Query 029438
Match_columns 193
No_of_seqs 191 out of 454
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 12:55:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029438.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029438hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02878 homogentisate phytylt 100.0 8.6E-58 1.9E-62 398.5 22.5 192 2-193 88-280 (280)
2 PRK12887 ubiA tocopherol phyty 100.0 1.1E-47 2.4E-52 339.0 22.3 188 3-193 118-306 (308)
3 PRK13595 ubiA prenyltransferas 99.9 1.8E-24 4E-29 190.4 17.6 162 4-188 117-278 (292)
4 PRK13105 ubiA prenyltransferas 99.8 8.4E-19 1.8E-23 153.9 20.5 121 3-133 103-224 (282)
5 PRK12872 ubiA prenyltransferas 99.8 3E-18 6.6E-23 148.2 19.5 126 3-137 102-229 (285)
6 TIGR01476 chlor_syn_BchG bacte 99.8 1.2E-18 2.6E-23 151.3 16.8 171 5-188 106-276 (283)
7 PRK12392 bacteriochlorophyll c 99.8 2E-18 4.4E-23 154.4 16.1 156 5-174 125-280 (331)
8 PLN00012 chlorophyll synthetas 99.8 6.6E-18 1.4E-22 153.4 19.6 167 5-184 197-363 (375)
9 TIGR02056 ChlG chlorophyll syn 99.8 4.5E-18 9.7E-23 150.2 17.7 168 4-185 127-295 (306)
10 PRK07566 bacteriochlorophyll/c 99.8 6.1E-17 1.3E-21 143.4 17.5 121 4-132 131-252 (314)
11 PRK05951 ubiA prenyltransferas 99.7 3.5E-16 7.7E-21 137.4 20.0 174 4-188 115-289 (296)
12 PRK06080 1,4-dihydroxy-2-napht 99.7 3.8E-16 8.3E-21 136.0 19.6 123 4-136 112-235 (293)
13 PF01040 UbiA: UbiA prenyltran 99.7 4.2E-16 9E-21 130.6 17.8 102 4-116 91-193 (257)
14 PRK12882 ubiA prenyltransferas 99.7 6.6E-16 1.4E-20 133.8 18.4 151 6-171 106-257 (276)
15 PRK13591 ubiA prenyltransferas 99.7 1.7E-16 3.6E-21 140.9 14.7 148 11-167 125-277 (307)
16 TIGR02235 menA_cyano-plnt 1,4- 99.7 1.6E-15 3.4E-20 133.2 20.3 125 3-137 104-229 (285)
17 PRK07419 1,4-dihydroxy-2-napht 99.7 8.4E-16 1.8E-20 136.2 17.9 124 3-136 117-241 (304)
18 PRK12884 ubiA prenyltransferas 99.7 1.5E-15 3.2E-20 131.4 18.3 117 4-134 103-220 (279)
19 COG0382 UbiA 4-hydroxybenzoate 99.7 3.3E-15 7.2E-20 130.3 20.0 167 6-189 117-284 (289)
20 PLN02922 prenyltransferase 99.7 2.8E-15 6E-20 133.4 19.7 131 3-137 121-256 (315)
21 TIGR00751 menA 1,4-dihydroxy-2 99.7 4.7E-15 1E-19 130.1 18.5 119 6-134 110-229 (284)
22 PRK13387 1,4-dihydroxy-2-napht 99.7 1.1E-14 2.4E-19 129.5 18.4 129 3-135 112-255 (317)
23 PRK12875 ubiA prenyltransferas 99.6 1.5E-14 3.3E-19 126.9 15.9 113 8-133 116-229 (282)
24 TIGR01475 ubiA_other putative 99.6 5.9E-14 1.3E-18 122.1 18.9 146 12-172 112-258 (282)
25 PRK09573 (S)-2,3-di-O-geranylg 99.6 1.4E-13 3E-18 119.6 18.3 110 5-129 104-214 (279)
26 PRK13106 ubiA prenyltransferas 99.5 2.7E-13 5.8E-18 120.0 16.3 153 12-180 125-283 (300)
27 PLN02809 4-hydroxybenzoate non 99.5 4.2E-13 9.1E-18 118.1 17.2 155 7-178 116-272 (289)
28 PRK12883 ubiA prenyltransferas 99.5 6.4E-13 1.4E-17 115.2 17.2 102 5-121 104-206 (277)
29 PRK12847 ubiA 4-hydroxybenzoat 99.5 1E-12 2.2E-17 114.6 17.7 149 5-171 114-263 (285)
30 PRK12888 ubiA prenyltransferas 99.5 2.5E-12 5.4E-17 112.8 19.3 148 11-175 114-263 (284)
31 TIGR01474 ubiA_proteo 4-hydrox 99.5 2.9E-12 6.3E-17 111.8 17.6 150 4-171 108-258 (281)
32 PRK12886 ubiA prenyltransferas 99.5 6.1E-12 1.3E-16 110.7 18.9 145 8-168 114-258 (291)
33 PRK12876 ubiA prenyltransferas 99.5 9.7E-12 2.1E-16 110.3 20.2 174 9-193 120-299 (300)
34 PRK12895 ubiA prenyltransferas 99.5 5.9E-12 1.3E-16 110.9 18.3 149 16-179 116-267 (286)
35 PRK12874 ubiA prenyltransferas 99.4 1.1E-11 2.4E-16 109.0 18.3 146 12-174 123-269 (291)
36 PRK12870 ubiA 4-hydroxybenzoat 99.4 4.7E-12 1E-16 111.3 15.6 152 10-179 120-275 (290)
37 PRK12848 ubiA 4-hydroxybenzoat 99.4 2.2E-11 4.8E-16 106.3 18.0 151 8-176 114-266 (282)
38 PRK13592 ubiA prenyltransferas 99.3 4.3E-11 9.2E-16 106.1 16.2 110 12-129 115-233 (299)
39 PRK12878 ubiA 4-hydroxybenzoat 99.3 1.3E-10 2.7E-15 103.4 18.6 154 4-175 140-294 (314)
40 PRK12871 ubiA prenyltransferas 99.3 1.2E-10 2.7E-15 102.9 16.9 101 67-171 173-273 (297)
41 COG1575 MenA 1,4-dihydroxy-2-n 99.2 8.5E-10 1.8E-14 98.0 18.4 168 4-185 120-295 (303)
42 PRK12869 ubiA protoheme IX far 99.2 1.2E-09 2.5E-14 95.4 18.4 155 13-185 115-270 (279)
43 PRK04375 protoheme IX farnesyl 99.1 1.1E-08 2.3E-13 90.0 16.5 149 17-181 127-278 (296)
44 PRK12873 ubiA prenyltransferas 99.0 9.5E-09 2.1E-13 91.1 16.0 156 9-180 121-280 (294)
45 TIGR01473 cyoE_ctaB protoheme 99.0 2.5E-08 5.4E-13 86.8 18.1 159 8-181 108-270 (280)
46 PRK13362 protoheme IX farnesyl 98.9 1.8E-07 3.9E-12 83.1 18.6 90 17-119 130-220 (306)
47 PLN02776 prenyltransferase 97.1 0.11 2.3E-06 47.4 18.7 91 18-122 113-206 (341)
48 KOG4581 Predicted membrane pro 96.5 0.0091 2E-07 52.3 6.9 77 83-162 243-319 (359)
49 PRK08238 hypothetical protein; 96.0 0.055 1.2E-06 51.1 9.9 82 5-102 295-377 (479)
50 PRK12324 phosphoribose diphosp 94.3 0.18 3.8E-06 45.0 7.3 37 5-46 115-151 (295)
51 KOG1381 Para-hydroxybenzoate-p 93.6 0.43 9.4E-06 42.8 8.3 97 79-180 234-332 (353)
52 COG0382 UbiA 4-hydroxybenzoate 86.4 5.1 0.00011 34.9 8.7 33 70-102 48-80 (289)
53 PRK12884 ubiA prenyltransferas 86.4 8.1 0.00018 33.3 9.8 52 73-125 41-95 (279)
54 PRK13362 protoheme IX farnesyl 85.6 25 0.00055 31.3 12.8 49 76-124 54-106 (306)
55 PRK12872 ubiA prenyltransferas 85.4 13 0.00027 32.1 10.6 31 72-102 39-69 (285)
56 TIGR02056 ChlG chlorophyll syn 83.9 8.4 0.00018 34.1 9.0 54 76-129 61-116 (306)
57 COG0109 CyoE Polyprenyltransfe 83.5 23 0.0005 32.0 11.5 84 15-118 133-224 (304)
58 PF01040 UbiA: UbiA prenyltran 79.4 20 0.00043 29.6 9.2 28 73-100 27-54 (257)
59 PRK09573 (S)-2,3-di-O-geranylg 79.3 21 0.00045 30.9 9.6 53 73-126 41-96 (279)
60 PRK12324 phosphoribose diphosp 79.2 12 0.00026 33.4 8.2 51 77-127 54-108 (295)
61 PRK13592 ubiA prenyltransferas 76.9 51 0.0011 29.7 11.4 74 54-127 29-106 (299)
62 TIGR01476 chlor_syn_BchG bacte 73.7 15 0.00033 31.8 7.2 47 77-124 46-95 (283)
63 PRK12882 ubiA prenyltransferas 73.3 30 0.00064 29.9 8.9 50 75-125 44-96 (276)
64 PRK12887 ubiA tocopherol phyty 71.6 34 0.00074 30.4 9.1 31 88-119 72-105 (308)
65 TIGR01475 ubiA_other putative 71.6 27 0.00059 30.2 8.3 47 73-119 40-90 (282)
66 PRK12875 ubiA prenyltransferas 69.2 44 0.00096 29.4 9.2 19 86-104 62-80 (282)
67 PRK08238 hypothetical protein; 68.8 33 0.00072 32.5 8.8 52 76-127 233-288 (479)
68 PRK13595 ubiA prenyltransferas 68.6 56 0.0012 29.2 9.8 52 74-126 52-106 (292)
69 TIGR00791 gntP gluconate trans 67.1 1.1E+02 0.0023 28.4 12.9 95 9-116 4-99 (440)
70 PRK12869 ubiA protoheme IX far 66.3 40 0.00086 29.4 8.3 54 72-125 39-96 (279)
71 PLN00012 chlorophyll synthetas 65.7 50 0.0011 30.5 9.1 45 78-123 132-179 (375)
72 PRK13591 ubiA prenyltransferas 65.1 61 0.0013 29.3 9.3 69 55-134 49-117 (307)
73 PRK12883 ubiA prenyltransferas 63.7 50 0.0011 28.5 8.4 43 80-123 48-93 (277)
74 PRK10034 fructuronate transpor 61.5 43 0.00094 31.7 8.0 95 10-117 8-103 (447)
75 TIGR01473 cyoE_ctaB protoheme 61.4 55 0.0012 28.3 8.2 51 74-124 40-94 (280)
76 cd00867 Trans_IPPS Trans-Isopr 60.8 9 0.0002 31.6 3.1 39 79-117 156-204 (236)
77 PRK07566 bacteriochlorophyll/c 56.7 67 0.0015 28.5 8.1 46 80-126 76-124 (314)
78 PRK10472 low affinity gluconat 53.1 1.7E+02 0.0036 27.8 10.4 36 6-46 5-40 (445)
79 PRK12847 ubiA 4-hydroxybenzoat 52.2 95 0.0021 26.9 8.2 46 79-124 55-104 (285)
80 PRK12871 ubiA prenyltransferas 51.6 1.5E+02 0.0032 26.3 9.4 46 81-127 54-112 (297)
81 PRK04375 protoheme IX farnesyl 48.6 1E+02 0.0022 27.1 7.8 46 79-124 54-103 (296)
82 PRK09921 permease DsdX; Provis 47.7 2.5E+02 0.0054 26.5 11.2 38 4-46 4-41 (445)
83 PLN02776 prenyltransferase 47.6 1.9E+02 0.0042 26.4 9.7 49 74-122 34-86 (341)
84 PRK12392 bacteriochlorophyll c 45.9 1.5E+02 0.0033 26.7 8.7 46 85-131 66-114 (331)
85 PRK05951 ubiA prenyltransferas 44.6 1.8E+02 0.004 25.5 8.9 50 78-127 49-105 (296)
86 PRK12873 ubiA prenyltransferas 43.7 1.6E+02 0.0036 26.2 8.4 47 75-121 50-100 (294)
87 PLN02809 4-hydroxybenzoate non 43.7 1.4E+02 0.003 26.3 7.9 33 79-111 55-88 (289)
88 TIGR01474 ubiA_proteo 4-hydrox 42.7 1.6E+02 0.0034 25.6 8.1 45 80-124 51-99 (281)
89 COG4512 AgrB Membrane protein 41.4 47 0.001 28.1 4.3 67 94-171 16-82 (198)
90 PRK12888 ubiA prenyltransferas 40.6 2.5E+02 0.0055 24.6 10.1 27 75-101 45-71 (284)
91 PRK12848 ubiA 4-hydroxybenzoat 40.0 2.5E+02 0.0054 24.3 9.0 46 80-125 53-102 (282)
92 PRK12870 ubiA 4-hydroxybenzoat 39.8 1.8E+02 0.004 25.4 8.1 46 78-123 55-104 (290)
93 PRK14984 high-affinity glucona 39.2 3.4E+02 0.0074 25.7 11.3 95 9-116 4-99 (438)
94 PRK10581 geranyltranstransfera 38.5 31 0.00067 30.6 3.0 47 77-123 211-268 (299)
95 PRK12886 ubiA prenyltransferas 35.7 2.5E+02 0.0055 24.6 8.3 22 80-101 53-74 (291)
96 PRK11383 hypothetical protein; 33.2 2.7E+02 0.0058 22.7 7.9 85 8-98 45-132 (145)
97 PRK12895 ubiA prenyltransferas 32.9 1.9E+02 0.0042 25.5 7.1 23 78-100 46-68 (286)
98 PF06645 SPC12: Microsomal sig 31.2 2E+02 0.0042 20.5 6.8 30 110-139 5-34 (76)
99 cd00385 Isoprenoid_Biosyn_C1 I 30.9 27 0.00059 27.4 1.3 37 77-113 148-186 (243)
100 TIGR00886 2A0108 nitrite extru 29.8 3.4E+02 0.0074 22.9 8.7 20 108-127 63-82 (366)
101 PRK10133 L-fucose transporter; 26.9 4.7E+02 0.01 23.7 8.8 77 104-180 83-163 (438)
102 PRK12878 ubiA 4-hydroxybenzoat 26.6 4.4E+02 0.0094 23.5 8.3 25 76-100 79-103 (314)
103 PRK07419 1,4-dihydroxy-2-napht 25.9 4.4E+02 0.0096 23.4 8.2 52 78-130 57-111 (304)
104 TIGR00751 menA 1,4-dihydroxy-2 25.3 4.7E+02 0.01 22.9 11.8 55 79-133 38-98 (284)
105 PRK09821 putative transporter; 24.0 6.3E+02 0.014 24.0 11.1 36 6-46 5-40 (454)
106 PRK13106 ubiA prenyltransferas 23.7 5.2E+02 0.011 22.9 8.9 25 76-100 56-80 (300)
107 PRK12876 ubiA prenyltransferas 23.0 5.5E+02 0.012 23.0 8.5 31 71-101 49-79 (300)
108 PF05399 EVI2A: Ectropic viral 20.6 1.9E+02 0.0042 25.0 4.6 52 112-174 127-178 (227)
109 KOG4686 Predicted sugar transp 20.5 7.2E+02 0.016 23.3 10.6 100 75-191 307-406 (459)
110 cd00685 Trans_IPPS_HT Trans-Is 20.1 71 0.0015 27.2 1.9 30 81-110 181-221 (259)
No 1
>PLN02878 homogentisate phytyltransferase
Probab=100.00 E-value=8.6e-58 Score=398.49 Aligned_cols=192 Identities=46% Similarity=0.860 Sum_probs=186.1
Q ss_pred CCchHHHHHHHHHHHHHHHhcCCCCcchhhhhhhhhHHHHHHHhh-hhhhhHHHHHHHHHhcCCCCChHHHHHHHHHHHH
Q 029438 2 SGSPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMG-LTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSI 80 (193)
Q Consensus 2 ~gs~~l~~~~~~~l~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~-iv~lg~~~h~~~~~~~~~~~~~~~~~~~~~~~~l 80 (193)
.|++|+++++..+++++++||+|+||+|+||+|+++++|+.++|+ ++|+|+|.|+++.++|++..+++++++.++++++
T Consensus 88 ~g~~~l~~al~~~~~lg~~YS~~lp~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h~~~~~~g~~~~~~~~~~~~~~f~~~ 167 (280)
T PLN02878 88 VGSWPLFWALFVSFVLGTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIFATAFMCF 167 (280)
T ss_pred HChHHHHHHHHHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHhCCccccchhHHHHHHHHHH
Confidence 367789999999999999999999999999999999999999999 9999999999999999887888899999889999
Q ss_pred HHHHHHHHhcCCChhhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHh
Q 029438 81 FAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQS 160 (193)
Q Consensus 81 ~~~~i~i~kDi~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~h~~l~~~l~~~~ 160 (193)
|+.++|++||+||+||||++|+||+|+++|+|+++++|..++.+||++++.+|++++..+++.+++++|++++..+|+|+
T Consensus 168 f~~~i~i~KDi~DieGD~~~Gi~Tlpv~lG~~~~~~i~~~ll~~aY~~~i~~g~~~~~~~~~~~~~~~h~~l~~~L~~rs 247 (280)
T PLN02878 168 FSVVIALFKDIPDVEGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYAAAILVGASSSFLWSKIITVLGHGILASILWQRA 247 (280)
T ss_pred HHHHHHHHhhCcCchhHHHCCCceechhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCChhHHHHHHHHHHHHHHHHHHhhhhcC
Q 029438 161 KKVDLDNFESTFGFYMLIWKLTFVEYILIHFLR 193 (193)
Q Consensus 161 ~~~d~~~~~a~~~fY~fiW~lf~~ey~l~p~~~ 193 (193)
+++|++||+++++|||||||+||+||+++|+.|
T Consensus 248 ~~vD~~sk~~i~~fY~fiwklfy~ey~l~p~~~ 280 (280)
T PLN02878 248 QSVDLSSKAAITSFYMFIWKLFYAEYFLIPLVR 280 (280)
T ss_pred HhcCcccHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999987
No 2
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=100.00 E-value=1.1e-47 Score=339.01 Aligned_cols=188 Identities=33% Similarity=0.591 Sum_probs=176.4
Q ss_pred CchHHHHHHHHHHHHHHHhcCCCCcchhhhhhhhhHHHHHHHhh-hhhhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHH
Q 029438 3 GSPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMG-LTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIF 81 (193)
Q Consensus 3 gs~~l~~~~~~~l~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~-iv~lg~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~ 81 (193)
.+++.++...++++++++|| .||+|+||+|+.++.|++.++| ++++|.+.|+++...+ +..++.++++++++.+++
T Consensus 118 ~~~~~~~~~~~~~~lg~~Ys--~pP~rlKr~~~~~~~~i~~~~g~i~~~g~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 194 (308)
T PRK12887 118 LGPWLLITVGISLLIGTAYS--LPPIRLKRFPLLAALCIFTVRGVIVNLGLFLHFQWLLGG-SVLIPPTVWLLTLFVLVF 194 (308)
T ss_pred HhHHHHHHHHHHHHHHHHHc--CCchhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccCcHHHHHHHHHHHHH
Confidence 35788888999999999999 7999999999999999999999 9999999888764433 556778888999999999
Q ss_pred HHHHHHHhcCCChhhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 029438 82 AFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSK 161 (193)
Q Consensus 82 ~~~i~i~kDi~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~h~~l~~~l~~~~~ 161 (193)
+.+++++||+||+||||+.|+||+|+++|+|++.+++..++.++|+..++.++.+...+++.+++++|++++..+|+|++
T Consensus 195 ~~~~~l~~di~D~egD~~~Gi~Tlav~lG~~~a~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (308)
T PRK12887 195 TFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKLSCWVLTACYLGMIAVGLLSLPTVNPAFLIVSHLILLALLWWRSQ 274 (308)
T ss_pred HHHHHHHHhccchhhHHHcCCcchhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCChhHHHHHHHHHHHHHHHHHHhhhhcC
Q 029438 162 KVDLDNFESTFGFYMLIWKLTFVEYILIHFLR 193 (193)
Q Consensus 162 ~~d~~~~~a~~~fY~fiW~lf~~ey~l~p~~~ 193 (193)
++|++||+++++|||||||+||+||+++|+.|
T Consensus 275 ~~~~~~~~~~~~~y~~iw~l~~~ey~~~~~~~ 306 (308)
T PRK12887 275 RVDLQDKQAIAQFYQFIWKLFFLEYLLFPIAC 306 (308)
T ss_pred hcCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999975
No 3
>PRK13595 ubiA prenyltransferase; Provisional
Probab=99.93 E-value=1.8e-24 Score=190.43 Aligned_cols=162 Identities=20% Similarity=0.213 Sum_probs=120.9
Q ss_pred chHHHHHHHHHHHHHHHhcCCCCcchhhhhhhhhHHHHHHHhhhhhhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHH
Q 029438 4 SPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGLTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAF 83 (193)
Q Consensus 4 s~~l~~~~~~~l~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~iv~lg~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 83 (193)
+|..+....++++++++|| .||+|+|++|+++|+|... .+ .++ +.+..+.|.+ .+.. ......+|+.
T Consensus 117 ~~~~~~l~~v~~~l~~~YS--~pPlRlK~rp~l~~l~~~~-~g-~p~----~~~~~~~g~~--~~~~---~l~a~~~w~~ 183 (292)
T PRK13595 117 PPAATLLLLLYAALFVGYS--LPPLRFKARPFLDGLSNAA-YA-LPL----ALPALALGAP--VPWP---PLLALMAWSV 183 (292)
T ss_pred hHHHHHHHHHHHHHHHHHc--cCccchhcCcchhHHHHHH-HH-HHH----HHHHHHcCCc--chHH---HHHHHHHHHH
Confidence 3455666678889999999 7999999999999998532 22 111 2233333312 1122 2244567889
Q ss_pred HHHHHhcCCChhhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhc
Q 029438 84 VNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKKV 163 (193)
Q Consensus 84 ~i~i~kDi~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~h~~l~~~l~~~~~~~ 163 (193)
+.|++||+||+||||+.|+||+|+++|+|++.++|..+..++-. ......++.. +.+.+.+...+..+| .
T Consensus 184 g~dii~ai~DiegDr~~Gi~Slpv~lG~r~a~~~a~~~~~~a~~--~~~~~~~~~~---~~~~~~~~~~~~~~~-----~ 253 (292)
T PRK13595 184 GKHAFDAAQDIPADRAAGTRTVATTLGVRGTALYALAWFLLAGA--LLWPVSRLTA---LALWLICGGMALALW-----R 253 (292)
T ss_pred HHHHHHhccChHhHHHcCCeechHHhCcHhHHHHHHHHHHHHHH--HHHHhcchHH---HHHHHHHHHHHHHHh-----c
Confidence 99999999999999999999999999999999999988777666 3334445533 336777776555555 7
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHh
Q 029438 164 DLDNFESTFGFYMLIWKLTFVEYIL 188 (193)
Q Consensus 164 d~~~~~a~~~fY~fiW~lf~~ey~l 188 (193)
|.+++++++.|..|+|.|+.++++.
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~g~~~ 278 (292)
T PRK13595 254 RPTPETAHRLYPLSIVTPWIVGTVA 278 (292)
T ss_pred CCCHHHHhccchHHHHHhHHHHHHH
Confidence 8999999999999999999998764
No 4
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=99.83 E-value=8.4e-19 Score=153.91 Aligned_cols=121 Identities=21% Similarity=0.228 Sum_probs=97.3
Q ss_pred CchHHHHHHHHHHHHHHHhcCCCCcchhhhhhhhhHHHHHHHhh-hhhhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHH
Q 029438 3 GSPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMG-LTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIF 81 (193)
Q Consensus 3 gs~~l~~~~~~~l~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~-iv~lg~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~ 81 (193)
++|+.+....++++.++.|| .||.|+|++|+.++.+...... ...+|.+. + + ..++.+.+.....+.++
T Consensus 103 ~~~~~~~l~~~ai~~~~~YS--~~p~rlk~~gl~d~~t~~~~f~~~~v~G~~~-----~-~--~~~~~~~~l~~~~~~~~ 172 (282)
T PRK13105 103 GSWASGLVLAVSVFAVVAYS--APGLRFKERPFLDSLTSSTHFVSPALYGLVL-----A-G--APFTAALWAVLAAFFLW 172 (282)
T ss_pred hhHHHHHHHHHHHHHHHHhc--CCCccccccchHHHHHHHHHHHHHHHHHHHH-----h-h--ccccHHHHHHHHHHHHH
Confidence 35666777779999999999 7999999999999976554433 22223321 1 2 23455677788889999
Q ss_pred HHHHHHHhcCCChhhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHHHHHH
Q 029438 82 AFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAG 133 (193)
Q Consensus 82 ~~~i~i~kDi~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~i~~~ 133 (193)
+.+++++||+||+||||+.|+||+|+++|+|++.+++..+..++++..+..+
T Consensus 173 ~~a~~ii~~irDie~Dr~~G~~Tlpv~lG~~~a~~~~~~l~~~a~~~~~~~~ 224 (282)
T PRK13105 173 GMASHAFGAVQDVVADREAGIASIATVLGARRTVRLAVGLYAAAAVLMLALP 224 (282)
T ss_pred HHHHHHHHhCcchHhHHHcCCccchHHhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998776444
No 5
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=99.81 E-value=3e-18 Score=148.18 Aligned_cols=126 Identities=23% Similarity=0.320 Sum_probs=101.3
Q ss_pred CchHHHHHHHHHHHHHHHhcCCCCcc-hhhhhhhhhHHHHHHHhh-hhhhhHHHHHHHHHhcCCCCChHHHHHHHHHHHH
Q 029438 3 GSPPLLLNQILFFLCGCAYSLPLPFL-RWKSHTFMAPLCLVITMG-LTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSI 80 (193)
Q Consensus 3 gs~~l~~~~~~~l~l~~~YS~~~Ppl-RlKr~p~l~~l~I~~v~~-iv~lg~~~h~~~~~~~~~~~~~~~~~~~~~~~~l 80 (193)
.+|+.++...++.++++.|| .||. |+||.|.+++.++...+| ...++.+.+ + ...++.+.+....+.++
T Consensus 102 ~~~~~~~~~~~~~~~~~~Ys--~~~~~~lk~~p~~~~~~vg~~~g~~~~~~~~~~-~------~~~~~~~~~~~~~~~fl 172 (285)
T PRK12872 102 GGPKFALIFIIPLILGILYS--VFFKRRLKRIPLFKNLVVSLLWALSPLILGVYY-Y------QLTIFSLLLLYAVFIFL 172 (285)
T ss_pred ccHHHHHHHHHHHHHHHHHh--ChhHHHHhhhhhHhhHHHHHHHHHHHHHHHHHh-c------ccccchHHHHHHHHHHH
Confidence 46777778888999999999 5665 799999999999999998 444433222 1 12245556667788888
Q ss_pred HHHHHHHHhcCCChhhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 029438 81 FAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGASSS 137 (193)
Q Consensus 81 ~~~~i~i~kDi~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~i~~~~~~~ 137 (193)
..+..+++||+||+||||+.|++|+|+++|+|++.+++..+..+.++..+.......
T Consensus 173 ~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~~~t~~~~~~~~~~~~~~~~~~~~~~~ 229 (285)
T PRK12872 173 KSFIREIVFDIKDIEGDRKSGLKTLPIVLGKERTLKFLLILNLLFLILLILGVYTGL 229 (285)
T ss_pred HHHHHHHHHhcccchhHHHcCCcccchhcchHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 899999999999999999999999999999999999999999999887775555443
No 6
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=99.81 E-value=1.2e-18 Score=151.35 Aligned_cols=171 Identities=18% Similarity=0.173 Sum_probs=115.3
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCcchhhhhhhhhHHHHHHHhhhhhhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHH
Q 029438 5 PPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGLTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFV 84 (193)
Q Consensus 5 ~~l~~~~~~~l~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~iv~lg~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 84 (193)
|+......++++++++|| .||+|+||++++++..+....+..++.. +....+ .++.+.+.....+++++.+
T Consensus 106 ~~~~~l~~~~~~~~~~Ys--~~p~~lk~~~~~g~~~vg~~~~~~~~~~----~~~~~~---~~~~~~~~~~~~~~l~~~~ 176 (283)
T TIGR01476 106 WLIVLFTVVGIVLAVIYS--MPPIKLKRNGWLGPPAVGLSYEGLPWMA----GHAIFA---PLTWQSVVVALIYSLGAHG 176 (283)
T ss_pred HHHHHHHHHHHHHhheec--CchhhhccCCCccHHHHHHHHHHHHHHH----HHHHhC---CCCHHHHHHHHHHHHHHHH
Confidence 333455557888999999 7999999999888876553333111111 111222 2455566677788899999
Q ss_pred HHHHhcCCChhhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 029438 85 NGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKKVD 164 (193)
Q Consensus 85 i~i~kDi~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~h~~l~~~l~~~~~~~d 164 (193)
++..||+||+||||+.|+||+|+++|+|++.+++..++.++|+..+........++.. .+.-+++...++.+.+..
T Consensus 177 i~~~nd~~D~~~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~---~l~~ll~~p~~~~~~~~~- 252 (283)
T TIGR01476 177 IMTLNDFKSVEGDRQLGLRSLPVMIGVKRAAIVAVTTINVFQAMVIGLLLIWGQPWVA---TIVFLLLVAQIYNQIKLF- 252 (283)
T ss_pred HHHHHhccchhhHHHcCCcCcceEEcHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHH---HHHHHHHHHHHHHHHHHH-
Confidence 9999999999999999999999999999999999999999988666544433322211 122223333433333322
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHh
Q 029438 165 LDNFESTFGFYMLIWKLTFVEYIL 188 (193)
Q Consensus 165 ~~~~~a~~~fY~fiW~lf~~ey~l 188 (193)
.+++++...-++..++++++==++
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~ 276 (283)
T TIGR01476 253 LRDPQQNYVRYNATANPFYVLGML 276 (283)
T ss_pred HhChHHhhHHhhhhcHHHHHHHHH
Confidence 236666777788888887754333
No 7
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=99.80 E-value=2e-18 Score=154.36 Aligned_cols=156 Identities=17% Similarity=0.220 Sum_probs=107.8
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCcchhhhhhhhhHHHHHHHhhhhhhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHH
Q 029438 5 PPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGLTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFV 84 (193)
Q Consensus 5 ~~l~~~~~~~l~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~iv~lg~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 84 (193)
+..++..+++++++++|| .||+|+||+++.+...+....+..++.. .....+ .++.+.+.+....++++.+
T Consensus 125 ~~il~~~~~~l~l~~~YS--~~P~~lKr~~~~g~~~vGl~~~~~~~~~----~~a~~g---~~~~~~~~l~~~~~l~~~~ 195 (331)
T PRK12392 125 MVIISSILAGLFVAYIYS--APPLKLKKNILTSAPAVGFSYGFITFLS----ANALFS---DIRPEVVWLAGLNFFMAIA 195 (331)
T ss_pred HHHHHHHHHHHHHhhhhc--CCchhhhccchhHHHHHHHHHHHHHHHH----HHHHhc---CCCHHHHHHHHHHHHHHHH
Confidence 334455567899999999 6999999999988776544444111111 112333 2455666777788899999
Q ss_pred HHHHhcCCChhhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 029438 85 NGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKKVD 164 (193)
Q Consensus 85 i~i~kDi~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~h~~l~~~l~~~~~~~d 164 (193)
.+++||+||+||||+.|+||+|+++|+|++.+++.....+..+..+..+..+...+- ....-++++.++++|.+.
T Consensus 196 ~~~i~d~~D~egD~~~G~kTlpV~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~q~~l-- 270 (331)
T PRK12392 196 LIIMNDFKSVEGDKEGGLKSLTVMIGAKNTFLVSFIIIDLVFAVFAWLAWSWGFTVL---MYFILVGLVLNIVIQIQL-- 270 (331)
T ss_pred HHHHHcccchhhHHHcCCeeeEeEEcHhhHHHHHHHHHHHHHHHHHHHHHHhcccHH---HHHHHHHHHHHHHHHHHH--
Confidence 999999999999999999999999999999999887776777766666666553322 223334444566666664
Q ss_pred CCChhHHHHH
Q 029438 165 LDNFESTFGF 174 (193)
Q Consensus 165 ~~~~~a~~~f 174 (193)
.+||.+-.+|
T Consensus 271 ~r~p~~~~~~ 280 (331)
T PRK12392 271 YRDPKGGISF 280 (331)
T ss_pred HhChhhhhHH
Confidence 3444443333
No 8
>PLN00012 chlorophyll synthetase; Provisional
Probab=99.79 E-value=6.6e-18 Score=153.40 Aligned_cols=167 Identities=17% Similarity=0.178 Sum_probs=116.6
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCcchhhhhhhhhHHHHHHHhhhhhhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHH
Q 029438 5 PPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGLTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFV 84 (193)
Q Consensus 5 ~~l~~~~~~~l~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~iv~lg~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 84 (193)
|..++..+++++++++|| .||+|+||++++++..+.+..+.+++ +. +..+.| .++...+.+..++++++.+
T Consensus 197 ~~~~~l~l~gi~l~~~YS--~pPl~lKr~~~~G~v~lG~~~~~lp~--~~--g~a~~g---~~s~~~illal~~~l~~la 267 (375)
T PLN00012 197 PIVFYLALGGSLLSYIYS--APPLKLKQNGWIGNYALGASYISLPW--WA--GQALFG---TLTPDVVVLTLLYSIAGLG 267 (375)
T ss_pred HHHHHHHHHHHHHhhhhc--CCchhhhHhccHhHHHHHHHHHHHHH--HH--HHHHcC---CCCHHHHHHHHHHHHHHHH
Confidence 444555567888999999 79999999999998765444442221 11 112223 3556667777888999999
Q ss_pred HHHHhcCCChhhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 029438 85 NGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKKVD 164 (193)
Q Consensus 85 i~i~kDi~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~h~~l~~~l~~~~~~~d 164 (193)
+++.||+||+||||+.|++|+|+++|+|++.+++..++.+.+...+....... ......+.-.+.+.+++++.+. .
T Consensus 268 i~ivnd~~Die~Dr~aG~~TLpV~~G~~~a~~l~~~~l~l~~l~~~~~l~~~~---~~~y~~~~~~l~l~~l~~~~~~-~ 343 (375)
T PLN00012 268 IAIVNDFKSIEGDRALGLQSLPVAFGVETAKWICVGSIDITQLSVAGYLLAIG---KPYYALALLGLIIPQIFFQFKY-F 343 (375)
T ss_pred HHHHhhhcchhhHHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHH-H
Confidence 99999999999999999999999999999999998777777664443222211 1122223333344555555553 3
Q ss_pred CCChhHHHHHHHHHHHHHHH
Q 029438 165 LDNFESTFGFYMLIWKLTFV 184 (193)
Q Consensus 165 ~~~~~a~~~fY~fiW~lf~~ 184 (193)
.+|+.++...|+..=+.++.
T Consensus 344 ~~~p~~~~~~~~~~a~~~~~ 363 (375)
T PLN00012 344 LPDPVKNDVKYQASAQPFLV 363 (375)
T ss_pred hcCHHHHHHHHHHHHHHHHH
Confidence 56999999999987776654
No 9
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=99.79 E-value=4.5e-18 Score=150.15 Aligned_cols=168 Identities=18% Similarity=0.181 Sum_probs=117.0
Q ss_pred chHHHHHHHHHHHHHHHhcCCCCcchhhhhhhhhHHHHHHHhh-hhhhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHHH
Q 029438 4 SPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMG-LTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFA 82 (193)
Q Consensus 4 s~~l~~~~~~~l~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~-iv~lg~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~~ 82 (193)
+|+.++...++++++++|| .||.|+||++++++..+....+ ...++. + .+.| .++...+......++++
T Consensus 127 ~~~~~~l~~~~~~~~~~Yt--~gP~~lk~~g~~G~i~vg~~~~~~~~~~~--~---a~~g---~~~~~~~l~~~~~~l~~ 196 (306)
T TIGR02056 127 FPNVFVLALFGSFIAFIYS--APPLKLKQNGWLGNFALGASYIALPWWAG--H---ALFG---ELNPDIAVLTLIYSIAG 196 (306)
T ss_pred chHHHHHHHHHHHHHHHHc--CChhhhhhcccHHHHHHHHHHHHHHHHHH--H---HHhC---CCcHHHHHHHHHHHHHH
Confidence 3556666678899999999 7999999999889876554444 222221 1 1222 34566667788888999
Q ss_pred HHHHHHhcCCChhhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 029438 83 FVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKK 162 (193)
Q Consensus 83 ~~i~i~kDi~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~h~~l~~~l~~~~~~ 162 (193)
.++++.||++|+|+||+.|+||+|+++|+|++.+++..++..+|...+.........+.. .+.-.+....++++.+.
T Consensus 197 ~~i~~~n~~~D~e~D~~~G~~Tlpv~lG~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~ll~ll~~p~~~~~~~~ 273 (306)
T TIGR02056 197 LGIAIVNDFKSVEGDRALGLQSLPVAFGIETAAWICVGAIDIFQGLIAAYLLAIGENLYA---AALVALIIPQITFQDKY 273 (306)
T ss_pred HHHHHHHHccChHHHHHcCCcCcchhcChHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHH---HHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988888887655444333211111 11122223445555443
Q ss_pred ccCCChhHHHHHHHHHHHHHHHH
Q 029438 163 VDLDNFESTFGFYMLIWKLTFVE 185 (193)
Q Consensus 163 ~d~~~~~a~~~fY~fiW~lf~~e 185 (193)
+ .+|++....+|+-.=++||+-
T Consensus 274 ~-~~~~~~~~~~~~~~~~~~~~~ 295 (306)
T TIGR02056 274 F-LKDPLKNDVKYQASAQPFLVL 295 (306)
T ss_pred H-HhChHhhCcchhhhhhHHHHH
Confidence 3 236666777888777777654
No 10
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=99.75 E-value=6.1e-17 Score=143.42 Aligned_cols=121 Identities=20% Similarity=0.305 Sum_probs=93.3
Q ss_pred chHHHHHHHHHHHHHHHhcCCCCcchhhhhhhhhHHHHHHHhh-hhhhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHHH
Q 029438 4 SPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMG-LTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFA 82 (193)
Q Consensus 4 s~~l~~~~~~~l~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~-iv~lg~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~~ 82 (193)
+++..+...++++++++|| .||+++||++++++..+....+ +..++ ++...+ +..++...++....+++++
T Consensus 131 ~~~~~~l~l~~~~~~~~Yt--~gP~~lK~~~~~g~i~vg~~~g~~~~~~-----g~~~~~-~~~~~~~~~l~~~~~~l~~ 202 (314)
T PRK07566 131 GPWVFLAALLGLFLAWIYS--APPLRLKQNGWLGNYAVGLSYEGLPWWA-----GAAAFG-AGLPSWPIVILALLYSLGA 202 (314)
T ss_pred ChHHHHHHHHHHHHHHHhc--CCccccccccchhhHHHHHHHHHHHHHH-----HHHHhc-cCCCCHHHHHHHHHHHHHH
Confidence 3455555667888899999 6999999999989876665544 22221 111222 2234556677778888899
Q ss_pred HHHHHHhcCCChhhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHHHHH
Q 029438 83 FVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIA 132 (193)
Q Consensus 83 ~~i~i~kDi~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~i~~ 132 (193)
.+++..||++|+|+||+.|+||+|+++|+|++.+++..++.++|+..+..
T Consensus 203 ~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~~~a~~l~~~l~~~~~~~~~~~ 252 (314)
T PRK07566 203 HGIMTLNDFKSVEGDRQLGLRSLPVVFGEKNAARIACVVIDLFQLAVIAL 252 (314)
T ss_pred HHHHHHHHHHHhHhHHHcCCcccceeEcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988888865433
No 11
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=99.74 E-value=3.5e-16 Score=137.43 Aligned_cols=174 Identities=18% Similarity=0.166 Sum_probs=126.1
Q ss_pred chHHHHHHHHHHHHHHHhcCCCCcchhhhhhhhhHHHHHHHhh-hhhhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHHH
Q 029438 4 SPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMG-LTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFA 82 (193)
Q Consensus 4 s~~l~~~~~~~l~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~-iv~lg~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~~ 82 (193)
+++.+...++++++++.|| .||+|+|++|+ |...+....| ...+|.++. ++ ..++.+.+.......+++
T Consensus 115 ~~~~l~l~~~~~~~~~~Yt--~~P~~lky~gl-Ge~~v~~~~g~~~vlg~~~~-~~------~~~~~~~~~~sl~~~l~~ 184 (296)
T PRK05951 115 GIGAVTLALLGVFLWTCYM--GPPFFLKYRWL-GEHLVFYAWSHMLVMGLIYV-WL------GNLSSPNLLAGVPLGLLM 184 (296)
T ss_pred cHHHHHHHHHHHHHHHHHc--CCCcccCCCCc-hHHHHHHHHHHHHHHHHHHH-Hh------CcccHHHHHHHHHHHHHH
Confidence 4556666678999999999 79999998876 8777777777 666666532 32 123445566777888888
Q ss_pred HHHHHHhcCCChhhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 029438 83 FVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKK 162 (193)
Q Consensus 83 ~~i~i~kDi~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~h~~l~~~l~~~~~~ 162 (193)
..+...|+++|+|+||+.|+||+|+++|+|++ ++...++..+|+..+......-.++......++.......+.++.+.
T Consensus 185 ~~il~~n~~~D~e~D~~~G~~Tlav~lG~~~a-~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~ll~lp~~~~~~~~~~~~ 263 (296)
T PRK05951 185 ALVLLSNNLRDIEDDERKGIPTLAVIFGRRGA-ALYIFALLSPYVILQILLIAILTPLISLWALLSLLVAYALCLWQLRK 263 (296)
T ss_pred HHHHHHCCCccchhHHHCCCeeeeeeEcHhhH-HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999 77667778888876665554433332333444444444566667777
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHh
Q 029438 163 VDLDNFESTFGFYMLIWKLTFVEYIL 188 (193)
Q Consensus 163 ~d~~~~~a~~~fY~fiW~lf~~ey~l 188 (193)
.|.++++...+.++..=-++...+++
T Consensus 264 ~~~~~~~~~~~~~~~~g~l~~~~~~l 289 (296)
T PRK05951 264 FPPDPDEATVQLFMLFGYLYILATLL 289 (296)
T ss_pred CcccccHHHHHHHHHHHHHHHHHHHH
Confidence 77777777778877766666665543
No 12
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=99.73 E-value=3.8e-16 Score=136.05 Aligned_cols=123 Identities=20% Similarity=0.212 Sum_probs=100.2
Q ss_pred chHHHHHHHHHHHHHHHhcCCCCcchhhhhhhhhHHHHHHHhh-hhhhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHHH
Q 029438 4 SPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMG-LTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFA 82 (193)
Q Consensus 4 s~~l~~~~~~~l~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~-iv~lg~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~~ 82 (193)
+++.++...++++++++|| .||.|+|++++ ++..+....| ....+.+ +.++ ..++.+.+.......+++
T Consensus 112 ~~~~~~~~~~~~~~~~~Ys--~~p~~~~~~gl-ge~~~~~~~G~~~~~~~~-~~~~------~~~~~~~~~~~l~~~l~~ 181 (293)
T PRK06080 112 GWWLLLLGLLCIAAAILYT--GGPKPYGYTGL-GELFVGVFFGLVIVLGTY-YLQA------GTVDSAVFLPALPCGLLI 181 (293)
T ss_pred hHHHHHHHHHHHHHhhhhc--CCCCccCCCCc-HHHHHHHHHHHHHHHHHH-HHhc------CCCCHHHHHHHHHHHHHH
Confidence 4566666677889999999 79999999987 8777666666 4444433 2221 235567788889999999
Q ss_pred HHHHHHhcCCChhhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHHHHHHhhh
Q 029438 83 FVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGASS 136 (193)
Q Consensus 83 ~~i~i~kDi~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~i~~~~~~ 136 (193)
..+...||++|+|+||+.|++|+|+++|+|++.++...++.++|+..+...+..
T Consensus 182 ~~~~~~n~~~D~~~D~~~G~~Tl~v~lG~~~a~~~~~~l~~~~~~~~~~~~~~~ 235 (293)
T PRK06080 182 GAVLLANNIRDIETDRENGKNTLAVRLGDKNARRLHAALLALAYLCIVLLALLG 235 (293)
T ss_pred HHHHHhcCCCcchhHHHcCCeeEEeeECcHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999877666554
No 13
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=99.72 E-value=4.2e-16 Score=130.61 Aligned_cols=102 Identities=34% Similarity=0.458 Sum_probs=83.5
Q ss_pred chHHHHHHHHHHHHHHHhcCCCCcchhhhhhhhhHHHHHHHhh-hhhhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHHH
Q 029438 4 SPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMG-LTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFA 82 (193)
Q Consensus 4 s~~l~~~~~~~l~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~-iv~lg~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~~ 82 (193)
+++.+....++.+.+++|| ||+|+||+|+.++.++....+ ....+.+. . ....+.+.+....+.+++.
T Consensus 91 ~~~~~~~~~~~~~~~~~Ys---~~~~lk~~~~~~~~~~~~~~~~~~~~~~~~------~--~~~~~~~~~~~~~~~~~~~ 159 (257)
T PF01040_consen 91 GPWFLLILLLGFLLGLLYS---PPLRLKRRPLWGELVVALVFGLLILLGAYA------A--GGDPPPPPFLLAIFFFLLI 159 (257)
T ss_pred CchhHHHHHHHHHHHHHHh---hhhhhcceeccchhhHHHhhhHhhhhhhhh------c--CCcccHHHHHHHHHHHHHH
Confidence 4566666677888889999 999999999999999888877 54444432 1 2233556667777778999
Q ss_pred HHHHHHhcCCChhhhHhcCCcchhHhhchhHHHH
Q 029438 83 FVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFP 116 (193)
Q Consensus 83 ~~i~i~kDi~DveGDr~~Gi~Tl~v~lG~~~~~~ 116 (193)
..+...+|++|+||||+.|.+|+|+++|+|++..
T Consensus 160 ~~~~~~~~~~D~~~D~~~g~~Tl~v~~G~~~~~~ 193 (257)
T PF01040_consen 160 FAIMFFNDIRDIEGDRKAGRRTLPVLLGEKKARY 193 (257)
T ss_pred HHHHHHHHhhhHHHHHHcCCcchHHHHHHHHHHH
Confidence 9999999999999999999999999999999998
No 14
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=99.72 E-value=6.6e-16 Score=133.80 Aligned_cols=151 Identities=15% Similarity=0.138 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcchhhhhhhhhHHHHHHHhh-hhhhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHH
Q 029438 6 PLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMG-LTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFV 84 (193)
Q Consensus 6 ~l~~~~~~~l~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~-iv~lg~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 84 (193)
...+...++.+++++|| .|+||+|.++|.++....| ...+|.. ..+ .. .+.+.+.+....+++.++
T Consensus 106 ~~~~~~~~~~~~~~~Yt-----~~lK~~~~~g~~~vg~~~g~~~~~g~~------~~~-~~-~~~~~~~l~~~~fl~~~~ 172 (276)
T PRK12882 106 LCLAIALFNSLLLVLYA-----ETLKGTPGLGNASVAYLTGSTFLFGGA------AVG-TE-GLLALLVLFALAALATLA 172 (276)
T ss_pred HHHHHHHHHHHHHHHHH-----HHHhcccchhHHHHHHHHHHHHHHHHH------Hhc-cc-chHHHHHHHHHHHHHHHH
Confidence 33444456777899999 7999999999998877777 4333332 122 11 122334445566677889
Q ss_pred HHHHhcCCChhhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 029438 85 NGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKKVD 164 (193)
Q Consensus 85 i~i~kDi~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~h~~l~~~l~~~~~~~d 164 (193)
.+++||+||+||||+.|++|+|+++|+|++.+++................. ...+.......-...+..++.+.+..|
T Consensus 173 ~~~~~~~~D~e~D~~~G~~tlpv~~G~~~t~~~~~~~~~~~~~~~~~~~~~--~~~~~~y~~~~~~~~~~~l~~~~~~~~ 250 (276)
T PRK12882 173 REIIKDVEDIEGDRAEGARTLPILIGVRKALYVAAAFLLVAVAASPLPYLL--STFGLWYLVLVAPADLVMLAAAYRSLK 250 (276)
T ss_pred HHHHhhhhhhhhHHHcCCccccHHhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999998877665555433321111 112223333322323344555666666
Q ss_pred CCChhHH
Q 029438 165 LDNFEST 171 (193)
Q Consensus 165 ~~~~~a~ 171 (193)
.+|+++.
T Consensus 251 ~~~~~~~ 257 (276)
T PRK12882 251 KTDPTAS 257 (276)
T ss_pred CCCHHHH
Confidence 6666544
No 15
>PRK13591 ubiA prenyltransferase; Provisional
Probab=99.71 E-value=1.7e-16 Score=140.87 Aligned_cols=148 Identities=22% Similarity=0.225 Sum_probs=102.8
Q ss_pred HHHHHHHHHHhcCC--CCc--chhhhhhhhhHHHHHHHhh-hhhhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHH
Q 029438 11 QILFFLCGCAYSLP--LPF--LRWKSHTFMAPLCLVITMG-LTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFVN 85 (193)
Q Consensus 11 ~~~~l~l~~~YS~~--~Pp--lRlKr~p~l~~l~I~~v~~-iv~lg~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i 85 (193)
..++.+.++.||.. .+| +|+|+.|.++++.++..+| ....+. ++. . . .+ .+...+..+.....+++
T Consensus 125 ~ll~~l~g~lYS~Glk~~P~plklK~~~glGnl~V~i~~G~~i~g~~----g~~--~-~-~~-~~~~~i~l~~~~~l~~~ 195 (307)
T PRK13591 125 AFLPFITGYLYSKGIKIGKFALKLKGGLGVKNIVVGITWGGFIAGIA----GSY--C-G-SL-IPVGLIFLFFGVKLFIN 195 (307)
T ss_pred HHHHHHHHHHhcCCCCCCCccccccCCCchhHHHHHHHHHHHHHHHH----Hhh--h-h-hH-HHHHHHHHHHHHHHHHH
Confidence 45788899999931 124 5999999999999988888 332211 111 0 0 01 11222333444445888
Q ss_pred HHHhcCCChhhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhccC
Q 029438 86 GLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKKVDL 165 (193)
Q Consensus 86 ~i~kDi~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~h~~l~~~l~~~~~~~d~ 165 (193)
+++||++|+||||+.|.+|+|+++|++++.++...+..++|+..++.....-.++.+.+..-+-.+-...+|..++..|-
T Consensus 196 ~iindirDiEGDr~~G~kTLPV~lG~~~A~~l~~~l~~~~~l~li~~~~~g~l~~~~~~~~~s~~~~l~~~~~~~~~~~~ 275 (307)
T PRK13591 196 SCVYDFKDVKGDTLAGIKTLPVSLGEQKTRNLLLGIHLFSHLVLGIALIFGVIAFEPIILLYSFVCGLICIQVYSSPFEN 275 (307)
T ss_pred HHHHHhhhhHhHHHcCCeeEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHcCCccc
Confidence 89999999999999999999999999999999999999999987766665555555654443445455667777666444
Q ss_pred CC
Q 029438 166 DN 167 (193)
Q Consensus 166 ~~ 167 (193)
++
T Consensus 276 ~~ 277 (307)
T PRK13591 276 EP 277 (307)
T ss_pred Cc
Confidence 33
No 16
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=99.71 E-value=1.6e-15 Score=133.19 Aligned_cols=125 Identities=16% Similarity=0.078 Sum_probs=105.5
Q ss_pred CchHHHHHHHHHHHHHHHhcCCCCcchhhhhhhhhHHHHHHHhh-hhhhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHH
Q 029438 3 GSPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMG-LTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIF 81 (193)
Q Consensus 3 gs~~l~~~~~~~l~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~-iv~lg~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~ 81 (193)
.+|+.+....++++.++.|| .||+++|++|+ |-.++....| +...|.+ +.|+ ..++.+.+..+....+.
T Consensus 104 ~~~~~l~lg~~g~~~~~~Yt--~gP~~l~y~gL-GE~~v~l~~G~l~v~g~~-yvqt------~~~~~~~~l~sl~~gl~ 173 (285)
T TIGR02235 104 WQITVLALVGLCCFLGYLYQ--GPPFRLGYQGL-GEPICWLCFGPLAIAAAL-YAQS------QSFSLIPWKASILVGLA 173 (285)
T ss_pred hhHHHHHHHHHHHHHHHhhc--CCCcccCCCCc-cHHHHHHHHHHHHHHHHH-HHhC------CcCcHHHHHHHHHHHHH
Confidence 35788888889999999999 79999999998 8777777788 6555554 3343 35667777888999999
Q ss_pred HHHHHHHhcCCChhhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 029438 82 AFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGASSS 137 (193)
Q Consensus 82 ~~~i~i~kDi~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~i~~~~~~~ 137 (193)
+..+...|+++|+|.||+.|.||+|+++|+|++.++...++..+|+..+.......
T Consensus 174 ~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v~~~~ 229 (285)
T TIGR02235 174 TTLILFCSHFHQVEDDLAHGKRSPVVRLGTKLAAKIVPWVISLSYVVLLIAVIGGF 229 (285)
T ss_pred HHHHHHhcCCccchhHHHcCCcceeheecHHhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999997765555443
No 17
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=99.70 E-value=8.4e-16 Score=136.16 Aligned_cols=124 Identities=16% Similarity=0.096 Sum_probs=105.4
Q ss_pred CchHHHHHHHHHHHHHHHhcCCCCcchhhhhhhhhHHHHHHHhh-hhhhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHH
Q 029438 3 GSPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMG-LTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIF 81 (193)
Q Consensus 3 gs~~l~~~~~~~l~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~-iv~lg~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~ 81 (193)
.+|+.+....+++++++.|| .||+|+|++|+ |-..+....| +...|.++ .|+ ..++...+.......+.
T Consensus 117 ~g~~~l~ig~~g~~~~~~YT--~gP~~l~y~gL-GE~~v~l~~G~l~v~g~~y-v~t------~~~~~~~~~~sl~~gll 186 (304)
T PRK07419 117 SDWTVLGLVLLCCFLGYLYQ--GPPFRLGYQGL-GEPLCFLAFGPLAVAAALY-SQT------PSWSLIPLAASIILGLA 186 (304)
T ss_pred hcHHHHHHHHHHHHHhhecc--CCCcccCCCCc-hHHHHHHHHHHHHHHHHHH-Hhc------CCCCHHHHHHHHHHHHH
Confidence 46888888889999999999 79999999997 8887777788 66666643 332 34666778888899999
Q ss_pred HHHHHHHhcCCChhhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHHHHHHhhh
Q 029438 82 AFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGASS 136 (193)
Q Consensus 82 ~~~i~i~kDi~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~i~~~~~~ 136 (193)
+..+...||++|+|.||+.|.||+|+++|+|++.++...++..+|+..+......
T Consensus 187 ~~~IL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~ay~~~i~~v~~g 241 (304)
T PRK07419 187 TSLILFCSHFHQVEDDLAAGKRSPIVRLGTKRGAQLLPWIVGLIYALELLPVLLG 241 (304)
T ss_pred HHHHHHHcCCcchhhHHHcCCcceeeeechHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999776655543
No 18
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=99.70 E-value=1.5e-15 Score=131.37 Aligned_cols=117 Identities=22% Similarity=0.331 Sum_probs=89.5
Q ss_pred chHHHHHHHHHHHHHHHhcCCCCcchhhhhhhhhHHHHHHHhh-hhhhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHHH
Q 029438 4 SPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMG-LTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFA 82 (193)
Q Consensus 4 s~~l~~~~~~~l~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~-iv~lg~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~~ 82 (193)
++...+...++.++++.|| .++||+|++++.++....+ ....|.. ..+ + .+.+.+.+....++++
T Consensus 103 ~~~~~~~~~~~~~~~~~Ys-----~~lK~~~~~~~~~~~~~~~~~~~~g~~------~~~-~--~~~~~~~l~~~~~~~~ 168 (279)
T PRK12884 103 SPLAFLVVILVSVLGILYN-----WKLKEYGLIGNLYVAFLTGMTFIFGGI------AVG-E--LNEAVILLAAMAFLMT 168 (279)
T ss_pred hHHHHHHHHHHHHHHHHHH-----HhhccccchhHHHHHHHHHHHHHHHHH------HhC-C--CchHHHHHHHHHHHHH
Confidence 3555555667888999999 7899999999988777666 3333322 112 1 1224556667778899
Q ss_pred HHHHHHhcCCChhhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHHHHHHh
Q 029438 83 FVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGA 134 (193)
Q Consensus 83 ~~i~i~kDi~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~i~~~~ 134 (193)
.+.++.||++|+|+||+.|++|+|+++|+|++.+++.......++..++...
T Consensus 169 ~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~~~ 220 (279)
T PRK12884 169 LGREIMKDIEDVEGDRLRGARTLAILYGEKIAGRIAAALFILAVLLSPLPYL 220 (279)
T ss_pred HHHHHHHHhhhhhhHHHcCCeeechHhcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998888888775554443
No 19
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=99.69 E-value=3.3e-15 Score=130.32 Aligned_cols=167 Identities=22% Similarity=0.298 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcchhhhhhhhhHHHHHHHhh-hhhhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHH
Q 029438 6 PLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMG-LTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFV 84 (193)
Q Consensus 6 ~l~~~~~~~l~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~-iv~lg~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 84 (193)
..++....++++.++| .++||.+.+++.++..+.+ ....|... +.+ ..+.+.+++..+..+++.+
T Consensus 117 ~~~~l~~~~~~l~~~Y------~~~Kr~~~~~~~~lg~~~~~~~~~g~~a-----~~~---~~~~~~~~l~~~~~l~~~~ 182 (289)
T COG0382 117 LAFLLSLAALVLALAY------PFLKRFTFLPQLVLGLAFGLGALAGAAA-----VGG---SLPLLAWLLLLAAILWTLG 182 (289)
T ss_pred HHHHHHHHHHHHHHHH------HHhhcCCchHHHHHHHHHHHHHHHHHHH-----HhC---ccchHHHHHHHHHHHHHHH
Confidence 3456667889999999 4899999999999998888 55555432 111 2456778889999999999
Q ss_pred HHHHhcCCChhhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 029438 85 NGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKKVD 164 (193)
Q Consensus 85 i~i~kDi~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~h~~l~~~l~~~~~~~d 164 (193)
.+++||+||+||||+.|++|+|+++|+|++..++.... .........+.... ........++...+..+++|...+|
T Consensus 183 ~~~i~~~~D~e~D~~~G~~s~~~~~G~~~a~~l~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (289)
T COG0382 183 YDIIYAIQDIEGDRKAGLKSLPVLFGIKKALALALLLL-LASALLVLLGLLAG--LLGLIYLLGLLVAALLLLYQILIVD 259 (289)
T ss_pred HHHHHhccCccchHhcCCcchHHHhCchhHHHHHHHHH-HHHHHHHHHHHHHh--hchHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999988777 44443333333222 2223466677777788889999998
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhh
Q 029438 165 LDNFESTFGFYMLIWKLTFVEYILI 189 (193)
Q Consensus 165 ~~~~~a~~~fY~fiW~lf~~ey~l~ 189 (193)
.++++....++..-...-...++..
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (289)
T COG0382 260 VRDPPACFALFDVNLLLGLLLFIGL 284 (289)
T ss_pred ccChHHHHHHHHHhhHHHHHHHHHH
Confidence 8888787777777666655555443
No 20
>PLN02922 prenyltransferase
Probab=99.69 E-value=2.8e-15 Score=133.39 Aligned_cols=131 Identities=19% Similarity=0.268 Sum_probs=104.4
Q ss_pred CchHHHHHHHHHHHHHHHhcCCCCcchhhhhhhhhHHHHHHHhh-hhhhhHHHHHHHHHhcC-C---CCChHHHHHHHHH
Q 029438 3 GSPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMG-LTGLPFYMHTQQYVLGR-P---FVITRPLILMGAI 77 (193)
Q Consensus 3 gs~~l~~~~~~~l~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~-iv~lg~~~h~~~~~~~~-~---~~~~~~~~~~~~~ 77 (193)
++|++++...++++.++.|| .||+|+|++|+ |=+.+....| +...|.| +.|+...+. . ..++.+.+...+.
T Consensus 121 ~~~~~l~iG~~g~~~~~~Yt--~gP~pl~y~gL-GE~~v~i~fG~l~v~g~y-~~~~~~~~~~~~~~~~~~~~~~l~slp 196 (315)
T PLN02922 121 GNIRVILLLAAAILCGYVYQ--CPPFRLSYKGL-GEPLCFAAFGPLATTAFY-LALASGAGGSEMAILPLTPTVLSASVL 196 (315)
T ss_pred cChHHHHHHHHHHHHHHHHh--cCCcccccCcc-hHHHHHHHHHHHHHHHHH-HHhcccccccccccccccHHHHHHHHH
Confidence 56888888889999999999 79999999999 6555555566 4445543 334321110 0 1245677889999
Q ss_pred HHHHHHHHHHHhcCCChhhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 029438 78 MSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGASSS 137 (193)
Q Consensus 78 ~~l~~~~i~i~kDi~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~i~~~~~~~ 137 (193)
..+.+..+...||++|+|.||+.|.||+|+++|+|++.++...++..+|+..+...+...
T Consensus 197 ~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v~~~~ 256 (315)
T PLN02922 197 VGLTTTLILFCSHFHQIDGDRAVGKMSPLVRLGTEKGSRVVRWAVLLLYSLLAALGLLKA 256 (315)
T ss_pred HHHHHHHHHHHccCcchhhHHHcCccceeeEEChHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999997776655543
No 21
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=99.67 E-value=4.7e-15 Score=130.11 Aligned_cols=119 Identities=18% Similarity=0.180 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcchhhhhhhhhHHHHHHHhh-hhhhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHH
Q 029438 6 PLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMG-LTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFV 84 (193)
Q Consensus 6 ~l~~~~~~~l~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~-iv~lg~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 84 (193)
+.++...++++.+++|| .||.|+|++|+ |-..+....| +..+|.++ .|+ ..++...+..+....+.+..
T Consensus 110 ~~l~lg~~~~~~~~~Yt--~gP~~l~y~gL-GE~~v~i~~G~l~v~g~~y-vq~------~~~~~~~ll~sl~~g~l~~~ 179 (284)
T TIGR00751 110 WFIALGALCIAAAITYT--VGSKPYGYAGL-GDISVLVFFGPLAVLGTQY-LQA------HRVDWVGILPAVATGLLACA 179 (284)
T ss_pred HHHHHHHHHHHHhHhhc--CCCCccccCch-HHHHHHHHHHHHHHHHHHH-Hhc------CCCCHHHHHHHHHHHHHHHH
Confidence 55666678999999999 79999999997 8887887888 66666543 333 24556666677888889999
Q ss_pred HHHHhcCCChhhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHHHHHHh
Q 029438 85 NGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGA 134 (193)
Q Consensus 85 i~i~kDi~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~i~~~~ 134 (193)
++..|+++|+|+||+.|.+|+|+++|+|++.++...++..+|+..+....
T Consensus 180 il~~Nn~~D~~~D~~~Gk~Tl~v~lG~~~a~~l~~~l~~~ay~~~~~~~~ 229 (284)
T TIGR00751 180 VLNINNLRDIPTDARAGKNTLAVRLGDARTRMYHQGLLAVAGVCTFVFML 229 (284)
T ss_pred HHHHcCcccchhHHHcCCEeehhhcchHhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999987665544
No 22
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=99.65 E-value=1.1e-14 Score=129.49 Aligned_cols=129 Identities=19% Similarity=0.118 Sum_probs=98.6
Q ss_pred CchHHHHHHHHHHHHHHHhcCCCCcchhhhhhhhhHHHHHHHhh-hhhhhHHHHHHHHHhc-------CC-CCCh-----
Q 029438 3 GSPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMG-LTGLPFYMHTQQYVLG-------RP-FVIT----- 68 (193)
Q Consensus 3 gs~~l~~~~~~~l~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~-iv~lg~~~h~~~~~~~-------~~-~~~~----- 68 (193)
.+|+.+....++.+.++.|| .||.++|++| +|.+.+....| +..+|.+ +.|+.... ++ ..++
T Consensus 112 ~g~~~l~igl~g~~~~~~Yt--~gP~~l~y~g-LGe~~v~i~~G~~~v~g~~-yv~t~~~~~~~~~~~~~~~~~~~~~~~ 187 (317)
T PRK13387 112 TSWLLLVIGLICFAIGILYT--GGPLPLSRMP-LGEIFSGLTMGFGIFLLAV-YINTNTITIESLLFQGEMFTIQGNLIA 187 (317)
T ss_pred hcHHHHHHHHHHHHHhhhhc--CCCcccccCc-cHHHHHHHHHHHHHHHHHH-HHhcCCCchHHHHhcccchhhcchhHH
Confidence 45777888889999999999 7999999999 59888777777 5545543 23331100 00 0000
Q ss_pred -HHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHHHHHHhh
Q 029438 69 -RPLILMGAIMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGAS 135 (193)
Q Consensus 69 -~~~~~~~~~~~l~~~~i~i~kDi~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~i~~~~~ 135 (193)
.+++.......+....++..||++|+|+||+.|.||+|+++|+|++.++...++.++|+..+.....
T Consensus 188 ~~~~~l~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~lG~~~a~~l~~~l~~~a~l~~~~~v~~ 255 (317)
T PRK13387 188 IIAIGVISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYYIGREKGVVLFAILFYASYLAIAVIVLM 255 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCeeeeeeEcHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 0123477888889999999999999999999999999999999999999999999999976554443
No 23
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=99.62 E-value=1.5e-14 Score=126.91 Aligned_cols=113 Identities=19% Similarity=0.326 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHhcCCCCcchhhhhhhhhHHHHHHHhhhhh-hhHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHH
Q 029438 8 LLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGLTG-LPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFVNG 86 (193)
Q Consensus 8 ~~~~~~~l~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~iv~-lg~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~ 86 (193)
...++..++++++|| .||+|+|++|+.+..+.. .. .++ ++-+ ..+ ....++..++++ .++++.+++
T Consensus 116 ~~~ll~~i~~~~~YS--~pP~rlk~~p~~~~~~~g-~~-~~~~~~~y-~~~------tg~~~~~~l~~a--~~l~~~~~~ 182 (282)
T PRK12875 116 WPALLAFLVLSVEYS--APPLRFKTTPVLDSLSNG-LY-ILPGVAAY-ALV------SGSLPPLLAVAG--GWLWAMGMH 182 (282)
T ss_pred HHHHHHHHHHHHHHc--CCCccchhccHHHHHHHH-HH-HHHHHHHH-HHH------cCCCcHHHHHHH--HHHHHHHHH
Confidence 344456789999999 799999999997764311 11 111 1111 111 123444443333 358999999
Q ss_pred HHhcCCChhhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHHHHHH
Q 029438 87 LLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAG 133 (193)
Q Consensus 87 i~kDi~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~i~~~ 133 (193)
++||+||+|+||+.|+||+|+++|+|++.+++..+..++-...+.++
T Consensus 183 ~in~i~Die~D~~aGi~Tlav~lG~~~a~~~~~~~~~~a~~~~~~~~ 229 (282)
T PRK12875 183 TFSAIPDIEPDRAAGIRTTATVLGERRTYAYCAACWLLAAAAFAAVD 229 (282)
T ss_pred HHHhccCHHHHHHcCCccchhhccHhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998877776666555444
No 24
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=99.62 E-value=5.9e-14 Score=122.08 Aligned_cols=146 Identities=18% Similarity=0.195 Sum_probs=102.4
Q ss_pred HHHHHHHHHhcCCCCcchhhhhhhhhHHHHHHHhh-hhhhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhc
Q 029438 12 ILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMG-LTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFVNGLLKD 90 (193)
Q Consensus 12 ~~~l~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~-iv~lg~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~i~kD 90 (193)
..+.++...|| + +||+..+++++.....+ .+..|+.. +.| ......+.+.+....++++.+.+++||
T Consensus 112 ~~~~~~~~~Y~---~---~Kr~~~~~~~~~g~~~~~~~~~g~~a-----~~g-~~~~~~~~~ll~~~~~~w~~~~~~i~~ 179 (282)
T TIGR01475 112 PLVLLVLIIYP---Y---TKRFTFLCHYVLGSTYGLAPLAGWVA-----VIG-TISFFLVAWLLGIGVGFWIAGFDLIYA 179 (282)
T ss_pred HHHHHHHHHHh---h---HhccccccHHHHHHHHHHHHHHHHHH-----HhC-CccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666788998 2 79999989887665555 33333321 212 211114445567778889999999999
Q ss_pred CCChhhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCChhH
Q 029438 91 LPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKKVDLDNFES 170 (193)
Q Consensus 91 i~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~h~~l~~~l~~~~~~~d~~~~~a 170 (193)
+||+|+||+.|++|+|+++|+|++.+++.....+.++.....+...... .. -.++..+....++++.+.+|.+|+++
T Consensus 180 ~~D~e~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~g--~~-y~~~~~~~~~~l~~~~~~~~~~~~~~ 256 (282)
T TIGR01475 180 IQDYEFDRKNGLHSIPARFGIKAALKIASLSHVITFILLLLVGFYVGNG--YI-ALLALILIGLILAYEHYIVDPGDQSK 256 (282)
T ss_pred HhhHHhHHHcCCCchHHHhchHHHHHHHHHHHHHHHHHHHHHHHHhhCc--HH-HHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 9999999999999999999999999998888888877666666544322 22 12334444567778888888888765
Q ss_pred HH
Q 029438 171 TF 172 (193)
Q Consensus 171 ~~ 172 (193)
..
T Consensus 257 ~~ 258 (282)
T TIGR01475 257 IQ 258 (282)
T ss_pred HH
Confidence 43
No 25
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=99.59 E-value=1.4e-13 Score=119.63 Aligned_cols=110 Identities=17% Similarity=0.131 Sum_probs=82.8
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCcchhhhhhhhhHHHHHHHhh-hhhhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHH
Q 029438 5 PPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMG-LTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAF 83 (193)
Q Consensus 5 ~~l~~~~~~~l~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~-iv~lg~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 83 (193)
+.......++.++++.|| .++||++.+++.++....| ....|... + + . ....+.+....++++.
T Consensus 104 ~~~~~l~~~~~~~~~~Ys-----~~lKr~~~~~~~~vg~~~G~~~~~g~~~-----~-~-~---~~~~~~l~~~~f~~~~ 168 (279)
T PRK09573 104 IYAFLIALLNSILLYLYA-----KDLKKTGLIGNLIVAYLTGLSFIFGGLA-----V-F-N---VLRIIILFLCAFFSTW 168 (279)
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHhcCCcHHHHHHHHHHHHHHHHHHHH-----H-c-c---chHHHHHHHHHHHHHH
Confidence 344444556777899999 6899999999999988888 54444422 1 1 1 1223345556677888
Q ss_pred HHHHHhcCCChhhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHH
Q 029438 84 VNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCA 129 (193)
Q Consensus 84 ~i~i~kDi~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~ 129 (193)
++++.||+||+|+||+.|++|+|+++|+|++.+++.....+.....
T Consensus 169 ~~~~~~~~~D~~~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~ 214 (279)
T PRK09573 169 SREIVKDIEDIEGDLKENVITLPIKYGIKKSWYIAKILLILAIVLS 214 (279)
T ss_pred HHHHHhhhhhhhhHHHCCCccccHHhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999876655555443
No 26
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=99.54 E-value=2.7e-13 Score=120.01 Aligned_cols=153 Identities=20% Similarity=0.173 Sum_probs=100.4
Q ss_pred HHHHHHHHHhcCCCCcchhhhhhhhhHHHHHHHhh-hhhhhHHHHHHHHHhcCC-----CCChHHHHHHHHHHHHHHHHH
Q 029438 12 ILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMG-LTGLPFYMHTQQYVLGRP-----FVITRPLILMGAIMSIFAFVN 85 (193)
Q Consensus 12 ~~~l~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~-iv~lg~~~h~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~i 85 (193)
.+++++...|+ . +||+..++++.+....+ ....|... +.|.. ...+.+.+.+....++|+.+.
T Consensus 125 ~~~~~~~~~Y~-----~-~KR~t~~~~~~lg~~~~~~~~~G~~a-----~~g~~~~~~~~~l~~~~~~l~~~~~lw~~~~ 193 (300)
T PRK13106 125 PIVALIAMSYP-----Y-MKRYTAFANYHLASIQGLAVFSGAVA-----VLGLYANSLIQVLLRVPWLFVIGTILWAAGF 193 (300)
T ss_pred HHHHHHHHHHh-----H-HhcCCcchHHHHHHHHHHHHHHHHHH-----HcCCcccchhhhhhHHHHHHHHHHHHHHHHH
Confidence 34556677887 3 79999999988877777 44444422 11211 012223344455677899999
Q ss_pred HHHhcCCChhhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhccC
Q 029438 86 GLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKKVDL 165 (193)
Q Consensus 86 ~i~kDi~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~h~~l~~~l~~~~~~~d~ 165 (193)
+++||.||+|+||+.|+||+|+++| |++.+++..+..++-......+..... +.... .+-++....+.+|.+.+|.
T Consensus 194 d~iya~~D~e~D~~~Gi~Slpv~~G-~~a~~~~~~~~~~~v~l~~~~~~~~~l--g~~y~-~~~~~~~~~l~~~~~~~~~ 269 (300)
T PRK13106 194 DLYNHIPDAEFDREMGLHSFAVVLG-KWALTFAGLNQLFSVVLDLLGDLYYGL--GPIAI-AATILHGLIMAYAYYLASK 269 (300)
T ss_pred HHHHHccchhhHHHCCCCccHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHhCC--cHHHH-HHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999 888888877776666655555543321 22211 1222334566677777766
Q ss_pred CChhHHHHHHHHHHH
Q 029438 166 DNFESTFGFYMLIWK 180 (193)
Q Consensus 166 ~~~~a~~~fY~fiW~ 180 (193)
+ ++-.+.|.+..|.
T Consensus 270 ~-~~~~~~F~~n~~i 283 (300)
T PRK13106 270 K-GDFGRAFYYNIYS 283 (300)
T ss_pred c-hHHHHHHHHccHH
Confidence 6 5556777665554
No 27
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=99.54 E-value=4.2e-13 Score=118.09 Aligned_cols=155 Identities=19% Similarity=0.110 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHHHhcCCCCcchhhhhhhhhHHHHHHHhhhhhhhHHHHHHHHHhcCCCCChH-HHHHHHHHHHHHHHHH
Q 029438 7 LLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGLTGLPFYMHTQQYVLGRPFVITR-PLILMGAIMSIFAFVN 85 (193)
Q Consensus 7 l~~~~~~~l~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~iv~lg~~~h~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~i 85 (193)
.+....+++++...|+ . +||+..++.+......+ ++...+. .++.| . .+. +...+.....+|+.+-
T Consensus 116 ~~~l~~~~~~~~~~Y~-----~-~KR~t~~~~~~lg~~~~---~~~l~g~-~av~g-~--~~~~~~~~l~~~~~~W~~~~ 182 (289)
T PLN02809 116 SRILGASSLLLVFTYP-----L-MKRFTFWPQAFLGLTFN---WGALLGW-AAVKG-S--LDPAVVLPLYASGVCWTLVY 182 (289)
T ss_pred HHHHHHHHHHHHHHHh-----H-HHhcCcchHHHHHHHHH---HHHHHHH-HHHhC-C--CChHHHHHHHHHHHHHHHHH
Confidence 3445556788889998 3 99999988865333222 3332221 12223 1 222 2322455566678888
Q ss_pred HHHhcCCChhhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhccC
Q 029438 86 GLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKKVDL 165 (193)
Q Consensus 86 ~i~kDi~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~h~~l~~~l~~~~~~~d~ 165 (193)
+++.+.||+|+||+.|++|+|+++|+|+..+++. +..+++...+..|... ..+.... +++++.+..+++|.+.+|.
T Consensus 183 d~~ya~~D~e~D~~~Gi~sl~v~~G~~~~~~i~~-~~~~~~~~l~~~g~~~--~~~~~~~-~~~~~~~~~l~~~~~~v~~ 258 (289)
T PLN02809 183 DTIYAHQDKEDDLKVGVKSTALRFGDDTKLWLTG-FGAASIGGLALSGYNA--GLGWPYY-AGLAAAAGHLAWQIQTVDL 258 (289)
T ss_pred HHHHHHhchhhHHhCCCcccchhhcHHHHHHHHH-HHHHHHHHHHHHHHHh--cCcHHHH-HHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999997777774 5555565555555433 2344433 4788888899999999999
Q ss_pred CChhHHHH-HHHHH
Q 029438 166 DNFESTFG-FYMLI 178 (193)
Q Consensus 166 ~~~~a~~~-fY~fi 178 (193)
+|+++..+ |.+..
T Consensus 259 ~~~~~~~~~F~~n~ 272 (289)
T PLN02809 259 SSRADCNRKFVSNK 272 (289)
T ss_pred CCHHHHHHHHHhCC
Confidence 99887643 44433
No 28
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=99.53 E-value=6.4e-13 Score=115.23 Aligned_cols=102 Identities=21% Similarity=0.273 Sum_probs=74.7
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCcchhhhhhhhhHHHHHHHhh-hhhhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHH
Q 029438 5 PPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMG-LTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAF 83 (193)
Q Consensus 5 ~~l~~~~~~~l~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~-iv~lg~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 83 (193)
+..+....++.+++++|| .|+|+++.+++..+....| ....|... + + . .+...+. ..+.+++.+
T Consensus 104 ~~~~~~~~~~~~~~~~Y~-----~~~k~~~~lg~~~vg~~~g~~~~~g~~a-----~-~-~--~~~~~~~-~~~~fl~~~ 168 (277)
T PRK12883 104 IEAFLFALGAYVLMFLYA-----WKLKPLPFIGNVVVALLTGATPIYGAIA-----V-G-R--IGLAGYL-AICAFLVNV 168 (277)
T ss_pred HHHHHHHHHHHHHHHHHh-----hcccCCcchhhHHHHHHHHHHHHHHHHH-----h-c-c--ccHHHHH-HHHHHHHHH
Confidence 444555566778899999 6899999999998888887 43333321 1 2 1 2222222 233556678
Q ss_pred HHHHHhcCCChhhhHhcCCcchhHhhchhHHHHHHHHH
Q 029438 84 VNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNT 121 (193)
Q Consensus 84 ~i~i~kDi~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~l 121 (193)
.+++.||+||+||||+.|++|+|+++|+|++.+++...
T Consensus 169 ~~~~~~~~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~~ 206 (277)
T PRK12883 169 AREIMKDIEDIEGDKAKGAKTLPIIIGKKRAAYIGAIF 206 (277)
T ss_pred HHHHHhhhhhhccHHHcCCcCcChHhcHHHHHHHHHHH
Confidence 89999999999999999999999999999999876654
No 29
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=99.52 E-value=1e-12 Score=114.59 Aligned_cols=149 Identities=17% Similarity=0.113 Sum_probs=98.8
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCcchhhhhhhhhHHHHHHHhh-hhhhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHH
Q 029438 5 PPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMG-LTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAF 83 (193)
Q Consensus 5 ~~l~~~~~~~l~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~-iv~lg~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 83 (193)
+..+....++++++..|+ . .||...++........+ ....|+. ...| .++.+.+.+....++++.
T Consensus 114 ~~~~~~~~~~~~~~~~Y~-----~-~Kr~~~~~~~~~g~~~~~~~l~~~~-----a~~g---~~~~~~~~l~~~~~~w~~ 179 (285)
T PRK12847 114 KTTIYLSFIAVILIVLYP-----L-MKRFFYWPQLFLGFTFNMGILMAFA-----AVQN---QLDIEAILLYIGCIFWTI 179 (285)
T ss_pred HHHHHHHHHHHHHHHhcc-----c-cccCCcccHHHHHHHHHHHHHHHHH-----HHcC---CCcHHHHHHHHHHHHHHH
Confidence 455566667888899998 3 77777766654333333 2122221 1112 345566677788899999
Q ss_pred HHHHHhcCCChhhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhc
Q 029438 84 VNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKKV 163 (193)
Q Consensus 84 ~i~i~kDi~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~h~~l~~~l~~~~~~~ 163 (193)
+.++.+|+||+|+||+.|++|+|+++|+|++.+++.......++..+..-......+--. ..++.+..++++.+.+
T Consensus 180 ~~~~~~a~~D~e~D~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~y~----~~~~~~~~l~~~~~~~ 255 (285)
T PRK12847 180 GYDTIYAYQDKKDDLKIGVKSTAIYFGNKTRKYILRLYIISLILWLILGIISSLHNIFYL----AILAAAGIFYYQYKLL 255 (285)
T ss_pred HHHHHHHhccHhhHHHcCCchhHHHhccccHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH----HHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999988777666665443322221111111 2223345677777788
Q ss_pred cCCChhHH
Q 029438 164 DLDNFEST 171 (193)
Q Consensus 164 d~~~~~a~ 171 (193)
|.+|+++.
T Consensus 256 ~~~~~~~~ 263 (285)
T PRK12847 256 DFDNPANC 263 (285)
T ss_pred CCCCHHHH
Confidence 88876544
No 30
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=99.51 E-value=2.5e-12 Score=112.81 Aligned_cols=148 Identities=17% Similarity=0.142 Sum_probs=98.5
Q ss_pred HHHHHHHHHHhcCCCCcchhhhhhhhhHHHHHHHhh-hhhhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHh
Q 029438 11 QILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMG-LTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFVNGLLK 89 (193)
Q Consensus 11 ~~~~l~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~-iv~lg~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~i~k 89 (193)
..++++....|+ ..||+..++........+ ....|+.. +.| .++.+.+.+....++++.+.++++
T Consensus 114 ~~~~~~~~~~Y~------~~Kr~t~~~~~~lg~~~~~~~l~g~~a-----~~g---~~~~~~~ll~~~~~~w~~~~~~i~ 179 (284)
T PRK12888 114 APLAVAPLVVYP------YAKRFTNFPHAILGLAQAVGPVGAWIA-----VTG---TWSWPAVLLGLAVGLWIGGFDLIY 179 (284)
T ss_pred HHHHHHHHHHHH------HhhcccchhhHHHHHHHHHHHHHHHHH-----HcC---CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 335556677887 368888877765444444 22223211 112 245556667778889999999999
Q ss_pred cCCChhhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCChh
Q 029438 90 DLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKKVDLDNFE 169 (193)
Q Consensus 90 Di~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~h~~l~~~l~~~~~~~d~~~~~ 169 (193)
|+||+|+||+.|++|+|+++|+|++.+++..+..+.++..+..+......+.-. .+-++.+..+.+|.+.+|.+|++
T Consensus 180 a~~D~e~D~~~Gv~sl~v~~G~~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~y~---~~~~~~~~~l~~~~~~~~~~~~~ 256 (284)
T PRK12888 180 ACQDAEVDRRIGVRSVPARFGVRAALWASRVAHVVTFALFVWFGLAVGFGALWW---IGLAITAGAFAYEHAIVSPTDLS 256 (284)
T ss_pred HhhhHHHHHHCCCcCcchhhCchhHHHHHHHHHHHHHHHHHHHHHHhCCcHHHH---HHHHHHHHHHHHHHHHcCccCHH
Confidence 999999999999999999999999998777666666555444444332211111 22234556777888899998876
Q ss_pred HH-HHHH
Q 029438 170 ST-FGFY 175 (193)
Q Consensus 170 a~-~~fY 175 (193)
.. +.|+
T Consensus 257 ~~~~~ff 263 (284)
T PRK12888 257 RVNRAFF 263 (284)
T ss_pred HHHHHHH
Confidence 54 4644
No 31
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=99.48 E-value=2.9e-12 Score=111.85 Aligned_cols=150 Identities=18% Similarity=0.193 Sum_probs=92.2
Q ss_pred chHHHHHHHHHHHHHHHhcCCCCcchhhhhhhhhHHHHHHHhh-hhhhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHHH
Q 029438 4 SPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMG-LTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFA 82 (193)
Q Consensus 4 s~~l~~~~~~~l~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~-iv~lg~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~~ 82 (193)
++.......+++++.+.|| . .||+..++........+ ....|++ ++.| .++.+.+.+....++++
T Consensus 108 ~~~~~~l~~~~~~~~~~Y~-----~-~Kr~~~~~~~~~g~~~~~~~~~g~~-----a~~g---~~~~~~~ll~~~~~lw~ 173 (281)
T TIGR01474 108 NPLTILLGVASLALVATYP-----F-MKRITYWPQLVLGLAFGWGALMGWA-----AVTG---DLSTAAWVLYLANILWT 173 (281)
T ss_pred hHHHHHHHHHHHHHHHHhc-----h-hcccccccHHHHHHHHHHHHHHHHH-----HHcC---CCcHHHHHHHHHHHHHH
Confidence 3445556667888899998 3 89988877765443333 2222321 1222 34455555667788899
Q ss_pred HHHHHHhcCCChhhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 029438 83 FVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKK 162 (193)
Q Consensus 83 ~~i~i~kDi~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~h~~l~~~l~~~~~~ 162 (193)
.+.++++|+||+|+||+.|++|+|+++|+|++.+.+......... ....+.... .+.... ++-.+....+.++...
T Consensus 174 ~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~y~-~~~~~~~~~~~~~~~~ 249 (281)
T TIGR01474 174 LGYDTIYAMQDKEDDIKIGVKSTALRFGDNTKPWLGGLYALMILL-LALAGLIAG--LGPVYY-LGLAAAALLLIRQIAT 249 (281)
T ss_pred HHHHHHHHHhhHHhHHHcCCCcccHHhhhhhHHHHHHHHHHHHHH-HHHHHHHhC--CcHHHH-HHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999865544433332333 233333222 122222 2222334555566667
Q ss_pred ccCCChhHH
Q 029438 163 VDLDNFEST 171 (193)
Q Consensus 163 ~d~~~~~a~ 171 (193)
+|.+|+++.
T Consensus 250 ~~~~~~~~~ 258 (281)
T TIGR01474 250 LDIRDPENC 258 (281)
T ss_pred hCCCCHHHH
Confidence 676666543
No 32
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=99.47 E-value=6.1e-12 Score=110.65 Aligned_cols=145 Identities=21% Similarity=0.243 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHhcCCCCcchhhhhhhhhHHHHHHHhhhhhhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHH
Q 029438 8 LLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGLTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFVNGL 87 (193)
Q Consensus 8 ~~~~~~~l~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~iv~lg~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~i 87 (193)
.....++++....|+ . .||+..++........+..+++-+. ++.| .++.+.+.+....++|..+.++
T Consensus 114 ~~l~~~~~~~~~~Y~-----~-~Kr~t~~~~~~~g~~~~~~~l~g~~----a~~g---~~~~~~~ll~~~~~lw~~~~~~ 180 (291)
T PRK12886 114 LYLSPPALFFLLLYS-----Y-CKRFTALAHVVLGFCLALAPLGAWI----AIRG---TIELPAILLGLAVLFWVAGFDI 180 (291)
T ss_pred HHHHHHHHHHHHHHh-----h-hhccccccHHHHHHHHHHHHHHHHH----HHcC---CCcHHHHHHHHHHHHHHHHHHH
Confidence 333445677789999 2 7999998876555444422322221 1112 2345556667777889999999
Q ss_pred HhcCCChhhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 029438 88 LKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKKVDLDN 167 (193)
Q Consensus 88 ~kDi~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~h~~l~~~l~~~~~~~d~~~ 167 (193)
++++||.|+||+.|++|+|+++|++++.+++.......+......+..... +....+ +-++....+.++.+.++.+|
T Consensus 181 ~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~y~~-~~~~~~~~~l~~~~~~~~~~ 257 (291)
T PRK12886 181 LYALQDLEFDRKEGLHSIPAKLGVNGSLWIARVFHLLMIGFLFALGISAGL--GPWFLA-GLAVTGILLLYEHWLLRGGD 257 (291)
T ss_pred HHHhccHHhHHHcCCcCcchhcCchhHHHHHHHHHHHHHHHHHHHHHHhcC--cHHHHH-HHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999999999998876666666655555543321 111111 11122233335667777676
Q ss_pred h
Q 029438 168 F 168 (193)
Q Consensus 168 ~ 168 (193)
+
T Consensus 258 ~ 258 (291)
T PRK12886 258 L 258 (291)
T ss_pred h
Confidence 3
No 33
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=99.47 E-value=9.7e-12 Score=110.32 Aligned_cols=174 Identities=18% Similarity=0.183 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHhcCCCCcchhhhhhhhhHHHHHHHhh-hhhhhHHHHHHHHHhcCCCCChH--HHHHHHHHHHHHHHHH
Q 029438 9 LNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMG-LTGLPFYMHTQQYVLGRPFVITR--PLILMGAIMSIFAFVN 85 (193)
Q Consensus 9 ~~~~~~l~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~-iv~lg~~~h~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~i 85 (193)
....+++++...|| . +||+.++.+.......+ ....++. ++.+.+..+.. ..++.+...+++..+.
T Consensus 120 ~l~~~~~~~~~iY~-----~-~KR~t~~~~~vLGl~~~~~~l~~~~-----Av~~~~~~~~l~~~~~lw~~~~~~~~~g~ 188 (300)
T PRK12876 120 SLAVLSTLLMIIYP-----Y-TKRVTFLCHWILGLVYYLAILMNFF-----AIIETPLSFSLFCMASLWGISFGMIIAAN 188 (300)
T ss_pred HHHHHHHHHHHHHH-----h-HhcCCchhHHHHHHHHHHHHHHHHH-----HHhcCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 34446777778998 4 99999988864333333 2222221 22231111100 2233344556677788
Q ss_pred HHHhcCCChhhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhccC
Q 029438 86 GLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKKVDL 165 (193)
Q Consensus 86 ~i~kDi~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~h~~l~~~l~~~~~~~d~ 165 (193)
+++++.||+|+||+.|++|+|+++|++++.+++..+..+.-+..+..+......+.-...++.-........+|.+.+|.
T Consensus 189 DiiYa~qD~e~D~~~Gl~Slpv~fG~~~a~~ia~~~~~l~~~~l~~~g~~~~l~~~~y~~~~~~~~~~l~~~~~~~~~~~ 268 (300)
T PRK12876 189 DIIYAIQDLEFDRKEGLFSIPARFGEKKAIRIASANLIASAIAYLLIGYFVSNKKIFYLCSLVPLTVILKTIKHYSLIDK 268 (300)
T ss_pred HHHHHHcCHhhHHHcCCccchHHHCchhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999998877776666555544445544332221111122212222334566566677
Q ss_pred CChhHHHHHHHH-HHH--HHHHHHHhhhhcC
Q 029438 166 DNFESTFGFYML-IWK--LTFVEYILIHFLR 193 (193)
Q Consensus 166 ~~~~a~~~fY~f-iW~--lf~~ey~l~p~~~ 193 (193)
++++.+..|++. .|- .+++..+.-|.+|
T Consensus 269 ~~~~~~~~~F~~N~~ig~~~~~~~~~~~~~~ 299 (300)
T PRK12876 269 KKSTLEQKFFLGNIYLALSFFVNMIGLFLLR 299 (300)
T ss_pred CchHHHHHHHHhcCHHHHHHHHHHHHHHccC
Confidence 767666554443 543 5566665555544
No 34
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=99.46 E-value=5.9e-12 Score=110.90 Aligned_cols=149 Identities=14% Similarity=0.061 Sum_probs=100.2
Q ss_pred HHHHHhcCCCCcchhhhhhhhhHHHHHHHhh-hhhhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhcCCCh
Q 029438 16 LCGCAYSLPLPFLRWKSHTFMAPLCLVITMG-LTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFVNGLLKDLPDV 94 (193)
Q Consensus 16 ~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~-iv~lg~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~i~kDi~Dv 94 (193)
.....|+ ..+||+..+.+..+....| ....|+. ++.| ...+....+.+....++|+.+-++++|.||+
T Consensus 116 ~~l~~~y-----p~~KR~t~~~~~~lG~~~g~~~l~g~~-----Av~g-~~~~~~~~~~l~~~~~~W~~g~D~iYa~qD~ 184 (286)
T PRK12895 116 IFLFIID-----PFLKRYTAWRHIYMGSIIGLGVLAGYL-----AVIP-AFPYNLLIYIIFISSSLWIAGFDIIYVIPDI 184 (286)
T ss_pred HHHHHHH-----HHHHhCccccHHHHHHHHHhHHHHHHH-----HHcC-CCCchHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 3344555 4899999988876665555 3222331 2222 2222233445667788899999999999999
Q ss_pred hhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCChhHH-HH
Q 029438 95 EGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKKVDLDNFEST-FG 173 (193)
Q Consensus 95 eGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~h~~l~~~l~~~~~~~d~~~~~a~-~~ 173 (193)
|+||+.|++|+|+++|+|++.+++..+..++....+..|.... +.. --++-++.+..+.+|.+.+|.+|+++. ..
T Consensus 185 e~D~~~Gv~S~a~~fG~~~~~~i~~~~~~~~~~~~~~~g~~~~---~~~-y~~~~~~~~~~l~~q~~~~~~~~~~~~~~~ 260 (286)
T PRK12895 185 EYDKINGLKTIMNTYGIKNGLYISDIFHISSLILFWISGIYIR---TLW-YLAALIIIYTLVIYQHLIIDPRNPINKRMS 260 (286)
T ss_pred hhHHHcCCCchHHHHCCccHHHHHHHHHHHHHHHHHHHHHHHh---hHH-HHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 9999999999999999999988876666665555555554432 222 223445556778889899999888776 44
Q ss_pred -HHHHHH
Q 029438 174 -FYMLIW 179 (193)
Q Consensus 174 -fY~fiW 179 (193)
|-+.-|
T Consensus 261 ~F~~N~~ 267 (286)
T PRK12895 261 FFNANSF 267 (286)
T ss_pred HHHHcCH
Confidence 444433
No 35
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=99.44 E-value=1.1e-11 Score=109.04 Aligned_cols=146 Identities=22% Similarity=0.194 Sum_probs=94.0
Q ss_pred HHHHHHHHHhcCCCCcchhhhhhhhhHHHHHHHhh-hhhhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhc
Q 029438 12 ILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMG-LTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFVNGLLKD 90 (193)
Q Consensus 12 ~~~l~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~-iv~lg~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~i~kD 90 (193)
...++....|| . +||+..++.+......+ ....|+. ++.| ..+.+.+.+....++|+.+.+++++
T Consensus 123 ~~~~~~~~~Y~-----~-~KR~t~~~~~~~g~~~~~~~l~G~~-----av~g---~~~~~~~~l~~~~~~w~~~~~~~~a 188 (291)
T PRK12874 123 FPFLIVLGGYS-----Y-FKRFSSLAHLVLGLSLGLAPIAGVV-----AVLG---EIPLWSVFLALGVMFWVAGFDLLYS 188 (291)
T ss_pred HHHHHHHHHHh-----h-hcccccccHHHHHHHHHHHHHHHHH-----HHcC---CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666788999 2 79999988876665555 3333332 2222 2344445566677899999999999
Q ss_pred CCChhhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCChhH
Q 029438 91 LPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKKVDLDNFES 170 (193)
Q Consensus 91 i~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~h~~l~~~l~~~~~~~d~~~~~a 170 (193)
++|+|+||+.|++|+|+++|+|++.+++.....+..+.....+......+- ..++-.+.+..+++|.+.++.+++++
T Consensus 189 ~~D~~~D~~~Gi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~ 265 (291)
T PRK12874 189 LQDMEFDKKRGLHSIPSKFGEKATLFISRLFHLLAVLFWLLFVWCAHLGLF---AYLGVIVSALILLYEHYLVRKDFKKI 265 (291)
T ss_pred hccHHHHHHcCCCcccHHhhhHhHHHHHHHHHHHHHHHHHHHHHHhcchHH---HHHHHHHHHHHHHHHHHHhcCCChHH
Confidence 999999999999999999999999887655444433333333322221111 22233344466777777776666655
Q ss_pred HHHH
Q 029438 171 TFGF 174 (193)
Q Consensus 171 ~~~f 174 (193)
.+.|
T Consensus 266 ~~~f 269 (291)
T PRK12874 266 DKAF 269 (291)
T ss_pred HHHH
Confidence 4443
No 36
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=99.43 E-value=4.7e-12 Score=111.27 Aligned_cols=152 Identities=18% Similarity=0.147 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHhcCCCCcchhhhhhhhhHHHHHHHhh-hhhhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHH
Q 029438 10 NQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMG-LTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFVNGLL 88 (193)
Q Consensus 10 ~~~~~l~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~-iv~lg~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~i~ 88 (193)
....++++...|+ . .||+..++.+......+ .+..|+. .+.| ..+.+.+.+....++++.+.+++
T Consensus 120 l~~~~~~~~~~Y~-----~-~KR~t~~~~~~lg~~~~~~~l~g~~-----a~~g---~~~~~~~~l~~~~~lw~~~~d~~ 185 (290)
T PRK12870 120 LCVAAVPVIFLYP-----L-AKRVFPVPQLVLAIAWGFAVLISWS-----AVTG---HLDLGTWLLWAATVFWTLGFDTV 185 (290)
T ss_pred HHHHHHHHHHHhh-----h-hhhccccceeeehHHHHhHHHHHHH-----HHcC---CCCHHHHHHHHHHHHHHHHHHHH
Confidence 3445667788998 3 56666666654444444 3222221 1212 23455566777889999999999
Q ss_pred hcCCChhhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhc--cCC
Q 029438 89 KDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKKV--DLD 166 (193)
Q Consensus 89 kDi~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~h~~l~~~l~~~~~~~--d~~ 166 (193)
+++||+|+||+.|++|+|+++|+|++.+++.... +........+.... .+.... .+-.+....+.+|...+ |.+
T Consensus 186 ~a~~D~e~D~~~G~~slav~~G~~~~~~~~~~~~-~~~~~l~~~~~~~~--~~~~y~-~~~~~~~~~l~~~~~~~~~~~~ 261 (290)
T PRK12870 186 YAMSDREDDLRIGVNSSAIFFGRYAPEAIGLFFA-LTVGFLAILGVLLE--LHLPFW-IGLAIAAVLWARQYRRLRQANL 261 (290)
T ss_pred HHhhhHhhHHHCCCcchhHHhccccHHHHHHHHH-HHHHHHHHHHHHhC--CcHHHH-HHHHHHHHHHHHHHHHhcccCC
Confidence 9999999999999999999999999988776322 22222223333222 111111 12223335556666666 777
Q ss_pred ChhHH-HHHHHHHH
Q 029438 167 NFEST-FGFYMLIW 179 (193)
Q Consensus 167 ~~~a~-~~fY~fiW 179 (193)
|++.. +-|.+..|
T Consensus 262 ~~~~~~~~F~~n~~ 275 (290)
T PRK12870 262 PPLAYGQLFLQNVW 275 (290)
T ss_pred ChHHHHHHHHHhhH
Confidence 77655 44444444
No 37
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=99.41 E-value=2.2e-11 Score=106.27 Aligned_cols=151 Identities=15% Similarity=0.114 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHhcCCCCcchhhhhhhhhHHHHHHHhh-hhhhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHH
Q 029438 8 LLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMG-LTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFVNG 86 (193)
Q Consensus 8 ~~~~~~~l~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~-iv~lg~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~ 86 (193)
.+...+++++.+.|+ . .||+..++.+......| .+..|+.. + . ..++.+.+.+....+++.....
T Consensus 114 ~~l~~~~~~~~~~Y~-----~-~Kr~~~~~~~~~g~~~g~~~~~g~~a--~----~--~~~~~~~~~l~~~~~~w~~~~~ 179 (282)
T PRK12848 114 IWLSVAALALAWIYP-----F-MKRYTHLPQVVLGAAFGWGIPMAFAA--V----Q--GSVPLEAWLLFLANILWTVAYD 179 (282)
T ss_pred HHHHHHHHHHHHHHH-----h-HHhcCcccHHHHHHHHHHHHHHHHHH--H----h--CCCcHHHHHHHHHHHHHHHHHH
Confidence 334446677788996 3 57777666665444444 33333321 1 1 2344555666677788888889
Q ss_pred HHhcCCChhhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 029438 87 LLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKKVDLD 166 (193)
Q Consensus 87 i~kDi~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~h~~l~~~l~~~~~~~d~~ 166 (193)
..++++|.|+||+.|++|+|+++|+|++.+++.. ..+........+..... +.... ++-.+....+.++.+.+|.+
T Consensus 180 ~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~y~-~~~~~~~~~~~~~~~~~~~~ 255 (282)
T PRK12848 180 TQYAMVDRDDDLKIGIKSTAILFGRYDKLIIGLL-QLATLALLAWAGWLLGL--GWAYY-WGLLVAAALFVYQQKLIRDR 255 (282)
T ss_pred HHHHhccHhhHHHcCCccccHHhccccHHHHHHH-HHHHHHHHHHHHHHhcC--cHHHH-HHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999998887643 33333323333332221 22211 22234446677778888888
Q ss_pred ChhHH-HHHHH
Q 029438 167 NFEST-FGFYM 176 (193)
Q Consensus 167 ~~~a~-~~fY~ 176 (193)
|+++. +.|++
T Consensus 256 ~~~~~~~~F~~ 266 (282)
T PRK12848 256 EREACFKAFLN 266 (282)
T ss_pred CHHHHHHHHHh
Confidence 87654 44444
No 38
>PRK13592 ubiA prenyltransferase; Provisional
Probab=99.35 E-value=4.3e-11 Score=106.09 Aligned_cols=110 Identities=16% Similarity=0.188 Sum_probs=80.9
Q ss_pred HHHHHHHHHh-----cCCCCcchhhhhhhhhHHHHHHHhh-hhhhh--HHH-HHHHHHhcCCCCChHHHHHHHHHHHHHH
Q 029438 12 ILFFLCGCAY-----SLPLPFLRWKSHTFMAPLCLVITMG-LTGLP--FYM-HTQQYVLGRPFVITRPLILMGAIMSIFA 82 (193)
Q Consensus 12 ~~~l~l~~~Y-----S~~~PplRlKr~p~l~~l~I~~v~~-iv~lg--~~~-h~~~~~~~~~~~~~~~~~~~~~~~~l~~ 82 (193)
....+..+.| + .++|+.|+.+|+.++...+ .+..| ++. .++....|.| ......+.+.+..++.+
T Consensus 115 i~~~~i~~lY~~lm~a-----~~~K~~~l~gNl~Va~ltg~~f~~g~~~~~~~fg~~~~g~~-~~~~~~~~l~l~afl~~ 188 (299)
T PRK13592 115 VGWFLFLYIYGTLMSF-----WFFKRDKIQNSLPLALVTHNPVMMILNLYTISFVCYKYNLP-LLSLPTVLLAFTMYFPS 188 (299)
T ss_pred HHHHHHHHHHHHHHHH-----HHHcccCCCcchhhhhhccchhhhchhhhhhhhhhhhcccc-hhhHHHHHHHHHHHHHH
Confidence 3556678899 8 8999999999999999998 55333 221 1122222322 12222245567888899
Q ss_pred HHHHHHhcCCChhhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHH
Q 029438 83 FVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCA 129 (193)
Q Consensus 83 ~~i~i~kDi~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~ 129 (193)
.++|+.||+|| ||||++ .+|+|+++|+|++.+++..+..+..+..
T Consensus 189 l~rEI~KdieD-~gd~~~-~~Tlpi~~G~kkA~~ia~~l~ii~v~~s 233 (299)
T PRK13592 189 LIWEVCRKIRA-PKDETE-YVTYSKLFGYKKATRFIEVVTLLDILTN 233 (299)
T ss_pred HHHHHHHhhcC-CccccC-CeeechhccchhHHHHHHHHHHHHHHHh
Confidence 99999999999 899976 9999999999999999998877766643
No 39
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=99.34 E-value=1.3e-10 Score=103.44 Aligned_cols=154 Identities=16% Similarity=0.123 Sum_probs=91.6
Q ss_pred chHHHHHHHHHHHHHHHhcCCCCcchhhhhhhhhHHHHHHHhh-hhhhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHHH
Q 029438 4 SPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMG-LTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFA 82 (193)
Q Consensus 4 s~~l~~~~~~~l~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~-iv~lg~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~~ 82 (193)
+|+.+....+++++...|+ . .||+...........-+ ....|++ .+ .| .++.+.+.+....++++
T Consensus 140 ~~~~~~l~~~~~~~~~~Y~-----~-~KR~t~~~~~~~Gl~~~~~~l~g~~--a~---~g---~~~~~~~~l~~~~~~w~ 205 (314)
T PRK12878 140 NWFAIALGIASLAIVAAYP-----F-MKRITWWPQFFLGLAFSWGALMGWA--AH---FG---SLSLAAVLLYAGSIAWT 205 (314)
T ss_pred hHHHHHHHHHHHHHHHHHH-----H-HHhcCCcchHHHHHHHHHHHHHHHH--HH---hC---CCchHHHHHHHHHHHHH
Confidence 3555556667888899998 2 77755544332211122 1112321 11 12 23444455666778899
Q ss_pred HHHHHHhcCCChhhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 029438 83 FVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKK 162 (193)
Q Consensus 83 ~~i~i~kDi~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~h~~l~~~l~~~~~~ 162 (193)
.+.+.+++++|+|+||+.|++|+|+++|++++.+++...........+ .+......+.-.+..+. +...+.+|.+.
T Consensus 206 ~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~---~~~~l~~~~~~ 281 (314)
T PRK12878 206 IGYDTIYAHQDKEDDALIGVKSTARLFGDHTKTWLVLFYGLAVLLMGL-AFWLAGVPLLALLGLLA---AAAHLAWQIAR 281 (314)
T ss_pred HHHHHHHHhhhHhhHHHcCCcccchHhchhhHHHHHHHHHHHHHHHHH-HHHHhcCcHHHHHHHHH---HHHHHHHHHHH
Confidence 999999999999999999999999999999999887555544443322 22222211211212222 22345677777
Q ss_pred ccCCChhHHHHHH
Q 029438 163 VDLDNFESTFGFY 175 (193)
Q Consensus 163 ~d~~~~~a~~~fY 175 (193)
+|.+|+++.+.++
T Consensus 282 ~~~~~~~~~~~~F 294 (314)
T PRK12878 282 LDIDDPDQCLRLF 294 (314)
T ss_pred cccCChHHHHHHH
Confidence 7777776544433
No 40
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=99.31 E-value=1.2e-10 Score=102.85 Aligned_cols=101 Identities=13% Similarity=0.062 Sum_probs=70.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Q 029438 67 ITRPLILMGAIMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGASSSFMINKLVTI 146 (193)
Q Consensus 67 ~~~~~~~~~~~~~l~~~~i~i~kDi~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~ 146 (193)
.+.+.+....+.++++.+.++.||++|.|+|++.|++|+|+++|++++.++...+..+..+..+ +... ..+.....
T Consensus 173 ~~~~~~ll~~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~~t~~~i~~~~~l~~l~~~--~~~~--~~g~~~~~ 248 (297)
T PRK12871 173 PDMTALLYMVFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGMKGTMYWVTGFTALHFLAAI--FFLR--ELGPIALY 248 (297)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeechHHHHHHHHHHHHHHHHHHH--HHHH--HhhHHHHH
Confidence 4455666777888999999999999999999999999999999999998776655555554333 2222 22222222
Q ss_pred HHHHHHHHHHHHHhhhccCCChhHH
Q 029438 147 IGHSILALILWIQSKKVDLDNFEST 171 (193)
Q Consensus 147 ~~h~~l~~~l~~~~~~~d~~~~~a~ 171 (193)
..-++.+..+.+|.+..+.+|+++.
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (297)
T PRK12871 249 GFLAGFVLLAGANLYLWKEKSQDAG 273 (297)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 2224455567777787777776653
No 41
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=99.24 E-value=8.5e-10 Score=97.98 Aligned_cols=168 Identities=20% Similarity=0.166 Sum_probs=116.9
Q ss_pred chHHHHHHHHHHHHHHHhcCCCCcchhhhhhhhhHHHHHHHhh-hhhhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHHH
Q 029438 4 SPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMG-LTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFA 82 (193)
Q Consensus 4 s~~l~~~~~~~l~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~-iv~lg~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~~ 82 (193)
+|..++...++++.|+.|+ -+|.++++.|+ |=+......| +...|.+ +.| .+.++......++...+.+
T Consensus 120 ~~~~l~lG~l~~~~g~~YT--gGp~PlgY~gL-GEi~~~vffG~l~v~g~~-yiq------t~~~~~~~ll~slp~gil~ 189 (303)
T COG1575 120 DWLVLLLGLLCIAAGILYT--GGPFPLGYMGL-GEIFVGVFFGPLIVLGAY-YIQ------TGRLSWAILLPSLPVGILI 189 (303)
T ss_pred hhHHHHHHHHHHHheeeec--cCCcCcccCCH-HHHHHHHHHHHHHHHHHH-HHh------cccchHHHHHHHHHHHHHH
Confidence 4565677779999999999 69999999999 6554444556 4444443 233 2345667888889999999
Q ss_pred HHHHHHhcCCChhhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 029438 83 FVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKK 162 (193)
Q Consensus 83 ~~i~i~kDi~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~h~~l~~~l~~~~~~ 162 (193)
..+...|+++|+|-|++.|.+|+|+++|++++..+-..++..+|+..++..+....++... ..+. .+....+..|.
T Consensus 190 ~~Il~aNNirDie~D~~~gk~TLavrLG~~~~~~l~~~l~~~a~l~~~~~~i~~~~~~~~l-l~ll---~~Pl~ir~~r~ 265 (303)
T COG1575 190 ANILLANNLRDIEEDIRNGKYTLAVRLGRKNARKLYAALLVVAYLAIVIFVILGLFPVWGL-LFLL---ALPLAIRAARP 265 (303)
T ss_pred HHHHHhcccccchhHHhcCCcceeeeeccHhHHHHHHHHHHHHHHHHHHHHHHHhchHHHH-HHHH---HHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999997766444333222222 2111 22233333333
Q ss_pred ccC-CChh------HHHHHHHHHHHHHHHH
Q 029438 163 VDL-DNFE------STFGFYMLIWKLTFVE 185 (193)
Q Consensus 163 ~d~-~~~~------a~~~fY~fiW~lf~~e 185 (193)
+-- ++|. .+.+.-+.+|.+-++-
T Consensus 266 v~~~~~~~~~~p~l~~~~~~~~~~~~l~~~ 295 (303)
T COG1575 266 VRQNQVPATLVPMLKNTVKANLLWNLLLAV 295 (303)
T ss_pred HHhccCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 211 2222 3456677888765543
No 42
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=99.23 E-value=1.2e-09 Score=95.45 Aligned_cols=155 Identities=13% Similarity=0.125 Sum_probs=92.9
Q ss_pred HHHHHHHHhcCCCCcchhhhhhhhhHHHHHHHhh-hhhhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhcC
Q 029438 13 LFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMG-LTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFVNGLLKDL 91 (193)
Q Consensus 13 ~~l~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~-iv~lg~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~i~kDi 91 (193)
..++....|| .++||+++ .+..+....| ..+++-+.. ++ | .++.+.+.+....+++..+.....+.
T Consensus 115 ~~~~~~~~Yt-----~~lKr~~~-~~~~v~~~~g~~~~l~g~~a-~~---g---~~~~~~~ll~~~~~~w~~~~~~~l~~ 181 (279)
T PRK12869 115 GWFFYAVVYT-----IWLKPRTW-LNIVIGGFAGNAAALAGYAS-GT---G---SLDLEAVLLSFLIYLWTPGHIWSLAL 181 (279)
T ss_pred HHHHHHhhhC-----cccccCCh-HHHHHHHHHHHHHHHHHHHH-Hh---C---CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456778899 79999998 4766666666 444433321 11 2 34455566677777788887766788
Q ss_pred CChhhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCChhHH
Q 029438 92 PDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKKVDLDNFEST 171 (193)
Q Consensus 92 ~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~h~~l~~~l~~~~~~~d~~~~~a~ 171 (193)
+|.|.||+.|++|+|+++|+|++.+.+.....+.-......+. ...+.......-...+.++..+.+..+.++++
T Consensus 182 ~d~edd~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~---~~~g~~y~~~~~~~~~~~l~~~~~~~~~~~~~-- 256 (279)
T PRK12869 182 KYREDYRRAGVPMLPAVVGEKTSVRAISISNALMIPYILLLYL---YYIGLIGLILVAILSAALMATSIRALLNPTKE-- 256 (279)
T ss_pred HhHHhHHHcCCeecceeecHHHHHHHHHHHHHHHHHHHHHHHH---hhccHHHHHHHHHHHHHHHHHHHHHhhCCChH--
Confidence 8999999999999999999999988766554433332222222 11223323222223334555655665444433
Q ss_pred HHHHHHHHHHHHHH
Q 029438 172 FGFYMLIWKLTFVE 185 (193)
Q Consensus 172 ~~fY~fiW~lf~~e 185 (193)
..+.+|.+.++|.-
T Consensus 257 ~~~~~f~~s~~~l~ 270 (279)
T PRK12869 257 EAWKMFKASSPYLA 270 (279)
T ss_pred HHHHHHHHHHHHHH
Confidence 23344555555443
No 43
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=99.05 E-value=1.1e-08 Score=90.04 Aligned_cols=149 Identities=13% Similarity=0.046 Sum_probs=85.7
Q ss_pred HHHHhcCCCCcchhhhhhhhhHHHHHHHhh-hh-hhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhcCCCh
Q 029438 17 CGCAYSLPLPFLRWKSHTFMAPLCLVITMG-LT-GLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFVNGLLKDLPDV 94 (193)
Q Consensus 17 l~~~YS~~~PplRlKr~p~l~~l~I~~v~~-iv-~lg~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~i~kDi~Dv 94 (193)
....|| .++||++. ++..+....+ .- ..|++. +.| .++.+.+++....+++.........++|.
T Consensus 127 ~~~~Ys-----~~lKr~~~-~~~~v~~~~g~~~~l~g~~a-----~~g---~~~~~~~~l~~~~~lw~~~~~~~~~~~d~ 192 (296)
T PRK04375 127 YVVVYT-----LWLKRRTP-QNIVIGGAAGAMPPLIGWAA-----VTG---SLSWEALILFLIIFLWTPPHFWALAIFRK 192 (296)
T ss_pred HHHHhc-----cchhcCCc-cchHHHHHHHHhHHHHHHHH-----hCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466898 68999995 7777776665 32 222211 112 34555566677788888777766667778
Q ss_pred hhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCCh-hHHHH
Q 029438 95 EGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKKVDLDNF-ESTFG 173 (193)
Q Consensus 95 eGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~h~~l~~~l~~~~~~~d~~~~-~a~~~ 173 (193)
|.||+.|++|+|+++|+|++.+++.....+.-...++...... .+.......-.+-+..+.++.+.++.+|+ .+.+.
T Consensus 193 ~D~~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 270 (296)
T PRK04375 193 DDYAAAGIPMLPVVKGIRVTKRQILLYTVLLVAVSLLPVLLGM--AGLLYLVVALLLGAWFLYYAWRLYRKDDRKWARKL 270 (296)
T ss_pred hhHHHcCCCccceeeCHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHH
Confidence 8899999999999999999888665444433332232222211 11111111111222334444555555544 34556
Q ss_pred HHHHHHHH
Q 029438 174 FYMLIWKL 181 (193)
Q Consensus 174 fY~fiW~l 181 (193)
|+.-.|-.
T Consensus 271 F~~s~~~~ 278 (296)
T PRK04375 271 FRYSINYL 278 (296)
T ss_pred HHHHHHHH
Confidence 66655543
No 44
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=99.05 E-value=9.5e-09 Score=91.06 Aligned_cols=156 Identities=13% Similarity=0.043 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHhcCCCCcchhhhhhhhhHHHHHHHhh-hhhhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHH
Q 029438 9 LNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMG-LTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFVNGL 87 (193)
Q Consensus 9 ~~~~~~l~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~-iv~lg~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~i 87 (193)
....++++....|+ . .||+-....+......+ -...|+ .++.| ...+....+++....++|+.+-++
T Consensus 121 ~l~~~~~~~~~~Y~-----~-~KR~t~~~~~vlg~~~a~~~l~gw-----~Av~g-~~~~~~~~l~l~~~~~~W~~~~d~ 188 (294)
T PRK12873 121 SLAFLALPPILIYP-----S-AKRWFAYPQAILALCWGFAVLIPW-----AAAEG-SLNGGWPLLFCWLATLLWTFGFDT 188 (294)
T ss_pred HHHHHHHHHHHHHH-----H-HHhccccchHHHHHHHHhHHHHHH-----HHHhC-CCchhHHHHHHHHHHHHHHHHHHH
Confidence 33345566788998 3 77776655543332222 112222 12223 222222344445677889999999
Q ss_pred HhcCCChhhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 029438 88 LKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKKVDLDN 167 (193)
Q Consensus 88 ~kDi~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~h~~l~~~l~~~~~~~d~~~ 167 (193)
+.+++|.|+||+.|++|+|+++|++ +...+..+..+........|..... +.... ++-++.+..+.+|.+.+|.++
T Consensus 189 iyA~qD~edD~~~Gv~slpv~~G~~-~~~~~~~~~~~~~~ll~~~g~~~~l--~~~y~-~~~~~~~~~l~~~~~~~~~~~ 264 (294)
T PRK12873 189 VYAMADRRDDAKIGLNSSALSLGSN-ALKTVQICYFLTSIFLALAAFIAQV--GFIFW-PFWLIASIGMQRDILKLFPEK 264 (294)
T ss_pred HHHHHhHhhHHHcCCcccchhcChh-hHHHHHHHHHHHHHHHHHHHHHhCC--cHHHH-HHHHHHHHHHHHHHHHhCcCc
Confidence 9999999999999999999999974 5555555555554444444544332 22221 122233456667778888776
Q ss_pred h--h-HHHHHHHHHHH
Q 029438 168 F--E-STFGFYMLIWK 180 (193)
Q Consensus 168 ~--~-a~~~fY~fiW~ 180 (193)
+ + -.+.|++..|-
T Consensus 265 ~~~~~c~~~F~~n~~~ 280 (294)
T PRK12873 265 QSIKTIGNHFSNQVIL 280 (294)
T ss_pred ccHHHHHHHHHhccHH
Confidence 3 3 34777766663
No 45
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=99.04 E-value=2.5e-08 Score=86.75 Aligned_cols=159 Identities=16% Similarity=0.043 Sum_probs=88.3
Q ss_pred HHHHHHHHHH-HHHhcCCCCcchhhhhhhhhHHHHHHHhh-hhhhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHH
Q 029438 8 LLNQILFFLC-GCAYSLPLPFLRWKSHTFMAPLCLVITMG-LTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFVN 85 (193)
Q Consensus 8 ~~~~~~~l~l-~~~YS~~~PplRlKr~p~l~~l~I~~v~~-iv~lg~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i 85 (193)
.+...+++++ +++|| ..+||++.. +..+....| ..+++-+. .++ | .++.+.+.+....+++...-
T Consensus 108 ~~l~~~~~~~~~~~Yt-----~~lKr~~~~-~~~v~~~~g~~~~l~g~~-a~~---g---~~~~~~~~l~~~~~~w~~~~ 174 (280)
T TIGR01473 108 ALLGLFGIFFYVIVYT-----IWLKRRTPQ-NTVIGGFAGAVPPLIGWA-AVT---G---SISLGAWLLFAIIFLWQPPH 174 (280)
T ss_pred HHHHHHHHHHHHhhcC-----hhhccCCch-hHHHHHHHHHHHHHHHHH-Hhc---C---CCCHHHHHHHHHHHHHHHHH
Confidence 3333455544 78999 568998885 555555555 33333321 111 2 23444555555666666665
Q ss_pred HHHhcCCChhhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhccC
Q 029438 86 GLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKKVDL 165 (193)
Q Consensus 86 ~i~kDi~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~h~~l~~~l~~~~~~~d~ 165 (193)
...-..+|.|.||+.|++|+|+++|+|++.+++............+.+.... .+......+-.+.+..+.++.+..|.
T Consensus 175 ~~~~a~~~~~dd~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~--~~~~y~~~~~~~~~~~l~~~~~~~~~ 252 (280)
T TIGR01473 175 FWALALKYKDDYRAAGIPMLPVVKGERITKRQIALYTAALLPVSLLLAFLGG--TGWLYLIVATLLGALFLYLAFKFYRD 252 (280)
T ss_pred HHHHHHHhhhhHHHCCCccCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4445678999999999999999999999887766544443333333232211 12222222222233445556666655
Q ss_pred C-Ch-hHHHHHHHHHHHH
Q 029438 166 D-NF-ESTFGFYMLIWKL 181 (193)
Q Consensus 166 ~-~~-~a~~~fY~fiW~l 181 (193)
+ |+ ++.+.|+.-.|-+
T Consensus 253 ~~~~~~~~~~f~~s~~~~ 270 (280)
T TIGR01473 253 PTDRKKARKLFKFSLIYL 270 (280)
T ss_pred CCcHHHHHHHHHHHHHHH
Confidence 5 33 2445555554443
No 46
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=98.91 E-value=1.8e-07 Score=83.12 Aligned_cols=90 Identities=13% Similarity=0.082 Sum_probs=67.2
Q ss_pred HHHHhcCCCCcchhhhhhhhhHHHHHHHhh-hhhhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhcCCChh
Q 029438 17 CGCAYSLPLPFLRWKSHTFMAPLCLVITMG-LTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFVNGLLKDLPDVE 95 (193)
Q Consensus 17 l~~~YS~~~PplRlKr~p~l~~l~I~~v~~-iv~lg~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~i~kDi~Dve 95 (193)
...+|| .++||+++.++.+.....+ -...|+. +.+ ...+...+.+...+++|...-....+++|.|
T Consensus 130 ~~~~Yt-----~~lKr~t~~~~~vgg~~ga~p~l~G~~------a~~--g~~~~~~~~l~~~~~~W~~~h~~~~ai~~~~ 196 (306)
T PRK13362 130 YVGVYS-----LYLKRNSVYGTLVGSLSGAMPPVVGYC------AVT--GQFDAGALILLLMFSLWQMPHSYAIAIFRFN 196 (306)
T ss_pred HHHHHh-----HHHhccCcHhHHHHHHHHHHHHHHHHH------HHc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 467899 8999999988775444444 2222221 112 2345566777888888999988889999999
Q ss_pred hhHhcCCcchhHhhchhHHHHHHH
Q 029438 96 GDKKFGMNTLCVLLGKEKVFPLCV 119 (193)
Q Consensus 96 GDr~~Gi~Tl~v~lG~~~~~~l~~ 119 (193)
.|++.|++|+|++.|+|++.+...
T Consensus 197 Dy~~aG~~~lpv~~G~~~t~~~~~ 220 (306)
T PRK13362 197 DYAAAGIPVLPVARGIAKTKLHIV 220 (306)
T ss_pred hHHHCCCeeeceecChHHHHHHHH
Confidence 999999999999999999987543
No 47
>PLN02776 prenyltransferase
Probab=97.08 E-value=0.11 Score=47.42 Aligned_cols=91 Identities=11% Similarity=0.078 Sum_probs=49.7
Q ss_pred HHHhcCCCCcchhhhhhhhhHHHHHHHhh-hhhhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhcCCChhh
Q 029438 18 GCAYSLPLPFLRWKSHTFMAPLCLVITMG-LTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFVNGLLKDLPDVEG 96 (193)
Q Consensus 18 ~~~YS~~~PplRlKr~p~l~~l~I~~v~~-iv~lg~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~i~kDi~DveG 96 (193)
...|+ . +||+..+ |..+.++.| +-+++-+. ++.| .++.+.+.+....++|...=-..=...|-|-
T Consensus 113 ~~vYt-----~-lKR~t~~-~~~lG~~~Ga~ppL~Gw~----Avtg---~~~~~~~~Lf~~~~~Wq~pHf~~la~~~~dD 178 (341)
T PLN02776 113 AFVYT-----P-LKQIHPA-NTWVGAVVGAIPPLMGWA----AASG---QLDAGAMVLAAALYFWQMPHFMALAYMCRDD 178 (341)
T ss_pred HHHHH-----h-HccCCch-hHHHHHHHHHHHHHHHHH----HHcC---CCCHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 44677 3 9999975 455555555 33332221 2222 3445555666666667662211112233347
Q ss_pred hHhcCCcchhHhh--chhHHHHHHHHHH
Q 029438 97 DKKFGMNTLCVLL--GKEKVFPLCVNTM 122 (193)
Q Consensus 97 Dr~~Gi~Tl~v~l--G~~~~~~l~~~ll 122 (193)
|++.|++.+|+.- |++.+..+.....
T Consensus 179 y~~ag~pmlpv~~~~g~~ta~~i~~~~~ 206 (341)
T PLN02776 179 YAAGGYRMLSLADATGRRTALVALRNCL 206 (341)
T ss_pred HHhCCCcccCccccchHHHHHHHHHHHH
Confidence 8899999999866 4555555544333
No 48
>KOG4581 consensus Predicted membrane protein [Function unknown]
Probab=96.48 E-value=0.0091 Score=52.29 Aligned_cols=77 Identities=17% Similarity=0.139 Sum_probs=61.5
Q ss_pred HHHHHHhcCCChhhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 029438 83 FVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKK 162 (193)
Q Consensus 83 ~~i~i~kDi~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~h~~l~~~l~~~~~~ 162 (193)
=+|.=-|+-+|.|.||+.||-|+++.+|+.....+...++...|....+.+...+.++.-..+.++.+ .++=.|.|.
T Consensus 243 eailhsnntrd~dndr~agivtlailig~t~s~ily~~llf~py~lf~i~~~~~si~~~lplltip~a---fqiek~frn 319 (359)
T KOG4581|consen 243 EAILHSNNTRDADNDREAGIVTLAILIGPTASHILYAMLLFAPYLLFFIFALHCSISFALPLLTIPMA---FQIEKQFRN 319 (359)
T ss_pred HHHhccCCCcccccccccCeEEEEEeecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhchhH---HhHHHHhhh
Confidence 34445689999999999999999999999999999999999999999888888876655555556655 666555443
No 49
>PRK08238 hypothetical protein; Validated
Probab=95.99 E-value=0.055 Score=51.15 Aligned_cols=82 Identities=22% Similarity=0.284 Sum_probs=57.2
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCcchhhhhhhhhHHHHHHHhh-hhhhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHH
Q 029438 5 PPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMG-LTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAF 83 (193)
Q Consensus 5 ~~l~~~~~~~l~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~-iv~lg~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 83 (193)
+.....+...+++..+|| +++||.++++..+++...+ -+..|. ...+ .+.+.|++ .+..++..
T Consensus 295 ~~~~~~~~~~~~~~~~Ys-----~~lKr~~~~~~~~la~~~~lr~~~G~------~a~~----~~~s~wll-~~~~~~~l 358 (479)
T PRK08238 295 PAFLLVLLAYLALTLAYS-----LRLKRKVLVDVLTLAALYTLRIIAGA------AAIG----VALSFWLL-AFSMFFFL 358 (479)
T ss_pred HHHHHHHHHHHHHHHHhh-----HHhcCCccccchHHHHHHHHHHHHHH------HHhc----cCHHHHHH-HHHHHHHH
Confidence 444555667788889999 8999999999988776555 222222 2222 23444443 34445688
Q ss_pred HHHHHhcCCChhhhHhcCC
Q 029438 84 VNGLLKDLPDVEGDKKFGM 102 (193)
Q Consensus 84 ~i~i~kDi~DveGDr~~Gi 102 (193)
..++.|...|++++++.|-
T Consensus 359 ~la~~KR~~El~~~~~~~~ 377 (479)
T PRK08238 359 SLALVKRYTELRRALQRGK 377 (479)
T ss_pred HHHHHHhHHHHHHHHhcCC
Confidence 8899999999999999885
No 50
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=94.25 E-value=0.18 Score=44.97 Aligned_cols=37 Identities=22% Similarity=0.489 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCcchhhhhhhhhHHHHHHHhh
Q 029438 5 PPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMG 46 (193)
Q Consensus 5 ~~l~~~~~~~l~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~ 46 (193)
|...+.....+++.++|| .++||.|++++++++...+
T Consensus 115 ~~~~~~~~~~~~~~~~Ys-----~~lK~~~~~d~l~va~~~~ 151 (295)
T PRK12324 115 PKLALVLLVYLVLNLAYS-----FKLKHQPVLDVFCIASGFV 151 (295)
T ss_pred HHHHHHHHHHHHHHHHhh-----HHhcCCchhhHHHHHHHHH
Confidence 333444567788889999 8999999999998775555
No 51
>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]
Probab=93.56 E-value=0.43 Score=42.83 Aligned_cols=97 Identities=19% Similarity=0.077 Sum_probs=64.7
Q ss_pred HHHHHHHHHHhcCCChhhhHhcCCcchhHhhchhHHHHHHHH-HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 029438 79 SIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVN-TMLVGYGCALIAGASSSFMINKLVTIIGHSILALILW 157 (193)
Q Consensus 79 ~l~~~~i~i~kDi~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~-ll~~~y~~~i~~~~~~~~~~~~~~~~~~h~~l~~~l~ 157 (193)
..|++.-..+-.=||-+-|-+-|+++-+.|+|++.=.+++.. ...++.+ ...|..+...|.- ..+ -...+..+-
T Consensus 234 v~Wtl~YDTIYAHQDK~dDvk~gvkSTALrfG~nTK~wl~gf~a~~ia~L--a~aG~~s~q~~py-y~~--lg~~~~~L~ 308 (353)
T KOG1381|consen 234 VCWTLIYDTIYAHQDKRDDVKIGVKSTALRFGDNTKPWLSGFGAAQIASL--AAAGIASDQTWPY-YAA--LGAVAARLG 308 (353)
T ss_pred hhhhhhhhhhhhcccchhhhHhcchhhhhhcCCCCchHHhhhhHHHHHHH--HHhhhccCCCchH-HHH--HHHHHHHHH
Confidence 346666667778899999999999999999999977777542 2222333 3445555555522 233 223356778
Q ss_pred HHhhhccCCChhHH-HHHHHHHHH
Q 029438 158 IQSKKVDLDNFEST-FGFYMLIWK 180 (193)
Q Consensus 158 ~~~~~~d~~~~~a~-~~fY~fiW~ 180 (193)
.|-..||++|+... +.|-..+|-
T Consensus 309 ~~i~~vdiDnp~dC~k~f~sN~nt 332 (353)
T KOG1381|consen 309 SQIYKVDIDNPSDCWKKFKSNSNT 332 (353)
T ss_pred hheeeeecCChHHHHHHHHhcCcc
Confidence 88899999998865 344444443
No 52
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=86.39 E-value=5.1 Score=34.91 Aligned_cols=33 Identities=21% Similarity=0.084 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCC
Q 029438 70 PLILMGAIMSIFAFVNGLLKDLPDVEGDKKFGM 102 (193)
Q Consensus 70 ~~~~~~~~~~l~~~~i~i~kDi~DveGDr~~Gi 102 (193)
......+.++....+..++||+.|.|=||+.--
T Consensus 48 ~~~l~~l~~~~~~~ag~~iND~~D~eiD~~n~r 80 (289)
T COG0382 48 LLLLAFLAFFLARSAGYVINDLADREIDRINPR 80 (289)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHhhhhccCCCCC
Confidence 344445555666777789999999999998765
No 53
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=86.35 E-value=8.1 Score=33.27 Aligned_cols=52 Identities=17% Similarity=0.078 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCChhhhHhcCCcchhHhhc---hhHHHHHHHHHHHHH
Q 029438 73 LMGAIMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLG---KEKVFPLCVNTMLVG 125 (193)
Q Consensus 73 ~~~~~~~l~~~~i~i~kDi~DveGDr~~Gi~Tl~v~lG---~~~~~~l~~~ll~~~ 125 (193)
...+...+...+..++||..|.|=|++. -+.=|..-| ++.+..++..+..++
T Consensus 41 l~~l~~~l~~~a~~~~Nd~~D~~~D~~~-r~~Rpl~~G~is~~~a~~~~~~~~~~~ 95 (279)
T PRK12884 41 LGFLTAFFASGSANALNDYFDYEVDRIN-RPDRPIPSGRISRREALLLAILLFILG 95 (279)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHhhhhcc-CCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 3334445556666899999999999988 355666666 445555554444333
No 54
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=85.56 E-value=25 Score=31.27 Aligned_cols=49 Identities=10% Similarity=0.024 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHhcCCChhhhHhcC---CcchhH-hhchhHHHHHHHHHHHH
Q 029438 76 AIMSIFAFVNGLLKDLPDVEGDKKFG---MNTLCV-LLGKEKVFPLCVNTMLV 124 (193)
Q Consensus 76 ~~~~l~~~~i~i~kDi~DveGDr~~G---i~Tl~v-~lG~~~~~~l~~~ll~~ 124 (193)
+..++.+.+-.++||..|.|=||+.. -|-+|. ++.++.+..++..+..+
T Consensus 54 lg~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~RPlpsG~is~~~A~~~~~~l~~~ 106 (306)
T PRK13362 54 IGLSLVVASGCALNNCIDRDIDAKMQRTRNRVTVTGEISLGEALGFGLALGVA 106 (306)
T ss_pred HHHHHHHHHHHHHhChHHhCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 34445556678999999999998653 344443 34455555555444333
No 55
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=85.45 E-value=13 Score=32.07 Aligned_cols=31 Identities=23% Similarity=0.096 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChhhhHhcCC
Q 029438 72 ILMGAIMSIFAFVNGLLKDLPDVEGDKKFGM 102 (193)
Q Consensus 72 ~~~~~~~~l~~~~i~i~kDi~DveGDr~~Gi 102 (193)
+......++...+...+||..|.|-|+...-
T Consensus 39 ~~~~~~~~~~~~~~~~~N~~~D~~~D~~n~~ 69 (285)
T PRK12872 39 WLLLLITFLIAAAVYIINYLTDLEEDIINKP 69 (285)
T ss_pred HHHHHHHHHHHHHHHHhhhhcCCchhhcCCC
Confidence 3444556667778899999999999987543
No 56
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=83.93 E-value=8.4 Score=34.13 Aligned_cols=54 Identities=13% Similarity=0.062 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHhcCCChhhhHhcC-CcchhH-hhchhHHHHHHHHHHHHHHHHH
Q 029438 76 AIMSIFAFVNGLLKDLPDVEGDKKFG-MNTLCV-LLGKEKVFPLCVNTMLVGYGCA 129 (193)
Q Consensus 76 ~~~~l~~~~i~i~kDi~DveGDr~~G-i~Tl~v-~lG~~~~~~l~~~ll~~~y~~~ 129 (193)
....+...+..++||.-|.|-|++.+ -|.+|. ++.+|.+..++..+..++...+
T Consensus 61 l~~~l~~~~~n~~NDy~D~d~D~~~~~~Rpi~~G~is~~~a~~~~~~l~~~~~~lg 116 (306)
T TIGR02056 61 LSGPCLTGYTQTINDFYDRDIDAINEPYRPIPSGAISEPEVITQIVLLFIAGIAIA 116 (306)
T ss_pred HHHHHHHHHHHHHHhHhhhhhhccCCCCCCCCCCccCHHHHHHHHHHHHHHHHHHH
Confidence 34456666778999999999998766 233332 3456666666665555544433
No 57
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=83.50 E-value=23 Score=32.01 Aligned_cols=84 Identities=23% Similarity=0.206 Sum_probs=47.0
Q ss_pred HHHHHHhcCCCCcchhhhhhhhhHHHHHHHhh-hhhh-hHHHHHHHHHhcCCCCChHHHHHHHHHHHHHH------HHHH
Q 029438 15 FLCGCAYSLPLPFLRWKSHTFMAPLCLVITMG-LTGL-PFYMHTQQYVLGRPFVITRPLILMGAIMSIFA------FVNG 86 (193)
Q Consensus 15 l~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~-iv~l-g~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~~------~~i~ 86 (193)
++=..+|| .-+||+-. =|.+|-+..| .=++ |+. ++- .+.+.+-+.+.+.+++|. .++.
T Consensus 133 ~~Yv~vYT-----~~lKR~T~-~NiviGg~aGa~PpliGwa-----Avt---g~~~~~a~~Lf~IiF~WtPpHfwALAl~ 198 (304)
T COG0109 133 FFYVVVYT-----LWLKRRTP-QNIVIGGFAGAMPPLIGWA-----AVT---GSISLGAILLFAIIFLWTPPHFWALALK 198 (304)
T ss_pred HHHhhhhh-----hhccCCcc-cceeeeeccccccccceee-----eee---CCCCchHHHHHHHHHHhccHHHHHHHHH
Confidence 34456788 78899876 3444444444 2222 221 111 223333444445555443 3333
Q ss_pred HHhcCCChhhhHhcCCcchhHhhchhHHHHHH
Q 029438 87 LLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLC 118 (193)
Q Consensus 87 i~kDi~DveGDr~~Gi~Tl~v~lG~~~~~~l~ 118 (193)
.-+| =|+.||--+|++-|++++++-.
T Consensus 199 ~~~D------Y~~AgiPMlPvv~G~~~t~~~I 224 (304)
T COG0109 199 YKDD------YKAAGIPMLPVVKGERRTKRQI 224 (304)
T ss_pred HHHH------HHHcCCCcccccccHHHHHHHH
Confidence 3322 3688999999999999988753
No 58
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=79.44 E-value=20 Score=29.61 Aligned_cols=28 Identities=25% Similarity=0.177 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCChhhhHhc
Q 029438 73 LMGAIMSIFAFVNGLLKDLPDVEGDKKF 100 (193)
Q Consensus 73 ~~~~~~~l~~~~i~i~kDi~DveGDr~~ 100 (193)
.......+........||..|.|=||..
T Consensus 27 ~~~l~~~~~~~~~~~~Nd~~D~~~D~~~ 54 (257)
T PF01040_consen 27 LGLLAVFLLQLAVYLLNDYFDYEEDRIH 54 (257)
T ss_pred HHHHHHHHHHHHHHHhhChhhhhcCccc
Confidence 3334444677778899999999999995
No 59
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=79.33 E-value=21 Score=30.92 Aligned_cols=53 Identities=15% Similarity=0.206 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCChhhhHhcCCcchhH---hhchhHHHHHHHHHHHHHH
Q 029438 73 LMGAIMSIFAFVNGLLKDLPDVEGDKKFGMNTLCV---LLGKEKVFPLCVNTMLVGY 126 (193)
Q Consensus 73 ~~~~~~~l~~~~i~i~kDi~DveGDr~~Gi~Tl~v---~lG~~~~~~l~~~ll~~~y 126 (193)
......++...+-.++||.-|.|-||+.. +.=|. ++.+|.+..++..+..++.
T Consensus 41 l~~l~~~l~~~~~~~iNd~~D~~iD~~~~-~~Rpl~sG~is~~~a~~~~~~l~~~~~ 96 (279)
T PRK09573 41 LAALVVFLVCAGGNVINDIYDIEIDKINK-PERPIPSGRISLKEAKIFSITLFIVGL 96 (279)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccC-CCCCcCCCccCHHHHHHHHHHHHHHHH
Confidence 33344445566668999999999999764 44444 3445666665554444433
No 60
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=79.17 E-value=12 Score=33.37 Aligned_cols=51 Identities=16% Similarity=0.265 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHhcCCChhhhHhc---CCcchhH-hhchhHHHHHHHHHHHHHHH
Q 029438 77 IMSIFAFVNGLLKDLPDVEGDKKF---GMNTLCV-LLGKEKVFPLCVNTMLVGYG 127 (193)
Q Consensus 77 ~~~l~~~~i~i~kDi~DveGDr~~---Gi~Tl~v-~lG~~~~~~l~~~ll~~~y~ 127 (193)
.+++.+.+..++||+-|.|=||++ .-|-+|. ++.++.+..++..+..++.+
T Consensus 54 ~~~l~~sa~y~iND~~D~e~Dr~~prk~~RPlasG~is~~~A~~~~~~l~~~~l~ 108 (295)
T PRK12324 54 LFCLASSAVYLVNDIRDVEADRLHPTKRNRPIASGVVSVSLAYILAVVLLVASLA 108 (295)
T ss_pred HHHHHHHHHHHHHhHHHHHhhccCCCCCCCCCCCCccCHHHHHHHHHHHHHHHHH
Confidence 344556667899999999999995 2333333 34556665555555544433
No 61
>PRK13592 ubiA prenyltransferase; Provisional
Probab=76.88 E-value=51 Score=29.74 Aligned_cols=74 Identities=11% Similarity=-0.042 Sum_probs=40.9
Q ss_pred HHHHHHHhcCCCCChH--HHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCC-cchhH-hhchhHHHHHHHHHHHHHHH
Q 029438 54 MHTQQYVLGRPFVITR--PLILMGAIMSIFAFVNGLLKDLPDVEGDKKFGM-NTLCV-LLGKEKVFPLCVNTMLVGYG 127 (193)
Q Consensus 54 ~h~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~i~i~kDi~DveGDr~~Gi-~Tl~v-~lG~~~~~~l~~~ll~~~y~ 127 (193)
.++-+.+......|+. +........++++.+-.++||..|.|=||.+.= |=+|. +.-+|.+...+..+..++..
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~l~~~~vf~~~~~gniiNDy~D~EIDrIN~P~RPLPsG~VS~~~A~~~si~L~~~~l~ 106 (299)
T PRK13592 29 IYMITLLSNHISSFRIGIQEFVGVFTVFGFWMILRIADDFKDYETDRRLFPHRALPSGRVKKKDLAIALSFIVAVSVL 106 (299)
T ss_pred HHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhHHHhhhcCCCCCCCcCCCCHHHHHHHHHHHHHHHHH
Confidence 3444545443444433 333333334556677789999999999997642 12221 23455566666555444433
No 62
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=73.66 E-value=15 Score=31.79 Aligned_cols=47 Identities=9% Similarity=-0.103 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhcCCChhhhHhcCCcchhH---hhchhHHHHHHHHHHHH
Q 029438 77 IMSIFAFVNGLLKDLPDVEGDKKFGMNTLCV---LLGKEKVFPLCVNTMLV 124 (193)
Q Consensus 77 ~~~l~~~~i~i~kDi~DveGDr~~Gi~Tl~v---~lG~~~~~~l~~~ll~~ 124 (193)
...+...+..++||.-|.|-|++.+ ++=|+ ++-+|.+..++..+..+
T Consensus 46 ~~~l~~~~~n~~Nd~~D~~~D~~~~-~~Rpi~~G~is~~~a~~~~~~~~~~ 95 (283)
T TIGR01476 46 AGPLGTGFSQSINDYFDRDVDAINE-PQRPIPSGIISLREVRWNWLVLTVA 95 (283)
T ss_pred HHHHHHHHHHHHHhHhhhCcccCCC-CCCCCCCCCcCHHHHHHHHHHHHHH
Confidence 3334556668999999999999765 33333 33455555555444333
No 63
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=73.29 E-value=30 Score=29.88 Aligned_cols=50 Identities=14% Similarity=0.046 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHhcCCChhhhHhcCCcchhHhhc---hhHHHHHHHHHHHHH
Q 029438 75 GAIMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLG---KEKVFPLCVNTMLVG 125 (193)
Q Consensus 75 ~~~~~l~~~~i~i~kDi~DveGDr~~Gi~Tl~v~lG---~~~~~~l~~~ll~~~ 125 (193)
.+...+...+-.++||.-|.|-||++. +.=|..-| ++.+..++..+..++
T Consensus 44 ~l~~~l~~~~~~~~Nd~~D~~iD~~~~-~~Rpl~~G~is~~~a~~~~~~l~~~g 96 (276)
T PRK12882 44 FAAVFLATGAGNAINDYFDREIDRINR-PDRPIPSGAVSPRGALAFSILLFAAG 96 (276)
T ss_pred HHHHHHHHHHHHHHHHHhhhccccccC-CCCCcCCCCcCHHHHHHHHHHHHHHH
Confidence 333444555567999999999999755 55555554 555555555554444
No 64
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=71.63 E-value=34 Score=30.44 Aligned_cols=31 Identities=23% Similarity=0.294 Sum_probs=20.4
Q ss_pred HhcCCChhhhHhcCCcchhHhhc---hhHHHHHHH
Q 029438 88 LKDLPDVEGDKKFGMNTLCVLLG---KEKVFPLCV 119 (193)
Q Consensus 88 ~kDi~DveGDr~~Gi~Tl~v~lG---~~~~~~l~~ 119 (193)
+||..|.|-||... ++-|+.=| +|.+..++.
T Consensus 72 iNd~~D~~iD~ink-p~rPiasG~ls~~~a~~~~~ 105 (308)
T PRK12887 72 LNQLTDIEIDRINK-PHLPLAAGEFSRRQGQRIVI 105 (308)
T ss_pred HhhhhhHHHHhcCC-CCCCcCCcccCHHHHHHHHH
Confidence 99999999999654 56665334 444444433
No 65
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=71.60 E-value=27 Score=30.24 Aligned_cols=47 Identities=13% Similarity=0.048 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCChhhhHhc---CCcchhH-hhchhHHHHHHH
Q 029438 73 LMGAIMSIFAFVNGLLKDLPDVEGDKKF---GMNTLCV-LLGKEKVFPLCV 119 (193)
Q Consensus 73 ~~~~~~~l~~~~i~i~kDi~DveGDr~~---Gi~Tl~v-~lG~~~~~~l~~ 119 (193)
...+...+...+-.++||.-|.|-||+. .-|.+|. ++.+|.+..++.
T Consensus 40 l~~l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl~sG~is~~~a~~~~~ 90 (282)
T TIGR01475 40 LILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPLVSGLISKKEARTMII 90 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCCccCCCCCCCCCcCHHHHHHHHH
Confidence 3344455566677899999999999986 2344443 455566655554
No 66
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=69.22 E-value=44 Score=29.45 Aligned_cols=19 Identities=16% Similarity=0.034 Sum_probs=15.5
Q ss_pred HHHhcCCChhhhHhcCCcc
Q 029438 86 GLLKDLPDVEGDKKFGMNT 104 (193)
Q Consensus 86 ~i~kDi~DveGDr~~Gi~T 104 (193)
-.+||.-|.|-||+..-|.
T Consensus 62 y~iND~~D~D~Dr~~prk~ 80 (282)
T PRK12875 62 YGVNDVFDADTDELNPKKD 80 (282)
T ss_pred hcchhhhhhhccccCCCcc
Confidence 4479999999999876664
No 67
>PRK08238 hypothetical protein; Validated
Probab=68.80 E-value=33 Score=32.55 Aligned_cols=52 Identities=21% Similarity=0.142 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHhcCCChhhhHhcCC-cchhH---hhchhHHHHHHHHHHHHHHH
Q 029438 76 AIMSIFAFVNGLLKDLPDVEGDKKFGM-NTLCV---LLGKEKVFPLCVNTMLVGYG 127 (193)
Q Consensus 76 ~~~~l~~~~i~i~kDi~DveGDr~~Gi-~Tl~v---~lG~~~~~~l~~~ll~~~y~ 127 (193)
+.+++.+.+..++||+-|.|=||+.-- +.=|. ++..+.+..++..++.++.+
T Consensus 233 ~~~~l~~sa~~~~ND~~D~e~Dr~~~rk~~RPlasG~is~~~A~~~~~~l~~~~~~ 288 (479)
T PRK08238 233 LAFSLCASAVYILNDLLDLEADRAHPRKRRRPFASGALPIPFGLAAAPLLLLAGLA 288 (479)
T ss_pred HHHHHHHHHHHHHHhhHHhhhhccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 344566667789999999999999732 22333 34455555555555444433
No 68
>PRK13595 ubiA prenyltransferase; Provisional
Probab=68.62 E-value=56 Score=29.24 Aligned_cols=52 Identities=23% Similarity=0.116 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHhcCCChhhhHhcCCcchhH---hhchhHHHHHHHHHHHHHH
Q 029438 74 MGAIMSIFAFVNGLLKDLPDVEGDKKFGMNTLCV---LLGKEKVFPLCVNTMLVGY 126 (193)
Q Consensus 74 ~~~~~~l~~~~i~i~kDi~DveGDr~~Gi~Tl~v---~lG~~~~~~l~~~ll~~~y 126 (193)
...+..-....+..+||.-|.|-|+++.- +=++ ++.++.+..++..+...+-
T Consensus 52 ~~~~~~p~n~~~~giND~fD~eiDa~Npr-~~~i~~G~is~~~~~~~~~~~~~~~~ 106 (292)
T PRK13595 52 LLYLTLPFNLLIYGLNDLADRETDAASPR-KGGWQGARLSPGEVRPLLRAVLLLNA 106 (292)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhccCCC-CCCCCcCccCHHHHHHHHHHHHHHHH
Confidence 33444555667789999999999985432 1222 4555555555444444443
No 69
>TIGR00791 gntP gluconate transporter. This family includes known gluconate transporters of E. coli and Bacillus species as well as an idonate transporter from E. coli.
Probab=67.14 E-value=1.1e+02 Score=28.39 Aligned_cols=95 Identities=18% Similarity=0.140 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHhcCCCCcchhhhhhhhhHHHHHHHhh-hhhhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHH
Q 029438 9 LNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMG-LTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFVNGL 87 (193)
Q Consensus 9 ~~~~~~l~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~-iv~lg~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~i 87 (193)
..+.+++.+...-. +|+|.||+++.+..+...+ ..........++...|-. .....+..+..+-..++-..+-
T Consensus 4 ~~~~~~i~~~~~~~-----~~~k~~~~ial~~~a~~~~l~~g~~~~~~~~~i~~g~g-~~~~~iglii~lg~~~g~~m~~ 77 (440)
T TIGR00791 4 VIVALGIVLLLLLI-----MKFKLNTFVALLVVSFGVGLASGMPLDKVVHSIEAGIG-GTLGFLALIVGLGAMLGKLLAD 77 (440)
T ss_pred HHHHHHHHHHHHHH-----HHHcccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667777777 9999999988765555555 333323322222111101 1112333333333344444433
Q ss_pred HhcCCChhhhHhcCCcchhHhhchhHHHH
Q 029438 88 LKDLPDVEGDKKFGMNTLCVLLGKEKVFP 116 (193)
Q Consensus 88 ~kDi~DveGDr~~Gi~Tl~v~lG~~~~~~ 116 (193)
.+..+.+. +++--++|+||..+
T Consensus 78 sGaa~~ia-------~~i~~~~g~~r~~~ 99 (440)
T TIGR00791 78 SGAAQRIA-------LTLLAKFGKSRVQW 99 (440)
T ss_pred cCHHHHHH-------HHHHHHhcccchHH
Confidence 33333332 56666788887654
No 70
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=66.30 E-value=40 Score=29.35 Aligned_cols=54 Identities=11% Similarity=0.028 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChhhhHhcC---CcchhH-hhchhHHHHHHHHHHHHH
Q 029438 72 ILMGAIMSIFAFVNGLLKDLPDVEGDKKFG---MNTLCV-LLGKEKVFPLCVNTMLVG 125 (193)
Q Consensus 72 ~~~~~~~~l~~~~i~i~kDi~DveGDr~~G---i~Tl~v-~lG~~~~~~l~~~ll~~~ 125 (193)
........+...+-.++||.-|.|-||+.. -|.+|. ++.++.+..++..+..++
T Consensus 39 ~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~~ 96 (279)
T PRK12869 39 IPLLIGGTLASGGSAAFNHGIERDIDKVMSRTSKRPTPVGLVNRKEALAVGSALSALG 96 (279)
T ss_pred HHHHHHHHHHHHHHHHHhchHhcCCCCCCCCCCCCCcCCCCcCHHHHHHHHHHHHHHH
Confidence 333444455566668999999999999854 344443 345566655555444433
No 71
>PLN00012 chlorophyll synthetase; Provisional
Probab=65.66 E-value=50 Score=30.46 Aligned_cols=45 Identities=16% Similarity=0.002 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhcCCChhhhHhcCCcchhHhhc---hhHHHHHHHHHHH
Q 029438 78 MSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLG---KEKVFPLCVNTML 123 (193)
Q Consensus 78 ~~l~~~~i~i~kDi~DveGDr~~Gi~Tl~v~lG---~~~~~~l~~~ll~ 123 (193)
..+...+..++||.-|.|-|++.+ +.=|+.=| ++.+...+..++.
T Consensus 132 ~~L~~~~an~iNDy~D~~iD~~~~-~~Rpi~sG~Is~~~al~~~~~l~~ 179 (375)
T PLN00012 132 GPFLTGYTQTINDWYDREIDAINE-PYRPIPSGAISENEVITQIWVLLL 179 (375)
T ss_pred HHHHHHHHHHHHCeecHhhhccCC-CCCCcCCCccCHHHHHHHHHHHHH
Confidence 344455567999999999999876 44444434 4444444333333
No 72
>PRK13591 ubiA prenyltransferase; Provisional
Probab=65.11 E-value=61 Score=29.28 Aligned_cols=69 Identities=17% Similarity=0.087 Sum_probs=38.8
Q ss_pred HHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHHHHHHh
Q 029438 55 HTQQYVLGRPFVITRPLILMGAIMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGA 134 (193)
Q Consensus 55 h~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~i~kDi~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~i~~~~ 134 (193)
|....+.|.+..++ ......+...+..++||.-|.|-||-+. |-+.|++ .+.+..+..++.+.++.+..
T Consensus 49 ~~a~lL~g~~~~~~-----~~~~~~L~~~s~~~iNd~~D~eiD~IN~----P~r~~~s--~~~a~~ls~la~llGl~La~ 117 (307)
T PRK13591 49 HIAFLLLGLQSSIL-----TCIAGGLIIYSVYTLDRALDSEEDAVNR----SELIGSN--KKIGLLVSLLAFLLGTYILA 117 (307)
T ss_pred HHHHHHhCCCcchH-----HHHHHHHHHHHHHHHhhhccchhhhccC----ccccccC--HHHHHHHHHHHHHHHHHHHH
Confidence 44444555443332 2334555678889999999999999853 3444433 33344444444444444333
No 73
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=63.72 E-value=50 Score=28.45 Aligned_cols=43 Identities=12% Similarity=-0.014 Sum_probs=27.7
Q ss_pred HHHHHHHHHhcCCChhhhHhcCCcchhHh---hchhHHHHHHHHHHH
Q 029438 80 IFAFVNGLLKDLPDVEGDKKFGMNTLCVL---LGKEKVFPLCVNTML 123 (193)
Q Consensus 80 l~~~~i~i~kDi~DveGDr~~Gi~Tl~v~---lG~~~~~~l~~~ll~ 123 (193)
+...+..++||.-|.|=||.+. ++=|.. +-++.+..++..+..
T Consensus 48 ~~~~a~~~~Nd~~D~~~D~~n~-~~Rpl~sG~is~~~a~~~~~~l~~ 93 (277)
T PRK12883 48 LGCSGGNTINDYFDYEIDKINR-PNRPLPRGAMSRKAALYYSLLLFA 93 (277)
T ss_pred HHHHHHhHHHhhhhHhccccCC-CCCCCCCCccCHHHHHHHHHHHHH
Confidence 3345668999999999999765 444444 345555555544433
No 74
>PRK10034 fructuronate transporter; Provisional
Probab=61.49 E-value=43 Score=31.66 Aligned_cols=95 Identities=15% Similarity=0.082 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhcCCCCcchhhhhhhhhHHHHHHHhh-hhhhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHH
Q 029438 10 NQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMG-LTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFVNGLL 88 (193)
Q Consensus 10 ~~~~~l~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~-iv~lg~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~i~ 88 (193)
.+.+++.+...=. +|+|-||+++-++.+...+ ..........++...| -..+..++..+..+-.+++-..|.-
T Consensus 8 ~~~~~i~~li~li-----~k~k~~~fialli~al~~gl~~Gm~~~~~~~~i~~G-~g~~~~si~lii~lGailG~lLe~S 81 (447)
T PRK10034 8 WVVFGIGLMLVLN-----LKFKINSMVALLVAALSVGMLAGMDLMKLLHTMKAG-FGNTLGELAIIVVFGAVIGKLMVDS 81 (447)
T ss_pred HHHHHHHHHHHHH-----HHhCccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3445555444445 8999999988776555555 3232232222222112 1112233333333444444444443
Q ss_pred hcCCChhhhHhcCCcchhHhhchhHHHHH
Q 029438 89 KDLPDVEGDKKFGMNTLCVLLGKEKVFPL 117 (193)
Q Consensus 89 kDi~DveGDr~~Gi~Tl~v~lG~~~~~~l 117 (193)
++.+.+. +++-.++|+||+.+.
T Consensus 82 Gaa~~Ia-------~~i~~~~G~kr~~~a 103 (447)
T PRK10034 82 GAAHQIA-------HTLLARLGLRYVQLS 103 (447)
T ss_pred CHHHHHH-------HHHHHHhCccchHHH
Confidence 3333333 455556666666543
No 75
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=61.40 E-value=55 Score=28.33 Aligned_cols=51 Identities=12% Similarity=0.019 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHhcCCChhhhHhcC---CcchhH-hhchhHHHHHHHHHHHH
Q 029438 74 MGAIMSIFAFVNGLLKDLPDVEGDKKFG---MNTLCV-LLGKEKVFPLCVNTMLV 124 (193)
Q Consensus 74 ~~~~~~l~~~~i~i~kDi~DveGDr~~G---i~Tl~v-~lG~~~~~~l~~~ll~~ 124 (193)
..+...+...+-.++||.-|.|=|++.. -|.+|. ++.+|.+..++..+..+
T Consensus 40 ~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~~~~~ 94 (280)
T TIGR01473 40 TLLGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVTGRISPREALAFGLLLGVL 94 (280)
T ss_pred HHHHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHH
Confidence 3334445555667999999999999743 344443 44556666665544433
No 76
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates
Probab=60.82 E-value=9 Score=31.61 Aligned_cols=39 Identities=33% Similarity=0.390 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhcCCChhhhH----------hcCCcchhHhhchhHHHHH
Q 029438 79 SIFAFVNGLLKDLPDVEGDK----------KFGMNTLCVLLGKEKVFPL 117 (193)
Q Consensus 79 ~l~~~~i~i~kDi~DveGDr----------~~Gi~Tl~v~lG~~~~~~l 117 (193)
.-.+.+..+.+|+.|+.+|. +.|..|+|....++.....
T Consensus 156 ~~lG~a~Qi~dd~~D~~~d~~~~gk~~~D~~~gr~tlp~~~~~~~~~~~ 204 (236)
T cd00867 156 RALGLAFQLTDDLLDVFGDAEELGKVGSDLREGRITLPVILARERAAEY 204 (236)
T ss_pred HHHHHHHHHHHHhccccCChHHHCccHHHHHcCCchHHHHHHHHHHHHH
Confidence 33455557999999999998 8999999999985444444
No 77
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=56.66 E-value=67 Score=28.51 Aligned_cols=46 Identities=17% Similarity=0.067 Sum_probs=29.8
Q ss_pred HHHHHHHHHhcCCChhhhHhcCCcchhH---hhchhHHHHHHHHHHHHHH
Q 029438 80 IFAFVNGLLKDLPDVEGDKKFGMNTLCV---LLGKEKVFPLCVNTMLVGY 126 (193)
Q Consensus 80 l~~~~i~i~kDi~DveGDr~~Gi~Tl~v---~lG~~~~~~l~~~ll~~~y 126 (193)
+...+..++||.-|.|-||+.+ ++=|+ ++.++.+..++..+..++.
T Consensus 76 l~~~~~~~~Nd~~D~~~D~~~~-~~Rpl~sG~is~~~a~~~~~~l~~~~~ 124 (314)
T PRK07566 76 LLCGTSQTLNDYFDREVDAINE-PYRPIPSGAISLRWVLYLIAVLTVLGL 124 (314)
T ss_pred HHHHHHHHHhhhhccCccccCC-CCCCCCCceeCHHHHHHHHHHHHHHHH
Confidence 3556668999999999999754 33343 3455666666555554433
No 78
>PRK10472 low affinity gluconate transporter; Provisional
Probab=53.11 E-value=1.7e+02 Score=27.78 Aligned_cols=36 Identities=19% Similarity=0.269 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcchhhhhhhhhHHHHHHHhh
Q 029438 6 PLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMG 46 (193)
Q Consensus 6 ~l~~~~~~~l~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~ 46 (193)
.+++...+++.+...-. .|+|.||+++.+..+..-+
T Consensus 5 ~ll~~~~~ai~~li~li-----~k~kl~~fialli~Alivg 40 (445)
T PRK10472 5 TLVLTAVGSVLLLLFLV-----MKARMHAFVALMVVSMGAG 40 (445)
T ss_pred HHHHHHHHHHHHHHHHH-----HHhCccHHHHHHHHHHHHH
Confidence 45566666777666666 8999999988765554444
No 79
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=52.16 E-value=95 Score=26.95 Aligned_cols=46 Identities=17% Similarity=0.226 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhcCCChhhhHhcC---CcchhH-hhchhHHHHHHHHHHHH
Q 029438 79 SIFAFVNGLLKDLPDVEGDKKFG---MNTLCV-LLGKEKVFPLCVNTMLV 124 (193)
Q Consensus 79 ~l~~~~i~i~kDi~DveGDr~~G---i~Tl~v-~lG~~~~~~l~~~ll~~ 124 (193)
.+...+-.++||.-|.|=||+.. -|.+|. ++.+|.+..++..+..+
T Consensus 55 ~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~l~~~ 104 (285)
T PRK12847 55 VLMRSAGCIINDIFDRKIDKHVARTKNRPLASGALSVKQALILLFILLLI 104 (285)
T ss_pred HHHHHHHHHHHhHHHhhhccCCCcccCCCCCCCCcCHHHHHHHHHHHHHH
Confidence 44555557999999999998633 233333 34455555555444333
No 80
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=51.56 E-value=1.5e+02 Score=26.29 Aligned_cols=46 Identities=20% Similarity=0.134 Sum_probs=26.9
Q ss_pred HHHHHHHHhcCCChhhhHhc------------CCcchhH-hhchhHHHHHHHHHHHHHHH
Q 029438 81 FAFVNGLLKDLPDVEGDKKF------------GMNTLCV-LLGKEKVFPLCVNTMLVGYG 127 (193)
Q Consensus 81 ~~~~i~i~kDi~DveGDr~~------------Gi~Tl~v-~lG~~~~~~l~~~ll~~~y~ 127 (193)
.+.+ .++||.-|.|=|++. .-|.+|. ++-+|.+..++..+..++.+
T Consensus 54 ~~ag-~~iND~~D~~~D~~~v~rtm~r~~~P~~~Rpl~sG~is~~~a~~~~i~l~~i~~~ 112 (297)
T PRK12871 54 FEAG-FVLNDYVDRKRDRLDVENTLTRYWRPFKERPIPSGKLSSKNAFALFILLAAVTSA 112 (297)
T ss_pred HHHH-HHHhhHHHHhcCcchHhhhhhccccCCCCCccCCCCcCHHHHHHHHHHHHHHHHH
Confidence 3444 599999999999752 1232222 44556666666555554433
No 81
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=48.64 E-value=1e+02 Score=27.07 Aligned_cols=46 Identities=15% Similarity=0.162 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhcCCChhhhHhcC---CcchhH-hhchhHHHHHHHHHHHH
Q 029438 79 SIFAFVNGLLKDLPDVEGDKKFG---MNTLCV-LLGKEKVFPLCVNTMLV 124 (193)
Q Consensus 79 ~l~~~~i~i~kDi~DveGDr~~G---i~Tl~v-~lG~~~~~~l~~~ll~~ 124 (193)
.+...+-.++||+.|.|=||+.. -|.+|. ++.+|.+..++..+..+
T Consensus 54 ~l~~aa~~~iNd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~l~~~ 103 (296)
T PRK04375 54 ALVAGAAGALNNYIDRDIDAKMERTKNRPLVTGRISPREALIFGLVLGVL 103 (296)
T ss_pred HHHHHHHHHHHhHHhhccCCCCCccCCCCCCCCCcCHHHHHHHHHHHHHH
Confidence 33444557999999999999743 333332 44566666665544433
No 82
>PRK09921 permease DsdX; Provisional
Probab=47.70 E-value=2.5e+02 Score=26.50 Aligned_cols=38 Identities=16% Similarity=0.173 Sum_probs=28.8
Q ss_pred chHHHHHHHHHHHHHHHhcCCCCcchhhhhhhhhHHHHHHHhh
Q 029438 4 SPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMG 46 (193)
Q Consensus 4 s~~l~~~~~~~l~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~ 46 (193)
...++..+.+++.+...-. +|+|.||+++-++.+...|
T Consensus 4 ~~~~l~~~~~~i~~l~~li-----~k~k~~~f~aLl~~ai~~g 41 (445)
T PRK09921 4 QIWVVSTLLISIVLIVLTI-----VKFKFHPFLALLLASFFVG 41 (445)
T ss_pred hHHHHHHHHHHHHHHHHHH-----HHHHHhHHHHHHHHHHHHH
Confidence 3456777888888888888 9999999977665554444
No 83
>PLN02776 prenyltransferase
Probab=47.59 E-value=1.9e+02 Score=26.40 Aligned_cols=49 Identities=16% Similarity=0.049 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHhcCCChhhhHhcCC---cchh-HhhchhHHHHHHHHHH
Q 029438 74 MGAIMSIFAFVNGLLKDLPDVEGDKKFGM---NTLC-VLLGKEKVFPLCVNTM 122 (193)
Q Consensus 74 ~~~~~~l~~~~i~i~kDi~DveGDr~~Gi---~Tl~-v~lG~~~~~~l~~~ll 122 (193)
.++-.++...+-.++||+-|.|=|++..- |-+| =++..+.+..++..+.
T Consensus 34 ~~lg~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris~~~A~~~~~~l~ 86 (341)
T PLN02776 34 TCAGTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRISVPHAVAWAVVVG 86 (341)
T ss_pred HHHHHHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 33444455556679999999999988542 2232 2344555554444333
No 84
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=45.94 E-value=1.5e+02 Score=26.69 Aligned_cols=46 Identities=17% Similarity=0.165 Sum_probs=30.0
Q ss_pred HHHHhcCCChhhhHhcCCcchhH---hhchhHHHHHHHHHHHHHHHHHHH
Q 029438 85 NGLLKDLPDVEGDKKFGMNTLCV---LLGKEKVFPLCVNTMLVGYGCALI 131 (193)
Q Consensus 85 i~i~kDi~DveGDr~~Gi~Tl~v---~lG~~~~~~l~~~ll~~~y~~~i~ 131 (193)
-.++||.-|.|=|+..+ +|=|+ ++-+|.+..++..+..++.+.++.
T Consensus 66 ~~~iND~~D~~~D~~n~-rtRpl~~G~is~~~al~~~~~l~~la~~lg~~ 114 (331)
T PRK12392 66 SQSVNDYFDLELDRVNE-PTRPIPSGRLSEKEALWNSIIVLLLAIGLGVW 114 (331)
T ss_pred HhHHhcceeecccccCC-CCCCCCcCCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999998754 44443 344666766666666555544433
No 85
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=44.61 E-value=1.8e+02 Score=25.45 Aligned_cols=50 Identities=8% Similarity=0.024 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhcCCChhhhHhcC------CcchhH-hhchhHHHHHHHHHHHHHHH
Q 029438 78 MSIFAFVNGLLKDLPDVEGDKKFG------MNTLCV-LLGKEKVFPLCVNTMLVGYG 127 (193)
Q Consensus 78 ~~l~~~~i~i~kDi~DveGDr~~G------i~Tl~v-~lG~~~~~~l~~~ll~~~y~ 127 (193)
..+.-.+..++||..|.|=|+... -|+++. ++-+|.+...+..+..++-.
T Consensus 49 ~~l~~~~~n~~Ndy~D~~~g~D~~~rt~~~~r~l~~G~is~~~~~~~~~~~~~ia~~ 105 (296)
T PRK05951 49 YFLLHASLNVFNDYKDYVLDCDHHETTGYRQHPIQAGIMTLGHLRVLGIALGAIALQ 105 (296)
T ss_pred HHHHHHHHHHHHhHHHHhcCCccccccCCCCCccccCCcCHHHHHHHHHHHHHHHHH
Confidence 334445557999999955544443 233322 34567777776665555543
No 86
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=43.71 E-value=1.6e+02 Score=26.18 Aligned_cols=47 Identities=13% Similarity=-0.022 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHhcCCChhhhHhcCC-cchhH---hhchhHHHHHHHHH
Q 029438 75 GAIMSIFAFVNGLLKDLPDVEGDKKFGM-NTLCV---LLGKEKVFPLCVNT 121 (193)
Q Consensus 75 ~~~~~l~~~~i~i~kDi~DveGDr~~Gi-~Tl~v---~lG~~~~~~l~~~l 121 (193)
.+-.++...+-.++||+-|.|=||+..- +.=|. ++.++.+..++..+
T Consensus 50 ~~g~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~sG~is~~~A~~~~~~~ 100 (294)
T PRK12873 50 ILGGLAVSGAGCIANDLWDRRIDRKVERTKNRPLARGKISLKTAYSLLIVL 100 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCcCCCCCCCCCCCCHHHHHHHHHHH
Confidence 3344455555679999999999997764 34443 34445555444433
No 87
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=43.66 E-value=1.4e+02 Score=26.34 Aligned_cols=33 Identities=21% Similarity=0.142 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhcCCChhhhHhcCC-cchhHhhch
Q 029438 79 SIFAFVNGLLKDLPDVEGDKKFGM-NTLCVLLGK 111 (193)
Q Consensus 79 ~l~~~~i~i~kDi~DveGDr~~Gi-~Tl~v~lG~ 111 (193)
.+...+-.++||+.|.|=||+..- +.=|..=|+
T Consensus 55 ~~~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~ 88 (289)
T PLN02809 55 LLLRGAGCTINDLLDRDIDKKVERTKLRPIASGA 88 (289)
T ss_pred HHHHHHHHHHHhhHHhccccCCCCCCCCCCCCCC
Confidence 344444569999999999987532 345555563
No 88
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=42.74 E-value=1.6e+02 Score=25.60 Aligned_cols=45 Identities=11% Similarity=0.132 Sum_probs=26.1
Q ss_pred HHHHHHHHHhcCCChhhhHhcCC-cchhHh---hchhHHHHHHHHHHHH
Q 029438 80 IFAFVNGLLKDLPDVEGDKKFGM-NTLCVL---LGKEKVFPLCVNTMLV 124 (193)
Q Consensus 80 l~~~~i~i~kDi~DveGDr~~Gi-~Tl~v~---lG~~~~~~l~~~ll~~ 124 (193)
+...+-.++||.-|.|=||+..- +.=|.. +.++.+..++..+..+
T Consensus 51 l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~ 99 (281)
T TIGR01474 51 LMRGAGCVINDIWDRDFDPQVERTKSRPLASGAVSVRQAILFLLVQLLV 99 (281)
T ss_pred HHHHHHHHHHhHhhhcccccCCcccCCCCCCCCcCHHHHHHHHHHHHHH
Confidence 34455579999999999986432 123333 3345555554443333
No 89
>COG4512 AgrB Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Transcription]
Probab=41.37 E-value=47 Score=28.06 Aligned_cols=67 Identities=19% Similarity=0.202 Sum_probs=47.8
Q ss_pred hhhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCChhHH
Q 029438 94 VEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKKVDLDNFEST 171 (193)
Q Consensus 94 veGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~h~~l~~~l~~~~~~~d~~~~~a~ 171 (193)
-.=|.++|++-+-+++|-+-. ..-..-+.+.|..+...|..+. +...|+ +..|.|....-++.+.|+
T Consensus 16 ~k~n~ee~i~~lkvklG~eII-l~n~fkllivy~isl~~glil~-------tl~~hl---Sy~flR~na~GaHak~SI 82 (198)
T COG4512 16 KKLNAEEGISVLKVKLGFEII-LINLFKLLIVYAISLLHGLILL-------TLQIHL---SYTFLRVNAFGAHAKHSI 82 (198)
T ss_pred HHhcccccceEEEeecceeeh-HHHHHHHHHHHHHHHHHHHHHH-------HHHHHH---HHHHHHHHcccccccccc
Confidence 345677888899999999844 3444555666777776666654 666777 888999888777776653
No 90
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=40.57 E-value=2.5e+02 Score=24.57 Aligned_cols=27 Identities=15% Similarity=-0.113 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHhcCCChhhhHhcC
Q 029438 75 GAIMSIFAFVNGLLKDLPDVEGDKKFG 101 (193)
Q Consensus 75 ~~~~~l~~~~i~i~kDi~DveGDr~~G 101 (193)
.....+...+-.++||.-|.|-|++..
T Consensus 45 ~l~~~l~~~a~~~~Nd~~Dr~iD~~~~ 71 (284)
T PRK12888 45 TVAMVGARTFAMAANRIIDREIDARNP 71 (284)
T ss_pred HHHHHHHHHHHHHHHhHHhhCCCCCCC
Confidence 334444455557999999999999874
No 91
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=40.01 E-value=2.5e+02 Score=24.34 Aligned_cols=46 Identities=17% Similarity=0.256 Sum_probs=27.7
Q ss_pred HHHHHHHHHhcCCChhhhHhcC---CcchhH-hhchhHHHHHHHHHHHHH
Q 029438 80 IFAFVNGLLKDLPDVEGDKKFG---MNTLCV-LLGKEKVFPLCVNTMLVG 125 (193)
Q Consensus 80 l~~~~i~i~kDi~DveGDr~~G---i~Tl~v-~lG~~~~~~l~~~ll~~~ 125 (193)
+...+-.++||+-|.|=||+.. -|.+|. ++.++.+...+..+..++
T Consensus 53 l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~l~~~~ 102 (282)
T PRK12848 53 LMRAAGCVINDYADRDFDGHVKRTKNRPLASGAVSEKEALALFVVLVLVA 102 (282)
T ss_pred HHHHHHHHHHhhHHhccCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHH
Confidence 3445567999999999998533 233332 334555555555444443
No 92
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=39.79 E-value=1.8e+02 Score=25.43 Aligned_cols=46 Identities=15% Similarity=0.135 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhcCCChhhhHhcC---CcchhH-hhchhHHHHHHHHHHH
Q 029438 78 MSIFAFVNGLLKDLPDVEGDKKFG---MNTLCV-LLGKEKVFPLCVNTML 123 (193)
Q Consensus 78 ~~l~~~~i~i~kDi~DveGDr~~G---i~Tl~v-~lG~~~~~~l~~~ll~ 123 (193)
..+...+-.++||+-|.|=||+.. -|.+|. ++.++.+..++..+..
T Consensus 55 ~~~~~~a~~~~Nd~~D~~iD~~~~Rt~~RPL~sG~is~~~a~~~~~~~~~ 104 (290)
T PRK12870 55 ALATSAAGCVVNDLWDRDIDPQVERTRFRPLASRRLSVKVGIVIAIVALL 104 (290)
T ss_pred HHHHHHHHHHHHhHHHhccCCCCCcccCCCCCCCCcCHHHHHHHHHHHHH
Confidence 334455557999999999997533 233332 3344444444443333
No 93
>PRK14984 high-affinity gluconate transporter; Provisional
Probab=39.16 E-value=3.4e+02 Score=25.68 Aligned_cols=95 Identities=15% Similarity=0.135 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHhcCCCCcchhhhhhhhhHHHHHHHhh-hhhhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHH
Q 029438 9 LNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMG-LTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFVNGL 87 (193)
Q Consensus 9 ~~~~~~l~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~-iv~lg~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~i 87 (193)
..+.+++.+...=. .|+|-||+++.+..+...| ....+.....++...| -...-.++..+..+=.+++-..|.
T Consensus 4 ~~~~~~I~~ll~li-----~k~Kl~pf~alli~a~~~gl~~Gm~~~~~~~~i~~G-~g~~l~si~iii~lGai~G~~l~~ 77 (438)
T PRK14984 4 VIVAIGVALLLLLM-----IRFKMNGFIALVLVALAVGLMQGMPLDKVIGSIKAG-VGGTLGSLALIMGFGAMLGKMLAD 77 (438)
T ss_pred HHHHHHHHHHHHHH-----HHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666 8999999988776555555 3333232222221111 111112233333333334333343
Q ss_pred HhcCCChhhhHhcCCcchhHhhchhHHHH
Q 029438 88 LKDLPDVEGDKKFGMNTLCVLLGKEKVFP 116 (193)
Q Consensus 88 ~kDi~DveGDr~~Gi~Tl~v~lG~~~~~~ 116 (193)
-+..|.+. +++=.++|+||+.+
T Consensus 78 SGaA~~IA-------~~ii~~~G~kr~~~ 99 (438)
T PRK14984 78 CGGAQRIA-------TTLIAKFGKKHIQW 99 (438)
T ss_pred cChHHHHH-------HHHHHHhCccchHH
Confidence 33333333 45555788887765
No 94
>PRK10581 geranyltranstransferase; Provisional
Probab=38.53 E-value=31 Score=30.58 Aligned_cols=47 Identities=23% Similarity=0.287 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHhcCCChhhh-----------HhcCCcchhHhhchhHHHHHHHHHHH
Q 029438 77 IMSIFAFVNGLLKDLPDVEGD-----------KKFGMNTLCVLLGKEKVFPLCVNTML 123 (193)
Q Consensus 77 ~~~l~~~~i~i~kDi~DveGD-----------r~~Gi~Tl~v~lG~~~~~~l~~~ll~ 123 (193)
+-.-++.+-.|..|+-|+.|| -+.|..|+|+.+|.+.+...+--...
T Consensus 211 ~g~~lG~aFQI~DDilD~~g~~~~~GK~~g~Dl~~gk~T~p~l~~~e~a~~~a~~~~~ 268 (299)
T PRK10581 211 YAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKARDLID 268 (299)
T ss_pred HHHHHHHHHHHHHHHccccCChHHHCCCcchhhhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 334455555699999999776 45789999999998877765544433
No 95
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=35.65 E-value=2.5e+02 Score=24.63 Aligned_cols=22 Identities=18% Similarity=-0.112 Sum_probs=16.9
Q ss_pred HHHHHHHHHhcCCChhhhHhcC
Q 029438 80 IFAFVNGLLKDLPDVEGDKKFG 101 (193)
Q Consensus 80 l~~~~i~i~kDi~DveGDr~~G 101 (193)
+...+-.++||+-|.|=|++..
T Consensus 53 l~~~a~~~~Nd~~D~~iD~~~~ 74 (291)
T PRK12886 53 GARTAAMGFNRLIDAEIDARNP 74 (291)
T ss_pred HHHHHHHHHHhHHhhccCCCCC
Confidence 3444446899999999999764
No 96
>PRK11383 hypothetical protein; Provisional
Probab=33.24 E-value=2.7e+02 Score=22.67 Aligned_cols=85 Identities=9% Similarity=0.043 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHhcCCCCcchhh--hhhhhhHHHHHHHhh-hhhhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHH
Q 029438 8 LLNQILFFLCGCAYSLPLPFLRWK--SHTFMAPLCLVITMG-LTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFV 84 (193)
Q Consensus 8 ~~~~~~~l~l~~~YS~~~PplRlK--r~p~l~~l~I~~v~~-iv~lg~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 84 (193)
+..++.+++..+.|- .-.|.| ..|.-+...-.+-.. ++.++.+. . .+...+-.++..-.....++...--+
T Consensus 45 ~~vl~lglF~avs~Q---K~vRD~~egi~vt~~f~~~cw~a~l~~i~LL~--i-GLwNA~l~lsEKGfY~~af~lsLFga 118 (145)
T PRK11383 45 FAVLVLGLFSAASYQ---KTVRDKYEGIPTTSIYYMTCLTVFIISVALLM--V-GLWNATLLLSEKGFYGLAFFLSLFGA 118 (145)
T ss_pred HHHHHHHHHHHHHHH---HHHhhcccCCChhHHHHHHHHHHHHHHHHHHH--H-HHhcCCcchhhhhHHHHHHHHHHHHH
Confidence 455567777777776 457777 666433211111111 22222211 1 12222433444444445555444456
Q ss_pred HHHHhcCCChhhhH
Q 029438 85 NGLLKDLPDVEGDK 98 (193)
Q Consensus 85 i~i~kDi~DveGDr 98 (193)
+.+-|.++|...++
T Consensus 119 i~vQKn~RD~~~~~ 132 (145)
T PRK11383 119 VAVQKNIRDAGINP 132 (145)
T ss_pred HHHHhhhhhhhhcc
Confidence 78999999985443
No 97
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=32.86 E-value=1.9e+02 Score=25.51 Aligned_cols=23 Identities=4% Similarity=-0.192 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHhcCCChhhhHhc
Q 029438 78 MSIFAFVNGLLKDLPDVEGDKKF 100 (193)
Q Consensus 78 ~~l~~~~i~i~kDi~DveGDr~~ 100 (193)
..+...+-.++||+-|.|=||+.
T Consensus 46 ~~~~rsag~~~Ndi~Dr~iD~~~ 68 (286)
T PRK12895 46 AVSARTSAMSINRIEGLRYDMIN 68 (286)
T ss_pred HHHHHHHHHHHHhHHHhcccCCC
Confidence 33444555799999999999887
No 98
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=31.17 E-value=2e+02 Score=20.49 Aligned_cols=30 Identities=13% Similarity=0.149 Sum_probs=24.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 029438 110 GKEKVFPLCVNTMLVGYGCALIAGASSSFM 139 (193)
Q Consensus 110 G~~~~~~l~~~ll~~~y~~~i~~~~~~~~~ 139 (193)
|+|++-++...++.+....+.+.|......
T Consensus 5 gQ~~ae~l~~~il~~~~iisfi~Gy~~q~~ 34 (76)
T PF06645_consen 5 GQRLAEKLMQYILIISAIISFIVGYITQSF 34 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999888888888766543
No 99
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1. Superfamily of trans-isoprenyl diphosphate synthases (IPPS) and class I terpene cyclases which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, and diterpenes; and are widely distributed among archaea, bacteria, and eukaryota.The enzymes in this superfamily share the same 'isoprenoid synthase fold' and include several subgroups. The head-to-tail (HT) IPPS catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates. Cyclic monoter
Probab=30.89 E-value=27 Score=27.36 Aligned_cols=37 Identities=35% Similarity=0.352 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHhcCCChhhhHhc--CCcchhHhhchhH
Q 029438 77 IMSIFAFVNGLLKDLPDVEGDKKF--GMNTLCVLLGKEK 113 (193)
Q Consensus 77 ~~~l~~~~i~i~kDi~DveGDr~~--Gi~Tl~v~lG~~~ 113 (193)
+.-..+....+.+|+.|.++|.+. |..|+|..+-.+.
T Consensus 148 ~~~~~g~~~ql~nDl~~~~~e~~~~~~~~~l~~~~~~~~ 186 (243)
T cd00385 148 LGRALGLAFQLTNDLLDYEGDAERGEGKCTLPVLYALEY 186 (243)
T ss_pred HHHHHHHHHHHHHHHHhccCCHHHhCCchHHHHHHHHHh
Confidence 334466667899999999999998 7888988775543
No 100
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=29.82 E-value=3.4e+02 Score=22.85 Aligned_cols=20 Identities=10% Similarity=0.034 Sum_probs=14.3
Q ss_pred hhchhHHHHHHHHHHHHHHH
Q 029438 108 LLGKEKVFPLCVNTMLVGYG 127 (193)
Q Consensus 108 ~lG~~~~~~l~~~ll~~~y~ 127 (193)
|+|+|+...++..+..++..
T Consensus 63 r~g~r~~~~~~~~~~~i~~~ 82 (366)
T TIGR00886 63 KFGPRYTTTLSLLLLAIPCL 82 (366)
T ss_pred HhCchHHHHHHHHHHHHHHH
Confidence 56888888777766666554
No 101
>PRK10133 L-fucose transporter; Provisional
Probab=26.88 E-value=4.7e+02 Score=23.69 Aligned_cols=77 Identities=8% Similarity=-0.033 Sum_probs=39.2
Q ss_pred chhHhhchhHHHHHHHHHHHHHHHHHHHHHhh-h-hh-hHHHHHHHHHHHHHHHHHHHHhhhccCCChhH-HHHHHHHHH
Q 029438 104 TLCVLLGKEKVFPLCVNTMLVGYGCALIAGAS-S-SF-MINKLVTIIGHSILALILWIQSKKVDLDNFES-TFGFYMLIW 179 (193)
Q Consensus 104 Tl~v~lG~~~~~~l~~~ll~~~y~~~i~~~~~-~-~~-~~~~~~~~~~h~~l~~~l~~~~~~~d~~~~~a-~~~fY~fiW 179 (193)
.+.-|+|+|++..++..+..++.+........ . .. .......++++...-...-........+++++ ..+.++..|
T Consensus 83 ~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~ 162 (438)
T PRK10133 83 ILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFN 162 (438)
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHH
Confidence 34458899999999888887776543211211 1 11 12234445555544333322222222222222 456777776
Q ss_pred H
Q 029438 180 K 180 (193)
Q Consensus 180 ~ 180 (193)
.
T Consensus 163 ~ 163 (438)
T PRK10133 163 S 163 (438)
T ss_pred H
Confidence 5
No 102
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=26.61 E-value=4.4e+02 Score=23.47 Aligned_cols=25 Identities=16% Similarity=0.007 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHhcCCChhhhHhc
Q 029438 76 AIMSIFAFVNGLLKDLPDVEGDKKF 100 (193)
Q Consensus 76 ~~~~l~~~~i~i~kDi~DveGDr~~ 100 (193)
+...+...+-.++||.-|.|-|++.
T Consensus 79 l~~~l~~~a~~~~Nd~~Dr~iD~~~ 103 (314)
T PRK12878 79 VGAIAMRGAGCTYNDIVDRDIDAKV 103 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCC
Confidence 3333445555799999999999864
No 103
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=25.90 E-value=4.4e+02 Score=23.45 Aligned_cols=52 Identities=25% Similarity=0.151 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhcCCChh--hhHhcCCcchhHh-hchhHHHHHHHHHHHHHHHHHH
Q 029438 78 MSIFAFVNGLLKDLPDVE--GDKKFGMNTLCVL-LGKEKVFPLCVNTMLVGYGCAL 130 (193)
Q Consensus 78 ~~l~~~~i~i~kDi~Dve--GDr~~Gi~Tl~v~-lG~~~~~~l~~~ll~~~y~~~i 130 (193)
..+.-.+....||..|-+ -|+++- +...-. ..+|.+.+++..++.++-+..+
T Consensus 57 ~~l~q~~~N~~NDy~D~~~G~D~~~~-~~~~~~~~~~~~v~~~~~~~~~~a~~~Gl 111 (304)
T PRK07419 57 AILILAWENLSNDVFDADTGIDKNKF-HSVVNLTGNKSLVFWLANLFLLLGLLGIL 111 (304)
T ss_pred HHHHHHHHHHHHHHHHHhccCCcccc-cCcccccCcHHHHHHHHHHHHHHHHHHHH
Confidence 333444557999999977 565421 111111 1356677776666665554333
No 104
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=25.28 E-value=4.7e+02 Score=22.95 Aligned_cols=55 Identities=13% Similarity=0.159 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhcCCChh-----hhHhcCCcchhH-hhchhHHHHHHHHHHHHHHHHHHHHH
Q 029438 79 SIFAFVNGLLKDLPDVE-----GDKKFGMNTLCV-LLGKEKVFPLCVNTMLVGYGCALIAG 133 (193)
Q Consensus 79 ~l~~~~i~i~kDi~Dve-----GDr~~Gi~Tl~v-~lG~~~~~~l~~~ll~~~y~~~i~~~ 133 (193)
.+.-.+..+.||..|-+ .||..+.|.++- .+-+|.+..++..++.++-+..+...
T Consensus 38 ~~~q~~~N~~NDy~D~~~G~D~~~~~~~~r~i~~g~is~~~v~~~~~~~~~~a~~~Gi~l~ 98 (284)
T TIGR00751 38 VLLQILSNYANDYGDGIKGSDTDDRIGPLRGVQKGLITPREVKTALITSVALGALSGLVLA 98 (284)
T ss_pred HHHHHHHHHHHhHHHHhcCCChhhccCCcchhcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555567999999973 345444555432 24456777777776666655444433
No 105
>PRK09821 putative transporter; Provisional
Probab=24.01 E-value=6.3e+02 Score=24.01 Aligned_cols=36 Identities=17% Similarity=0.112 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcchhhhhhhhhHHHHHHHhh
Q 029438 6 PLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMG 46 (193)
Q Consensus 6 ~l~~~~~~~l~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~ 46 (193)
.++....+++.+-..=- .|+|-||+++.++.....|
T Consensus 5 ~l~~~~~~~i~~l~~li-----~k~kl~pf~alii~al~~g 40 (454)
T PRK09821 5 LLLCIALAGVILLLLLV-----IKAKVQPFVALLLVSLLVA 40 (454)
T ss_pred HHHHHHHHHHHHHHHHH-----HHhCccHHHHHHHHHHHHH
Confidence 34555555665544444 8999999988877666666
No 106
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=23.66 E-value=5.2e+02 Score=22.92 Aligned_cols=25 Identities=20% Similarity=0.107 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHhcCCChhhhHhc
Q 029438 76 AIMSIFAFVNGLLKDLPDVEGDKKF 100 (193)
Q Consensus 76 ~~~~l~~~~i~i~kDi~DveGDr~~ 100 (193)
+-..+...+-.++||+-|.|=|++.
T Consensus 56 lg~~l~~~a~~~~Nd~~D~diD~~~ 80 (300)
T PRK13106 56 LALFFLRTAGMTNDNLADLEIDAKN 80 (300)
T ss_pred HHHHHHHHHHHHHHhhHHhccccCC
Confidence 3444455555799999999999986
No 107
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=23.05 E-value=5.5e+02 Score=22.99 Aligned_cols=31 Identities=23% Similarity=0.146 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCChhhhHhcC
Q 029438 71 LILMGAIMSIFAFVNGLLKDLPDVEGDKKFG 101 (193)
Q Consensus 71 ~~~~~~~~~l~~~~i~i~kDi~DveGDr~~G 101 (193)
+..+++.+...-.+=..+||+-|.|=||+.-
T Consensus 49 ~~~~~~a~~~~Rsag~~~Nd~~DrdiD~~~~ 79 (300)
T PRK12876 49 ISLGGSAFFCARTVGIIVNQIIDCAIDKKNP 79 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHhcccCCCC
Confidence 3445555555555557999999999999886
No 108
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=20.63 E-value=1.9e+02 Score=25.04 Aligned_cols=52 Identities=19% Similarity=0.159 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCChhHHHHH
Q 029438 112 EKVFPLCVNTMLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKKVDLDNFESTFGF 174 (193)
Q Consensus 112 ~~~~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~h~~l~~~l~~~~~~~d~~~~~a~~~f 174 (193)
|.+..+|..++.+-++...++.++---.-|++ .-..|++.+--+.++++.+|
T Consensus 127 K~amLIClIIIAVLfLICT~LfLSTVVLANKV-----------S~LKrskQ~gKRqpRSNGDF 178 (227)
T PF05399_consen 127 KMAMLICLIIIAVLFLICTLLFLSTVVLANKV-----------SSLKRSKQVGKRQPRSNGDF 178 (227)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHhhccCCCcccce
Confidence 45667777777776665554444322222332 33478888777888887766
No 109
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=20.46 E-value=7.2e+02 Score=23.34 Aligned_cols=100 Identities=16% Similarity=0.104 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHhcCCChhhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 029438 75 GAIMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGASSSFMINKLVTIIGHSILAL 154 (193)
Q Consensus 75 ~~~~~l~~~~i~i~kDi~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~h~~l~~ 154 (193)
...+.+-+..+-.+..+.|. +|.+ ..|+.++.+..--.-+.+....+....+..++.+.+.+++.
T Consensus 307 s~vy~Isav~spvfg~i~Dk--------------~G~n-~~wv~~a~~~tl~~H~~l~Ft~lsPy~~m~~lGLsysllAc 371 (459)
T KOG4686|consen 307 STVYGISAVLSPVFGAISDK--------------YGFN-LWWVASACILTLLGHSGLFFTFLSPYTSMTFLGLSYSLLAC 371 (459)
T ss_pred hhhhhhhhhhhhhHHHhHhh--------------hcce-ehhHHHHHHHHHHHhhhHHhhhccHHHHHHHHhhhHHHHHH
Confidence 34455555555566666664 4444 44555544443333333333334444577889999999999
Q ss_pred HHHHHhhhccCCChhHHHHHHHHHHHHHHHHHHhhhh
Q 029438 155 ILWIQSKKVDLDNFESTFGFYMLIWKLTFVEYILIHF 191 (193)
Q Consensus 155 ~l~~~~~~~d~~~~~a~~~fY~fiW~lf~~ey~l~p~ 191 (193)
.+|+--..+ -.+++.-.=|-|+-..-=.+...+|+
T Consensus 372 slWP~va~~--vpE~qLGTaygf~qsIqNLgla~i~I 406 (459)
T KOG4686|consen 372 SLWPCVASL--VPEEQLGTAYGFIQSIQNLGLAFIPI 406 (459)
T ss_pred HHhhhhhhh--CCHHHhcchHHHHHHHHhhhhhHHhh
Confidence 999887763 34444433344443333334444443
No 110
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze head-to-tail (HT) (1'-4) condensation reactions. This CD includes all-trans (E)-isoprenyl diphosphate synthases which synthesize various chain length (C10, C15, C20, C25, C30, C35, C40, C45, and C50) linear isoprenyl diphosphates from precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). They catalyze the successive 1'-4 condensation of the 5-carbon IPP to allylic substrates geranyl-, farnesyl-, or geranylgeranyl-diphosphate. Isoprenoid chain elongation reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DDXX(XX
Probab=20.06 E-value=71 Score=27.20 Aligned_cols=30 Identities=33% Similarity=0.409 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCChhh-----------hHhcCCcchhHhhc
Q 029438 81 FAFVNGLLKDLPDVEG-----------DKKFGMNTLCVLLG 110 (193)
Q Consensus 81 ~~~~i~i~kDi~DveG-----------Dr~~Gi~Tl~v~lG 110 (193)
++.+-.|.+|+.|+.| |-+.|..|+|+..+
T Consensus 181 lG~afQi~DD~ld~~~~~~~~gK~~~~Di~~gk~T~~~~~~ 221 (259)
T cd00685 181 LGLAFQIQDDILDLFGDPETLGKPVGSDLREGKCTLPVLLA 221 (259)
T ss_pred HHHHHHHHHHhhcccCChHHHCCCcchHHHcCCchHHHHHH
Done!