BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029438
(193 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B7FA90|HPT1_ORYSJ Probable homogentisate phytyltransferase 1, chloroplastic OS=Oryza
sativa subsp. japonica GN=HPT1 PE=2 SV=1
Length = 404
Score = 174 bits (441), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 86/192 (44%), Positives = 124/192 (64%), Gaps = 1/192 (0%)
Query: 3 GSPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLC-LVITMGLTGLPFYMHTQQYVL 61
GS PL L + F+ G AYS+ LPFLRWK +A LC L + + L F++H Q +V
Sbjct: 213 GSQPLFLALFISFILGTAYSINLPFLRWKRSAVVAALCILAVRAVIVQLAFFLHIQTFVF 272
Query: 62 GRPFVITRPLILMGAIMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNT 121
RP V TRPLI A M+ F+ V L KD+PD+EGD+ FG+ + V LG++KVF +CV
Sbjct: 273 RRPAVFTRPLIFATAFMTFFSVVIALFKDIPDIEGDRIFGIKSFSVRLGQKKVFWICVGL 332
Query: 122 MLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKKVDLDNFESTFGFYMLIWKL 181
+ + Y A++ GA+S+ + +K T++GH+ILA ILW +S+ +DL + + FYM IWKL
Sbjct: 333 LEMAYCVAILMGATSACLWSKYATVVGHAILAAILWNRSRSIDLTSKTAITSFYMFIWKL 392
Query: 182 TFVEYILIHFLR 193
+ EY+LI +R
Sbjct: 393 FYAEYLLIPLVR 404
>sp|Q8VWJ1|HPT1_ARATH Homogentisate phytyltransferase 1, chloroplastic OS=Arabidopsis
thaliana GN=VTE2-1 PE=2 SV=1
Length = 393
Score = 172 bits (435), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 83/192 (43%), Positives = 121/192 (63%), Gaps = 1/192 (0%)
Query: 3 GSPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLC-LVITMGLTGLPFYMHTQQYVL 61
GS PL + F+ G AYS+ LP LRWK +A +C L + + + FY+H Q +V
Sbjct: 202 GSWPLFWALFVSFMLGTAYSINLPLLRWKRFALVAAMCILAVRAIIVQIAFYLHIQTHVF 261
Query: 62 GRPFVITRPLILMGAIMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNT 121
GRP + TRPLI A MS F+ V L KD+PD+EGDK FG+ + V LG+++VF CV
Sbjct: 262 GRPILFTRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQKRVFWTCVTL 321
Query: 122 MLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKKVDLDNFESTFGFYMLIWKL 181
+ + Y A++ GA+S F+ +K+++++GH ILA LW ++K VDL + YM IWKL
Sbjct: 322 LQMAYAVAILVGATSPFIWSKVISVVGHVILATTLWARAKSVDLSSKTEITSCYMFIWKL 381
Query: 182 TFVEYILIHFLR 193
+ EY+L+ FL+
Sbjct: 382 FYAEYLLLPFLK 393
>sp|B1B3P3|N8DT1_SOPFL Naringenin 8-dimethylallyltransferase 1, chloroplastic OS=Sophora
flavescens GN=N8DT-1 PE=1 SV=1
Length = 410
Score = 151 bits (381), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 76/192 (39%), Positives = 116/192 (60%), Gaps = 1/192 (0%)
Query: 3 GSPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGLT-GLPFYMHTQQYVL 61
S PL + + AY++ LP LRWK + + + + + +T L F++H Q V
Sbjct: 219 DSWPLFWTVFISCMVASAYNVDLPLLRWKKYPVLTAINFIADVAVTRSLGFFLHMQTCVF 278
Query: 62 GRPFVITRPLILMGAIMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNT 121
RP RPLI AI+SI+A V L KD+PD+EGD+KFG+ +L + LG ++VF +CV+
Sbjct: 279 KRPTTFPRPLIFCTAIVSIYAIVIALFKDIPDMEGDEKFGIQSLSLRLGPKRVFWICVSL 338
Query: 122 MLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKKVDLDNFESTFGFYMLIWKL 181
+ + YG ++ GA+S + +K++T++GH++LA +LW +K VDL + FYM IWKL
Sbjct: 339 LEMTYGVTILVGATSPILWSKIITVLGHAVLASVLWYHAKSVDLTSNVVLHSFYMFIWKL 398
Query: 182 TFVEYILIHFLR 193
EY LI R
Sbjct: 399 HTAEYFLIPLFR 410
>sp|B9A1Q4|G4DT_SOYBN Glycinol 4-dimethylallyltransferase OS=Glycine max GN=G4DT PE=1
SV=1
Length = 409
Score = 148 bits (373), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 75/194 (38%), Positives = 119/194 (61%), Gaps = 1/194 (0%)
Query: 1 MSGSPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGLT-GLPFYMHTQQY 59
++GS PL+ N ++ AYS+ +P LRWK + F+A +C++ T L + ++ H Q
Sbjct: 216 ITGSWPLICNLVVIASSWTAYSIDVPLLRWKRYPFVAAMCMISTWALALPISYFHHMQTV 275
Query: 60 VLGRPFVITRPLILMGAIMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCV 119
VL RP R L + A M+ ++ L KD+PDVEGDK+ G+++ V LG+++ F +CV
Sbjct: 276 VLKRPIGFPRSLGFLVAFMTFYSLGLALSKDIPDVEGDKEHGIDSFAVRLGQKRAFWICV 335
Query: 120 NTMLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKKVDLDNFESTFGFYMLIW 179
+ + +G ++AGAS S K+ T +G+++LA ILW Q+K VDL + ST FYM IW
Sbjct: 336 SFFEMAFGVGILAGASCSHFWTKIFTGMGNAVLASILWYQAKSVDLSDKASTGSFYMFIW 395
Query: 180 KLTFVEYILIHFLR 193
KL + + L+ +R
Sbjct: 396 KLLYAGFFLMALIR 409
>sp|Q1ACB3|HPT2_ARATH Homogentisate phytyltransferase 2, chloroplastic OS=Arabidopsis
thaliana GN=HPT2 PE=2 SV=1
Length = 386
Score = 78.6 bits (192), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 87/178 (48%), Gaps = 6/178 (3%)
Query: 18 GCAYSLPLPFLRWKSHTFMAPLCLVITMG-LTGLPFYMHTQQYVLGRPFVITRPLILMGA 76
G YS+P LR K A L + G L Y H + LG PF + P+ + +
Sbjct: 212 GTIYSVPP--LRMKRFPVAAFLIIATVRGFLLNFGVY-HATRAALGLPFQWSAPVAFITS 268
Query: 77 IMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGASS 136
+++FA V + KDLPDVEGD+KF ++TL LG + L +LV Y A+
Sbjct: 269 FVTLFALVIAITKDLPDVEGDRKFQISTLATKLGVRNIAFLGSGLLLVNYVSAISLAFYM 328
Query: 137 SFMINKLVTIIGHSILALILWIQSKKVDLDNF--ESTFGFYMLIWKLTFVEYILIHFL 192
+ + I H ILA L Q+ ++ N+ E+ G+Y IW L + EY+L FL
Sbjct: 329 PQVFRGSLMIPAHVILASGLIFQTWVLEKANYTKEAISGYYRFIWNLFYAEYLLFPFL 386
>sp|Q0D576|HPT2_ORYSJ Probable homogentisate phytyltransferase 2, chloroplastic OS=Oryza
sativa subsp. japonica GN=HPT2 PE=3 SV=2
Length = 379
Score = 63.5 bits (153), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 82/173 (47%), Gaps = 6/173 (3%)
Query: 18 GCAYSLPLPFLRWKSHTFMAPLCLVITMG-LTGLPFYMHTQQYVLGRPFVITRPLILMGA 76
G YS+P PF R K + A L + G L Y T+ LG F + P+ +
Sbjct: 205 GTIYSVP-PF-RLKRYPVAAFLIIATVRGFLLNFGVYYATRA-ALGLTFQWSSPVAFITC 261
Query: 77 IMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGASS 136
+++FA V + KDLPDVEGD+K+ ++TL LG + L ++ Y A+
Sbjct: 262 FVTLFALVIAITKDLPDVEGDRKYQISTLATKLGVRNIAFLGSGLLIANYVAAIAVAFLM 321
Query: 137 SFMINKLVTIIGHSILALILWIQSKKVDLDNF--ESTFGFYMLIWKLTFVEYI 187
+ V + H+ LA+ + Q+ ++ + ++ +Y IW L + EYI
Sbjct: 322 PQAFRRTVMVPVHAALAVGIIFQTWVLEQAKYTKDAISQYYRFIWNLFYAEYI 374
>sp|Q2NGM1|DGGGP_METST Digeranylgeranylglyceryl phosphate synthase OS=Methanosphaera
stadtmanae (strain DSM 3091) GN=Msp_0634 PE=3 SV=1
Length = 272
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 17/93 (18%)
Query: 31 KSHTFMAPLCLVITMGLTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFV----NG 86
K F+ LC+ I GLT +V G +IT+ + L G I+ FAF+
Sbjct: 120 KQRCFIGNLCVAILTGLT----------FVFGG--LITKDVNL-GFILGFFAFLMTLSRE 166
Query: 87 LLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCV 119
++KD+ D+EGDKK +TL ++ G +K L V
Sbjct: 167 IIKDIEDIEGDKKEDAHTLPIIYGTKKAVMLAV 199
>sp|A7I9E7|DGGGP_METB6 Digeranylgeranylglyceryl phosphate synthase OS=Methanoregula boonei
(strain 6A8) GN=Mboo_1843 PE=3 SV=1
Length = 279
Score = 38.9 bits (89), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 7/51 (13%)
Query: 87 LLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGASSS 137
LLKD D+EGD+ G +TL + +G K T L+ + C A A+S+
Sbjct: 172 LLKDAEDIEGDRAHGADTLAIRIGVRK-------TALIAFACTAFAIAASA 215
>sp|O57753|DGGGP_PYRHO Digeranylgeranylglyceryl phosphate synthase OS=Pyrococcus
horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 /
NBRC 100139 / OT-3) GN=PH0027 PE=3 SV=1
Length = 277
Score = 36.6 bits (83), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 21/27 (77%)
Query: 87 LLKDLPDVEGDKKFGMNTLCVLLGKEK 113
++KD+ D EGDK+ G TL +++GK+K
Sbjct: 172 IMKDIEDFEGDKRLGARTLPIMIGKKK 198
>sp|Q8TZM7|DGGGP_PYRFU Digeranylgeranylglyceryl phosphate synthase OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
GN=PF1963 PE=3 SV=1
Length = 277
Score = 35.8 bits (81), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 21/28 (75%)
Query: 87 LLKDLPDVEGDKKFGMNTLCVLLGKEKV 114
++KD+ D+EGDK G TL +++G++K
Sbjct: 172 IMKDIEDIEGDKALGARTLPIIIGEKKA 199
>sp|Q4J8K2|DGGGP_SULAC Digeranylgeranylglyceryl phosphate synthase OS=Sulfolobus
acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 /
NBRC 15157 / NCIMB 11770) GN=Saci_1565 PE=3 SV=1
Length = 275
Score = 35.4 bits (80), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 81 FAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEK 113
F +K + D+EGDK+ G+NTL V LG++
Sbjct: 166 FTLSREFVKGIEDIEGDKRNGVNTLAVKLGEKS 198
>sp|Q9V2P5|DGGGP_PYRAB Digeranylgeranylglyceryl phosphate synthase OS=Pyrococcus abyssi
(strain GE5 / Orsay) GN=PYRAB00300 PE=3 SV=2
Length = 277
Score = 35.4 bits (80), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 87 LLKDLPDVEGDKKFGMNTLCVLLGKEK 113
++KD+ D+EGD K G TL +++GK +
Sbjct: 172 IMKDIEDIEGDMKMGAKTLPIIIGKRR 198
>sp|C5A1J7|DGGGP_THEGJ Digeranylgeranylglyceryl phosphate synthase OS=Thermococcus
gammatolerans (strain DSM 15229 / JCM 11827 / EJ3)
GN=TGAM_1764 PE=3 SV=1
Length = 276
Score = 35.0 bits (79), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 87 LLKDLPDVEGDKKFGMNTLCVLLGKEK 113
++KD+ DVEGD K G TL ++LG+ K
Sbjct: 172 IVKDIEDVEGDLKKGAKTLPIILGRRK 198
>sp|Q18J00|DGGGP_HALWD Digeranylgeranylglyceryl phosphate synthase OS=Haloquadratum
walsbyi (strain DSM 16790) GN=HQ_1884A PE=3 SV=1
Length = 286
Score = 34.7 bits (78), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 25/38 (65%)
Query: 87 LLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLV 124
++KD+ D++GD+K G+ TL +++G + + +LV
Sbjct: 180 IIKDIEDLDGDRKEGLQTLPIVIGVTPAYRVATGVLLV 217
>sp|P39582|MENA_BACSU Probable 1,4-dihydroxy-2-naphthoate octaprenyltransferase
OS=Bacillus subtilis (strain 168) GN=menA PE=3 SV=1
Length = 311
Score = 33.9 bits (76), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 10/78 (12%)
Query: 50 LPFYMHTQQYVLGRPFVITRPL-ILMGAIMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVL 108
+ F++ T + + + +I+ P+ IL+GAI L ++ D+E DKK G TL +L
Sbjct: 173 ISFFIQTDKINM-QSILISIPIAILVGAI--------NLSNNIRDIEEDKKGGRKTLAIL 223
Query: 109 LGKEKVFPLCVNTMLVGY 126
+G + L + V Y
Sbjct: 224 MGHKGAVTLLAASFAVAY 241
>sp|Q5W6H5|CHLG_ORYSJ Chlorophyll synthase, chloroplastic OS=Oryza sativa subsp. japonica
GN=CHLG PE=2 SV=1
Length = 376
Score = 33.5 bits (75), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 49 GLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVL 108
GLP++ Q + G +T ++++ ++ SI ++ D VEGD+ G+ +L V
Sbjct: 238 GLPWW--AGQALFG---TLTPDIVVLTSLYSIAGLGIAIVNDFKSVEGDRALGLQSLPVA 292
Query: 109 LGKEKVFPLCVNTM 122
G E +CV +
Sbjct: 293 FGMETAKWICVGAI 306
>sp|Q12VF3|DGGGP_METBU Digeranylgeranylglyceryl phosphate synthase OS=Methanococcoides
burtonii (strain DSM 6242) GN=Mbur_1679 PE=3 SV=1
Length = 281
Score = 33.5 bits (75), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 87 LLKDLPDVEGDKKFGMNTLCVLLGKEKV 114
++KD+ D+ GDKK G TL +L+G +K
Sbjct: 180 IVKDVEDIVGDKKDGARTLPILIGAKKA 207
>sp|O27170|DGGGP_METTH Digeranylgeranylglyceryl phosphate synthase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_1098 PE=1 SV=1
Length = 281
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 48/107 (44%), Gaps = 13/107 (12%)
Query: 22 SLPLPFLRWKSHTFMAPLCLV--ITMG-LTGLPFYMHTQQYVLGRPFVITRPLILMGAIM 78
SL + + W+ + CLV IT+ LTGL F VLG R IL+G
Sbjct: 109 SLLMVYYAWR----LKKRCLVGNITISFLTGLSFVFG--GIVLGE----VRASILLGFYA 158
Query: 79 SIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVG 125
+ ++KD+ DVEGD+ G TL + G L + ML+
Sbjct: 159 FLMTMAREIVKDMEDVEGDRAEGATTLPITHGMRISGVLAASFMLIA 205
>sp|Q4WWL0|SRB8_ASPFU Mediator of RNA polymerase II transcription subunit 12 OS=Neosartorya
fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 /
FGSC A1100) GN=srb8 PE=3 SV=2
Length = 1617
Score = 33.1 bits (74), Expect = 1.3, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 85 NGLLKDLPDVEGDKKFGMNTLCVLLGKEKVF-PLCVNTMLVGYGCALIAGASSSFMINKL 143
N L+K L G KF +N +C L + F P +TM+V + C L+ ++ + L
Sbjct: 961 NVLIKQLESSGGHAKFSVNEICRYLSYLRPFHPKRFDTMIVRWVCGLLRSSTGGILSQVL 1020
Query: 144 VTIIG 148
+IG
Sbjct: 1021 PPLIG 1025
>sp|Q9Z5D6|BCHG_RHOS4 Bacteriochlorophyll synthase 33 kDa chain OS=Rhodobacter
sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM
158) GN=bchG PE=4 SV=1
Length = 302
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 17/107 (15%)
Query: 49 GLPFYMHTQQYVLGRP--FVITRPLILMGAIMSIFAFVNGLLKDLPDVEGDKKFGMNTLC 106
GLP++ G P F++T L+ I L D +EGD++ G+ +L
Sbjct: 158 GLPWFTGAAVLSAGAPSFFIVTVALLYAFGAHGIMT-----LNDFKALEGDRQHGVRSLP 212
Query: 107 VLLGKEKVFPLC----------VNTMLVGYGCALIAGASSSFMINKL 143
V+LG E L V T+LV +G + AG ++ ++ +L
Sbjct: 213 VMLGPEVAAKLACTVMAMAQILVITLLVIWGKPIHAGIITALLVAQL 259
>sp|Q8TWS9|DGGGP_METKA Digeranylgeranylglyceryl phosphate synthase OS=Methanopyrus
kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC
100938) GN=MK0953 PE=3 SV=1
Length = 271
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 84 VNGLLKDLPDVEGDKKFGMNTLCVLLGK 111
V +LKDL DVEGD G+ TL + G+
Sbjct: 165 VREILKDLEDVEGDAALGLKTLPIAYGE 192
>sp|Q5JDN5|DGGGP_PYRKO Digeranylgeranylglyceryl phosphate synthase OS=Pyrococcus
kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
GN=TK1957 PE=3 SV=1
Length = 277
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 20/27 (74%)
Query: 87 LLKDLPDVEGDKKFGMNTLCVLLGKEK 113
++KD+ D+EGD G TL +L+G+++
Sbjct: 172 VIKDIEDIEGDMAKGAKTLPILIGRKR 198
>sp|Q3INH7|DGGGP_NATPD Digeranylgeranylglyceryl phosphate synthase OS=Natronomonas
pharaonis (strain DSM 2160 / ATCC 35678) GN=NP_4470A
PE=3 SV=1
Length = 277
Score = 32.3 bits (72), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 21/27 (77%)
Query: 87 LLKDLPDVEGDKKFGMNTLCVLLGKEK 113
++KD+ D++GD+ G+ TL +++G+ +
Sbjct: 173 IVKDVEDIDGDRAEGLRTLPIVIGERR 199
>sp|Q9HRP0|DGGGP_HALSA Digeranylgeranylglyceryl phosphate synthase OS=Halobacterium
salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
GN=VNG_0610G PE=3 SV=2
Length = 276
Score = 32.0 bits (71), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 83 FVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVF 115
F ++KD+ D+ GD+ G+ TL V++G ++
Sbjct: 169 FAREVIKDVEDLAGDRAAGLRTLPVVVGHQRAL 201
>sp|B0R3S1|DGGGP_HALS3 Digeranylgeranylglyceryl phosphate synthase OS=Halobacterium
salinarum (strain ATCC 29341 / DSM 671 / R1) GN=OE_1921R
PE=3 SV=1
Length = 276
Score = 32.0 bits (71), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 83 FVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVF 115
F ++KD+ D+ GD+ G+ TL V++G ++
Sbjct: 169 FAREVIKDVEDLAGDRAAGLRTLPVVVGHQRAL 201
>sp|Q9M3W5|CHLG_AVESA Chlorophyll synthase, chloroplastic OS=Avena sativa GN=CHLG PE=1
SV=1
Length = 378
Score = 32.0 bits (71), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Query: 49 GLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVL 108
GLP++ Q + G +T ++++ + SI ++ D +EGD+ G+ +L V
Sbjct: 240 GLPWWAG--QALFG---TLTPDIVVLTCLYSIAGLGIAIVNDFKSIEGDRTLGLQSLPVA 294
Query: 109 LGKEKVFPLCVNTM 122
G E +CV +
Sbjct: 295 FGMETAKWICVGAI 308
>sp|Q38833|CHLG_ARATH Chlorophyll synthase, chloroplastic OS=Arabidopsis thaliana GN=CHLG
PE=2 SV=1
Length = 387
Score = 31.6 bits (70), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 28/57 (49%)
Query: 66 VITRPLILMGAIMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTM 122
+T ++++ + SI ++ D VEGD+ G+ +L V G E +CV +
Sbjct: 261 TLTPDVVVLTLLYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGTETAKWICVGAI 317
>sp|A3CW74|DGGGP_METMJ Digeranylgeranylglyceryl phosphate synthase OS=Methanoculleus
marisnigri (strain ATCC 35101 / DSM 1498 / JR1)
GN=Memar_1697 PE=3 SV=1
Length = 279
Score = 31.2 bits (69), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 10/87 (11%)
Query: 53 YMHTQQYVLGRPFVITRPLIL---MGAIMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLL 109
Y+ ++ G F L+ + AI + LLKD DV+GD G TL +++
Sbjct: 135 YLAGSVFLFGGAFAGIEGLVRNLSLAAITFLATIARELLKDAEDVDGDAAGGARTLPMIV 194
Query: 110 GKEKVFPLCVNTMLVGYGCALIAGASS 136
G K T + + CA A A+S
Sbjct: 195 GVRK-------TGIFAFACACGAVAAS 214
>sp|B6YW76|DGGGP_THEON Digeranylgeranylglyceryl phosphate synthase OS=Thermococcus
onnurineus (strain NA1) GN=TON_1950 PE=3 SV=1
Length = 276
Score = 31.2 bits (69), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 87 LLKDLPDVEGDKKFGMNTLCVLLGKEK 113
++KD+ DVEGD G TL ++ GK++
Sbjct: 172 VIKDIEDVEGDMAKGAKTLPIIWGKKR 198
>sp|A2SRL0|DGGGP_METLZ Digeranylgeranylglyceryl phosphate synthase OS=Methanocorpusculum
labreanum (strain ATCC 43576 / DSM 4855 / Z)
GN=Mlab_0795 PE=3 SV=1
Length = 282
Score = 30.8 bits (68), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%)
Query: 87 LLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALI 131
LLKD D+EGD+ G TL + +G K L V +L C+ +
Sbjct: 172 LLKDAEDIEGDRLGGARTLPMQIGVRKTSVLAVIFVLFAVLCSFV 216
>sp|A0B8A0|DGGGP_METTP Digeranylgeranylglyceryl phosphate synthase OS=Methanosaeta
thermophila (strain DSM 6194 / PT) GN=Mthe_1142 PE=3
SV=1
Length = 267
Score = 30.4 bits (67), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 87 LLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVG 125
++KD+ D+ GD G TL +GK K F L ++V
Sbjct: 169 IVKDIEDLPGDLAHGAKTLPAFIGKRKSFVLASLVLIVA 207
>sp|P44739|MENA_HAEIN 1,4-dihydroxy-2-naphthoate octaprenyltransferase OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=menA PE=3 SV=1
Length = 308
Score = 30.0 bits (66), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 36 MAPLCLVITMGLTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFVNGLLKDLPDVE 95
+ + +++ GL G+ + Q + + ++ P I G + S +N +L D+E
Sbjct: 157 LGDISVLVFFGLLGVGGTYYLQTHSIDSHIIL--PAIGSGLLASAVLNIN----NLRDIE 210
Query: 96 GDKKFGMNTLCVLLGKEK 113
D K G NTL V LG K
Sbjct: 211 QDAKAGKNTLAVRLGAYK 228
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.332 0.147 0.471
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,748,319
Number of Sequences: 539616
Number of extensions: 2745335
Number of successful extensions: 6532
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 6493
Number of HSP's gapped (non-prelim): 55
length of query: 193
length of database: 191,569,459
effective HSP length: 111
effective length of query: 82
effective length of database: 131,672,083
effective search space: 10797110806
effective search space used: 10797110806
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 58 (26.9 bits)