++|++|+|||+|++.+.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4457999999999999999998764
No 363
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.18 E-value=9.4e-05 Score=50.57 Aligned_cols=70 Identities=13% Similarity=0.029 Sum_probs=34.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhh---cccCCEEEEEEE
Q 029437 22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDY---YAKVDAVVYLVD 96 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~---~~~~d~vl~v~d 96 (193)
.++|+|++|||||||++.+.+.-. ..+.....+..++..+.-+|.++...++.....+ +-..+..+++.+
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~-----~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~i~~ 76 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILR-----ERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAFIRR 76 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHH-----HTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh-----hcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEEEec
Confidence 689999999999999999876421 1122356666666554445555555444211110 233455666555
No 364
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.17 E-value=0.00023 Score=53.19 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKDER 44 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~~~ 44 (193)
...++++|++|||||||+|.+. ..
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred CcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 3478999999999999999998 44
No 365
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.17 E-value=0.00026 Score=50.07 Aligned_cols=23 Identities=22% Similarity=0.289 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~ 42 (193)
.+.|+|+|++||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999865
No 366
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.16 E-value=0.00017 Score=55.31 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~~ 43 (193)
.-+++|+|++|||||||++.+.+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998764
No 367
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.16 E-value=0.00027 Score=49.17 Aligned_cols=25 Identities=24% Similarity=0.230 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcC
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~ 43 (193)
+...|+|+|++||||||+.+.|...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4568999999999999999998764
No 368
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.15 E-value=0.00017 Score=49.38 Aligned_cols=23 Identities=30% Similarity=0.323 Sum_probs=16.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~ 42 (193)
...|+++|.+||||||+.+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999863
No 369
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.14 E-value=0.00027 Score=50.69 Aligned_cols=25 Identities=16% Similarity=0.166 Sum_probs=20.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhc
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~ 42 (193)
+..+.|+|.|++||||||+.+.+..
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4557899999999999999999863
No 370
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.13 E-value=0.0003 Score=48.12 Aligned_cols=24 Identities=33% Similarity=0.555 Sum_probs=20.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~ 42 (193)
....|+++|++||||||+.+.+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999865
No 371
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.12 E-value=0.00024 Score=51.48 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 029437 22 KILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~~ 43 (193)
.++++|++|+|||||++.+.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999999864
No 372
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.12 E-value=0.00025 Score=54.20 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 029437 22 KILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~~ 43 (193)
.++|+|++||||||+++.+.+.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7999999999999999998653
No 373
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.11 E-value=0.00026 Score=50.23 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=19.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHh
Q 029437 21 AKILFLGLDNAGKTTLLHMLK 41 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~ 41 (193)
..|+|+|++||||||+.+.|.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La 26 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIK 26 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999885
No 374
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.10 E-value=0.00032 Score=48.65 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 029437 21 AKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~ 42 (193)
..|+++|++||||||+.+.|..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998854
No 375
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.09 E-value=0.00032 Score=51.14 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 029437 21 AKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~ 42 (193)
..|+++|.|||||||+.+.+..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999999864
No 376
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.09 E-value=0.00032 Score=48.40 Aligned_cols=21 Identities=43% Similarity=0.577 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029437 22 KILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~ 42 (193)
.|+++|++||||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 377
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.08 E-value=0.00034 Score=48.73 Aligned_cols=26 Identities=27% Similarity=0.328 Sum_probs=22.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhc
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~ 42 (193)
.-++..|+++|.+||||||+.+.+..
T Consensus 9 ~~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 9 HHHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHHH
Confidence 44678999999999999999999865
No 378
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.08 E-value=0.00032 Score=49.89 Aligned_cols=21 Identities=38% Similarity=0.615 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029437 22 KILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~ 42 (193)
.|+|.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998853
No 379
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.08 E-value=0.00048 Score=46.97 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=20.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~~ 43 (193)
.-.++|.|++|+|||++++.+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999988653
No 380
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.08 E-value=0.00038 Score=49.86 Aligned_cols=24 Identities=33% Similarity=0.398 Sum_probs=20.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~ 42 (193)
....|+|+|++||||||+.+.|..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 446899999999999999998853
No 381
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.06 E-value=0.00036 Score=49.41 Aligned_cols=22 Identities=23% Similarity=0.504 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 029437 21 AKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~ 42 (193)
..|+|+|++||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998853
No 382
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.06 E-value=0.00028 Score=48.44 Aligned_cols=21 Identities=33% Similarity=0.550 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029437 22 KILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~ 42 (193)
.|+|+|++||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999998854
No 383
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.06 E-value=0.0004 Score=48.45 Aligned_cols=22 Identities=36% Similarity=0.324 Sum_probs=19.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHh
Q 029437 20 EAKILFLGLDNAGKTTLLHMLK 41 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~ 41 (193)
...|+|+|++||||||+.+.|.
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999886
No 384
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.05 E-value=0.00031 Score=53.15 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDER 44 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~ 44 (193)
-.++|+|++|||||||++.+.+.-
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999998653
No 385
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.05 E-value=0.00044 Score=51.67 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=19.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHh
Q 029437 20 EAKILFLGLDNAGKTTLLHMLK 41 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~ 41 (193)
.-.++++|++||||||+++.+.
T Consensus 102 g~vi~lvG~nGsGKTTll~~La 123 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLG 123 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHH
Confidence 4579999999999999999985
No 386
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.05 E-value=0.00037 Score=48.26 Aligned_cols=21 Identities=38% Similarity=0.678 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029437 22 KILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~ 42 (193)
-|++.|++||||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999864
No 387
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.05 E-value=0.00038 Score=47.06 Aligned_cols=22 Identities=23% Similarity=0.465 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 029437 21 AKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~ 42 (193)
-.|+|+|.+||||||+.+.|..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998853
No 388
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.04 E-value=0.00033 Score=54.16 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKDER 44 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~~~ 44 (193)
.-.++|+|++|||||||++.+.+-.
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred CCEEEEECCCCChHHHHHHHHhCCC
Confidence 3468999999999999999998653
No 389
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=97.04 E-value=0.0067 Score=42.56 Aligned_cols=67 Identities=15% Similarity=0.011 Sum_probs=45.3
Q ss_pred CEEEEEEEcCCh-hhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC
Q 029437 63 KIKFKAFDLGGH-QIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY 135 (193)
Q Consensus 63 ~~~~~~~D~~G~-~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~ 135 (193)
.+++.++|+|+. ... .....+..+|.+++++.. +..+.......+..+-... +.++.+++|+.|...
T Consensus 67 ~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~-~~~~~~~~~~~~~~l~~~~---~~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 67 KYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTP-DALALDALMLTIETLQKLG---NNRFRILLTIIPPYP 134 (209)
T ss_dssp GCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECS-SHHHHHHHHHHHHHHHHTC---SSSEEEEECSBCCTT
T ss_pred cCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecC-CchhHHHHHHHHHHHHhcc---CCCEEEEEEecCCcc
Confidence 467899999987 432 223455678999999887 4445566656555553311 567889999999754
No 390
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.03 E-value=0.00032 Score=53.72 Aligned_cols=25 Identities=40% Similarity=0.501 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKDER 44 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~~~ 44 (193)
.-.++|+|++|||||||++.+.+.-
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcC
Confidence 3479999999999999999998753
No 391
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.03 E-value=0.00034 Score=50.85 Aligned_cols=21 Identities=24% Similarity=0.292 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029437 22 KILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~ 42 (193)
.|+|+|++|||||||...|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999999853
No 392
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.02 E-value=0.00037 Score=47.23 Aligned_cols=21 Identities=29% Similarity=0.387 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029437 22 KILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~ 42 (193)
.|+|+|++||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998854
No 393
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=97.02 E-value=0.001 Score=54.14 Aligned_cols=26 Identities=15% Similarity=0.328 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~ 44 (193)
+.-.++++|++|||||||++.+.+-.
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 34579999999999999999998753
No 394
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.02 E-value=0.00045 Score=47.59 Aligned_cols=22 Identities=23% Similarity=0.246 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 029437 21 AKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~ 42 (193)
..|+|+|++||||||+.+.+..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998853
No 395
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.02 E-value=0.00033 Score=53.04 Aligned_cols=23 Identities=39% Similarity=0.632 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~ 43 (193)
-.++++||+|+|||||++.+.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 35899999999999999998764
No 396
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.01 E-value=0.00035 Score=53.70 Aligned_cols=24 Identities=33% Similarity=0.428 Sum_probs=20.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~ 42 (193)
..-.++|+|++||||||+++.+.+
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 334699999999999999999875
No 397
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.00 E-value=0.00048 Score=46.87 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 029437 21 AKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~ 42 (193)
..++++|++|||||||+.++..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999875
No 398
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.99 E-value=0.00037 Score=51.26 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 029437 22 KILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~~ 43 (193)
.++++|++|+|||||++.+.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 3999999999999999999864
No 399
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.99 E-value=0.00039 Score=49.69 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=22.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~ 43 (193)
....-|+|.|+.||||||+++.+.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 45667999999999999999998764
No 400
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.98 E-value=0.00041 Score=51.54 Aligned_cols=25 Identities=12% Similarity=0.069 Sum_probs=21.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhc
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~ 42 (193)
....-+++.||||+|||+|++++..
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4445688889999999999999875
No 401
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.98 E-value=0.00046 Score=50.02 Aligned_cols=24 Identities=17% Similarity=0.138 Sum_probs=21.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~ 42 (193)
..+.|+|+|++||||||+.+.|..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998854
No 402
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.98 E-value=0.00048 Score=52.05 Aligned_cols=24 Identities=38% Similarity=0.647 Sum_probs=21.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~ 42 (193)
+.-.++++|++||||||+++.+.+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999864
No 403
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.98 E-value=0.00048 Score=51.42 Aligned_cols=24 Identities=42% Similarity=0.589 Sum_probs=20.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~ 42 (193)
..-.++++|++||||||+++.+.+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 345799999999999999999853
No 404
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.98 E-value=0.00045 Score=47.33 Aligned_cols=21 Identities=14% Similarity=0.207 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029437 22 KILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~ 42 (193)
-.+|+|++|||||||+.++..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999854
No 405
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.97 E-value=0.00089 Score=54.53 Aligned_cols=26 Identities=15% Similarity=0.360 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~ 44 (193)
+.-.++++|++|||||||++.+.+-.
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44579999999999999999998753
No 406
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.97 E-value=0.00066 Score=48.15 Aligned_cols=21 Identities=33% Similarity=0.325 Sum_probs=18.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHh
Q 029437 21 AKILFLGLDNAGKTTLLHMLK 41 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~ 41 (193)
.-|+|+|+|||||+|....|.
T Consensus 30 kiI~llGpPGsGKgTqa~~L~ 50 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLV 50 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 346789999999999998885
No 407
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.96 E-value=0.00041 Score=49.23 Aligned_cols=24 Identities=21% Similarity=0.151 Sum_probs=20.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~ 42 (193)
..-.++|+|++|+|||||+..+..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 445689999999999999999863
No 408
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.96 E-value=0.00034 Score=50.77 Aligned_cols=23 Identities=22% Similarity=0.440 Sum_probs=20.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~ 42 (193)
.-+|+|+|++||||||+.+.+..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999854
No 409
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.96 E-value=0.001 Score=43.89 Aligned_cols=26 Identities=15% Similarity=0.236 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~ 44 (193)
....|++.|++|+|||++.+.+....
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 44579999999999999999987643
No 410
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.95 E-value=0.00079 Score=51.57 Aligned_cols=22 Identities=32% Similarity=0.394 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 029437 22 KILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~~ 43 (193)
.++|.|++|+||||+++.+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999998753
No 411
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.94 E-value=0.022 Score=44.66 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=22.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~ 43 (193)
...--|++.||||+|||+|++++.+.
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 44567999999999999999999763
No 412
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.94 E-value=0.0011 Score=54.25 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~ 44 (193)
+.-.++++|++|||||||++.+.+-.
T Consensus 369 ~G~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 369 SGSVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp TTCEEEEECCTTSSSTHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 34579999999999999999998753
No 413
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.93 E-value=0.00041 Score=54.11 Aligned_cols=23 Identities=35% Similarity=0.329 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~ 43 (193)
-.++|+|++||||||+++.+.+.
T Consensus 168 gii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHhh
Confidence 36999999999999999998753
No 414
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.92 E-value=0.00047 Score=55.22 Aligned_cols=24 Identities=25% Similarity=0.229 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDER 44 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~ 44 (193)
..++|+|++||||||+++.+.+.-
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 359999999999999999997643
No 415
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.91 E-value=0.001 Score=46.58 Aligned_cols=21 Identities=33% Similarity=0.441 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029437 22 KILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~ 42 (193)
.+++.|++|+|||++++.+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999998865
No 416
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.91 E-value=0.00062 Score=49.36 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~~ 43 (193)
...++++|++|+|||++++.+.+.
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 346999999999999999998753
No 417
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.90 E-value=0.00091 Score=47.41 Aligned_cols=21 Identities=33% Similarity=0.575 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029437 22 KILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~ 42 (193)
.++|.|++|+|||++++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 418
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.90 E-value=0.00068 Score=50.05 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=20.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLK 41 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~ 41 (193)
..+.|+|+|++||||||+.+.|.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 35689999999999999999986
No 419
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.89 E-value=0.0013 Score=53.73 Aligned_cols=26 Identities=27% Similarity=0.425 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~ 44 (193)
+.-.++++|++|||||||++.+.+-.
T Consensus 380 ~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 380 PGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp TTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 34579999999999999999998743
No 420
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.89 E-value=0.00066 Score=48.53 Aligned_cols=25 Identities=28% Similarity=0.530 Sum_probs=19.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHh
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLK 41 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~ 41 (193)
.-++++++|+|+|||||||+...+.
T Consensus 5 ~~~~~~~~~~G~pGsGKsT~a~~L~ 29 (230)
T 3gmt_A 5 HHHHMRLILLGAPGAGKGTQANFIK 29 (230)
T ss_dssp ----CEEEEECCTTSCHHHHHHHHH
T ss_pred cccccceeeECCCCCCHHHHHHHHH
Confidence 3467899999999999999999884
No 421
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.88 E-value=0.00061 Score=52.03 Aligned_cols=25 Identities=28% Similarity=0.566 Sum_probs=21.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhc
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~ 42 (193)
...-.++|.|++|+|||||++.+..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHH
Confidence 3345799999999999999999875
No 422
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.88 E-value=0.00099 Score=54.22 Aligned_cols=26 Identities=27% Similarity=0.575 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~ 44 (193)
+.-.++++|++|||||||++.+.+--
T Consensus 366 ~G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 366 KGETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCC
Confidence 34579999999999999999987643
No 423
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.88 E-value=0.00069 Score=47.66 Aligned_cols=25 Identities=36% Similarity=0.502 Sum_probs=21.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhc
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~ 42 (193)
.....|+++|++||||||+.+.+..
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3445799999999999999998864
No 424
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.88 E-value=0.0002 Score=50.38 Aligned_cols=21 Identities=43% Similarity=0.570 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029437 22 KILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~ 42 (193)
-|+|.|++||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999999864
No 425
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.87 E-value=0.0015 Score=48.85 Aligned_cols=37 Identities=14% Similarity=0.154 Sum_probs=25.9
Q ss_pred HHHHHHHHhhCCCCCccEEEEEcCCCCCHHHHHHHHhc
Q 029437 5 DWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~ 42 (193)
..+..|....+.. ....+++.|++|+|||+|+.++..
T Consensus 138 ~~~~~~i~~~~~~-~~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 138 SAILDFVEQYPSA-EQKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp HHHHHHHHHCSCS-SCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHhcccc-CCceEEEECCCCCCHHHHHHHHHH
Confidence 3444455443221 246899999999999999998865
No 426
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.87 E-value=0.0013 Score=47.59 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=20.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~ 42 (193)
....+++.|+||+|||++++.+..
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 445799999999999999999865
No 427
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.87 E-value=0.00078 Score=48.19 Aligned_cols=25 Identities=32% Similarity=0.425 Sum_probs=21.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhc
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~ 42 (193)
.....|+|.|++||||||+++.+..
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 3556799999999999999999865
No 428
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.87 E-value=0.001 Score=49.29 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=21.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcC
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~ 43 (193)
....+++.|+||+|||++++.+...
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 3468999999999999999998753
No 429
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.86 E-value=0.00054 Score=50.83 Aligned_cols=25 Identities=16% Similarity=0.147 Sum_probs=20.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhc
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~ 42 (193)
...--++|+|++|+|||||+..+.+
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 3444689999999999999998754
No 430
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.86 E-value=0.00056 Score=54.07 Aligned_cols=25 Identities=24% Similarity=0.399 Sum_probs=21.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcC
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~ 43 (193)
..-+++|+|++|||||||++.+.+-
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCc
Confidence 4567999999999999999998654
No 431
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.86 E-value=0.0006 Score=51.89 Aligned_cols=26 Identities=27% Similarity=0.319 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~ 44 (193)
+.-+++|+|++|||||||++.+.+..
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34489999999999999999998753
No 432
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.85 E-value=0.0013 Score=50.42 Aligned_cols=23 Identities=35% Similarity=0.504 Sum_probs=20.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~ 42 (193)
.-.++|.|++|+|||++++.+..
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~ 67 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFN 67 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999875
No 433
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.84 E-value=0.0011 Score=49.70 Aligned_cols=35 Identities=29% Similarity=0.332 Sum_probs=25.0
Q ss_pred HHHHHHHhhCCCCCccEEEEEcCCCCCHHHHHHHHhc
Q 029437 6 WFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~ 42 (193)
.++.+..+.+ ...-.+++.|++|+|||+|++.+..
T Consensus 25 ~~~~~~~~~~--~~~~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 25 VVKEALENLG--SLYNPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp HHHHHHHTTT--TSCSSEEEECSSSSSHHHHHHHHHH
T ss_pred HHHHHHhCcC--CCCCeEEEECCCCCcHHHHHHHHHH
Confidence 3444444432 1234699999999999999999875
No 434
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.84 E-value=0.0012 Score=50.88 Aligned_cols=25 Identities=40% Similarity=0.442 Sum_probs=21.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhc
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~ 42 (193)
...-.++++|++|+|||||++.+.+
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3445799999999999999999885
No 435
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.82 E-value=0.0047 Score=47.66 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~~ 43 (193)
...++|.|++|+|||++++++...
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999653
No 436
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.81 E-value=0.0007 Score=54.61 Aligned_cols=26 Identities=19% Similarity=0.356 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~ 44 (193)
..-.++++|++|||||||++.+.+..
T Consensus 46 ~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 46 EGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44579999999999999999998754
No 437
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.81 E-value=0.00094 Score=50.66 Aligned_cols=20 Identities=30% Similarity=0.461 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 029437 23 ILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 23 i~v~G~~~~GKssl~~~l~~ 42 (193)
++++|++|+||||+++.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999998876
No 438
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.80 E-value=0.00081 Score=51.39 Aligned_cols=24 Identities=42% Similarity=0.589 Sum_probs=20.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~ 42 (193)
..-.++++|++||||||+++.+.+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 345799999999999999999853
No 439
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.80 E-value=0.00069 Score=48.46 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=21.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhc
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~ 42 (193)
...--++|+|++|+|||||+..+..
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHH
Confidence 4445799999999999999999876
No 440
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.79 E-value=0.00082 Score=44.72 Aligned_cols=19 Identities=32% Similarity=0.613 Sum_probs=17.2
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 029437 23 ILFLGLDNAGKTTLLHMLK 41 (193)
Q Consensus 23 i~v~G~~~~GKssl~~~l~ 41 (193)
.+|+|+.|+||||++.++.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5789999999999999975
No 441
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.79 E-value=0.0014 Score=48.77 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=20.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhc
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~ 42 (193)
.....+++.|+||+|||++++.+..
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 3455799999999999999987653
No 442
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.79 E-value=0.00065 Score=51.06 Aligned_cols=23 Identities=48% Similarity=0.592 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~ 43 (193)
..++|+|+.|||||||++.+.+.
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHS
T ss_pred cEEEEEecCCCCHHHHHHHHHhh
Confidence 35789999999999999999865
No 443
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.78 E-value=0.00093 Score=46.61 Aligned_cols=21 Identities=14% Similarity=0.251 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029437 22 KILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~ 42 (193)
.|+|.|++||||||+.+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999854
No 444
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.78 E-value=0.002 Score=47.91 Aligned_cols=23 Identities=39% Similarity=0.575 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~ 43 (193)
-.++++|++|+|||++++.+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 47999999999999999988653
No 445
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.77 E-value=0.015 Score=45.42 Aligned_cols=26 Identities=19% Similarity=0.405 Sum_probs=22.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~ 43 (193)
...--|++.||||+|||+|++++.+.
T Consensus 214 ~~prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 214 KPPKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp CCCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCCCCceECCCCchHHHHHHHHHHH
Confidence 34457999999999999999999763
No 446
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.76 E-value=0.00099 Score=47.74 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=21.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~ 42 (193)
....|+|+|++||||||+.+.+..
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998864
No 447
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.75 E-value=0.00089 Score=53.16 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=20.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~ 42 (193)
..-.++|+|++|||||||++.|.+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHH
Confidence 345799999999999999999853
No 448
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.74 E-value=0.00075 Score=53.53 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~ 43 (193)
-.++|+|++|||||||++.+.+-
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcC
Confidence 46899999999999999998643
No 449
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.73 E-value=0.0012 Score=46.40 Aligned_cols=26 Identities=23% Similarity=0.111 Sum_probs=22.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhc
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~ 42 (193)
-...--++++|++|+|||||+..+..
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34455799999999999999999976
No 450
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.72 E-value=0.0015 Score=51.13 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=22.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~ 43 (193)
...--|++.||||+|||+|++++.+.
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHHH
Confidence 34567999999999999999999763
No 451
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.71 E-value=0.001 Score=53.56 Aligned_cols=27 Identities=33% Similarity=0.495 Sum_probs=22.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDER 44 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 44 (193)
...-.++++|++|||||||++.+.+..
T Consensus 23 ~~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 23 KNNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 344568999999999999999998753
No 452
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.71 E-value=0.001 Score=48.87 Aligned_cols=26 Identities=31% Similarity=0.417 Sum_probs=21.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~ 43 (193)
.....+++.|+||+|||++++++...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 34457999999999999999998753
No 453
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.69 E-value=0.00091 Score=49.64 Aligned_cols=22 Identities=27% Similarity=0.336 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 029437 21 AKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~ 42 (193)
..|+++|+|||||||+.+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999875
No 454
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.69 E-value=0.00093 Score=52.47 Aligned_cols=26 Identities=19% Similarity=0.322 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~ 44 (193)
+.=+++|+|++|||||||++.+.+..
T Consensus 156 ~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 156 RGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 34479999999999999999998754
No 455
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.68 E-value=0.00059 Score=50.65 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=17.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~ 42 (193)
+.+.|+|.|++||||||+.+.|..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999988753
No 456
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.67 E-value=0.0027 Score=48.27 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=19.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~ 42 (193)
..+|+++|++|+||||+.+.+..
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHH
Confidence 35799999999999999987743
No 457
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.67 E-value=0.0023 Score=46.75 Aligned_cols=26 Identities=27% Similarity=0.401 Sum_probs=22.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~ 43 (193)
.....+++.|++|+|||++++.+...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 44568999999999999999998753
No 458
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.66 E-value=0.0011 Score=49.80 Aligned_cols=27 Identities=19% Similarity=0.215 Sum_probs=22.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcC
Q 029437 17 WQKEAKILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 17 ~~~~~~i~v~G~~~~GKssl~~~l~~~ 43 (193)
......+.|.|+||+|||++++.+...
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v~~v~~~ 68 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLVNDVMDE 68 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 345568999999999999999998643
No 459
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.66 E-value=0.0018 Score=50.66 Aligned_cols=25 Identities=24% Similarity=0.429 Sum_probs=21.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcC
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~ 43 (193)
..--|++.||||+|||+|++++.+.
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3456999999999999999999763
No 460
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.66 E-value=0.0011 Score=54.29 Aligned_cols=26 Identities=23% Similarity=0.413 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~ 44 (193)
..-.++|+|++|||||||++.+.+..
T Consensus 102 ~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 102 PGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCC
Confidence 34579999999999999999998754
No 461
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=96.66 E-value=0.026 Score=40.97 Aligned_cols=66 Identities=12% Similarity=-0.010 Sum_probs=43.3
Q ss_pred CEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCC
Q 029437 63 KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDI 133 (193)
Q Consensus 63 ~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~ 133 (193)
.+++.++|+|+.... .....+..+|.+++++... ..+...+......+- ... .+.++.+|+|+.+.
T Consensus 144 ~yD~viiD~pp~~~~--~~~~~l~~aD~vivv~~~~-~~s~~~~~~~~~~l~-~~~-~~~~~~vv~N~~~~ 209 (267)
T 3k9g_A 144 KYDYIVIDTNPSLDV--TLKNALLCSDYVIIPMTAE-KWAVESLDLFNFFVR-KLN-LFLPIFLIITRFKK 209 (267)
T ss_dssp TCSEEEEEECSSCSH--HHHHHHTTCSEEEEEEESC-TTHHHHHHHHHHHHH-TTT-CCCCEEEEEEEECT
T ss_pred CCCEEEEECcCCccH--HHHHHHHHCCeEEEEeCCC-hHHHHHHHHHHHHHH-HHh-ccCCEEEEEecccC
Confidence 467899999986432 2334456799999999984 444555555554442 222 35678899999943
No 462
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.66 E-value=0.0012 Score=49.17 Aligned_cols=25 Identities=32% Similarity=0.515 Sum_probs=21.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcC
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~ 43 (193)
..-.+++.|++|+|||++++.+...
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHHHHHHH
Confidence 4457999999999999999998763
No 463
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.64 E-value=0.0019 Score=52.60 Aligned_cols=26 Identities=23% Similarity=0.388 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~ 44 (193)
+.-.++++|++|||||||++.+.+--
T Consensus 368 ~Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 368 PGSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp TTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34479999999999999999987643
No 464
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.63 E-value=0.0011 Score=50.89 Aligned_cols=19 Identities=26% Similarity=0.513 Sum_probs=17.4
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 029437 23 ILFLGLDNAGKTTLLHMLK 41 (193)
Q Consensus 23 i~v~G~~~~GKssl~~~l~ 41 (193)
.+|+|+.|||||||+++++
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5689999999999999986
No 465
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.63 E-value=0.0011 Score=46.83 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~ 42 (193)
...|+|+|++||||||+.+.+..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998854
No 466
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.62 E-value=0.0017 Score=49.11 Aligned_cols=22 Identities=36% Similarity=0.584 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 029437 22 KILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~~ 43 (193)
++++.||+|+||||+++.+.+.
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999998754
No 467
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.62 E-value=0.0011 Score=54.17 Aligned_cols=26 Identities=23% Similarity=0.360 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~~ 44 (193)
..-.++|+|++|||||||++.+.+..
T Consensus 116 ~Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 116 DGMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCC
Confidence 44579999999999999999998754
No 468
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.60 E-value=0.0022 Score=48.42 Aligned_cols=22 Identities=36% Similarity=0.600 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 029437 22 KILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~~ 43 (193)
.+++.|++|+|||++++.+...
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999998754
No 469
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.59 E-value=0.00074 Score=44.51 Aligned_cols=24 Identities=8% Similarity=0.192 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~~ 43 (193)
...|++.|++|+|||++++.+...
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CCcEEEECCCCccHHHHHHHHHHh
Confidence 357999999999999999988754
No 470
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.58 E-value=0.0013 Score=53.07 Aligned_cols=25 Identities=32% Similarity=0.424 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKDER 44 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~~~ 44 (193)
.-.++|+|++|||||||++.+.+..
T Consensus 312 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 312 GEVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468999999999999999998754
No 471
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.58 E-value=0.0012 Score=48.63 Aligned_cols=24 Identities=21% Similarity=0.151 Sum_probs=20.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~ 42 (193)
..-.++|+|++|+|||||+..+..
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 334689999999999999998864
No 472
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.56 E-value=0.0026 Score=51.03 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 029437 21 AKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~ 42 (193)
-.+++.|++|+|||++++.+..
T Consensus 78 ~~lLL~GppGtGKTtla~~la~ 99 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQ 99 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999875
No 473
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.56 E-value=0.0013 Score=52.99 Aligned_cols=24 Identities=38% Similarity=0.430 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDER 44 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~~ 44 (193)
-.++|+|++|||||||++.+.+..
T Consensus 295 ei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 295 EIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999998754
No 474
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.55 E-value=0.002 Score=51.16 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~ 43 (193)
..++++|+||+|||+|++++.+.
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 45999999999999999998763
No 475
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.52 E-value=0.0015 Score=58.15 Aligned_cols=25 Identities=20% Similarity=0.401 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcC
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~ 43 (193)
+.-+|+|+|++|||||||++.+.+-
T Consensus 1104 ~Ge~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A 1104 PGQTLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp TTCEEEEECSTTSSTTSHHHHHTTS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcC
Confidence 4558999999999999999999764
No 476
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.52 E-value=0.0015 Score=53.45 Aligned_cols=25 Identities=32% Similarity=0.424 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKDER 44 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~~~ 44 (193)
.-.++|+|++|||||||++.+.+..
T Consensus 382 Gei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 382 GEVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999998754
No 477
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.50 E-value=0.0013 Score=50.81 Aligned_cols=26 Identities=19% Similarity=0.356 Sum_probs=21.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~ 43 (193)
...--|++.||||+|||+|++++.+.
T Consensus 180 ~~prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 180 AQPKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCCCceEEeCCCCCCHHHHHHHHHHh
Confidence 34457999999999999999999763
No 478
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.49 E-value=0.002 Score=48.43 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=21.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~ 42 (193)
....+++.|+||+|||++++++..
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH
Confidence 446799999999999999999865
No 479
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.48 E-value=0.0021 Score=44.87 Aligned_cols=25 Identities=20% Similarity=0.198 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKDER 44 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~~~ 44 (193)
...|+|+|++|+|||+|...|...-
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 4568999999999999999987543
No 480
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.46 E-value=0.0021 Score=48.33 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=21.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~ 42 (193)
..-.+++.|+||+|||+|++++..
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCceEEEECCCCccHHHHHHHHHH
Confidence 345799999999999999999875
No 481
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.45 E-value=0.0017 Score=46.42 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=19.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLK 41 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~ 41 (193)
..--++|+|++|+|||||+.++.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 44468999999999999987764
No 482
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.44 E-value=0.0029 Score=49.76 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=20.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~ 42 (193)
.-.+++.|++|+|||+|++.+.+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~ 152 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGN 152 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 34699999999999999999875
No 483
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.41 E-value=0.0038 Score=47.55 Aligned_cols=23 Identities=22% Similarity=0.340 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~ 42 (193)
.-.+++.|+||+|||++++.+..
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999864
No 484
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.41 E-value=0.0018 Score=47.95 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=20.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~ 42 (193)
...+++.|+||+|||++++.+..
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999864
No 485
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.41 E-value=0.0019 Score=48.09 Aligned_cols=23 Identities=39% Similarity=0.498 Sum_probs=19.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLK 41 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~ 41 (193)
..-.++++|++|+||||++..+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 34579999999999999998874
No 486
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.41 E-value=0.0031 Score=47.47 Aligned_cols=25 Identities=40% Similarity=0.478 Sum_probs=21.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcC
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~ 43 (193)
....+++.|++|+|||++++.+...
T Consensus 54 ~~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 54 CLDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 3456999999999999999998653
No 487
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.38 E-value=0.0037 Score=55.65 Aligned_cols=25 Identities=20% Similarity=0.417 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcC
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~~ 43 (193)
+.-.++|+|++|||||||++.+.+-
T Consensus 443 ~G~~vaivG~sGsGKSTll~ll~~~ 467 (1321)
T 4f4c_A 443 AGQTVALVGSSGCGKSTIISLLLRY 467 (1321)
T ss_dssp TTCEEEEEECSSSCHHHHHHHHTTS
T ss_pred CCcEEEEEecCCCcHHHHHHHhccc
Confidence 4457999999999999999998864
No 488
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.38 E-value=0.0024 Score=43.88 Aligned_cols=21 Identities=29% Similarity=0.358 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 029437 23 ILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 23 i~v~G~~~~GKssl~~~l~~~ 43 (193)
++|+|.+|||||++..++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999998854
No 489
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.38 E-value=0.0029 Score=50.11 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~~ 43 (193)
.-+++++|+||+|||++++.+...
T Consensus 201 ~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999988654
No 490
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.38 E-value=0.002 Score=52.64 Aligned_cols=23 Identities=30% Similarity=0.586 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 029437 22 KILFLGLDNAGKTTLLHMLKDER 44 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~~~~ 44 (193)
.++|+|++|||||||++.+.+..
T Consensus 380 iv~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 380 ILVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47999999999999999998764
No 491
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.37 E-value=0.0023 Score=47.88 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q 029437 20 EAKILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 20 ~~~i~v~G~~~~GKssl~~~l~~~ 43 (193)
..-|+|+||+|||||+|...+...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 346899999999999999998643
No 492
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.37 E-value=0.004 Score=49.12 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=20.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~ 42 (193)
..-.+++.||||+|||++...+..
T Consensus 62 ~~~~iLl~GppGtGKT~la~ala~ 85 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALALAIAQ 85 (456)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCcCCHHHHHHHHHH
Confidence 345799999999999999998854
No 493
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.36 E-value=0.0018 Score=49.28 Aligned_cols=26 Identities=31% Similarity=0.290 Sum_probs=21.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~ 43 (193)
...--+.|+|++|+|||||+..+...
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34456899999999999999998754
No 494
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.36 E-value=0.0025 Score=49.67 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=20.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 029437 19 KEAKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~v~G~~~~GKssl~~~l~~ 42 (193)
...-|+++|++||||||+.+++..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345688999999999999999875
No 495
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.35 E-value=0.0012 Score=53.29 Aligned_cols=26 Identities=35% Similarity=0.576 Sum_probs=22.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~ 43 (193)
.+...|+|+|++|||||||++.+.+.
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred ccceEEEEECCCCChHHHHHHHHHHh
Confidence 45578999999999999999998764
No 496
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.33 E-value=0.0024 Score=43.52 Aligned_cols=23 Identities=35% Similarity=0.421 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 029437 21 AKILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~~ 43 (193)
.=+++.|++|+||||+...+...
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 45899999999999999998754
No 497
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.32 E-value=0.0024 Score=44.72 Aligned_cols=20 Identities=30% Similarity=0.547 Sum_probs=17.3
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 029437 22 KILFLGLDNAGKTTLLHMLK 41 (193)
Q Consensus 22 ~i~v~G~~~~GKssl~~~l~ 41 (193)
-.+|+|+.|+||||++.++.
T Consensus 25 ~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHH
Confidence 35788999999999999874
No 498
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.31 E-value=0.0015 Score=47.59 Aligned_cols=26 Identities=35% Similarity=0.404 Sum_probs=21.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLKDE 43 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~~~ 43 (193)
++...|+|.|.+||||||+++.|...
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHh
Confidence 34568999999999999999988653
No 499
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.29 E-value=0.0028 Score=44.81 Aligned_cols=24 Identities=25% Similarity=0.238 Sum_probs=20.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHh
Q 029437 18 QKEAKILFLGLDNAGKTTLLHMLK 41 (193)
Q Consensus 18 ~~~~~i~v~G~~~~GKssl~~~l~ 41 (193)
|+..-|++.|++||||||+++.+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~ 27 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLA 27 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHH
Confidence 445679999999999999999875
No 500
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.29 E-value=0.0026 Score=48.12 Aligned_cols=22 Identities=27% Similarity=0.321 Sum_probs=19.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 029437 21 AKILFLGLDNAGKTTLLHMLKD 42 (193)
Q Consensus 21 ~~i~v~G~~~~GKssl~~~l~~ 42 (193)
..|+|+|++|||||||...|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4699999999999999988753
Done!